RU84_05670 a9d104b54f83f62aa726c547d6f6e544 333 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 40 330 2.1E-92 T 18-10-2018 IPR011757 Lytic transglycosylase MltB RU84_05670 a9d104b54f83f62aa726c547d6f6e544 333 Gene3D G3DSA:1.10.8.350 43 209 1.2E-93 T 18-10-2018 RU84_05670 a9d104b54f83f62aa726c547d6f6e544 333 SUPERFAMILY SSF53955 24 331 6.56E-80 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_05670 a9d104b54f83f62aa726c547d6f6e544 333 Gene3D G3DSA:1.10.530.10 76 327 1.2E-93 T 18-10-2018 RU84_05670 a9d104b54f83f62aa726c547d6f6e544 333 Pfam PF13406 Transglycosylase SLT domain 37 327 3.5E-87 T 18-10-2018 IPR031304 Transglycosylase SLT domain 2 RU84_15325 addca0c315fe06545d56a66a30783068 206 SUPERFAMILY SSF47616 77 202 6.96E-35 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_15325 addca0c315fe06545d56a66a30783068 206 Gene3D G3DSA:3.40.30.10 2 203 3.2E-83 T 18-10-2018 RU84_15325 addca0c315fe06545d56a66a30783068 206 SUPERFAMILY SSF52833 1 83 7.62E-23 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_15325 addca0c315fe06545d56a66a30783068 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 132 195 2.3E-6 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_15325 addca0c315fe06545d56a66a30783068 206 Gene3D G3DSA:1.20.1050.10 87 194 3.2E-83 T 18-10-2018 RU84_15325 addca0c315fe06545d56a66a30783068 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 80 1.0E-13 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 9.3E-106 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 97 108 - T 18-10-2018 IPR018215 ClpP, Ser active site RU84_15970 fe5be350711601f9b290c7d0963e41da 201 Pfam PF00574 Clp protease 20 199 1.8E-88 T 18-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA RU84_15970 fe5be350711601f9b290c7d0963e41da 201 SUPERFAMILY SSF52096 18 199 2.64E-75 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_15970 fe5be350711601f9b290c7d0963e41da 201 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 119 132 - T 18-10-2018 IPR033135 ClpP, histidine active site RU84_15970 fe5be350711601f9b290c7d0963e41da 201 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 6.6E-52 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 6.6E-52 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 6.6E-52 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 6.6E-52 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 6.6E-52 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 43.953 T 18-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 RU84_15970 fe5be350711601f9b290c7d0963e41da 201 Gene3D G3DSA:3.90.226.10 3 201 7.2E-83 T 18-10-2018 RU84_07530 e54cb7fa105ee86f1285b7dca665bd58 228 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 5 180 1.0E-9 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_07530 e54cb7fa105ee86f1285b7dca665bd58 228 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 181 1.7E-17 T 18-10-2018 RU84_07530 e54cb7fa105ee86f1285b7dca665bd58 228 SUPERFAMILY SSF56784 1 217 3.41E-31 T 18-10-2018 IPR036412 HAD-like superfamily RU84_07530 e54cb7fa105ee86f1285b7dca665bd58 228 Gene3D G3DSA:3.40.50.1000 2 193 1.6E-24 T 18-10-2018 IPR023214 HAD superfamily RU84_17770 36ec17d48ee5665ccbff9eac984431f5 450 SUPERFAMILY SSF103473 17 429 4.97E-64 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_17770 36ec17d48ee5665ccbff9eac984431f5 450 Pfam PF07690 Major Facilitator Superfamily 63 390 4.8E-29 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_17770 36ec17d48ee5665ccbff9eac984431f5 450 Gene3D G3DSA:1.20.1250.20 19 439 2.8E-59 T 18-10-2018 RU84_05770 e647d8f18574d1ae4a0fa18d08172bae 87 Gene3D G3DSA:3.30.70.20 2 81 6.0E-31 T 18-10-2018 RU84_05770 e647d8f18574d1ae4a0fa18d08172bae 87 SUPERFAMILY SSF54862 5 73 6.28E-17 T 18-10-2018 RU84_05770 e647d8f18574d1ae4a0fa18d08172bae 87 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_04280 df04124707598507633a15a6669b16c1 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_04280 df04124707598507633a15a6669b16c1 260 Pfam PF00106 short chain dehydrogenase 6 193 1.5E-47 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 5.1E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.1E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 5.1E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 5.1E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 5.1E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 SUPERFAMILY SSF51735 6 222 6.43E-54 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_04280 df04124707598507633a15a6669b16c1 260 PIRSF PIRSF000126 1 260 1.6E-70 T 18-10-2018 RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 6.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04280 df04124707598507633a15a6669b16c1 260 Gene3D G3DSA:3.40.50.720 4 260 6.3E-67 T 18-10-2018 RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 7.8E-12 T 18-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 15 137 5.9E-47 T 18-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 SUPERFAMILY SSF54862 40 157 1.17E-26 T 18-10-2018 RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 Gene3D G3DSA:3.30.70.3270 31 174 1.3E-39 T 18-10-2018 RU84_14750 dbb05ccada4d9794622a8bc88bc05295 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 5 152 27.034 T 18-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 SUPERFAMILY SSF52540 315 564 4.77E-71 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 SUPERFAMILY SSF52540 10 263 1.57E-63 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 272 0.14 T 18-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 544 570 0.0018 T 18-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 Pfam PF00005 ABC transporter 32 191 1.4E-26 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 Pfam PF00005 ABC transporter 341 491 2.2E-28 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 Gene3D G3DSA:3.40.50.300 8 305 1.6E-81 T 18-10-2018 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 Gene3D G3DSA:3.40.50.300 313 575 4.9E-83 T 18-10-2018 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 ProSitePatterns PS00211 ABC transporters family signature. 465 479 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 SMART SM00382 349 542 4.7E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_09240 36c9e7d8258138e299ed93c85ae262fd 576 SMART SM00382 40 241 4.9E-13 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_02485 3bfd4900fe253994c29a57aaba17db0e 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.566 T 18-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RU84_02485 3bfd4900fe253994c29a57aaba17db0e 142 Gene3D G3DSA:3.90.1180.10 1 142 3.1E-62 T 18-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02485 3bfd4900fe253994c29a57aaba17db0e 142 Pfam PF00572 Ribosomal protein L13 15 138 1.4E-56 T 18-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RU84_02485 3bfd4900fe253994c29a57aaba17db0e 142 SUPERFAMILY SSF52161 1 140 2.35E-58 T 18-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02485 3bfd4900fe253994c29a57aaba17db0e 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 6 142 4.9E-63 T 18-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02485 3bfd4900fe253994c29a57aaba17db0e 142 PIRSF PIRSF002181 1 142 1.5E-50 T 18-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 RU84_15800 9324c8609684cf13d8784c6cbf6a51d7 188 Hamap MF_00045 Oligoribonuclease [orn]. 4 182 43.403 T 18-10-2018 IPR022894 Oligoribonuclease GO:0000175 RU84_15800 9324c8609684cf13d8784c6cbf6a51d7 188 Pfam PF00929 Exonuclease 10 170 5.4E-32 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_15800 9324c8609684cf13d8784c6cbf6a51d7 188 SMART SM00479 8 181 2.4E-19 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_15800 9324c8609684cf13d8784c6cbf6a51d7 188 SUPERFAMILY SSF53098 7 181 8.1E-46 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_15800 9324c8609684cf13d8784c6cbf6a51d7 188 Gene3D G3DSA:3.30.420.10 1 188 4.5E-75 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 267 8.7E-78 T 18-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 18-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 SUPERFAMILY SSF51735 8 160 3.29E-33 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 PIRSF PIRSF000193 6 270 2.4E-76 T 18-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 Gene3D G3DSA:3.40.50.720 6 164 3.7E-48 T 18-10-2018 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 267 26.16 T 18-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 Gene3D G3DSA:1.10.3730.10 165 272 5.8E-41 T 18-10-2018 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 SUPERFAMILY SSF48179 163 270 5.61E-34 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 100 4.0E-23 T 18-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RU84_15240 d20b558b829be9ebd9e2b0a2ce7eafd0 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 4.2E-35 T 18-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 168 306 7.1E-40 T 18-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 PIRSF PIRSF000445 1 427 2.0E-138 T 18-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 SUPERFAMILY SSF69075 317 415 6.8E-21 T 18-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 SUPERFAMILY SSF69742 1 153 7.85E-45 T 18-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 414 7.1E-120 T 18-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 Gene3D G3DSA:3.40.50.720 157 313 7.3E-41 T 18-10-2018 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 95 118 - T 18-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 28.02 T 18-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 SUPERFAMILY SSF51735 159 315 7.69E-30 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 Gene3D G3DSA:3.30.460.30 2 154 5.5E-52 T 18-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 413 4.2E-15 T 18-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_14350 2a55bf97861e4a159ab6a68052b105b9 427 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 152 5.1E-46 T 18-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 116 4.6E-33 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 PIRSF PIRSF016578 3 111 4.1E-6 T 18-10-2018 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 PIRSF PIRSF016578 127 376 5.7E-13 T 18-10-2018 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 2.3E-49 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 SUPERFAMILY SSF56645 2 238 1.06E-77 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 Gene3D G3DSA:2.40.110.10 119 231 5.5E-43 T 18-10-2018 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 1.0E-25 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 Gene3D G3DSA:1.10.540.10 1 118 5.1E-41 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 SUPERFAMILY SSF47203 225 375 7.25E-57 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 Gene3D G3DSA:1.20.140.10 232 378 5.3E-55 T 18-10-2018 RU84_06660 838ad2c5232b5b42d93a8d3f3e597e6d 378 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10985 033a3fc9457a4538936564b90a1f8201 145 Gene3D G3DSA:2.40.128.520 25 145 1.3E-15 T 18-10-2018 RU84_10985 033a3fc9457a4538936564b90a1f8201 145 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 27 143 4.7E-24 T 18-10-2018 IPR019223 Domain of unknown function DUF2147 RU84_06820 843445db0ad6c12409f2fe542fd46fe5 157 Gene3D G3DSA:3.40.50.300 3 154 2.8E-41 T 18-10-2018 RU84_06820 843445db0ad6c12409f2fe542fd46fe5 157 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 131 1.8E-38 T 18-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RU84_06820 843445db0ad6c12409f2fe542fd46fe5 157 SUPERFAMILY SSF52540 23 127 2.78E-20 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06820 843445db0ad6c12409f2fe542fd46fe5 157 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 10 135 6.4E-42 T 18-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 RU84_04955 443049ff2860f8261f5280b9c4cb8787 745 SUPERFAMILY SSF53659 5 742 0.0 T 18-10-2018 RU84_04955 443049ff2860f8261f5280b9c4cb8787 745 PIRSF PIRSF009407 1 744 0.0 T 18-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RU84_04955 443049ff2860f8261f5280b9c4cb8787 745 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 744 0.0 T 18-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RU84_04955 443049ff2860f8261f5280b9c4cb8787 745 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 18-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RU84_04955 443049ff2860f8261f5280b9c4cb8787 745 Gene3D G3DSA:3.40.718.10 404 663 3.0E-7 T 18-10-2018 RU84_05760 b896bf65540fbaf9147158c64c413ed8 251 SMART SM00382 24 223 3.1E-15 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05760 b896bf65540fbaf9147158c64c413ed8 251 SUPERFAMILY SSF52540 2 245 1.77E-74 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05760 b896bf65540fbaf9147158c64c413ed8 251 Gene3D G3DSA:3.40.50.300 1 250 1.1E-80 T 18-10-2018 RU84_05760 b896bf65540fbaf9147158c64c413ed8 251 PIRSF PIRSF039085 1 251 1.3E-118 T 18-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RU84_05760 b896bf65540fbaf9147158c64c413ed8 251 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05760 b896bf65540fbaf9147158c64c413ed8 251 Pfam PF00005 ABC transporter 15 175 3.3E-34 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 SUPERFAMILY SSF55729 301 428 7.55E-20 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 Gene3D G3DSA:3.40.630.30 298 450 2.1E-39 T 18-10-2018 RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 Pfam PF00696 Amino acid kinase family 33 272 8.5E-26 T 18-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 Pfam PF00583 Acetyltransferase (GNAT) family 331 410 7.1E-11 T 18-10-2018 IPR000182 GNAT domain RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 16 449 3.7E-182 T 18-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 Gene3D G3DSA:3.40.1160.10 14 297 2.3E-91 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 450 208.102 T 18-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 SUPERFAMILY SSF53633 11 297 7.96E-73 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_18145 257a32293f945e2ed4c4858a6e62be42 451 PIRSF PIRSF000423 6 450 6.3E-193 T 18-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 RU84_09250 3696e4c12ea09e9d128cfd0d6055dc60 312 SUPERFAMILY SSF161098 90 296 3.79E-15 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09250 3696e4c12ea09e9d128cfd0d6055dc60 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 309 4.9E-36 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_09250 3696e4c12ea09e9d128cfd0d6055dc60 312 Gene3D G3DSA:1.10.3720.10 84 306 3.2E-20 T 18-10-2018 IPR035906 MetI-like superfamily RU84_06590 46f5df9afe0279d348780b9f64883a9b 812 Gene3D G3DSA:1.25.40.10 236 511 1.0E-11 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06590 46f5df9afe0279d348780b9f64883a9b 812 SUPERFAMILY SSF48452 318 460 1.57E-9 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06590 46f5df9afe0279d348780b9f64883a9b 812 SUPERFAMILY SSF48452 21 212 2.78E-6 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06590 46f5df9afe0279d348780b9f64883a9b 812 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 6 812 1.3E-134 T 18-10-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:1901515 RU84_08810 7ecd985c28cfd9a663bf49e22ef02746 379 Gene3D G3DSA:1.10.10.10 193 281 1.4E-5 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08810 7ecd985c28cfd9a663bf49e22ef02746 379 Gene3D G3DSA:3.30.450.40 32 192 3.1E-27 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_17920 b8f758b731588f76f9636b133d15f490 236 SMART SM00345 22 80 8.4E-10 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17920 b8f758b731588f76f9636b133d15f490 236 SUPERFAMILY SSF46785 14 106 1.95E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17920 b8f758b731588f76f9636b133d15f490 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 2.3E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17920 b8f758b731588f76f9636b133d15f490 236 SUPERFAMILY SSF48008 86 223 3.66E-25 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_17920 b8f758b731588f76f9636b133d15f490 236 SMART SM00895 90 217 2.5E-21 T 18-10-2018 IPR011711 GntR, C-terminal RU84_17920 b8f758b731588f76f9636b133d15f490 236 Gene3D G3DSA:1.20.120.530 85 231 5.7E-30 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_17920 b8f758b731588f76f9636b133d15f490 236 Gene3D G3DSA:1.10.10.10 6 80 1.1E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17920 b8f758b731588f76f9636b133d15f490 236 Pfam PF07729 FCD domain 90 216 6.9E-25 T 18-10-2018 IPR011711 GntR, C-terminal RU84_01010 c0016743f1a107709ba54935a8c331d1 482 Gene3D G3DSA:3.40.309.10 259 448 5.1E-173 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_01010 c0016743f1a107709ba54935a8c331d1 482 SUPERFAMILY SSF53720 20 479 2.88E-162 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_01010 c0016743f1a107709ba54935a8c331d1 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 280 291 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_01010 c0016743f1a107709ba54935a8c331d1 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_01010 c0016743f1a107709ba54935a8c331d1 482 Gene3D G3DSA:3.40.605.10 22 471 5.1E-173 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_01010 c0016743f1a107709ba54935a8c331d1 482 Pfam PF00171 Aldehyde dehydrogenase family 23 475 2.8E-160 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_01010 c0016743f1a107709ba54935a8c331d1 482 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 28 474 5.8E-210 T 18-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 RU84_06630 f5b776d2cc01be0f007c1d7fa528638a 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.4E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_06630 f5b776d2cc01be0f007c1d7fa528638a 300 Gene3D G3DSA:3.40.190.290 95 298 4.4E-59 T 18-10-2018 RU84_06630 f5b776d2cc01be0f007c1d7fa528638a 300 Pfam PF03466 LysR substrate binding domain 93 295 1.2E-39 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_06630 f5b776d2cc01be0f007c1d7fa528638a 300 SUPERFAMILY SSF46785 9 89 1.51E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06630 f5b776d2cc01be0f007c1d7fa528638a 300 Gene3D G3DSA:1.10.10.10 7 92 3.2E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06630 f5b776d2cc01be0f007c1d7fa528638a 300 SUPERFAMILY SSF53850 93 297 1.35E-40 T 18-10-2018 RU84_12810 0661121c01e1c8c2301cbbd81e0da49b 269 Gene3D G3DSA:1.20.1540.10 11 223 2.3E-33 T 18-10-2018 IPR035952 Rhomboid-like superfamily RU84_12810 0661121c01e1c8c2301cbbd81e0da49b 269 Pfam PF01694 Rhomboid family 63 217 4.5E-32 T 18-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RU84_12810 0661121c01e1c8c2301cbbd81e0da49b 269 SUPERFAMILY SSF144091 17 220 1.16E-37 T 18-10-2018 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 2.5E-12 T 18-10-2018 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 499 517 2.5E-12 T 18-10-2018 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 460 478 2.5E-12 T 18-10-2018 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 SUPERFAMILY SSF51971 334 518 2.0E-40 T 18-10-2018 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 Gene3D G3DSA:3.20.20.70 3 369 8.3E-124 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 331 4.2E-78 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 SUPERFAMILY SSF51905 470 630 1.02E-14 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 Gene3D G3DSA:3.40.50.720 376 669 6.6E-108 T 18-10-2018 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 638 1.4E-25 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 Gene3D G3DSA:3.50.50.60 472 628 6.6E-108 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12075 f8a9e9ca8c2b572781fc40fad0eeb288 676 SUPERFAMILY SSF51395 2 368 3.66E-109 T 18-10-2018 RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 141 - T 18-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 Gene3D G3DSA:3.30.1550.10 2 72 2.2E-36 T 18-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 6.6E-66 T 18-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 6.0E-32 T 18-10-2018 IPR020784 Ribosomal protein L11, N-terminal RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 Gene3D G3DSA:1.10.10.250 73 141 6.6E-27 T 18-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 SMART SM00649 9 141 7.5E-86 T 18-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.168 T 18-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 3.1E-23 T 18-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 SUPERFAMILY SSF46906 68 141 3.01E-25 T 18-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 SUPERFAMILY SSF54747 3 73 3.79E-31 T 18-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily RU84_16980 b2d20d5cadba4f687b2b717b9e4e1856 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-15 T 18-10-2018 RU84_10530 95c4015d08c2ba73b07171f7be59377e 416 Pfam PF07690 Major Facilitator Superfamily 25 274 6.9E-41 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_10530 95c4015d08c2ba73b07171f7be59377e 416 ProSitePatterns PS00216 Sugar transport proteins signature 1. 286 303 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_10530 95c4015d08c2ba73b07171f7be59377e 416 SUPERFAMILY SSF103473 14 409 3.27E-81 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10530 95c4015d08c2ba73b07171f7be59377e 416 Gene3D G3DSA:1.20.1250.20 222 411 1.2E-29 T 18-10-2018 RU84_10530 95c4015d08c2ba73b07171f7be59377e 416 Gene3D G3DSA:1.20.1250.20 12 211 3.7E-37 T 18-10-2018 RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 Pfam PF00271 Helicase conserved C-terminal domain 533 599 1.2E-4 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 Gene3D G3DSA:1.10.8.630 13 125 2.8E-31 T 18-10-2018 RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 Gene3D G3DSA:3.40.50.300 198 389 1.1E-74 T 18-10-2018 RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 SMART SM00487 205 401 1.9E-20 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 SMART SM00490 503 600 6.8E-6 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 Pfam PF04851 Type III restriction enzyme, res subunit 208 369 7.5E-15 T 18-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 Hamap MF_00983 Probable primosomal protein N' [priA]. 16 741 24.362 T 18-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 TIGRFAM TIGR00595 priA: primosomal protein N' 231 738 1.1E-181 T 18-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 RU84_16565 abd61efa92f2f0f43833e946c66671e7 742 SUPERFAMILY SSF52540 225 610 6.23E-40 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15615 4914e82d8b18e9fdba3dd4f5922d9034 349 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 345 8.3E-116 T 18-10-2018 IPR017686 Phage/plasmid-like protein RU84_15615 4914e82d8b18e9fdba3dd4f5922d9034 349 Pfam PF06067 Domain of unknown function (DUF932) 77 329 1.2E-77 T 18-10-2018 IPR026325 Protein of unknown function DUF932 RU84_06415 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_06415 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_06415 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_06415 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_13175 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_13175 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_13175 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_13175 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_07230 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_07230 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_07230 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_07230 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_06985 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_06985 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_06985 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_06985 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_15095 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_15095 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_15095 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_15095 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_02450 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_02450 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_02450 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_02450 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_11450 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_11450 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_11450 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_11450 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_04450 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_04450 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_04450 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_04450 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_06235 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_06235 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_06235 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_06235 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_10845 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10845 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_10845 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_10845 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_06090 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_06090 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_06090 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_06090 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_09740 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_09740 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_09740 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_09740 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_07040 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_07040 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_07040 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_07040 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_10935 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10935 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_10935 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_10935 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_19320 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_19320 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_19320 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_19320 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_11765 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_11765 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_11765 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_11765 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_10690 02c65c83bd54408328a25b2050846b23 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10690 02c65c83bd54408328a25b2050846b23 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_10690 02c65c83bd54408328a25b2050846b23 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_10690 02c65c83bd54408328a25b2050846b23 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 Gene3D G3DSA:3.20.20.10 1 229 2.0E-82 T 18-10-2018 IPR029066 PLP-binding barrel RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 PIRSF PIRSF004848 1 230 4.6E-75 T 18-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 18-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 Pfam PF01168 Alanine racemase, N-terminal domain 21 224 4.9E-28 T 18-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 SUPERFAMILY SSF51419 4 222 1.05E-76 T 18-10-2018 IPR029066 PLP-binding barrel RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 223 31.164 T 18-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RU84_13720 a66e7261d5ab1d741d27794fa470659e 230 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 224 6.0E-72 T 18-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 PRINTS PR00070 Dihydrofolate reductase signature 103 117 3.5E-15 T 18-10-2018 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 PRINTS PR00070 Dihydrofolate reductase signature 19 29 3.5E-15 T 18-10-2018 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 PRINTS PR00070 Dihydrofolate reductase signature 33 41 3.5E-15 T 18-10-2018 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 PRINTS PR00070 Dihydrofolate reductase signature 46 57 3.5E-15 T 18-10-2018 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 19 41 - T 18-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 SUPERFAMILY SSF53597 6 169 8.84E-51 T 18-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 PIRSF PIRSF000194 2 169 1.2E-53 T 18-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 Pfam PF00186 Dihydrofolate reductase 8 169 1.0E-54 T 18-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 RU84_16070 6c1e24b9a8f99602cacc1232eb372b50 169 Gene3D G3DSA:3.40.430.10 6 169 1.9E-51 T 18-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 Gene3D G3DSA:1.10.1060.10 14 146 1.4E-31 T 18-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 28 135 5.9E-36 T 18-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 SUPERFAMILY SSF51971 148 402 8.24E-72 T 18-10-2018 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 Gene3D G3DSA:3.50.50.60 256 401 1.8E-45 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 460 2.7E-27 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 SUPERFAMILY SSF46548 10 160 1.2E-37 T 18-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 Gene3D G3DSA:3.40.50.720 147 255 3.6E-19 T 18-10-2018 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 473 5.8E-237 T 18-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 PRINTS PR00419 Adrenodoxin reductase family signature 151 173 3.0E-33 T 18-10-2018 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 PRINTS PR00419 Adrenodoxin reductase family signature 216 226 3.0E-33 T 18-10-2018 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 PRINTS PR00419 Adrenodoxin reductase family signature 174 187 3.0E-33 T 18-10-2018 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 PRINTS PR00419 Adrenodoxin reductase family signature 326 339 3.0E-33 T 18-10-2018 RU84_01480 23d5a44c78e91cff0fb829c783ea8751 473 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 3.0E-33 T 18-10-2018 RU84_09285 1dbf861a934d254148cb3bdcf9021975 140 Gene3D G3DSA:3.30.420.270 63 132 4.8E-10 T 18-10-2018 RU84_09285 1dbf861a934d254148cb3bdcf9021975 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 136 5.9E-29 T 18-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RU84_18695 bcd599fa48ebbdbeeab4f815f8be9931 35 SUPERFAMILY SSF50129 4 35 2.83E-5 T 18-10-2018 IPR011032 GroES-like superfamily RU84_18695 bcd599fa48ebbdbeeab4f815f8be9931 35 Gene3D G3DSA:3.90.180.10 1 35 8.8E-6 T 18-10-2018 RU84_16505 9348b0be3d9b42b2b0cdaf2674f42dc6 334 Pfam PF13271 Domain of unknown function (DUF4062) 7 85 4.6E-12 T 18-10-2018 IPR025139 Domain of unknown function DUF4062 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 PIRSF PIRSF500136 1 424 2.8E-151 T 18-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 417 4.8E-21 T 18-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 SMART SM00984 317 417 1.2E-33 T 18-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 7 411 1.3E-121 T 18-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 Gene3D G3DSA:3.40.50.720 200 423 1.3E-56 T 18-10-2018 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 Gene3D G3DSA:3.40.50.720 1 197 9.4E-58 T 18-10-2018 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 SUPERFAMILY SSF48179 201 292 1.36E-25 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 7 179 7.3E-33 T 18-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 202 290 1.1E-24 T 18-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 SUPERFAMILY SSF51735 7 191 1.7E-47 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 SUPERFAMILY SSF52413 300 417 1.1E-27 T 18-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RU84_18035 2f141a4fb0c914d529c3aebdad1c1e7d 424 PIRSF PIRSF000124 6 422 1.1E-58 T 18-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RU84_18025 5b327dee739b6cdaaf4309c55a25b75c 386 Gene3D G3DSA:3.90.1150.10 261 386 3.8E-40 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_18025 5b327dee739b6cdaaf4309c55a25b75c 386 Gene3D G3DSA:3.40.640.10 1 260 5.4E-90 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_18025 5b327dee739b6cdaaf4309c55a25b75c 386 SUPERFAMILY SSF53383 2 385 6.48E-115 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_18025 5b327dee739b6cdaaf4309c55a25b75c 386 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 2 385 1.1E-171 T 18-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase RU84_18025 5b327dee739b6cdaaf4309c55a25b75c 386 PIRSF PIRSF000390 1 386 9.3E-110 T 18-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RU84_18025 5b327dee739b6cdaaf4309c55a25b75c 386 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 10 381 5.6E-109 T 18-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Pfam PF13721 SecD export protein N-terminal TM region 2 102 8.7E-35 T 18-10-2018 IPR027398 SecD export protein N-terminal TM domain RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Pfam PF07549 SecD/SecF GG Motif 115 139 2.6E-7 T 18-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RU84_02670 85cc587f6cc601f511492a6929615a8a 633 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 3.4E-8 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 PRINTS PR00702 Acriflavin resistance protein family signature 520 544 3.4E-8 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 PRINTS PR00702 Acriflavin resistance protein family signature 595 618 3.4E-8 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Gene3D G3DSA:1.20.1640.10 468 622 6.5E-13 T 18-10-2018 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Pfam PF02355 Protein export membrane protein 455 621 5.0E-19 T 18-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Gene3D G3DSA:3.30.70.3400 221 455 2.4E-47 T 18-10-2018 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Gene3D G3DSA:3.30.1360.200 279 449 2.4E-47 T 18-10-2018 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 632 50.3 T 18-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 356 611 1.7E-71 T 18-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RU84_02670 85cc587f6cc601f511492a6929615a8a 633 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 122 618 7.9E-134 T 18-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 RU84_02670 85cc587f6cc601f511492a6929615a8a 633 SUPERFAMILY SSF82866 428 626 4.19E-45 T 18-10-2018 RU84_16010 748e37b24db09999ba197861c3ebc746 207 Hamap MF_01405 dITP/XTP pyrophosphatase. 10 207 46.965 T 18-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 RU84_16010 748e37b24db09999ba197861c3ebc746 207 SUPERFAMILY SSF52972 6 206 8.9E-67 T 18-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RU84_16010 748e37b24db09999ba197861c3ebc746 207 Gene3D G3DSA:3.90.950.10 8 207 2.3E-69 T 18-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RU84_16010 748e37b24db09999ba197861c3ebc746 207 Pfam PF01725 Ham1 family 12 204 4.4E-53 T 18-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RU84_16010 748e37b24db09999ba197861c3ebc746 207 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 12 206 7.6E-53 T 18-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 Gene3D G3DSA:3.50.50.60 117 243 1.0E-122 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 237 258 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 293 312 5.3E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 18-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 SUPERFAMILY SSF51905 2 313 3.27E-54 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 5.3E-39 T 18-10-2018 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 5.3E-39 T 18-10-2018 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.3E-39 T 18-10-2018 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 5.3E-39 T 18-10-2018 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 5.3E-39 T 18-10-2018 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 Gene3D G3DSA:3.50.50.60 9 311 1.0E-122 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 300 9.1E-50 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_13840 52afe151fabec0b6125f77f5f5f86ba1 315 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 312 3.4E-121 T 18-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Gene3D G3DSA:1.10.4030.30 31 278 4.6E-45 T 18-10-2018 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Gene3D G3DSA:3.10.50.40 179 274 4.6E-45 T 18-10-2018 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Pfam PF09312 SurA N-terminal domain 31 149 3.5E-23 T 18-10-2018 IPR015391 SurA N-terminal RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Gene3D G3DSA:3.10.50.40 279 419 2.1E-43 T 18-10-2018 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 320 341 - T 18-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Hamap MF_01183 Chaperone SurA [surA]. 13 427 25.425 T 18-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 SUPERFAMILY SSF54534 182 275 3.14E-11 T 18-10-2018 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 SUPERFAMILY SSF109998 31 192 1.09E-26 T 18-10-2018 IPR027304 Trigger factor/SurA domain superfamily RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Pfam PF13616 PPIC-type PPIASE domain 281 383 7.0E-32 T 18-10-2018 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 Pfam PF00639 PPIC-type PPIASE domain 190 270 1.2E-5 T 18-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 RU84_09465 e43420b3c0fd378ebd1d846008b0bab1 436 SUPERFAMILY SSF54534 283 384 4.25E-33 T 18-10-2018 RU84_16250 b777b9856e859f458e4de8d9ec99eced 73 SUPERFAMILY SSF50249 4 71 4.0E-29 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_16250 b777b9856e859f458e4de8d9ec99eced 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 27.121 T 18-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RU84_16250 b777b9856e859f458e4de8d9ec99eced 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 1.4E-28 T 18-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 RU84_16250 b777b9856e859f458e4de8d9ec99eced 73 Gene3D G3DSA:2.40.50.140 2 71 2.0E-37 T 18-10-2018 RU84_16250 b777b9856e859f458e4de8d9ec99eced 73 SMART SM00316 5 73 1.9E-7 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_16250 b777b9856e859f458e4de8d9ec99eced 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 71 2.3E-38 T 18-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Gene3D G3DSA:3.30.450.20 7 118 1.1E-10 T 18-10-2018 RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Pfam PF08447 PAS fold 48 105 4.3E-6 T 18-10-2018 IPR013655 PAS fold-3 GO:0005515 RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Pfam PF08448 PAS fold 141 249 3.7E-13 T 18-10-2018 IPR013656 PAS fold-4 RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SUPERFAMILY SSF55073 264 423 2.04E-44 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SUPERFAMILY SSF55785 13 119 2.27E-9 T 18-10-2018 IPR035965 PAS domain superfamily RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Gene3D G3DSA:3.30.70.270 257 435 2.7E-50 T 18-10-2018 RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Gene3D G3DSA:3.20.20.450 436 690 6.7E-68 T 18-10-2018 IPR035919 EAL domain superfamily RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 258 420 4.1E-37 T 18-10-2018 IPR000160 GGDEF domain RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SUPERFAMILY SSF141868 440 685 2.22E-64 T 18-10-2018 IPR035919 EAL domain superfamily RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SMART SM00052 431 678 1.1E-60 T 18-10-2018 IPR001633 EAL domain RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SMART SM00267 248 421 7.0E-52 T 18-10-2018 IPR000160 GGDEF domain RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Gene3D G3DSA:3.30.450.20 124 256 1.1E-11 T 18-10-2018 RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SUPERFAMILY SSF55785 121 246 1.03E-10 T 18-10-2018 IPR035965 PAS domain superfamily RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SMART SM00091 8 73 2.9E-4 T 18-10-2018 IPR000014 PAS domain RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 SMART SM00091 134 201 6.7 T 18-10-2018 IPR000014 PAS domain RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Pfam PF00563 EAL domain 439 671 2.0E-53 T 18-10-2018 IPR001633 EAL domain RU84_07600 d53b6d65d31f312b7a4ba9bb0d72e519 697 Pfam PF00990 Diguanylate cyclase, GGDEF domain 261 415 4.6E-42 T 18-10-2018 IPR000160 GGDEF domain RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Gene3D G3DSA:2.40.50.100 1 91 2.3E-22 T 18-10-2018 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Gene3D G3DSA:4.10.320.10 206 247 3.9E-12 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Gene3D G3DSA:4.10.320.10 140 182 7.3E-12 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Pfam PF02817 e3 binding domain 141 175 2.9E-10 T 18-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Pfam PF02817 e3 binding domain 206 241 5.3E-11 T 18-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 SUPERFAMILY SSF52777 259 492 5.78E-78 T 18-10-2018 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Gene3D G3DSA:3.30.559.10 252 491 8.8E-88 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 266 492 7.5E-82 T 18-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 SUPERFAMILY SSF51230 1 77 1.57E-19 T 18-10-2018 IPR011053 Single hybrid motif RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 14 43 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 Pfam PF00364 Biotin-requiring enzyme 1 62 1.5E-16 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 SUPERFAMILY SSF47005 200 243 6.54E-10 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_08790 2f9c43f9622fefe4d9aa9e1cdbee06fa 493 SUPERFAMILY SSF47005 135 178 1.7E-9 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 Pfam PF01668 SmpB protein 14 156 1.4E-56 T 18-10-2018 IPR000037 SsrA-binding protein GO:0003723 RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 Hamap MF_00023 SsrA-binding protein [smpB]. 1 157 69.264 T 18-10-2018 IPR000037 SsrA-binding protein GO:0003723 RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 SUPERFAMILY SSF74982 8 138 1.31E-49 T 18-10-2018 IPR023620 Small protein B RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 Gene3D G3DSA:2.40.280.10 6 135 3.7E-46 T 18-10-2018 IPR023620 Small protein B RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 8.0E-56 T 18-10-2018 IPR000037 SsrA-binding protein GO:0003723 RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 155 1.3E-51 T 18-10-2018 IPR000037 SsrA-binding protein GO:0003723 RU84_14320 fe1ed710eded43b9e9651d7e6fcee046 157 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 18-10-2018 IPR020081 SsrA-binding protein, conserved site RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 Gene3D G3DSA:3.30.230.20 1 127 4.3E-43 T 18-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 42.765 T 18-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 SUPERFAMILY SSF54211 3 125 5.84E-38 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 274 5.6E-97 T 18-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 297 4.3E-111 T 18-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 SUPERFAMILY SSF54211 133 277 7.59E-48 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_00755 98ebbb55657c0c743845c9ba22a2cf5a 300 Gene3D G3DSA:3.30.1700.10 128 300 1.1E-62 T 18-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 SUPERFAMILY SSF54675 1 140 4.32E-42 T 18-10-2018 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 398 2.2E-170 T 18-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 PIRSF PIRSF000484 1 386 5.2E-78 T 18-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 399 47.56 T 18-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 Gene3D G3DSA:3.20.140.10 1 403 2.0E-150 T 18-10-2018 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 398 2.9E-82 T 18-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RU84_00485 70e79fbb6dabc812ad13c1e3e0ad7f11 404 SUPERFAMILY SSF51690 121 397 3.53E-91 T 18-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Pfam PF00732 GMC oxidoreductase 6 304 4.3E-97 T 18-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Gene3D G3DSA:3.50.50.60 5 535 4.7E-174 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 SUPERFAMILY SSF51905 4 539 1.13E-82 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 SUPERFAMILY SSF54373 299 481 1.47E-64 T 18-10-2018 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 TIGRFAM TIGR01810 betA: choline dehydrogenase 7 541 7.2E-284 T 18-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Gene3D G3DSA:4.10.450.10 39 202 4.7E-174 T 18-10-2018 IPR027424 Glucose Oxidase, domain 2 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 PIRSF PIRSF000137 1 543 1.3E-137 T 18-10-2018 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Pfam PF05199 GMC oxidoreductase 397 531 4.3E-41 T 18-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 4 552 59.613 T 18-10-2018 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Gene3D G3DSA:3.30.410.40 155 478 4.7E-174 T 18-10-2018 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 Gene3D G3DSA:1.10.1220.110 100 154 4.7E-174 T 18-10-2018 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 263 277 - T 18-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RU84_13115 b6940b58dd75c6a0a8411eacf4c839d5 552 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 85 108 - T 18-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RU84_17340 d97042db9c33cbcc41a30fd6b4fa586e 559 Gene3D G3DSA:3.30.300.310 463 559 2.3E-32 T 18-10-2018 RU84_17340 d97042db9c33cbcc41a30fd6b4fa586e 559 Gene3D G3DSA:3.40.50.12780 13 462 4.7E-116 T 18-10-2018 RU84_17340 d97042db9c33cbcc41a30fd6b4fa586e 559 Pfam PF00501 AMP-binding enzyme 31 466 2.7E-110 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_17340 d97042db9c33cbcc41a30fd6b4fa586e 559 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_17340 d97042db9c33cbcc41a30fd6b4fa586e 559 SUPERFAMILY SSF56801 20 558 6.28E-152 T 18-10-2018 RU84_17340 d97042db9c33cbcc41a30fd6b4fa586e 559 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 549 3.1E-18 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 SUPERFAMILY SSF55174 3 84 1.62E-8 T 18-10-2018 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 Gene3D G3DSA:3.10.290.10 2 59 1.8E-9 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 Gene3D G3DSA:3.30.70.580 62 226 2.9E-49 T 18-10-2018 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 SMART SM00363 1 64 0.0022 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 Pfam PF00849 RNA pseudouridylate synthase 62 193 1.9E-14 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 100 114 - T 18-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 SUPERFAMILY SSF55120 61 226 2.72E-37 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 Gene3D G3DSA:3.30.70.1560 129 210 2.9E-49 T 18-10-2018 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 223 1.2E-39 T 18-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RU84_06800 e701f76b3d73a10fd4878f65b56596ed 234 Pfam PF01479 S4 domain 3 43 1.4E-7 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:3.30.70.1430 575 676 0.0 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:3.30.2090.10 181 276 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 560 577 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 PRINTS PR00702 Acriflavin resistance protein family signature 629 643 2.2E-92 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82693 680 865 7.32E-27 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82693 41 134 2.51E-26 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:3.30.2090.10 729 817 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82714 185 271 4.71E-18 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:3.30.70.1440 677 874 0.0 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1045 0.0 T 18-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:1.20.1640.10 521 1031 0.0 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:3.30.70.1320 135 333 0.0 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82714 730 817 2.22E-21 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82693 573 679 6.28E-28 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Pfam PF00873 AcrB/AcrD/AcrF family 3 1035 0.0 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:1.20.1640.10 10 520 0.0 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82693 139 331 2.77E-26 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 Gene3D G3DSA:3.30.70.1430 40 825 0.0 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82866 297 497 1.24E-53 T 18-10-2018 RU84_05730 a7ad899f565c5704760a6059dbaee4ae 1059 SUPERFAMILY SSF82866 839 1034 3.53E-43 T 18-10-2018 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 SUPERFAMILY SSF55347 292 455 2.74E-55 T 18-10-2018 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 290 297 - T 18-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 SMART SM00846 131 292 1.1E-51 T 18-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 297 454 2.6E-47 T 18-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 Gene3D G3DSA:3.40.50.720 133 467 3.4E-114 T 18-10-2018 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 SUPERFAMILY SSF51735 132 308 9.98E-44 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 286 304 1.6E-19 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 250 263 1.6E-19 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 313 329 1.6E-19 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 369 386 1.6E-19 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 410 425 1.6E-19 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 132 242 5.4E-21 T 18-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 133 466 2.3E-112 T 18-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_04845 fef07aa052accfe745c3d681ecbb49fe 485 Gene3D G3DSA:3.30.360.10 291 456 3.4E-114 T 18-10-2018 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 251 293 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 SUPERFAMILY SSF46689 197 248 4.3E-9 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 Gene3D G3DSA:1.10.10.60 193 302 1.5E-28 T 18-10-2018 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 SUPERFAMILY SSF46689 250 298 2.2E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 281 297 8.9E-7 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 281 8.9E-7 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 Pfam PF12833 Helix-turn-helix domain 220 298 4.8E-22 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 199 243 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 SMART SM00342 214 297 1.0E-32 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_05275 15d5b2a3eef5bca56856b0d6a972f6e5 302 Pfam PF12852 Cupin 2 181 1.7E-29 T 18-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 SMART SM00998 364 443 3.0E-28 T 18-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 Gene3D G3DSA:1.20.200.10 106 361 7.2E-101 T 18-10-2018 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 4 348 8.3E-116 T 18-10-2018 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 SUPERFAMILY SSF48557 4 444 2.67E-118 T 18-10-2018 IPR008948 L-Aspartase-like GO:0003824 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 18-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.5E-21 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00149 Fumarate lyase superfamily signature 101 119 2.5E-21 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00149 Fumarate lyase superfamily signature 231 258 2.5E-21 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00149 Fumarate lyase superfamily signature 146 164 2.5E-21 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 Gene3D G3DSA:1.10.40.30 363 443 1.9E-31 T 18-10-2018 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 Gene3D G3DSA:1.10.275.10 7 105 4.5E-36 T 18-10-2018 IPR024083 Fumarase/histidase, N-terminal RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 5.4E-9 T 18-10-2018 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00145 Argininosuccinate lyase family signature 100 122 5.4E-9 T 18-10-2018 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00145 Argininosuccinate lyase family signature 141 161 5.4E-9 T 18-10-2018 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 PRINTS PR00145 Argininosuccinate lyase family signature 231 255 5.4E-9 T 18-10-2018 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 Pfam PF10397 Adenylosuccinate lyase C-terminus 365 442 1.2E-19 T 18-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_07925 3be818f785b7a832ca58ecac2ce989c0 451 Pfam PF00206 Lyase 14 299 7.2E-56 T 18-10-2018 IPR022761 Fumarate lyase, N-terminal RU84_17565 828a4d48f89a6cb04738c463c0337430 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 3.5E-35 T 18-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RU84_17565 828a4d48f89a6cb04738c463c0337430 156 SUPERFAMILY SSF81573 62 121 5.1E-12 T 18-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily RU84_17565 828a4d48f89a6cb04738c463c0337430 156 Gene3D G3DSA:1.20.5.620 62 122 3.1E-13 T 18-10-2018 RU84_17565 828a4d48f89a6cb04738c463c0337430 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 2.3E-45 T 18-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 RU84_17565 828a4d48f89a6cb04738c463c0337430 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.2 T 18-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RU84_04205 0ec0dda73fea8520903e6d956dce3650 127 Gene3D G3DSA:3.30.1050.10 8 118 1.4E-12 T 18-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RU84_04205 0ec0dda73fea8520903e6d956dce3650 127 Pfam PF02036 SCP-2 sterol transfer family 34 108 1.7E-7 T 18-10-2018 IPR003033 SCP2 sterol-binding domain RU84_04205 0ec0dda73fea8520903e6d956dce3650 127 SUPERFAMILY SSF55718 4 108 3.3E-12 T 18-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RU84_04120 580ebdfddbab07bb56d98499a5ca0f72 439 Pfam PF00083 Sugar (and other) transporter 30 215 1.6E-28 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_04120 580ebdfddbab07bb56d98499a5ca0f72 439 Pfam PF00083 Sugar (and other) transporter 227 433 4.9E-13 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_04120 580ebdfddbab07bb56d98499a5ca0f72 439 SUPERFAMILY SSF103473 22 433 4.97E-66 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_04120 580ebdfddbab07bb56d98499a5ca0f72 439 Gene3D G3DSA:1.20.1250.20 20 438 3.7E-69 T 18-10-2018 RU84_04120 580ebdfddbab07bb56d98499a5ca0f72 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 320 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_04120 580ebdfddbab07bb56d98499a5ca0f72 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_04020 7c6e2cce5425ecd3be1ba4d12f0e2136 131 SUPERFAMILY SSF55298 6 128 1.01E-33 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_04020 7c6e2cce5425ecd3be1ba4d12f0e2136 131 Pfam PF01042 Endoribonuclease L-PSP 12 126 3.5E-28 T 18-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RU84_04020 7c6e2cce5425ecd3be1ba4d12f0e2136 131 Gene3D G3DSA:3.30.1330.40 1 130 4.7E-40 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 289 309 - T 18-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 Pfam PF01180 Dihydroorotate dehydrogenase 44 331 4.5E-86 T 18-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 SUPERFAMILY SSF51395 1 332 5.5E-103 T 18-10-2018 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 PIRSF PIRSF000164 13 334 4.4E-93 T 18-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 Gene3D G3DSA:3.20.20.70 2 332 3.6E-129 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 77 96 - T 18-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 332 2.8E-126 T 18-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 RU84_05980 5dd3669e2c9c1de06061e56b18289c16 334 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 333 50.631 T 18-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 RU84_09320 67419a8d99c549764158132695c9ab57 232 SUPERFAMILY SSF51366 8 230 3.14E-73 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_09320 67419a8d99c549764158132695c9ab57 232 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 8 226 2.1E-49 T 18-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_09320 67419a8d99c549764158132695c9ab57 232 SMART SM00934 7 227 1.2E-96 T 18-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_09320 67419a8d99c549764158132695c9ab57 232 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 5 232 38.123 T 18-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_09320 67419a8d99c549764158132695c9ab57 232 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 9 227 1.2E-62 T 18-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_09320 67419a8d99c549764158132695c9ab57 232 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 59 72 - T 18-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_09320 67419a8d99c549764158132695c9ab57 232 Gene3D G3DSA:3.20.20.70 2 232 2.8E-83 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 SUPERFAMILY SSF111304 3 197 4.58E-75 T 18-10-2018 IPR023627 Recombination protein RecR RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 Gene3D G3DSA:3.40.1360.10 76 197 3.4E-44 T 18-10-2018 RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 SMART SM00493 79 164 1.4E-17 T 18-10-2018 IPR006171 TOPRIM domain RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 Gene3D G3DSA:1.10.8.420 2 51 1.2E-14 T 18-10-2018 RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 194 7.4E-74 T 18-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 18-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 96.091 T 18-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 Pfam PF02132 RecR protein 41 77 1.4E-13 T 18-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger RU84_08850 f14861fef3a4f8438f75e130b55a9c49 198 Pfam PF13662 Toprim domain 81 170 8.5E-24 T 18-10-2018 IPR006171 TOPRIM domain RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 8 490 2.2E-208 T 18-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 312 326 - T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 Gene3D G3DSA:3.30.450.90 85 217 5.5E-52 T 18-10-2018 RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 Gene3D G3DSA:3.40.50.300 218 496 1.5E-114 T 18-10-2018 RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 SMART SM00382 245 368 2.1E-5 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 SUPERFAMILY SSF160246 8 70 3.66E-15 T 18-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 SUPERFAMILY SSF52540 102 490 5.65E-101 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 Gene3D G3DSA:3.30.300.160 3 84 4.3E-7 T 18-10-2018 RU84_15210 b1481e06d8073aabd3c1962b7c1ac094 496 Pfam PF00437 Type II/IV secretion system protein 119 384 4.1E-88 T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_15300 64fd15531e1dc89d25a4ec3f0fb70051 363 Pfam PF12844 Helix-turn-helix domain 10 66 6.6E-8 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_15300 64fd15531e1dc89d25a4ec3f0fb70051 363 Gene3D G3DSA:1.10.260.40 6 68 1.4E-10 T 18-10-2018 RU84_15300 64fd15531e1dc89d25a4ec3f0fb70051 363 SUPERFAMILY SSF47413 4 67 5.9E-12 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_15300 64fd15531e1dc89d25a4ec3f0fb70051 363 SMART SM00530 9 64 6.8E-9 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_15300 64fd15531e1dc89d25a4ec3f0fb70051 363 Pfam PF06114 IrrE N-terminal-like domain 157 276 1.1E-11 T 18-10-2018 IPR010359 IrrE N-terminal-like domain RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 48.242 T 18-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 SUPERFAMILY SSF51905 1 416 6.73E-54 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 Gene3D G3DSA:3.50.50.60 1 78 3.7E-12 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 Gene3D G3DSA:3.50.50.60 105 403 1.2E-53 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 Gene3D G3DSA:3.30.9.10 134 361 1.2E-53 T 18-10-2018 RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 SUPERFAMILY SSF54373 270 359 2.88E-17 T 18-10-2018 RU84_17830 89ef9320ab7e13b64a41e3e4c2a861c4 421 Pfam PF01266 FAD dependent oxidoreductase 2 396 1.2E-73 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_12060 842535a9078ebe7542e2fea2b6cc0217 365 PIRSF PIRSF029347 3 102 9.2E-15 T 18-10-2018 IPR014555 RecF-like RU84_12060 842535a9078ebe7542e2fea2b6cc0217 365 PIRSF PIRSF029347 104 348 5.8E-28 T 18-10-2018 IPR014555 RecF-like RU84_12060 842535a9078ebe7542e2fea2b6cc0217 365 SUPERFAMILY SSF52540 5 352 1.07E-29 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12060 842535a9078ebe7542e2fea2b6cc0217 365 Gene3D G3DSA:3.40.50.300 4 349 1.0E-24 T 18-10-2018 RU84_12060 842535a9078ebe7542e2fea2b6cc0217 365 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 26 311 5.7E-27 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_15755 b729f55b043c688b52105e61cce28391 111 Pfam PF13511 Domain of unknown function (DUF4124) 18 64 1.6E-6 T 18-10-2018 IPR025392 Domain of unknown function DUF4124 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82714 182 272 1.96E-23 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82866 296 497 2.22E-46 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82693 38 131 9.59E-29 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82866 810 1042 5.89E-43 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82714 726 813 6.15E-23 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82693 569 665 3.19E-23 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1053 0.0 T 18-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 SUPERFAMILY SSF82693 135 330 4.71E-25 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:3.30.70.1440 673 873 0.0 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 624 638 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.1E-110 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:1.20.1640.10 8 516 0.0 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:1.20.1640.10 517 1037 0.0 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:3.30.70.1430 38 821 0.0 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:3.30.70.1430 571 672 0.0 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 18-10-2018 RU84_03790 6844f19bcf46d7b2487fb3909833594a 1058 Pfam PF00873 AcrB/AcrD/AcrF family 1 1040 0.0 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 Gene3D G3DSA:2.20.28.140 1 33 4.0E-13 T 18-10-2018 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 18-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 PIRSF PIRSF000077 35 139 2.0E-31 T 18-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 Pfam PF00085 Thioredoxin 38 137 5.1E-28 T 18-10-2018 IPR013766 Thioredoxin domain GO:0045454 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 TIGRFAM TIGR01068 thioredoxin: thioredoxin 41 138 3.1E-31 T 18-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 SUPERFAMILY SSF52833 22 140 5.98E-35 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 Gene3D G3DSA:3.40.30.10 38 143 1.0E-30 T 18-10-2018 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 PRINTS PR00421 Thioredoxin family signature 103 114 7.2E-7 T 18-10-2018 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 PRINTS PR00421 Thioredoxin family signature 64 73 7.2E-7 T 18-10-2018 RU84_02600 497fe4627c2e79c0909afd60a046c8cf 145 PRINTS PR00421 Thioredoxin family signature 56 64 7.2E-7 T 18-10-2018 RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 422 1.6E-8 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 SMART SM00388 222 284 1.3E-11 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 SUPERFAMILY SSF55874 294 417 1.44E-15 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 Gene3D G3DSA:3.30.565.10 288 429 2.3E-14 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 Gene3D G3DSA:1.10.287.130 167 285 3.6E-19 T 18-10-2018 RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 280 7.5E-11 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_06370 0b8f807724b3b77290b91e07ff5d7d68 442 SUPERFAMILY SSF47384 205 280 3.53E-12 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_17885 d772aaef76684377ca0eb1af010272c6 123 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 10 120 9.5E-20 T 18-10-2018 IPR003477 mRNA interferase PemK-like GO:0003677 RU84_17885 d772aaef76684377ca0eb1af010272c6 123 Gene3D G3DSA:2.30.30.110 5 121 1.9E-10 T 18-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor RU84_17885 d772aaef76684377ca0eb1af010272c6 123 SUPERFAMILY SSF50118 1 89 3.92E-13 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 SUPERFAMILY SSF53706 219 679 2.3E-83 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 18-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 77 3.4E-11 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 SUPERFAMILY SSF50692 799 878 6.78E-8 T 18-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Gene3D G3DSA:3.10.20.740 1 128 1.0E-28 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 127 6.1E-15 T 18-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 645 1.1E-199 T 18-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Gene3D G3DSA:3.40.50.740 508 679 6.2E-16 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 SUPERFAMILY SSF54292 1 77 3.28E-19 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Pfam PF00384 Molybdopterin oxidoreductase 567 628 1.5E-8 T 18-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 SMART SM00929 88 128 1.7E-19 T 18-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 18-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Gene3D G3DSA:2.20.25.90 221 275 2.9E-13 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 2.0E-11 T 18-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 18-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 SUPERFAMILY SSF54862 82 213 1.05E-32 T 18-10-2018 RU84_14760 2d28899232b79175fbc3e96d87ecf867 894 SMART SM00926 221 275 1.2E-11 T 18-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_03165 bc435bc875f03b9a32fe4f403283eb6e 403 Pfam PF13679 Methyltransferase domain 160 295 2.2E-32 T 18-10-2018 IPR025714 Methyltransferase domain RU84_03165 bc435bc875f03b9a32fe4f403283eb6e 403 Gene3D G3DSA:3.40.50.150 152 277 2.6E-9 T 18-10-2018 RU84_03165 bc435bc875f03b9a32fe4f403283eb6e 403 SUPERFAMILY SSF53335 175 311 5.73E-14 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 SUPERFAMILY SSF56719 407 817 2.46E-87 T 18-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 752 812 2.5E-30 T 18-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Gene3D G3DSA:3.40.50.670 716 821 1.3E-26 T 18-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 19 818 1.4E-302 T 18-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Pfam PF01751 Toprim domain 432 544 1.2E-17 T 18-10-2018 IPR006171 TOPRIM domain RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 46 188 9.1E-23 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Gene3D G3DSA:3.10.20.690 610 702 4.3E-7 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 SUPERFAMILY SSF55874 19 231 2.1E-75 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Pfam PF00204 DNA gyrase B 234 403 5.2E-62 T 18-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 194 209 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 776 788 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 325 341 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 19 29 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 255 273 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 483 492 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 792 808 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 209 222 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 387 407 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR01159 DNA gyrase subunit B signature 373 387 2.4E-72 T 18-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 518 535 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 433 447 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 500 516 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 755 771 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 49 64 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 84 97 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 281 294 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 538 550 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 PRINTS PR00418 DNA topoisomerase II family signature 127 141 1.8E-71 T 18-10-2018 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 SMART SM00433 49 816 7.3E-270 T 18-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 16 822 101.401 T 18-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Gene3D G3DSA:3.30.565.10 15 232 3.9E-92 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 SMART SM00387 45 189 4.0E-31 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Gene3D G3DSA:3.40.50.670 409 609 1.6E-72 T 18-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 SUPERFAMILY SSF54211 234 405 6.26E-60 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 Gene3D G3DSA:3.30.230.10 233 408 7.0E-73 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_00020 957f1df7c0dce19799bf4fe0394a696b 822 ProSitePatterns PS00177 DNA topoisomerase II signature. 435 443 - T 18-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_02850 98b3257e3502e7fb720a0806142388e6 115 Gene3D G3DSA:3.10.450.40 1 114 2.7E-20 T 18-10-2018 RU84_02850 98b3257e3502e7fb720a0806142388e6 115 SUPERFAMILY SSF160719 11 112 3.66E-26 T 18-10-2018 RU84_02850 98b3257e3502e7fb720a0806142388e6 115 Pfam PF04965 Gene 25-like lysozyme 14 85 1.3E-13 T 18-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD RU84_06215 b0e71eab3c39428d51436f266df3d1a5 212 Gene3D G3DSA:1.10.357.10 9 207 3.0E-17 T 18-10-2018 RU84_06215 b0e71eab3c39428d51436f266df3d1a5 212 SUPERFAMILY SSF46689 17 89 2.52E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06215 b0e71eab3c39428d51436f266df3d1a5 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 3.6E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_19175 57a4dc3f4e0f91b6a4ade39f2deeaca1 345 Gene3D G3DSA:3.40.50.300 123 338 6.7E-54 T 18-10-2018 RU84_19175 57a4dc3f4e0f91b6a4ade39f2deeaca1 345 Gene3D G3DSA:3.30.450.90 8 118 2.1E-23 T 18-10-2018 RU84_19175 57a4dc3f4e0f91b6a4ade39f2deeaca1 345 Pfam PF00437 Type II/IV secretion system protein 17 316 3.2E-57 T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_19175 57a4dc3f4e0f91b6a4ade39f2deeaca1 345 SUPERFAMILY SSF52540 15 320 1.51E-29 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_19175 57a4dc3f4e0f91b6a4ade39f2deeaca1 345 TIGRFAM TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 17 328 5.5E-91 T 18-10-2018 IPR014155 Type IV secretion system protein VirB11 GO:0043684|GO:0044097 RU84_05610 1e779bb6d03494241c538c33a9e85977 404 SUPERFAMILY SSF103473 8 395 6.28E-59 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_05610 1e779bb6d03494241c538c33a9e85977 404 Pfam PF07690 Major Facilitator Superfamily 22 321 4.5E-33 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_05610 1e779bb6d03494241c538c33a9e85977 404 Gene3D G3DSA:1.20.1250.20 9 399 6.6E-49 T 18-10-2018 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Gene3D G3DSA:3.40.1190.10 91 317 2.9E-58 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 453 5.5E-209 T 18-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Pfam PF08245 Mur ligase middle domain 108 295 3.5E-23 T 18-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 SUPERFAMILY SSF53244 314 452 4.58E-40 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Gene3D G3DSA:3.90.190.20 318 454 5.2E-32 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 453 58.152 T 18-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Pfam PF01225 Mur ligase family, catalytic domain 2 99 1.2E-16 T 18-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 SUPERFAMILY SSF51984 1 90 2.22E-21 T 18-10-2018 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Gene3D G3DSA:3.40.50.720 1 90 6.1E-34 T 18-10-2018 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 SUPERFAMILY SSF53623 97 312 6.8E-53 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_18325 22cc3099a352a1f29a1d0731b97287ed 457 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 363 5.6E-11 T 18-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 5.6E-5 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 5.6E-5 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 5.6E-5 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 SUPERFAMILY SSF51735 3 229 2.53E-54 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 Gene3D G3DSA:3.40.50.720 2 245 9.1E-55 T 18-10-2018 RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 Pfam PF00106 short chain dehydrogenase 3 194 9.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.3E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.3E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.3E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.3E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08020 a6eb9f26e83f3a31fdfe70b1da30fdc6 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.3E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18215 fe8bf937f24efd8c8e3a96aea6562008 103 Pfam PF12796 Ankyrin repeats (3 copies) 23 100 6.8E-12 T 18-10-2018 IPR020683 Ankyrin repeat-containing domain RU84_18215 fe8bf937f24efd8c8e3a96aea6562008 103 Gene3D G3DSA:1.25.40.20 10 101 1.2E-17 T 18-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RU84_18215 fe8bf937f24efd8c8e3a96aea6562008 103 SUPERFAMILY SSF48403 21 101 3.73E-17 T 18-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RU84_12655 b0acc680241758831b82199f5b18c18b 672 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 609 49.817 T 18-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_12655 b0acc680241758831b82199f5b18c18b 672 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 234 8.6E-45 T 18-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RU84_12655 b0acc680241758831b82199f5b18c18b 672 Gene3D G3DSA:3.30.1390.30 85 160 1.0E-47 T 18-10-2018 RU84_12655 b0acc680241758831b82199f5b18c18b 672 Gene3D G3DSA:3.90.1310.10 64 244 1.0E-47 T 18-10-2018 RU84_12655 b0acc680241758831b82199f5b18c18b 672 Pfam PF00905 Penicillin binding protein transpeptidase domain 267 600 2.3E-75 T 18-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RU84_12655 b0acc680241758831b82199f5b18c18b 672 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 605 3.5E-221 T 18-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_12655 b0acc680241758831b82199f5b18c18b 672 SUPERFAMILY SSF56519 56 249 1.57E-52 T 18-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RU84_12655 b0acc680241758831b82199f5b18c18b 672 Gene3D G3DSA:3.40.710.10 245 617 1.5E-99 T 18-10-2018 RU84_12655 b0acc680241758831b82199f5b18c18b 672 SUPERFAMILY SSF56601 250 606 8.54E-97 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_09015 f047bb7ca5055c69f2984aadee35fb39 208 SUPERFAMILY SSF55144 29 176 8.89E-9 T 18-10-2018 IPR009097 Cyclic phosphodiesterase RU84_09015 f047bb7ca5055c69f2984aadee35fb39 208 Pfam PF13563 2'-5' RNA ligase superfamily 49 182 3.3E-8 T 18-10-2018 RU84_09015 f047bb7ca5055c69f2984aadee35fb39 208 Gene3D G3DSA:3.90.1140.10 22 200 1.3E-6 T 18-10-2018 RU84_04360 481e3922d7dc4de22059e3117f1e8def 249 Pfam PF01012 Electron transfer flavoprotein domain 30 206 2.1E-45 T 18-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RU84_04360 481e3922d7dc4de22059e3117f1e8def 249 Gene3D G3DSA:3.40.50.620 1 247 2.1E-84 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_04360 481e3922d7dc4de22059e3117f1e8def 249 SUPERFAMILY SSF52402 1 242 1.74E-83 T 18-10-2018 RU84_04360 481e3922d7dc4de22059e3117f1e8def 249 PIRSF PIRSF000090 1 249 4.7E-81 T 18-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RU84_04360 481e3922d7dc4de22059e3117f1e8def 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 18-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 RU84_04360 481e3922d7dc4de22059e3117f1e8def 249 SMART SM00893 23 211 9.7E-67 T 18-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RU84_12860 66ab1a75c711ac0b6909be77e50cf718 558 SUPERFAMILY SSF53649 36 551 3.05E-134 T 18-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RU84_12860 66ab1a75c711ac0b6909be77e50cf718 558 Gene3D G3DSA:3.40.720.10 35 474 9.4E-131 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_12860 66ab1a75c711ac0b6909be77e50cf718 558 Pfam PF00884 Sulfatase 38 444 9.9E-74 T 18-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RU84_12860 66ab1a75c711ac0b6909be77e50cf718 558 ProSitePatterns PS00149 Sulfatases signature 2. 138 148 - T 18-10-2018 IPR024607 Sulfatase, conserved site RU84_12860 66ab1a75c711ac0b6909be77e50cf718 558 Gene3D G3DSA:3.30.1120.10 481 557 1.6E-15 T 18-10-2018 RU84_12085 ec4b8b4a5d4d0e9fbf43bf689535e43a 420 Gene3D G3DSA:3.30.70.270 234 410 1.4E-51 T 18-10-2018 RU84_12085 ec4b8b4a5d4d0e9fbf43bf689535e43a 420 Pfam PF00990 Diguanylate cyclase, GGDEF domain 249 408 1.4E-47 T 18-10-2018 IPR000160 GGDEF domain RU84_12085 ec4b8b4a5d4d0e9fbf43bf689535e43a 420 SMART SM00267 238 412 3.1E-56 T 18-10-2018 IPR000160 GGDEF domain RU84_12085 ec4b8b4a5d4d0e9fbf43bf689535e43a 420 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 411 3.8E-51 T 18-10-2018 IPR000160 GGDEF domain RU84_12085 ec4b8b4a5d4d0e9fbf43bf689535e43a 420 SUPERFAMILY SSF55073 253 411 8.63E-46 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_02955 15f36a6a191c2aa6ea37b5ee055d502a 355 Gene3D G3DSA:3.90.25.10 201 333 3.2E-135 T 18-10-2018 RU84_02955 15f36a6a191c2aa6ea37b5ee055d502a 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 338 2.3E-153 T 18-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RU84_02955 15f36a6a191c2aa6ea37b5ee055d502a 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 3.9E-97 T 18-10-2018 IPR016040 NAD(P)-binding domain RU84_02955 15f36a6a191c2aa6ea37b5ee055d502a 355 Gene3D G3DSA:3.40.50.720 2 325 3.2E-135 T 18-10-2018 RU84_02955 15f36a6a191c2aa6ea37b5ee055d502a 355 SUPERFAMILY SSF51735 1 336 2.09E-91 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_15575 d65d0e28c8c5ec8053d0268b1426aab8 309 Gene3D G3DSA:2.40.128.130 138 309 8.3E-6 T 18-10-2018 IPR036709 Autotransporter beta-domain superfamily RU84_15575 d65d0e28c8c5ec8053d0268b1426aab8 309 SUPERFAMILY SSF103515 160 308 3.66E-8 T 18-10-2018 IPR036709 Autotransporter beta-domain superfamily RU84_15575 d65d0e28c8c5ec8053d0268b1426aab8 309 Pfam PF05275 Copper resistance protein B precursor (CopB) 106 309 1.5E-48 T 18-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 SUPERFAMILY SSF53850 88 286 1.3E-42 T 18-10-2018 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 Gene3D G3DSA:1.10.10.10 1 91 2.6E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.4E-19 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 Gene3D G3DSA:3.40.190.290 92 286 1.5E-42 T 18-10-2018 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 Pfam PF03466 LysR substrate binding domain 88 286 3.0E-43 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16290 f9282fa5020e42de674fd60da1ca63d8 286 SUPERFAMILY SSF46785 1 110 3.45E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 153 269 1.3E-18 T 18-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 Gene3D G3DSA:3.10.180.10 148 349 3.9E-68 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 12 348 5.3E-115 T 18-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 Gene3D G3DSA:3.10.180.10 1 147 1.7E-43 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 5 134 6.1E-48 T 18-10-2018 RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 SUPERFAMILY SSF54593 30 335 2.1E-75 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_00330 b8240e82cecbe29a6389f79d3e7584aa 351 PIRSF PIRSF009283 2 349 2.9E-108 T 18-10-2018 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 SUPERFAMILY SSF101386 1 96 3.6E-23 T 18-10-2018 RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 Gene3D G3DSA:1.10.287.1080 125 252 1.9E-37 T 18-10-2018 RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 Gene3D G3DSA:1.10.287.1080 1 120 3.0E-42 T 18-10-2018 RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 21 94 3.2E-24 T 18-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 159 218 7.9E-8 T 18-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 TIGRFAM TIGR00444 mazG: MazG family protein 7 249 5.6E-79 T 18-10-2018 IPR011551 NTP pyrophosphohydrolase MazG RU84_15385 58f904e723f332b11cd2b8b476e8fc29 268 SUPERFAMILY SSF101386 140 224 6.35E-19 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 3.4E-117 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_16210 619178186f905356c4d26abc05fea825 428 SUPERFAMILY SSF118215 8 412 9.55E-123 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_16210 619178186f905356c4d26abc05fea825 428 Gene3D G3DSA:1.10.3860.10 1 426 5.3E-136 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_16210 619178186f905356c4d26abc05fea825 428 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_16210 619178186f905356c4d26abc05fea825 428 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 43.525 T 18-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 8.0E-50 T 18-10-2018 RU84_16210 619178186f905356c4d26abc05fea825 428 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 8.0E-50 T 18-10-2018 RU84_11615 27f425c5ae57e166f4912ab338890a7e 297 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 69 85 - T 18-10-2018 IPR002168 Lipase, GDXG, putative histidine active site GO:0016787 Reactome: R-HSA-163560 RU84_11615 27f425c5ae57e166f4912ab338890a7e 297 Pfam PF07859 alpha/beta hydrolase fold 69 270 2.0E-56 T 18-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RU84_11615 27f425c5ae57e166f4912ab338890a7e 297 SUPERFAMILY SSF53474 29 293 8.84E-56 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_11615 27f425c5ae57e166f4912ab338890a7e 297 Gene3D G3DSA:3.40.50.1820 7 296 1.2E-80 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 99 117 2.2E-21 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.2E-21 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 2.2E-21 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.2E-21 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.2E-21 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 290 2.1E-28 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PIRSF PIRSF037495 1 420 1.1E-109 T 18-10-2018 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 Gene3D G3DSA:1.10.10.1100 331 394 1.1E-10 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.0E-10 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 1.0E-10 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 236 250 1.0E-10 T 18-10-2018 RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 Gene3D G3DSA:3.50.50.60 111 243 1.4E-43 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 SUPERFAMILY SSF51905 1 308 1.71E-39 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10800 a826dacbd10a4fa1894cd7a859a4b6c0 420 Gene3D G3DSA:3.50.50.60 5 286 1.4E-43 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 5.8E-20 T 18-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF01138 3' exoribonuclease family, domain 1 18 145 1.0E-18 T 18-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Gene3D G3DSA:2.40.50.140 624 696 3.4E-29 T 18-10-2018 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF55666 452 550 2.38E-28 T 18-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF00575 S1 RNA binding domain 621 692 6.0E-19 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SMART SM00316 622 692 3.5E-26 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF50249 622 695 1.64E-20 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF54791 558 642 4.55E-23 T 18-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 18-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 322 8.2E-21 T 18-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Gene3D G3DSA:3.30.230.70 233 551 9.2E-111 T 18-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Gene3D G3DSA:3.30.230.70 1 231 6.8E-75 T 18-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 PIRSF PIRSF005499 3 697 7.3E-284 T 18-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Gene3D G3DSA:3.30.1370.10 552 623 9.7E-20 T 18-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 5 695 29.772 T 18-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF46915 240 323 9.68E-18 T 18-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF00013 KH domain 559 615 2.1E-12 T 18-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF54211 3 145 1.16E-43 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF54211 299 490 4.1E-45 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SUPERFAMILY SSF55666 146 236 4.77E-30 T 18-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF03725 3' exoribonuclease family, domain 2 461 529 1.7E-5 T 18-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 4.2E-14 T 18-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_16600 b9aebe34a759f1a590eb5a8f88cf6c04 697 SMART SM00322 554 619 3.5E-13 T 18-10-2018 IPR004087 K Homology domain GO:0003676 RU84_03435 6a5e7a58c9add605562146750ee0be35 167 SUPERFAMILY SSF141523 8 161 3.27E-22 T 18-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RU84_03435 6a5e7a58c9add605562146750ee0be35 167 Gene3D G3DSA:2.40.440.10 3 167 9.3E-24 T 18-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RU84_03435 6a5e7a58c9add605562146750ee0be35 167 Pfam PF03734 L,D-transpeptidase catalytic domain 11 157 7.7E-15 T 18-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 1.8E-17 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 6 23 1.8E-17 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 98 111 1.8E-17 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 76 91 1.8E-17 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 42 58 1.8E-17 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 SMART SM00226 4 141 8.5E-57 T 18-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 SUPERFAMILY SSF52788 2 141 1.44E-40 T 18-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 138 2.1E-36 T 18-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RU84_18045 41de97f26f2a6a25ea6536345f60d882 142 Gene3D G3DSA:3.40.50.2300 1 142 2.5E-45 T 18-10-2018 RU84_17435 3b9a8e0efd2c80ccf0c3a0c3ed58d09b 180 Pfam PF13527 Acetyltransferase (GNAT) domain 7 127 1.1E-16 T 18-10-2018 RU84_17435 3b9a8e0efd2c80ccf0c3a0c3ed58d09b 180 SUPERFAMILY SSF55729 1 128 7.89E-24 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_17435 3b9a8e0efd2c80ccf0c3a0c3ed58d09b 180 Gene3D G3DSA:3.40.630.30 1 180 8.0E-44 T 18-10-2018 RU84_16150 57110626d4664968737b5022a8a688e9 659 Gene3D G3DSA:1.10.10.160 109 190 1.1E-70 T 18-10-2018 IPR013986 DExx box DNA helicase domain superfamily RU84_16150 57110626d4664968737b5022a8a688e9 659 SUPERFAMILY SSF52540 6 628 9.35E-123 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16150 57110626d4664968737b5022a8a688e9 659 Gene3D G3DSA:3.40.50.300 10 272 1.1E-70 T 18-10-2018 RU84_16150 57110626d4664968737b5022a8a688e9 659 Pfam PF13361 UvrD-like helicase C-terminal domain 278 597 1.7E-39 T 18-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RU84_16150 57110626d4664968737b5022a8a688e9 659 Gene3D G3DSA:1.10.486.10 382 522 1.4E-66 T 18-10-2018 RU84_16150 57110626d4664968737b5022a8a688e9 659 Gene3D G3DSA:3.40.50.300 282 621 1.4E-66 T 18-10-2018 RU84_16150 57110626d4664968737b5022a8a688e9 659 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 270 1.8E-54 T 18-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RU84_19060 c0e6ca88115aa66847162269bf52e5a2 343 Pfam PF11412 Disulphide bond corrector protein DsbC 32 145 1.8E-30 T 18-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RU84_19060 c0e6ca88115aa66847162269bf52e5a2 343 SUPERFAMILY SSF74863 32 145 1.57E-31 T 18-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RU84_19060 c0e6ca88115aa66847162269bf52e5a2 343 Gene3D G3DSA:3.30.360.10 155 281 1.1E-31 T 18-10-2018 RU84_19060 c0e6ca88115aa66847162269bf52e5a2 343 Gene3D G3DSA:3.30.360.10 282 343 3.3E-17 T 18-10-2018 RU84_19060 c0e6ca88115aa66847162269bf52e5a2 343 Gene3D G3DSA:2.60.40.1250 24 154 3.6E-38 T 18-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 897 16.87 T 18-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Pfam PF11987 Translation-initiation factor 2 684 789 5.5E-35 T 18-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 ProSitePatterns PS01176 Initiation factor 2 signature. 850 872 - T 18-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Gene3D G3DSA:3.40.50.300 397 570 6.1E-72 T 18-10-2018 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Pfam PF00009 Elongation factor Tu GTP binding domain 404 559 6.8E-35 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 SUPERFAMILY SSF50447 572 655 2.37E-23 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_16720 0a9d122fe2915536409d8912f01b5078 899 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 401 558 7.1E-33 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Gene3D G3DSA:3.30.56.50 2 51 1.1E-6 T 18-10-2018 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 SUPERFAMILY SSF52156 677 806 2.09E-34 T 18-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Gene3D G3DSA:2.40.30.10 801 898 2.8E-29 T 18-10-2018 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 98 5.6E-11 T 18-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial RU84_16720 0a9d122fe2915536409d8912f01b5078 899 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 318 899 1.4E-249 T 18-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 SUPERFAMILY SSF50447 801 897 1.43E-28 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 325 372 1.9E-13 T 18-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal RU84_16720 0a9d122fe2915536409d8912f01b5078 899 SUPERFAMILY SSF52540 394 566 1.84E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Gene3D G3DSA:2.40.30.10 571 688 7.1E-40 T 18-10-2018 RU84_16720 0a9d122fe2915536409d8912f01b5078 899 SUPERFAMILY SSF46955 3 51 2.75E-8 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_16720 0a9d122fe2915536409d8912f01b5078 899 Gene3D G3DSA:3.40.50.10050 693 800 1.0E-35 T 18-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SUPERFAMILY SSF52540 354 467 4.43E-18 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Pfam PF00271 Helicase conserved C-terminal domain 807 911 1.4E-16 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SMART SM00982 1010 1110 1.3E-46 T 18-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:2.30.30.840 485 543 1.6E-229 T 18-10-2018 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SUPERFAMILY SSF52540 8 346 2.13E-86 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SMART SM01058 481 578 2.2E-43 T 18-10-2018 IPR003711 CarD-like/TRCF domain RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Pfam PF00270 DEAD/DEAH box helicase 609 764 5.8E-20 T 18-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:3.30.2060.10 128 213 1.6E-100 T 18-10-2018 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SUPERFAMILY SSF52540 525 785 7.72E-60 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Pfam PF02559 CarD-like/TRCF domain 482 575 1.7E-21 T 18-10-2018 IPR003711 CarD-like/TRCF domain RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1084 0.0 T 18-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 39 1149 27.245 T 18-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:3.40.50.300 544 783 1.6E-229 T 18-10-2018 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SUPERFAMILY SSF141259 473 550 6.93E-22 T 18-10-2018 IPR036101 CarD-like/TRCF domain superfamily RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:3.90.1150.50 1006 1152 2.2E-44 T 18-10-2018 IPR037235 TRCF-like, C-terminal domain RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SUPERFAMILY SSF52540 784 992 2.25E-45 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:3.40.50.11180 27 338 1.6E-100 T 18-10-2018 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:3.40.50.300 480 991 1.6E-229 T 18-10-2018 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SUPERFAMILY SSF143517 997 1148 7.85E-43 T 18-10-2018 IPR037235 TRCF-like, C-terminal domain RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SMART SM00490 828 912 2.5E-17 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Pfam PF03461 TRCF domain 1011 1101 2.8E-27 T 18-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 Gene3D G3DSA:3.40.50.11140 360 455 9.4E-9 T 18-10-2018 RU84_09185 ee3fda76dbd3e933946d6b9216fc681c 1153 SMART SM00487 602 797 6.4E-31 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_10770 c352a6424f074e4797d58a044338fec4 700 SUPERFAMILY SSF53720 26 524 4.32E-82 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_10770 c352a6424f074e4797d58a044338fec4 700 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 26 698 1.1E-299 T 18-10-2018 IPR011966 Phenylacetic acid degradation protein PaaN KEGG: 00360+3.3.2.12+1.2.1.91 RU84_10770 c352a6424f074e4797d58a044338fec4 700 Pfam PF01575 MaoC like domain 560 662 1.1E-28 T 18-10-2018 IPR002539 MaoC-like dehydratase domain RU84_10770 c352a6424f074e4797d58a044338fec4 700 SUPERFAMILY SSF54637 549 699 1.0E-38 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_10770 c352a6424f074e4797d58a044338fec4 700 Gene3D G3DSA:3.10.129.10 545 699 1.3E-43 T 18-10-2018 RU84_10770 c352a6424f074e4797d58a044338fec4 700 Gene3D G3DSA:3.40.605.10 32 507 1.5E-148 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_10770 c352a6424f074e4797d58a044338fec4 700 Gene3D G3DSA:3.40.309.10 280 495 1.5E-148 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_10770 c352a6424f074e4797d58a044338fec4 700 Pfam PF00171 Aldehyde dehydrogenase family 34 521 6.4E-68 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_03935 2402886506c70fff0b228849aebcd648 236 SUPERFAMILY SSF54292 3 105 4.01E-27 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_03935 2402886506c70fff0b228849aebcd648 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 110 4.0E-31 T 18-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03935 2402886506c70fff0b228849aebcd648 236 Gene3D G3DSA:1.10.1060.10 106 235 1.1E-55 T 18-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RU84_03935 2402886506c70fff0b228849aebcd648 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 10 228 7.5E-84 T 18-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03935 2402886506c70fff0b228849aebcd648 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 6.2E-9 T 18-10-2018 RU84_03935 2402886506c70fff0b228849aebcd648 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_03935 2402886506c70fff0b228849aebcd648 236 SUPERFAMILY SSF46548 106 233 2.27E-37 T 18-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RU84_03935 2402886506c70fff0b228849aebcd648 236 Gene3D G3DSA:3.10.20.30 1 105 9.7E-36 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 Gene3D G3DSA:3.40.50.970 352 535 1.1E-45 T 18-10-2018 RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 SUPERFAMILY SSF52467 159 348 4.31E-33 T 18-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 SUPERFAMILY SSF52518 2 178 4.71E-40 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 526 1.8E-30 T 18-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 323 2.6E-25 T 18-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 175 5.8E-44 T 18-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 SUPERFAMILY SSF52518 362 531 8.22E-45 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 Gene3D G3DSA:3.40.50.970 1 179 4.6E-44 T 18-10-2018 RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 18-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RU84_12960 3bcf89e6a0de6fde1bf3df40190199dd 546 Gene3D G3DSA:3.40.50.1220 186 351 2.4E-32 T 18-10-2018 RU84_03000 880616ae29f8a7dec965463dbdf66ad4 691 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 148 7.5E-11 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_03000 880616ae29f8a7dec965463dbdf66ad4 691 Pfam PF00593 TonB dependent receptor 316 689 2.2E-38 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_03000 880616ae29f8a7dec965463dbdf66ad4 691 Gene3D G3DSA:2.170.130.10 38 159 2.9E-25 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_03000 880616ae29f8a7dec965463dbdf66ad4 691 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 674 691 - T 18-10-2018 IPR010917 TonB-dependent receptor, conserved site RU84_03000 880616ae29f8a7dec965463dbdf66ad4 691 SUPERFAMILY SSF56935 32 691 4.21E-88 T 18-10-2018 RU84_02680 18b96d2cf0fd1dee99e8e9586549f2af 377 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 8 369 4.4E-172 T 18-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RU84_02680 18b96d2cf0fd1dee99e8e9586549f2af 377 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 7 368 2.8E-163 T 18-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RU84_02680 18b96d2cf0fd1dee99e8e9586549f2af 377 SUPERFAMILY SSF51713 1 365 8.89E-163 T 18-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RU84_02680 18b96d2cf0fd1dee99e8e9586549f2af 377 Gene3D G3DSA:3.20.20.105 1 368 4.0E-171 T 18-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RU84_02680 18b96d2cf0fd1dee99e8e9586549f2af 377 Pfam PF01702 Queuine tRNA-ribosyltransferase 127 362 8.5E-93 T 18-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RU84_02680 18b96d2cf0fd1dee99e8e9586549f2af 377 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 365 57.131 T 18-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 RU84_04610 3404c3240b02628b31006af0438a49d7 105 Gene3D G3DSA:3.30.70.120 1 104 3.7E-41 T 18-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RU84_04610 3404c3240b02628b31006af0438a49d7 105 SUPERFAMILY SSF102705 2 100 2.43E-23 T 18-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily RU84_01455 1c976152885796aa3623fd448c3104b6 721 Pfam PF03958 Bacterial type II/III secretion system short domain 360 455 1.0E-12 T 18-10-2018 IPR005644 NolW-like RU84_01455 1c976152885796aa3623fd448c3104b6 721 Gene3D G3DSA:3.55.50.30 261 331 3.8E-9 T 18-10-2018 RU84_01455 1c976152885796aa3623fd448c3104b6 721 Pfam PF11741 AMIN domain 39 118 3.0E-7 T 18-10-2018 IPR021731 AMIN domain RU84_01455 1c976152885796aa3623fd448c3104b6 721 Gene3D G3DSA:2.60.40.3500 17 125 3.2E-5 T 18-10-2018 RU84_01455 1c976152885796aa3623fd448c3104b6 721 SMART SM00965 286 334 5.5E-11 T 18-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RU84_01455 1c976152885796aa3623fd448c3104b6 721 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 659 692 - T 18-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 RU84_01455 1c976152885796aa3623fd448c3104b6 721 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 261 714 9.2E-165 T 18-10-2018 IPR013355 Type IV pilus secretin PilQ RU84_01455 1c976152885796aa3623fd448c3104b6 721 Pfam PF00263 Bacterial type II and III secretion system protein 555 713 2.0E-49 T 18-10-2018 IPR004846 Type II/III secretion system GO:0009306 RU84_01455 1c976152885796aa3623fd448c3104b6 721 PRINTS PR00811 Bacterial general secretion pathway protein D signature 551 575 3.4E-19 T 18-10-2018 IPR001775 GspD/PilQ family RU84_01455 1c976152885796aa3623fd448c3104b6 721 PRINTS PR00811 Bacterial general secretion pathway protein D signature 455 465 3.4E-19 T 18-10-2018 IPR001775 GspD/PilQ family RU84_01455 1c976152885796aa3623fd448c3104b6 721 PRINTS PR00811 Bacterial general secretion pathway protein D signature 701 715 3.4E-19 T 18-10-2018 IPR001775 GspD/PilQ family RU84_01455 1c976152885796aa3623fd448c3104b6 721 PRINTS PR00811 Bacterial general secretion pathway protein D signature 678 696 3.4E-19 T 18-10-2018 IPR001775 GspD/PilQ family RU84_01455 1c976152885796aa3623fd448c3104b6 721 Gene3D G3DSA:2.60.40.3470 126 247 3.2E-27 T 18-10-2018 RU84_01455 1c976152885796aa3623fd448c3104b6 721 Pfam PF07660 Secretin and TonB N terminus short domain 291 333 2.5E-9 T 18-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 RU84_02520 61128f3989b348036d863d5194016225 444 Pfam PF01926 50S ribosome-binding GTPase 202 319 5.7E-20 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 Pfam PF13167 GTP-binding GTPase N-terminal 28 113 1.0E-30 T 18-10-2018 IPR025121 GTPase HflX, N-terminal RU84_02520 61128f3989b348036d863d5194016225 444 PIRSF PIRSF006809 5 421 1.4E-136 T 18-10-2018 IPR016496 GTPase HflX GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 SUPERFAMILY SSF52540 199 373 6.85E-40 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_02520 61128f3989b348036d863d5194016225 444 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 223 241 2.4E-7 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 202 222 2.4E-7 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 269 287 2.4E-7 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 13 361 2.3E-144 T 18-10-2018 IPR016496 GTPase HflX GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 Gene3D G3DSA:3.40.50.300 199 366 3.0E-36 T 18-10-2018 RU84_02520 61128f3989b348036d863d5194016225 444 Hamap MF_00900 GTPase HflX [hflX]. 28 390 46.215 T 18-10-2018 IPR016496 GTPase HflX GO:0005525 RU84_02520 61128f3989b348036d863d5194016225 444 Pfam PF16360 GTP-binding GTPase Middle Region 115 194 1.1E-27 T 18-10-2018 IPR032305 GTP-binding protein, middle domain RU84_02520 61128f3989b348036d863d5194016225 444 Gene3D G3DSA:3.40.50.11060 18 139 3.2E-38 T 18-10-2018 RU84_02610 8bdd4e8faf1266108c9947657ef731f7 164 Pfam PF14539 Domain of unknown function (DUF4442) 24 156 3.9E-33 T 18-10-2018 IPR027961 Protein of unknown function DUF4442 RU84_02610 8bdd4e8faf1266108c9947657ef731f7 164 Gene3D G3DSA:3.10.129.10 10 158 2.8E-35 T 18-10-2018 RU84_02610 8bdd4e8faf1266108c9947657ef731f7 164 SUPERFAMILY SSF54637 25 163 4.22E-21 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_08225 36495617920afec11b1a312aaecf3c35 339 SUPERFAMILY SSF56281 78 327 4.6E-36 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_08225 36495617920afec11b1a312aaecf3c35 339 Gene3D G3DSA:3.60.15.10 62 335 1.1E-78 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_08225 36495617920afec11b1a312aaecf3c35 339 PIRSF PIRSF038896 7 330 3.3E-91 T 18-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 RU84_08225 36495617920afec11b1a312aaecf3c35 339 Pfam PF12706 Beta-lactamase superfamily domain 95 287 1.7E-44 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 1.8E-195 T 18-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Pfam PF12804 MobA-like NTP transferase domain 5 126 4.7E-20 T 18-10-2018 IPR025877 MobA-like NTP transferase RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 SUPERFAMILY SSF51161 252 433 1.26E-50 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Gene3D G3DSA:3.90.550.10 1 224 2.5E-66 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 SUPERFAMILY SSF53448 1 249 4.17E-64 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.879 T 18-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 400 428 - T 18-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 2.0E-7 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 296 6.7E-5 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 392 426 3.7E-9 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_00430 99d39bdc5c66f739aa02edfa157aee17 454 Gene3D G3DSA:2.160.10.10 225 453 3.4E-72 T 18-10-2018 RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 Gene3D G3DSA:3.40.190.10 121 220 1.5E-108 T 18-10-2018 RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 SUPERFAMILY SSF53850 41 274 3.38E-50 T 18-10-2018 RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 SMART SM00062 42 257 4.3E-21 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 Gene3D G3DSA:3.40.190.10 43 317 1.5E-108 T 18-10-2018 RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 Gene3D G3DSA:1.10.8.450 252 286 1.5E-108 T 18-10-2018 RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 43 325 1.4E-78 T 18-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 RU84_18155 c5f7aa9763b17139cd2e71f2f011c752 327 Pfam PF13379 NMT1-like family 39 265 8.2E-20 T 18-10-2018 RU84_17175 115e41d956ce6aafdb2a277187bd16e3 99 Gene3D G3DSA:2.30.30.90 12 96 1.5E-23 T 18-10-2018 IPR038157 Ferrous iron transporter, core domain RU84_17175 115e41d956ce6aafdb2a277187bd16e3 99 Pfam PF04023 FeoA domain 13 92 8.2E-16 T 18-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RU84_17175 115e41d956ce6aafdb2a277187bd16e3 99 SUPERFAMILY SSF50037 18 93 4.81E-14 T 18-10-2018 IPR008988 Transcriptional repressor, C-terminal RU84_17175 115e41d956ce6aafdb2a277187bd16e3 99 SMART SM00899 13 93 6.9E-16 T 18-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 ProSitePatterns PS00543 HlyD family secretion proteins signature. 361 383 - T 18-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Gene3D G3DSA:2.40.50.100 246 282 1.4E-17 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Gene3D G3DSA:2.40.50.100 62 95 6.1E-11 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 SUPERFAMILY SSF111369 71 207 6.15E-8 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 258 279 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 376 396 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 315 338 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 291 315 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 361 376 9.6E-40 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 187 396 1.9E-62 T 18-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Pfam PF13437 HlyD family secretion protein 246 354 1.2E-17 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Gene3D G3DSA:2.40.30.170 50 60 6.1E-11 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Gene3D G3DSA:2.40.30.170 283 374 1.4E-17 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Gene3D G3DSA:1.10.287.470 96 124 6.1E-11 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Gene3D G3DSA:1.10.287.470 149 245 1.4E-17 T 18-10-2018 RU84_11070 279cb32be8c45543e4a76acfb587a317 396 Pfam PF13533 Biotin-lipoyl like 68 100 5.5E-9 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 143 425 1.3E-131 T 18-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 ProSitePatterns PS00164 Enolase signature. 338 351 - T 18-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 Pfam PF03952 Enolase, N-terminal domain 4 134 1.4E-57 T 18-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 Gene3D G3DSA:3.30.390.10 1 127 2.9E-54 T 18-10-2018 IPR029017 Enolase-like, N-terminal RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 SUPERFAMILY SSF51604 142 416 1.3E-125 T 18-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PRINTS PR00148 Enolase signature 367 384 1.4E-42 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PRINTS PR00148 Enolase signature 164 177 1.4E-42 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PRINTS PR00148 Enolase signature 37 51 1.4E-42 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PRINTS PR00148 Enolase signature 338 352 1.4E-42 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PRINTS PR00148 Enolase signature 107 123 1.4E-42 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PRINTS PR00148 Enolase signature 315 326 1.4E-42 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 Gene3D G3DSA:3.20.20.120 128 429 9.6E-132 T 18-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 SMART SM01192 142 427 1.4E-213 T 18-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 PIRSF PIRSF001400 1 427 2.1E-190 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 SMART SM01193 4 134 1.9E-91 T 18-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 5.6E-201 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 Hamap MF_00318 Enolase [eno]. 2 415 44.088 T 18-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_07890 6934bd1eabbacd9025867a813d640fe4 429 SUPERFAMILY SSF54826 4 137 1.48E-54 T 18-10-2018 RU84_18385 3829634e857eff405a39f44b4ad2683a 328 Pfam PF01545 Cation efflux family 26 241 1.6E-39 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_18385 3829634e857eff405a39f44b4ad2683a 328 Gene3D G3DSA:1.20.1510.10 20 241 3.9E-31 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_18385 3829634e857eff405a39f44b4ad2683a 328 SUPERFAMILY SSF161111 19 242 5.23E-48 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_18385 3829634e857eff405a39f44b4ad2683a 328 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 22 315 1.4E-65 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 PIRSF PIRSF005572 2 385 3.0E-128 T 18-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 SUPERFAMILY SSF53383 3 392 2.58E-107 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 198 217 - T 18-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 Pfam PF00266 Aminotransferase class-V 5 369 5.5E-84 T 18-10-2018 IPR000192 Aminotransferase class V domain RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 Gene3D G3DSA:3.90.1150.10 5 377 3.3E-158 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 396 54.083 T 18-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 405 1.2E-208 T 18-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 RU84_09145 f7d5de44ae5d7e9173ce68a30b69010d 405 Gene3D G3DSA:3.40.640.10 16 263 3.3E-158 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 Pfam PF00633 Helix-hairpin-helix motif 105 132 3.2E-8 T 18-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 SUPERFAMILY SSF48150 6 211 4.24E-71 T 18-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 39 173 2.0E-17 T 18-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 Gene3D G3DSA:1.10.340.30 26 137 1.0E-76 T 18-10-2018 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 192 208 2.9E-6 T 18-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 Gene3D G3DSA:1.10.1670.10 16 208 1.0E-76 T 18-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 SMART SM00478 43 190 2.4E-52 T 18-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 Hamap MF_00942 Endonuclease III [nth]. 3 214 36.948 T 18-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 TIGRFAM TIGR01083 nth: endonuclease III 9 199 8.7E-84 T 18-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 PIRSF PIRSF001435 3 214 3.8E-53 T 18-10-2018 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 192 208 - T 18-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_12635 cd548d44368a2c27a464e9dc139a81dc 230 ProSitePatterns PS01155 Endonuclease III family signature. 107 136 - T 18-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 RU84_02700 94a0f938fc3f4f30a1afc2feac12b272 345 Gene3D G3DSA:3.40.1780.10 14 340 3.9E-115 T 18-10-2018 RU84_02700 94a0f938fc3f4f30a1afc2feac12b272 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 341 45.066 T 18-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RU84_02700 94a0f938fc3f4f30a1afc2feac12b272 345 SUPERFAMILY SSF111337 1 340 7.32E-128 T 18-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RU84_02700 94a0f938fc3f4f30a1afc2feac12b272 345 Gene3D G3DSA:2.40.10.240 63 159 3.9E-115 T 18-10-2018 RU84_02700 94a0f938fc3f4f30a1afc2feac12b272 345 Pfam PF02547 Queuosine biosynthesis protein 3 340 5.9E-126 T 18-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RU84_02700 94a0f938fc3f4f30a1afc2feac12b272 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 340 5.6E-136 T 18-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 RU84_04545 10869378991efb0e6223a25202f227ec 187 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 2 179 29.811 T 18-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 RU84_04545 10869378991efb0e6223a25202f227ec 187 SUPERFAMILY SSF103088 70 177 4.97E-35 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_04545 10869378991efb0e6223a25202f227ec 187 Pfam PF00691 OmpA family 79 173 1.4E-21 T 18-10-2018 IPR006665 OmpA-like domain RU84_04545 10869378991efb0e6223a25202f227ec 187 Gene3D G3DSA:3.30.1330.60 67 180 2.5E-42 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_04545 10869378991efb0e6223a25202f227ec 187 PRINTS PR01021 OMPA domain signature 109 124 2.4E-18 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_04545 10869378991efb0e6223a25202f227ec 187 PRINTS PR01021 OMPA domain signature 79 101 2.4E-18 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_04545 10869378991efb0e6223a25202f227ec 187 PRINTS PR01021 OMPA domain signature 124 140 2.4E-18 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_04545 10869378991efb0e6223a25202f227ec 187 ProSitePatterns PS01068 OmpA-like domain. 111 155 - T 18-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RU84_04545 10869378991efb0e6223a25202f227ec 187 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 77 179 1.4E-43 T 18-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 RU84_16775 60b92aca2c60b3b51cc3fd32a1ee2498 198 SUPERFAMILY SSF52540 1 196 3.62E-38 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16775 60b92aca2c60b3b51cc3fd32a1ee2498 198 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 187 6.5E-57 T 18-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RU84_16775 60b92aca2c60b3b51cc3fd32a1ee2498 198 Pfam PF01121 Dephospho-CoA kinase 4 178 7.5E-65 T 18-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RU84_16775 60b92aca2c60b3b51cc3fd32a1ee2498 198 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 27.413 T 18-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 RU84_16775 60b92aca2c60b3b51cc3fd32a1ee2498 198 Gene3D G3DSA:3.40.50.300 1 198 6.2E-69 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:1.20.1640.10 510 1018 0.0 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82866 828 1021 2.75E-41 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82693 137 331 6.1E-22 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82693 39 131 8.2E-26 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82714 183 273 2.88E-22 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.4E-99 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82714 722 804 2.49E-18 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:3.30.70.1440 666 861 0.0 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82693 669 844 8.63E-13 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1029 0.0 T 18-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82693 562 668 1.41E-20 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 SUPERFAMILY SSF82866 297 498 4.19E-50 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:3.30.70.1430 39 814 0.0 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:1.20.1640.10 9 509 0.0 T 18-10-2018 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Pfam PF00873 AcrB/AcrD/AcrF family 3 1021 0.0 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_04180 1dc5ff8c69c10a1803c4420e8d379d20 1031 Gene3D G3DSA:3.30.70.1430 564 665 0.0 T 18-10-2018 RU84_09220 bbe2d1d439d68c77108ec29a6841023d 244 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 27 97 4.2E-7 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_09220 bbe2d1d439d68c77108ec29a6841023d 244 Gene3D G3DSA:3.40.50.1240 26 212 5.9E-11 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_09220 bbe2d1d439d68c77108ec29a6841023d 244 SUPERFAMILY SSF53254 27 196 6.94E-15 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_10805 7332b331672c51beb37d7e1eedee4421 76 Gene3D G3DSA:3.10.20.440 1 76 1.3E-11 T 18-10-2018 RU84_10805 7332b331672c51beb37d7e1eedee4421 76 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 1 76 5.6E-18 T 18-10-2018 RU84_10805 7332b331672c51beb37d7e1eedee4421 76 SUPERFAMILY SSF54292 1 76 1.26E-18 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 SUPERFAMILY SSF54686 1 134 3.66E-54 T 18-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 Gene3D G3DSA:3.90.1170.10 1 137 3.8E-55 T 18-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 3.3E-47 T 18-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 36.874 T 18-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 7.8E-37 T 18-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 7.8E-37 T 18-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 7.8E-37 T 18-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 7.8E-37 T 18-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 18-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02045 29b4739ed3e5a65db03daab99dec320f 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 4.4E-57 T 18-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15555 97c327134c24a081471034ef871685c7 1048 SUPERFAMILY SSF82693 46 126 2.88E-18 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 SUPERFAMILY SSF82714 185 270 9.02E-20 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_15555 97c327134c24a081471034ef871685c7 1048 Pfam PF00873 AcrB/AcrD/AcrF family 5 1040 2.3E-241 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:3.30.2090.10 181 272 6.3E-258 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:3.30.70.1430 567 666 6.3E-258 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:3.30.70.1320 135 330 6.3E-258 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:3.30.70.1430 42 817 6.3E-258 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 SUPERFAMILY SSF82866 805 1045 5.49E-43 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:1.20.1640.10 516 1037 6.3E-258 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 1.0E-26 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.0E-26 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.0E-26 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.0E-26 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.0E-26 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 1.0E-26 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:1.20.1640.10 12 515 6.3E-258 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:3.30.2090.10 721 809 6.3E-258 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_15555 97c327134c24a081471034ef871685c7 1048 SUPERFAMILY SSF82866 294 506 4.19E-38 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 Gene3D G3DSA:3.30.70.1440 667 867 6.3E-258 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 SUPERFAMILY SSF82693 137 328 2.88E-22 T 18-10-2018 RU84_15555 97c327134c24a081471034ef871685c7 1048 SUPERFAMILY SSF82714 723 807 7.46E-18 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_15555 97c327134c24a081471034ef871685c7 1048 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1045 0.0 T 18-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 RU84_09725 3332bcb6466c5e2989d2c89e17284a33 410 SUPERFAMILY SSF56349 106 354 1.15E-25 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_09725 3332bcb6466c5e2989d2c89e17284a33 410 Gene3D G3DSA:1.10.443.10 217 377 2.9E-11 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_09725 3332bcb6466c5e2989d2c89e17284a33 410 Pfam PF00589 Phage integrase family 227 350 4.7E-6 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_09725 3332bcb6466c5e2989d2c89e17284a33 410 Gene3D G3DSA:1.10.150.130 101 207 3.5E-7 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_01040 3ed81add7198ffdc366b7640d381438c 140 SUPERFAMILY SSF51316 1 136 1.78E-44 T 18-10-2018 IPR011057 Mss4-like superfamily RU84_01040 3ed81add7198ffdc366b7640d381438c 140 Gene3D G3DSA:2.170.150.70 5 120 8.2E-15 T 18-10-2018 RU84_01040 3ed81add7198ffdc366b7640d381438c 140 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 116 3.4E-26 T 18-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RU84_03355 859f014506290920a0a834d482ec66a2 571 SUPERFAMILY SSF55681 10 481 2.11E-105 T 18-10-2018 RU84_03355 859f014506290920a0a834d482ec66a2 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 462 1.0E-48 T 18-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03355 859f014506290920a0a834d482ec66a2 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 41.6 T 18-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RU84_03355 859f014506290920a0a834d482ec66a2 571 SUPERFAMILY SSF55826 218 393 1.31E-23 T 18-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RU84_03355 859f014506290920a0a834d482ec66a2 571 Gene3D G3DSA:3.40.50.800 4 557 3.0E-238 T 18-10-2018 IPR036621 Anticodon-binding domain superfamily RU84_03355 859f014506290920a0a834d482ec66a2 571 Gene3D G3DSA:3.90.960.10 240 392 3.0E-238 T 18-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RU84_03355 859f014506290920a0a834d482ec66a2 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 569 4.9E-255 T 18-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RU84_03355 859f014506290920a0a834d482ec66a2 571 SUPERFAMILY SSF52954 466 570 1.27E-29 T 18-10-2018 RU84_03355 859f014506290920a0a834d482ec66a2 571 PIRSF PIRSF001535 1 571 1.1E-264 T 18-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 RU84_03355 859f014506290920a0a834d482ec66a2 571 Pfam PF03129 Anticodon binding domain 479 569 6.1E-19 T 18-10-2018 IPR004154 Anticodon-binding RU84_03355 859f014506290920a0a834d482ec66a2 571 Gene3D G3DSA:3.30.930.10 11 468 3.0E-238 T 18-10-2018 RU84_03355 859f014506290920a0a834d482ec66a2 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.7E-18 T 18-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RU84_03355 859f014506290920a0a834d482ec66a2 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.7E-18 T 18-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RU84_03355 859f014506290920a0a834d482ec66a2 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.7E-18 T 18-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RU84_03355 859f014506290920a0a834d482ec66a2 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.7E-18 T 18-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 RU84_03355 859f014506290920a0a834d482ec66a2 571 Pfam PF04073 Aminoacyl-tRNA editing domain 256 379 2.7E-21 T 18-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RU84_03605 6f05f80705c09eb6c6d9b37505315751 205 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 4 160 4.4E-14 T 18-10-2018 RU84_03605 6f05f80705c09eb6c6d9b37505315751 205 Gene3D G3DSA:3.90.1470.10 13 128 1.3E-78 T 18-10-2018 RU84_03605 6f05f80705c09eb6c6d9b37505315751 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 201 3.4E-96 T 18-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 RU84_03605 6f05f80705c09eb6c6d9b37505315751 205 Gene3D G3DSA:3.40.50.1000 3 191 1.3E-78 T 18-10-2018 IPR023214 HAD superfamily RU84_03605 6f05f80705c09eb6c6d9b37505315751 205 Pfam PF12710 haloacid dehalogenase-like hydrolase 7 160 1.7E-10 T 18-10-2018 RU84_03605 6f05f80705c09eb6c6d9b37505315751 205 SUPERFAMILY SSF56784 1 196 1.71E-44 T 18-10-2018 IPR036412 HAD-like superfamily RU84_07915 a205731a0fb36f9abd7997810a6d9e87 217 Gene3D G3DSA:3.40.1080.10 4 215 3.7E-86 T 18-10-2018 RU84_07915 a205731a0fb36f9abd7997810a6d9e87 217 SUPERFAMILY SSF100950 8 212 1.65E-64 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_07915 a205731a0fb36f9abd7997810a6d9e87 217 Pfam PF01144 Coenzyme A transferase 9 204 3.1E-38 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_07915 a205731a0fb36f9abd7997810a6d9e87 217 SMART SM00882 9 206 1.8E-64 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_07915 a205731a0fb36f9abd7997810a6d9e87 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 212 2.8E-89 T 18-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 RU84_07915 a205731a0fb36f9abd7997810a6d9e87 217 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 47 55 - T 18-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 RU84_11370 6f7308cfd60d6d16249b0767c86717fd 72 Pfam PF07866 Protein of unknown function (DUF1653) 6 67 6.5E-29 T 18-10-2018 IPR023387 DUF1653-like domain RU84_11370 6f7308cfd60d6d16249b0767c86717fd 72 Gene3D G3DSA:2.30.30.320 1 72 4.7E-29 T 18-10-2018 IPR037135 DUF1653-like domain superfamily RU84_13075 68da261b0a214542f1384ff3475e5943 332 SUPERFAMILY SSF52540 10 180 1.19E-24 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13075 68da261b0a214542f1384ff3475e5943 332 Gene3D G3DSA:3.40.50.300 6 204 1.0E-47 T 18-10-2018 RU84_13075 68da261b0a214542f1384ff3475e5943 332 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 176 2.6E-41 T 18-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 Pfam PF07729 FCD domain 106 220 1.5E-6 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 SMART SM00345 20 81 2.9E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 Gene3D G3DSA:1.10.10.10 5 81 2.8E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 SMART SM00895 105 226 0.0064 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 SUPERFAMILY SSF46785 11 85 2.14E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 75 2.5E-16 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 53 9.5E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 53 69 9.5E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 SUPERFAMILY SSF48008 103 233 1.41E-6 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_11815 3b82fa95846b0fb43bdf9ed56bb65878 239 Gene3D G3DSA:1.20.120.530 98 231 1.3E-6 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 Gene3D G3DSA:1.20.120.530 88 226 2.3E-18 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.4E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.4E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 SMART SM00345 14 73 1.2E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 SUPERFAMILY SSF46785 1 77 3.76E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.3E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 Pfam PF07729 FCD domain 94 214 2.1E-15 T 18-10-2018 IPR011711 GntR, C-terminal RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 SUPERFAMILY SSF48008 89 220 6.02E-19 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 SMART SM00895 93 216 9.4E-11 T 18-10-2018 IPR011711 GntR, C-terminal RU84_06205 80ea2acb806f7db81753cde931a65f9e 232 Gene3D G3DSA:1.10.10.10 3 80 1.2E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 1.5E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 Gene3D G3DSA:1.10.10.10 10 90 2.7E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 SMART SM00345 25 84 7.9E-12 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 Pfam PF00155 Aminotransferase class I and II 163 458 3.4E-26 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 Gene3D G3DSA:3.40.640.10 119 483 4.0E-112 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 SUPERFAMILY SSF53383 128 492 4.08E-86 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 5.4E-7 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 5.4E-7 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_01000 58fcde719867a16c76d0c6de9e45a76e 499 SUPERFAMILY SSF46785 17 86 2.27E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_16040 7f50ceedb2ba943e45d93b856a4fca6f 730 SUPERFAMILY SSF101898 430 675 1.12E-5 T 18-10-2018 RU84_16040 7f50ceedb2ba943e45d93b856a4fca6f 730 Pfam PF05787 Bacterial protein of unknown function (DUF839) 83 686 8.7E-140 T 18-10-2018 IPR008557 Protein of unknown function DUF839 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Pfam PF00391 PEP-utilising enzyme, mobile domain 331 403 7.0E-17 T 18-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 SUPERFAMILY SSF47831 209 320 1.29E-26 T 18-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Gene3D G3DSA:3.50.30.10 184 411 6.1E-59 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 SUPERFAMILY SSF52009 304 423 7.06E-27 T 18-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 SUPERFAMILY SSF55781 4 162 1.2E-33 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 SMART SM00065 21 168 7.9E-23 T 18-10-2018 IPR003018 GAF domain GO:0005515 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Pfam PF13185 GAF domain 21 158 1.3E-14 T 18-10-2018 IPR003018 GAF domain GO:0005515 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Gene3D G3DSA:3.30.450.40 2 168 5.3E-49 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_16305 4d148fb324295bed34708f1200b2fde5 764 SUPERFAMILY SSF51621 432 726 1.39E-98 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 9.0E-23 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 9.0E-23 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 9.0E-23 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 9.0E-23 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Gene3D G3DSA:1.10.274.10 201 325 6.1E-59 T 18-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 625 643 - T 18-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 185 735 1.3E-127 T 18-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Gene3D G3DSA:3.20.20.60 412 752 1.2E-105 T 18-10-2018 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Pfam PF05524 PEP-utilising enzyme, N-terminal 183 305 8.7E-22 T 18-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RU84_16305 4d148fb324295bed34708f1200b2fde5 764 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 431 718 3.1E-96 T 18-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RU84_10835 957ef076fdb658abc11d47fa2475450c 144 Gene3D G3DSA:3.30.10.10 77 143 5.5E-18 T 18-10-2018 RU84_10835 957ef076fdb658abc11d47fa2475450c 144 Pfam PF11720 Peptidase inhibitor I78 family 81 144 1.7E-8 T 18-10-2018 IPR021719 Proteinase inhibitor I78 RU84_10835 957ef076fdb658abc11d47fa2475450c 144 Pfam PF03891 Domain of unknown function (DUF333) 33 76 2.6E-22 T 18-10-2018 IPR005590 Protein of unknown function DUF333 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 5.2E-227 T 18-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.463 T 18-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 SUPERFAMILY SSF50447 207 303 7.07E-30 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Gene3D G3DSA:3.40.50.300 1 205 1.2E-68 T 18-10-2018 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.6E-57 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Gene3D G3DSA:2.40.30.10 208 336 1.5E-53 T 18-10-2018 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Gene3D G3DSA:2.40.30.10 340 394 2.6E-28 T 18-10-2018 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 18-10-2018 IPR031157 Tr-type G domain, conserved site RU84_13870 47973d317cbd51d274ad76bda07135ad 396 SUPERFAMILY SSF50465 300 394 1.03E-36 T 18-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RU84_13870 47973d317cbd51d274ad76bda07135ad 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 5.3E-15 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 3.5E-34 T 18-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RU84_13870 47973d317cbd51d274ad76bda07135ad 396 SUPERFAMILY SSF52540 6 221 5.16E-60 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13870 47973d317cbd51d274ad76bda07135ad 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 6.2E-18 T 18-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 5.2E-227 T 18-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.463 T 18-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 SUPERFAMILY SSF50447 207 303 7.07E-30 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Gene3D G3DSA:3.40.50.300 1 205 1.2E-68 T 18-10-2018 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.6E-57 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Gene3D G3DSA:2.40.30.10 208 336 1.5E-53 T 18-10-2018 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Gene3D G3DSA:2.40.30.10 340 394 2.6E-28 T 18-10-2018 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.4E-24 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 18-10-2018 IPR031157 Tr-type G domain, conserved site RU84_17000 47973d317cbd51d274ad76bda07135ad 396 SUPERFAMILY SSF50465 300 394 1.03E-36 T 18-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RU84_17000 47973d317cbd51d274ad76bda07135ad 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 5.3E-15 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 3.5E-34 T 18-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal RU84_17000 47973d317cbd51d274ad76bda07135ad 396 SUPERFAMILY SSF52540 6 221 5.16E-60 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17000 47973d317cbd51d274ad76bda07135ad 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 6.2E-18 T 18-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RU84_04555 3f9e801682e133693abef1bf628dfa9c 467 TIGRFAM TIGR02794 tolA_full: protein TolA 250 465 5.7E-26 T 18-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 RU84_04555 3f9e801682e133693abef1bf628dfa9c 467 TIGRFAM TIGR02794 tolA_full: protein TolA 14 262 5.1E-23 T 18-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 RU84_04555 3f9e801682e133693abef1bf628dfa9c 467 Gene3D G3DSA:3.30.1150.10 353 467 3.5E-21 T 18-10-2018 RU84_04555 3f9e801682e133693abef1bf628dfa9c 467 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 399 455 7.0E-10 T 18-10-2018 IPR006260 TonB/TolA, C-terminal RU84_04555 3f9e801682e133693abef1bf628dfa9c 467 SUPERFAMILY SSF74653 386 466 3.92E-16 T 18-10-2018 RU84_04555 3f9e801682e133693abef1bf628dfa9c 467 Pfam PF13103 TonB C terminal 388 450 5.5E-12 T 18-10-2018 RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 205 6.8E-5 T 18-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 62 2.5E-14 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 Gene3D G3DSA:1.10.10.60 7 63 2.8E-19 T 18-10-2018 RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 SUPERFAMILY SSF46689 9 85 2.49E-17 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 SUPERFAMILY SSF48498 102 202 4.85E-5 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 Gene3D G3DSA:1.10.357.10 68 207 2.5E-20 T 18-10-2018 RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 6.0E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00165 832d5a68e65dc742f4304b48e473ac8c 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 6.0E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00790 479cb73af4744d323342fac50cd6fd8b 718 SUPERFAMILY SSF56935 31 718 1.96E-124 T 18-10-2018 RU84_00790 479cb73af4744d323342fac50cd6fd8b 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 716 7.6E-98 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_00790 479cb73af4744d323342fac50cd6fd8b 718 Pfam PF00593 TonB dependent receptor 243 717 4.6E-53 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_00790 479cb73af4744d323342fac50cd6fd8b 718 Gene3D G3DSA:2.40.170.20 180 718 7.6E-122 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_00790 479cb73af4744d323342fac50cd6fd8b 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 168 1.2E-17 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_00790 479cb73af4744d323342fac50cd6fd8b 718 Gene3D G3DSA:2.170.130.10 53 179 4.7E-32 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 399 7.7E-108 T 18-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 SUPERFAMILY SSF51905 4 392 1.08E-53 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 Gene3D G3DSA:3.30.9.50 84 278 5.8E-93 T 18-10-2018 RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 Pfam PF01494 FAD binding domain 4 357 6.4E-34 T 18-10-2018 IPR002938 FAD-binding domain GO:0071949 RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 Gene3D G3DSA:3.50.50.60 5 347 5.8E-93 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 304 9.6E-19 T 18-10-2018 RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 320 9.6E-19 T 18-10-2018 RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 9.6E-19 T 18-10-2018 RU84_12210 f34c2c24674d6aaf0832b4f5a21bf1ac 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 9.6E-19 T 18-10-2018 RU84_05150 bba746253088b8d686f25259da8bfbab 462 SUPERFAMILY SSF48557 4 447 5.81E-104 T 18-10-2018 IPR008948 L-Aspartase-like GO:0003824 RU84_05150 bba746253088b8d686f25259da8bfbab 462 ProSitePatterns PS00163 Fumarate lyases signature. 291 300 - T 18-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RU84_05150 bba746253088b8d686f25259da8bfbab 462 Gene3D G3DSA:1.10.275.10 1 115 3.5E-47 T 18-10-2018 IPR024083 Fumarase/histidase, N-terminal RU84_05150 bba746253088b8d686f25259da8bfbab 462 Gene3D G3DSA:1.10.40.30 379 445 2.7E-149 T 18-10-2018 RU84_05150 bba746253088b8d686f25259da8bfbab 462 PRINTS PR00149 Fumarate lyase superfamily signature 160 178 1.8E-17 T 18-10-2018 IPR000362 Fumarate lyase family RU84_05150 bba746253088b8d686f25259da8bfbab 462 PRINTS PR00149 Fumarate lyase superfamily signature 115 133 1.8E-17 T 18-10-2018 IPR000362 Fumarate lyase family RU84_05150 bba746253088b8d686f25259da8bfbab 462 PRINTS PR00149 Fumarate lyase superfamily signature 248 275 1.8E-17 T 18-10-2018 IPR000362 Fumarate lyase family RU84_05150 bba746253088b8d686f25259da8bfbab 462 PRINTS PR00149 Fumarate lyase superfamily signature 291 307 1.8E-17 T 18-10-2018 IPR000362 Fumarate lyase family RU84_05150 bba746253088b8d686f25259da8bfbab 462 Pfam PF08328 Adenylosuccinate lyase C-terminal 328 445 4.1E-46 T 18-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 RU84_05150 bba746253088b8d686f25259da8bfbab 462 Gene3D G3DSA:1.20.200.10 116 446 2.7E-149 T 18-10-2018 RU84_05150 bba746253088b8d686f25259da8bfbab 462 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 10 454 2.1E-130 T 18-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_05150 bba746253088b8d686f25259da8bfbab 462 Pfam PF00206 Lyase 12 309 8.6E-65 T 18-10-2018 IPR022761 Fumarate lyase, N-terminal RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 Gene3D G3DSA:3.40.190.290 91 292 2.0E-44 T 18-10-2018 RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 Pfam PF03466 LysR substrate binding domain 89 290 8.7E-39 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 Gene3D G3DSA:1.10.10.10 1 90 1.8E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 SUPERFAMILY SSF46785 1 83 5.45E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 SUPERFAMILY SSF53850 90 291 1.52E-37 T 18-10-2018 RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.7E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.6E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.6E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08620 4b88a9aa0fad0cdc52f658221c7bf6df 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.6E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16855 898b2e31950316b93139f94391ca82b3 599 Pfam PF14520 Helix-hairpin-helix domain 547 595 9.4E-6 T 18-10-2018 RU84_16855 898b2e31950316b93139f94391ca82b3 599 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 389 531 6.6E-49 T 18-10-2018 IPR001162 UvrC family homology region RU84_16855 898b2e31950316b93139f94391ca82b3 599 Pfam PF02151 UvrB/uvrC motif 208 241 2.1E-8 T 18-10-2018 IPR001943 UVR domain GO:0005515 RU84_16855 898b2e31950316b93139f94391ca82b3 599 SUPERFAMILY SSF46600 193 246 9.68E-13 T 18-10-2018 IPR036876 UVR domain superfamily RU84_16855 898b2e31950316b93139f94391ca82b3 599 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 578 1.2E-179 T 18-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RU84_16855 898b2e31950316b93139f94391ca82b3 599 SUPERFAMILY SSF82771 19 102 3.79E-23 T 18-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RU84_16855 898b2e31950316b93139f94391ca82b3 599 Hamap MF_00203 UvrABC system protein C [uvrC]. 6 596 26.829 T 18-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 RU84_16855 898b2e31950316b93139f94391ca82b3 599 Gene3D G3DSA:3.30.420.340 375 541 2.0E-52 T 18-10-2018 IPR038476 UvrC homology region 2 superfamily RU84_16855 898b2e31950316b93139f94391ca82b3 599 Gene3D G3DSA:3.40.1440.10 6 104 5.5E-33 T 18-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 RU84_16855 898b2e31950316b93139f94391ca82b3 599 SMART SM00465 19 100 2.2E-23 T 18-10-2018 IPR000305 GIY-YIG endonuclease RU84_16855 898b2e31950316b93139f94391ca82b3 599 Gene3D G3DSA:1.10.150.20 544 598 5.0E-19 T 18-10-2018 RU84_16855 898b2e31950316b93139f94391ca82b3 599 SMART SM00278 545 564 86.0 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_16855 898b2e31950316b93139f94391ca82b3 599 SMART SM00278 577 596 9.5 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_16855 898b2e31950316b93139f94391ca82b3 599 SUPERFAMILY SSF47781 510 598 6.35E-23 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_16855 898b2e31950316b93139f94391ca82b3 599 Pfam PF01541 GIY-YIG catalytic domain 21 95 9.2E-9 T 18-10-2018 IPR000305 GIY-YIG endonuclease RU84_04625 ede0a2130f91df7ba96507dd704d042e 189 Pfam PF00188 Cysteine-rich secretory protein family 59 186 5.8E-16 T 18-10-2018 IPR014044 CAP domain RU84_04625 ede0a2130f91df7ba96507dd704d042e 189 SUPERFAMILY SSF55797 51 187 3.01E-18 T 18-10-2018 IPR035940 CAP superfamily RU84_04625 ede0a2130f91df7ba96507dd704d042e 189 Gene3D G3DSA:3.40.33.10 15 187 9.8E-40 T 18-10-2018 IPR035940 CAP superfamily RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 4.2E-18 T 18-10-2018 RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 SUPERFAMILY SSF54909 66 151 6.97E-18 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 Gene3D G3DSA:1.10.10.10 1 55 2.9E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 3.5E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 3.5E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 3.5E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 SMART SM00344 4 113 3.1E-43 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 Gene3D G3DSA:3.30.70.920 56 149 1.5E-20 T 18-10-2018 RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 2.7E-19 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 SUPERFAMILY SSF46785 4 61 7.32E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17835 cf66d9fd96c9f59a4d4e6c8e704c23a1 155 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 18-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RU84_16770 9a5465efb9ab16a80c303341af86187f 286 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 22 128 2.2E-33 T 18-10-2018 IPR010627 Peptidase A24A, N-terminal RU84_16770 9a5465efb9ab16a80c303341af86187f 286 Pfam PF01478 Type IV leader peptidase family 138 247 6.8E-22 T 18-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 RU84_16770 9a5465efb9ab16a80c303341af86187f 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 8.6E-24 T 18-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RU84_16770 9a5465efb9ab16a80c303341af86187f 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 8.6E-24 T 18-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RU84_16770 9a5465efb9ab16a80c303341af86187f 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 8.6E-24 T 18-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RU84_16770 9a5465efb9ab16a80c303341af86187f 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 8.6E-24 T 18-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial RU84_17180 920f479c794171c9c344b09d57320c44 306 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 17 306 55.814 T 18-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RU84_17180 920f479c794171c9c344b09d57320c44 306 Gene3D G3DSA:1.10.150.130 18 109 2.4E-16 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_17180 920f479c794171c9c344b09d57320c44 306 SUPERFAMILY SSF56349 21 297 1.44E-59 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_17180 920f479c794171c9c344b09d57320c44 306 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 24 305 3.6E-110 T 18-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 RU84_17180 920f479c794171c9c344b09d57320c44 306 Gene3D G3DSA:1.10.443.10 120 300 1.0E-69 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_17180 920f479c794171c9c344b09d57320c44 306 Pfam PF00589 Phage integrase family 123 291 1.9E-52 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_17180 920f479c794171c9c344b09d57320c44 306 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 21 100 2.7E-14 T 18-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RU84_17180 920f479c794171c9c344b09d57320c44 306 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 19 306 55.892 T 18-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 SUPERFAMILY SSF53901 3 276 1.55E-78 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 4.6E-140 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 Gene3D G3DSA:3.40.47.10 141 398 2.7E-161 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 Pfam PF02803 Thiolase, C-terminal domain 276 399 1.2E-46 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 SUPERFAMILY SSF53901 277 400 1.36E-46 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 400 4.9E-207 T 18-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 Gene3D G3DSA:3.40.47.10 6 282 2.7E-161 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 Pfam PF00108 Thiolase, N-terminal domain 4 268 6.9E-78 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 PIRSF PIRSF000429 1 402 7.9E-135 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_10725 6f2833e0f9529e257e141efd3a03a6bb 402 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 18-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 227 2.5E-24 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 SUPERFAMILY SSF52172 5 130 5.27E-40 T 18-10-2018 IPR011006 CheY-like superfamily RU84_00525 425954f2d33ed14be4dd2527293011a0 236 Gene3D G3DSA:1.10.10.10 132 231 9.0E-34 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00525 425954f2d33ed14be4dd2527293011a0 236 SMART SM00862 152 227 6.3E-25 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 SMART SM00448 4 118 3.7E-41 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 Pfam PF00072 Response regulator receiver domain 6 119 4.4E-27 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 Gene3D G3DSA:3.40.50.2300 2 131 2.5E-36 T 18-10-2018 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 SUPERFAMILY SSF46894 130 228 5.1E-29 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_00525 425954f2d33ed14be4dd2527293011a0 236 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 4 228 2.5E-101 T 18-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Gene3D G3DSA:3.30.830.10 530 787 1.8E-110 T 18-10-2018 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 SUPERFAMILY SSF63411 261 523 8.71E-55 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 SUPERFAMILY SSF63411 790 975 5.17E-40 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 SUPERFAMILY SSF63411 522 772 5.7E-52 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Pfam PF08367 Peptidase M16C associated 466 715 7.1E-59 T 18-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Pfam PF05193 Peptidase M16 inactive domain 208 391 3.3E-9 T 18-10-2018 IPR007863 Peptidase M16, C-terminal RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 SMART SM01264 466 715 1.5E-83 T 18-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Gene3D G3DSA:3.30.830.10 499 949 1.8E-110 T 18-10-2018 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Gene3D G3DSA:3.30.830.10 260 487 7.8E-55 T 18-10-2018 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 SUPERFAMILY SSF63411 23 246 9.0E-43 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Pfam PF00675 Insulinase (Peptidase family M16) 63 154 8.4E-8 T 18-10-2018 IPR011765 Peptidase M16, N-terminal RU84_07770 e34c0a977a0af7fd9e51d5eaccd0a2a8 979 Gene3D G3DSA:3.30.830.10 3 253 1.3E-82 T 18-10-2018 RU84_02290 636fad8f0ffc8e68f3a48fc641d1cc0c 362 Pfam PF02562 PhoH-like protein 120 323 1.5E-95 T 18-10-2018 IPR003714 PhoH-like protein GO:0005524 RU84_02290 636fad8f0ffc8e68f3a48fc641d1cc0c 362 Gene3D G3DSA:3.40.50.300 117 323 2.0E-75 T 18-10-2018 RU84_02290 636fad8f0ffc8e68f3a48fc641d1cc0c 362 SUPERFAMILY SSF52540 119 295 6.89E-41 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_02290 636fad8f0ffc8e68f3a48fc641d1cc0c 362 SUPERFAMILY SSF54791 13 71 3.36E-5 T 18-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 RU84_09635 f961fc76e5a8c7058a9e492ef60e0500 197 SUPERFAMILY SSF47413 2 71 1.24E-17 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_09635 f961fc76e5a8c7058a9e492ef60e0500 197 Pfam PF01381 Helix-turn-helix 12 64 3.9E-14 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_09635 f961fc76e5a8c7058a9e492ef60e0500 197 Gene3D G3DSA:2.60.120.10 97 189 7.8E-10 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_09635 f961fc76e5a8c7058a9e492ef60e0500 197 SMART SM00530 11 66 1.1E-14 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_09635 f961fc76e5a8c7058a9e492ef60e0500 197 Gene3D G3DSA:1.10.260.40 2 78 1.7E-19 T 18-10-2018 RU84_09635 f961fc76e5a8c7058a9e492ef60e0500 197 SUPERFAMILY SSF51182 59 187 9.9E-20 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_15265 27315bf848cdc953580952c95bfaa059 422 SMART SM00382 170 355 3.8E-9 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_15265 27315bf848cdc953580952c95bfaa059 422 SMART SM00357 52 118 5.8E-19 T 18-10-2018 IPR011129 Cold shock domain GO:0003676 RU84_15265 27315bf848cdc953580952c95bfaa059 422 SMART SM00959 5 47 8.6E-17 T 18-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RU84_15265 27315bf848cdc953580952c95bfaa059 422 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 4.9E-211 T 18-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RU84_15265 27315bf848cdc953580952c95bfaa059 422 SUPERFAMILY SSF50249 48 125 1.33E-28 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_15265 27315bf848cdc953580952c95bfaa059 422 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 5.1E-32 T 18-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 RU84_15265 27315bf848cdc953580952c95bfaa059 422 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 242.778 T 18-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 RU84_15265 27315bf848cdc953580952c95bfaa059 422 SUPERFAMILY SSF52540 90 370 4.9E-65 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15265 27315bf848cdc953580952c95bfaa059 422 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-15 T 18-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 RU84_15265 27315bf848cdc953580952c95bfaa059 422 Gene3D G3DSA:3.40.50.300 130 417 9.7E-129 T 18-10-2018 RU84_15265 27315bf848cdc953580952c95bfaa059 422 Gene3D G3DSA:1.10.720.10 1 46 4.1E-20 T 18-10-2018 RU84_15265 27315bf848cdc953580952c95bfaa059 422 SUPERFAMILY SSF68912 1 46 2.2E-11 T 18-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily RU84_15265 27315bf848cdc953580952c95bfaa059 422 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 3.2E-23 T 18-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_15265 27315bf848cdc953580952c95bfaa059 422 Gene3D G3DSA:2.40.50.140 47 123 4.6E-34 T 18-10-2018 RU84_02285 ac21544145171a4d8d10a47365af727b 158 Gene3D G3DSA:3.40.390.30 1 158 5.3E-48 T 18-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 RU84_02285 ac21544145171a4d8d10a47365af727b 158 Pfam PF02130 Uncharacterized protein family UPF0054 22 150 5.1E-37 T 18-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RU84_02285 ac21544145171a4d8d10a47365af727b 158 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 154 23.452 T 18-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RU84_02285 ac21544145171a4d8d10a47365af727b 158 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 41 150 8.7E-35 T 18-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 RU84_02285 ac21544145171a4d8d10a47365af727b 158 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 119 129 - T 18-10-2018 IPR020549 Endoribonuclease YbeY, conserved site RU84_02285 ac21544145171a4d8d10a47365af727b 158 SUPERFAMILY SSF55486 17 156 1.03E-44 T 18-10-2018 RU84_17325 32135dd396a027f1bc1cc4616a789ab9 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 18-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RU84_17325 32135dd396a027f1bc1cc4616a789ab9 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 4.8E-52 T 18-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RU84_17325 32135dd396a027f1bc1cc4616a789ab9 175 Gene3D G3DSA:3.90.80.10 1 175 1.7E-71 T 18-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RU84_17325 32135dd396a027f1bc1cc4616a789ab9 175 SUPERFAMILY SSF50324 3 174 5.49E-67 T 18-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RU84_17325 32135dd396a027f1bc1cc4616a789ab9 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.615 T 18-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 RU84_07470 b3248140c915a09e928f2a3487863c35 398 SUPERFAMILY SSF69055 301 395 4.05E-31 T 18-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 Gene3D G3DSA:1.10.1740.10 312 398 1.0E-32 T 18-10-2018 RU84_07470 b3248140c915a09e928f2a3487863c35 398 SUPERFAMILY SSF51735 3 151 6.86E-43 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_07470 b3248140c915a09e928f2a3487863c35 398 PIRSF PIRSF006205 2 397 7.1E-150 T 18-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 133 6.2E-44 T 18-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 394 2.1E-149 T 18-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 SUPERFAMILY SSF55347 127 274 8.17E-60 T 18-10-2018 RU84_07470 b3248140c915a09e928f2a3487863c35 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 2.8E-41 T 18-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 392 45.72 T 18-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 239 2.9E-37 T 18-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 RU84_07470 b3248140c915a09e928f2a3487863c35 398 Gene3D G3DSA:3.40.50.720 1 151 1.2E-58 T 18-10-2018 RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 SUPERFAMILY SSF53383 3 398 2.72E-77 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 Pfam PF00266 Aminotransferase class-V 79 319 1.5E-15 T 18-10-2018 IPR000192 Aminotransferase class V domain RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 Gene3D G3DSA:3.40.640.10 41 303 2.4E-158 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 PIRSF PIRSF038800 1 407 6.9E-143 T 18-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 Gene3D G3DSA:3.90.1150.10 11 399 2.4E-158 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 TIGRFAM TIGR01814 kynureninase: kynureninase 10 399 2.8E-101 T 18-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 RU84_07560 30d9d829828667a2a8bf9f8bd4c5d2b0 416 Hamap MF_01970 Kynureninase [kynU]. 1 399 33.534 T 18-10-2018 IPR010111 Kynureninase GO:0005737|GO:0006569|GO:0009435|GO:0030170|GO:0030429 KEGG: 00380+3.7.1.3|MetaCyc: PWY-5651|MetaCyc: PWY-6309|Reactome: R-HSA-71240 RU84_00015 bf7ddb6af8457c19c3e116a1c8c42154 360 Gene3D G3DSA:3.40.50.300 6 329 1.1E-75 T 18-10-2018 RU84_00015 bf7ddb6af8457c19c3e116a1c8c42154 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 2.1E-83 T 18-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RU84_00015 bf7ddb6af8457c19c3e116a1c8c42154 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 78.807 T 18-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 RU84_00015 bf7ddb6af8457c19c3e116a1c8c42154 360 Gene3D G3DSA:1.20.1050.90 116 294 1.1E-75 T 18-10-2018 RU84_00015 bf7ddb6af8457c19c3e116a1c8c42154 360 SUPERFAMILY SSF52540 1 334 2.1E-37 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00015 bf7ddb6af8457c19c3e116a1c8c42154 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 336 3.4E-24 T 18-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 4.5E-38 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 SUPERFAMILY SSF47203 228 379 5.8E-46 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 336 355 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 9.8E-34 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 Gene3D G3DSA:1.20.140.10 235 381 6.3E-43 T 18-10-2018 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 SUPERFAMILY SSF56645 4 241 2.23E-83 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 3.6E-24 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 PIRSF PIRSF016578 8 381 1.4E-16 T 18-10-2018 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 Gene3D G3DSA:1.10.540.10 2 120 6.3E-36 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 Gene3D G3DSA:2.40.110.10 121 234 9.6E-41 T 18-10-2018 RU84_05865 c8d85f15e60b30f46b75e892c138be42 381 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Gene3D G3DSA:3.90.740.10 215 258 2.1E-6 T 18-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Gene3D G3DSA:3.40.50.620 337 561 3.3E-74 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 TIGRFAM TIGR00422 valS: valine--tRNA ligase 11 939 0.0 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Gene3D G3DSA:3.40.50.620 11 214 3.2E-68 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 SUPERFAMILY SSF52374 10 647 8.7E-140 T 18-10-2018 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Pfam PF08264 Anticodon-binding domain of tRNA 680 828 2.1E-38 T 18-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Hamap MF_02004 Valine--tRNA ligase [valS]. 10 957 16.079 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 SUPERFAMILY SSF50677 197 369 2.88E-56 T 18-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Gene3D G3DSA:1.10.287.380 885 957 7.8E-22 T 18-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 22 637 4.2E-217 T 18-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 PRINTS PR00986 Valyl-tRNA synthetase signature 243 260 9.5E-38 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 PRINTS PR00986 Valyl-tRNA synthetase signature 475 496 9.5E-38 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 PRINTS PR00986 Valyl-tRNA synthetase signature 375 388 9.5E-38 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 9.5E-38 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 PRINTS PR00986 Valyl-tRNA synthetase signature 506 524 9.5E-38 T 18-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 892 956 2.0E-21 T 18-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 SUPERFAMILY SSF47323 648 907 1.46E-66 T 18-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 Gene3D G3DSA:1.10.730.10 587 825 1.1E-70 T 18-10-2018 RU84_03755 5d21c6a0cb2e0f585c3ebdcf49eb8cd6 959 SUPERFAMILY SSF46589 892 956 2.67E-16 T 18-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RU84_10890 c3cc45172722177a755184ebb80bfcb3 255 Gene3D G3DSA:3.20.20.370 1 254 1.6E-101 T 18-10-2018 RU84_10890 c3cc45172722177a755184ebb80bfcb3 255 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 245 44.786 T 18-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RU84_10890 c3cc45172722177a755184ebb80bfcb3 255 SUPERFAMILY SSF88713 1 251 3.34E-101 T 18-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RU84_10890 c3cc45172722177a755184ebb80bfcb3 255 Pfam PF03746 LamB/YcsF family 3 240 3.7E-100 T 18-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 SUPERFAMILY SSF54631 93 202 1.02E-26 T 18-10-2018 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 Pfam PF00571 CBS domain 157 203 8.7E-4 T 18-10-2018 IPR000644 CBS domain RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 Pfam PF00571 CBS domain 89 137 6.6E-11 T 18-10-2018 IPR000644 CBS domain RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 Gene3D G3DSA:3.20.20.70 2 487 2.3E-207 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 18-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 474 1.8E-159 T 18-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 487 82.775 T 18-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 SUPERFAMILY SSF51412 2 478 1.83E-125 T 18-10-2018 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 SMART SM00116 96 143 2.7E-9 T 18-10-2018 IPR000644 CBS domain RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 SMART SM00116 157 205 1.7E-5 T 18-10-2018 IPR000644 CBS domain RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 PIRSF PIRSF000130 1 488 3.3E-202 T 18-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 SMART SM01240 7 474 0.0 T 18-10-2018 RU84_00805 bb8c0f91fcec315bfd6c013d44019802 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 1.4E-186 T 18-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 SUPERFAMILY SSF56645 30 232 4.06E-40 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 Gene3D G3DSA:1.10.540.10 25 132 5.4E-24 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 PIRSF PIRSF016578 6 397 1.1E-36 T 18-10-2018 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 18 406 9.7E-181 T 18-10-2018 IPR023922 Sulphate-starvation-induced SfnB RU84_09800 f1c3483678efe553e31baea56fd0456e 407 Gene3D G3DSA:1.20.140.10 234 404 5.1E-47 T 18-10-2018 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 Gene3D G3DSA:2.40.110.10 133 233 1.4E-26 T 18-10-2018 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 250 384 1.1E-18 T 18-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RU84_09800 f1c3483678efe553e31baea56fd0456e 407 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 31 130 3.2E-10 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_09800 f1c3483678efe553e31baea56fd0456e 407 SUPERFAMILY SSF47203 245 402 3.06E-18 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 Gene3D G3DSA:3.90.190.20 303 443 2.3E-43 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 10 445 8.7E-121 T 18-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 SUPERFAMILY SSF51984 10 94 6.02E-18 T 18-10-2018 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 Gene3D G3DSA:3.40.50.720 8 93 3.1E-22 T 18-10-2018 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 SUPERFAMILY SSF53623 96 300 5.49E-53 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 SUPERFAMILY SSF53244 302 447 1.4E-42 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 447 33.652 T 18-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 Pfam PF08245 Mur ligase middle domain 110 282 2.7E-26 T 18-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 Gene3D G3DSA:3.40.1190.10 94 302 1.0E-63 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_17160 2286beb7b1a9835c4df40acfd20a79df 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 304 383 1.2E-7 T 18-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RU84_01970 0f219defe7f4c3230ebf8ee7a11180eb 315 Pfam PF10118 Predicted metal-dependent hydrolase 22 291 6.2E-66 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_01970 0f219defe7f4c3230ebf8ee7a11180eb 315 PIRSF PIRSF007580 8 311 2.0E-80 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_01445 abcf55e515e0d6a652564a7cbfa9c59a 246 Pfam PF04350 Pilus assembly protein, PilO 73 220 8.5E-50 T 18-10-2018 IPR007445 Pilus assembly protein, PilO RU84_01445 abcf55e515e0d6a652564a7cbfa9c59a 246 PIRSF PIRSF016482 9 237 1.5E-59 T 18-10-2018 IPR007445 Pilus assembly protein, PilO RU84_01445 abcf55e515e0d6a652564a7cbfa9c59a 246 Gene3D G3DSA:3.30.70.60 118 230 2.5E-33 T 18-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RU84_11280 7f91f45f5c4f1e55d10ebdc7a8464cfc 88 SUPERFAMILY SSF56029 3 88 2.49E-31 T 18-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 RU84_11280 7f91f45f5c4f1e55d10ebdc7a8464cfc 88 Pfam PF02406 MmoB/DmpM family 3 86 7.3E-30 T 18-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 RU84_11280 7f91f45f5c4f1e55d10ebdc7a8464cfc 88 ProDom PD004249 MONOOXYGENASE COMPONENT HYDROXYLASE MMOB/DMPM PHENOL SUBUNIT 3D-STRUCTURE HYDROCARBONS IRON PHENOLHYDROXYLASE 8 86 9.0E-40 T 18-10-2018 IPR003454 Monooxygenase component MmoB/DmpM GO:0004497|GO:0006725 RU84_11280 7f91f45f5c4f1e55d10ebdc7a8464cfc 88 Gene3D G3DSA:3.90.56.10 1 88 3.4E-35 T 18-10-2018 IPR036889 Monooxygenase component MmoB/DmpM superfamily GO:0004497|GO:0006725 RU84_01880 039a75220282386a595cf82327a780f1 276 Gene3D G3DSA:3.40.190.80 145 274 1.7E-32 T 18-10-2018 RU84_01880 039a75220282386a595cf82327a780f1 276 SUPERFAMILY SSF56655 1 272 3.14E-75 T 18-10-2018 RU84_01880 039a75220282386a595cf82327a780f1 276 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 85 98 - T 18-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RU84_01880 039a75220282386a595cf82327a780f1 276 Pfam PF00459 Inositol monophosphatase family 2 264 1.8E-65 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 221 235 - T 18-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.6E-49 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 218 242 1.6E-49 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 1.6E-49 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.6E-49 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 1.6E-49 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 187 208 1.6E-49 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_01880 039a75220282386a595cf82327a780f1 276 Gene3D G3DSA:3.30.540.10 1 144 4.4E-45 T 18-10-2018 RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 1.6E-68 T 18-10-2018 RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.1E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 2.1E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.1E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.1E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.1E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.1E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 SUPERFAMILY SSF51735 4 248 3.71E-82 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 7.4E-13 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 7.4E-13 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 7.4E-13 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 0.003 T 18-10-2018 RU84_12910 f659787fea88d18aa11707c7ac1b980d 249 Gene3D G3DSA:3.40.50.720 2 249 6.9E-79 T 18-10-2018 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 Gene3D G3DSA:1.10.3090.10 122 411 4.2E-46 T 18-10-2018 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 406 53.019 T 18-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 PIRSF PIRSF000813 1 407 4.2E-191 T 18-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 Gene3D G3DSA:3.30.460.10 1 121 1.1E-30 T 18-10-2018 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 400 40.838 T 18-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 SUPERFAMILY SSF81891 120 400 3.14E-55 T 18-10-2018 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 SUPERFAMILY SSF81301 1 119 5.23E-32 T 18-10-2018 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 Pfam PF01743 Poly A polymerase head domain 3 122 2.0E-20 T 18-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RU84_05550 806cea6015a92e91e4524c98eb63abfc 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 3.0E-17 T 18-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RU84_05375 5933021671a56adcd9a5011992b105a6 536 Gene3D G3DSA:1.20.1560.10 13 313 6.6E-21 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_05375 5933021671a56adcd9a5011992b105a6 536 SUPERFAMILY SSF90123 15 313 1.44E-27 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_05375 5933021671a56adcd9a5011992b105a6 536 Gene3D G3DSA:3.40.50.300 320 534 2.8E-51 T 18-10-2018 RU84_05375 5933021671a56adcd9a5011992b105a6 536 SMART SM00382 353 530 4.6E-20 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05375 5933021671a56adcd9a5011992b105a6 536 SUPERFAMILY SSF52540 322 528 5.33E-49 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05375 5933021671a56adcd9a5011992b105a6 536 ProSitePatterns PS00211 ABC transporters family signature. 454 468 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05375 5933021671a56adcd9a5011992b105a6 536 Pfam PF00005 ABC transporter 344 482 1.2E-27 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_05375 5933021671a56adcd9a5011992b105a6 536 Pfam PF00664 ABC transporter transmembrane region 18 271 2.3E-9 T 18-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RU84_12850 74820baf2d9a22f1680531d728b77546 212 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 18 211 4.3E-87 T 18-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 RU84_12850 74820baf2d9a22f1680531d728b77546 212 Pfam PF01106 NifU-like domain 127 198 1.2E-20 T 18-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RU84_12850 74820baf2d9a22f1680531d728b77546 212 SUPERFAMILY SSF89360 14 110 7.26E-20 T 18-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RU84_12850 74820baf2d9a22f1680531d728b77546 212 Pfam PF01521 Iron-sulphur cluster biosynthesis 17 112 5.5E-8 T 18-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RU84_12850 74820baf2d9a22f1680531d728b77546 212 SUPERFAMILY SSF117916 111 204 1.53E-21 T 18-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RU84_12850 74820baf2d9a22f1680531d728b77546 212 Gene3D G3DSA:3.30.300.130 121 210 1.6E-20 T 18-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RU84_12850 74820baf2d9a22f1680531d728b77546 212 Gene3D G3DSA:2.60.300.12 16 113 5.0E-9 T 18-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RU84_12850 74820baf2d9a22f1680531d728b77546 212 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 134 198 3.0E-29 T 18-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 RU84_12850 74820baf2d9a22f1680531d728b77546 212 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 16 211 40.737 T 18-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 RU84_11685 30791e01e725add37175a060d0015f52 625 Pfam PF00501 AMP-binding enzyme 53 473 1.6E-52 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_11685 30791e01e725add37175a060d0015f52 625 Gene3D G3DSA:3.40.50.12780 30 458 1.5E-58 T 18-10-2018 RU84_11685 30791e01e725add37175a060d0015f52 625 SUPERFAMILY SSF56801 16 507 6.8E-66 T 18-10-2018 RU84_07325 fd87139f037da76605e37be1903d1638 84 Gene3D G3DSA:3.10.20.30 1 84 3.0E-7 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_07325 fd87139f037da76605e37be1903d1638 84 Pfam PF02597 ThiS family 22 84 3.3E-6 T 18-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RU84_07325 fd87139f037da76605e37be1903d1638 84 SUPERFAMILY SSF54285 7 84 1.59E-8 T 18-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RU84_07240 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_07240 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF00665 Integrase core domain 175 280 1.9E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_07240 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Gene3D G3DSA:3.30.420.10 167 330 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_07240 8bb534c7d89da7c0ae1df3c97a7eecaa 336 SUPERFAMILY SSF53098 175 321 8.09E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_04505 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_04505 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF00665 Integrase core domain 175 280 1.9E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_04505 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Gene3D G3DSA:3.30.420.10 167 330 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_04505 8bb534c7d89da7c0ae1df3c97a7eecaa 336 SUPERFAMILY SSF53098 175 321 8.09E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_04230 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_04230 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF00665 Integrase core domain 175 280 1.9E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_04230 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Gene3D G3DSA:3.30.420.10 167 330 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_04230 8bb534c7d89da7c0ae1df3c97a7eecaa 336 SUPERFAMILY SSF53098 175 321 8.09E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_01095 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_01095 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF00665 Integrase core domain 175 280 1.9E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_01095 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Gene3D G3DSA:3.30.420.10 167 330 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_01095 8bb534c7d89da7c0ae1df3c97a7eecaa 336 SUPERFAMILY SSF53098 175 321 8.09E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_08315 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_08315 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF00665 Integrase core domain 175 280 1.9E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_08315 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Gene3D G3DSA:3.30.420.10 167 330 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_08315 8bb534c7d89da7c0ae1df3c97a7eecaa 336 SUPERFAMILY SSF53098 175 321 8.09E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_02435 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_02435 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Pfam PF00665 Integrase core domain 175 280 1.9E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_02435 8bb534c7d89da7c0ae1df3c97a7eecaa 336 Gene3D G3DSA:3.30.420.10 167 330 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_02435 8bb534c7d89da7c0ae1df3c97a7eecaa 336 SUPERFAMILY SSF53098 175 321 8.09E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_15775 7e6946a3e5605ea212956a8e70495622 446 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 329 1.7E-39 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_15775 7e6946a3e5605ea212956a8e70495622 446 SUPERFAMILY SSF111369 52 247 2.62E-22 T 18-10-2018 RU84_15775 7e6946a3e5605ea212956a8e70495622 446 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 250 2.9E-14 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_15775 7e6946a3e5605ea212956a8e70495622 446 Gene3D G3DSA:2.40.420.20 44 330 1.6E-77 T 18-10-2018 RU84_15775 7e6946a3e5605ea212956a8e70495622 446 Gene3D G3DSA:2.40.420.20 369 441 6.2E-7 T 18-10-2018 RU84_15775 7e6946a3e5605ea212956a8e70495622 446 Gene3D G3DSA:2.40.50.100 60 222 1.6E-77 T 18-10-2018 RU84_15775 7e6946a3e5605ea212956a8e70495622 446 Gene3D G3DSA:1.10.287.470 94 185 1.6E-77 T 18-10-2018 RU84_15775 7e6946a3e5605ea212956a8e70495622 446 Gene3D G3DSA:2.40.30.170 49 312 1.6E-77 T 18-10-2018 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 6 402 3.6E-219 T 18-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 14 398 8.3E-152 T 18-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 221 258 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 401 69.092 T 18-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 PIRSF PIRSF000521 27 159 1.6E-4 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 PIRSF PIRSF000521 160 401 2.8E-36 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 Gene3D G3DSA:3.90.1150.10 24 391 2.3E-149 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 SUPERFAMILY SSF53383 14 399 1.9E-124 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 Gene3D G3DSA:3.40.640.10 58 303 2.3E-149 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_11795 948d1ed9b2273a6ccaedd7915cfa57be 411 Pfam PF00202 Aminotransferase class-III 24 398 5.3E-121 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 18-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 PIRSF PIRSF006092 1 158 6.0E-55 T 18-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.8E-31 T 18-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 3.3E-59 T 18-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 157 1.1E-29 T 18-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 SUPERFAMILY SSF46557 3 78 2.22E-28 T 18-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.168 T 18-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 SUPERFAMILY SSF54534 82 157 7.06E-25 T 18-10-2018 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 18-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 Gene3D G3DSA:3.10.50.30 76 158 4.2E-32 T 18-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RU84_04030 99d638c9ea1a67c89ae795d1a8606673 158 Gene3D G3DSA:1.10.287.180 1 75 2.4E-31 T 18-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RU84_11750 fb31e087cd95084720fac80673638b7b 356 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 42 224 4.5E-30 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_11750 fb31e087cd95084720fac80673638b7b 356 Pfam PF12833 Helix-turn-helix domain 275 351 4.6E-19 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_11750 fb31e087cd95084720fac80673638b7b 356 Gene3D G3DSA:1.10.10.60 252 354 2.2E-22 T 18-10-2018 RU84_11750 fb31e087cd95084720fac80673638b7b 356 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 335 351 2.4E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_11750 fb31e087cd95084720fac80673638b7b 356 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 335 2.4E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_11750 fb31e087cd95084720fac80673638b7b 356 SUPERFAMILY SSF46689 305 353 1.25E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_11750 fb31e087cd95084720fac80673638b7b 356 SMART SM00342 269 351 6.2E-22 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_00195 863a76325f4fbd138a37d6028316c706 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 152 169 - T 18-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00195 863a76325f4fbd138a37d6028316c706 273 Gene3D G3DSA:3.30.360.10 129 236 9.6E-103 T 18-10-2018 RU84_00195 863a76325f4fbd138a37d6028316c706 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 267 35.308 T 18-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00195 863a76325f4fbd138a37d6028316c706 273 Gene3D G3DSA:3.40.50.720 7 266 9.6E-103 T 18-10-2018 RU84_00195 863a76325f4fbd138a37d6028316c706 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 1.1E-41 T 18-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00195 863a76325f4fbd138a37d6028316c706 273 PIRSF PIRSF000161 3 270 5.6E-87 T 18-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00195 863a76325f4fbd138a37d6028316c706 273 SUPERFAMILY SSF55347 129 238 5.45E-38 T 18-10-2018 RU84_00195 863a76325f4fbd138a37d6028316c706 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 127 1.3E-42 T 18-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00195 863a76325f4fbd138a37d6028316c706 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 267 3.9E-99 T 18-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00195 863a76325f4fbd138a37d6028316c706 273 SUPERFAMILY SSF51735 5 270 5.05E-50 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 SUPERFAMILY SSF55785 15 131 4.71E-10 T 18-10-2018 IPR035965 PAS domain superfamily RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 228 244 7.1E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 213 228 7.1E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 Gene3D G3DSA:1.10.10.60 146 249 1.8E-27 T 18-10-2018 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 SUPERFAMILY SSF46689 198 246 8.96E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 199 240 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 SMART SM00342 162 244 4.0E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 Pfam PF08448 PAS fold 30 135 2.4E-14 T 18-10-2018 IPR013656 PAS fold-4 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 Pfam PF12833 Helix-turn-helix domain 169 245 8.7E-20 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 Gene3D G3DSA:3.30.450.20 12 136 2.7E-14 T 18-10-2018 RU84_10795 fca1ba109a583cdcb79386ae48fe30b4 250 SUPERFAMILY SSF46689 148 194 5.38E-5 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_02655 27ae2f826c0de8377c7ad928bdac5380 235 TIGRFAM TIGR00608 radc: DNA repair protein RadC 13 227 6.5E-63 T 18-10-2018 IPR001405 Uncharacterised protein family UPF0758 RU84_02655 27ae2f826c0de8377c7ad928bdac5380 235 Gene3D G3DSA:3.40.140.10 103 227 2.4E-37 T 18-10-2018 RU84_02655 27ae2f826c0de8377c7ad928bdac5380 235 SUPERFAMILY SSF47781 17 91 5.93E-11 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_02655 27ae2f826c0de8377c7ad928bdac5380 235 SUPERFAMILY SSF102712 155 197 8.11E-5 T 18-10-2018 RU84_02655 27ae2f826c0de8377c7ad928bdac5380 235 Gene3D G3DSA:1.10.150.20 46 88 1.2E-6 T 18-10-2018 RU84_02655 27ae2f826c0de8377c7ad928bdac5380 235 Pfam PF04002 RadC-like JAB domain 107 225 1.1E-36 T 18-10-2018 IPR025657 RadC-like JAB domain RU84_10810 013eb2c2204b75b23909051bc646460a 367 Pfam PF01266 FAD dependent oxidoreductase 4 344 1.7E-58 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_10810 013eb2c2204b75b23909051bc646460a 367 SUPERFAMILY SSF51905 3 364 1.94E-47 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10810 013eb2c2204b75b23909051bc646460a 367 SUPERFAMILY SSF54373 206 306 5.1E-13 T 18-10-2018 RU84_10810 013eb2c2204b75b23909051bc646460a 367 Gene3D G3DSA:3.30.9.10 81 305 1.7E-69 T 18-10-2018 RU84_10810 013eb2c2204b75b23909051bc646460a 367 Gene3D G3DSA:3.50.50.60 4 345 1.7E-69 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 TIGRFAM TIGR00835 agcS: amino acid carrier protein 21 461 2.6E-149 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 96 111 - T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 Pfam PF01235 Sodium:alanine symporter family 60 474 2.8E-150 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 PRINTS PR00175 Sodium/alanine symporter signature 370 392 2.6E-52 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 PRINTS PR00175 Sodium/alanine symporter signature 325 343 2.6E-52 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 PRINTS PR00175 Sodium/alanine symporter signature 430 450 2.6E-52 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 PRINTS PR00175 Sodium/alanine symporter signature 96 118 2.6E-52 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 PRINTS PR00175 Sodium/alanine symporter signature 230 249 2.6E-52 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_03505 7398c4ecaa55dcda48201b7a87d2d59a 491 PRINTS PR00175 Sodium/alanine symporter signature 202 220 2.6E-52 T 18-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.4E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.4E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 1.4E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.4E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.2E-5 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.2E-5 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.2E-5 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 SUPERFAMILY SSF51735 1 264 1.89E-57 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 191 0.0047 T 18-10-2018 RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 Gene3D G3DSA:3.40.50.720 1 276 1.7E-61 T 18-10-2018 RU84_08570 89dfe1a388a899b94749c5031d8ec4d9 286 Pfam PF00106 short chain dehydrogenase 8 195 5.2E-46 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14345 199f287b76e284edcc41d2170f461c8b 621 SMART SM00493 302 372 2.1E-15 T 18-10-2018 IPR006171 TOPRIM domain RU84_14345 199f287b76e284edcc41d2170f461c8b 621 SUPERFAMILY SSF56731 164 463 8.76E-94 T 18-10-2018 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Pfam PF10410 DnaB-helicase binding domain of primase 411 465 9.2E-6 T 18-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Pfam PF08275 DNA primase catalytic core, N-terminal domain 174 294 2.1E-37 T 18-10-2018 IPR013264 DNA primase, catalytic core, N-terminal RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Gene3D G3DSA:3.90.580.10 1 101 2.8E-37 T 18-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Gene3D G3DSA:3.40.1360.10 285 408 2.3E-37 T 18-10-2018 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Gene3D G3DSA:3.90.980.10 163 284 1.9E-37 T 18-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Hamap MF_00974 DNA primase [dnaG]. 2 613 26.454 T 18-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Pfam PF01807 CHC2 zinc finger 4 98 1.1E-38 T 18-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 SMART SM00400 34 88 3.3E-30 T 18-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 SUPERFAMILY SSF57783 1 97 5.78E-34 T 18-10-2018 RU84_14345 199f287b76e284edcc41d2170f461c8b 621 Pfam PF13662 Toprim domain 306 369 1.2E-15 T 18-10-2018 IPR006171 TOPRIM domain RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Gene3D G3DSA:3.90.480.10 53 387 1.4E-76 T 18-10-2018 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 SUPERFAMILY SSF55124 1 125 2.78E-28 T 18-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 5.0E-16 T 18-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 326 396 1.8E-16 T 18-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 4.3E-40 T 18-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 408 544 4.0E-11 T 18-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Gene3D G3DSA:3.30.413.10 119 315 1.4E-76 T 18-10-2018 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 SUPERFAMILY SSF56014 405 546 1.96E-39 T 18-10-2018 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 SUPERFAMILY SSF55124 253 419 2.13E-25 T 18-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 SUPERFAMILY SSF56014 120 279 1.23E-43 T 18-10-2018 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 Gene3D G3DSA:3.30.413.10 406 547 1.3E-32 T 18-10-2018 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 PRINTS PR00397 Sirohaem Fe-binding site signature 408 426 5.8E-5 T 18-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_03215 66c9aa2a31295bcf8ea9849636b70bc5 547 PRINTS PR00397 Sirohaem Fe-binding site signature 454 472 5.8E-5 T 18-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 194 364 9.5E-33 T 18-10-2018 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 SUPERFAMILY SSF55021 1 82 6.25E-9 T 18-10-2018 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 Pfam PF13740 ACT domain 3 79 1.5E-21 T 18-10-2018 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 Gene3D G3DSA:3.30.70.260 2 82 1.1E-8 T 18-10-2018 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 179 397 4.2E-81 T 18-10-2018 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 Gene3D G3DSA:3.40.50.1000 106 398 3.0E-85 T 18-10-2018 IPR023214 HAD superfamily RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 Pfam PF12710 haloacid dehalogenase-like hydrolase 195 362 2.1E-23 T 18-10-2018 RU84_00465 34b37e1acaa03dde383fbe82e670edfd 407 SUPERFAMILY SSF56784 190 397 4.14E-53 T 18-10-2018 IPR036412 HAD-like superfamily RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Gene3D G3DSA:3.40.50.2300 1 124 1.4E-39 T 18-10-2018 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 SUPERFAMILY SSF52540 141 385 6.83E-72 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 18-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Pfam PF02954 Bacterial regulatory protein, Fis family 439 477 3.9E-14 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 SMART SM00448 4 115 4.5E-35 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 SUPERFAMILY SSF46689 406 480 5.38E-18 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Gene3D G3DSA:1.10.8.60 315 386 3.6E-18 T 18-10-2018 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 SMART SM00382 162 305 1.7E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 18-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 SUPERFAMILY SSF52172 3 187 1.31E-43 T 18-10-2018 IPR011006 CheY-like superfamily RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 166 179 - T 18-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Pfam PF00072 Response regulator receiver domain 6 115 4.5E-30 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Gene3D G3DSA:3.40.50.300 127 313 1.5E-67 T 18-10-2018 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 477 5.8E-226 T 18-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 460 480 4.7E-10 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 443 460 4.7E-10 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Pfam PF00158 Sigma-54 interaction domain 142 309 1.7E-71 T 18-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RU84_07435 146f36ae5f08a9ee6fe51747bd8959c6 497 Gene3D G3DSA:1.10.10.60 387 480 2.1E-23 T 18-10-2018 RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 SUPERFAMILY SSF46785 97 172 1.28E-23 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 24 186 1.1E-33 T 18-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 Gene3D G3DSA:1.10.10.10 14 94 2.5E-14 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 Pfam PF04079 Segregation and condensation complex subunit ScpB 23 181 9.9E-49 T 18-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 SUPERFAMILY SSF46785 18 94 9.29E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 PIRSF PIRSF019345 5 198 1.8E-53 T 18-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 RU84_14480 364ed96ea91628ac06f2cf931555e3ce 198 Gene3D G3DSA:1.10.10.10 95 190 2.3E-30 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 Gene3D G3DSA:1.10.3860.10 1 418 2.5E-117 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 SUPERFAMILY SSF118215 9 404 1.44E-112 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 Pfam PF00375 Sodium:dicarboxylate symporter family 9 403 1.0E-102 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 4.9E-24 T 18-10-2018 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 4.9E-24 T 18-10-2018 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 4.9E-24 T 18-10-2018 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 4.9E-24 T 18-10-2018 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 4.9E-24 T 18-10-2018 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.9E-24 T 18-10-2018 RU84_13070 9389e37ddd8cc3a3edbeb5c583f9c05e 420 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 297 320 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.6E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 Gene3D G3DSA:3.40.50.720 1 244 6.4E-83 T 18-10-2018 RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.0E-5 T 18-10-2018 RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 4.2E-14 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 4.2E-14 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 4.2E-14 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 1.0E-95 T 18-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.1E-66 T 18-10-2018 RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_14445 24bcf5f51ed54c148600a5f39c17203e 244 SUPERFAMILY SSF51735 5 243 1.29E-84 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 ProSitePatterns PS00042 Crp-type HTH domain signature. 178 201 - T 18-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 81 99 - T 18-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 SMART SM00419 170 218 4.5E-13 T 18-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 Gene3D G3DSA:2.60.120.10 21 148 3.0E-41 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 Gene3D G3DSA:1.10.10.10 149 217 3.1E-32 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 SUPERFAMILY SSF51206 20 147 1.15E-30 T 18-10-2018 IPR018490 Cyclic nucleotide-binding-like RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 SMART SM00100 14 132 4.2E-21 T 18-10-2018 IPR000595 Cyclic nucleotide-binding domain RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 192 1.1E-8 T 18-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 207 1.1E-8 T 18-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 Pfam PF00325 Bacterial regulatory proteins, crp family 176 207 2.4E-14 T 18-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 Pfam PF00027 Cyclic nucleotide-binding domain 33 120 4.6E-21 T 18-10-2018 IPR000595 Cyclic nucleotide-binding domain RU84_11470 39cb0a0fe2a6b93b8dc64e46acd9a0e5 235 SUPERFAMILY SSF46785 149 218 9.11E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_16050 c167b65e52d02011b2bc31d8a1c4eca5 272 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 257 5.3E-75 T 18-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RU84_16050 c167b65e52d02011b2bc31d8a1c4eca5 272 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 262 19.596 T 18-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RU84_16050 c167b65e52d02011b2bc31d8a1c4eca5 272 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 262 2.6E-78 T 18-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RU84_16050 c167b65e52d02011b2bc31d8a1c4eca5 272 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 137 149 - T 18-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 327 2.0E-67 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 Gene3D G3DSA:3.30.390.30 348 467 1.5E-39 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 SUPERFAMILY SSF51905 4 370 2.52E-62 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 2.6E-67 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 SUPERFAMILY SSF55424 344 466 9.79E-37 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 5 467 1.5E-170 T 18-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 7.3E-35 T 18-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 1.3E-38 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.3E-38 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 1.3E-38 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 1.3E-38 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 1.3E-38 T 18-10-2018 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 Gene3D G3DSA:3.50.50.60 6 334 7.2E-116 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 Gene3D G3DSA:3.50.50.60 156 277 7.2E-116 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 PIRSF PIRSF000350 1 463 1.5E-87 T 18-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RU84_08785 95a3ed4b6cf6b1b82755ce8308e46b95 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 18-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RU84_03040 2737746859c78218b513c94497170752 552 SMART SM00388 332 396 2.3E-12 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_03040 2737746859c78218b513c94497170752 552 Gene3D G3DSA:3.30.565.10 403 552 5.9E-33 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_03040 2737746859c78218b513c94497170752 552 SMART SM00304 279 331 4.5E-5 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_03040 2737746859c78218b513c94497170752 552 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 441 550 2.3E-17 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03040 2737746859c78218b513c94497170752 552 SUPERFAMILY SSF55874 386 549 1.19E-34 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_03040 2737746859c78218b513c94497170752 552 SUPERFAMILY SSF47384 316 397 1.35E-13 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_03040 2737746859c78218b513c94497170752 552 SMART SM00387 440 552 3.5E-28 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03040 2737746859c78218b513c94497170752 552 SUPERFAMILY SSF158472 281 327 8.5E-8 T 18-10-2018 RU84_03040 2737746859c78218b513c94497170752 552 Pfam PF00512 His Kinase A (phospho-acceptor) domain 332 395 1.0E-11 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_03040 2737746859c78218b513c94497170752 552 Gene3D G3DSA:1.20.1480.50 247 337 6.4E-10 T 18-10-2018 RU84_03040 2737746859c78218b513c94497170752 552 Gene3D G3DSA:1.10.287.130 338 397 1.7E-10 T 18-10-2018 RU84_03040 2737746859c78218b513c94497170752 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 491 1.1E-5 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03040 2737746859c78218b513c94497170752 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 530 1.1E-5 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03040 2737746859c78218b513c94497170752 552 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 505 1.1E-5 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 SMART SM00471 59 261 1.5E-7 T 18-10-2018 IPR003607 HD/PDEase domain RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 Gene3D G3DSA:1.10.3210.10 28 244 2.5E-139 T 18-10-2018 RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 Gene3D G3DSA:1.10.3550.10 114 429 2.5E-139 T 18-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 Pfam PF01966 HD domain 63 144 9.0E-9 T 18-10-2018 IPR006674 HD domain RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 Gene3D G3DSA:1.10.3410.10 245 356 2.5E-139 T 18-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 26 438 6.0E-96 T 18-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 RU84_04590 9f73db3f877c8dc60598567e82d6872f 446 SUPERFAMILY SSF109604 25 385 1.65E-63 T 18-10-2018 RU84_01665 abe1f5027d8d8a9474db6886a54e3265 195 SUPERFAMILY SSF52218 1 193 2.19E-40 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_01665 abe1f5027d8d8a9474db6886a54e3265 195 Gene3D G3DSA:3.40.50.360 1 193 5.6E-61 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_01665 abe1f5027d8d8a9474db6886a54e3265 195 Pfam PF02525 Flavodoxin-like fold 3 188 1.1E-33 T 18-10-2018 IPR003680 Flavodoxin-like fold RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82693 582 679 8.89E-6 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 15 1048 0.0 T 18-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82866 823 1043 2.75E-50 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82866 312 519 3.27E-35 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82714 739 821 3.14E-16 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82693 168 346 9.07E-21 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82714 206 288 2.62E-16 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Pfam PF00873 AcrB/AcrD/AcrF family 18 1040 0.0 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:3.30.70.1440 689 884 2.8E-285 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:1.20.1640.10 529 1038 2.8E-285 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:3.30.70.1320 148 346 2.8E-285 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:3.30.70.1430 583 688 2.8E-285 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:3.30.70.1430 55 835 2.8E-285 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:3.30.2090.10 740 827 2.8E-285 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 SUPERFAMILY SSF82693 55 141 6.02E-22 T 18-10-2018 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:3.30.2090.10 202 293 2.8E-285 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 PRINTS PR00702 Acriflavin resistance protein family signature 352 375 1.6E-19 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 PRINTS PR00702 Acriflavin resistance protein family signature 25 49 1.6E-19 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 PRINTS PR00702 Acriflavin resistance protein family signature 53 71 1.6E-19 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 PRINTS PR00702 Acriflavin resistance protein family signature 566 583 1.6E-19 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 PRINTS PR00702 Acriflavin resistance protein family signature 493 516 1.6E-19 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 PRINTS PR00702 Acriflavin resistance protein family signature 379 400 1.6E-19 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_01325 421c2945c5933dfd4eddd375f24c4d1c 1052 Gene3D G3DSA:1.20.1640.10 27 528 2.8E-285 T 18-10-2018 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 19.495 T 18-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 17 89 2.0E-33 T 18-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 3.1E-29 T 18-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 131 1.8E-40 T 18-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 Gene3D G3DSA:2.60.15.10 2 89 3.6E-29 T 18-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 SUPERFAMILY SSF51344 3 85 4.32E-25 T 18-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 Gene3D G3DSA:1.20.5.440 90 132 1.8E-7 T 18-10-2018 RU84_17540 80ab3c8907698cc7cf2bf8d805b395d5 139 SUPERFAMILY SSF46604 87 135 1.33E-10 T 18-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 173 321 2.0E-27 T 18-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 20 325 40.39 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 66 73 - T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 21 323 1.5E-91 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 SUPERFAMILY SSF53671 20 324 1.06E-92 T 18-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 21 164 2.9E-41 T 18-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 152 163 4.5E-20 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 66 85 4.5E-20 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 288 311 4.5E-20 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 276 285 4.5E-20 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 304 318 1.1E-29 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 239 248 1.1E-29 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 56 78 1.1E-29 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 151 168 1.1E-29 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 94 103 1.1E-29 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 280 285 1.1E-29 T 18-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 Gene3D G3DSA:3.40.50.1370 21 321 8.1E-90 T 18-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RU84_11420 954ea543ba8c6c6165725372fb4c5782 338 Gene3D G3DSA:3.40.50.1370 152 310 8.1E-90 T 18-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RU84_10445 00c691b9d296da804ad9ecdb309cef63 405 Gene3D G3DSA:1.20.1250.20 13 387 7.2E-38 T 18-10-2018 RU84_10445 00c691b9d296da804ad9ecdb309cef63 405 SUPERFAMILY SSF103473 15 390 1.57E-43 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10445 00c691b9d296da804ad9ecdb309cef63 405 Pfam PF07690 Major Facilitator Superfamily 25 275 4.1E-22 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_02255 3dabfda8be41f6aa550803f38e38c720 415 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 278 6.7E-59 T 18-10-2018 IPR017039 Virulence factor BrkB RU84_02255 3dabfda8be41f6aa550803f38e38c720 415 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 2 302 21.268 T 18-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial RU84_02255 3dabfda8be41f6aa550803f38e38c720 415 Pfam PF03631 Virulence factor BrkB 30 277 3.9E-52 T 18-10-2018 IPR017039 Virulence factor BrkB RU84_11400 182a916ad9b83b42d7ec3b2b6c95be6b 208 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 75 8.3E-14 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_11400 182a916ad9b83b42d7ec3b2b6c95be6b 208 Pfam PF00043 Glutathione S-transferase, C-terminal domain 113 196 4.7E-5 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_11400 182a916ad9b83b42d7ec3b2b6c95be6b 208 SUPERFAMILY SSF47616 72 202 2.51E-23 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_11400 182a916ad9b83b42d7ec3b2b6c95be6b 208 SUPERFAMILY SSF52833 1 85 8.24E-23 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_11400 182a916ad9b83b42d7ec3b2b6c95be6b 208 Gene3D G3DSA:3.40.30.10 1 83 4.4E-33 T 18-10-2018 RU84_11400 182a916ad9b83b42d7ec3b2b6c95be6b 208 Gene3D G3DSA:1.20.1050.10 85 203 7.4E-42 T 18-10-2018 RU84_15565 e9ef408ff0add8821df900ecae911a85 435 Pfam PF02321 Outer membrane efflux protein 36 219 1.4E-13 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_15565 e9ef408ff0add8821df900ecae911a85 435 Pfam PF02321 Outer membrane efflux protein 252 422 2.8E-16 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_15565 e9ef408ff0add8821df900ecae911a85 435 Gene3D G3DSA:1.20.1600.10 25 425 2.4E-45 T 18-10-2018 RU84_15565 e9ef408ff0add8821df900ecae911a85 435 SUPERFAMILY SSF56954 13 423 1.1E-54 T 18-10-2018 RU84_04050 40db12dddac2f4c76b66d51feda8d3d0 178 Gene3D G3DSA:2.60.40.1190 25 176 1.8E-5 T 18-10-2018 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 Pfam PF00202 Aminotransferase class-III 26 396 3.7E-101 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 Gene3D G3DSA:3.90.1150.10 26 391 4.9E-124 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 Gene3D G3DSA:3.40.640.10 60 308 4.9E-124 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 16 401 68.376 T 18-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 226 263 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 397 5.2E-130 T 18-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 PIRSF PIRSF000521 173 401 7.4E-34 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 PIRSF PIRSF000521 12 163 6.4E-11 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_07680 ff44a3ef8b4cc940744c5fd5e9ca2916 402 SUPERFAMILY SSF53383 14 398 1.99E-110 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_04435 a157d5cb0fc0c82b08ea1d2d4af150d0 411 Pfam PF02687 FtsX-like permease family 298 404 2.2E-12 T 18-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RU84_04435 a157d5cb0fc0c82b08ea1d2d4af150d0 411 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 411 1.3E-153 T 18-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 RU84_04435 a157d5cb0fc0c82b08ea1d2d4af150d0 411 Pfam PF12704 MacB-like periplasmic core domain 28 240 3.8E-15 T 18-10-2018 IPR025857 MacB-like periplasmic core domain RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 SUPERFAMILY SSF51905 3 191 5.89E-40 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 Gene3D G3DSA:3.50.50.60 4 297 3.8E-86 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 7.0E-14 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 7.0E-14 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 7.0E-14 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 7.0E-14 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 2.6E-11 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 2.6E-11 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 2.6E-11 T 18-10-2018 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 Gene3D G3DSA:3.50.50.60 113 238 3.8E-86 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 297 1.2E-53 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 Pfam PF14759 Reductase C-terminal 316 401 7.3E-17 T 18-10-2018 IPR028202 Reductase, C-terminal RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 Gene3D G3DSA:3.30.390.30 316 402 1.4E-14 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 SUPERFAMILY SSF51905 144 306 8.85E-25 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12995 9b9be1b1edf2c2a5b068b9318b694886 403 SUPERFAMILY SSF55424 309 401 8.51E-18 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_15855 44759ce7ad41423383be5f01294425bd 263 Pfam PF13413 Helix-turn-helix domain 29 89 3.0E-18 T 18-10-2018 RU84_15855 44759ce7ad41423383be5f01294425bd 263 Pfam PF13464 Domain of unknown function (DUF4115) 190 261 3.1E-11 T 18-10-2018 IPR025194 Domain of unknown function DUF4115 RU84_15855 44759ce7ad41423383be5f01294425bd 263 Gene3D G3DSA:1.10.260.40 18 105 3.9E-22 T 18-10-2018 RU84_03710 e3df5c77b2aed81f0bc9117a20ac257e 549 Pfam PF00884 Sulfatase 239 530 2.8E-56 T 18-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RU84_03710 e3df5c77b2aed81f0bc9117a20ac257e 549 Gene3D G3DSA:3.40.720.10 217 549 3.1E-92 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_03710 e3df5c77b2aed81f0bc9117a20ac257e 549 Pfam PF08019 Domain of unknown function (DUF1705) 61 210 3.5E-41 T 18-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 RU84_03710 e3df5c77b2aed81f0bc9117a20ac257e 549 SUPERFAMILY SSF53649 239 532 1.37E-25 T 18-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Gene3D G3DSA:3.30.43.10 1 98 7.1E-27 T 18-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 466 1.1E-61 T 18-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 SUPERFAMILY SSF56176 4 222 1.73E-67 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Gene3D G3DSA:1.10.45.10 427 466 1.2E-14 T 18-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Gene3D G3DSA:3.30.465.10 100 220 2.2E-39 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Gene3D G3DSA:3.30.70.2190 222 338 1.6E-25 T 18-10-2018 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 SUPERFAMILY SSF55103 226 468 3.11E-61 T 18-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Gene3D G3DSA:3.30.70.2740 341 426 4.2E-27 T 18-10-2018 RU84_01650 729986b65528699bee3364b8a9d3f7e9 469 Pfam PF01565 FAD binding domain 46 184 7.6E-40 T 18-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 PIRSF PIRSF000729 10 377 2.7E-130 T 18-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 Pfam PF00696 Amino acid kinase family 15 244 1.3E-46 T 18-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 Pfam PF01472 PUA domain 286 360 2.7E-20 T 18-10-2018 IPR002478 PUA domain GO:0003723 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 Gene3D G3DSA:2.30.130.10 275 377 1.2E-30 T 18-10-2018 IPR036974 PUA domain superfamily GO:0003723 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 SUPERFAMILY SSF88697 286 376 3.31E-20 T 18-10-2018 IPR015947 PUA-like superfamily RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 SUPERFAMILY SSF53633 15 265 5.11E-74 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 TIGRFAM TIGR01027 proB: glutamate 5-kinase 15 375 1.9E-128 T 18-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 Gene3D G3DSA:3.40.1160.10 5 274 3.3E-94 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 SMART SM00359 286 369 1.2E-12 T 18-10-2018 IPR002478 PUA domain GO:0003723 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 Hamap MF_00456 Glutamate 5-kinase [proB]. 15 268 35.788 T 18-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 ProSitePatterns PS00902 Glutamate 5-kinase signature. 216 233 - T 18-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 PRINTS PR00474 Glutamate 5-kinase family signature 86 114 3.2E-48 T 18-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 3.2E-48 T 18-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 PRINTS PR00474 Glutamate 5-kinase family signature 218 238 3.2E-48 T 18-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 PRINTS PR00474 Glutamate 5-kinase family signature 126 147 3.2E-48 T 18-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RU84_04865 972e01c64cefdf1842b74d4c6b26aeb5 377 PRINTS PR00474 Glutamate 5-kinase family signature 52 66 3.2E-48 T 18-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 RU84_00615 364bff9196114c99f49a3d75198b5040 627 Pfam PF01751 Toprim domain 413 507 1.7E-12 T 18-10-2018 IPR006171 TOPRIM domain RU84_00615 364bff9196114c99f49a3d75198b5040 627 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 621 3.2E-287 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 18-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00615 364bff9196114c99f49a3d75198b5040 627 SMART SM00387 26 173 8.3E-23 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00615 364bff9196114c99f49a3d75198b5040 627 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 555 617 4.6E-23 T 18-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 Gene3D G3DSA:3.30.565.10 1 215 4.8E-73 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_00615 364bff9196114c99f49a3d75198b5040 627 Gene3D G3DSA:3.40.50.670 389 620 2.3E-93 T 18-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00615 364bff9196114c99f49a3d75198b5040 627 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 170 4.0E-19 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 581 595 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 2.6E-94 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 SUPERFAMILY SSF56719 388 618 4.71E-78 T 18-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RU84_00615 364bff9196114c99f49a3d75198b5040 627 SMART SM00433 33 621 2.5E-206 T 18-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00615 364bff9196114c99f49a3d75198b5040 627 Pfam PF00204 DNA gyrase B 218 385 1.8E-39 T 18-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 479 495 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 559 575 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 497 514 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 517 529 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 30 45 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 108 122 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 266 279 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 414 428 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 PRINTS PR00418 DNA topoisomerase II family signature 65 78 4.1E-59 T 18-10-2018 RU84_00615 364bff9196114c99f49a3d75198b5040 627 SUPERFAMILY SSF54211 217 382 1.44E-43 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_00615 364bff9196114c99f49a3d75198b5040 627 Gene3D G3DSA:3.30.230.10 216 388 3.0E-52 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_00615 364bff9196114c99f49a3d75198b5040 627 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 625 46.512 T 18-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_00615 364bff9196114c99f49a3d75198b5040 627 SUPERFAMILY SSF55874 3 214 5.76E-62 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_04705 1f0285c2d8c10c13ff1cfc54eb66b02e 199 Pfam PF02223 Thymidylate kinase 5 193 9.2E-54 T 18-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 RU84_04705 1f0285c2d8c10c13ff1cfc54eb66b02e 199 SUPERFAMILY SSF52540 1 196 3.08E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04705 1f0285c2d8c10c13ff1cfc54eb66b02e 199 Gene3D G3DSA:3.40.50.300 1 199 3.1E-65 T 18-10-2018 RU84_04705 1f0285c2d8c10c13ff1cfc54eb66b02e 199 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 191 1.0E-54 T 18-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RU84_04705 1f0285c2d8c10c13ff1cfc54eb66b02e 199 Hamap MF_00165 Thymidylate kinase [tmk]. 1 198 27.688 T 18-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 399 4.4E-40 T 18-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 SUPERFAMILY SSF46589 1 112 3.5E-30 T 18-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 PIRSF PIRSF001529 1 423 5.5E-185 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 8.1E-33 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 8.1E-33 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 8.1E-33 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 8.1E-33 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 8.1E-33 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 416 3.5E-175 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 Gene3D G3DSA:3.30.930.10 105 423 5.4E-120 T 18-10-2018 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 2.1E-30 T 18-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 SUPERFAMILY SSF55681 116 417 1.09E-103 T 18-10-2018 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 421 41.342 T 18-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 RU84_03840 b7af1545a54fc6300a5cb53ff061c2cf 423 Gene3D G3DSA:1.10.287.40 1 104 1.2E-23 T 18-10-2018 RU84_09945 2501b7c82110f4cbe61663f332f6500d 668 SUPERFAMILY SSF53474 377 646 2.05E-22 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_09945 2501b7c82110f4cbe61663f332f6500d 668 Gene3D G3DSA:3.40.50.1820 375 639 1.3E-24 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 TIGRFAM TIGR02961 allantoicase: allantoicase 19 332 3.5E-143 T 18-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 PIRSF PIRSF016516 2 335 4.2E-148 T 18-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 SUPERFAMILY SSF49785 174 333 3.68E-55 T 18-10-2018 IPR008979 Galactose-binding-like domain superfamily RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 Hamap MF_00813 Probable allantoicase [alc]. 1 334 46.837 T 18-10-2018 IPR005164 Allantoicase GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 Gene3D G3DSA:2.60.120.260 173 335 1.1E-56 T 18-10-2018 IPR008979 Galactose-binding-like domain superfamily RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 Gene3D G3DSA:2.60.120.260 9 172 4.9E-60 T 18-10-2018 IPR008979 Galactose-binding-like domain superfamily RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 SUPERFAMILY SSF49785 17 172 1.4E-58 T 18-10-2018 IPR008979 Galactose-binding-like domain superfamily RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 Pfam PF03561 Allantoicase repeat 27 170 2.0E-48 T 18-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RU84_00625 6a6985d9427c442e51090bb63ee055eb 336 Pfam PF03561 Allantoicase repeat 191 331 3.1E-47 T 18-10-2018 IPR015908 Allantoicase domain GO:0000256|GO:0004037 KEGG: 00230+3.5.3.4|MetaCyc: PWY-5697 RU84_00960 b8f06714619a08c7d19acea8aa889493 224 Gene3D G3DSA:1.20.910.10 1 221 5.4E-66 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_00960 b8f06714619a08c7d19acea8aa889493 224 Pfam PF03070 TENA/THI-4/PQQC family 16 214 7.5E-37 T 18-10-2018 IPR004305 Thiaminase-2/PQQC RU84_00960 b8f06714619a08c7d19acea8aa889493 224 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 15 214 4.2E-47 T 18-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 RU84_00960 b8f06714619a08c7d19acea8aa889493 224 SUPERFAMILY SSF48613 1 213 1.42E-67 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 Pfam PF01327 Polypeptide deformylase 6 160 3.2E-44 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 PIRSF PIRSF004749 1 160 1.2E-47 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 SUPERFAMILY SSF56420 4 160 2.09E-52 T 18-10-2018 IPR036821 Peptide deformylase superfamily RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 Gene3D G3DSA:3.90.45.10 1 160 1.7E-53 T 18-10-2018 IPR036821 Peptide deformylase superfamily RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 Hamap MF_00163 Peptide deformylase [def]. 3 160 24.369 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 PRINTS PR01576 Peptide deformylase signature 132 160 1.5E-31 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 PRINTS PR01576 Peptide deformylase signature 113 131 1.5E-31 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 PRINTS PR01576 Peptide deformylase signature 37 66 1.5E-31 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 PRINTS PR01576 Peptide deformylase signature 101 112 1.5E-31 T 18-10-2018 IPR023635 Peptide deformylase RU84_12945 a81ec72a4e05e8dd541e488f740bc6ed 160 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 9 160 5.9E-42 T 18-10-2018 IPR023635 Peptide deformylase RU84_12695 c45118caa29fac862e9af1e69479cfae 100 SUPERFAMILY SSF54111 1 99 8.63E-45 T 18-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12695 c45118caa29fac862e9af1e69479cfae 100 Pfam PF00547 Urease, gamma subunit 1 99 9.4E-46 T 18-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12695 c45118caa29fac862e9af1e69479cfae 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 1.5E-51 T 18-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12695 c45118caa29fac862e9af1e69479cfae 100 PIRSF PIRSF001223 1 100 1.2E-48 T 18-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12695 c45118caa29fac862e9af1e69479cfae 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-43 T 18-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12695 c45118caa29fac862e9af1e69479cfae 100 Gene3D G3DSA:3.30.280.10 1 100 8.1E-46 T 18-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12695 c45118caa29fac862e9af1e69479cfae 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.006 T 18-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 30 209 6.0E-22 T 18-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 Gene3D G3DSA:3.10.610.10 60 165 4.5E-7 T 18-10-2018 RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 SUPERFAMILY SSF54523 62 222 5.89E-24 T 18-10-2018 RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 Pfam PF11612 Type II secretion system (T2SS), protein J 83 212 3.7E-17 T 18-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 29 49 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 29 49 5.3E-7 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_09375 20ad3185a3b97c772c7d60bcb62b2344 233 Pfam PF07963 Prokaryotic N-terminal methylation motif 27 49 2.7E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_16790 cde8791f317a28a241b166bc2bc0a36c 108 Pfam PF06865 Protein of unknown function (DUF1255) 13 105 1.5E-32 T 18-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 RU84_16790 cde8791f317a28a241b166bc2bc0a36c 108 Gene3D G3DSA:2.60.120.10 1 108 3.7E-47 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_16790 cde8791f317a28a241b166bc2bc0a36c 108 SUPERFAMILY SSF51182 13 105 1.08E-30 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_16790 cde8791f317a28a241b166bc2bc0a36c 108 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 12 107 25.159 T 18-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 RU84_12445 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_12445 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_12445 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_12445 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_10200 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10200 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_10200 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_10200 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_10305 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10305 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_10305 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_10305 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_15685 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_15685 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_15685 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_15685 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_08320 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_08320 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_08320 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_08320 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_14255 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_14255 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_14255 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_14255 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_11970 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_11970 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_11970 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_11970 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_10855 9c7662eaaac8238bdca3066e73ea9536 341 Gene3D G3DSA:3.30.420.10 172 334 1.7E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10855 9c7662eaaac8238bdca3066e73ea9536 341 SUPERFAMILY SSF53098 180 326 8.35E-28 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_10855 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_10855 9c7662eaaac8238bdca3066e73ea9536 341 Pfam PF00665 Integrase core domain 180 285 2.0E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 Gene3D G3DSA:1.10.287.470 105 188 2.0E-10 T 18-10-2018 RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 Pfam PF13437 HlyD family secretion protein 200 281 6.9E-12 T 18-10-2018 RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 Gene3D G3DSA:2.40.30.170 214 333 2.7E-25 T 18-10-2018 RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 Pfam PF13533 Biotin-lipoyl like 48 96 2.3E-12 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 Gene3D G3DSA:1.10.287.470 82 104 4.9E-12 T 18-10-2018 RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 SUPERFAMILY SSF111369 47 249 4.45E-13 T 18-10-2018 RU84_16815 450fad39d0abfb4eb06a9f1057a64b00 333 Gene3D G3DSA:2.40.50.100 49 81 4.9E-12 T 18-10-2018 RU84_09540 0befd6783255979efd439b5b9ff58e26 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 123 36.725 T 18-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RU84_09540 0befd6783255979efd439b5b9ff58e26 124 Gene3D G3DSA:2.40.50.100 1 124 5.2E-50 T 18-10-2018 RU84_09540 0befd6783255979efd439b5b9ff58e26 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 122 9.4E-51 T 18-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 RU84_09540 0befd6783255979efd439b5b9ff58e26 124 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 47 76 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_09540 0befd6783255979efd439b5b9ff58e26 124 SUPERFAMILY SSF51230 3 122 3.04E-45 T 18-10-2018 IPR011053 Single hybrid motif RU84_09540 0befd6783255979efd439b5b9ff58e26 124 Pfam PF01597 Glycine cleavage H-protein 7 122 3.0E-46 T 18-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate RU84_00635 74a35542be1c1305f9aa6e67b78aec79 241 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 57 194 9.3E-10 T 18-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 RU84_00635 74a35542be1c1305f9aa6e67b78aec79 241 SUPERFAMILY SSF111364 25 241 2.88E-64 T 18-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 RU84_00635 74a35542be1c1305f9aa6e67b78aec79 241 Gene3D G3DSA:2.40.230.20 17 235 4.9E-24 T 18-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 RU84_16265 5c76307e7015719071af54b3f561dde8 359 Gene3D G3DSA:3.40.718.10 2 359 2.8E-146 T 18-10-2018 RU84_16265 5c76307e7015719071af54b3f561dde8 359 SUPERFAMILY SSF53659 1 358 3.46E-121 T 18-10-2018 RU84_16265 5c76307e7015719071af54b3f561dde8 359 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 358 51.805 T 18-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RU84_16265 5c76307e7015719071af54b3f561dde8 359 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 245 264 - T 18-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RU84_16265 5c76307e7015719071af54b3f561dde8 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 354 4.7E-138 T 18-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RU84_16265 5c76307e7015719071af54b3f561dde8 359 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 353 1.8E-157 T 18-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 RU84_16265 5c76307e7015719071af54b3f561dde8 359 SMART SM01329 4 354 2.4E-202 T 18-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RU84_00885 3ad042ccecca03c72d71f6c4f61c76f4 245 Gene3D G3DSA:3.40.50.360 4 183 1.1E-41 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_00885 3ad042ccecca03c72d71f6c4f61c76f4 245 Pfam PF03358 NADPH-dependent FMN reductase 11 155 1.8E-31 T 18-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RU84_00885 3ad042ccecca03c72d71f6c4f61c76f4 245 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 11 183 1.2E-71 T 18-10-2018 IPR019912 FMN reductase, MsuE-like RU84_00885 3ad042ccecca03c72d71f6c4f61c76f4 245 SUPERFAMILY SSF52218 6 181 5.12E-32 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 211 332 4.9E-31 T 18-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 SUPERFAMILY SSF56176 9 195 2.62E-38 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 344 74.919 T 18-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 Pfam PF01565 FAD binding domain 23 145 8.0E-23 T 18-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 Gene3D G3DSA:3.30.465.10 73 222 2.2E-51 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 329 2.0E-66 T 18-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 SUPERFAMILY SSF56194 208 335 4.05E-44 T 18-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 Gene3D G3DSA:3.30.43.10 1 71 6.8E-22 T 18-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RU84_07195 b24ea22340d06b32bd5e01d83feec6ae 344 Gene3D G3DSA:3.90.78.10 223 341 7.6E-41 T 18-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 595 628 - T 18-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 Gene3D G3DSA:3.30.1370.120 24 186 6.0E-53 T 18-10-2018 IPR038591 NolW-like superfamily RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 517 527 1.3E-34 T 18-10-2018 IPR001775 GspD/PilQ family RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 482 506 1.3E-34 T 18-10-2018 IPR001775 GspD/PilQ family RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 614 632 1.3E-34 T 18-10-2018 IPR001775 GspD/PilQ family RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 637 651 1.3E-34 T 18-10-2018 IPR001775 GspD/PilQ family RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 PRINTS PR00811 Bacterial general secretion pathway protein D signature 394 404 1.3E-34 T 18-10-2018 IPR001775 GspD/PilQ family RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 34 659 1.8E-164 T 18-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 Pfam PF03958 Bacterial type II/III secretion system short domain 193 261 5.3E-13 T 18-10-2018 IPR005644 NolW-like RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 Pfam PF03958 Bacterial type II/III secretion system short domain 129 185 1.1E-7 T 18-10-2018 IPR005644 NolW-like RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 Pfam PF03958 Bacterial type II/III secretion system short domain 268 394 8.7E-13 T 18-10-2018 IPR005644 NolW-like RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 Gene3D G3DSA:3.30.1370.120 191 258 6.3E-16 T 18-10-2018 IPR038591 NolW-like superfamily RU84_17040 2978fa8db6ae7c0a34ebc777c814f1fe 758 Pfam PF00263 Bacterial type II and III secretion system protein 486 649 6.9E-49 T 18-10-2018 IPR004846 Type II/III secretion system GO:0009306 RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 SUPERFAMILY SSF51604 137 444 1.34E-77 T 18-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 SUPERFAMILY SSF54826 5 135 1.98E-28 T 18-10-2018 RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 SMART SM00922 183 283 2.0E-15 T 18-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 Gene3D G3DSA:3.30.390.10 9 412 1.2E-176 T 18-10-2018 IPR029017 Enolase-like, N-terminal RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 Gene3D G3DSA:3.20.20.120 137 398 1.2E-176 T 18-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 Pfam PF13378 Enolase C-terminal domain-like 187 403 7.5E-36 T 18-10-2018 IPR029065 Enolase C-terminal domain-like RU84_11730 216105fea67ffd390b9a2f2c812cc4e8 444 TIGRFAM TIGR03247 glucar-dehydr: glucarate dehydratase 4 444 8.9E-263 T 18-10-2018 IPR017653 Glucarate dehydratase GO:0000287|GO:0008872|GO:0019394 KEGG: 00053+4.2.1.40|MetaCyc: PWY-6499 RU84_01050 c85d08bdad47cd37cfbebbf0bf723aef 415 Pfam PF07690 Major Facilitator Superfamily 38 260 1.8E-25 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_01050 c85d08bdad47cd37cfbebbf0bf723aef 415 SUPERFAMILY SSF103473 24 409 2.62E-54 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_01050 c85d08bdad47cd37cfbebbf0bf723aef 415 Gene3D G3DSA:1.20.1250.20 28 412 1.1E-46 T 18-10-2018 RU84_00410 25f582753ec0dbc8460e9476e1b960e3 608 Pfam PF05960 Bacterial protein of unknown function (DUF885) 67 597 2.9E-168 T 18-10-2018 IPR010281 Protein of unknown function DUF885 RU84_18715 c45f88270a7095520a4de6280c491f3a 225 Pfam PF01965 DJ-1/PfpI family 25 221 1.3E-14 T 18-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RU84_18715 c45f88270a7095520a4de6280c491f3a 225 Gene3D G3DSA:3.40.50.880 1 224 4.8E-80 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_18715 c45f88270a7095520a4de6280c491f3a 225 SUPERFAMILY SSF52317 1 224 2.54E-75 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_08045 16fada492d924549c4a4aae919b5f18e 388 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 33 95 1.1E-4 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_08045 16fada492d924549c4a4aae919b5f18e 388 SUPERFAMILY SSF47203 230 375 7.8E-12 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_08045 16fada492d924549c4a4aae919b5f18e 388 PIRSF PIRSF016578 2 387 3.0E-88 T 18-10-2018 RU84_08045 16fada492d924549c4a4aae919b5f18e 388 Gene3D G3DSA:1.10.540.10 11 117 6.5E-20 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_08045 16fada492d924549c4a4aae919b5f18e 388 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 237 366 2.8E-21 T 18-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RU84_08045 16fada492d924549c4a4aae919b5f18e 388 SUPERFAMILY SSF56645 21 212 2.36E-21 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_08045 16fada492d924549c4a4aae919b5f18e 388 Gene3D G3DSA:1.20.140.10 213 386 7.2E-28 T 18-10-2018 RU84_08045 16fada492d924549c4a4aae919b5f18e 388 Gene3D G3DSA:2.40.110.10 119 211 5.7E-21 T 18-10-2018 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 SUPERFAMILY SSF82051 3 158 4.32E-57 T 18-10-2018 IPR036726 GTP1/OBG domain superfamily RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 Gene3D G3DSA:3.40.50.300 159 340 1.3E-48 T 18-10-2018 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 Pfam PF01926 50S ribosome-binding GTPase 161 284 3.8E-23 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 3.2E-144 T 18-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 Pfam PF01018 GTP1/OBG 4 158 1.1E-59 T 18-10-2018 IPR006169 GTP1/OBG domain RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 18-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 PIRSF PIRSF002401 1 381 5.7E-137 T 18-10-2018 IPR035101 GTP-binding protein, Obg-type RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 SUPERFAMILY SSF52540 151 337 2.96E-47 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 Gene3D G3DSA:2.70.210.12 1 158 2.3E-60 T 18-10-2018 IPR036726 GTP1/OBG domain superfamily RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.2E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.2E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.2E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.2E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04860 68d46adfcbd3e90410d848c49cd77f3f 406 Hamap MF_01454 GTPase Obg [obg]. 2 333 47.618 T 18-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 Gene3D G3DSA:3.30.420.10 1 159 1.2E-52 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 Pfam PF00929 Exonuclease 234 391 3.4E-30 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 232 451 7.9E-79 T 18-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 SUPERFAMILY SSF53098 4 138 5.06E-48 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 SMART SM00479 232 402 2.0E-40 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 Gene3D G3DSA:3.30.420.10 225 407 5.1E-49 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 Hamap MF_00042 Ribonuclease H [rnhA]. 2 145 27.534 T 18-10-2018 IPR022892 Ribonuclease HI GO:0004523 RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 Pfam PF00075 RNase H 4 136 1.3E-41 T 18-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 SUPERFAMILY SSF53098 225 401 9.62E-48 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_12140 350df43e9a9a47dbd3c731a6cef8a3ec 459 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 234 440 4.2E-57 T 18-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 7 261 5.9E-98 T 18-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 179 261 6.5E-25 T 18-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 PIRSF PIRSF000456 4 262 1.5E-104 T 18-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 51 1.7E-9 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 142 8.9E-7 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 Gene3D G3DSA:1.20.1180.10 196 262 7.5E-26 T 18-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 19 47 - T 18-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 4 262 43.036 T 18-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 152 180 - T 18-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 Gene3D G3DSA:2.160.10.10 1 195 2.3E-62 T 18-10-2018 RU84_07500 d448deb5b6200111a8cc45996b1c5250 262 SUPERFAMILY SSF51161 3 262 1.13E-78 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 Gene3D G3DSA:1.10.287.110 1 74 7.2E-18 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 SUPERFAMILY SSF46565 1 68 3.53E-14 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 160 17.334 T 18-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 15 158 6.0E-27 T 18-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 Pfam PF07743 HSCB C-terminal oligomerisation domain 82 153 3.5E-14 T 18-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 SMART SM00271 1 61 3.4E-8 T 18-10-2018 IPR001623 DnaJ domain RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 Pfam PF00226 DnaJ domain 5 65 1.9E-8 T 18-10-2018 IPR001623 DnaJ domain RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 Gene3D G3DSA:1.20.1280.20 75 161 3.7E-19 T 18-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RU84_09160 5a3aa474680b53ecce2a1a29554c37f7 172 SUPERFAMILY SSF47144 75 161 1.7E-18 T 18-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 SUPERFAMILY SSF47384 129 196 4.9E-14 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 361 3.9E-16 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 SMART SM00387 241 364 4.7E-23 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 SMART SM00388 137 201 7.7E-12 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 9 83 1.7E-6 T 18-10-2018 IPR000014 PAS domain RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 Pfam PF00989 PAS fold 8 97 5.1E-10 T 18-10-2018 IPR013767 PAS fold GO:0006355 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 2.2E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 2.2E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 2.2E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 Gene3D G3DSA:3.30.450.20 9 120 7.8E-16 T 18-10-2018 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 194 1.3E-13 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 SUPERFAMILY SSF55874 203 362 5.89E-34 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 Gene3D G3DSA:3.30.565.10 200 362 2.4E-38 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 SMART SM00091 7 75 2.4E-6 T 18-10-2018 IPR000014 PAS domain RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 Gene3D G3DSA:1.10.287.130 140 197 9.3E-15 T 18-10-2018 RU84_07440 f3b5967a2aabe77a2d1fba99c1c1d2b6 369 SUPERFAMILY SSF55785 9 100 1.39E-9 T 18-10-2018 IPR035965 PAS domain superfamily RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 Pfam PF02222 ATP-grasp domain 125 303 1.2E-50 T 18-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 SUPERFAMILY SSF56059 115 321 2.47E-55 T 18-10-2018 RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 9 399 50.368 T 18-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 Gene3D G3DSA:3.30.470.20 199 402 3.4E-59 T 18-10-2018 RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 Gene3D G3DSA:3.30.1490.20 125 198 2.2E-31 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 SUPERFAMILY SSF52440 4 114 4.32E-29 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 15 399 2.2E-168 T 18-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 Gene3D G3DSA:3.40.50.20 3 124 1.9E-49 T 18-10-2018 RU84_09870 7f9197e0dbf526ecc7d8625e40869b9d 402 SUPERFAMILY SSF51246 328 398 3.3E-16 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_15275 64634d28ad957e60906b59b240932cc9 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 95 2.3E-43 T 18-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 RU84_15275 64634d28ad957e60906b59b240932cc9 98 Gene3D G3DSA:4.10.520.10 2 97 3.3E-34 T 18-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 3.1E-16 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 3.1E-16 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 3.1E-16 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 29.567 T 18-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 RU84_15275 64634d28ad957e60906b59b240932cc9 98 SUPERFAMILY SSF47729 4 94 1.47E-30 T 18-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 18-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 Pfam PF00216 Bacterial DNA-binding protein 4 92 3.8E-30 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_15275 64634d28ad957e60906b59b240932cc9 98 SMART SM00411 4 93 4.8E-37 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_04995 532158684c6a06279e0509d3e22776de 271 Gene3D G3DSA:3.10.310.10 117 259 2.4E-82 T 18-10-2018 RU84_04995 532158684c6a06279e0509d3e22776de 271 PIRSF PIRSF016184 1 270 4.6E-49 T 18-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RU84_04995 532158684c6a06279e0509d3e22776de 271 SUPERFAMILY SSF54506 2 269 5.34E-71 T 18-10-2018 RU84_04995 532158684c6a06279e0509d3e22776de 271 Pfam PF02567 Phenazine biosynthesis-like protein 6 265 2.6E-55 T 18-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RU84_04995 532158684c6a06279e0509d3e22776de 271 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 228 5.7E-38 T 18-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RU84_04995 532158684c6a06279e0509d3e22776de 271 Gene3D G3DSA:3.10.310.10 3 262 2.4E-82 T 18-10-2018 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 Gene3D G3DSA:3.30.1130.10 132 270 4.2E-55 T 18-10-2018 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 PIRSF PIRSF004750 1 270 9.3E-111 T 18-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 SUPERFAMILY SSF55620 169 253 6.45E-11 T 18-10-2018 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 TIGRFAM TIGR03138 QueF: queuine synthase 3 270 2.5E-114 T 18-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 Gene3D G3DSA:3.30.1130.10 14 130 8.7E-41 T 18-10-2018 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 270 121.551 T 18-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 122 1.4E-38 T 18-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RU84_05685 f6ed862b588adc0c3625702714757fdc 270 Pfam PF14489 QueF-like protein 183 254 2.0E-21 T 18-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 RU84_02845 711c5eebbd5c92d0f52adbfc19c1ece2 300 PIRSF PIRSF020481 1 300 2.5E-97 T 18-10-2018 IPR014507 Baseplate assembly protein J, predicted RU84_02845 711c5eebbd5c92d0f52adbfc19c1ece2 300 Pfam PF04865 Baseplate J-like protein 118 260 1.5E-20 T 18-10-2018 IPR006949 Baseplate protein J-like RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 Gene3D G3DSA:2.40.170.20 182 718 3.3E-161 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 70 170 1.8E-12 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 Pfam PF00593 TonB dependent receptor 261 717 4.0E-49 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 718 8.0E-108 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 701 718 - T 18-10-2018 IPR010917 TonB-dependent receptor, conserved site RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 SUPERFAMILY SSF56935 35 718 3.21E-121 T 18-10-2018 RU84_07035 04e7f8550ab24dd526fc6d01b29c0bc2 718 Gene3D G3DSA:2.170.130.10 48 179 1.5E-36 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 PIRSF PIRSF001174 6 789 0.0 T 18-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 SMART SM00464 19 214 2.9E-62 T 18-10-2018 IPR003111 Lon, substrate-binding domain RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 TIGRFAM TIGR00763 lon: endopeptidase La 21 784 4.2E-281 T 18-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Gene3D G3DSA:3.40.50.300 326 503 6.3E-63 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Gene3D G3DSA:1.10.8.60 504 598 5.2E-32 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 584 786 1.1E-84 T 18-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Hamap MF_01973 Lon protease [lon]. 20 786 67.225 T 18-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 717 736 7.9E-50 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 687 706 7.9E-50 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 369 388 7.9E-50 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 609 625 7.9E-50 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 740 758 7.9E-50 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Gene3D G3DSA:3.30.230.10 599 786 2.0E-74 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 SMART SM00382 361 505 2.9E-10 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Gene3D G3DSA:2.30.130.40 13 127 3.0E-28 T 18-10-2018 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 690 698 - T 18-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 SUPERFAMILY SSF54211 609 784 1.78E-54 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 SUPERFAMILY SSF52540 327 598 1.47E-50 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 SUPERFAMILY SSF88697 19 212 1.07E-29 T 18-10-2018 IPR015947 PUA-like superfamily RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 365 501 6.0E-20 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 19 212 2.2E-29 T 18-10-2018 IPR003111 Lon, substrate-binding domain RU84_12605 de6f3cda393f9e28d421ebc389dd79f9 809 Gene3D G3DSA:1.20.58.1480 132 256 1.4E-23 T 18-10-2018 RU84_15895 3cf881bb789f3de74badb2b26fff54ea 339 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 4 337 48.306 T 18-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 RU84_15895 3cf881bb789f3de74badb2b26fff54ea 339 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 18-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 RU84_15895 3cf881bb789f3de74badb2b26fff54ea 339 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 7 301 1.1E-72 T 18-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 RU84_15895 3cf881bb789f3de74badb2b26fff54ea 339 Gene3D G3DSA:3.20.20.300 1 337 1.3E-110 T 18-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 RU84_15895 3cf881bb789f3de74badb2b26fff54ea 339 SUPERFAMILY SSF51445 3 311 3.16E-78 T 18-10-2018 IPR017853 Glycoside hydrolase superfamily RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 SUPERFAMILY SSF52540 1 237 1.12E-13 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 SUPERFAMILY SSF75138 229 352 5.1E-16 T 18-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Gene3D G3DSA:3.40.1390.20 223 366 6.0E-11 T 18-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 SUPERFAMILY SSF53659 392 708 4.07E-89 T 18-10-2018 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Pfam PF13500 AAA domain 3 227 1.0E-22 T 18-10-2018 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 PIRSF PIRSF006107 1 712 0.0 T 18-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 405 704 6.4E-127 T 18-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Gene3D G3DSA:3.40.50.10750 527 680 5.3E-130 T 18-10-2018 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Pfam PF07085 DRTGG domain 233 344 1.5E-19 T 18-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Gene3D G3DSA:3.40.50.10950 398 707 5.3E-130 T 18-10-2018 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Gene3D G3DSA:3.40.50.300 3 199 6.2E-9 T 18-10-2018 RU84_15945 70c68734a0eb46fd5f80e23e7165a31d 714 Pfam PF01515 Phosphate acetyl/butaryl transferase 390 704 8.4E-118 T 18-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RU84_01145 3ce2f5c5f869f2216ed947b7bd68aff4 199 Pfam PF01810 LysE type translocator 11 196 4.0E-22 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 4 28 - T 18-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 SUPERFAMILY SSF50129 2 95 4.4E-34 T 18-10-2018 IPR011032 GroES-like superfamily RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 SMART SM00883 3 94 2.6E-58 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 Gene3D G3DSA:2.30.33.40 1 96 5.2E-37 T 18-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 93 1.1E-34 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 Hamap MF_00580 10 kDa chaperonin [groS]. 3 95 26.928 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 PRINTS PR00297 10kDa chaperonin signature 60 72 5.6E-33 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 PRINTS PR00297 10kDa chaperonin signature 4 19 5.6E-33 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 PRINTS PR00297 10kDa chaperonin signature 26 47 5.6E-33 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_04155 d21e07e965ef486c6661b05e089f46e0 96 PRINTS PR00297 10kDa chaperonin signature 81 94 5.6E-33 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_13905 b74b427700424017a73bbd822d564fa4 286 Pfam PF05726 Pirin C-terminal cupin domain 182 285 3.5E-24 T 18-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 RU84_13905 b74b427700424017a73bbd822d564fa4 286 PIRSF PIRSF006232 4 286 3.8E-78 T 18-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RU84_13905 b74b427700424017a73bbd822d564fa4 286 Gene3D G3DSA:2.60.120.10 149 254 9.6E-76 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_13905 b74b427700424017a73bbd822d564fa4 286 Pfam PF02678 Pirin 25 127 4.8E-30 T 18-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RU84_13905 b74b427700424017a73bbd822d564fa4 286 SUPERFAMILY SSF51182 22 284 3.15E-71 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_13905 b74b427700424017a73bbd822d564fa4 286 Gene3D G3DSA:2.60.120.10 33 280 9.6E-76 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_11155 46160a09ee84b44730c2175b0516d0bf 368 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 155 268 1.6E-17 T 18-10-2018 IPR006528 Phage head morphogenesis domain RU84_11155 46160a09ee84b44730c2175b0516d0bf 368 Pfam PF04233 Phage Mu protein F like protein 153 264 1.2E-10 T 18-10-2018 IPR006528 Phage head morphogenesis domain RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 SUPERFAMILY SSF47928 3 106 2.09E-25 T 18-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 1.9E-53 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 2.8E-43 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 Gene3D G3DSA:1.10.520.20 2 107 3.2E-30 T 18-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 138 157 - T 18-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 2.1E-24 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 2.1E-24 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 2.1E-24 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 2.1E-24 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 2.1E-24 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17560 64716e9b4e7e5c1ee5fcf180e550f0f2 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 19.016 T 18-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_03515 39055f436c2b8c0eb628153e2ea99ad4 411 SUPERFAMILY SSF53686 10 360 1.96E-93 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_03515 39055f436c2b8c0eb628153e2ea99ad4 411 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 30 407 6.6E-135 T 18-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RU84_03515 39055f436c2b8c0eb628153e2ea99ad4 411 Gene3D G3DSA:3.30.70.260 331 410 4.6E-6 T 18-10-2018 RU84_03515 39055f436c2b8c0eb628153e2ea99ad4 411 Gene3D G3DSA:3.40.50.1100 59 155 5.0E-115 T 18-10-2018 RU84_03515 39055f436c2b8c0eb628153e2ea99ad4 411 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 311 2.0E-77 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_03515 39055f436c2b8c0eb628153e2ea99ad4 411 Gene3D G3DSA:3.40.50.1100 16 316 5.0E-115 T 18-10-2018 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 8 266 2.3E-113 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 100 2.2E-44 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 267 38.446 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 Gene3D G3DSA:3.90.226.10 1 267 2.8E-93 T 18-10-2018 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 105 118 2.0E-39 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 86 102 2.0E-39 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 40 51 2.0E-39 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 149 158 2.0E-39 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 65 83 2.0E-39 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 121 134 2.0E-39 T 18-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_15250 f176344fd7fa5cf70b22fe7295916850 273 SUPERFAMILY SSF52096 8 265 4.55E-83 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 SUPERFAMILY SSF46955 3 107 3.08E-28 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 SMART SM00422 3 72 1.2E-28 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 Pfam PF13411 MerR HTH family regulatory protein 4 70 1.8E-18 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 Pfam PF07739 TipAS antibiotic-recognition domain 149 229 3.2E-8 T 18-10-2018 IPR012925 TipAS antibiotic-recognition domain RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 5.3E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 5.3E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10980 6e14bb471a6a8c9de9b062e31da657ea 342 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 5.3E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.1E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.1E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.1E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.1E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 1.1E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 2.0E-13 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 2.0E-13 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 2.0E-13 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 SUPERFAMILY SSF51735 3 247 2.72E-71 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 Gene3D G3DSA:3.40.50.720 2 251 4.9E-69 T 18-10-2018 RU84_10480 7f4e95a081dcf3f3a89f154530eec59d 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 247 3.8E-54 T 18-10-2018 RU84_07090 8b226f0e0e856390fc26248c95dd6949 239 Pfam PF02308 MgtC family 21 141 1.3E-35 T 18-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RU84_07090 8b226f0e0e856390fc26248c95dd6949 239 PRINTS PR01837 MgtC/SapB protein signature 24 43 1.6E-41 T 18-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RU84_07090 8b226f0e0e856390fc26248c95dd6949 239 PRINTS PR01837 MgtC/SapB protein signature 96 120 1.6E-41 T 18-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RU84_07090 8b226f0e0e856390fc26248c95dd6949 239 PRINTS PR01837 MgtC/SapB protein signature 69 91 1.6E-41 T 18-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RU84_07090 8b226f0e0e856390fc26248c95dd6949 239 PRINTS PR01837 MgtC/SapB protein signature 43 61 1.6E-41 T 18-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RU84_02475 f6360ddffd706be4bab3fe4b944c19cf 217 Gene3D G3DSA:3.40.30.10 11 203 1.4E-59 T 18-10-2018 RU84_02475 f6360ddffd706be4bab3fe4b944c19cf 217 Gene3D G3DSA:1.20.1050.10 87 195 1.4E-59 T 18-10-2018 RU84_02475 f6360ddffd706be4bab3fe4b944c19cf 217 Pfam PF02798 Glutathione S-transferase, N-terminal domain 11 78 4.5E-12 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_02475 f6360ddffd706be4bab3fe4b944c19cf 217 SUPERFAMILY SSF47616 90 207 1.17E-16 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_02475 f6360ddffd706be4bab3fe4b944c19cf 217 SUPERFAMILY SSF52833 6 87 2.16E-14 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_15810 5ab829adb5b4b9f144b58822bb5840ef 138 Pfam PF00581 Rhodanese-like domain 47 126 6.6E-12 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_15810 5ab829adb5b4b9f144b58822bb5840ef 138 Gene3D G3DSA:3.40.250.10 37 136 1.8E-22 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_15810 5ab829adb5b4b9f144b58822bb5840ef 138 SMART SM00450 37 130 1.5E-14 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_15810 5ab829adb5b4b9f144b58822bb5840ef 138 SUPERFAMILY SSF52821 16 134 1.57E-25 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_11785 ba82c935c1e28fd13b7f1cd4765a38d8 487 Gene3D G3DSA:1.20.1740.10 26 485 7.0E-62 T 18-10-2018 RU84_11785 ba82c935c1e28fd13b7f1cd4765a38d8 487 Pfam PF00324 Amino acid permease 36 473 5.3E-102 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_11785 ba82c935c1e28fd13b7f1cd4765a38d8 487 PIRSF PIRSF006060 16 485 1.7E-67 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 SUPERFAMILY SSF50129 3 140 3.21E-27 T 18-10-2018 IPR011032 GroES-like superfamily RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 Gene3D G3DSA:3.40.50.720 123 300 1.9E-116 T 18-10-2018 RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 Gene3D G3DSA:3.90.180.10 20 328 1.9E-116 T 18-10-2018 RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 SUPERFAMILY SSF51735 120 296 2.77E-48 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 Pfam PF00107 Zinc-binding dehydrogenase 154 285 8.5E-25 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 SMART SM00829 14 328 1.6E-6 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_05265 47cccd9ff0e3b15401661bf1e181e34a 333 Pfam PF16884 N-terminal domain of oxidoreductase 5 108 4.1E-25 T 18-10-2018 RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 PRINTS PR01438 Universal stress protein signature 240 252 2.4E-8 T 18-10-2018 IPR006015 Universal stress protein A RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 PRINTS PR01438 Universal stress protein signature 1 11 2.4E-8 T 18-10-2018 IPR006015 Universal stress protein A RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 PRINTS PR01438 Universal stress protein signature 258 280 2.4E-8 T 18-10-2018 IPR006015 Universal stress protein A RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 SUPERFAMILY SSF52402 166 280 2.09E-19 T 18-10-2018 RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 Pfam PF00582 Universal stress protein family 213 280 1.1E-10 T 18-10-2018 IPR006016 UspA RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 Pfam PF00582 Universal stress protein family 2 156 1.4E-5 T 18-10-2018 IPR006016 UspA RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 Gene3D G3DSA:3.40.50.12370 2 280 1.1E-46 T 18-10-2018 RU84_11055 86ba4a720299cecbe39504d48fcf19aa 280 SUPERFAMILY SSF52402 1 157 1.59E-11 T 18-10-2018 RU84_06535 b6da6db91a1327b6209be819192e12e3 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.648 T 18-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_06535 b6da6db91a1327b6209be819192e12e3 148 Gene3D G3DSA:3.40.5.10 1 50 1.0E-21 T 18-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06535 b6da6db91a1327b6209be819192e12e3 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 2.5E-26 T 18-10-2018 IPR020069 Ribosomal protein L9, C-terminal RU84_06535 b6da6db91a1327b6209be819192e12e3 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 148 5.6E-49 T 18-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_06535 b6da6db91a1327b6209be819192e12e3 148 SUPERFAMILY SSF55658 1 57 4.53E-18 T 18-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal RU84_06535 b6da6db91a1327b6209be819192e12e3 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 46 7.8E-21 T 18-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06535 b6da6db91a1327b6209be819192e12e3 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 18-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06535 b6da6db91a1327b6209be819192e12e3 148 Gene3D G3DSA:3.10.430.100 61 148 2.8E-29 T 18-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RU84_06535 b6da6db91a1327b6209be819192e12e3 148 SUPERFAMILY SSF55653 60 148 2.62E-26 T 18-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily RU84_14780 45b4a72cc2b5cb189829f4279a1274f5 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 146 162 - T 18-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14780 45b4a72cc2b5cb189829f4279a1274f5 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 35 179 1.7E-68 T 18-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14780 45b4a72cc2b5cb189829f4279a1274f5 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 25 179 43.003 T 18-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14780 45b4a72cc2b5cb189829f4279a1274f5 225 Gene3D G3DSA:3.40.50.12280 19 190 2.7E-70 T 18-10-2018 RU84_14780 45b4a72cc2b5cb189829f4279a1274f5 225 SUPERFAMILY SSF56770 42 182 7.72E-64 T 18-10-2018 RU84_14780 45b4a72cc2b5cb189829f4279a1274f5 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 88 172 4.4E-22 T 18-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_09775 a49bf1684315c6da10fae34a2977dd9d 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 114 7.4E-24 T 18-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RU84_09775 a49bf1684315c6da10fae34a2977dd9d 225 SUPERFAMILY SSF161098 16 205 2.49E-39 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09775 a49bf1684315c6da10fae34a2977dd9d 225 Gene3D G3DSA:1.10.3720.10 7 222 1.5E-48 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09775 a49bf1684315c6da10fae34a2977dd9d 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 221 1.4E-18 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 Gene3D G3DSA:3.40.50.7700 2 169 8.4E-73 T 18-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 165 1.6E-64 T 18-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 SMART SM01001 10 161 3.1E-102 T 18-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 PIRSF PIRSF001338 7 167 1.1E-65 T 18-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 Pfam PF00731 AIR carboxylase 12 159 4.7E-63 T 18-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 SUPERFAMILY SSF52255 11 166 7.33E-66 T 18-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 RU84_18310 551fc4a3e8315468e26d7fa6e0fef91b 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 165 32.101 T 18-10-2018 IPR033747 Class I PurE RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 SUPERFAMILY SSF69255 438 532 3.92E-24 T 18-10-2018 RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Gene3D G3DSA:3.55.50.10 111 221 1.3E-42 T 18-10-2018 RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 561 668 2.6E-36 T 18-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 850 997 1.8E-42 T 18-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Gene3D G3DSA:2.40.50.230 429 538 3.0E-31 T 18-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 588 1.8E-55 T 18-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 SUPERFAMILY SSF69279 24 215 3.17E-39 T 18-10-2018 RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Gene3D G3DSA:3.30.1920.30 254 336 1.3E-42 T 18-10-2018 RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 25 586 1.1E-70 T 18-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Gene3D G3DSA:2.30.110.50 32 377 1.3E-42 T 18-10-2018 RU84_00575 4addb4aed8936b3b62c947e2c9edaa27 1101 Pfam PF05954 Phage late control gene D protein (GPD) 44 384 5.2E-61 T 18-10-2018 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 Gene3D G3DSA:1.20.1250.20 255 461 8.2E-17 T 18-10-2018 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 1.9E-7 T 18-10-2018 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 1.9E-7 T 18-10-2018 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 1.9E-7 T 18-10-2018 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 1.9E-7 T 18-10-2018 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 SUPERFAMILY SSF103473 8 460 1.02E-64 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 422 1.0E-79 T 18-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 Pfam PF07690 Major Facilitator Superfamily 22 412 1.7E-49 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_17375 568bc93755d0463dd13056ac9a0c5d50 463 Gene3D G3DSA:1.20.1720.10 16 221 7.5E-46 T 18-10-2018 RU84_15400 a18899e8ef2e13023f37079fa039965e 463 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 42 450 5.9E-98 T 18-10-2018 RU84_15400 a18899e8ef2e13023f37079fa039965e 463 Gene3D G3DSA:3.40.1350.30 144 287 3.7E-111 T 18-10-2018 RU84_15400 a18899e8ef2e13023f37079fa039965e 463 SUPERFAMILY SSF50249 8 75 1.43E-8 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_15400 a18899e8ef2e13023f37079fa039965e 463 Gene3D G3DSA:2.40.50.140 2 96 3.9E-19 T 18-10-2018 RU84_15400 a18899e8ef2e13023f37079fa039965e 463 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 389 419 - T 18-10-2018 IPR030390 RNA methyltransferase TrmA, active site RU84_15400 a18899e8ef2e13023f37079fa039965e 463 Gene3D G3DSA:3.40.50.150 97 452 3.7E-111 T 18-10-2018 RU84_15400 a18899e8ef2e13023f37079fa039965e 463 SUPERFAMILY SSF53335 85 457 1.4E-82 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_15400 a18899e8ef2e13023f37079fa039965e 463 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 108 457 6.1E-31 T 18-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RU84_15400 a18899e8ef2e13023f37079fa039965e 463 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 16 458 68.918 T 18-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Pfam PF12002 MgsA AAA+ ATPase C terminal 251 410 3.7E-67 T 18-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 SUPERFAMILY SSF52540 4 219 1.77E-44 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 SUPERFAMILY SSF48019 236 418 1.76E-72 T 18-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 SMART SM00382 41 153 7.6E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Gene3D G3DSA:1.10.8.60 153 223 5.7E-7 T 18-10-2018 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Gene3D G3DSA:1.20.272.10 224 328 4.8E-45 T 18-10-2018 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Gene3D G3DSA:1.10.3710.10 329 421 2.9E-30 T 18-10-2018 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 45 147 2.3E-15 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Gene3D G3DSA:3.40.50.300 1 152 1.9E-43 T 18-10-2018 RU84_00280 72c7858d87dfeee4a8ed78e58848ab33 421 Pfam PF16193 AAA C-terminal domain 181 250 1.5E-22 T 18-10-2018 IPR032423 AAA C-terminal domain RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 SUPERFAMILY SSF51905 4 447 4.82E-67 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 Gene3D G3DSA:1.20.58.100 425 540 7.4E-44 T 18-10-2018 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 523 9.0E-14 T 18-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 Gene3D G3DSA:3.90.700.10 248 358 4.5E-148 T 18-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 Gene3D G3DSA:3.50.50.60 13 404 4.5E-148 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 9.0E-8 T 18-10-2018 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 9.0E-8 T 18-10-2018 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 SUPERFAMILY SSF56425 238 353 1.15E-40 T 18-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 11 520 2.6E-190 T 18-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 PIRSF PIRSF000171 2 286 2.7E-18 T 18-10-2018 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 PIRSF PIRSF000171 337 535 9.8E-16 T 18-10-2018 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 SUPERFAMILY SSF46977 426 525 6.93E-32 T 18-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_04715 54ee4ec8cee134124b4f370dc09dc32e 547 Pfam PF00890 FAD binding domain 13 392 4.7E-91 T 18-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 SUPERFAMILY SSF55008 13 75 1.57E-18 T 18-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Pfam PF00403 Heavy-metal-associated domain 14 74 6.5E-14 T 18-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Pfam PF00403 Heavy-metal-associated domain 83 142 3.0E-17 T 18-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 SUPERFAMILY SSF81665 272 794 1.7E-12 T 18-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Pfam PF00122 E1-E2 ATPase 306 485 6.2E-57 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Gene3D G3DSA:3.40.1110.10 518 638 2.0E-92 T 18-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00943 Copper-transporting ATPase signature 428 442 5.3E-14 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00943 Copper-transporting ATPase signature 295 313 5.3E-14 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00943 Copper-transporting ATPase signature 683 700 5.3E-14 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00943 Copper-transporting ATPase signature 223 242 5.3E-14 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00943 Copper-transporting ATPase signature 275 294 5.3E-14 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00943 Copper-transporting ATPase signature 123 143 5.3E-14 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 81 143 1.4E-12 T 18-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 13 75 3.5E-12 T 18-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 SUPERFAMILY SSF56784 505 813 1.04E-62 T 18-10-2018 IPR036412 HAD-like superfamily RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 ProSitePatterns PS01047 Heavy-metal-associated domain. 85 114 - T 18-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 SUPERFAMILY SSF55008 80 145 4.71E-22 T 18-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 ProSitePatterns PS01047 Heavy-metal-associated domain. 17 46 - T 18-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Pfam PF00702 haloacid dehalogenase-like hydrolase 505 720 8.6E-45 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 220 816 6.0E-181 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Gene3D G3DSA:3.40.50.1000 488 758 2.0E-92 T 18-10-2018 IPR023214 HAD superfamily RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 631 642 1.2E-29 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 507 521 1.2E-29 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 355 369 1.2E-29 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 706 725 1.2E-29 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 653 663 1.2E-29 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 729 741 1.2E-29 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Gene3D G3DSA:2.70.150.20 298 410 4.1E-39 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Gene3D G3DSA:3.30.70.100 79 153 1.1E-23 T 18-10-2018 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 509 515 - T 18-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 238 815 1.5E-189 T 18-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 SUPERFAMILY SSF81653 307 405 7.06E-29 T 18-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 277 784 7.7E-94 T 18-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RU84_11255 1c75dffe717fbf417f9a4479fa94ac94 823 Gene3D G3DSA:3.30.70.100 12 78 1.2E-20 T 18-10-2018 RU84_17890 ea5aa09e8cb9984891d214e8f0d6c2af 166 Gene3D G3DSA:3.90.79.10 5 152 5.7E-23 T 18-10-2018 RU84_17890 ea5aa09e8cb9984891d214e8f0d6c2af 166 SUPERFAMILY SSF55811 13 149 3.38E-19 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_17890 ea5aa09e8cb9984891d214e8f0d6c2af 166 Pfam PF00293 NUDIX domain 19 142 1.1E-17 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_17890 ea5aa09e8cb9984891d214e8f0d6c2af 166 PRINTS PR00502 NUDIX hydrolase family signature 63 78 9.9E-6 T 18-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RU84_17890 ea5aa09e8cb9984891d214e8f0d6c2af 166 PRINTS PR00502 NUDIX hydrolase family signature 49 63 9.9E-6 T 18-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RU84_17890 ea5aa09e8cb9984891d214e8f0d6c2af 166 ProSitePatterns PS00893 Nudix box signature. 54 75 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 SUPERFAMILY SSF54523 87 191 1.05E-25 T 18-10-2018 RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 59 80 9.8E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 59 79 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 Gene3D G3DSA:3.30.700.10 83 191 1.7E-30 T 18-10-2018 RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 59 190 2.2E-45 T 18-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 PRINTS PR00813 Bacterial general secretion pathway protein G signature 96 114 1.1E-16 T 18-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 PRINTS PR00813 Bacterial general secretion pathway protein G signature 60 85 1.1E-16 T 18-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 Pfam PF08334 Type II secretion system (T2SS), protein G 83 190 6.2E-34 T 18-10-2018 IPR013545 Type II secretion system protein G RU84_16555 fb6dca80a1cac16f8dcdf96b3f3074d7 193 Pfam PF07963 Prokaryotic N-terminal methylation motif 55 80 4.9E-9 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_10240 b2004ef4011850c835f8b83816721b09 286 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 50 265 5.8E-51 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_10240 b2004ef4011850c835f8b83816721b09 286 SMART SM00062 49 271 4.0E-70 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_10240 b2004ef4011850c835f8b83816721b09 286 SUPERFAMILY SSF53850 9 265 2.98E-60 T 18-10-2018 RU84_10240 b2004ef4011850c835f8b83816721b09 286 Gene3D G3DSA:3.40.190.10 139 229 9.5E-76 T 18-10-2018 RU84_10240 b2004ef4011850c835f8b83816721b09 286 Gene3D G3DSA:3.40.190.10 44 264 9.5E-76 T 18-10-2018 RU84_08230 7c638c32800189638f33df4f3dfaff25 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.5E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08230 7c638c32800189638f33df4f3dfaff25 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.5E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08230 7c638c32800189638f33df4f3dfaff25 189 Gene3D G3DSA:1.10.357.10 1 189 9.7E-61 T 18-10-2018 RU84_08230 7c638c32800189638f33df4f3dfaff25 189 SUPERFAMILY SSF48498 83 187 5.43E-5 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_08230 7c638c32800189638f33df4f3dfaff25 189 SUPERFAMILY SSF46689 3 78 8.48E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08230 7c638c32800189638f33df4f3dfaff25 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 2.9E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08230 7c638c32800189638f33df4f3dfaff25 189 Pfam PF16295 Tetracycline repressor, C-terminal all-alpha domain 65 189 1.8E-6 T 18-10-2018 IPR032551 HTH-type transcriptional repressor, C-terminal RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 612 40.354 T 18-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 SUPERFAMILY SSF53697 244 612 1.02E-107 T 18-10-2018 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Gene3D G3DSA:3.60.20.10 2 238 2.6E-77 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Gene3D G3DSA:3.40.50.10490 450 597 1.1E-143 T 18-10-2018 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 SUPERFAMILY SSF56235 2 222 5.4E-72 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Gene3D G3DSA:3.40.50.10490 247 611 1.1E-143 T 18-10-2018 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Pfam PF13522 Glutamine amidotransferase domain 62 180 8.8E-22 T 18-10-2018 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Pfam PF01380 SIS domain 288 420 1.1E-30 T 18-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 Pfam PF01380 SIS domain 466 594 1.4E-28 T 18-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RU84_00425 23bc927fe2b484bab3f8408c9b4e59c9 612 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 612 9.9E-254 T 18-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Pfam PF00390 Malic enzyme, N-terminal domain 21 113 4.3E-20 T 18-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Pfam PF00390 Malic enzyme, N-terminal domain 115 152 2.4E-6 T 18-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 SMART SM00919 164 397 2.4E-127 T 18-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 SUPERFAMILY SSF53223 11 162 3.09E-52 T 18-10-2018 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Gene3D G3DSA:3.40.50.10950 442 748 5.1E-94 T 18-10-2018 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Pfam PF03949 Malic enzyme, NAD binding domain 166 357 2.3E-22 T 18-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 SMART SM01274 19 152 2.7E-80 T 18-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 SUPERFAMILY SSF51735 164 449 2.25E-86 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Gene3D G3DSA:3.40.50.10380 1 161 6.4E-70 T 18-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 SUPERFAMILY SSF53659 426 751 2.67E-89 T 18-10-2018 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 PIRSF PIRSF036684 1 756 0.0 T 18-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Gene3D G3DSA:3.40.50.10750 569 724 5.1E-94 T 18-10-2018 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Pfam PF01515 Phosphate acetyl/butaryl transferase 426 748 4.0E-95 T 18-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 RU84_05555 8b792dfaf4504d7b8ceb4e77a4f8e948 756 Gene3D G3DSA:3.40.50.720 162 441 6.2E-82 T 18-10-2018 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 Gene3D G3DSA:1.20.140.10 253 406 1.8E-39 T 18-10-2018 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 SUPERFAMILY SSF47203 251 400 1.35E-40 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 252 397 7.0E-27 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 143 239 5.0E-21 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 Gene3D G3DSA:1.10.540.10 9 141 1.5E-42 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 Gene3D G3DSA:2.40.110.10 142 251 2.6E-37 T 18-10-2018 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 357 376 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 27 139 1.5E-34 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_14945 7ac1f3fc8d824e327a237afc5709cd98 406 SUPERFAMILY SSF56645 14 250 1.96E-78 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_07330 21ae984d8c1f5b37b985b13c7c45787b 161 Pfam PF02391 MoaE protein 7 119 4.8E-34 T 18-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RU84_07330 21ae984d8c1f5b37b985b13c7c45787b 161 Gene3D G3DSA:3.90.1170.40 1 136 2.1E-42 T 18-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RU84_07330 21ae984d8c1f5b37b985b13c7c45787b 161 SUPERFAMILY SSF54690 7 139 3.79E-39 T 18-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 RU84_17525 f06584f49c238fee4c4fc665d26cb1c9 254 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 248 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_17525 f06584f49c238fee4c4fc665d26cb1c9 254 SUPERFAMILY SSF46689 207 254 2.37E-8 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_17525 f06584f49c238fee4c4fc665d26cb1c9 254 Pfam PF12833 Helix-turn-helix domain 178 253 2.1E-16 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_17525 f06584f49c238fee4c4fc665d26cb1c9 254 Gene3D G3DSA:1.10.10.60 156 254 2.4E-18 T 18-10-2018 RU84_17525 f06584f49c238fee4c4fc665d26cb1c9 254 SUPERFAMILY SSF51182 13 173 3.02E-7 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_17525 f06584f49c238fee4c4fc665d26cb1c9 254 SMART SM00342 170 252 8.4E-18 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 Pfam PF00226 DnaJ domain 4 65 1.5E-22 T 18-10-2018 IPR001623 DnaJ domain RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 SUPERFAMILY SSF49493 131 217 5.76E-14 T 18-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 SMART SM00271 3 60 6.2E-27 T 18-10-2018 IPR001623 DnaJ domain RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 Pfam PF01556 DnaJ C terminal domain 139 291 2.2E-31 T 18-10-2018 IPR002939 Chaperone DnaJ, C-terminal RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 PRINTS PR00625 DnaJ domain signature 6 24 7.2E-20 T 18-10-2018 IPR001623 DnaJ domain RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 PRINTS PR00625 DnaJ domain signature 60 79 7.2E-20 T 18-10-2018 IPR001623 DnaJ domain RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 PRINTS PR00625 DnaJ domain signature 24 39 7.2E-20 T 18-10-2018 IPR001623 DnaJ domain RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 PRINTS PR00625 DnaJ domain signature 40 60 7.2E-20 T 18-10-2018 IPR001623 DnaJ domain RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 SUPERFAMILY SSF46565 3 99 3.14E-29 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 Gene3D G3DSA:1.10.287.110 1 129 8.6E-31 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 Gene3D G3DSA:2.60.260.20 216 316 6.8E-19 T 18-10-2018 RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 SUPERFAMILY SSF49493 221 302 3.66E-15 T 18-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RU84_16585 583e483be2f0fb42ceadfa627ccbd98f 318 Gene3D G3DSA:2.60.260.20 132 214 6.1E-20 T 18-10-2018 RU84_01530 c1cddbd708d2c4e96c8ebffb38157d55 127 SUPERFAMILY SSF55298 1 126 1.73E-44 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_01530 c1cddbd708d2c4e96c8ebffb38157d55 127 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 7.5E-48 T 18-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 RU84_01530 c1cddbd708d2c4e96c8ebffb38157d55 127 Pfam PF01042 Endoribonuclease L-PSP 8 124 1.6E-37 T 18-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RU84_01530 c1cddbd708d2c4e96c8ebffb38157d55 127 Gene3D G3DSA:3.30.1330.40 3 126 1.9E-50 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_01530 c1cddbd708d2c4e96c8ebffb38157d55 127 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 18-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 RU84_04225 67a8e2e1e12a7195d0cd0f9783084dad 176 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 49 162 6.9E-15 T 18-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 RU84_04225 67a8e2e1e12a7195d0cd0f9783084dad 176 SUPERFAMILY SSF54427 35 171 2.93E-29 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_04225 67a8e2e1e12a7195d0cd0f9783084dad 176 Pfam PF14534 Domain of unknown function (DUF4440) 47 155 2.9E-9 T 18-10-2018 IPR027843 Domain of unknown function DUF4440 RU84_04225 67a8e2e1e12a7195d0cd0f9783084dad 176 Gene3D G3DSA:3.10.450.50 42 171 9.9E-25 T 18-10-2018 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 SMART SM00344 6 115 6.7E-25 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 Pfam PF13404 AsnC-type helix-turn-helix domain 6 47 1.0E-14 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 1.7E-11 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 Gene3D G3DSA:3.30.70.920 60 154 2.6E-12 T 18-10-2018 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 Gene3D G3DSA:1.10.10.10 1 59 3.0E-16 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 SUPERFAMILY SSF46785 5 65 8.44E-14 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 7.6E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 7.6E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 7.6E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11025 5b5942edb220ecf5c815d2b2740bf54f 155 SUPERFAMILY SSF54909 68 150 3.62E-11 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.4E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.4E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.4E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 Pfam PF00106 short chain dehydrogenase 8 199 2.8E-59 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 Gene3D G3DSA:3.40.50.720 7 260 3.5E-88 T 18-10-2018 RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 TIGRFAM TIGR02415 23BDH: acetoin reductases 8 261 9.7E-109 T 18-10-2018 IPR014007 Acetoin reductase GO:0019152|GO:0045150|GO:0055114 KEGG: 00650+1.1.1.304|MetaCyc: PWY-6389 RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 SUPERFAMILY SSF51735 6 259 1.27E-79 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 6.2E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 6.2E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 6.2E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 6.2E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 6.2E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08780 84dce63398f92c928f0f7c6d0ba94b5a 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 6.2E-41 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82714 705 796 8.24E-11 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:3.30.2090.10 178 268 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:1.20.1640.10 505 1013 0.0 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82693 40 134 2.88E-23 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82693 558 650 6.98E-13 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:3.30.70.1430 559 654 0.0 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:3.30.2090.10 704 799 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:3.30.70.1440 655 856 0.0 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Pfam PF00873 AcrB/AcrD/AcrF family 4 1016 8.3E-272 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:3.30.70.1430 40 807 0.0 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82866 289 489 1.14E-46 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 1.7E-63 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 Gene3D G3DSA:1.20.1640.10 10 504 0.0 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82693 136 323 3.53E-22 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82866 797 1018 3.66E-49 T 18-10-2018 RU84_03360 fe04a49c570a9698deafcddd24e6e427 1032 SUPERFAMILY SSF82714 182 264 4.05E-15 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 Pfam PF00970 Oxidoreductase FAD-binding domain 20 94 1.9E-8 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 3.2E-6 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 3.2E-6 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 53 60 3.2E-6 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 4.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 140 149 4.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 4.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 34 46 4.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 SUPERFAMILY SSF63380 7 101 5.91E-25 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 Gene3D G3DSA:3.40.50.80 99 253 1.0E-38 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 SUPERFAMILY SSF52343 109 251 4.71E-32 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 Pfam PF00175 Oxidoreductase NAD-binding domain 116 229 1.4E-13 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_14705 9416d99dec23fe22e7b3c8d3bebf12cb 253 Gene3D G3DSA:2.40.30.10 1 97 9.2E-30 T 18-10-2018 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 SUPERFAMILY SSF50249 7 83 2.23E-32 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 81 25.231 T 18-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 Gene3D G3DSA:2.40.50.140 2 84 1.6E-35 T 18-10-2018 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 Pfam PF00366 Ribosomal protein S17 11 78 4.1E-32 T 18-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 ProSitePatterns PS00056 Ribosomal protein S17 signature. 57 69 - T 18-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 77 3.0E-34 T 18-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 77 1.3E-36 T 18-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 PRINTS PR00973 Ribosomal protein S17 family signature 67 74 3.1E-12 T 18-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 PRINTS PR00973 Ribosomal protein S17 family signature 25 48 3.1E-12 T 18-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02055 d02236d0fd2deac33c248ed93a52dd31 85 PRINTS PR00973 Ribosomal protein S17 family signature 57 67 3.1E-12 T 18-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_03285 777d2000de0e983343968886e3cd8a83 117 Gene3D G3DSA:3.10.490.10 1 117 2.8E-19 T 18-10-2018 RU84_03285 777d2000de0e983343968886e3cd8a83 117 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 4 108 4.5E-13 T 18-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like RU84_03285 777d2000de0e983343968886e3cd8a83 117 SUPERFAMILY SSF110857 1 109 2.35E-17 T 18-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily RU84_06560 18ca7ee088924c49d656faa65c8e12cc 206 Gene3D G3DSA:1.20.120.80 18 206 1.7E-52 T 18-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06560 18ca7ee088924c49d656faa65c8e12cc 206 SUPERFAMILY SSF81452 9 204 3.53E-56 T 18-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06560 18ca7ee088924c49d656faa65c8e12cc 206 Pfam PF00510 Cytochrome c oxidase subunit III 12 204 1.9E-14 T 18-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06560 18ca7ee088924c49d656faa65c8e12cc 206 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 24 206 5.0E-80 T 18-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 RU84_08590 df31581fef36793c39c97e2dad777924 361 Gene3D G3DSA:1.20.1480.50 58 139 7.8E-6 T 18-10-2018 RU84_08590 df31581fef36793c39c97e2dad777924 361 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 248 353 6.9E-20 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_08590 df31581fef36793c39c97e2dad777924 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 283 297 3.6E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_08590 df31581fef36793c39c97e2dad777924 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 318 336 3.6E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_08590 df31581fef36793c39c97e2dad777924 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 301 311 3.6E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_08590 df31581fef36793c39c97e2dad777924 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 354 3.6E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_08590 df31581fef36793c39c97e2dad777924 361 SMART SM00387 247 357 9.7E-31 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_08590 df31581fef36793c39c97e2dad777924 361 SMART SM00304 84 138 1.7E-5 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_08590 df31581fef36793c39c97e2dad777924 361 Gene3D G3DSA:1.10.287.130 140 204 2.0E-9 T 18-10-2018 RU84_08590 df31581fef36793c39c97e2dad777924 361 Pfam PF00512 His Kinase A (phospho-acceptor) domain 145 202 1.7E-8 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_08590 df31581fef36793c39c97e2dad777924 361 SMART SM00388 139 203 7.7E-9 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_08590 df31581fef36793c39c97e2dad777924 361 SUPERFAMILY SSF158472 86 134 3.79E-5 T 18-10-2018 RU84_08590 df31581fef36793c39c97e2dad777924 361 Gene3D G3DSA:3.30.565.10 205 359 3.9E-37 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_08590 df31581fef36793c39c97e2dad777924 361 SUPERFAMILY SSF47384 122 204 1.49E-11 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_08590 df31581fef36793c39c97e2dad777924 361 SUPERFAMILY SSF55874 192 353 4.19E-35 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_15085 11bf080121b191e57b9db0cddd84c426 556 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 23 555 6.4E-72 T 18-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) RU84_15085 11bf080121b191e57b9db0cddd84c426 556 SUPERFAMILY SSF56935 33 554 2.93E-53 T 18-10-2018 RU84_15085 11bf080121b191e57b9db0cddd84c426 556 Gene3D G3DSA:2.40.160.60 115 556 3.3E-57 T 18-10-2018 RU84_15510 fd2541cc6b721abe0ac9cf3b60925686 346 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 6 334 4.6E-128 T 18-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RU84_15510 fd2541cc6b721abe0ac9cf3b60925686 346 PIRSF PIRSF005508 1 346 1.1E-132 T 18-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RU84_15510 fd2541cc6b721abe0ac9cf3b60925686 346 Gene3D G3DSA:1.20.1530.20 1 340 8.9E-25 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_15510 fd2541cc6b721abe0ac9cf3b60925686 346 Pfam PF01758 Sodium Bile acid symporter family 51 247 1.0E-60 T 18-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 122 133 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 Pfam PF04060 Putative Fe-S cluster 15 47 1.5E-9 T 18-10-2018 IPR007202 4Fe-4S domain GO:0051536 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 5 155 3.5E-56 T 18-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 Pfam PF14697 4Fe-4S dicluster domain 85 138 1.5E-15 T 18-10-2018 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 Gene3D G3DSA:3.20.20.20 7 65 2.9E-7 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 SUPERFAMILY SSF54862 10 144 1.13E-25 T 18-10-2018 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 Gene3D G3DSA:3.30.70.20 66 160 1.0E-19 T 18-10-2018 RU84_12630 3fe330626e3c0e754e57c727b133ca36 263 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 92 103 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 Pfam PF02814 UreE urease accessory protein, N-terminal domain 6 63 6.8E-12 T 18-10-2018 IPR004029 UreE urease accessory, N-terminal RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 Gene3D G3DSA:3.30.70.790 73 144 3.1E-28 T 18-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 SUPERFAMILY SSF69287 1 72 8.24E-15 T 18-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 SUPERFAMILY SSF69737 72 139 1.24E-20 T 18-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 Pfam PF05194 UreE urease accessory protein, C-terminal domain 73 159 7.3E-28 T 18-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 Gene3D G3DSA:2.60.260.20 1 71 3.8E-16 T 18-10-2018 RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 PIRSF PIRSF036402 2 159 2.6E-40 T 18-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 140 22.175 T 18-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 RU84_12680 727e8c169b341472f04ce9f031fc7dde 160 SMART SM00988 2 66 1.6E-14 T 18-10-2018 IPR004029 UreE urease accessory, N-terminal RU84_03890 1dd20e9e55e113189dbd1de854128306 628 SUPERFAMILY SSF88946 117 460 1.13E-93 T 18-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Pfam PF00140 Sigma-70 factor, region 1.2 100 130 2.2E-12 T 18-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 626 44.43 T 18-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Pfam PF04545 Sigma-70, region 4 561 614 5.4E-18 T 18-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 586 612 - T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Gene3D G3DSA:1.10.220.120 5 66 7.7E-26 T 18-10-2018 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Pfam PF04539 Sigma-70 region 3 472 547 1.0E-30 T 18-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Pfam PF04542 Sigma-70 region 2 393 462 1.8E-21 T 18-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 389 625 2.7E-122 T 18-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 PRINTS PR00046 Major sigma-70 factor signature 601 612 5.0E-31 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 PRINTS PR00046 Major sigma-70 factor signature 565 577 5.0E-31 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 PRINTS PR00046 Major sigma-70 factor signature 441 449 5.0E-31 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 PRINTS PR00046 Major sigma-70 factor signature 586 601 5.0E-31 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 PRINTS PR00046 Major sigma-70 factor signature 417 430 5.0E-31 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Pfam PF04546 Sigma-70, non-essential region 141 362 2.3E-53 T 18-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Pfam PF03979 Sigma-70 factor, region 1.1 8 83 5.4E-27 T 18-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 389 614 8.9E-38 T 18-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 SUPERFAMILY SSF88659 523 625 5.61E-27 T 18-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Gene3D G3DSA:1.10.10.10 466 542 7.9E-32 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03890 1dd20e9e55e113189dbd1de854128306 628 SUPERFAMILY SSF88659 466 539 1.57E-20 T 18-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RU84_03890 1dd20e9e55e113189dbd1de854128306 628 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 417 430 - T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Gene3D G3DSA:1.10.601.10 115 462 1.4E-131 T 18-10-2018 RU84_03890 1dd20e9e55e113189dbd1de854128306 628 Gene3D G3DSA:1.10.10.10 543 627 4.3E-36 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 PIRSF PIRSF000429 1 390 4.8E-112 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 Gene3D G3DSA:3.40.47.10 126 388 2.0E-140 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 SUPERFAMILY SSF53901 270 389 4.16E-39 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 9.2E-130 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 Pfam PF02803 Thiolase, C-terminal domain 269 389 2.1E-43 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 Pfam PF00108 Thiolase, N-terminal domain 4 261 1.2E-88 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 Gene3D G3DSA:3.40.47.10 5 274 2.0E-140 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08640 c6200bcfb4833f0ea936dc90cadbfc19 390 SUPERFAMILY SSF53901 4 268 4.01E-78 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_02930 ebff856cf3e1cbef2136fa9a80165ba0 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 3.1E-129 T 18-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 RU84_02930 ebff856cf3e1cbef2136fa9a80165ba0 308 Gene3D G3DSA:3.20.10.10 131 308 7.0E-53 T 18-10-2018 RU84_02930 ebff856cf3e1cbef2136fa9a80165ba0 308 SUPERFAMILY SSF56752 2 304 3.79E-102 T 18-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RU84_02930 ebff856cf3e1cbef2136fa9a80165ba0 308 Pfam PF01063 Amino-transferase class IV 36 268 6.2E-53 T 18-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RU84_02930 ebff856cf3e1cbef2136fa9a80165ba0 308 Gene3D G3DSA:3.30.470.10 2 130 2.5E-39 T 18-10-2018 RU84_04620 b16e51e5231e6b8166d6487c56599e65 210 Gene3D G3DSA:3.40.50.620 14 201 1.3E-52 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_04620 b16e51e5231e6b8166d6487c56599e65 210 Pfam PF01467 Cytidylyltransferase-like 22 77 1.2E-6 T 18-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RU84_04620 b16e51e5231e6b8166d6487c56599e65 210 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 22 81 2.5E-9 T 18-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RU84_04620 b16e51e5231e6b8166d6487c56599e65 210 SUPERFAMILY SSF52374 22 182 1.63E-22 T 18-10-2018 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 SUPERFAMILY SSF55874 279 445 2.1E-42 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 SUPERFAMILY SSF47384 213 291 2.35E-19 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Pfam PF11808 Domain of unknown function (DUF3329) 27 106 2.8E-14 T 18-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 SUPERFAMILY SSF55785 125 169 1.06E-5 T 18-10-2018 IPR035965 PAS domain superfamily RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Pfam PF13188 PAS domain 119 164 7.5E-6 T 18-10-2018 IPR000014 PAS domain RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 SMART SM00387 335 447 6.7E-35 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Gene3D G3DSA:1.10.287.130 223 290 1.6E-22 T 18-10-2018 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 SMART SM00388 224 290 3.1E-18 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Gene3D G3DSA:3.30.450.20 107 222 3.2E-8 T 18-10-2018 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 116 443 6.2E-124 T 18-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 446 1.6E-24 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 1.1E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 400 1.1E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 1.1E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.1E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 289 4.9E-17 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_00520 5629b1ef409b6365a0e1a157aeb56908 452 Gene3D G3DSA:3.30.565.10 292 449 1.3E-38 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 Gene3D G3DSA:2.60.120.10 16 97 7.5E-6 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 Pfam PF12833 Helix-turn-helix domain 176 254 4.1E-19 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 SUPERFAMILY SSF46689 210 256 3.72E-8 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 Pfam PF02311 AraC-like ligand binding domain 30 137 1.1E-5 T 18-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 Gene3D G3DSA:1.10.10.60 156 258 3.5E-19 T 18-10-2018 RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 SUPERFAMILY SSF51182 22 186 4.31E-13 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_08455 d5bf6748f107fd53c54bee6094b60b97 262 SMART SM00342 170 252 6.1E-18 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03325 c992c65f78506e9b6ed5d3421f04c6cb 236 Gene3D G3DSA:3.10.450.70 18 83 4.1E-12 T 18-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RU84_03325 c992c65f78506e9b6ed5d3421f04c6cb 236 SUPERFAMILY SSF54423 29 81 8.83E-14 T 18-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RU84_03325 c992c65f78506e9b6ed5d3421f04c6cb 236 SUPERFAMILY SSF52833 88 234 2.65E-33 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_03325 c992c65f78506e9b6ed5d3421f04c6cb 236 Gene3D G3DSA:3.40.30.10 98 235 1.8E-39 T 18-10-2018 RU84_03325 c992c65f78506e9b6ed5d3421f04c6cb 236 Pfam PF10411 Disulfide bond isomerase protein N-terminus 26 78 5.3E-17 T 18-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RU84_03325 c992c65f78506e9b6ed5d3421f04c6cb 236 Pfam PF13098 Thioredoxin-like domain 108 232 2.3E-30 T 18-10-2018 IPR012336 Thioredoxin-like fold RU84_07245 cbe3c3ffbecd4ca9e50275b9fcde2345 287 Pfam PF14518 Iron-containing redox enzyme 133 254 1.2E-7 T 18-10-2018 RU84_07245 cbe3c3ffbecd4ca9e50275b9fcde2345 287 Gene3D G3DSA:1.20.910.10 29 279 1.6E-24 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_07245 cbe3c3ffbecd4ca9e50275b9fcde2345 287 SUPERFAMILY SSF48613 33 273 1.33E-7 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_07245 cbe3c3ffbecd4ca9e50275b9fcde2345 287 SMART SM01236 111 223 1.6E-13 T 18-10-2018 RU84_18275 3fba87de63577db7152705ca0dccae51 184 ProSitePatterns PS01071 grpE protein signature. 141 182 - T 18-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 SUPERFAMILY SSF51064 138 183 8.5E-11 T 18-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 Gene3D G3DSA:2.30.22.10 131 184 2.2E-14 T 18-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 PRINTS PR00773 GrpE protein signature 138 153 1.8E-9 T 18-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 PRINTS PR00773 GrpE protein signature 163 182 1.8E-9 T 18-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 PRINTS PR00773 GrpE protein signature 63 79 1.8E-9 T 18-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 Hamap MF_01151 Protein GrpE [grpE]. 3 184 16.127 T 18-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 Pfam PF01025 GrpE 28 183 1.6E-34 T 18-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 SUPERFAMILY SSF58014 36 131 3.14E-18 T 18-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RU84_18275 3fba87de63577db7152705ca0dccae51 184 Gene3D G3DSA:3.90.20.20 26 130 2.0E-16 T 18-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 18-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 PIRSF PIRSF039144 1 112 7.4E-55 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 83 103 2.7E-44 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 23 41 2.7E-44 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 52 75 2.7E-44 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 2 17 2.7E-44 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 Gene3D G3DSA:3.30.70.120 1 112 9.6E-47 T 18-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 18-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.2E-43 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 SUPERFAMILY SSF54913 1 112 4.45E-46 T 18-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RU84_17285 22469da245ee0ac210dcf1e38fbd14d0 112 SMART SM00938 4 105 2.5E-66 T 18-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 RU84_18585 1827e65fdee0484297f6f3150865d037 790 Pfam PF02867 Ribonucleotide reductase, barrel domain 233 739 2.0E-147 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 Gene3D G3DSA:3.20.70.20 74 750 1.7E-204 T 18-10-2018 RU84_18585 1827e65fdee0484297f6f3150865d037 790 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 612 633 - T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 227 5.1E-16 T 18-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 SUPERFAMILY SSF51998 232 748 1.22E-156 T 18-10-2018 RU84_18585 1827e65fdee0484297f6f3150865d037 790 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 172 742 1.4E-173 T 18-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 Pfam PF03477 ATP cone domain 1 86 9.7E-13 T 18-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 SUPERFAMILY SSF48168 6 231 2.22E-54 T 18-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 PRINTS PR01183 Ribonucleotide reductase large chain signature 317 336 6.1E-45 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 PRINTS PR01183 Ribonucleotide reductase large chain signature 484 507 6.1E-45 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 PRINTS PR01183 Ribonucleotide reductase large chain signature 550 573 6.1E-45 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 PRINTS PR01183 Ribonucleotide reductase large chain signature 448 459 6.1E-45 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 PRINTS PR01183 Ribonucleotide reductase large chain signature 622 649 6.1E-45 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18585 1827e65fdee0484297f6f3150865d037 790 PRINTS PR01183 Ribonucleotide reductase large chain signature 522 544 6.1E-45 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 Gene3D G3DSA:3.40.50.300 45 232 3.6E-29 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 Gene3D G3DSA:3.40.50.300 285 488 4.0E-55 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 Pfam PF13654 AAA domain 64 579 7.3E-172 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 689 795 1.9E-10 T 18-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 SUPERFAMILY SSF54211 603 795 4.17E-33 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 100 119 1.1E-10 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 716 735 1.1E-10 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 686 705 1.1E-10 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 746 764 1.1E-10 T 18-10-2018 RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 SUPERFAMILY SSF52540 68 590 7.6E-8 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 Gene3D G3DSA:3.30.230.10 582 821 7.9E-90 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_05205 4e2511990b9346cd867679ff6c0368e8 872 Gene3D G3DSA:1.10.8.60 489 576 4.8E-14 T 18-10-2018 RU84_19015 8423937c9d85969a8e633ef0135c8c7c 212 Pfam PF00959 Phage lysozyme 94 204 2.9E-21 T 18-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RU84_19015 8423937c9d85969a8e633ef0135c8c7c 212 Gene3D G3DSA:1.10.530.40 49 212 3.6E-50 T 18-10-2018 RU84_19015 8423937c9d85969a8e633ef0135c8c7c 212 SUPERFAMILY SSF53955 64 211 9.21E-48 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_15435 27ea3003ef2cf62c68badd151372f173 133 Pfam PF02410 Ribosomal silencing factor during starvation 31 125 3.7E-26 T 18-10-2018 RU84_15435 27ea3003ef2cf62c68badd151372f173 133 SUPERFAMILY SSF81301 24 129 1.31E-36 T 18-10-2018 RU84_15435 27ea3003ef2cf62c68badd151372f173 133 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 29 125 1.1E-35 T 18-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RU84_15435 27ea3003ef2cf62c68badd151372f173 133 Gene3D G3DSA:3.30.460.10 18 129 1.1E-36 T 18-10-2018 RU84_15435 27ea3003ef2cf62c68badd151372f173 133 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 20 126 24.564 T 18-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 Pfam PF03466 LysR substrate binding domain 106 297 1.1E-17 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 73 9.4E-19 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 Gene3D G3DSA:3.40.190.10 98 296 2.2E-43 T 18-10-2018 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 7.4E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 7.4E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 7.4E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 Gene3D G3DSA:3.40.190.10 179 279 2.2E-43 T 18-10-2018 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 SUPERFAMILY SSF53850 105 307 1.16E-29 T 18-10-2018 RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 SUPERFAMILY SSF46785 12 95 8.47E-22 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08235 c6c7f77be0f240647c005fc76b5f2d65 311 Gene3D G3DSA:1.10.10.10 6 97 4.2E-32 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 SUPERFAMILY SSF75615 115 211 1.83E-24 T 18-10-2018 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Gene3D G3DSA:3.40.1010.10 215 331 1.2E-46 T 18-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 50.09 T 18-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 SUPERFAMILY SSF53790 212 456 3.66E-83 T 18-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Pfam PF13241 Putative NAD(P)-binding 7 116 5.4E-25 T 18-10-2018 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Gene3D G3DSA:3.40.50.720 1 113 3.5E-25 T 18-10-2018 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 SUPERFAMILY SSF51735 2 113 2.86E-19 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Gene3D G3DSA:3.30.160.110 114 149 1.4E-14 T 18-10-2018 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Gene3D G3DSA:3.30.950.10 332 457 4.0E-47 T 18-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Pfam PF10414 Sirohaem synthase dimerisation region 152 208 3.6E-18 T 18-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 451 1.3E-96 T 18-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 208 4.4E-59 T 18-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 PIRSF PIRSF036426 1 457 3.7E-198 T 18-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 1.1E-52 T 18-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 18-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 18-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_03845 0b56f9a168e87f5d88dbcfd148677c33 457 Gene3D G3DSA:1.10.8.210 150 211 1.9E-9 T 18-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 SUPERFAMILY SSF54423 31 82 1.61E-12 T 18-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 Pfam PF10411 Disulfide bond isomerase protein N-terminus 26 78 9.2E-15 T 18-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 SUPERFAMILY SSF52833 77 225 9.9E-33 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 Gene3D G3DSA:3.10.450.70 20 82 5.8E-10 T 18-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 Pfam PF13098 Thioredoxin-like domain 107 226 1.2E-29 T 18-10-2018 IPR012336 Thioredoxin-like fold RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 Gene3D G3DSA:3.40.30.10 99 230 1.8E-35 T 18-10-2018 RU84_18380 c67f5fe95443f2a64a6e378d1511b1ed 232 ProSitePatterns PS00194 Thioredoxin family active site. 115 133 - T 18-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 Pfam PF00501 AMP-binding enzyme 81 520 2.5E-94 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 SUPERFAMILY SSF56801 19 644 2.35E-186 T 18-10-2018 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 Gene3D G3DSA:3.40.50.12780 48 513 5.4E-108 T 18-10-2018 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 641 1.1E-302 T 18-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 Gene3D G3DSA:3.30.300.30 516 645 6.3E-30 T 18-10-2018 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 643 52.102 T 18-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 ProSitePatterns PS00455 Putative AMP-binding domain signature. 259 270 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 22 79 1.2E-19 T 18-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 RU84_00865 1a9b880b2eb5073dbe6ccd5ed0e81722 649 Pfam PF13193 AMP-binding enzyme C-terminal domain 529 607 1.4E-25 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_10815 a030c7c3229ab00b4c96c9f69d09b03c 310 Gene3D G3DSA:3.10.310.10 134 286 5.5E-109 T 18-10-2018 RU84_10815 a030c7c3229ab00b4c96c9f69d09b03c 310 Pfam PF05544 Proline racemase 6 308 2.5E-99 T 18-10-2018 IPR008794 Proline racemase family RU84_10815 a030c7c3229ab00b4c96c9f69d09b03c 310 Gene3D G3DSA:3.10.310.10 6 304 5.5E-109 T 18-10-2018 RU84_10815 a030c7c3229ab00b4c96c9f69d09b03c 310 PIRSF PIRSF029792 1 310 5.7E-96 T 18-10-2018 IPR008794 Proline racemase family RU84_10815 a030c7c3229ab00b4c96c9f69d09b03c 310 SUPERFAMILY SSF54506 2 308 3.14E-96 T 18-10-2018 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 7.6E-29 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 7.6E-29 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 7.6E-29 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 7.6E-29 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 439 7.2E-10 T 18-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 SUPERFAMILY SSF53738 4 175 5.89E-39 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 3.3E-34 T 18-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 368 7.3E-22 T 18-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Gene3D G3DSA:3.40.120.10 2 148 1.2E-52 T 18-10-2018 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 2.0E-20 T 18-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Gene3D G3DSA:3.40.120.10 170 252 1.7E-28 T 18-10-2018 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Gene3D G3DSA:3.40.120.10 253 371 3.0E-31 T 18-10-2018 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 SUPERFAMILY SSF55957 370 455 5.23E-19 T 18-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 SUPERFAMILY SSF53738 261 366 2.94E-29 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 Gene3D G3DSA:3.30.310.50 372 456 3.4E-26 T 18-10-2018 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 SUPERFAMILY SSF53738 152 259 2.51E-25 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_17950 135614b1e970d9f688c4e95719edfe72 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 18-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 Gene3D G3DSA:3.40.228.10 207 436 5.4E-57 T 18-10-2018 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 Pfam PF01568 Molydopterin dinucleotide binding domain 665 772 2.5E-9 T 18-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 PIRSF PIRSF000144 5 781 0.0 T 18-10-2018 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 Pfam PF00384 Molybdopterin oxidoreductase 122 503 3.7E-25 T 18-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 26 776 1.5E-286 T 18-10-2018 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 SUPERFAMILY SSF53706 60 644 1.83E-146 T 18-10-2018 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 Gene3D G3DSA:3.40.50.740 122 206 1.3E-7 T 18-10-2018 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 Gene3D G3DSA:3.40.50.740 437 516 1.6E-5 T 18-10-2018 RU84_04295 17a31062147babc2011362b3fe2c45ac 802 SUPERFAMILY SSF50692 662 782 2.71E-14 T 18-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RU84_14175 1aa739b9a47037685d311fe9c7d8493a 141 Gene3D G3DSA:3.40.1350.10 23 141 3.3E-41 T 18-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RU84_14175 1aa739b9a47037685d311fe9c7d8493a 141 SMART SM00990 25 129 7.0E-10 T 18-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 RU84_14175 1aa739b9a47037685d311fe9c7d8493a 141 Pfam PF08774 VRR-NUC domain 27 127 6.8E-12 T 18-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 RU84_04675 fae96cacf5afb4d86bbcca24a85600ac 294 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 26 284 1.5E-127 T 18-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 RU84_04675 fae96cacf5afb4d86bbcca24a85600ac 294 SUPERFAMILY SSF161098 25 280 2.88E-55 T 18-10-2018 IPR035906 MetI-like superfamily RU84_04675 fae96cacf5afb4d86bbcca24a85600ac 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 280 3.6E-16 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_04675 fae96cacf5afb4d86bbcca24a85600ac 294 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 23 281 1.9E-98 T 18-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RU84_04675 fae96cacf5afb4d86bbcca24a85600ac 294 Gene3D G3DSA:1.10.3720.10 27 285 8.1E-62 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 Gene3D G3DSA:3.20.20.10 53 270 4.1E-131 T 18-10-2018 IPR029066 PLP-binding barrel RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 Hamap MF_01201 Alanine racemase. 44 410 25.114 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 Pfam PF01168 Alanine racemase, N-terminal domain 51 273 1.1E-44 T 18-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 PRINTS PR00992 Alanine racemase signature 247 274 1.3E-33 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 PRINTS PR00992 Alanine racemase signature 315 330 1.3E-33 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 PRINTS PR00992 Alanine racemase signature 70 86 1.3E-33 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 PRINTS PR00992 Alanine racemase signature 106 124 1.3E-33 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 PRINTS PR00992 Alanine racemase signature 204 215 1.3E-33 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 PRINTS PR00992 Alanine racemase signature 336 353 1.3E-33 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 SMART SM01005 282 410 1.5E-47 T 18-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 SUPERFAMILY SSF50621 275 409 5.93E-41 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 TIGRFAM TIGR00492 alr: alanine racemase 47 396 2.7E-68 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 Gene3D G3DSA:2.40.37.10 47 406 4.1E-131 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 Pfam PF00842 Alanine racemase, C-terminal domain 283 408 3.8E-34 T 18-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_10575 191bd2f0697177b97bb0a820df4600f6 430 SUPERFAMILY SSF51419 51 284 2.75E-45 T 18-10-2018 IPR029066 PLP-binding barrel RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 Pfam PF00425 chorismate binding enzyme 221 480 4.0E-92 T 18-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 488 1.8E-161 T 18-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 Gene3D G3DSA:3.60.120.10 1 494 2.4E-175 T 18-10-2018 IPR005801 ADC synthase GO:0009058 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 PRINTS PR00095 Anthranilate synthase component I signature 422 436 2.3E-23 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 PRINTS PR00095 Anthranilate synthase component I signature 328 341 2.3E-23 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 PRINTS PR00095 Anthranilate synthase component I signature 437 451 2.3E-23 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 PRINTS PR00095 Anthranilate synthase component I signature 342 355 2.3E-23 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 SUPERFAMILY SSF56322 15 490 7.98E-153 T 18-10-2018 IPR005801 ADC synthase GO:0009058 RU84_17025 92a5a6e0c660b03b5a234b01027bd120 497 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 173 3.2E-37 T 18-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 288 1.2E-25 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 419 497 2.2E-12 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 187 3.1E-59 T 18-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 SUPERFAMILY SSF48179 419 496 3.32E-14 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 SUPERFAMILY SSF48179 190 294 4.93E-27 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 Gene3D G3DSA:1.10.1040.50 194 492 5.0E-85 T 18-10-2018 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 Gene3D G3DSA:3.40.50.720 6 193 8.2E-65 T 18-10-2018 RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 SUPERFAMILY SSF51735 9 190 1.17E-50 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10730 5e754c0a71b3c3b8a033391f4a776c6a 512 Gene3D G3DSA:3.30.750.190 294 411 5.0E-85 T 18-10-2018 RU84_17060 b0df67b2b0bd36c3d4f99473d9e3735d 146 Pfam PF13279 Thioesterase-like superfamily 15 131 1.2E-18 T 18-10-2018 RU84_17060 b0df67b2b0bd36c3d4f99473d9e3735d 146 SUPERFAMILY SSF54637 7 134 3.96E-33 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_17060 b0df67b2b0bd36c3d4f99473d9e3735d 146 Gene3D G3DSA:3.10.129.10 1 138 1.1E-39 T 18-10-2018 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 SUPERFAMILY SSF56053 83 177 9.29E-35 T 18-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 PIRSF PIRSF002162 1 177 5.6E-45 T 18-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 Gene3D G3DSA:3.90.930.12 1 82 2.4E-27 T 18-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.3E-72 T 18-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 5.7E-33 T 18-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 5.7E-33 T 18-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 5.7E-33 T 18-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 SUPERFAMILY SSF56053 1 82 8.15E-23 T 18-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 18-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 Gene3D G3DSA:3.90.930.12 83 177 3.7E-38 T 18-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 Pfam PF00347 Ribosomal protein L6 90 164 1.3E-17 T 18-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 Pfam PF00347 Ribosomal protein L6 11 82 5.0E-16 T 18-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02085 cdd39288bc66b6d5f471e126870dde86 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.363 T 18-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 80.065 T 18-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 SUPERFAMILY SSF53671 2 301 2.88E-103 T 18-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 300 2.0E-116 T 18-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 297 5.6E-51 T 18-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 Gene3D G3DSA:3.40.50.1370 4 133 8.0E-112 T 18-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 1.9E-30 T 18-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 1.9E-30 T 18-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 1.9E-30 T 18-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 1.9E-30 T 18-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 1.9E-30 T 18-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 Gene3D G3DSA:3.40.50.1370 134 295 8.0E-112 T 18-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 143 3.3E-49 T 18-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 5.5E-23 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 5.5E-23 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 5.5E-23 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_07425 7b70647fdbacbe2fc01f3c6cecc1451c 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 5.5E-23 T 18-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 RU84_05965 81a685bfef81082f2b27ef3b1d6f802b 151 Gene3D G3DSA:3.40.50.1240 1 145 3.2E-30 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_05965 81a685bfef81082f2b27ef3b1d6f802b 151 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 76 4.3E-13 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_05965 81a685bfef81082f2b27ef3b1d6f802b 151 SUPERFAMILY SSF53254 1 121 3.68E-21 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_05965 81a685bfef81082f2b27ef3b1d6f802b 151 SMART SM00855 2 111 1.5E-10 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 SUPERFAMILY SSF54736 52 123 3.49E-25 T 18-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 57 123 1.1E-31 T 18-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 95 9.0E-14 T 18-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 123 24.582 T 18-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 Gene3D G3DSA:1.20.5.710 2 52 2.3E-18 T 18-10-2018 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 51 6.9E-16 T 18-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 Gene3D G3DSA:3.30.1390.10 53 123 1.9E-32 T 18-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 SUPERFAMILY SSF48300 4 59 2.88E-15 T 18-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16965 7fbe5791b194f177d8895deb865fa1b6 123 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 123 1.6E-46 T 18-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_05915 d50f14d4d79172f0c9a37ea2ff087e19 261 Hamap MF_00443 Thiazole synthase [thiG]. 5 260 41.759 T 18-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RU84_05915 d50f14d4d79172f0c9a37ea2ff087e19 261 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 254 5.0E-108 T 18-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 RU84_05915 d50f14d4d79172f0c9a37ea2ff087e19 261 SUPERFAMILY SSF110399 5 246 2.22E-88 T 18-10-2018 RU84_05915 d50f14d4d79172f0c9a37ea2ff087e19 261 Gene3D G3DSA:3.20.20.70 1 259 5.3E-118 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_02305 14e2c0c004cf09deed14998aa130317f 220 Pfam PF00445 Ribonuclease T2 family 42 197 5.7E-5 T 18-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RU84_02305 14e2c0c004cf09deed14998aa130317f 220 Gene3D G3DSA:3.90.730.10 28 219 3.8E-10 T 18-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RU84_02305 14e2c0c004cf09deed14998aa130317f 220 SUPERFAMILY SSF55895 36 216 5.23E-17 T 18-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 Gene3D G3DSA:3.30.70.250 134 207 5.0E-93 T 18-10-2018 RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 SUPERFAMILY SSF55048 138 203 8.76E-15 T 18-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 Gene3D G3DSA:3.40.366.10 17 296 5.0E-93 T 18-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 SUPERFAMILY SSF52151 15 318 5.23E-71 T 18-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 Pfam PF00698 Acyl transferase domain 17 291 6.9E-37 T 18-10-2018 IPR014043 Acyl transferase RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 14 298 1.9E-99 T 18-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 PIRSF PIRSF000446 12 321 7.1E-105 T 18-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RU84_14450 5b25803203ba9c1dd8f74306449bcf14 328 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 18 325 2.0E-39 T 18-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RU84_04900 16e13a0c1ba94483ba7cad37e0e4841f 378 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 27 373 3.8E-111 T 18-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 RU84_04900 16e13a0c1ba94483ba7cad37e0e4841f 378 Gene3D G3DSA:3.40.50.2000 191 360 3.1E-131 T 18-10-2018 RU84_04900 16e13a0c1ba94483ba7cad37e0e4841f 378 Gene3D G3DSA:3.40.50.2000 6 371 3.1E-131 T 18-10-2018 RU84_04900 16e13a0c1ba94483ba7cad37e0e4841f 378 SUPERFAMILY SSF53756 6 375 1.67E-112 T 18-10-2018 RU84_04900 16e13a0c1ba94483ba7cad37e0e4841f 378 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 6 375 1.4E-130 T 18-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 RU84_07320 393bbc07472849d15b71e74ed840df94 344 Pfam PF13353 4Fe-4S single cluster domain 30 134 6.8E-9 T 18-10-2018 RU84_07320 393bbc07472849d15b71e74ed840df94 344 Gene3D G3DSA:3.20.20.70 12 344 3.8E-84 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_07320 393bbc07472849d15b71e74ed840df94 344 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 14 344 35.806 T 18-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07320 393bbc07472849d15b71e74ed840df94 344 SUPERFAMILY SSF102114 15 286 9.55E-66 T 18-10-2018 RU84_07320 393bbc07472849d15b71e74ed840df94 344 Pfam PF04055 Radical SAM superfamily 27 187 3.2E-24 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_07320 393bbc07472849d15b71e74ed840df94 344 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 14 344 1.5E-108 T 18-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07320 393bbc07472849d15b71e74ed840df94 344 Pfam PF06463 Molybdenum Cofactor Synthesis C 194 321 5.4E-27 T 18-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07320 393bbc07472849d15b71e74ed840df94 344 SMART SM00729 23 226 1.2E-5 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 271 121.788 T 18-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 SUPERFAMILY SSF56784 8 261 2.19E-52 T 18-10-2018 IPR036412 HAD-like superfamily RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 155 205 5.8E-8 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 7 259 2.9E-104 T 18-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 Gene3D G3DSA:1.10.150.240 26 103 6.5E-108 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 Gene3D G3DSA:3.40.50.1000 10 271 6.5E-108 T 18-10-2018 IPR023214 HAD superfamily RU84_10535 174eefc4a0521b364ce50ed92e9702c6 271 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 205 7.0E-8 T 18-10-2018 RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 SUPERFAMILY SSF53137 15 128 5.89E-47 T 18-10-2018 RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 9 125 3.1E-54 T 18-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 Pfam PF00411 Ribosomal protein S11 18 127 3.5E-50 T 18-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 ProSitePatterns PS00054 Ribosomal protein S11 signature. 96 118 - T 18-10-2018 IPR018102 Ribosomal S11, conserved site RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 Gene3D G3DSA:3.30.420.80 1 128 5.2E-54 T 18-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 128 32.395 T 18-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RU84_02125 d62d98601d5b7b74164ddb0d4040b590 128 PIRSF PIRSF002131 1 128 1.4E-51 T 18-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 Gene3D G3DSA:1.10.357.10 1 204 1.9E-41 T 18-10-2018 RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 85 194 1.1E-28 T 18-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 SUPERFAMILY SSF46689 2 84 1.95E-17 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 SUPERFAMILY SSF48498 83 195 9.12E-17 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 2.7E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.9E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.9E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 200 83.89 T 18-10-2018 IPR017757 Transcriptional repressor BetI RU84_13105 815b8b565ff5ba7cbf809202d9ad57af 207 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 4 194 6.3E-71 T 18-10-2018 IPR017757 Transcriptional repressor BetI RU84_06655 f31ca8484b9abd44752b5e560d139913 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 197 0.0015 T 18-10-2018 RU84_06655 f31ca8484b9abd44752b5e560d139913 256 Gene3D G3DSA:3.40.50.720 1 256 7.0E-77 T 18-10-2018 RU84_06655 f31ca8484b9abd44752b5e560d139913 256 SUPERFAMILY SSF51735 3 251 1.8E-63 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 2.0E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 2.0E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.0E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.5E-28 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 2.5E-28 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.5E-28 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-28 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.5E-28 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.5E-28 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 Pfam PF00106 short chain dehydrogenase 6 204 1.2E-48 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06655 f31ca8484b9abd44752b5e560d139913 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 294 301 - T 18-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site RU84_07630 b887b87104cc7da7962619fae4f3272e 952 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 284 361 9.0E-14 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_07630 b887b87104cc7da7962619fae4f3272e 952 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 573 584 - T 18-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 640 923 9.7E-105 T 18-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR00107 Phosphocarrier protein signature 294 310 1.5E-8 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR00107 Phosphocarrier protein signature 335 352 1.5E-8 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR00107 Phosphocarrier protein signature 320 335 1.5E-8 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_07630 b887b87104cc7da7962619fae4f3272e 952 SUPERFAMILY SSF52009 516 635 2.62E-29 T 18-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 SUPERFAMILY SSF55594 283 370 3.14E-17 T 18-10-2018 IPR035895 HPr-like superfamily RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Pfam PF00381 PTS HPr component phosphorylation site 284 360 1.5E-16 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 139 9.1E-27 T 18-10-2018 IPR002178 PTS EIIA type-2 domain RU84_07630 b887b87104cc7da7962619fae4f3272e 952 SUPERFAMILY SSF55804 147 274 2.09E-10 T 18-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 830 845 8.0E-19 T 18-10-2018 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 682 701 8.0E-19 T 18-10-2018 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 883 895 8.0E-19 T 18-10-2018 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 847 862 8.0E-19 T 18-10-2018 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Gene3D G3DSA:3.50.30.10 402 622 1.2E-57 T 18-10-2018 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 18-10-2018 IPR002178 PTS EIIA type-2 domain RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Gene3D G3DSA:3.40.930.10 1 141 5.0E-36 T 18-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Pfam PF00391 PEP-utilising enzyme, mobile domain 542 614 1.1E-18 T 18-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Gene3D G3DSA:3.20.20.60 623 952 2.0E-115 T 18-10-2018 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Pfam PF05524 PEP-utilising enzyme, N-terminal 401 517 2.8E-22 T 18-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 SUPERFAMILY SSF55804 4 139 3.84E-34 T 18-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 402 947 3.2E-152 T 18-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Gene3D G3DSA:3.30.1340.10 283 370 8.5E-19 T 18-10-2018 IPR035895 HPr-like superfamily RU84_07630 b887b87104cc7da7962619fae4f3272e 952 SUPERFAMILY SSF47831 419 534 2.22E-26 T 18-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 SUPERFAMILY SSF51621 642 932 5.5E-101 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 Gene3D G3DSA:1.10.274.10 419 536 1.2E-57 T 18-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 RU84_07630 b887b87104cc7da7962619fae4f3272e 952 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 830 848 - T 18-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 ProSitePatterns PS00211 ABC transporters family signature. 445 459 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 Pfam PF00005 ABC transporter 340 473 2.5E-23 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 Pfam PF12848 ABC transporter 230 304 1.1E-11 T 18-10-2018 IPR032781 ABC-transporter extension domain RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 Gene3D G3DSA:3.40.50.300 287 552 2.0E-74 T 18-10-2018 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 SUPERFAMILY SSF52540 302 531 3.55E-47 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 551 2.9E-290 T 18-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 Pfam PF00005 ABC transporter 22 191 1.9E-27 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 SUPERFAMILY SSF52540 9 244 9.61E-49 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 SMART SM00382 348 523 2.0E-9 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 SMART SM00382 31 236 4.1E-8 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_01280 626394f40b02730cf0f0b5457f110fa3 553 Gene3D G3DSA:3.40.50.300 1 286 4.7E-85 T 18-10-2018 RU84_02535 5ee4abb098340aeb1545f4b4b55a590b 336 Gene3D G3DSA:3.60.21.10 114 312 2.2E-20 T 18-10-2018 IPR029052 Metallo-dependent phosphatase-like RU84_02535 5ee4abb098340aeb1545f4b4b55a590b 336 SUPERFAMILY SSF56300 116 335 1.9E-31 T 18-10-2018 RU84_02535 5ee4abb098340aeb1545f4b4b55a590b 336 Pfam PF00149 Calcineurin-like phosphoesterase 116 307 7.6E-12 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Gene3D G3DSA:3.40.50.300 501 719 7.5E-51 T 18-10-2018 RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Pfam PF13604 AAA domain 346 538 3.5E-45 T 18-10-2018 RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Pfam PF01443 Viral (Superfamily 1) RNA helicase 661 709 1.5E-5 T 18-10-2018 IPR027351 (+) RNA virus helicase core domain GO:0005524 RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 SUPERFAMILY SSF52540 452 711 4.38E-30 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Gene3D G3DSA:2.30.30.940 589 667 7.5E-51 T 18-10-2018 RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Gene3D G3DSA:3.40.50.300 339 500 7.5E-51 T 18-10-2018 RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Pfam PF03389 MobA/MobL family 44 208 1.6E-26 T 18-10-2018 IPR005053 MobA/MobL protein RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 SUPERFAMILY SSF52540 187 492 7.55E-20 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_19285 7ffe8a931fc1b78354b0df6bc737ea18 970 Gene3D G3DSA:3.30.930.30 2 188 9.4E-54 T 18-10-2018 RU84_11265 7914caedbdca41413a35adba05036334 556 SUPERFAMILY SSF111126 56 189 2.88E-11 T 18-10-2018 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily RU84_11265 7914caedbdca41413a35adba05036334 556 Pfam PF02954 Bacterial regulatory protein, Fis family 514 554 2.3E-12 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_11265 7914caedbdca41413a35adba05036334 556 SUPERFAMILY SSF52540 245 479 1.19E-67 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11265 7914caedbdca41413a35adba05036334 556 Gene3D G3DSA:1.10.10.60 492 556 2.7E-14 T 18-10-2018 RU84_11265 7914caedbdca41413a35adba05036334 556 Gene3D G3DSA:1.10.8.60 415 482 1.6E-26 T 18-10-2018 RU84_11265 7914caedbdca41413a35adba05036334 556 Pfam PF02830 V4R domain 135 194 1.1E-14 T 18-10-2018 IPR004096 4-vinyl reductase, 4VR RU84_11265 7914caedbdca41413a35adba05036334 556 Pfam PF06505 Activator of aromatic catabolism 21 119 5.2E-32 T 18-10-2018 IPR010523 Activator of aromatic catabolism RU84_11265 7914caedbdca41413a35adba05036334 556 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 457 466 - T 18-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RU84_11265 7914caedbdca41413a35adba05036334 556 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 268 281 - T 18-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RU84_11265 7914caedbdca41413a35adba05036334 556 SMART SM00382 264 408 6.7E-8 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_11265 7914caedbdca41413a35adba05036334 556 Gene3D G3DSA:3.40.50.300 231 414 1.6E-62 T 18-10-2018 RU84_11265 7914caedbdca41413a35adba05036334 556 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 330 345 - T 18-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RU84_11265 7914caedbdca41413a35adba05036334 556 SUPERFAMILY SSF46689 457 556 1.66E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_11265 7914caedbdca41413a35adba05036334 556 Gene3D G3DSA:3.30.1380.20 46 199 3.3E-6 T 18-10-2018 RU84_11265 7914caedbdca41413a35adba05036334 556 ProDom PD485437 REGULATOR TRANSCRIPTIONAL FIS-TYPE HELIX-TURN-HELIX ACTIVATOR PLASMID FAMILY PHENOL-DEGRADATIVE FIS SIGMA-54 39 150 2.0E-46 T 18-10-2018 IPR010523 Activator of aromatic catabolism RU84_11265 7914caedbdca41413a35adba05036334 556 Pfam PF00158 Sigma-54 interaction domain 245 410 1.8E-67 T 18-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RU84_11265 7914caedbdca41413a35adba05036334 556 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 520 537 3.5E-10 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_11265 7914caedbdca41413a35adba05036334 556 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 537 556 3.5E-10 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_11265 7914caedbdca41413a35adba05036334 556 SMART SM00989 132 194 2.8E-20 T 18-10-2018 IPR004096 4-vinyl reductase, 4VR RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 Gene3D G3DSA:3.40.50.80 97 216 1.5E-24 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 47 61 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 107 126 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 184 192 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 71 85 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 132 141 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 25 35 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 35 47 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 PRINTS PR00409 Phthalate dioxygenase reductase family signature 85 99 1.9E-51 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 SUPERFAMILY SSF63380 2 95 2.77E-24 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 Gene3D G3DSA:2.40.30.10 1 96 1.0E-26 T 18-10-2018 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 SUPERFAMILY SSF52343 101 218 9.3E-27 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 SUPERFAMILY SSF54292 206 313 1.22E-24 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 263 271 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 231 305 8.9E-12 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_11655 b8c0e72a7a94241fe98737a986f07bdc 314 Gene3D G3DSA:3.10.20.30 218 314 2.0E-22 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 SUPERFAMILY SSF51905 6 394 3.2E-54 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 Pfam PF01494 FAD binding domain 6 353 1.1E-33 T 18-10-2018 IPR002938 FAD-binding domain GO:0071949 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 304 317 - T 18-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 Gene3D G3DSA:3.50.50.60 6 347 1.6E-92 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 Gene3D G3DSA:3.30.9.50 80 279 1.6E-92 T 18-10-2018 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 4.5E-20 T 18-10-2018 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 305 4.5E-20 T 18-10-2018 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 4.5E-20 T 18-10-2018 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 321 4.5E-20 T 18-10-2018 RU84_12205 3cdcbc853a2cce2173fba8bd47c52dfe 410 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 398 3.0E-104 T 18-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 RU84_08465 a8874f5692cb86d00f838fa22a57a17c 294 Pfam PF00156 Phosphoribosyl transferase domain 153 255 2.2E-10 T 18-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RU84_08465 a8874f5692cb86d00f838fa22a57a17c 294 SUPERFAMILY SSF53271 14 130 2.72E-10 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_08465 a8874f5692cb86d00f838fa22a57a17c 294 SMART SM01400 1 105 8.9E-4 T 18-10-2018 RU84_08465 a8874f5692cb86d00f838fa22a57a17c 294 Gene3D G3DSA:3.40.50.2020 150 289 1.0E-23 T 18-10-2018 RU84_08465 a8874f5692cb86d00f838fa22a57a17c 294 Gene3D G3DSA:3.40.50.2020 8 142 2.5E-12 T 18-10-2018 RU84_08465 a8874f5692cb86d00f838fa22a57a17c 294 SUPERFAMILY SSF53271 159 280 2.1E-18 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 ProSitePatterns PS00211 ABC transporters family signature. 832 846 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 927 0.0 T 18-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Gene3D G3DSA:1.20.1580.10 694 832 6.4E-142 T 18-10-2018 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 SUPERFAMILY SSF52540 6 570 7.08E-48 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Gene3D G3DSA:3.40.50.300 618 938 6.4E-142 T 18-10-2018 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Gene3D G3DSA:3.30.190.20 132 245 2.0E-245 T 18-10-2018 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 SUPERFAMILY SSF52540 617 911 2.56E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Gene3D G3DSA:1.10.8.280 288 404 2.0E-245 T 18-10-2018 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Pfam PF00005 ABC transporter 625 862 1.4E-11 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 942 22.387 T 18-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Gene3D G3DSA:3.40.50.300 8 596 2.0E-245 T 18-10-2018 RU84_00935 a590b8f671c4a08caf09c60d3d947586 944 Gene3D G3DSA:1.20.1580.10 92 493 2.0E-245 T 18-10-2018 RU84_00375 450333d3937abe372e083e7040d425b4 250 SMART SM00345 26 85 9.2E-17 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_00375 450333d3937abe372e083e7040d425b4 250 Gene3D G3DSA:3.40.1410.10 105 239 1.5E-30 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_00375 450333d3937abe372e083e7040d425b4 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 59 4.5E-9 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_00375 450333d3937abe372e083e7040d425b4 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 59 75 4.5E-9 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_00375 450333d3937abe372e083e7040d425b4 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 85 4.6E-20 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_00375 450333d3937abe372e083e7040d425b4 250 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 21 249 2.9E-100 T 18-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 RU84_00375 450333d3937abe372e083e7040d425b4 250 SUPERFAMILY SSF46785 16 89 8.91E-22 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00375 450333d3937abe372e083e7040d425b4 250 SMART SM00866 106 243 5.1E-33 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_00375 450333d3937abe372e083e7040d425b4 250 SUPERFAMILY SSF64288 110 249 3.14E-40 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_00375 450333d3937abe372e083e7040d425b4 250 Gene3D G3DSA:1.10.10.10 18 86 4.9E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00375 450333d3937abe372e083e7040d425b4 250 Pfam PF07702 UTRA domain 107 242 3.5E-33 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 Gene3D G3DSA:1.10.287.130 265 380 1.7E-25 T 18-10-2018 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 SUPERFAMILY SSF158472 265 312 1.83E-7 T 18-10-2018 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 Gene3D G3DSA:3.30.565.10 386 535 7.6E-31 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 487 1.7E-10 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 473 1.7E-10 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 512 1.7E-10 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 532 1.7E-10 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 SMART SM00388 314 379 2.6E-14 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 SMART SM00304 261 313 5.2E-10 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 SUPERFAMILY SSF55874 368 537 4.19E-34 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 SMART SM00387 423 535 7.4E-32 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 Pfam PF00672 HAMP domain 265 310 3.6E-8 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 426 533 3.7E-21 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 Pfam PF00512 His Kinase A (phospho-acceptor) domain 315 379 2.4E-10 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_14800 75b9717cf28839ece369144b9d9cfbac 549 SUPERFAMILY SSF47384 297 379 4.32E-16 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_07785 e9ccd2c11870fbf06850a4cee520b888 216 SUPERFAMILY SSF116726 131 214 1.11E-8 T 18-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RU84_07785 e9ccd2c11870fbf06850a4cee520b888 216 SUPERFAMILY SSF51735 3 133 7.28E-34 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_07785 e9ccd2c11870fbf06850a4cee520b888 216 Gene3D G3DSA:3.30.70.1450 138 213 3.0E-9 T 18-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RU84_07785 e9ccd2c11870fbf06850a4cee520b888 216 Gene3D G3DSA:3.40.50.720 2 137 2.2E-35 T 18-10-2018 RU84_07785 e9ccd2c11870fbf06850a4cee520b888 216 Pfam PF02254 TrkA-N domain 4 119 7.7E-28 T 18-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RU84_16645 87f325f603fce457fd9edc73cf69333f 315 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 222 236 - T 18-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RU84_16645 87f325f603fce457fd9edc73cf69333f 315 Pfam PF01209 ubiE/COQ5 methyltransferase family 83 314 1.6E-99 T 18-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RU84_16645 87f325f603fce457fd9edc73cf69333f 315 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 100 115 - T 18-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 RU84_16645 87f325f603fce457fd9edc73cf69333f 315 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 89 314 1.6E-83 T 18-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RU84_16645 87f325f603fce457fd9edc73cf69333f 315 SUPERFAMILY SSF53335 83 312 2.63E-49 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_16645 87f325f603fce457fd9edc73cf69333f 315 Gene3D G3DSA:3.40.50.150 95 315 2.7E-75 T 18-10-2018 RU84_16645 87f325f603fce457fd9edc73cf69333f 315 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 80 314 38.586 T 18-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 RU84_03745 088d1c9b7e15d2d5f7814ff3358a31fb 338 Gene3D G3DSA:1.10.287.110 130 230 1.4E-5 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_03745 088d1c9b7e15d2d5f7814ff3358a31fb 338 SUPERFAMILY SSF46565 187 227 4.58E-5 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_18050 4342fed9036a7e04f6fe239cddb6dc02 727 Gene3D G3DSA:3.40.50.300 452 725 1.5E-78 T 18-10-2018 RU84_18050 4342fed9036a7e04f6fe239cddb6dc02 727 Pfam PF13614 AAA domain 544 691 1.1E-15 T 18-10-2018 IPR025669 AAA domain RU84_18050 4342fed9036a7e04f6fe239cddb6dc02 727 Pfam PF02706 Chain length determinant protein 9 101 2.9E-21 T 18-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 RU84_18050 4342fed9036a7e04f6fe239cddb6dc02 727 Pfam PF13807 G-rich domain on putative tyrosine kinase 377 458 3.2E-30 T 18-10-2018 IPR032807 Tyrosine kinase, G-rich domain RU84_18050 4342fed9036a7e04f6fe239cddb6dc02 727 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 514 717 6.4E-53 T 18-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 RU84_18050 4342fed9036a7e04f6fe239cddb6dc02 727 SUPERFAMILY SSF52540 532 712 2.21E-39 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01790 2e14b9371b9926249c291df9c573980d 300 Pfam PF00892 EamA-like transporter family 161 292 1.4E-18 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_01790 2e14b9371b9926249c291df9c573980d 300 Pfam PF00892 EamA-like transporter family 17 147 1.4E-26 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_01790 2e14b9371b9926249c291df9c573980d 300 SUPERFAMILY SSF103481 195 297 1.57E-15 T 18-10-2018 RU84_01790 2e14b9371b9926249c291df9c573980d 300 SUPERFAMILY SSF103481 49 150 1.44E-17 T 18-10-2018 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Gene3D G3DSA:3.40.1190.10 111 324 1.5E-82 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 416 1.4E-22 T 18-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 SUPERFAMILY SSF53623 108 325 1.7E-74 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Gene3D G3DSA:3.40.50.720 23 110 8.7E-33 T 18-10-2018 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Gene3D G3DSA:3.90.190.20 325 480 1.1E-45 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 24 473 1.7E-170 T 18-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 22 480 43.174 T 18-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Pfam PF01225 Mur ligase family, catalytic domain 24 122 1.2E-29 T 18-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 SUPERFAMILY SSF53244 326 475 1.14E-45 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 Pfam PF08245 Mur ligase middle domain 127 307 5.7E-30 T 18-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RU84_00730 57346a2c3e1b421855f6044a5e60fe0b 482 SUPERFAMILY SSF51984 22 109 1.7E-29 T 18-10-2018 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PIRSF PIRSF000166 1 310 3.7E-119 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 Gene3D G3DSA:3.40.1500.10 1 316 7.1E-139 T 18-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 173 197 - T 18-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 132 154 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 97 121 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 241 268 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 269 295 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 169 198 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 38 54 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 PRINTS PR00073 Coprogen oxidase signature 55 76 2.0E-75 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 SUPERFAMILY SSF102886 7 309 3.01E-125 T 18-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_01865 8624356d0a97f19a15a793d0e60775c3 316 Pfam PF01218 Coproporphyrinogen III oxidase 11 309 2.6E-119 T 18-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 RU84_06960 ae61c47990574be53b2e08538157a41b 253 SUPERFAMILY SSF51735 16 215 4.82E-40 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_06960 ae61c47990574be53b2e08538157a41b 253 Gene3D G3DSA:3.40.50.720 11 253 8.7E-44 T 18-10-2018 RU84_06960 ae61c47990574be53b2e08538157a41b 253 Pfam PF00106 short chain dehydrogenase 14 196 2.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Pfam PF02779 Transketolase, pyrimidine binding domain 593 787 8.1E-64 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Pfam PF00676 Dehydrogenase E1 component 212 515 3.1E-52 T 18-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Gene3D G3DSA:3.40.50.12470 556 802 2.6E-165 T 18-10-2018 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Gene3D G3DSA:1.10.287.1150 82 164 5.8E-26 T 18-10-2018 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 14 50 4.0E-14 T 18-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 SMART SM00861 593 786 3.7E-60 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 SUPERFAMILY SSF52518 119 546 4.21E-90 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 935 0.0 T 18-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 SUPERFAMILY SSF52518 575 793 3.83E-49 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 PIRSF PIRSF000157 1 937 0.0 T 18-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 935 1.3E-50 T 18-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Gene3D G3DSA:3.40.50.970 165 525 1.1E-148 T 18-10-2018 RU84_03940 50b54e6a83815f6f3319a4fe8680d7da 946 Gene3D G3DSA:3.40.50.11610 723 932 2.6E-165 T 18-10-2018 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 Pfam PF01416 tRNA pseudouridine synthase 11 104 2.3E-5 T 18-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 Pfam PF01416 tRNA pseudouridine synthase 144 246 1.5E-27 T 18-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 3.5E-63 T 18-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 33.241 T 18-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 SUPERFAMILY SSF55120 1 259 1.06E-85 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 PIRSF PIRSF001430 1 254 1.0E-75 T 18-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 Gene3D G3DSA:3.30.70.580 1 106 1.8E-34 T 18-10-2018 RU84_16240 59fdbde8f925305c1c51fef7a172c884 265 Gene3D G3DSA:3.30.70.660 107 243 8.5E-47 T 18-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 SUPERFAMILY SSF53955 54 262 5.91E-75 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 74 750 1.1E-180 T 18-10-2018 RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 Pfam PF17092 Penicillin-binding protein OB-like domain 325 419 2.6E-20 T 18-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 Pfam PF00905 Penicillin binding protein transpeptidase domain 424 596 5.1E-26 T 18-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 SUPERFAMILY SSF56601 217 760 7.14E-123 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 Gene3D G3DSA:2.40.50.140 322 416 2.2E-30 T 18-10-2018 RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 Pfam PF00912 Transglycosylase 62 235 6.4E-61 T 18-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_01430 35a205b503a05f9fe5627f26935d8aaf 851 Gene3D G3DSA:1.10.3810.10 55 249 1.7E-74 T 18-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 4.9E-50 T 18-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 Gene3D G3DSA:3.40.50.2020 7 302 1.3E-131 T 18-10-2018 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 197 313 8.6E-29 T 18-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 SMART SM01400 4 121 7.3E-79 T 18-10-2018 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 18-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 48.503 T 18-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 314 1.8E-121 T 18-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 SUPERFAMILY SSF53271 69 306 2.14E-65 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_14390 5f88cfc8a526d13dd6a8a8852e8bc852 316 Gene3D G3DSA:3.40.50.2020 148 290 1.3E-131 T 18-10-2018 RU84_17865 eaef31da63a974086c10792619248e8d 233 Pfam PF06210 Protein of unknown function (DUF1003) 116 215 5.6E-41 T 18-10-2018 IPR010406 Protein of unknown function DUF1003 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 SUPERFAMILY SSF52833 4 107 9.31E-37 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 6.0E-36 T 18-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 Gene3D G3DSA:3.40.30.10 1 108 1.2E-34 T 18-10-2018 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 PIRSF PIRSF000077 2 108 5.4E-39 T 18-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 PRINTS PR00421 Thioredoxin family signature 32 41 2.4E-7 T 18-10-2018 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 PRINTS PR00421 Thioredoxin family signature 72 83 2.4E-7 T 18-10-2018 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 PRINTS PR00421 Thioredoxin family signature 24 32 2.4E-7 T 18-10-2018 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 Pfam PF00085 Thioredoxin 5 106 2.1E-34 T 18-10-2018 IPR013766 Thioredoxin domain GO:0045454 RU84_15260 f14d9a08ecb9a09b588a1bacdb805a17 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 18-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 SUPERFAMILY SSF51971 264 592 5.06E-25 T 18-10-2018 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 120 242 1.4E-36 T 18-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 Gene3D G3DSA:3.40.50.150 10 250 3.2E-87 T 18-10-2018 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 Gene3D G3DSA:3.50.50.60 267 610 2.6E-80 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 8 612 21.821 T 18-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 Gene3D G3DSA:3.30.9.10 344 548 2.6E-80 T 18-10-2018 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 SUPERFAMILY SSF54373 457 540 2.09E-5 T 18-10-2018 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 266 612 2.9E-73 T 18-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 RU84_02625 5a9d75b36fe6bb6d6307515c2a6b6b49 623 Pfam PF01266 FAD dependent oxidoreductase 267 586 6.6E-26 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-38 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-38 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.4E-38 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-38 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.4E-38 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-38 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 SUPERFAMILY SSF51735 2 250 1.5E-76 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 3.8E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 3.8E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 3.8E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 Gene3D G3DSA:3.40.50.720 1 250 3.4E-77 T 18-10-2018 RU84_08245 a13c40d5ec155f63fb78ab63694e5d23 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 249 2.8E-65 T 18-10-2018 RU84_09010 3c347e6e602b785a6b7a07bf92e6f3c5 172 PIRSF PIRSF006135 1 171 4.3E-54 T 18-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 RU84_09010 3c347e6e602b785a6b7a07bf92e6f3c5 172 SUPERFAMILY SSF52540 3 169 2.77E-54 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09010 3c347e6e602b785a6b7a07bf92e6f3c5 172 Gene3D G3DSA:3.40.50.300 2 169 1.4E-53 T 18-10-2018 RU84_09010 3c347e6e602b785a6b7a07bf92e6f3c5 172 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 166 7.4E-58 T 18-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 SUPERFAMILY SSF82866 114 300 4.05E-39 T 18-10-2018 RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 49 292 4.4E-76 T 18-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 Pfam PF02355 Protein export membrane protein 124 299 1.1E-61 T 18-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 PRINTS PR01755 Bacterial translocase SecF protein signature 209 227 1.2E-26 T 18-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 PRINTS PR01755 Bacterial translocase SecF protein signature 161 175 1.2E-26 T 18-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 PRINTS PR01755 Bacterial translocase SecF protein signature 48 63 1.2E-26 T 18-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 PRINTS PR01755 Bacterial translocase SecF protein signature 241 256 1.2E-26 T 18-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 110 290 2.9E-47 T 18-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 Pfam PF07549 SecD/SecF GG Motif 43 70 7.1E-10 T 18-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 Gene3D G3DSA:1.20.1640.10 109 303 1.8E-12 T 18-10-2018 RU84_02665 71cd27d3b0d96e207dc6d2ba607c5dce 320 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 21 303 26.793 T 18-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 RU84_00515 249fd562e0c21a2584162e331a1f9639 398 Gene3D G3DSA:3.40.50.1820 308 397 1.4E-7 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00515 249fd562e0c21a2584162e331a1f9639 398 Pfam PF12146 Serine aminopeptidase, S33 130 359 3.4E-14 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_00515 249fd562e0c21a2584162e331a1f9639 398 PIRSF PIRSF029171 6 394 1.3E-81 T 18-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RU84_00515 249fd562e0c21a2584162e331a1f9639 398 Gene3D G3DSA:3.40.50.1820 20 239 2.2E-51 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00515 249fd562e0c21a2584162e331a1f9639 398 SUPERFAMILY SSF53474 80 383 2.46E-32 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05085 38a3337aad10b3a8dfe55623813f99a6 457 Gene3D G3DSA:3.40.640.10 71 338 4.7E-135 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_05085 38a3337aad10b3a8dfe55623813f99a6 457 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 15 455 1.1E-257 T 18-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 RU84_05085 38a3337aad10b3a8dfe55623813f99a6 457 SUPERFAMILY SSF53383 24 448 8.3E-122 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_05085 38a3337aad10b3a8dfe55623813f99a6 457 Gene3D G3DSA:3.90.1150.10 23 441 4.7E-135 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_05085 38a3337aad10b3a8dfe55623813f99a6 457 Pfam PF00202 Aminotransferase class-III 34 447 2.1E-96 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_05085 38a3337aad10b3a8dfe55623813f99a6 457 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_05785 89d3f32f4d8bd621b53b2320198415be 289 SUPERFAMILY SSF54506 5 288 7.33E-75 T 18-10-2018 RU84_05785 89d3f32f4d8bd621b53b2320198415be 289 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 289 2.1E-75 T 18-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RU84_05785 89d3f32f4d8bd621b53b2320198415be 289 PIRSF PIRSF016184 1 289 1.0E-83 T 18-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RU84_05785 89d3f32f4d8bd621b53b2320198415be 289 Gene3D G3DSA:3.10.310.10 7 283 1.4E-89 T 18-10-2018 RU84_05785 89d3f32f4d8bd621b53b2320198415be 289 Gene3D G3DSA:3.10.310.10 126 281 1.4E-89 T 18-10-2018 RU84_05785 89d3f32f4d8bd621b53b2320198415be 289 Pfam PF02567 Phenazine biosynthesis-like protein 9 285 6.4E-69 T 18-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 Gene3D G3DSA:3.30.230.10 73 165 1.2E-36 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 162 3.5E-65 T 18-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 SUPERFAMILY SSF54211 79 158 2.2E-26 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 162 34.042 T 18-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 156 1.9E-29 T 18-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 ProSitePatterns PS00585 Ribosomal protein S5 signature. 27 59 - T 18-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 Pfam PF00333 Ribosomal protein S5, N-terminal domain 10 73 2.6E-27 T 18-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 Gene3D G3DSA:3.30.160.20 1 72 4.6E-29 T 18-10-2018 RU84_02095 0641093f89eb2237c5bc8e1c4bb0cdba 165 SUPERFAMILY SSF54768 7 75 9.42E-23 T 18-10-2018 RU84_02280 d891610e043487e64393d02c8c54131d 294 Gene3D G3DSA:3.30.1150.10 129 287 1.1E-17 T 18-10-2018 RU84_02280 d891610e043487e64393d02c8c54131d 294 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 207 284 3.3E-13 T 18-10-2018 IPR037682 TonB, C-terminal GO:0055085 RU84_02280 d891610e043487e64393d02c8c54131d 294 SUPERFAMILY SSF74653 188 287 5.2E-17 T 18-10-2018 RU84_02280 d891610e043487e64393d02c8c54131d 294 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 209 285 3.6E-13 T 18-10-2018 IPR006260 TonB/TolA, C-terminal RU84_08550 f44719c7cc328433669c57ecccf862e7 172 Gene3D G3DSA:3.40.630.30 2 171 1.4E-41 T 18-10-2018 RU84_08550 f44719c7cc328433669c57ecccf862e7 172 SUPERFAMILY SSF55729 18 171 1.61E-24 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_08550 f44719c7cc328433669c57ecccf862e7 172 Pfam PF00583 Acetyltransferase (GNAT) family 47 144 7.0E-13 T 18-10-2018 IPR000182 GNAT domain RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 SUPERFAMILY SSF52777 209 453 1.11E-40 T 18-10-2018 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 Pfam PF00668 Condensation domain 26 456 5.8E-34 T 18-10-2018 IPR001242 Condensation domain RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 Pfam PF00668 Condensation domain 496 867 1.4E-20 T 18-10-2018 IPR001242 Condensation domain RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 Gene3D G3DSA:3.30.559.30 645 871 1.6E-16 T 18-10-2018 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 Gene3D G3DSA:3.30.559.10 465 644 1.4E-29 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 Gene3D G3DSA:3.30.559.10 23 200 1.2E-32 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 SUPERFAMILY SSF52777 29 200 2.56E-16 T 18-10-2018 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 Gene3D G3DSA:3.30.559.30 207 462 2.2E-61 T 18-10-2018 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 SUPERFAMILY SSF52777 467 651 3.45E-13 T 18-10-2018 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 SUPERFAMILY SSF52777 643 864 1.33E-36 T 18-10-2018 RU84_05350 10dc5348648a78ea8fab2fd4b0098836 980 SUPERFAMILY SSF47336 908 977 5.33E-5 T 18-10-2018 IPR036736 ACP-like superfamily RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 SUPERFAMILY SSF54862 470 570 1.24E-29 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 Gene3D G3DSA:3.30.9.90 83 470 9.4E-191 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 1.4E-6 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 183 198 1.4E-6 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 SUPERFAMILY SSF51905 6 438 1.85E-46 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 466 567 1.7E-50 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 Gene3D G3DSA:3.50.50.60 10 407 9.4E-191 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 Pfam PF01946 Thi4 family 8 59 1.8E-6 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 SUPERFAMILY SSF54373 215 311 1.41E-33 T 18-10-2018 RU84_16520 830f12ae9cfeef50898b1a62334b6cf0 570 Gene3D G3DSA:3.30.70.20 471 565 3.9E-37 T 18-10-2018 RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 SUPERFAMILY SSF48498 90 198 8.49E-17 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 68 3.5E-14 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 Gene3D G3DSA:1.10.357.10 15 199 3.2E-53 T 18-10-2018 RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 ProSitePatterns PS01081 TetR-type HTH domain signature. 35 66 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 1.6E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 1.6E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_02385 a740dad2dd62d49bb26b956d9e9fc5f7 199 SUPERFAMILY SSF46689 17 95 4.09E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_04960 81f0427e6f589419aa95eefdb9ccec64 262 Pfam PF00849 RNA pseudouridylate synthase 3 147 7.7E-11 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_04960 81f0427e6f589419aa95eefdb9ccec64 262 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 7 180 5.0E-47 T 18-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RU84_04960 81f0427e6f589419aa95eefdb9ccec64 262 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 38 52 - T 18-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RU84_04960 81f0427e6f589419aa95eefdb9ccec64 262 SUPERFAMILY SSF55120 3 189 7.2E-36 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_04960 81f0427e6f589419aa95eefdb9ccec64 262 Gene3D G3DSA:3.30.70.580 1 66 3.1E-18 T 18-10-2018 RU84_04960 81f0427e6f589419aa95eefdb9ccec64 262 Gene3D G3DSA:3.30.70.1560 67 167 3.2E-39 T 18-10-2018 RU84_08410 78d06b7eb9841b04560801f94c8c5e7a 323 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 206 3.1E-23 T 18-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RU84_08410 78d06b7eb9841b04560801f94c8c5e7a 323 SUPERFAMILY SSF51735 1 320 3.5E-48 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08410 78d06b7eb9841b04560801f94c8c5e7a 323 Gene3D G3DSA:3.40.50.720 6 305 2.2E-115 T 18-10-2018 RU84_08410 78d06b7eb9841b04560801f94c8c5e7a 323 Gene3D G3DSA:3.90.25.10 178 315 2.2E-115 T 18-10-2018 RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 Pfam PF00271 Helicase conserved C-terminal domain 237 346 1.1E-29 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 SMART SM00490 265 346 1.3E-29 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 SMART SM00487 22 229 3.9E-56 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 18-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 2 382 49.673 T 18-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 Pfam PF00270 DEAD/DEAH box helicase 27 200 1.5E-47 T 18-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 SUPERFAMILY SSF52540 78 365 5.82E-73 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 Gene3D G3DSA:3.40.50.300 1 217 1.0E-73 T 18-10-2018 RU84_05945 25705dad3a535cb30f8cc394fc0ad31a 383 Gene3D G3DSA:3.40.50.300 220 377 9.3E-51 T 18-10-2018 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Gene3D G3DSA:3.90.226.10 1 314 9.5E-96 T 18-10-2018 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 717 52.169 T 18-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Gene3D G3DSA:1.10.1040.50 499 711 5.2E-79 T 18-10-2018 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 SUPERFAMILY SSF52096 6 308 1.09E-65 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 SUPERFAMILY SSF48179 497 642 4.76E-30 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 2.7E-62 T 18-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Gene3D G3DSA:3.40.50.720 315 498 1.5E-67 T 18-10-2018 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 231 1.0E-36 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 SUPERFAMILY SSF51735 314 497 5.39E-57 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 716 0.0 T 18-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 SUPERFAMILY SSF48179 626 716 3.4E-24 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 495 519 - T 18-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_16870 8ef28a8e23efeb11b4d490a630e0cf7d 717 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 498 593 2.3E-24 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_08085 53b14ca2933e5080a551717bcad12901 304 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 283 299 3.2E-7 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_08085 53b14ca2933e5080a551717bcad12901 304 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 268 283 3.2E-7 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_08085 53b14ca2933e5080a551717bcad12901 304 SUPERFAMILY SSF46689 263 302 1.34E-9 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08085 53b14ca2933e5080a551717bcad12901 304 SMART SM00342 214 299 1.9E-26 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08085 53b14ca2933e5080a551717bcad12901 304 Pfam PF14525 AraC-binding-like domain 12 129 1.3E-6 T 18-10-2018 IPR035418 Transcription regulator HTH, AraC- type, ligand binding domain-like RU84_08085 53b14ca2933e5080a551717bcad12901 304 Gene3D G3DSA:1.10.10.60 192 303 8.1E-28 T 18-10-2018 RU84_08085 53b14ca2933e5080a551717bcad12901 304 Pfam PF12833 Helix-turn-helix domain 220 300 1.2E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_07310 481a440ba4dcfb471deced0e8ab59480 209 Gene3D G3DSA:3.90.550.10 8 205 3.2E-35 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_07310 481a440ba4dcfb471deced0e8ab59480 209 Pfam PF12804 MobA-like NTP transferase domain 11 155 1.6E-23 T 18-10-2018 IPR025877 MobA-like NTP transferase RU84_07310 481a440ba4dcfb471deced0e8ab59480 209 SUPERFAMILY SSF53448 10 195 8.91E-22 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_07310 481a440ba4dcfb471deced0e8ab59480 209 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 6 196 18.745 T 18-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 RU84_17420 48b9eefb6d98a19e998cc1579b9d69c5 188 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 18-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RU84_17420 48b9eefb6d98a19e998cc1579b9d69c5 188 Gene3D G3DSA:3.40.50.360 1 187 7.6E-50 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_17420 48b9eefb6d98a19e998cc1579b9d69c5 188 SUPERFAMILY SSF52218 1 183 1.08E-41 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_17420 48b9eefb6d98a19e998cc1579b9d69c5 188 Pfam PF03358 NADPH-dependent FMN reductase 46 103 1.8E-10 T 18-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 12 201 4.1E-80 T 18-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 53 67 5.2E-5 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 83 99 5.2E-5 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 12 26 5.2E-5 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00097 Anthranilate synthase component II signature 56 65 4.9E-6 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00097 Anthranilate synthase component II signature 174 187 4.9E-6 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00097 Anthranilate synthase component II signature 83 94 4.9E-6 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Gene3D G3DSA:3.30.300.10 403 522 2.7E-49 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 9 522 55.836 T 18-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 210 522 4.7E-147 T 18-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Pfam PF00117 Glutamine amidotransferase class-I 14 197 4.8E-41 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Pfam PF02540 NAD synthase 217 288 2.2E-8 T 18-10-2018 IPR022310 NAD/GMP synthase RU84_17660 bd8584ed0bbba3506747c5473085e725 522 SUPERFAMILY SSF52317 8 234 1.13E-59 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Gene3D G3DSA:3.40.50.880 11 203 1.2E-55 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_17660 bd8584ed0bbba3506747c5473085e725 522 SUPERFAMILY SSF52402 194 417 1.63E-60 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 SUPERFAMILY SSF54810 402 522 4.45E-48 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Gene3D G3DSA:3.40.50.620 206 402 7.2E-78 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_17660 bd8584ed0bbba3506747c5473085e725 522 Pfam PF00958 GMP synthase C terminal domain 430 521 1.9E-40 T 18-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 56 65 2.8E-7 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 2.8E-7 T 18-10-2018 RU84_17660 bd8584ed0bbba3506747c5473085e725 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 83 94 2.8E-7 T 18-10-2018 RU84_10275 f86ec74d65350cc8fe66a94f537decee 538 Gene3D G3DSA:1.10.4160.10 17 479 2.9E-15 T 18-10-2018 IPR038271 Purine-cytosine permease superfamily RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Pfam PF04898 Glutamate synthase central domain 470 749 2.4E-106 T 18-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Pfam PF01645 Conserved region in glutamate synthase 806 1167 1.0E-147 T 18-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Pfam PF00310 Glutamine amidotransferases class-II 25 439 1.2E-162 T 18-10-2018 IPR017932 Glutamine amidotransferase type 2 domain RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Gene3D G3DSA:3.20.20.70 496 1182 0.0 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Gene3D G3DSA:3.20.20.70 444 804 0.0 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 SUPERFAMILY SSF69336 1223 1478 1.31E-88 T 18-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Gene3D G3DSA:3.60.20.10 25 558 0.0 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 SUPERFAMILY SSF56235 25 442 9.65E-141 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Pfam PF01493 GXGXG motif 1248 1434 5.6E-76 T 18-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 SUPERFAMILY SSF51395 462 1200 5.95E-246 T 18-10-2018 RU84_01475 d368afc7b4bab307857582c1704bdea3 1493 Gene3D G3DSA:2.160.20.60 1221 1491 3.8E-98 T 18-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Pfam PF02926 THUMP domain 32 154 7.2E-11 T 18-10-2018 IPR004114 THUMP domain GO:0003723 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 210 221 - T 18-10-2018 IPR000241 Putative RNA methylase domain RU84_11430 94072bd5327d931c287adfad6ff1a162 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 208 222 3.0E-5 T 18-10-2018 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 320 332 3.0E-5 T 18-10-2018 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Gene3D G3DSA:3.30.2130.30 12 269 5.9E-115 T 18-10-2018 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Gene3D G3DSA:3.40.50.150 182 387 5.9E-115 T 18-10-2018 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 SMART SM00981 69 167 2.1E-7 T 18-10-2018 IPR004114 THUMP domain GO:0003723 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 503 688 1.5E-19 T 18-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 323 329 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Pfam PF01170 Putative RNA methylase family UPF0020 175 387 1.0E-35 T 18-10-2018 IPR000241 Putative RNA methylase domain RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Gene3D G3DSA:3.40.50.150 511 730 1.8E-68 T 18-10-2018 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 SUPERFAMILY SSF53335 162 385 5.9E-32 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 10 731 29.707 T 18-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 SUPERFAMILY SSF53335 422 730 8.51E-62 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_11430 94072bd5327d931c287adfad6ff1a162 734 PIRSF PIRSF037618 6 732 1.4E-287 T 18-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 RU84_11430 94072bd5327d931c287adfad6ff1a162 734 Gene3D G3DSA:3.30.750.80 419 510 1.4E-33 T 18-10-2018 RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 2.3E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 2.3E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 2.3E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 Gene3D G3DSA:3.40.50.720 13 264 1.3E-64 T 18-10-2018 RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 2.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 2.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 2.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 2.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 2.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 Pfam PF00106 short chain dehydrogenase 17 203 6.5E-47 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11585 1f699414cc61f843615d5591f22d6cf7 277 SUPERFAMILY SSF51735 14 269 1.88E-63 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16205 78daaa92938680cb3b0d7816793c7f64 366 Gene3D G3DSA:3.40.50.2000 21 361 4.9E-58 T 18-10-2018 RU84_16205 78daaa92938680cb3b0d7816793c7f64 366 SUPERFAMILY SSF53756 7 365 2.73E-66 T 18-10-2018 RU84_16205 78daaa92938680cb3b0d7816793c7f64 366 Pfam PF13439 Glycosyltransferase Family 4 13 165 1.9E-26 T 18-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RU84_16205 78daaa92938680cb3b0d7816793c7f64 366 Pfam PF00534 Glycosyl transferases group 1 187 339 1.9E-28 T 18-10-2018 IPR001296 Glycosyl transferase, family 1 RU84_16205 78daaa92938680cb3b0d7816793c7f64 366 Gene3D G3DSA:3.40.50.2000 163 348 4.9E-58 T 18-10-2018 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Gene3D G3DSA:3.30.70.1050 1 114 2.0E-35 T 18-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 PIRSF PIRSF003095 1 441 1.3E-127 T 18-10-2018 IPR005215 Trigger factor GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Gene3D G3DSA:3.10.50.40 149 245 6.9E-98 T 18-10-2018 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 TIGRFAM TIGR00115 tig: trigger factor 12 419 5.7E-143 T 18-10-2018 IPR005215 Trigger factor GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 SUPERFAMILY SSF54534 101 241 2.75E-36 T 18-10-2018 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 235 8.2E-16 T 18-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 6.7E-42 T 18-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 SUPERFAMILY SSF109998 247 436 3.14E-44 T 18-10-2018 IPR027304 Trigger factor/SurA domain superfamily RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Gene3D G3DSA:1.10.3120.10 115 424 6.9E-98 T 18-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 SUPERFAMILY SSF102735 1 129 6.54E-38 T 18-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 419 9.9E-36 T 18-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 RU84_15975 e725b7dbfad2b49ede035c0133b4c0f5 444 Hamap MF_00303 Trigger factor [tig]. 1 425 21.693 T 18-10-2018 IPR005215 Trigger factor GO:0015031 RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Gene3D G3DSA:3.40.50.10070 25 159 3.2E-32 T 18-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Pfam PF04052 TolB amino-terminal domain 30 123 6.0E-20 T 18-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Pfam PF07676 WD40-like Beta Propeller Repeat 369 393 0.0016 T 18-10-2018 IPR011659 WD40-like Beta Propeller RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Pfam PF07676 WD40-like Beta Propeller Repeat 200 223 0.0084 T 18-10-2018 IPR011659 WD40-like Beta Propeller RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Pfam PF07676 WD40-like Beta Propeller Repeat 277 312 1.0E-11 T 18-10-2018 IPR011659 WD40-like Beta Propeller RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Pfam PF07676 WD40-like Beta Propeller Repeat 235 268 2.3E-8 T 18-10-2018 IPR011659 WD40-like Beta Propeller RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Gene3D G3DSA:2.120.10.30 160 426 1.5E-82 T 18-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 24 423 1.4E-149 T 18-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 10 423 41.835 T 18-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 SUPERFAMILY SSF69304 149 425 3.66E-54 T 18-10-2018 RU84_04550 72bf3665ac1e6803fef56aa75b164c88 426 SUPERFAMILY SSF52964 38 156 3.14E-27 T 18-10-2018 RU84_04695 3aaffb4e1385f50fd18b32ddf6a84c14 270 Pfam PF01063 Amino-transferase class IV 25 247 5.2E-44 T 18-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 RU84_04695 3aaffb4e1385f50fd18b32ddf6a84c14 270 Gene3D G3DSA:3.30.470.10 3 107 1.4E-23 T 18-10-2018 RU84_04695 3aaffb4e1385f50fd18b32ddf6a84c14 270 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 6 261 3.6E-67 T 18-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 RU84_04695 3aaffb4e1385f50fd18b32ddf6a84c14 270 Gene3D G3DSA:3.20.10.10 125 264 2.0E-37 T 18-10-2018 RU84_04695 3aaffb4e1385f50fd18b32ddf6a84c14 270 SUPERFAMILY SSF56752 2 260 2.75E-53 T 18-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 RU84_10000 d6bbb8f9b1afd30f3fa42110489f7cd5 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.7E-13 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10000 d6bbb8f9b1afd30f3fa42110489f7cd5 296 Gene3D G3DSA:1.10.10.10 3 88 1.1E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10000 d6bbb8f9b1afd30f3fa42110489f7cd5 296 SUPERFAMILY SSF53850 90 292 1.48E-36 T 18-10-2018 RU84_10000 d6bbb8f9b1afd30f3fa42110489f7cd5 296 Gene3D G3DSA:3.40.190.290 91 292 9.2E-50 T 18-10-2018 RU84_10000 d6bbb8f9b1afd30f3fa42110489f7cd5 296 SUPERFAMILY SSF46785 4 84 5.44E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10000 d6bbb8f9b1afd30f3fa42110489f7cd5 296 Pfam PF03466 LysR substrate binding domain 88 290 6.4E-33 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 Pfam PF00743 Flavin-binding monooxygenase-like 78 348 4.1E-16 T 18-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 174 198 3.6E-5 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 3.6E-5 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 SUPERFAMILY SSF51905 1 301 2.09E-49 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 Gene3D G3DSA:3.50.50.60 300 477 3.3E-9 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 62 9.4E-8 T 18-10-2018 RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 Gene3D G3DSA:3.50.50.60 1 157 1.2E-35 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 Gene3D G3DSA:3.50.50.60 158 251 2.5E-8 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02145 1391bed96c6dae8f11f8236d78a55a32 496 SUPERFAMILY SSF51905 281 415 8.81E-12 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07685 0b3d9d626a2b311f9c35222c8a11b0b7 143 Pfam PF00571 CBS domain 16 59 1.4E-9 T 18-10-2018 IPR000644 CBS domain RU84_07685 0b3d9d626a2b311f9c35222c8a11b0b7 143 Pfam PF00571 CBS domain 73 127 2.4E-13 T 18-10-2018 IPR000644 CBS domain RU84_07685 0b3d9d626a2b311f9c35222c8a11b0b7 143 SUPERFAMILY SSF54631 15 128 1.52E-33 T 18-10-2018 RU84_07685 0b3d9d626a2b311f9c35222c8a11b0b7 143 Gene3D G3DSA:3.10.580.10 1 143 3.3E-45 T 18-10-2018 RU84_07685 0b3d9d626a2b311f9c35222c8a11b0b7 143 SMART SM00116 80 127 3.0E-9 T 18-10-2018 IPR000644 CBS domain RU84_07685 0b3d9d626a2b311f9c35222c8a11b0b7 143 SMART SM00116 15 62 1.7E-6 T 18-10-2018 IPR000644 CBS domain RU84_17100 dbb319b75cbdf29617c48ca1f5cfe462 89 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 25.915 T 18-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RU84_17100 dbb319b75cbdf29617c48ca1f5cfe462 89 Gene3D G3DSA:1.10.3880.10 1 89 2.1E-34 T 18-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 RU84_17100 dbb319b75cbdf29617c48ca1f5cfe462 89 SUPERFAMILY SSF111148 1 88 9.55E-36 T 18-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 RU84_17100 dbb319b75cbdf29617c48ca1f5cfe462 89 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 3.0E-39 T 18-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RU84_17100 dbb319b75cbdf29617c48ca1f5cfe462 89 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 73 8.0E-35 T 18-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RU84_17100 dbb319b75cbdf29617c48ca1f5cfe462 89 PIRSF PIRSF029827 1 89 2.7E-38 T 18-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 RU84_17380 73f6b0ca46d40869359eed7556f4c389 252 Pfam PF01183 Glycosyl hydrolases family 25 50 223 2.3E-47 T 18-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 RU84_17380 73f6b0ca46d40869359eed7556f4c389 252 SUPERFAMILY SSF51445 43 245 3.51E-59 T 18-10-2018 IPR017853 Glycoside hydrolase superfamily RU84_17380 73f6b0ca46d40869359eed7556f4c389 252 Gene3D G3DSA:3.20.20.80 32 246 3.0E-69 T 18-10-2018 RU84_17380 73f6b0ca46d40869359eed7556f4c389 252 SMART SM00641 46 152 2.7E-15 T 18-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup RU84_05800 7190ad76c23108cb5d4b4b94cd715d11 422 Pfam PF02308 MgtC family 22 136 3.0E-15 T 18-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 RU84_05800 7190ad76c23108cb5d4b4b94cd715d11 422 Pfam PF13194 Domain of unknown function (DUF4010) 186 392 2.0E-27 T 18-10-2018 IPR025105 Domain of unknown function DUF4010 RU84_04135 f8197a59818a077f031332052735736c 610 PIRSF PIRSF001348 1 608 4.9E-274 T 18-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 Gene3D G3DSA:2.170.8.10 53 395 9.1E-263 T 18-10-2018 RU84_04135 f8197a59818a077f031332052735736c 610 Gene3D G3DSA:3.40.449.10 18 240 9.1E-263 T 18-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 6 607 51.583 T 18-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 241 603 3.3E-168 T 18-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 Gene3D G3DSA:3.90.228.20 241 601 9.1E-263 T 18-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 SUPERFAMILY SSF68923 4 240 3.71E-100 T 18-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 265 273 - T 18-10-2018 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 18 237 3.1E-103 T 18-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 RU84_04135 f8197a59818a077f031332052735736c 610 SUPERFAMILY SSF53795 241 606 5.04E-156 T 18-10-2018 RU84_08285 95a3b717f7096462a101559e4ddd74bf 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 9.2E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08285 95a3b717f7096462a101559e4ddd74bf 192 SUPERFAMILY SSF46689 4 73 1.74E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08285 95a3b717f7096462a101559e4ddd74bf 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08285 95a3b717f7096462a101559e4ddd74bf 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08285 95a3b717f7096462a101559e4ddd74bf 192 Gene3D G3DSA:1.10.357.10 2 186 1.6E-19 T 18-10-2018 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 SUPERFAMILY SSF50129 2 95 9.14E-34 T 18-10-2018 IPR011032 GroES-like superfamily RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 4 28 - T 18-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 SMART SM00883 3 95 4.8E-54 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 26 47 1.9E-32 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 82 95 1.9E-32 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 4 19 1.9E-32 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 61 73 1.9E-32 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 Gene3D G3DSA:2.30.33.40 2 96 7.8E-36 T 18-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 Hamap MF_00580 10 kDa chaperonin [groS]. 3 96 26.628 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_19070 ccc009db0ff3e6bd9465ed1628dbbd2f 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 3.2E-33 T 18-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 315 327 5.2E-20 T 18-10-2018 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 343 367 5.2E-20 T 18-10-2018 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 189 205 5.2E-20 T 18-10-2018 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 213 227 5.2E-20 T 18-10-2018 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 Pfam PF12161 HsdM N-terminal domain 8 149 6.2E-20 T 18-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain RU84_11935 f07dc9955542ea65ba404f27aa376692 552 Pfam PF02384 N-6 DNA Methylase 168 503 6.2E-59 T 18-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 Gene3D G3DSA:3.40.50.150 192 516 1.7E-75 T 18-10-2018 RU84_11935 f07dc9955542ea65ba404f27aa376692 552 SUPERFAMILY SSF53335 7 511 1.05E-115 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_11935 f07dc9955542ea65ba404f27aa376692 552 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 318 324 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 Gene3D G3DSA:3.90.1720.10 120 248 3.2E-15 T 18-10-2018 RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 SMART SM00232 2 125 0.0093 T 18-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 Pfam PF14464 Prokaryotic homologs of the JAB domain 5 101 9.3E-12 T 18-10-2018 IPR028090 JAB domain, prokaryotic RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 Pfam PF00877 NlpC/P60 family 126 243 3.9E-19 T 18-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 Gene3D G3DSA:3.40.140.10 1 114 2.7E-17 T 18-10-2018 RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 SUPERFAMILY SSF54001 121 246 2.22E-16 T 18-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RU84_18975 6f6e4bb36a9b597f62d376f4f810d4e2 249 SUPERFAMILY SSF102712 2 144 5.36E-18 T 18-10-2018 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 275 288 - T 18-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 Pfam PF00231 ATP synthase 3 288 9.7E-95 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 Gene3D G3DSA:3.40.1380.10 61 208 1.3E-103 T 18-10-2018 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 289 9.0E-105 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 PRINTS PR00126 ATP synthase gamma subunit signature 267 288 2.9E-34 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 PRINTS PR00126 ATP synthase gamma subunit signature 236 255 2.9E-34 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 2.9E-34 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 2.9E-34 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 289 36.166 T 18-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 Gene3D G3DSA:1.10.287.80 6 285 1.3E-103 T 18-10-2018 RU84_17550 4a04be1a9ea5b40bab02d4c51fcce027 289 SUPERFAMILY SSF52943 2 289 5.23E-93 T 18-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 19 40 9.5E-10 T 18-10-2018 IPR019626 Stress-induced protein, KGG, repeat RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 108 120 48.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 238 250 10.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 282 294 10.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 194 206 10.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 172 184 10.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 130 142 64.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 151 163 64.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 326 338 55.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 260 272 48.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 348 360 48.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 304 316 48.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 370 382 10.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_10300 d544b73a4c5007f2353424030a8d87bf 411 SMART SM00384 216 228 48.0 T 18-10-2018 IPR017956 AT hook, DNA-binding motif GO:0003677 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Gene3D G3DSA:3.40.50.720 2 272 3.6E-105 T 18-10-2018 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Gene3D G3DSA:3.30.1370.170 293 350 2.3E-11 T 18-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Pfam PF11890 Domain of unknown function (DUF3410) 297 349 6.5E-13 T 18-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 SUPERFAMILY SSF51735 91 254 5.6E-31 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 26 271 1.5E-18 T 18-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 18-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 355 40.366 T 18-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 SUPERFAMILY SSF52283 16 112 2.34E-18 T 18-10-2018 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 253 8.7E-33 T 18-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RU84_04310 d0dd2666aafcc5438d2467301cfed99a 355 Gene3D G3DSA:3.40.50.720 92 254 3.6E-105 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 193 325 4.8E-46 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Pfam PF01434 Peptidase family M41 387 593 2.5E-78 T 18-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Gene3D G3DSA:3.40.50.300 141 327 1.6E-70 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 594 1.6E-232 T 18-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Gene3D G3DSA:1.20.58.760 402 600 2.2E-72 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 SUPERFAMILY SSF140990 407 602 2.09E-74 T 18-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 197 216 5.2E-5 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 616 631 5.2E-5 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Gene3D G3DSA:1.10.8.60 328 401 1.1E-26 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Pfam PF06480 FtsH Extracellular 9 71 9.9E-9 T 18-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 SMART SM00382 189 328 1.2E-25 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Gene3D G3DSA:2.40.50.920 25 101 1.4E-12 T 18-10-2018 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 SUPERFAMILY SSF52540 147 396 2.63E-72 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 609 36.568 T 18-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 RU84_04065 1bd9db534a48a449f0b04fbce81d9660 631 ProSitePatterns PS00674 AAA-protein family signature. 296 314 - T 18-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 Gene3D G3DSA:3.40.190.10 114 298 7.2E-36 T 18-10-2018 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 SUPERFAMILY SSF53850 103 309 2.81E-35 T 18-10-2018 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 Gene3D G3DSA:3.40.190.10 177 280 7.2E-36 T 18-10-2018 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 7.0E-14 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 Pfam PF03466 LysR substrate binding domain 103 307 5.2E-31 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 Gene3D G3DSA:1.10.10.10 12 98 2.7E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 SUPERFAMILY SSF46785 11 120 1.13E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 6.1E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 6.1E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08405 e76962e368ca24848c5ae9903f660c2f 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 6.1E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_00620 03f334e45f9b7c9c43a4618609368e25 167 PIRSF PIRSF017306 3 164 5.5E-41 T 18-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 RU84_00620 03f334e45f9b7c9c43a4618609368e25 167 Pfam PF04115 Ureidoglycolate lyase 4 165 2.7E-47 T 18-10-2018 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 RU84_00620 03f334e45f9b7c9c43a4618609368e25 167 SUPERFAMILY SSF51182 6 165 1.02E-50 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_00620 03f334e45f9b7c9c43a4618609368e25 167 Gene3D G3DSA:2.60.120.480 4 167 4.8E-52 T 18-10-2018 IPR024060 Ureidoglycolate lyase domain superfamily GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Gene3D G3DSA:2.40.50.140 39 154 4.1E-73 T 18-10-2018 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Gene3D G3DSA:3.30.56.10 400 474 5.3E-22 T 18-10-2018 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Pfam PF01588 Putative tRNA binding domain 45 145 3.7E-28 T 18-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SUPERFAMILY SSF46955 404 475 1.01E-16 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SUPERFAMILY SSF50249 38 197 2.3E-52 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Pfam PF03484 tRNA synthetase B5 domain 406 471 6.6E-17 T 18-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 6.1E-264 T 18-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Pfam PF03483 B3/4 domain 212 384 2.8E-67 T 18-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 5.1E-27 T 18-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 44.811 T 18-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SMART SM00873 211 384 3.9E-93 T 18-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SMART SM00896 698 791 1.1E-39 T 18-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Gene3D G3DSA:3.30.70.380 699 792 2.8E-28 T 18-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SUPERFAMILY SSF56037 208 393 9.15E-70 T 18-10-2018 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SUPERFAMILY SSF54991 694 791 2.88E-29 T 18-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SUPERFAMILY SSF55681 467 686 3.03E-46 T 18-10-2018 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Gene3D G3DSA:3.30.930.10 488 688 2.6E-52 T 18-10-2018 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Gene3D G3DSA:3.30.56.10 7 180 4.1E-73 T 18-10-2018 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 SMART SM00874 402 471 5.4E-24 T 18-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RU84_15280 ddb98678803dd52a1dc4c6ac76fc3bed 793 Gene3D G3DSA:3.50.40.10 197 393 3.9E-74 T 18-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 RU84_14515 9dd58e26c847e7881720c85c71f55716 283 Gene3D G3DSA:3.30.70.1020 115 188 1.0E-45 T 18-10-2018 RU84_14515 9dd58e26c847e7881720c85c71f55716 283 Pfam PF02358 Trehalose-phosphatase 36 249 1.1E-31 T 18-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RU84_14515 9dd58e26c847e7881720c85c71f55716 283 Gene3D G3DSA:3.40.50.1000 35 247 1.0E-45 T 18-10-2018 IPR023214 HAD superfamily RU84_14515 9dd58e26c847e7881720c85c71f55716 283 SUPERFAMILY SSF56784 35 261 9.98E-41 T 18-10-2018 IPR036412 HAD-like superfamily RU84_14515 9dd58e26c847e7881720c85c71f55716 283 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 35 224 7.9E-22 T 18-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RU84_14515 9dd58e26c847e7881720c85c71f55716 283 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 31 257 4.0E-38 T 18-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 RU84_09670 7678f62b237146dc4e54c67e19f2a467 178 Gene3D G3DSA:2.60.40.1090 21 178 1.9E-37 T 18-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 RU84_09670 7678f62b237146dc4e54c67e19f2a467 178 SUPERFAMILY SSF49401 24 178 8.95E-30 T 18-10-2018 IPR008966 Adhesion domain superfamily RU84_09670 7678f62b237146dc4e54c67e19f2a467 178 Pfam PF16970 Type-1 fimbrial protein, A 49 178 1.4E-25 T 18-10-2018 IPR039458 Type-1 fimbrial protein, A RU84_04650 987c15d5661d099af5da5344d281c44b 236 Pfam PF13394 4Fe-4S single cluster domain 39 120 2.7E-11 T 18-10-2018 RU84_04650 987c15d5661d099af5da5344d281c44b 236 SUPERFAMILY SSF102114 41 119 3.27E-15 T 18-10-2018 RU84_04650 987c15d5661d099af5da5344d281c44b 236 Pfam PF04055 Radical SAM superfamily 42 123 4.4E-15 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_04650 987c15d5661d099af5da5344d281c44b 236 PIRSF PIRSF000370 16 236 2.3E-64 T 18-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RU84_04650 987c15d5661d099af5da5344d281c44b 236 Gene3D G3DSA:3.20.20.70 18 230 2.1E-34 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_04650 987c15d5661d099af5da5344d281c44b 236 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 233 36.159 T 18-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 RU84_04650 987c15d5661d099af5da5344d281c44b 236 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 18 236 2.3E-102 T 18-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE RU84_18180 3e82d7e37355ed57460864b00d8b6ae9 188 Gene3D G3DSA:3.40.50.1580 1 187 5.8E-40 T 18-10-2018 RU84_18180 3e82d7e37355ed57460864b00d8b6ae9 188 Pfam PF01048 Phosphorylase superfamily 28 173 6.7E-18 T 18-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RU84_18180 3e82d7e37355ed57460864b00d8b6ae9 188 SUPERFAMILY SSF53167 5 183 1.7E-35 T 18-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RU84_00530 62cea95f8c37be558ed049b4e04147db 223 Gene3D G3DSA:1.10.357.10 80 217 2.3E-10 T 18-10-2018 RU84_00530 62cea95f8c37be558ed049b4e04147db 223 SUPERFAMILY SSF48498 104 206 1.78E-6 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_00530 62cea95f8c37be558ed049b4e04147db 223 Gene3D G3DSA:1.10.10.60 5 79 4.3E-11 T 18-10-2018 RU84_00530 62cea95f8c37be558ed049b4e04147db 223 SUPERFAMILY SSF46689 27 104 2.87E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 SUPERFAMILY SSF54611 2 141 4.36E-46 T 18-10-2018 IPR035958 SecB-like superfamily RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 Pfam PF02556 Preprotein translocase subunit SecB 5 142 3.3E-49 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 Gene3D G3DSA:3.10.420.10 1 152 8.7E-51 T 18-10-2018 IPR035958 SecB-like superfamily RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 Hamap MF_00821 Protein-export protein SecB [secB]. 1 144 30.871 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 72 92 1.9E-31 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 96 118 1.9E-31 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 1.9E-31 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 122 140 1.9E-31 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_15820 a05a9f0f5c8a9017e59fa7a3b7531f15 152 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 6 141 5.4E-46 T 18-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 RU84_08065 4536b234288611b246998327643c710d 161 SUPERFAMILY SSF54427 3 161 4.2E-37 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_08065 4536b234288611b246998327643c710d 161 Gene3D G3DSA:3.10.450.50 1 161 1.1E-34 T 18-10-2018 RU84_08065 4536b234288611b246998327643c710d 161 Pfam PF00866 Ring hydroxylating beta subunit 18 151 8.9E-21 T 18-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 SUPERFAMILY SSF46689 2 73 4.98E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 SUPERFAMILY SSF48498 82 209 5.78E-16 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 Gene3D G3DSA:1.10.357.10 5 215 1.3E-25 T 18-10-2018 RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 4.8E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 4.8E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.9E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08950 e8bc5ff1ed7ee5f409d220ad385b2547 215 Pfam PF09209 Domain of unknown function (DUF1956) 86 205 8.4E-15 T 18-10-2018 IPR015292 Transcription regulator YbiH, C-terminal RU84_10660 d193326f0995ae6aaa8824c8a148d405 354 Gene3D G3DSA:2.40.180.20 65 322 3.8E-92 T 18-10-2018 RU84_10660 d193326f0995ae6aaa8824c8a148d405 354 SUPERFAMILY SSF56634 30 341 4.45E-75 T 18-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10660 d193326f0995ae6aaa8824c8a148d405 354 Pfam PF00199 Catalase 58 340 9.6E-20 T 18-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10660 d193326f0995ae6aaa8824c8a148d405 354 PIRSF PIRSF000296 12 343 1.3E-96 T 18-10-2018 IPR024168 Catalase, SrpA-type, predicted RU84_10660 d193326f0995ae6aaa8824c8a148d405 354 SMART SM01060 20 354 4.9E-5 T 18-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10660 d193326f0995ae6aaa8824c8a148d405 354 Gene3D G3DSA:1.20.1280.120 55 336 3.8E-92 T 18-10-2018 RU84_07105 b1645e79e1b88ddb1e7c7b519903d128 216 Pfam PF01810 LysE type translocator 17 214 1.3E-38 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_07105 b1645e79e1b88ddb1e7c7b519903d128 216 PIRSF PIRSF006324 2 216 2.4E-48 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_08675 e9ead1e5d56668c875948f674bae5d03 428 SUPERFAMILY SSF103473 8 420 1.7E-68 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_08675 e9ead1e5d56668c875948f674bae5d03 428 Pfam PF00083 Sugar (and other) transporter 18 222 5.0E-26 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_08675 e9ead1e5d56668c875948f674bae5d03 428 Gene3D G3DSA:1.20.1250.20 11 423 1.5E-68 T 18-10-2018 RU84_08675 e9ead1e5d56668c875948f674bae5d03 428 ProSitePatterns PS00217 Sugar transport proteins signature 2. 125 150 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_08675 e9ead1e5d56668c875948f674bae5d03 428 Pfam PF07690 Major Facilitator Superfamily 261 422 1.1E-11 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_09710 48e2472c6d4c98019210a2f410b759ed 471 Gene3D G3DSA:1.10.4160.10 4 466 2.1E-46 T 18-10-2018 IPR038271 Purine-cytosine permease superfamily RU84_09710 48e2472c6d4c98019210a2f410b759ed 471 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 21 442 1.8E-50 T 18-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RU84_09710 48e2472c6d4c98019210a2f410b759ed 471 PIRSF PIRSF002744 1 468 5.7E-101 T 18-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 RU84_09990 b689c28eddc67e0b92863c2eebb8ca24 624 SUPERFAMILY SSF51338 5 536 3.17E-19 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_09990 b689c28eddc67e0b92863c2eebb8ca24 624 SUPERFAMILY SSF51556 62 494 2.22E-44 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_09990 b689c28eddc67e0b92863c2eebb8ca24 624 Gene3D G3DSA:3.10.310.70 82 192 3.7E-92 T 18-10-2018 RU84_09990 b689c28eddc67e0b92863c2eebb8ca24 624 Gene3D G3DSA:3.20.20.140 63 493 3.7E-92 T 18-10-2018 RU84_09990 b689c28eddc67e0b92863c2eebb8ca24 624 Pfam PF07969 Amidohydrolase family 51 534 5.6E-118 T 18-10-2018 IPR013108 Amidohydrolase 3 RU84_09990 b689c28eddc67e0b92863c2eebb8ca24 624 Gene3D G3DSA:2.30.40.10 10 509 3.7E-92 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_17485 c5dd016e2f2cf05f9432eb1b9fafcdaa 142 Pfam PF11162 Protein of unknown function (DUF2946) 13 139 7.3E-8 T 18-10-2018 IPR021333 Protein of unknown function DUF2946 RU84_11015 1884a9b8e97a0e0f69c2b25dcc84b7ab 401 SMART SM00052 143 389 2.6E-93 T 18-10-2018 IPR001633 EAL domain RU84_11015 1884a9b8e97a0e0f69c2b25dcc84b7ab 401 Pfam PF00563 EAL domain 150 383 2.3E-67 T 18-10-2018 IPR001633 EAL domain RU84_11015 1884a9b8e97a0e0f69c2b25dcc84b7ab 401 Gene3D G3DSA:3.20.20.450 145 399 1.9E-87 T 18-10-2018 IPR035919 EAL domain superfamily RU84_11015 1884a9b8e97a0e0f69c2b25dcc84b7ab 401 SUPERFAMILY SSF141868 148 393 2.62E-80 T 18-10-2018 IPR035919 EAL domain superfamily RU84_08815 0f539e6ab82cf92e35f617c804034b79 250 SUPERFAMILY SSF48613 19 242 5.04E-48 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_08815 0f539e6ab82cf92e35f617c804034b79 250 Pfam PF14518 Iron-containing redox enzyme 55 233 1.5E-21 T 18-10-2018 RU84_08815 0f539e6ab82cf92e35f617c804034b79 250 Gene3D G3DSA:1.20.910.10 1 249 1.2E-79 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_16025 e014fc9e3a6e7b5e2a743b33a1e3d1de 145 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 3.6E-18 T 18-10-2018 RU84_16025 e014fc9e3a6e7b5e2a743b33a1e3d1de 145 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 3.6E-18 T 18-10-2018 RU84_16025 e014fc9e3a6e7b5e2a743b33a1e3d1de 145 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 3.6E-18 T 18-10-2018 RU84_16025 e014fc9e3a6e7b5e2a743b33a1e3d1de 145 Pfam PF02416 mttA/Hcf106 family 4 52 2.0E-7 T 18-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RU84_16025 e014fc9e3a6e7b5e2a743b33a1e3d1de 145 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 138 15.017 T 18-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RU84_16025 e014fc9e3a6e7b5e2a743b33a1e3d1de 145 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 3 79 4.1E-20 T 18-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 Gene3D G3DSA:1.10.3730.40 182 338 2.8E-72 T 18-10-2018 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 45.023 T 18-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 1.0E-60 T 18-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 PIRSF PIRSF000116 201 333 2.2E-13 T 18-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 PIRSF PIRSF000116 2 203 1.5E-52 T 18-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 SUPERFAMILY SSF48179 183 332 3.57E-67 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 9.2E-76 T 18-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 2.1E-132 T 18-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 Gene3D G3DSA:3.40.50.720 1 181 2.9E-79 T 18-10-2018 RU84_15740 23ef058fbd111a5c8acc67e8fd79b1ab 338 SUPERFAMILY SSF51735 1 182 4.16E-75 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11880 31b63af4cda0179c8ecf9ce2c69ad296 206 Gene3D G3DSA:1.10.357.10 9 203 2.7E-18 T 18-10-2018 RU84_11880 31b63af4cda0179c8ecf9ce2c69ad296 206 SUPERFAMILY SSF46689 28 95 2.57E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_11880 31b63af4cda0179c8ecf9ce2c69ad296 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 36 79 5.6E-12 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_11880 31b63af4cda0179c8ecf9ce2c69ad296 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 56 79 3.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_11880 31b63af4cda0179c8ecf9ce2c69ad296 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 48 3.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 156 2.3E-21 T 18-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 Gene3D G3DSA:3.10.50.30 77 159 7.7E-30 T 18-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 25.864 T 18-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 158 3.9E-72 T 18-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 SUPERFAMILY SSF54534 80 156 2.75E-18 T 18-10-2018 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 Gene3D G3DSA:1.10.287.180 1 76 5.0E-29 T 18-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 7.2E-24 T 18-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 18-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 PIRSF PIRSF006092 1 158 1.5E-42 T 18-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 18-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 157 49.791 T 18-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 RU84_04215 10a9c62cd5383e8c589f7b8ab3dce432 164 SUPERFAMILY SSF46557 3 78 2.09E-25 T 18-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 RU84_10540 aa420fdce41185121b6e035df7dea172 395 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 25 385 7.8E-176 T 18-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RU84_10540 aa420fdce41185121b6e035df7dea172 395 PIRSF PIRSF000524 21 394 1.1E-56 T 18-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 RU84_10540 aa420fdce41185121b6e035df7dea172 395 Gene3D G3DSA:3.40.640.10 39 284 7.6E-113 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_10540 aa420fdce41185121b6e035df7dea172 395 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 29 383 7.1E-151 T 18-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RU84_10540 aa420fdce41185121b6e035df7dea172 395 Gene3D G3DSA:3.90.1150.10 31 375 7.6E-113 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_10540 aa420fdce41185121b6e035df7dea172 395 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 394 185.592 T 18-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 RU84_10540 aa420fdce41185121b6e035df7dea172 395 SUPERFAMILY SSF53383 26 385 8.66E-86 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_10540 aa420fdce41185121b6e035df7dea172 395 Pfam PF00266 Aminotransferase class-V 54 336 6.7E-32 T 18-10-2018 IPR000192 Aminotransferase class V domain RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 254 3.2E-55 T 18-10-2018 RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 SUPERFAMILY SSF51735 14 255 9.94E-73 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 Gene3D G3DSA:3.40.50.720 2 290 4.9E-79 T 18-10-2018 RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 4.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 4.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 4.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 4.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 4.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_02395 56eae56ee6377684e518f3687a7cbd45 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 4.3E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15725 1e03c958970ddd9660740f7e7dd0face 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 1.2E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_15725 1e03c958970ddd9660740f7e7dd0face 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 4.0E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_15725 1e03c958970ddd9660740f7e7dd0face 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.0E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_15725 1e03c958970ddd9660740f7e7dd0face 190 SUPERFAMILY SSF46689 3 78 1.23E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_15725 1e03c958970ddd9660740f7e7dd0face 190 Gene3D G3DSA:1.10.357.10 1 183 3.8E-36 T 18-10-2018 RU84_15725 1e03c958970ddd9660740f7e7dd0face 190 SUPERFAMILY SSF48498 73 157 6.43E-8 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 SMART SM00382 197 391 8.7E-8 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 Pfam PF00772 DnaB-like helicase N terminal domain 6 102 9.0E-23 T 18-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 SUPERFAMILY SSF48024 4 112 6.28E-24 T 18-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 Pfam PF03796 DnaB-like helicase C terminal domain 180 428 2.3E-71 T 18-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 Gene3D G3DSA:3.40.50.300 157 431 1.7E-78 T 18-10-2018 RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 SUPERFAMILY SSF52540 180 417 3.52E-39 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_14220 6c26e019fed52a55ea6f6c1adf2c97bd 441 Gene3D G3DSA:1.10.860.10 2 156 8.5E-27 T 18-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Gene3D G3DSA:3.40.50.620 4 377 5.5E-148 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Pfam PF01588 Putative tRNA binding domain 592 685 4.3E-24 T 18-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 544 38.994 T 18-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Gene3D G3DSA:2.20.28.20 138 172 5.5E-148 T 18-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 SUPERFAMILY SSF50249 585 686 5.14E-32 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Gene3D G3DSA:1.10.730.10 378 534 1.5E-34 T 18-10-2018 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 PRINTS PR01041 Methionyl-tRNA synthetase signature 248 259 7.9E-24 T 18-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 7.9E-24 T 18-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 7.9E-24 T 18-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 7.9E-24 T 18-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 7.9E-24 T 18-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 PRINTS PR01041 Methionyl-tRNA synthetase signature 382 393 7.9E-24 T 18-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 SUPERFAMILY SSF57770 138 172 3.01E-12 T 18-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Pfam PF09334 tRNA synthetases class I (M) 4 394 2.7E-150 T 18-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 559 686 7.6E-42 T 18-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 SUPERFAMILY SSF47323 388 546 1.85E-41 T 18-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 SUPERFAMILY SSF52374 3 385 3.33E-98 T 18-10-2018 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 4 533 1.6E-170 T 18-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Pfam PF08264 Anticodon-binding domain of tRNA 425 501 9.2E-6 T 18-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RU84_14645 aecf820a9046bc2340bf30b205ebd985 687 Gene3D G3DSA:2.40.50.140 578 687 2.0E-32 T 18-10-2018 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 SUPERFAMILY SSF55486 211 455 1.1E-71 T 18-10-2018 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Gene3D G3DSA:2.60.40.1730 22 200 4.2E-67 T 18-10-2018 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Gene3D G3DSA:2.60.40.1840 450 556 2.0E-25 T 18-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Gene3D G3DSA:1.10.390.10 286 449 6.6E-59 T 18-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily RU84_06930 7178db413b20bcad54889688b0f8faf7 868 SUPERFAMILY SSF63737 12 199 3.01E-40 T 18-10-2018 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 559 866 3.8E-72 T 18-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal RU84_06930 7178db413b20bcad54889688b0f8faf7 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 6.1E-9 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 6.1E-9 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 6.1E-9 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 6.1E-9 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Gene3D G3DSA:1.10.1740.60 201 285 4.2E-38 T 18-10-2018 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Pfam PF01433 Peptidase family M1 domain 214 443 4.1E-54 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 19 865 1.7E-302 T 18-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 450 555 1.4E-23 T 18-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold RU84_06930 7178db413b20bcad54889688b0f8faf7 868 Gene3D G3DSA:1.25.50.10 557 867 1.5E-72 T 18-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily RU84_15380 936a0b3af6946fc8a7fe02a88d3e425e 136 SMART SM00278 84 103 0.021 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_15380 936a0b3af6946fc8a7fe02a88d3e425e 136 SMART SM00278 114 133 92.0 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_15380 936a0b3af6946fc8a7fe02a88d3e425e 136 SUPERFAMILY SSF47781 73 133 6.67E-26 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_15380 936a0b3af6946fc8a7fe02a88d3e425e 136 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 74 135 1.2E-22 T 18-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain RU84_15380 936a0b3af6946fc8a7fe02a88d3e425e 136 Pfam PF12836 Helix-hairpin-helix motif 73 134 1.6E-21 T 18-10-2018 RU84_15380 936a0b3af6946fc8a7fe02a88d3e425e 136 Gene3D G3DSA:1.10.150.280 64 135 1.4E-21 T 18-10-2018 RU84_16810 cdd0504273f8e7dd0773393a85ec2872 146 SUPERFAMILY SSF53098 7 139 4.86E-35 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_16810 cdd0504273f8e7dd0773393a85ec2872 146 SMART SM00732 7 107 4.2E-27 T 18-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RU84_16810 cdd0504273f8e7dd0773393a85ec2872 146 Gene3D G3DSA:3.30.420.140 5 140 1.9E-35 T 18-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RU84_16810 cdd0504273f8e7dd0773393a85ec2872 146 Pfam PF03652 Holliday junction resolvase 8 138 3.3E-35 T 18-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RU84_16810 cdd0504273f8e7dd0773393a85ec2872 146 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 7 142 21.216 T 18-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RU84_16810 cdd0504273f8e7dd0773393a85ec2872 146 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 10 138 3.4E-34 T 18-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Pfam PF13184 NusA-like KH domain 235 301 1.2E-27 T 18-10-2018 IPR025249 KH domain, NusA-like GO:0003723 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SUPERFAMILY SSF69705 1 130 1.57E-32 T 18-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Pfam PF08529 NusA N-terminal domain 4 128 2.3E-34 T 18-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SUPERFAMILY SSF47794 427 493 3.45E-15 T 18-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Gene3D G3DSA:1.10.150.20 434 492 5.6E-22 T 18-10-2018 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SUPERFAMILY SSF50249 137 204 1.31E-15 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SUPERFAMILY SSF54814 206 283 1.24E-28 T 18-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Gene3D G3DSA:3.30.1480.10 1 133 6.8E-35 T 18-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 7.1E-109 T 18-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Gene3D G3DSA:3.30.300.20 204 282 3.0E-31 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SUPERFAMILY SSF47794 360 421 2.04E-9 T 18-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Pfam PF14520 Helix-hairpin-helix domain 435 490 1.7E-9 T 18-10-2018 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SUPERFAMILY SSF54814 284 345 3.07E-10 T 18-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Gene3D G3DSA:2.40.50.140 140 203 1.9E-15 T 18-10-2018 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Gene3D G3DSA:3.30.300.20 283 352 6.8E-20 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 SMART SM00316 138 203 9.9E-8 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 415 27.845 T 18-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 RU84_16725 31bf7c2cb6ad9a4c038471b56d45714d 494 Gene3D G3DSA:1.10.150.20 358 427 1.1E-15 T 18-10-2018 RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 SUPERFAMILY SSF52922 202 337 2.75E-42 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 Gene3D G3DSA:3.40.50.970 2 205 3.1E-82 T 18-10-2018 RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 Gene3D G3DSA:3.40.50.920 206 339 2.7E-45 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 Pfam PF02780 Transketolase, C-terminal domain 207 329 5.7E-41 T 18-10-2018 IPR033248 Transketolase, C-terminal domain RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 Pfam PF02779 Transketolase, pyrimidine binding domain 5 192 1.9E-55 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 SMART SM00861 4 193 3.6E-64 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_08795 6b40d8d56a2ed543b85b5ca735fd3e84 339 SUPERFAMILY SSF52518 4 205 7.5E-64 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_01550 109b439aeb5b464f7660a8490363f669 316 Gene3D G3DSA:3.40.50.11270 12 96 5.4E-114 T 18-10-2018 RU84_01550 109b439aeb5b464f7660a8490363f669 316 Gene3D G3DSA:3.40.1010.20 97 197 5.4E-114 T 18-10-2018 RU84_01550 109b439aeb5b464f7660a8490363f669 316 Gene3D G3DSA:3.40.1010.20 6 283 5.4E-114 T 18-10-2018 RU84_01550 109b439aeb5b464f7660a8490363f669 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.725 T 18-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RU84_01550 109b439aeb5b464f7660a8490363f669 316 Pfam PF02401 LytB protein 3 283 4.2E-95 T 18-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RU84_01550 109b439aeb5b464f7660a8490363f669 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 1.6E-101 T 18-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 RU84_15730 5efd450cbb57b0b249715de9813f1598 187 SUPERFAMILY SSF46689 13 74 4.87E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_15730 5efd450cbb57b0b249715de9813f1598 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 4.5E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_15730 5efd450cbb57b0b249715de9813f1598 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 4.5E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_15730 5efd450cbb57b0b249715de9813f1598 187 Gene3D G3DSA:1.10.357.10 9 180 2.1E-20 T 18-10-2018 RU84_15730 5efd450cbb57b0b249715de9813f1598 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 9.6E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Gene3D G3DSA:3.40.50.720 203 369 2.3E-68 T 18-10-2018 RU84_05575 19db49a2b80926ebd973574f678380d0 460 SUPERFAMILY SSF51735 197 373 3.29E-53 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05575 19db49a2b80926ebd973574f678380d0 460 SMART SM00997 197 372 5.0E-86 T 18-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 82 96 - T 18-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 10 147 2.6E-72 T 18-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 197 372 2.4E-58 T 18-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 219 235 - T 18-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Gene3D G3DSA:3.40.50.1480 370 460 4.2E-32 T 18-10-2018 RU84_05575 19db49a2b80926ebd973574f678380d0 460 PIRSF PIRSF001109 1 460 4.2E-180 T 18-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 SUPERFAMILY SSF52283 8 460 9.07E-110 T 18-10-2018 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Gene3D G3DSA:3.40.50.1480 150 202 1.6E-19 T 18-10-2018 RU84_05575 19db49a2b80926ebd973574f678380d0 460 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 11 452 1.7E-158 T 18-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 SMART SM00996 10 459 1.1E-277 T 18-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 6 452 45.471 T 18-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 RU84_05575 19db49a2b80926ebd973574f678380d0 460 Gene3D G3DSA:3.40.50.1480 1 149 1.7E-69 T 18-10-2018 RU84_09455 4698fcd37bd242cd2b12154985cc2d24 337 Gene3D G3DSA:3.30.200.20 1 92 4.8E-25 T 18-10-2018 RU84_09455 4698fcd37bd242cd2b12154985cc2d24 337 Pfam PF01636 Phosphotransferase enzyme family 26 247 1.1E-24 T 18-10-2018 IPR002575 Aminoglycoside phosphotransferase RU84_09455 4698fcd37bd242cd2b12154985cc2d24 337 SUPERFAMILY SSF56112 9 307 1.73E-43 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_09455 4698fcd37bd242cd2b12154985cc2d24 337 Gene3D G3DSA:3.90.1200.10 93 330 2.2E-65 T 18-10-2018 RU84_07275 0e888749235e13957cd72f13827433d7 442 Pfam PF11799 impB/mucB/samB family C-terminal domain 254 363 2.1E-6 T 18-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_07275 0e888749235e13957cd72f13827433d7 442 Pfam PF13438 Domain of unknown function (DUF4113) 381 431 1.8E-12 T 18-10-2018 IPR025188 Domain of unknown function DUF4113 RU84_07275 0e888749235e13957cd72f13827433d7 442 SUPERFAMILY SSF56672 9 248 8.9E-59 T 18-10-2018 RU84_07275 0e888749235e13957cd72f13827433d7 442 Gene3D G3DSA:2.30.40.20 18 81 1.5E-37 T 18-10-2018 RU84_07275 0e888749235e13957cd72f13827433d7 442 Gene3D G3DSA:3.30.70.270 12 165 1.5E-37 T 18-10-2018 RU84_07275 0e888749235e13957cd72f13827433d7 442 Pfam PF00817 impB/mucB/samB family 13 160 4.9E-32 T 18-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_07275 0e888749235e13957cd72f13827433d7 442 Gene3D G3DSA:1.10.150.20 180 243 1.3E-6 T 18-10-2018 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 Gene3D G3DSA:3.40.630.10 3 243 1.1E-58 T 18-10-2018 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 Pfam PF01546 Peptidase family M20/M25/M40 74 482 2.9E-19 T 18-10-2018 IPR002933 Peptidase M20 GO:0016787 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PIRSF PIRSF016599 3 486 6.4E-185 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 SUPERFAMILY SSF53187 14 483 1.86E-61 T 18-10-2018 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 Pfam PF07687 Peptidase dimerisation domain 212 293 9.3E-6 T 18-10-2018 IPR011650 Peptidase M20, dimerisation domain RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 Gene3D G3DSA:3.40.630.10 374 486 4.9E-21 T 18-10-2018 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 82 101 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 431 447 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 103 121 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 161 179 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 453 475 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 253 272 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 366 384 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 137 154 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 PRINTS PR00934 X-His dipeptidase (M25) signature 208 225 1.5E-67 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_05890 710fc63861fd0fc8d9b69dbc930db7d8 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 10 485 6.0E-158 T 18-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Gene3D G3DSA:2.120.10.90 501 736 1.3E-13 T 18-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 736 32.983 T 18-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 SUPERFAMILY SSF101904 498 735 8.89E-46 T 18-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Gene3D G3DSA:3.30.1360.40 239 332 2.3E-175 T 18-10-2018 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 621 4.1 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 689 7.0E-6 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Gene3D G3DSA:1.10.268.10 370 455 2.3E-175 T 18-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Gene3D G3DSA:3.90.199.10 33 484 2.3E-175 T 18-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 SUPERFAMILY SSF56719 32 484 2.75E-153 T 18-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 SMART SM00434 12 462 4.0E-219 T 18-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 5.5E-135 T 18-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_17345 0cefdf9fc38418ca4c5bb02898c62d29 739 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 735 3.3E-303 T 18-10-2018 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 SMART SM00342 194 276 1.5E-27 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 Gene3D G3DSA:1.10.10.60 182 236 6.5E-15 T 18-10-2018 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 276 3.0E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 260 3.0E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 SUPERFAMILY SSF46689 231 276 2.8E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 Gene3D G3DSA:1.10.10.60 237 281 2.5E-12 T 18-10-2018 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 SUPERFAMILY SSF51215 8 163 2.62E-15 T 18-10-2018 IPR037923 Transcription regulator HTH-like RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 Pfam PF12833 Helix-turn-helix domain 200 276 7.0E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 SUPERFAMILY SSF46689 194 227 8.78E-5 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 Pfam PF02311 AraC-like ligand binding domain 25 108 1.1E-11 T 18-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RU84_09895 b5c6e6a0f4fc92408185e7ce141b11d7 281 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 231 272 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 PRINTS PR00834 HtrA/DegQ protease family signature 297 309 9.7E-48 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 PRINTS PR00834 HtrA/DegQ protease family signature 211 228 9.7E-48 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 PRINTS PR00834 HtrA/DegQ protease family signature 189 206 9.7E-48 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 PRINTS PR00834 HtrA/DegQ protease family signature 115 135 9.7E-48 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 PRINTS PR00834 HtrA/DegQ protease family signature 155 179 9.7E-48 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 PRINTS PR00834 HtrA/DegQ protease family signature 94 106 9.7E-48 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 SMART SM00228 368 448 1.8E-8 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 SMART SM00228 257 339 4.3E-15 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 SUPERFAMILY SSF50156 238 347 2.16E-23 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 SUPERFAMILY SSF50156 367 455 3.29E-13 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 27 452 1.5E-137 T 18-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 SUPERFAMILY SSF50494 1 266 1.35E-62 T 18-10-2018 IPR009003 Peptidase S1, PA clan RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 Pfam PF13365 Trypsin-like peptidase domain 85 218 3.2E-34 T 18-10-2018 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 Pfam PF13180 PDZ domain 258 348 6.9E-19 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 Pfam PF13180 PDZ domain 368 451 4.1E-8 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 Gene3D G3DSA:2.30.42.10 365 458 5.2E-13 T 18-10-2018 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 Gene3D G3DSA:2.30.42.10 252 355 3.8E-30 T 18-10-2018 RU84_04720 8e242d32aedf4b497234f0e955b0b7be 458 Gene3D G3DSA:2.40.10.120 26 250 2.4E-75 T 18-10-2018 RU84_04290 06874593b91768866a500759ad57e57c 385 Pfam PF02595 Glycerate kinase family 3 374 1.6E-141 T 18-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RU84_04290 06874593b91768866a500759ad57e57c 385 Gene3D G3DSA:3.90.1510.10 42 276 6.3E-137 T 18-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 RU84_04290 06874593b91768866a500759ad57e57c 385 Gene3D G3DSA:3.40.50.10350 1 362 6.3E-137 T 18-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold RU84_04290 06874593b91768866a500759ad57e57c 385 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 5.8E-145 T 18-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RU84_04290 06874593b91768866a500759ad57e57c 385 SUPERFAMILY SSF110738 1 375 6.02E-131 T 18-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 RU84_04290 06874593b91768866a500759ad57e57c 385 PIRSF PIRSF006078 1 378 1.5E-133 T 18-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 524 682 1.3E-22 T 18-10-2018 IPR000160 GGDEF domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SMART SM00267 512 684 3.0E-31 T 18-10-2018 IPR000160 GGDEF domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Pfam PF08447 PAS fold 313 380 8.7E-14 T 18-10-2018 IPR013655 PAS fold-3 GO:0005515 RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Pfam PF00563 EAL domain 699 933 1.0E-72 T 18-10-2018 IPR001633 EAL domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SUPERFAMILY SSF55785 314 390 8.55E-12 T 18-10-2018 IPR035965 PAS domain superfamily RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SMART SM00052 693 938 2.2E-102 T 18-10-2018 IPR001633 EAL domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SUPERFAMILY SSF141868 698 945 7.45E-85 T 18-10-2018 IPR035919 EAL domain superfamily RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SMART SM00086 470 512 0.045 T 18-10-2018 IPR001610 PAC motif RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SMART SM00086 344 388 1.5E-5 T 18-10-2018 IPR001610 PAC motif RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Gene3D G3DSA:3.20.20.450 697 947 2.2E-95 T 18-10-2018 IPR035919 EAL domain superfamily RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SUPERFAMILY SSF55073 528 684 2.9E-33 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Gene3D G3DSA:3.30.450.20 284 392 5.2E-18 T 18-10-2018 RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Gene3D G3DSA:3.30.70.270 517 696 1.3E-38 T 18-10-2018 RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SUPERFAMILY SSF55785 407 519 1.92E-15 T 18-10-2018 IPR035965 PAS domain superfamily RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 SMART SM00091 396 464 9.8E-4 T 18-10-2018 IPR000014 PAS domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Pfam PF00989 PAS fold 401 508 4.7E-10 T 18-10-2018 IPR013767 PAS fold GO:0006355 RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 401 519 7.5E-15 T 18-10-2018 IPR000014 PAS domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 314 395 1.2E-7 T 18-10-2018 IPR000014 PAS domain RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Gene3D G3DSA:3.30.450.20 393 514 2.5E-20 T 18-10-2018 RU84_05560 9a0fb3f2f2e448322221fd95c10bec90 949 Pfam PF00990 Diguanylate cyclase, GGDEF domain 524 679 7.3E-31 T 18-10-2018 IPR000160 GGDEF domain RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 Pfam PF07690 Major Facilitator Superfamily 13 401 4.6E-43 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 SUPERFAMILY SSF103473 3 489 4.32E-61 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 Gene3D G3DSA:1.20.1720.10 6 238 1.8E-39 T 18-10-2018 RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 157 181 9.7E-12 T 18-10-2018 RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 132 156 9.7E-12 T 18-10-2018 RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 218 236 9.7E-12 T 18-10-2018 RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 392 411 9.7E-12 T 18-10-2018 RU84_07150 f98b0d3b19fef46f880fda915838ac74 492 PRINTS PR01036 Tetracycline resistance protein TetB signature 70 92 9.7E-12 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SUPERFAMILY SSF52113 596 670 1.0E-17 T 18-10-2018 IPR036420 BRCT domain superfamily RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Pfam PF12826 Helix-hairpin-helix motif 515 577 1.1E-20 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 PIRSF PIRSF001604 1 674 2.2E-245 T 18-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 667 4.9E-12 T 18-10-2018 IPR001357 BRCT domain RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:3.30.470.90 73 320 7.4E-100 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SUPERFAMILY SSF47781 407 588 2.45E-59 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:2.20.70.80 396 433 1.4E-12 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Pfam PF14520 Helix-hairpin-helix domain 449 505 0.0016 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 116 145 - T 18-10-2018 IPR018239 NAD-dependent DNA ligase, active site RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:2.40.50.140 321 393 8.1E-33 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SMART SM00292 596 673 1.2E-9 T 18-10-2018 IPR001357 BRCT domain RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Hamap MF_01588 DNA ligase [ligA]. 4 670 51.081 T 18-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SMART SM00278 449 468 790.0 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SMART SM00278 517 536 13.0 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SMART SM00278 485 504 4.6 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SMART SM00278 549 568 400.0 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SUPERFAMILY SSF56091 4 319 2.47E-117 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 325 400 2.1E-32 T 18-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 321 9.8E-129 T 18-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:3.40.50.10190 590 671 5.1E-26 T 18-10-2018 IPR036420 BRCT domain superfamily RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:1.10.150.20 511 589 3.9E-27 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 334 349 - T 18-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 411 437 3.0E-7 T 18-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 665 1.9E-250 T 18-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:1.10.150.20 435 510 1.7E-27 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SUPERFAMILY SSF50249 321 402 7.71E-27 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 Gene3D G3DSA:1.10.287.610 1 72 9.0E-27 T 18-10-2018 RU84_14535 4a5009669aa31d74111a2effc0c4bf1e 678 SMART SM00532 5 451 1.4E-249 T 18-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 SUPERFAMILY SSF52540 2 183 1.34E-66 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 SMART SM00072 2 184 3.5E-63 T 18-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 Gene3D G3DSA:3.40.50.300 7 180 5.7E-66 T 18-10-2018 RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 Gene3D G3DSA:3.30.63.10 34 93 5.7E-66 T 18-10-2018 RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 35.584 T 18-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 ProSitePatterns PS00856 Guanylate kinase-like signature. 37 54 - T 18-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 1.0E-73 T 18-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 RU84_01545 f967cf2a7779f5cea4c8fb591fc17edd 209 Pfam PF00625 Guanylate kinase 6 182 3.4E-52 T 18-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RU84_03775 72a2bce94b45fb58f41cea5511bf7256 144 Gene3D G3DSA:3.30.110.70 47 144 1.8E-26 T 18-10-2018 RU84_03775 72a2bce94b45fb58f41cea5511bf7256 144 SUPERFAMILY SSF117782 57 143 3.53E-26 T 18-10-2018 IPR035439 UPF0145 domain superfamily RU84_03775 72a2bce94b45fb58f41cea5511bf7256 144 Pfam PF01906 Putative heavy-metal-binding 58 143 1.1E-25 T 18-10-2018 IPR002765 Uncharacterised protein family UPF0145 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 Pfam PF00221 Aromatic amino acid lyase 10 469 2.2E-187 T 18-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 SUPERFAMILY SSF48557 3 505 7.22E-194 T 18-10-2018 IPR008948 L-Aspartase-like GO:0003824 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 Gene3D G3DSA:1.20.200.10 197 508 3.7E-128 T 18-10-2018 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 500 2.3E-221 T 18-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 2 503 45.011 T 18-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 138 154 - T 18-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 RU84_00390 eade1574ca963677783f82ba3d4866a9 512 Gene3D G3DSA:1.10.275.10 1 196 1.5E-69 T 18-10-2018 IPR024083 Fumarase/histidase, N-terminal RU84_18370 3eabb94b703e0d0d2b9bd4c0a036b8a0 175 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 1.3E-68 T 18-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 RU84_18370 3eabb94b703e0d0d2b9bd4c0a036b8a0 175 Pfam PF00156 Phosphoribosyl transferase domain 13 160 3.8E-25 T 18-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RU84_18370 3eabb94b703e0d0d2b9bd4c0a036b8a0 175 SUPERFAMILY SSF53271 7 173 2.62E-53 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_18370 3eabb94b703e0d0d2b9bd4c0a036b8a0 175 Gene3D G3DSA:3.40.50.2020 2 175 3.7E-64 T 18-10-2018 RU84_18855 eadf7a9766efa1206bbee73a517047f2 216 SUPERFAMILY SSF110849 5 100 1.22E-25 T 18-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RU84_18855 eadf7a9766efa1206bbee73a517047f2 216 Gene3D G3DSA:3.90.1530.30 21 77 6.5E-8 T 18-10-2018 RU84_18855 eadf7a9766efa1206bbee73a517047f2 216 Pfam PF02195 ParB-like nuclease domain 12 92 2.5E-13 T 18-10-2018 IPR003115 ParB/Sulfiredoxin RU84_18855 eadf7a9766efa1206bbee73a517047f2 216 SMART SM00470 7 93 1.4E-16 T 18-10-2018 IPR003115 ParB/Sulfiredoxin RU84_04200 cd03f7c1fc97a9b0335b268dd0be8057 301 Gene3D G3DSA:3.40.50.620 21 271 2.4E-46 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_04200 cd03f7c1fc97a9b0335b268dd0be8057 301 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 17 279 55.535 T 18-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 RU84_04200 cd03f7c1fc97a9b0335b268dd0be8057 301 PIRSF PIRSF004976 5 289 4.7E-70 T 18-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 RU84_04200 cd03f7c1fc97a9b0335b268dd0be8057 301 Pfam PF01171 PP-loop family 49 212 2.7E-15 T 18-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 RU84_04200 cd03f7c1fc97a9b0335b268dd0be8057 301 SUPERFAMILY SSF52402 26 244 1.61E-54 T 18-10-2018 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 SUPERFAMILY SSF56645 36 280 8.51E-62 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 3.9E-7 T 18-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Gene3D G3DSA:1.10.540.10 34 159 2.3E-21 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 457 8.7E-21 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Gene3D G3DSA:1.20.140.10 288 464 3.6E-41 T 18-10-2018 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Gene3D G3DSA:2.40.110.10 161 287 1.1E-29 T 18-10-2018 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 2.0E-18 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 472 599 4.2E-31 T 18-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 SUPERFAMILY SSF47203 287 475 1.53E-45 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_01850 084527fc359e99d07d8bfbeed5a8abf0 607 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 157 7.1E-18 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_12760 159605a06267b03560cce487e72056a0 509 SUPERFAMILY SSF55681 164 505 8.16E-115 T 18-10-2018 RU84_12760 159605a06267b03560cce487e72056a0 509 PRINTS PR00982 Lysyl-tRNA synthetase signature 264 281 5.5E-38 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 PRINTS PR00982 Lysyl-tRNA synthetase signature 217 233 5.5E-38 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 PRINTS PR00982 Lysyl-tRNA synthetase signature 246 259 5.5E-38 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 PRINTS PR00982 Lysyl-tRNA synthetase signature 201 211 5.5E-38 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 PRINTS PR00982 Lysyl-tRNA synthetase signature 389 405 5.5E-38 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 20 506 1.3E-197 T 18-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 Pfam PF00152 tRNA synthetases class II (D, K and N) 165 504 4.8E-79 T 18-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_12760 159605a06267b03560cce487e72056a0 509 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 507 43.547 T 18-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_12760 159605a06267b03560cce487e72056a0 509 Gene3D G3DSA:3.30.930.10 160 509 4.0E-127 T 18-10-2018 RU84_12760 159605a06267b03560cce487e72056a0 509 Gene3D G3DSA:2.40.50.140 8 159 1.0E-32 T 18-10-2018 RU84_12760 159605a06267b03560cce487e72056a0 509 Pfam PF01336 OB-fold nucleic acid binding domain 75 148 2.9E-9 T 18-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RU84_12760 159605a06267b03560cce487e72056a0 509 SUPERFAMILY SSF50249 15 157 3.18E-32 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_04470 082302840136689da53b65be10061514 269 Gene3D G3DSA:3.40.50.1820 2 268 1.8E-43 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_04470 082302840136689da53b65be10061514 269 SUPERFAMILY SSF53474 4 264 1.1E-26 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_04470 082302840136689da53b65be10061514 269 Pfam PF12697 Alpha/beta hydrolase family 50 257 5.7E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 Gene3D G3DSA:1.10.10.60 248 296 5.5E-13 T 18-10-2018 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 Pfam PF12833 Helix-turn-helix domain 219 293 7.8E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 Gene3D G3DSA:1.10.10.60 195 247 5.2E-11 T 18-10-2018 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 250 292 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 SMART SM00342 213 296 3.1E-28 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 SUPERFAMILY SSF46689 250 293 8.06E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 SUPERFAMILY SSF46689 198 246 3.16E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03640 4034c78e69a4ec8dc26e7a3d6e4d287c 297 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 180 4.3E-32 T 18-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 141 155 - T 18-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 SUPERFAMILY SSF55174 21 72 8.51E-10 T 18-10-2018 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 307 2.0E-80 T 18-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 Pfam PF01479 S4 domain 22 68 2.7E-10 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 Gene3D G3DSA:3.30.2350.10 95 310 3.1E-68 T 18-10-2018 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 Pfam PF00849 RNA pseudouridylate synthase 104 248 4.3E-30 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 SUPERFAMILY SSF55120 96 307 3.04E-59 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 Gene3D G3DSA:3.10.290.10 10 77 3.8E-19 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_16345 ebb2dce1ddeec1a198acbf3a2ed849fa 310 SMART SM00363 22 77 1.5E-8 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 Pfam PF00122 E1-E2 ATPase 267 445 6.0E-55 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 Gene3D G3DSA:3.40.50.1000 450 720 1.1E-87 T 18-10-2018 IPR023214 HAD superfamily RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 471 477 - T 18-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 Pfam PF04945 YHS domain 15 57 7.2E-10 T 18-10-2018 IPR007029 YHS domain RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 SUPERFAMILY SSF81653 273 367 1.31E-26 T 18-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 239 746 6.9E-91 T 18-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 SUPERFAMILY SSF56784 467 775 2.36E-53 T 18-10-2018 IPR036412 HAD-like superfamily RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 194 777 1.0E-185 T 18-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 175 778 2.6E-178 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 SUPERFAMILY SSF81665 237 754 1.57E-12 T 18-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 SMART SM00746 16 53 5.3E-7 T 18-10-2018 IPR011017 TRASH domain RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00943 Copper-transporting ATPase signature 256 274 1.0E-14 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00943 Copper-transporting ATPase signature 452 467 1.0E-14 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00943 Copper-transporting ATPase signature 390 404 1.0E-14 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00943 Copper-transporting ATPase signature 179 198 1.0E-14 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00943 Copper-transporting ATPase signature 645 662 1.0E-14 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00943 Copper-transporting ATPase signature 741 755 1.0E-14 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 Gene3D G3DSA:3.40.1110.10 480 600 1.1E-87 T 18-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 593 604 2.1E-28 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 317 331 2.1E-28 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 668 687 2.1E-28 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 483 2.1E-28 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 691 703 2.1E-28 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 625 2.1E-28 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 Pfam PF00702 haloacid dehalogenase-like hydrolase 465 682 1.6E-39 T 18-10-2018 RU84_15600 72ed126c5a7792396e3087b34b6e20d4 779 Gene3D G3DSA:2.70.150.20 260 372 4.6E-43 T 18-10-2018 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Gene3D G3DSA:3.30.830.10 715 915 1.3E-35 T 18-10-2018 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 SUPERFAMILY SSF63411 31 247 1.07E-50 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Gene3D G3DSA:3.30.830.10 501 713 2.4E-27 T 18-10-2018 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Gene3D G3DSA:3.30.830.10 29 252 5.8E-55 T 18-10-2018 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Pfam PF00675 Insulinase (Peptidase family M16) 63 188 5.0E-17 T 18-10-2018 IPR011765 Peptidase M16, N-terminal RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 SUPERFAMILY SSF63411 488 716 9.25E-33 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 SUPERFAMILY SSF63411 261 431 8.5E-16 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 65 88 - T 18-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Gene3D G3DSA:3.30.830.10 262 453 8.1E-21 T 18-10-2018 RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Pfam PF05193 Peptidase M16 inactive domain 666 845 8.5E-25 T 18-10-2018 IPR007863 Peptidase M16, C-terminal RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 Pfam PF05193 Peptidase M16 inactive domain 202 372 2.2E-17 T 18-10-2018 IPR007863 Peptidase M16, C-terminal RU84_05000 5d01d566c4e07d5a04485027dcf37444 920 SUPERFAMILY SSF63411 748 913 1.67E-26 T 18-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 438 1.3E-14 T 18-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Gene3D G3DSA:3.40.120.10 257 336 1.2E-66 T 18-10-2018 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 SUPERFAMILY SSF55957 355 441 6.54E-23 T 18-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 4.5E-14 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 4.5E-14 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 4.5E-14 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 18-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Gene3D G3DSA:3.30.310.50 367 444 5.0E-24 T 18-10-2018 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 46.65 T 18-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 SUPERFAMILY SSF53738 156 257 3.02E-33 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 439 1.1E-186 T 18-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 SUPERFAMILY SSF53738 2 181 3.14E-47 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 SUPERFAMILY SSF53738 258 363 1.41E-28 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 252 2.3E-19 T 18-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Gene3D G3DSA:3.40.120.10 1 154 8.1E-46 T 18-10-2018 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 363 3.8E-32 T 18-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 136 7.4E-41 T 18-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_00810 3d31a7e865ab908c821c68f46c8e4cae 445 Gene3D G3DSA:3.40.120.10 175 359 1.2E-66 T 18-10-2018 RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 SUPERFAMILY SSF54826 4 126 1.62E-32 T 18-10-2018 RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 Gene3D G3DSA:3.20.20.120 118 353 1.0E-117 T 18-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 191 222 - T 18-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 4 368 3.8E-185 T 18-10-2018 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 Gene3D G3DSA:3.30.390.10 28 365 1.0E-117 T 18-10-2018 IPR029017 Enolase-like, N-terminal RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 Pfam PF13378 Enolase C-terminal domain-like 148 361 7.1E-42 T 18-10-2018 IPR029065 Enolase C-terminal domain-like RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 SUPERFAMILY SSF51604 113 367 2.75E-64 T 18-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 5 125 8.2E-32 T 18-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain RU84_08135 e8ca660ccc4bfb9ae1a4de662275a24a 368 SMART SM00922 144 241 3.3E-19 T 18-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal RU84_01535 e487c039b5b61cb197065aae891f3853 701 Gene3D G3DSA:3.10.20.30 375 445 2.9E-21 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_01535 e487c039b5b61cb197065aae891f3853 701 SMART SM00471 47 157 2.4E-10 T 18-10-2018 IPR003607 HD/PDEase domain RU84_01535 e487c039b5b61cb197065aae891f3853 701 Pfam PF02824 TGS domain 381 440 7.5E-16 T 18-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RU84_01535 e487c039b5b61cb197065aae891f3853 701 Gene3D G3DSA:3.30.460.10 197 325 1.4E-6 T 18-10-2018 RU84_01535 e487c039b5b61cb197065aae891f3853 701 Pfam PF13328 HD domain 32 178 2.7E-37 T 18-10-2018 IPR003607 HD/PDEase domain RU84_01535 e487c039b5b61cb197065aae891f3853 701 SUPERFAMILY SSF109604 16 194 9.42E-60 T 18-10-2018 RU84_01535 e487c039b5b61cb197065aae891f3853 701 SUPERFAMILY SSF81271 381 440 5.23E-14 T 18-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RU84_01535 e487c039b5b61cb197065aae891f3853 701 Gene3D G3DSA:1.10.3210.10 3 194 4.1E-65 T 18-10-2018 RU84_01535 e487c039b5b61cb197065aae891f3853 701 SUPERFAMILY SSF81301 201 354 2.29E-18 T 18-10-2018 RU84_01535 e487c039b5b61cb197065aae891f3853 701 SMART SM00954 235 345 7.7E-6 T 18-10-2018 IPR007685 RelA/SpoT GO:0015969 RU84_14335 e850df76f698dd16afdd4b862003021d 350 Pfam PF00849 RNA pseudouridylate synthase 123 272 3.6E-30 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_14335 e850df76f698dd16afdd4b862003021d 350 SUPERFAMILY SSF55120 108 345 8.63E-75 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_14335 e850df76f698dd16afdd4b862003021d 350 Gene3D G3DSA:3.10.290.10 34 107 1.9E-16 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_14335 e850df76f698dd16afdd4b862003021d 350 Pfam PF01479 S4 domain 62 95 1.6E-6 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_14335 e850df76f698dd16afdd4b862003021d 350 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 166 180 - T 18-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_14335 e850df76f698dd16afdd4b862003021d 350 Gene3D G3DSA:3.30.2350.10 116 347 1.9E-68 T 18-10-2018 RU84_14335 e850df76f698dd16afdd4b862003021d 350 SMART SM00363 50 107 1.0E-4 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_14335 e850df76f698dd16afdd4b862003021d 350 SUPERFAMILY SSF55174 47 136 1.51E-9 T 18-10-2018 RU84_14335 e850df76f698dd16afdd4b862003021d 350 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 48 344 4.4E-91 T 18-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Pfam PF11791 Aconitate B N-terminal domain 4 156 1.7E-66 T 18-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 SUPERFAMILY SSF52016 162 374 4.32E-65 T 18-10-2018 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Pfam PF00330 Aconitase family (aconitate hydratase) 477 827 6.5E-39 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Gene3D G3DSA:1.25.40.310 1 160 2.4E-67 T 18-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 PIRSF PIRSF036687 1 868 0.0 T 18-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Gene3D G3DSA:3.30.499.10 407 534 1.5E-145 T 18-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 862 0.0 T 18-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Gene3D G3DSA:3.20.19.10 162 363 1.2E-72 T 18-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 ProSitePatterns PS01244 Aconitase family signature 2. 770 783 - T 18-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 384 3.0E-92 T 18-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 ProSitePatterns PS00450 Aconitase family signature 1. 710 727 - T 18-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 SUPERFAMILY SSF53732 381 865 4.19E-144 T 18-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Gene3D G3DSA:3.40.1060.10 387 689 1.5E-145 T 18-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 Gene3D G3DSA:3.30.499.10 691 874 1.1E-67 T 18-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RU84_06755 f3cc4b08b42d77dcf1e9c3a4589172ea 879 SUPERFAMILY SSF74778 2 159 1.01E-67 T 18-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 RU84_07265 10eb8042ec03252beede5c11ddc49926 139 SUPERFAMILY SSF51230 66 136 5.5E-22 T 18-10-2018 IPR011053 Single hybrid motif RU84_07265 10eb8042ec03252beede5c11ddc49926 139 Gene3D G3DSA:2.40.50.100 62 136 6.3E-28 T 18-10-2018 RU84_07265 10eb8042ec03252beede5c11ddc49926 139 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 136 7.5E-38 T 18-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RU84_07265 10eb8042ec03252beede5c11ddc49926 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 84 98 9.3E-15 T 18-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RU84_07265 10eb8042ec03252beede5c11ddc49926 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 67 80 9.3E-15 T 18-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RU84_07265 10eb8042ec03252beede5c11ddc49926 139 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 112 9.3E-15 T 18-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 RU84_07265 10eb8042ec03252beede5c11ddc49926 139 Pfam PF00364 Biotin-requiring enzyme 66 136 3.2E-21 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_11045 ad915208a0e2d3e46d17288f7ce7949b 233 Gene3D G3DSA:3.30.1380.10 87 224 1.2E-5 T 18-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_11045 ad915208a0e2d3e46d17288f7ce7949b 233 Pfam PF08291 Peptidase M15 133 170 1.2E-5 T 18-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 RU84_11045 ad915208a0e2d3e46d17288f7ce7949b 233 SUPERFAMILY SSF55166 96 226 1.18E-15 T 18-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_07950 4da8f2faea919486ef719a2dca4bfd49 209 Gene3D G3DSA:2.60.130.10 1 209 2.9E-85 T 18-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RU84_07950 4da8f2faea919486ef719a2dca4bfd49 209 SUPERFAMILY SSF49482 9 209 2.35E-62 T 18-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RU84_07950 4da8f2faea919486ef719a2dca4bfd49 209 Pfam PF00775 Dioxygenase 43 199 1.6E-19 T 18-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RU84_07950 4da8f2faea919486ef719a2dca4bfd49 209 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 55 83 - T 18-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RU84_07950 4da8f2faea919486ef719a2dca4bfd49 209 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 12 209 5.5E-85 T 18-10-2018 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 RU84_17360 6e1f503ff12482cd437031985682d7dd 155 Pfam PF02810 SEC-C motif 135 152 2.4E-8 T 18-10-2018 IPR004027 SEC-C motif RU84_17360 6e1f503ff12482cd437031985682d7dd 155 Gene3D G3DSA:3.10.450.50 1 155 2.0E-57 T 18-10-2018 RU84_17360 6e1f503ff12482cd437031985682d7dd 155 SUPERFAMILY SSF103642 131 154 2.75E-8 T 18-10-2018 RU84_17360 6e1f503ff12482cd437031985682d7dd 155 SUPERFAMILY SSF54427 26 129 1.05E-33 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_09170 134cc018c872972713a0fa49d341aee9 112 Gene3D G3DSA:3.10.20.30 1 112 3.4E-33 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_09170 134cc018c872972713a0fa49d341aee9 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 9.5E-11 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_09170 134cc018c872972713a0fa49d341aee9 112 PRINTS PR00355 Adrenodoxin signature 42 52 5.2E-9 T 18-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RU84_09170 134cc018c872972713a0fa49d341aee9 112 PRINTS PR00355 Adrenodoxin signature 83 91 5.2E-9 T 18-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RU84_09170 134cc018c872972713a0fa49d341aee9 112 PRINTS PR00355 Adrenodoxin signature 60 74 5.2E-9 T 18-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RU84_09170 134cc018c872972713a0fa49d341aee9 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 3.7E-53 T 18-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 RU84_09170 134cc018c872972713a0fa49d341aee9 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 18-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 RU84_09170 134cc018c872972713a0fa49d341aee9 112 SUPERFAMILY SSF54292 6 108 1.76E-28 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_15840 13f30e9087e783d8f44b514e85b69489 232 Gene3D G3DSA:1.25.40.10 46 198 4.4E-8 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_15840 13f30e9087e783d8f44b514e85b69489 232 SUPERFAMILY SSF48452 93 192 3.21E-6 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_15840 13f30e9087e783d8f44b514e85b69489 232 Pfam PF09976 Tetratricopeptide repeat-like domain 13 212 9.5E-44 T 18-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 RU84_15840 13f30e9087e783d8f44b514e85b69489 232 PIRSF PIRSF006170 1 217 2.5E-63 T 18-10-2018 IPR026039 Uncharacterised protein family UPF0070 RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 SUPERFAMILY SSF52540 210 461 1.89E-48 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 31 470 1.9E-164 T 18-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 Gene3D G3DSA:3.40.50.300 189 475 6.2E-103 T 18-10-2018 RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 Pfam PF00772 DnaB-like helicase N terminal domain 31 133 1.2E-28 T 18-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 Gene3D G3DSA:1.10.860.10 23 187 2.7E-43 T 18-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 Pfam PF03796 DnaB-like helicase C terminal domain 212 468 6.9E-109 T 18-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RU84_06530 576dab398359f2a441be8a6dbf1aa8d5 481 SUPERFAMILY SSF48024 29 141 8.11E-30 T 18-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RU84_10460 45c111d9bfb40dbe57083b5fa212c5f6 222 SUPERFAMILY SSF100950 2 220 1.26E-76 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_10460 45c111d9bfb40dbe57083b5fa212c5f6 222 Gene3D G3DSA:3.40.1080.10 1 221 7.9E-78 T 18-10-2018 RU84_10460 45c111d9bfb40dbe57083b5fa212c5f6 222 SMART SM00882 6 219 1.3E-72 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_10460 45c111d9bfb40dbe57083b5fa212c5f6 222 Pfam PF01144 Coenzyme A transferase 14 218 9.8E-67 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_10460 45c111d9bfb40dbe57083b5fa212c5f6 222 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 221 3.0E-116 T 18-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 SUPERFAMILY SSF64484 11 1361 0.0 T 18-10-2018 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF00562 RNA polymerase Rpb2, domain 6 726 1283 1.8E-159 T 18-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1084 1096 - T 18-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1361 12.317 T 18-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:3.90.1100.10 657 722 4.1E-21 T 18-10-2018 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:3.90.1110.10 320 450 6.4E-33 T 18-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF04565 RNA polymerase Rpb2, domain 3 522 589 3.7E-30 T 18-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF04563 RNA polymerase beta subunit 26 508 1.2E-40 T 18-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF10385 RNA polymerase beta subunit external 1 domain 600 665 2.0E-22 T 18-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 358 463 1.2E-14 T 18-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 153 226 1.0E-6 T 18-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1358 0.0 T 18-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:3.90.1100.10 18 159 2.3E-52 T 18-10-2018 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:3.90.1100.10 451 631 8.0E-69 T 18-10-2018 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:2.40.50.150 842 961 6.7E-44 T 18-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:3.90.1110.10 160 272 7.8E-29 T 18-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:2.40.50.100 723 797 8.0E-32 T 18-10-2018 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:2.40.270.10 799 841 4.9E-6 T 18-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:2.40.270.10 1034 1261 5.2E-87 T 18-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Gene3D G3DSA:3.90.1800.10 1271 1324 7.8E-11 T 18-10-2018 RU84_16960 1551e40cd15c62fe43865d9e8f819ebc 1362 Pfam PF04560 RNA polymerase Rpb2, domain 7 1285 1359 4.8E-26 T 18-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 6 605 4.6E-298 T 18-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 157 167 - T 18-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 508 519 - T 18-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 4 606 58.144 T 18-10-2018 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 Pfam PF00920 Dehydratase family 69 602 2.9E-163 T 18-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 SUPERFAMILY SSF52016 422 605 4.0E-53 T 18-10-2018 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 Gene3D G3DSA:3.50.30.80 422 572 2.7E-48 T 18-10-2018 RU84_15935 29b1289cb304d8ea9d40a3ed7cf80339 617 SUPERFAMILY SSF143975 5 421 9.42E-148 T 18-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 SUPERFAMILY SSF81301 481 772 3.24E-78 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Gene3D G3DSA:3.30.460.100 13 254 2.1E-59 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Gene3D G3DSA:3.30.460.100 518 769 1.9E-78 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 SUPERFAMILY SSF81593 774 905 2.82E-30 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 SUPERFAMILY SSF81301 3 259 2.45E-67 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Gene3D G3DSA:1.20.120.330 770 907 6.6E-43 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 1 907 18.342 T 18-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Gene3D G3DSA:1.20.120.330 258 413 3.9E-50 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 SUPERFAMILY SSF81593 260 409 2.82E-40 T 18-10-2018 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Pfam PF08335 GlnD PII-uridylyltransferase 785 880 9.2E-10 T 18-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Pfam PF08335 GlnD PII-uridylyltransferase 270 409 4.1E-42 T 18-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 4 244 2.8E-61 T 18-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RU84_02925 e175e42ea6cc5cd7a021e2d8e2f3b82f 916 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 509 762 6.6E-71 T 18-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 RU84_05855 255bc4264622c319232fe12fc8b844f0 337 Gene3D G3DSA:3.40.1030.10 85 334 1.6E-60 T 18-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05855 255bc4264622c319232fe12fc8b844f0 337 Pfam PF00591 Glycosyl transferase family, a/b domain 108 324 9.1E-13 T 18-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05855 255bc4264622c319232fe12fc8b844f0 337 SUPERFAMILY SSF47648 22 81 7.72E-16 T 18-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05855 255bc4264622c319232fe12fc8b844f0 337 SUPERFAMILY SSF52418 86 331 6.54E-62 T 18-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05855 255bc4264622c319232fe12fc8b844f0 337 Gene3D G3DSA:1.20.970.10 14 82 4.1E-25 T 18-10-2018 RU84_05855 255bc4264622c319232fe12fc8b844f0 337 Pfam PF02885 Glycosyl transferase family, helical bundle domain 24 77 1.9E-15 T 18-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05025 0aa6301bf145effad994a6f1db683dc0 203 Gene3D G3DSA:3.20.20.70 2 202 6.7E-50 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_05025 0aa6301bf145effad994a6f1db683dc0 203 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 4 187 2.9E-48 T 18-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_05025 0aa6301bf145effad994a6f1db683dc0 203 Pfam PF02581 Thiamine monophosphate synthase 4 183 2.1E-52 T 18-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_05025 0aa6301bf145effad994a6f1db683dc0 203 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 2 203 22.014 T 18-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_05025 0aa6301bf145effad994a6f1db683dc0 203 SUPERFAMILY SSF51391 3 187 3.01E-50 T 18-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_16475 92834f81da93d563ca32d17bb8477e9e 136 SUPERFAMILY SSF51316 4 136 2.2E-44 T 18-10-2018 IPR011057 Mss4-like superfamily RU84_16475 92834f81da93d563ca32d17bb8477e9e 136 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 117 5.4E-23 T 18-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RU84_16475 92834f81da93d563ca32d17bb8477e9e 136 Gene3D G3DSA:2.170.150.70 8 121 1.6E-17 T 18-10-2018 RU84_03585 0993f5a277872ee1bf5c1d78852b3d6a 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 420 2.9E-154 T 18-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RU84_03585 0993f5a277872ee1bf5c1d78852b3d6a 484 Pfam PF10150 Ribonuclease E/G family 115 387 8.1E-103 T 18-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RU84_03585 0993f5a277872ee1bf5c1d78852b3d6a 484 Pfam PF00575 S1 RNA binding domain 38 111 4.5E-5 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_03585 0993f5a277872ee1bf5c1d78852b3d6a 484 SMART SM00316 37 113 7.2E-13 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_03585 0993f5a277872ee1bf5c1d78852b3d6a 484 Gene3D G3DSA:2.40.50.140 31 118 2.6E-25 T 18-10-2018 RU84_03585 0993f5a277872ee1bf5c1d78852b3d6a 484 SUPERFAMILY SSF50249 39 118 8.49E-19 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_08380 869c9284defb875a00a06e5bf809fddd 525 SUPERFAMILY SSF103473 11 506 4.71E-30 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_08380 869c9284defb875a00a06e5bf809fddd 525 Pfam PF07690 Major Facilitator Superfamily 13 408 1.9E-19 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_08755 5397a82b16911db56c17f62f97658316 551 Pfam PF04273 Putative phosphatase (DUF442) 3 109 2.9E-32 T 18-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 RU84_08755 5397a82b16911db56c17f62f97658316 551 SUPERFAMILY SSF52799 5 98 6.92E-7 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_08755 5397a82b16911db56c17f62f97658316 551 SUPERFAMILY SSF51905 148 471 4.1E-29 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08755 5397a82b16911db56c17f62f97658316 551 Gene3D G3DSA:3.50.50.60 262 402 1.5E-94 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08755 5397a82b16911db56c17f62f97658316 551 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 3 134 5.0E-39 T 18-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 RU84_08755 5397a82b16911db56c17f62f97658316 551 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 148 270 4.0E-9 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_08755 5397a82b16911db56c17f62f97658316 551 Gene3D G3DSA:3.50.50.60 150 467 1.5E-94 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08755 5397a82b16911db56c17f62f97658316 551 Gene3D G3DSA:3.90.190.10 1 138 2.7E-40 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 Pfam PF14698 Argininosuccinate lyase C-terminal 379 448 1.2E-25 T 18-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 ProSitePatterns PS00163 Fumarate lyases signature. 291 300 - T 18-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.6E-31 T 18-10-2018 IPR000362 Fumarate lyase family RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00149 Fumarate lyase superfamily signature 291 307 2.6E-31 T 18-10-2018 IPR000362 Fumarate lyase family RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00149 Fumarate lyase superfamily signature 118 136 2.6E-31 T 18-10-2018 IPR000362 Fumarate lyase family RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00149 Fumarate lyase superfamily signature 247 274 2.6E-31 T 18-10-2018 IPR000362 Fumarate lyase family RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00145 Argininosuccinate lyase family signature 209 225 2.4E-68 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00145 Argininosuccinate lyase family signature 158 178 2.4E-68 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00145 Argininosuccinate lyase family signature 291 307 2.4E-68 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00145 Argininosuccinate lyase family signature 117 139 2.4E-68 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00145 Argininosuccinate lyase family signature 326 345 2.4E-68 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 PRINTS PR00145 Argininosuccinate lyase family signature 247 271 2.4E-68 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 Pfam PF00206 Lyase 22 316 3.0E-79 T 18-10-2018 IPR022761 Fumarate lyase, N-terminal RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 Gene3D G3DSA:1.20.200.10 135 465 4.1E-193 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 Hamap MF_00006 Argininosuccinate lyase [argH]. 18 470 44.289 T 18-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 Gene3D G3DSA:1.10.40.30 376 449 4.1E-193 T 18-10-2018 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 SUPERFAMILY SSF48557 19 472 3.93E-156 T 18-10-2018 IPR008948 L-Aspartase-like GO:0003824 RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 Gene3D G3DSA:1.10.275.10 41 245 4.1E-193 T 18-10-2018 IPR024083 Fumarase/histidase, N-terminal RU84_17095 e424b676edd6c1ece2ffe5b2adb6a73c 477 TIGRFAM TIGR00838 argH: argininosuccinate lyase 19 472 1.8E-194 T 18-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_14525 2cf3143f9b183e5e1f8b9d548c030352 415 Pfam PF07690 Major Facilitator Superfamily 42 248 2.8E-11 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_14525 2cf3143f9b183e5e1f8b9d548c030352 415 SUPERFAMILY SSF103473 40 411 3.92E-39 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_14525 2cf3143f9b183e5e1f8b9d548c030352 415 Gene3D G3DSA:1.20.1250.20 38 218 1.1E-17 T 18-10-2018 RU84_14525 2cf3143f9b183e5e1f8b9d548c030352 415 Gene3D G3DSA:1.20.1250.20 230 411 2.3E-20 T 18-10-2018 RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 PIRSF PIRSF000103 2 288 9.3E-58 T 18-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 Gene3D G3DSA:1.10.1040.10 165 288 1.2E-30 T 18-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 SUPERFAMILY SSF51735 8 163 4.08E-39 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 162 2.6E-40 T 18-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 Gene3D G3DSA:3.40.50.720 2 164 8.0E-41 T 18-10-2018 RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 2.4E-22 T 18-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RU84_15425 5cda8a51a4129540f3a4cf1572235cac 288 SUPERFAMILY SSF48179 163 287 1.11E-27 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_04160 18526e787d4d1173e90b065732d33f81 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 543 41.133 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 2.1E-254 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 Gene3D G3DSA:3.50.7.10 173 379 4.4E-240 T 18-10-2018 IPR027409 GroEL-like apical domain superfamily RU84_04160 18526e787d4d1173e90b065732d33f81 544 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 SUPERFAMILY SSF54849 138 204 1.65E-21 T 18-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RU84_04160 18526e787d4d1173e90b065732d33f81 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 1.6E-95 T 18-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RU84_04160 18526e787d4d1173e90b065732d33f81 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 18-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_04160 18526e787d4d1173e90b065732d33f81 544 SUPERFAMILY SSF52029 184 376 3.89E-84 T 18-10-2018 IPR027409 GroEL-like apical domain superfamily RU84_04160 18526e787d4d1173e90b065732d33f81 544 Gene3D G3DSA:3.30.260.10 138 410 4.4E-240 T 18-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RU84_04160 18526e787d4d1173e90b065732d33f81 544 Gene3D G3DSA:1.10.560.10 8 521 4.4E-240 T 18-10-2018 IPR027413 GroEL-like equatorial domain superfamily RU84_04160 18526e787d4d1173e90b065732d33f81 544 SUPERFAMILY SSF48592 7 521 9.92E-79 T 18-10-2018 IPR027413 GroEL-like equatorial domain superfamily RU84_08760 e976d113eb83c0d012911844ff32cee3 231 SMART SM00849 12 171 1.2E-25 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_08760 e976d113eb83c0d012911844ff32cee3 231 Pfam PF00753 Metallo-beta-lactamase superfamily 18 171 1.9E-13 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_08760 e976d113eb83c0d012911844ff32cee3 231 Gene3D G3DSA:3.60.15.10 1 231 2.5E-78 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_08760 e976d113eb83c0d012911844ff32cee3 231 SUPERFAMILY SSF56281 3 226 5.6E-51 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 Gene3D G3DSA:2.40.110.10 119 231 1.9E-41 T 18-10-2018 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 PIRSF PIRSF016578 234 371 2.5E-13 T 18-10-2018 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 PIRSF PIRSF016578 1 217 2.0E-12 T 18-10-2018 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 SUPERFAMILY SSF47203 225 375 2.74E-59 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 1.1E-51 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 Gene3D G3DSA:1.20.140.10 232 375 8.9E-58 T 18-10-2018 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 SUPERFAMILY SSF56645 2 240 1.57E-83 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 4.4E-25 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 116 2.0E-36 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_17785 1fe4f144cf3a4ac97f1e81fbdbd714d2 375 Gene3D G3DSA:1.10.540.10 1 118 3.2E-44 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 182 321 1.4E-26 T 18-10-2018 IPR001453 MoaB/Mog domain RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Gene3D G3DSA:3.40.980.10 180 336 3.3E-101 T 18-10-2018 IPR036425 MoaB/Mog-like domain superfamily RU84_07340 b37d6641fa01852e07e311843e362ec2 411 SUPERFAMILY SSF63867 337 406 4.84E-11 T 18-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 SUPERFAMILY SSF63882 9 181 6.54E-39 T 18-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Gene3D G3DSA:2.40.340.10 337 401 3.3E-101 T 18-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Gene3D G3DSA:2.170.190.11 53 146 3.3E-101 T 18-10-2018 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Pfam PF03453 MoeA N-terminal region (domain I and II) 13 172 1.4E-27 T 18-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Pfam PF03454 MoeA C-terminal region (domain IV) 341 404 1.3E-10 T 18-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07340 b37d6641fa01852e07e311843e362ec2 411 SUPERFAMILY SSF53218 182 332 2.22E-33 T 18-10-2018 IPR036425 MoaB/Mog-like domain superfamily RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Pfam PF00994 Probable molybdopterin binding domain 185 323 4.1E-26 T 18-10-2018 IPR001453 MoaB/Mog domain RU84_07340 b37d6641fa01852e07e311843e362ec2 411 SMART SM00852 185 328 3.3E-28 T 18-10-2018 IPR001453 MoaB/Mog domain RU84_07340 b37d6641fa01852e07e311843e362ec2 411 Gene3D G3DSA:3.90.105.10 34 179 3.3E-101 T 18-10-2018 RU84_19040 1eb6a90f1008d460439071af2469b427 364 SUPERFAMILY SSF56731 136 344 2.22E-20 T 18-10-2018 RU84_19040 1eb6a90f1008d460439071af2469b427 364 Gene3D G3DSA:3.40.1360.10 218 347 4.0E-8 T 18-10-2018 RU84_19040 1eb6a90f1008d460439071af2469b427 364 Gene3D G3DSA:3.90.980.10 128 215 6.2E-7 T 18-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily RU84_19040 1eb6a90f1008d460439071af2469b427 364 Pfam PF08275 DNA primase catalytic core, N-terminal domain 171 209 3.3E-7 T 18-10-2018 IPR013264 DNA primase, catalytic core, N-terminal RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 18-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 SUPERFAMILY SSF54368 2 99 2.35E-35 T 18-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 94 2.2E-31 T 18-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 Pfam PF00120 Glutamine synthetase, catalytic domain 101 466 1.6E-131 T 18-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 18-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 2.0E-195 T 18-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 SUPERFAMILY SSF55931 101 468 2.35E-129 T 18-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 18-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 SMART SM01230 101 379 1.1E-131 T 18-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 Gene3D G3DSA:3.10.20.70 1 103 4.5E-38 T 18-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_05490 1ca6ed7cd5c47ed2c2cb42d6a322d75b 469 Gene3D G3DSA:3.30.590.10 104 457 1.7E-137 T 18-10-2018 RU84_03675 0bb02a0698b9d04beefde15f47a82e66 122 Pfam PF04237 YjbR 17 106 6.7E-22 T 18-10-2018 IPR007351 Uncharacterised protein YjbR RU84_03675 0bb02a0698b9d04beefde15f47a82e66 122 SUPERFAMILY SSF142906 10 119 9.16E-36 T 18-10-2018 IPR038056 YjbR-like superfamily RU84_03675 0bb02a0698b9d04beefde15f47a82e66 122 Gene3D G3DSA:3.90.1150.30 2 122 5.5E-38 T 18-10-2018 IPR038056 YjbR-like superfamily RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 Gene3D G3DSA:3.40.50.300 73 380 1.8E-112 T 18-10-2018 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 Pfam PF16658 Class II release factor RF3, C-terminal domain 388 515 1.2E-46 T 18-10-2018 IPR032090 Peptide chain release factor 3, C-terminal RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 5 528 51.355 T 18-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 SUPERFAMILY SSF54980 394 469 1.4E-17 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 SUPERFAMILY SSF50447 263 394 2.36E-28 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 SUPERFAMILY SSF52540 11 278 3.97E-86 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 59 74 - T 18-10-2018 IPR031157 Tr-type G domain, conserved site RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 7 530 6.2E-257 T 18-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 Pfam PF00009 Elongation factor Tu GTP binding domain 14 278 3.7E-49 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 Gene3D G3DSA:3.30.70.3280 391 530 2.3E-52 T 18-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 Gene3D G3DSA:3.40.50.300 111 276 1.8E-112 T 18-10-2018 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 162 4.5E-20 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 PRINTS PR00315 GTP-binding elongation factor signature 138 147 2.0E-12 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 PRINTS PR00315 GTP-binding elongation factor signature 16 29 2.0E-12 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 PRINTS PR00315 GTP-binding elongation factor signature 102 113 2.0E-12 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 PRINTS PR00315 GTP-binding elongation factor signature 66 74 2.0E-12 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_15715 bfc3ba435672afe9273fe4ebd314aa19 530 PRINTS PR00315 GTP-binding elongation factor signature 86 96 2.0E-12 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 Gene3D G3DSA:3.40.50.720 6 256 3.1E-68 T 18-10-2018 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 SUPERFAMILY SSF51735 1 149 4.3E-20 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 Pfam PF01958 Domain of unknown function DUF108 164 251 2.7E-32 T 18-10-2018 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 SUPERFAMILY SSF55347 120 233 1.9E-30 T 18-10-2018 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 263 33.739 T 18-10-2018 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 PIRSF PIRSF005227 1 263 6.4E-70 T 18-10-2018 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 116 1.1E-8 T 18-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RU84_12970 7e4ae503da341d31973c6f04e8bf28f4 263 Gene3D G3DSA:3.30.360.10 120 238 3.1E-68 T 18-10-2018 RU84_08735 78d62991de39d0a116855c44e6e40243 284 SUPERFAMILY SSF46689 185 235 3.05E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08735 78d62991de39d0a116855c44e6e40243 284 Gene3D G3DSA:1.10.10.60 235 284 1.5E-17 T 18-10-2018 RU84_08735 78d62991de39d0a116855c44e6e40243 284 SUPERFAMILY SSF46689 237 284 5.82E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08735 78d62991de39d0a116855c44e6e40243 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 238 280 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_08735 78d62991de39d0a116855c44e6e40243 284 Pfam PF12833 Helix-turn-helix domain 207 284 2.8E-22 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08735 78d62991de39d0a116855c44e6e40243 284 SMART SM00342 201 284 1.2E-33 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08735 78d62991de39d0a116855c44e6e40243 284 Gene3D G3DSA:1.10.10.60 184 234 6.7E-15 T 18-10-2018 RU84_13490 9de1231cfa1937a2f15164a69c937ff8 228 Pfam PF12844 Helix-turn-helix domain 14 75 1.3E-9 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_13490 9de1231cfa1937a2f15164a69c937ff8 228 SUPERFAMILY SSF47413 11 80 5.04E-9 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_13490 9de1231cfa1937a2f15164a69c937ff8 228 Gene3D G3DSA:1.10.260.40 12 76 1.1E-8 T 18-10-2018 RU84_13490 9de1231cfa1937a2f15164a69c937ff8 228 SMART SM00530 16 73 8.6E-5 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_01140 2054fa1dc7a91db1582d3c0a6116fe4f 359 Pfam PF01223 DNA/RNA non-specific endonuclease 72 263 4.1E-44 T 18-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RU84_01140 2054fa1dc7a91db1582d3c0a6116fe4f 359 Gene3D G3DSA:3.40.570.10 63 282 1.2E-56 T 18-10-2018 RU84_01140 2054fa1dc7a91db1582d3c0a6116fe4f 359 SMART SM00892 79 268 1.6E-44 T 18-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 RU84_01140 2054fa1dc7a91db1582d3c0a6116fe4f 359 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 139 147 - T 18-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 RU84_01140 2054fa1dc7a91db1582d3c0a6116fe4f 359 SUPERFAMILY SSF54060 54 275 3.24E-64 T 18-10-2018 RU84_01140 2054fa1dc7a91db1582d3c0a6116fe4f 359 SMART SM00477 80 268 1.6E-40 T 18-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 RU84_17235 e732e7b5ca83404ac5ac20423919d43f 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 347 2.0E-94 T 18-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 RU84_17235 e732e7b5ca83404ac5ac20423919d43f 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 348 1.2E-76 T 18-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 491 2.9E-190 T 18-10-2018 IPR004482 Mg chelatase-related protein RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 3.7E-45 T 18-10-2018 RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 Gene3D G3DSA:3.40.50.300 186 493 3.5E-54 T 18-10-2018 RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 SMART SM00382 210 389 1.5E-4 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 Gene3D G3DSA:3.30.230.10 13 169 1.1E-13 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 SUPERFAMILY SSF54211 11 169 9.86E-37 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 491 8.4E-28 T 18-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 SUPERFAMILY SSF52540 188 491 3.97E-46 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17295 23854d80faa64e1b4f888ee2701b269f 495 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 392 3.0E-95 T 18-10-2018 IPR000523 Magnesium chelatase ChlI domain RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 SMART SM00895 95 223 2.5E-21 T 18-10-2018 IPR011711 GntR, C-terminal RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 SUPERFAMILY SSF48008 94 230 3.66E-28 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.1E-18 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 Pfam PF07729 FCD domain 96 222 1.5E-23 T 18-10-2018 IPR011711 GntR, C-terminal RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 Gene3D G3DSA:1.20.120.530 94 229 3.5E-30 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 SUPERFAMILY SSF46785 2 70 1.07E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 Gene3D G3DSA:1.10.10.10 1 74 3.4E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 SMART SM00345 7 66 9.2E-18 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 3.9E-10 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17940 6fcdc089e736e0106868362fc5c1f519 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 3.9E-10 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_05135 1e2094507139a1cabf367a248b994445 320 SUPERFAMILY SSF52096 55 256 6.63E-25 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_05135 1e2094507139a1cabf367a248b994445 320 Gene3D G3DSA:3.90.226.10 61 258 6.8E-41 T 18-10-2018 RU84_05135 1e2094507139a1cabf367a248b994445 320 Gene3D G3DSA:3.40.1750.20 159 223 6.8E-41 T 18-10-2018 RU84_05135 1e2094507139a1cabf367a248b994445 320 Pfam PF08496 Peptidase family S49 N-terminal 10 115 3.7E-32 T 18-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 RU84_05135 1e2094507139a1cabf367a248b994445 320 Pfam PF01343 Peptidase family S49 119 259 6.6E-42 T 18-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RU84_02825 09c10609c14b5ec3ef1736fc10af904f 391 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 109 275 5.7E-27 T 18-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain RU84_02825 09c10609c14b5ec3ef1736fc10af904f 391 Pfam PF17482 Phage tail sheath C-terminal domain 276 378 7.8E-13 T 18-10-2018 IPR020287 Tail sheath protein, C-terminal domain RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 SUPERFAMILY SSF51735 12 244 1.19E-57 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 Pfam PF00106 short chain dehydrogenase 17 212 1.4E-44 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 4.5E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 4.5E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 4.5E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 4.5E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 4.5E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 4.5E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 Gene3D G3DSA:3.40.50.720 3 248 3.8E-66 T 18-10-2018 RU84_18130 6c15f3ba3f8c3955b9a4302fcc7e2fd3 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 155 183 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 Gene3D G3DSA:3.40.1110.10 317 441 1.9E-42 T 18-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 305 311 - T 18-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 Pfam PF00122 E1-E2 ATPase 104 282 4.5E-31 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 SUPERFAMILY SSF56784 291 554 1.91E-41 T 18-10-2018 IPR036412 HAD-like superfamily RU84_06700 ef6afa1128981a818edb88ab239169e8 677 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 73 339 3.8E-31 T 18-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 352 598 4.5E-46 T 18-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 546 6.2E-23 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 303 317 6.2E-23 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 152 166 6.2E-23 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 458 468 6.2E-23 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 530 6.2E-23 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 SUPERFAMILY SSF81665 33 661 4.71E-9 T 18-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 SUPERFAMILY SSF81653 110 205 5.1E-20 T 18-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 12 675 38.478 T 18-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 21 671 8.7E-290 T 18-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 Pfam PF00702 haloacid dehalogenase-like hydrolase 299 525 8.3E-37 T 18-10-2018 RU84_06700 ef6afa1128981a818edb88ab239169e8 677 Gene3D G3DSA:2.70.150.20 102 209 6.1E-25 T 18-10-2018 RU84_17590 17f3bb565fc691236fd7604e18e1beac 165 Pfam PF01475 Ferric uptake regulator family 36 152 4.7E-10 T 18-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RU84_17590 17f3bb565fc691236fd7604e18e1beac 165 SUPERFAMILY SSF46785 27 159 9.28E-27 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17590 17f3bb565fc691236fd7604e18e1beac 165 Gene3D G3DSA:3.30.1490.190 106 164 4.2E-13 T 18-10-2018 RU84_17590 17f3bb565fc691236fd7604e18e1beac 165 Gene3D G3DSA:1.10.10.10 16 105 5.9E-32 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 Gene3D G3DSA:3.30.470.20 85 220 5.9E-95 T 18-10-2018 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 18-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 31.567 T 18-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 SUPERFAMILY SSF56104 2 232 4.9E-82 T 18-10-2018 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 234 9.5E-79 T 18-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 18-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 Pfam PF01259 SAICAR synthetase 7 231 5.3E-66 T 18-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_00295 5a2e02811ffe603e24497a5cc4a83971 239 Gene3D G3DSA:3.30.200.20 7 231 5.9E-95 T 18-10-2018 RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 26 92 1.9E-17 T 18-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 RU84_07490 e37da80935800c2d598e5a5705952eb9 356 SUPERFAMILY SSF51161 34 320 1.11E-71 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_07490 e37da80935800c2d598e5a5705952eb9 356 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 10 328 2.7E-104 T 18-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Gene3D G3DSA:2.160.10.10 103 312 1.3E-70 T 18-10-2018 RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 262 288 0.11 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 144 1.8E-7 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 260 2.4E-6 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 148 183 9.1E-5 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Gene3D G3DSA:3.40.1390.10 1 102 6.7E-39 T 18-10-2018 RU84_07490 e37da80935800c2d598e5a5705952eb9 356 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 7 329 33.203 T 18-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 Pfam PF01634 ATP phosphoribosyltransferase 70 221 6.8E-50 T 18-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 160 181 - T 18-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 21 201 1.3E-57 T 18-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 20 225 54.449 T 18-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 Gene3D G3DSA:3.40.190.10 22 211 2.4E-70 T 18-10-2018 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 SUPERFAMILY SSF53850 19 224 1.93E-64 T 18-10-2018 RU84_15125 c8ce78a6c9c087848def0e099b14ab56 227 Gene3D G3DSA:3.40.190.10 112 193 2.4E-70 T 18-10-2018 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 199 382 7.7E-72 T 18-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 Gene3D G3DSA:3.40.50.1950 4 194 3.7E-60 T 18-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 SUPERFAMILY SSF102645 198 415 1.7E-73 T 18-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 Gene3D G3DSA:3.40.50.10300 197 417 8.6E-78 T 18-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 Pfam PF02441 Flavoprotein 11 182 1.1E-48 T 18-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 SUPERFAMILY SSF52507 7 185 2.35E-63 T 18-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 RU84_02660 64f9814553ab7046f11b6efca6f95735 417 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 10 410 1.0E-145 T 18-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 Gene3D G3DSA:3.40.50.1440 11 225 1.5E-77 T 18-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 SMART SM00864 19 210 6.9E-110 T 18-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 SMART SM00865 212 331 3.6E-46 T 18-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 PRINTS PR00423 Cell division protein FtsZ signature 132 153 5.7E-44 T 18-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 PRINTS PR00423 Cell division protein FtsZ signature 104 124 5.7E-44 T 18-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 PRINTS PR00423 Cell division protein FtsZ signature 217 238 5.7E-44 T 18-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 PRINTS PR00423 Cell division protein FtsZ signature 194 216 5.7E-44 T 18-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 Gene3D G3DSA:3.30.1330.20 226 340 4.5E-33 T 18-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 ProSitePatterns PS01135 FtsZ protein signature 2. 103 124 - T 18-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 345 8.8E-125 T 18-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 ProSitePatterns PS01134 FtsZ protein signature 1. 50 84 - T 18-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 15 352 35.882 T 18-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 21 179 7.3E-43 T 18-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 SUPERFAMILY SSF52490 18 213 1.96E-67 T 18-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 SUPERFAMILY SSF55307 210 325 3.66E-37 T 18-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 RU84_00750 bdbe5e7435418828c31bc0b14fadaac4 391 Pfam PF12327 FtsZ family, C-terminal domain 227 322 4.6E-31 T 18-10-2018 IPR024757 Cell division protein FtsZ, C-terminal RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 49 529 39.466 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 Gene3D G3DSA:1.10.1390.10 512 553 1.8E-15 T 18-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 PRINTS PR00662 Glucose-6-phosphate isomerase signature 488 502 7.0E-51 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 PRINTS PR00662 Glucose-6-phosphate isomerase signature 470 488 7.0E-51 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 PRINTS PR00662 Glucose-6-phosphate isomerase signature 502 515 7.0E-51 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 PRINTS PR00662 Glucose-6-phosphate isomerase signature 266 284 7.0E-51 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 7.0E-51 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 PRINTS PR00662 Glucose-6-phosphate isomerase signature 343 364 7.0E-51 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 Pfam PF00342 Phosphoglucose isomerase 55 547 1.2E-175 T 18-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 Gene3D G3DSA:3.40.50.10490 101 296 1.8E-206 T 18-10-2018 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 SUPERFAMILY SSF53697 17 552 2.28E-180 T 18-10-2018 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 Gene3D G3DSA:3.40.50.10490 18 511 1.8E-206 T 18-10-2018 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 270 283 - T 18-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_17960 c004a7e186653c13d0d0c12b33a65be9 556 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 502 519 - T 18-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.1E-12 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.1E-12 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.1E-12 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 SUPERFAMILY SSF46785 1 60 2.02E-14 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 1.5E-16 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 Gene3D G3DSA:1.10.10.10 2 51 2.8E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 SUPERFAMILY SSF54909 63 146 8.98E-17 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 SMART SM00344 1 110 1.2E-31 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 Gene3D G3DSA:3.30.70.920 52 148 2.3E-23 T 18-10-2018 RU84_05100 d84c206474fcc34877847b6917f3d6cc 161 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 1.2E-14 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 SUPERFAMILY SSF109604 31 229 5.34E-44 T 18-10-2018 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Pfam PF13291 ACT domain 689 763 2.5E-18 T 18-10-2018 IPR002912 ACT domain RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 78 762 3.6E-170 T 18-10-2018 IPR004811 RelA/SpoT family GO:0015969 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Gene3D G3DSA:3.30.460.10 232 363 5.0E-50 T 18-10-2018 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Gene3D G3DSA:1.10.3210.10 24 230 1.0E-40 T 18-10-2018 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 SMART SM00954 274 383 1.5E-59 T 18-10-2018 IPR007685 RelA/SpoT GO:0015969 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Gene3D G3DSA:3.30.70.260 690 766 2.7E-17 T 18-10-2018 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 SUPERFAMILY SSF81271 433 493 2.18E-18 T 18-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Pfam PF13328 HD domain 68 214 2.5E-37 T 18-10-2018 IPR003607 HD/PDEase domain RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Pfam PF02824 TGS domain 434 493 1.1E-18 T 18-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 SUPERFAMILY SSF55021 689 766 3.71E-13 T 18-10-2018 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Pfam PF04607 Region found in RelA / SpoT proteins 274 383 1.7E-33 T 18-10-2018 IPR007685 RelA/SpoT GO:0015969 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 SUPERFAMILY SSF81301 231 395 1.52E-58 T 18-10-2018 RU84_15395 ed53bf345975d821ddbf9d1b16322aa1 768 Gene3D G3DSA:3.10.20.30 431 502 1.2E-28 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_01925 40d9ded1d1c01a4007a15cf3b837a3f5 193 SUPERFAMILY SSF102405 1 179 5.65E-61 T 18-10-2018 RU84_01925 40d9ded1d1c01a4007a15cf3b837a3f5 193 Gene3D G3DSA:3.40.50.450 1 192 2.4E-74 T 18-10-2018 RU84_01925 40d9ded1d1c01a4007a15cf3b837a3f5 193 Pfam PF03641 Possible lysine decarboxylase 46 175 3.4E-40 T 18-10-2018 IPR031100 LOG family RU84_01925 40d9ded1d1c01a4007a15cf3b837a3f5 193 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 3 179 8.1E-61 T 18-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RU84_14125 8bf688af50e717311b43e4fb5a639d5e 106 Pfam PF01844 HNH endonuclease 52 97 6.9E-11 T 18-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 RU84_14125 8bf688af50e717311b43e4fb5a639d5e 106 SMART SM00507 39 95 3.9E-7 T 18-10-2018 IPR003615 HNH nuclease RU84_14125 8bf688af50e717311b43e4fb5a639d5e 106 Gene3D G3DSA:3.30.40.60 11 106 6.6E-6 T 18-10-2018 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 6 110 31.901 T 18-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 244 33.885 T 18-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 SUPERFAMILY SSF101386 147 243 2.83E-20 T 18-10-2018 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 146 239 18.775 T 18-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Gene3D G3DSA:1.10.287.1080 145 245 2.1E-25 T 18-10-2018 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Gene3D G3DSA:3.10.20.400 2 97 2.5E-38 T 18-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 32 106 6.0E-34 T 18-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 149 239 2.4E-24 T 18-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 152 242 1.4E-11 T 18-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 55 109 4.0E-27 T 18-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 RU84_16670 5dd949dbd27de2b7c9bb098372727039 257 SUPERFAMILY SSF141734 4 120 1.19E-48 T 18-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 RU84_11680 eecf0b4a553c2599d90d8ae46511f08b 483 Gene3D G3DSA:3.40.605.10 8 469 3.8E-151 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_11680 eecf0b4a553c2599d90d8ae46511f08b 483 Pfam PF00171 Aldehyde dehydrogenase family 16 472 7.4E-146 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_11680 eecf0b4a553c2599d90d8ae46511f08b 483 Gene3D G3DSA:3.40.309.10 255 442 3.8E-151 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_11680 eecf0b4a553c2599d90d8ae46511f08b 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 250 257 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_11680 eecf0b4a553c2599d90d8ae46511f08b 483 SUPERFAMILY SSF53720 2 477 2.62E-147 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 SUPERFAMILY SSF53738 159 259 7.06E-26 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 208 221 3.8E-21 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 237 252 3.8E-21 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 3.8E-21 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 97 111 3.8E-21 T 18-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Gene3D G3DSA:3.40.120.10 256 376 1.1E-29 T 18-10-2018 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Gene3D G3DSA:3.40.120.10 176 253 4.7E-24 T 18-10-2018 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 10 135 9.2E-30 T 18-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Gene3D G3DSA:3.30.310.50 378 468 3.1E-16 T 18-10-2018 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 98 107 - T 18-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 256 1.0E-24 T 18-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 374 1.6E-17 T 18-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 SUPERFAMILY SSF55957 397 464 1.74E-13 T 18-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 Gene3D G3DSA:3.40.120.10 2 142 1.1E-37 T 18-10-2018 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 SUPERFAMILY SSF53738 7 180 1.71E-31 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_13775 4256ddd8a052684a20cfb88c1300fcdb 472 SUPERFAMILY SSF53738 263 371 5.49E-22 T 18-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 RU84_06690 341ce9e096cdd15d4c12e5ffb6aa6453 145 Gene3D G3DSA:3.30.70.560 6 127 2.3E-11 T 18-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_06690 341ce9e096cdd15d4c12e5ffb6aa6453 145 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 10 111 6.4E-12 T 18-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_06690 341ce9e096cdd15d4c12e5ffb6aa6453 145 SUPERFAMILY SSF55083 8 128 1.31E-14 T 18-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_05295 c9efb64001910bf3b8b644c02ea14b9c 322 Gene3D G3DSA:3.40.50.1100 17 312 1.5E-120 T 18-10-2018 RU84_05295 c9efb64001910bf3b8b644c02ea14b9c 322 Gene3D G3DSA:3.40.50.1100 55 151 1.5E-120 T 18-10-2018 RU84_05295 c9efb64001910bf3b8b644c02ea14b9c 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 21 308 5.8E-79 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_05295 c9efb64001910bf3b8b644c02ea14b9c 322 SUPERFAMILY SSF53686 8 316 3.27E-97 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_05295 c9efb64001910bf3b8b644c02ea14b9c 322 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 47 60 - T 18-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Pfam PF00141 Peroxidase 395 691 1.8E-32 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Pfam PF00141 Peroxidase 80 389 3.0E-48 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 52 65 2.6E-49 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 67 92 2.6E-49 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 26 48 2.6E-49 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 260 283 2.6E-49 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 472 498 2.6E-49 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Hamap MF_01961 Catalase-peroxidase [katG]. 2 718 38.389 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 SUPERFAMILY SSF48113 428 717 2.8E-98 T 18-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00458 Haem peroxidase superfamily signature 90 104 5.8E-18 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00458 Haem peroxidase superfamily signature 168 180 5.8E-18 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00458 Haem peroxidase superfamily signature 252 267 5.8E-18 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00458 Haem peroxidase superfamily signature 150 167 5.8E-18 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 PRINTS PR00458 Haem peroxidase superfamily signature 311 326 5.8E-18 T 18-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Gene3D G3DSA:1.10.520.10 21 423 1.6E-206 T 18-10-2018 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Gene3D G3DSA:1.10.520.10 424 717 4.8E-131 T 18-10-2018 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Gene3D G3DSA:1.10.420.20 191 390 1.6E-206 T 18-10-2018 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 21 717 0.0 T 18-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 ProSitePatterns PS00436 Peroxidases active site signature. 90 101 - T 18-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 SUPERFAMILY SSF48113 23 422 7.37E-137 T 18-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 RU84_16310 5c6f11ce830aa2dd9f0219412aa80367 718 Gene3D G3DSA:1.10.420.10 570 693 4.8E-131 T 18-10-2018 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 Gene3D G3DSA:3.40.1190.10 100 337 1.1E-73 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 416 1.3E-18 T 18-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 SUPERFAMILY SSF53623 101 330 6.54E-71 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 485 3.4E-143 T 18-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 Gene3D G3DSA:3.40.1390.10 1 77 3.6E-9 T 18-10-2018 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 485 30.929 T 18-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 SUPERFAMILY SSF53244 334 485 1.02E-47 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 SUPERFAMILY SSF63418 15 94 7.19E-10 T 18-10-2018 IPR035911 MurE/MurF, N-terminal RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 Pfam PF08245 Mur ligase middle domain 108 313 4.3E-52 T 18-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RU84_01405 177d6474b0cc74fe4f86526cb52e469c 499 Gene3D G3DSA:3.90.190.20 340 496 1.1E-55 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 Gene3D G3DSA:3.30.870.10 79 277 4.9E-37 T 18-10-2018 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 SUPERFAMILY SSF56024 329 505 6.87E-29 T 18-10-2018 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 SMART SM00155 183 210 0.0011 T 18-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 SMART SM00155 433 459 2.6E-4 T 18-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 Pfam PF13091 PLD-like domain 94 242 1.5E-16 T 18-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 Pfam PF13091 PLD-like domain 331 485 1.7E-20 T 18-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 Gene3D G3DSA:3.30.870.10 308 508 1.3E-36 T 18-10-2018 RU84_02530 772101b946bf0e14a293667e2a4cfb9a 541 SUPERFAMILY SSF56024 33 258 1.2E-43 T 18-10-2018 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.255 T 18-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-16 T 18-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-16 T 18-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-16 T 18-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 6.9E-36 T 18-10-2018 IPR027486 Ribosomal protein S10 domain RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 SMART SM01403 7 101 4.5E-55 T 18-10-2018 IPR027486 Ribosomal protein S10 domain RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 7.9E-45 T 18-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 18-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 SUPERFAMILY SSF54999 5 101 1.31E-36 T 18-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RU84_02005 30754b50b4a1c114facd78fddb6cd26e 103 Gene3D G3DSA:3.30.70.600 1 103 7.2E-37 T 18-10-2018 IPR036838 Ribosomal protein S10 domain superfamily RU84_04375 7b485d1a35773eff06e928b820c2e656 548 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 62 221 2.1E-22 T 18-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like RU84_15035 26d52cb351d9947a312f7e1b780c4b3c 90 Gene3D G3DSA:3.30.310.50 1 90 3.1E-22 T 18-10-2018 RU84_15035 26d52cb351d9947a312f7e1b780c4b3c 90 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 6 89 1.5E-17 T 18-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 4 237 6.0E-59 T 18-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 SUPERFAMILY SSF75217 72 236 4.01E-47 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 PIRSF PIRSF015601 1 240 4.3E-60 T 18-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 Gene3D G3DSA:3.40.1280.10 72 240 3.6E-51 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 Gene3D G3DSA:2.40.240.20 1 66 4.3E-20 T 18-10-2018 RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 Pfam PF04452 RNA methyltransferase 17 235 2.7E-69 T 18-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RU84_05565 9c1c926c5bcb014104a0493dc5b3680d 240 SUPERFAMILY SSF88697 1 69 4.72E-18 T 18-10-2018 IPR015947 PUA-like superfamily RU84_04385 9a34df318ac73a66ce2b00a4d72a759b 326 Gene3D G3DSA:3.90.550.10 2 225 1.7E-38 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_04385 9a34df318ac73a66ce2b00a4d72a759b 326 SUPERFAMILY SSF53448 3 213 2.42E-40 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_04385 9a34df318ac73a66ce2b00a4d72a759b 326 Pfam PF00535 Glycosyl transferase family 2 8 167 1.4E-29 T 18-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RU84_09205 5a26290b7a72a905c5ef760ce9534cef 168 Gene3D G3DSA:3.50.30.40 4 168 7.0E-63 T 18-10-2018 RU84_09205 5a26290b7a72a905c5ef760ce9534cef 168 SUPERFAMILY SSF89562 26 167 7.33E-46 T 18-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily RU84_09205 5a26290b7a72a905c5ef760ce9534cef 168 Pfam PF03737 Aldolase/RraA 8 162 2.9E-46 T 18-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RU84_09205 5a26290b7a72a905c5ef760ce9534cef 168 TIGRFAM TIGR01935 NOT-MenG: RraA family 9 162 1.3E-61 T 18-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 261 381 3.5E-35 T 18-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 Pfam PF02767 DNA polymerase III beta subunit, central domain 133 259 3.4E-29 T 18-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 SUPERFAMILY SSF55979 261 382 4.49E-35 T 18-10-2018 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 Gene3D G3DSA:3.10.150.10 129 263 1.5E-31 T 18-10-2018 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 SMART SM00480 17 378 4.7E-122 T 18-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 SUPERFAMILY SSF55979 131 260 5.65E-21 T 18-10-2018 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 Gene3D G3DSA:3.10.150.10 264 382 6.7E-36 T 18-10-2018 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 381 8.3E-94 T 18-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 SUPERFAMILY SSF55979 3 120 9.87E-24 T 18-10-2018 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 Gene3D G3DSA:3.10.150.10 1 126 1.9E-35 T 18-10-2018 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 3 122 2.2E-31 T 18-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 RU84_00010 901c56e80041e0e9c744561d6df10f5f 382 PIRSF PIRSF000804 1 382 1.1E-106 T 18-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 RU84_04105 92067ee79d820501a185d9e17544724a 282 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 2.2E-38 T 18-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 258 266 - T 18-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 SUPERFAMILY SSF51735 127 278 1.71E-45 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_04105 92067ee79d820501a185d9e17544724a 282 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 127 280 2.5E-61 T 18-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 281 35.153 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 SUPERFAMILY SSF53223 2 121 7.29E-38 T 18-10-2018 RU84_04105 92067ee79d820501a185d9e17544724a 282 Gene3D G3DSA:3.40.50.10860 7 275 4.6E-102 T 18-10-2018 RU84_04105 92067ee79d820501a185d9e17544724a 282 Gene3D G3DSA:3.40.50.720 5 257 4.6E-102 T 18-10-2018 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 272 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 237 253 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_04105 92067ee79d820501a185d9e17544724a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.6E-62 T 18-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 RU84_13045 042a5b9fe013ed2ae19f284a0415bb05 139 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 5 139 1.2E-35 T 18-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 RU84_13045 042a5b9fe013ed2ae19f284a0415bb05 139 Pfam PF13994 PgaD-like protein 6 136 6.6E-27 T 18-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 RU84_01055 60fead071249c07d045c0b60370cd159 306 Gene3D G3DSA:3.40.190.10 91 288 5.0E-52 T 18-10-2018 RU84_01055 60fead071249c07d045c0b60370cd159 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.0E-25 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01055 60fead071249c07d045c0b60370cd159 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01055 60fead071249c07d045c0b60370cd159 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01055 60fead071249c07d045c0b60370cd159 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01055 60fead071249c07d045c0b60370cd159 306 Pfam PF03466 LysR substrate binding domain 87 283 4.8E-34 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_01055 60fead071249c07d045c0b60370cd159 306 SUPERFAMILY SSF46785 1 86 5.69E-25 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_01055 60fead071249c07d045c0b60370cd159 306 Gene3D G3DSA:1.10.10.10 1 90 1.8E-30 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01055 60fead071249c07d045c0b60370cd159 306 SUPERFAMILY SSF53850 88 292 6.27E-30 T 18-10-2018 RU84_01055 60fead071249c07d045c0b60370cd159 306 Gene3D G3DSA:3.40.190.10 164 271 5.0E-52 T 18-10-2018 RU84_10665 a9664e182cc4e4dc7d3985bf95b0c4b7 438 Gene3D G3DSA:1.20.1250.20 9 437 2.2E-82 T 18-10-2018 RU84_10665 a9664e182cc4e4dc7d3985bf95b0c4b7 438 SUPERFAMILY SSF103473 13 434 2.62E-83 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10665 a9664e182cc4e4dc7d3985bf95b0c4b7 438 PIRSF PIRSF002808 3 284 1.1E-25 T 18-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RU84_10665 a9664e182cc4e4dc7d3985bf95b0c4b7 438 PIRSF PIRSF002808 336 437 0.031 T 18-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RU84_10665 a9664e182cc4e4dc7d3985bf95b0c4b7 438 PIRSF PIRSF002808 273 338 6.5E-5 T 18-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RU84_10665 a9664e182cc4e4dc7d3985bf95b0c4b7 438 Pfam PF07690 Major Facilitator Superfamily 31 395 2.2E-49 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_04140 7a253a325f59f36641f6fff041f1fa0d 312 Pfam PF00781 Diacylglycerol kinase catalytic domain 7 134 2.3E-22 T 18-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RU84_04140 7a253a325f59f36641f6fff041f1fa0d 312 Gene3D G3DSA:2.60.200.40 139 296 3.3E-17 T 18-10-2018 RU84_04140 7a253a325f59f36641f6fff041f1fa0d 312 SUPERFAMILY SSF111331 4 307 1.2E-55 T 18-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RU84_04140 7a253a325f59f36641f6fff041f1fa0d 312 SMART SM00046 6 138 3.3E-4 T 18-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 RU84_04140 7a253a325f59f36641f6fff041f1fa0d 312 Gene3D G3DSA:3.40.50.10330 2 138 2.8E-24 T 18-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Gene3D G3DSA:1.10.150.20 243 327 2.4E-37 T 18-10-2018 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Gene3D G3DSA:3.30.1360.10 17 225 2.8E-79 T 18-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 315 34.622 T 18-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 SUPERFAMILY SSF55257 6 231 3.73E-31 T 18-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 225 1.6E-23 T 18-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 154 2.9E-20 T 18-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 SUPERFAMILY SSF47789 249 322 6.54E-26 T 18-10-2018 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Gene3D G3DSA:2.170.120.12 53 175 2.8E-79 T 18-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 306 4.8E-24 T 18-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 SUPERFAMILY SSF56553 53 176 9.68E-36 T 18-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 SMART SM00662 23 232 9.2E-86 T 18-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 314 3.8E-105 T 18-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_02135 e8da0edf6d38d02a2d89de60b2a1667b 335 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 254 324 7.0E-35 T 18-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 Gene3D G3DSA:3.30.499.10 333 472 9.0E-50 T 18-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 1.1E-234 T 18-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 ProSitePatterns PS00450 Aconitase family signature 1. 345 361 - T 18-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 1.4E-161 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 88 101 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 349 360 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 139 154 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 201 214 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 215 228 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 114 122 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 292 306 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 406 419 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 PRINTS PR00415 Aconitase family signature 125 138 2.6E-46 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 SUPERFAMILY SSF53732 2 471 1.26E-166 T 18-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 Gene3D G3DSA:3.30.499.20 5 292 8.7E-97 T 18-10-2018 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 472 59.315 T 18-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 RU84_16280 eed99f79668b94f8be74880a0ea41c7d 472 ProSitePatterns PS01244 Aconitase family signature 2. 406 419 - T 18-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 SUPERFAMILY SSF51395 13 320 9.66E-70 T 18-10-2018 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 PIRSF PIRSF006621 2 332 2.0E-75 T 18-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 9 331 49.04 T 18-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 Gene3D G3DSA:3.20.20.70 10 251 7.1E-72 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 Pfam PF01207 Dihydrouridine synthase (Dus) 17 313 3.1E-87 T 18-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 96 114 - T 18-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 14 320 3.1E-141 T 18-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 RU84_15670 5b50753e24b8e4a1d2b820b315370b41 338 Gene3D G3DSA:1.20.120.1460 254 327 4.8E-18 T 18-10-2018 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 48 56 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Gene3D G3DSA:3.30.465.10 257 369 7.3E-30 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 SUPERFAMILY SSF55447 377 480 1.28E-29 T 18-10-2018 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 SMART SM01092 379 481 6.8E-30 T 18-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Pfam PF01799 [2Fe-2S] binding domain 90 168 1.6E-30 T 18-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 SUPERFAMILY SSF56176 195 369 3.6E-49 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Gene3D G3DSA:3.10.20.30 2 96 1.3E-24 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 PIRSF PIRSF036557 3 492 3.0E-192 T 18-10-2018 IPR012175 Xanthine dehydrogenase, small subunit, bacteria RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 SUPERFAMILY SSF54292 12 95 1.08E-14 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Gene3D G3DSA:1.10.150.120 101 174 8.2E-33 T 18-10-2018 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Gene3D G3DSA:3.30.390.50 379 481 6.0E-26 T 18-10-2018 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 380 479 6.1E-28 T 18-10-2018 IPR005107 CO dehydrogenase flavoprotein, C-terminal RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 SUPERFAMILY SSF47741 106 212 4.71E-33 T 18-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 205 369 1.3E-46 T 18-10-2018 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 Gene3D G3DSA:3.30.43.10 207 256 2.7E-18 T 18-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RU84_05435 c2cc6c77cea091ca38d281d260cc7bc5 499 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 6 480 2.6E-199 T 18-10-2018 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999|Reactome: R-HSA-74259|Reactome: R-HSA-8851680 RU84_09120 da1596b5071356386e6061e69c93bd2c 621 Gene3D G3DSA:1.10.4030.30 37 194 3.7E-12 T 18-10-2018 RU84_09120 da1596b5071356386e6061e69c93bd2c 621 SUPERFAMILY SSF54534 262 358 1.24E-23 T 18-10-2018 RU84_09120 da1596b5071356386e6061e69c93bd2c 621 Pfam PF13624 SurA N-terminal domain 1 158 8.0E-36 T 18-10-2018 RU84_09120 da1596b5071356386e6061e69c93bd2c 621 Pfam PF13616 PPIC-type PPIASE domain 253 362 4.8E-28 T 18-10-2018 RU84_09120 da1596b5071356386e6061e69c93bd2c 621 Gene3D G3DSA:3.10.50.40 265 360 1.4E-25 T 18-10-2018 RU84_09120 da1596b5071356386e6061e69c93bd2c 621 SUPERFAMILY SSF109998 40 290 3.73E-23 T 18-10-2018 IPR027304 Trigger factor/SurA domain superfamily RU84_04305 9ea0a30c9ef97c40f5ec79795b8cb3a0 130 Pfam PF06803 Protein of unknown function (DUF1232) 35 69 6.2E-13 T 18-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 RU84_03580 cbdfac43e2ba8092ff3ba8e7c79e416b 186 Hamap MF_00528 Septum formation protein Maf [maf]. 3 186 29.461 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_03580 cbdfac43e2ba8092ff3ba8e7c79e416b 186 Pfam PF02545 Maf-like protein 3 183 9.7E-57 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_03580 cbdfac43e2ba8092ff3ba8e7c79e416b 186 Gene3D G3DSA:3.90.950.10 1 186 2.3E-67 T 18-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RU84_03580 cbdfac43e2ba8092ff3ba8e7c79e416b 186 PIRSF PIRSF006305 1 186 7.9E-52 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_03580 cbdfac43e2ba8092ff3ba8e7c79e416b 186 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 180 1.5E-51 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_03580 cbdfac43e2ba8092ff3ba8e7c79e416b 186 SUPERFAMILY SSF52972 2 182 9.16E-61 T 18-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RU84_12180 00db2318011ca7347602c8fde13058f0 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 7.5E-16 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12180 00db2318011ca7347602c8fde13058f0 296 SUPERFAMILY SSF53850 101 292 9.23E-17 T 18-10-2018 RU84_12180 00db2318011ca7347602c8fde13058f0 296 Gene3D G3DSA:1.10.10.10 1 82 2.6E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_12180 00db2318011ca7347602c8fde13058f0 296 Pfam PF03466 LysR substrate binding domain 103 291 1.8E-11 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_12180 00db2318011ca7347602c8fde13058f0 296 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 2 294 5.8E-108 T 18-10-2018 IPR017685 HTH-type transcriptional regulator ArgP RU84_12180 00db2318011ca7347602c8fde13058f0 296 Gene3D G3DSA:3.40.190.290 88 296 2.6E-72 T 18-10-2018 RU84_12180 00db2318011ca7347602c8fde13058f0 296 SUPERFAMILY SSF46785 1 108 1.63E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09535 c8979942bf50de1a1536b0affa386126 341 SMART SM00342 254 336 1.2E-26 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09535 c8979942bf50de1a1536b0affa386126 341 Gene3D G3DSA:1.10.10.60 235 339 1.5E-27 T 18-10-2018 RU84_09535 c8979942bf50de1a1536b0affa386126 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 207 3.5E-23 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_09535 c8979942bf50de1a1536b0affa386126 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 2.2E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_09535 c8979942bf50de1a1536b0affa386126 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 2.2E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_09535 c8979942bf50de1a1536b0affa386126 341 Pfam PF12833 Helix-turn-helix domain 261 337 3.4E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09535 c8979942bf50de1a1536b0affa386126 341 SUPERFAMILY SSF46689 289 338 1.79E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_00650 614cda0c44029996ff09cadb1e7d25c9 167 TIGRFAM TIGR03180 UraD_2: OHCU decarboxylase 6 164 3.3E-54 T 18-10-2018 IPR017595 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 2 RU84_00650 614cda0c44029996ff09cadb1e7d25c9 167 Gene3D G3DSA:1.10.3330.10 1 166 5.9E-45 T 18-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RU84_00650 614cda0c44029996ff09cadb1e7d25c9 167 Pfam PF09349 OHCU decarboxylase 7 161 3.2E-33 T 18-10-2018 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RU84_00650 614cda0c44029996ff09cadb1e7d25c9 167 SUPERFAMILY SSF158694 3 163 1.05E-39 T 18-10-2018 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RU84_01995 3a22c5b5418135d6bb1b263869aad4a5 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 394 3.9E-73 T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_01995 3a22c5b5418135d6bb1b263869aad4a5 396 Gene3D G3DSA:3.40.640.10 2 258 3.9E-51 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_01995 3a22c5b5418135d6bb1b263869aad4a5 396 SUPERFAMILY SSF53383 6 394 2.02E-71 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_01995 3a22c5b5418135d6bb1b263869aad4a5 396 PIRSF PIRSF001434 1 396 7.6E-103 T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_01995 3a22c5b5418135d6bb1b263869aad4a5 396 Gene3D G3DSA:3.90.1150.10 261 396 5.5E-31 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_01885 cd9e05a122bad57570c572fe19d39863 615 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 162 170 - T 18-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site RU84_01885 cd9e05a122bad57570c572fe19d39863 615 Pfam PF00271 Helicase conserved C-terminal domain 250 349 2.1E-25 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_01885 cd9e05a122bad57570c572fe19d39863 615 Gene3D G3DSA:3.40.50.300 1 220 5.0E-71 T 18-10-2018 RU84_01885 cd9e05a122bad57570c572fe19d39863 615 SMART SM00490 268 349 3.8E-32 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_01885 cd9e05a122bad57570c572fe19d39863 615 Gene3D G3DSA:3.40.50.300 222 389 1.2E-47 T 18-10-2018 RU84_01885 cd9e05a122bad57570c572fe19d39863 615 SUPERFAMILY SSF52540 84 370 3.36E-68 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01885 cd9e05a122bad57570c572fe19d39863 615 SMART SM00487 22 231 3.9E-54 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_01885 cd9e05a122bad57570c572fe19d39863 615 Pfam PF00270 DEAD/DEAH box helicase 27 201 3.2E-45 T 18-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RU84_07345 c521e5280c918519c7f9a9407e3a8c62 160 SUPERFAMILY SSF46785 6 143 8.92E-42 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07345 c521e5280c918519c7f9a9407e3a8c62 160 Gene3D G3DSA:1.10.10.10 3 160 4.7E-51 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07345 c521e5280c918519c7f9a9407e3a8c62 160 Pfam PF01638 HxlR-like helix-turn-helix 19 106 9.0E-23 T 18-10-2018 IPR002577 Helix-turn-helix, HxlR type RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 19 429 1.6E-179 T 18-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 59 230 1.0E-49 T 18-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 178 193 - T 18-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 SUPERFAMILY SSF142984 254 337 4.84E-21 T 18-10-2018 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 SMART SM00928 342 387 4.6E-21 T 18-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 Pfam PF10531 SLBB domain 259 304 5.1E-7 T 18-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 355 366 - T 18-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 Gene3D G3DSA:3.40.50.11540 64 241 4.2E-78 T 18-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 Gene3D G3DSA:3.10.20.600 245 339 1.6E-28 T 18-10-2018 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 345 427 2.6E-25 T 18-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 Gene3D G3DSA:1.20.1440.230 340 441 4.7E-27 T 18-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 SUPERFAMILY SSF140490 339 432 7.45E-31 T 18-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14765 0a59cd2e280733c54da7c38c3f11a543 443 SUPERFAMILY SSF142019 22 245 7.45E-85 T 18-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_19190 5614025a46564aebfaea912f5c08c4dc 262 Gene3D G3DSA:3.10.450.230 109 235 4.9E-12 T 18-10-2018 RU84_19190 5614025a46564aebfaea912f5c08c4dc 262 SUPERFAMILY SSF54427 114 228 9.2E-14 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_19190 5614025a46564aebfaea912f5c08c4dc 262 Pfam PF04335 VirB8 protein 17 227 3.2E-19 T 18-10-2018 IPR007430 Bacterial virulence protein VirB8 GO:0016020 RU84_11465 db9f36f8879c2b7bce11ffd6933a8bcd 140 Gene3D G3DSA:2.20.25.10 1 32 3.0E-8 T 18-10-2018 RU84_11465 db9f36f8879c2b7bce11ffd6933a8bcd 140 Gene3D G3DSA:3.30.300.20 39 139 5.3E-29 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_11465 db9f36f8879c2b7bce11ffd6933a8bcd 140 SUPERFAMILY SSF82784 1 138 4.32E-40 T 18-10-2018 IPR036102 OsmC/Ohr superfamily RU84_11465 db9f36f8879c2b7bce11ffd6933a8bcd 140 Pfam PF02566 OsmC-like protein 33 132 1.4E-19 T 18-10-2018 IPR003718 OsmC/Ohr family RU84_06470 59462fde8e3411958434beba6460eef8 524 Gene3D G3DSA:3.40.140.20 387 524 7.8E-62 T 18-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_06470 59462fde8e3411958434beba6460eef8 524 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 524 45.747 T 18-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_06470 59462fde8e3411958434beba6460eef8 524 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 524 8.4E-241 T 18-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_06470 59462fde8e3411958434beba6460eef8 524 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 455 7.1E-119 T 18-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_06470 59462fde8e3411958434beba6460eef8 524 SUPERFAMILY SSF52335 3 192 3.79E-72 T 18-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RU84_06470 59462fde8e3411958434beba6460eef8 524 Pfam PF02142 MGS-like domain 15 128 3.1E-30 T 18-10-2018 IPR011607 Methylglyoxal synthase-like domain RU84_06470 59462fde8e3411958434beba6460eef8 524 PIRSF PIRSF000414 1 524 4.0E-223 T 18-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_06470 59462fde8e3411958434beba6460eef8 524 Gene3D G3DSA:3.40.140.20 209 365 3.4E-55 T 18-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_06470 59462fde8e3411958434beba6460eef8 524 SMART SM00851 15 128 6.4E-62 T 18-10-2018 IPR011607 Methylglyoxal synthase-like domain RU84_06470 59462fde8e3411958434beba6460eef8 524 Gene3D G3DSA:3.40.50.1380 1 195 4.2E-86 T 18-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RU84_06470 59462fde8e3411958434beba6460eef8 524 SUPERFAMILY SSF53927 212 524 2.21E-129 T 18-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RU84_06470 59462fde8e3411958434beba6460eef8 524 SMART SM00798 133 456 9.9E-212 T 18-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 RU84_02090 6b4749b553a9c6e7b58a986eb72a906a 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 25.93 T 18-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02090 6b4749b553a9c6e7b58a986eb72a906a 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 3.3E-39 T 18-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02090 6b4749b553a9c6e7b58a986eb72a906a 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 116 8.4E-41 T 18-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02090 6b4749b553a9c6e7b58a986eb72a906a 116 Gene3D G3DSA:3.30.420.100 2 116 1.8E-40 T 18-10-2018 RU84_02090 6b4749b553a9c6e7b58a986eb72a906a 116 SUPERFAMILY SSF53137 4 114 2.4E-50 T 18-10-2018 RU84_02100 68eee1853237098482299234a0f29593 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 8.9E-18 T 18-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain RU84_02100 68eee1853237098482299234a0f29593 58 PIRSF PIRSF002211 1 58 6.7E-25 T 18-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02100 68eee1853237098482299234a0f29593 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.409 T 18-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02100 68eee1853237098482299234a0f29593 58 SUPERFAMILY SSF55129 1 58 1.05E-20 T 18-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RU84_02100 68eee1853237098482299234a0f29593 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 2.6E-20 T 18-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02100 68eee1853237098482299234a0f29593 58 Gene3D G3DSA:3.30.1390.20 1 58 1.0E-23 T 18-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily RU84_04165 15ec5721fbff04124f40c48d0a56b836 124 Gene3D G3DSA:1.10.3830.10 8 124 8.1E-36 T 18-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RU84_04165 15ec5721fbff04124f40c48d0a56b836 124 Pfam PF01219 Prokaryotic diacylglycerol kinase 21 122 5.8E-32 T 18-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Gene3D G3DSA:3.90.740.10 233 428 0.0 T 18-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Gene3D G3DSA:3.40.50.620 38 582 0.0 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Gene3D G3DSA:1.10.730.10 14 807 0.0 T 18-10-2018 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 132 149 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 540 562 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 501 519 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 158 174 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 190 203 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 573 583 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 221 240 1.3E-48 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Gene3D G3DSA:3.10.330.110 583 645 0.0 T 18-10-2018 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Pfam PF08264 Anticodon-binding domain of tRNA 718 835 1.1E-13 T 18-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 9 874 22.943 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 SUPERFAMILY SSF47323 679 874 1.23E-26 T 18-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 635 675 5.8E-7 T 18-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 432 588 8.1E-8 T 18-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 SUPERFAMILY SSF50677 232 428 5.76E-52 T 18-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Gene3D G3DSA:3.10.20.590 815 874 2.7E-19 T 18-10-2018 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 10 874 0.0 T 18-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Pfam PF09334 tRNA synthetases class I (M) 41 177 3.7E-19 T 18-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 SUPERFAMILY SSF52374 10 685 6.26E-144 T 18-10-2018 RU84_15760 0f6ca8e36947174e54137cd239ad55ee 874 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 227 417 3.1E-73 T 18-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 422 2.2E-158 T 18-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 Gene3D G3DSA:3.40.1260.20 399 504 1.9E-30 T 18-10-2018 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 SMART SM00316 37 117 8.8E-9 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 Pfam PF10150 Ribonuclease E/G family 119 388 3.4E-94 T 18-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 Hamap MF_00970 Ribonuclease E [rne]. 1 1096 35.503 T 18-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 Pfam PF00575 S1 RNA binding domain 36 116 4.4E-10 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 SUPERFAMILY SSF50249 40 123 1.96E-16 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_16350 c052adf149be26bff5b5f1ae5941872c 1110 Gene3D G3DSA:2.40.50.140 31 123 2.7E-28 T 18-10-2018 RU84_07100 f16a8c83558165030c6484808770333d 157 Gene3D G3DSA:1.10.10.10 2 61 1.6E-14 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07100 f16a8c83558165030c6484808770333d 157 SUPERFAMILY SSF54909 71 154 7.11E-20 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_07100 f16a8c83558165030c6484808770333d 157 Pfam PF01037 Lrp/AsnC ligand binding domain 74 148 2.1E-22 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_07100 f16a8c83558165030c6484808770333d 157 SUPERFAMILY SSF46785 6 97 2.02E-13 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07100 f16a8c83558165030c6484808770333d 157 SMART SM00344 11 117 1.3E-22 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_07100 f16a8c83558165030c6484808770333d 157 Pfam PF13412 Winged helix-turn-helix DNA-binding 10 48 2.0E-13 T 18-10-2018 RU84_07100 f16a8c83558165030c6484808770333d 157 Gene3D G3DSA:3.30.70.920 62 145 7.4E-22 T 18-10-2018 RU84_07100 f16a8c83558165030c6484808770333d 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 6.2E-10 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_07100 f16a8c83558165030c6484808770333d 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 6.2E-10 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_07100 f16a8c83558165030c6484808770333d 157 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 6.2E-10 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_04330 a9834d7e04bcd200ab1c5cf7442fa1ca 468 ProSitePatterns PS00218 Amino acid permeases signature. 48 78 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_04330 a9834d7e04bcd200ab1c5cf7442fa1ca 468 Pfam PF00324 Amino acid permease 23 463 2.5E-103 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_04330 a9834d7e04bcd200ab1c5cf7442fa1ca 468 Gene3D G3DSA:1.20.1740.10 14 468 2.1E-62 T 18-10-2018 RU84_04330 a9834d7e04bcd200ab1c5cf7442fa1ca 468 PIRSF PIRSF006060 1 468 8.2E-68 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_13705 8f89c57934ec2567ad0053be803ffd20 157 SUPERFAMILY SSF82784 4 150 5.37E-40 T 18-10-2018 IPR036102 OsmC/Ohr superfamily RU84_13705 8f89c57934ec2567ad0053be803ffd20 157 Gene3D G3DSA:3.30.300.20 1 151 1.6E-47 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_13705 8f89c57934ec2567ad0053be803ffd20 157 Pfam PF02566 OsmC-like protein 53 150 3.6E-12 T 18-10-2018 IPR003718 OsmC/Ohr family RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 SUPERFAMILY SSF46785 1 83 3.17E-24 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 Pfam PF03466 LysR substrate binding domain 89 288 1.3E-35 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 Gene3D G3DSA:3.40.190.10 162 267 3.9E-76 T 18-10-2018 RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.7E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.7E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.7E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 Gene3D G3DSA:3.40.190.10 93 292 3.9E-76 T 18-10-2018 RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 Gene3D G3DSA:1.10.10.10 1 91 5.8E-35 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 SUPERFAMILY SSF53850 89 292 5.34E-32 T 18-10-2018 RU84_11305 350fa97b1cd4ab81efb633c6b55e2890 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.5E-23 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01730 1b4da119527cecb7818a03996afec466 423 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 41 168 1.0E-55 T 18-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 SMART SM00839 189 419 2.4E-88 T 18-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 Gene3D G3DSA:3.40.50.720 187 422 7.0E-84 T 18-10-2018 RU84_01730 1b4da119527cecb7818a03996afec466 423 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 106 119 - T 18-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 220 240 2.8E-30 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 98 112 2.8E-30 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 178 200 2.8E-30 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 347 358 2.8E-30 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 SUPERFAMILY SSF51735 187 422 5.74E-73 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_01730 1b4da119527cecb7818a03996afec466 423 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 187 419 2.0E-71 T 18-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_01730 1b4da119527cecb7818a03996afec466 423 Gene3D G3DSA:3.40.50.10860 43 186 2.6E-64 T 18-10-2018 RU84_01730 1b4da119527cecb7818a03996afec466 423 SUPERFAMILY SSF53223 8 189 2.65E-70 T 18-10-2018 RU84_01730 1b4da119527cecb7818a03996afec466 423 PIRSF PIRSF000185 8 422 5.6E-160 T 18-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RU84_12270 4f7302b2ba329f64cbe92c87103e7fa2 181 Pfam PF09374 Predicted Peptidoglycan domain 97 179 1.4E-16 T 18-10-2018 IPR018537 Peptidoglycan binding domain RU84_12270 4f7302b2ba329f64cbe92c87103e7fa2 181 Gene3D G3DSA:1.20.141.10 2 180 8.7E-42 T 18-10-2018 RU84_12270 4f7302b2ba329f64cbe92c87103e7fa2 181 Pfam PF05838 Glycosyl hydrolase 108 8 90 1.6E-23 T 18-10-2018 IPR008565 Protein of unknown function DUF847 RU84_12270 4f7302b2ba329f64cbe92c87103e7fa2 181 SUPERFAMILY SSF53955 1 179 1.01E-45 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 SUPERFAMILY SSF52518 315 499 1.14E-59 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 15 628 42.22 T 18-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 SUPERFAMILY SSF52518 12 378 3.4E-75 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 Pfam PF02779 Transketolase, pyrimidine binding domain 316 475 4.6E-40 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 18-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 18 625 1.6E-240 T 18-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 SMART SM00861 316 480 2.2E-68 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 16 284 4.6E-105 T 18-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 SUPERFAMILY SSF52922 488 625 1.57E-31 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 Pfam PF02780 Transketolase, C-terminal domain 500 619 5.6E-28 T 18-10-2018 IPR033248 Transketolase, C-terminal domain RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 Gene3D G3DSA:3.40.50.920 499 632 3.0E-38 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_01875 c1afb891df6c504fbb517879bb0ed3ea 634 Gene3D G3DSA:3.40.50.970 315 488 3.8E-68 T 18-10-2018 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 Gene3D G3DSA:3.40.309.10 254 443 2.3E-163 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 Gene3D G3DSA:3.40.605.10 25 467 2.3E-163 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 SUPERFAMILY SSF53720 5 473 1.57E-153 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 35 40 - T 18-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 RU84_05095 320e598c92a414b88a490fcf64c16a6e 476 Pfam PF00171 Aldehyde dehydrogenase family 22 466 1.7E-152 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_14560 0e0b5737bedfafca4f85f5d45ccc7f0d 250 SUPERFAMILY SSF55681 13 188 5.63E-34 T 18-10-2018 RU84_14560 0e0b5737bedfafca4f85f5d45ccc7f0d 250 Pfam PF03099 Biotin/lipoate A/B protein ligase family 39 141 3.2E-9 T 18-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RU84_14560 0e0b5737bedfafca4f85f5d45ccc7f0d 250 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 25 242 1.3E-38 T 18-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_14560 0e0b5737bedfafca4f85f5d45ccc7f0d 250 Gene3D G3DSA:3.30.930.10 1 200 7.0E-37 T 18-10-2018 RU84_00510 5bcc4d8c44bd3be1768939eab4db74ef 252 Gene3D G3DSA:3.40.190.10 27 250 3.1E-87 T 18-10-2018 RU84_00510 5bcc4d8c44bd3be1768939eab4db74ef 252 Pfam PF13531 Bacterial extracellular solute-binding protein 27 250 5.1E-31 T 18-10-2018 RU84_00510 5bcc4d8c44bd3be1768939eab4db74ef 252 Gene3D G3DSA:3.40.190.10 105 214 3.1E-87 T 18-10-2018 RU84_00510 5bcc4d8c44bd3be1768939eab4db74ef 252 SUPERFAMILY SSF53850 25 250 1.8E-31 T 18-10-2018 RU84_14500 b25d8736577226b5290a2a4b5bf55a50 385 SUPERFAMILY SSF53383 4 385 6.36E-88 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_14500 b25d8736577226b5290a2a4b5bf55a50 385 Pfam PF00155 Aminotransferase class I and II 39 383 1.0E-52 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_14500 b25d8736577226b5290a2a4b5bf55a50 385 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 18-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 RU84_14500 b25d8736577226b5290a2a4b5bf55a50 385 Gene3D G3DSA:3.90.1150.10 40 382 8.0E-113 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_14500 b25d8736577226b5290a2a4b5bf55a50 385 Gene3D G3DSA:3.40.640.10 56 292 8.0E-113 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_11505 2992f837287a1f345878a7501bcabd32 339 PIRSF PIRSF000149 1 339 1.3E-114 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 SMART SM00846 2 162 2.8E-71 T 18-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 112 5.9E-34 T 18-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 Gene3D G3DSA:3.40.50.720 3 336 2.7E-128 T 18-10-2018 RU84_11505 2992f837287a1f345878a7501bcabd32 339 SUPERFAMILY SSF55347 162 323 6.85E-57 T 18-10-2018 RU84_11505 2992f837287a1f345878a7501bcabd32 339 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 334 1.7E-110 T 18-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 Gene3D G3DSA:3.30.360.10 161 324 2.7E-128 T 18-10-2018 RU84_11505 2992f837287a1f345878a7501bcabd32 339 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 167 322 3.4E-51 T 18-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 160 167 - T 18-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 SUPERFAMILY SSF51735 3 178 4.28E-49 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11505 2992f837287a1f345878a7501bcabd32 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 239 256 4.6E-28 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 4.6E-28 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 4.6E-28 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 183 199 4.6E-28 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_11505 2992f837287a1f345878a7501bcabd32 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 156 174 4.6E-28 T 18-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 SMART SM00345 18 77 5.3E-11 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 Pfam PF07702 UTRA domain 102 236 1.5E-16 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.2E-5 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.2E-5 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 Gene3D G3DSA:3.40.1410.10 86 241 1.1E-21 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 Gene3D G3DSA:1.10.10.10 9 77 2.3E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 4.5E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 SUPERFAMILY SSF64288 65 242 1.26E-25 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 SUPERFAMILY SSF46785 11 90 1.75E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08340 9c868ef03b2a15a18e3658812f1b789a 243 SMART SM00866 97 237 1.2E-15 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_15345 ace2cc6d589133d12fad9491be198113 178 Pfam PF04751 Protein of unknown function (DUF615) 19 151 3.5E-32 T 18-10-2018 IPR006839 Ribosome-associated, YjgA RU84_15345 ace2cc6d589133d12fad9491be198113 178 Gene3D G3DSA:1.10.60.30 29 104 1.7E-19 T 18-10-2018 RU84_15345 ace2cc6d589133d12fad9491be198113 178 SUPERFAMILY SSF158710 30 169 5.89E-35 T 18-10-2018 IPR023153 PSPTO4464-like domain superfamily RU84_15345 ace2cc6d589133d12fad9491be198113 178 PIRSF PIRSF016183 3 177 2.4E-41 T 18-10-2018 IPR006839 Ribosome-associated, YjgA RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Pfam PF02153 Prephenate dehydrogenase 22 278 7.9E-71 T 18-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 SUPERFAMILY SSF55205 309 741 3.76E-131 T 18-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Gene3D G3DSA:1.10.3660.10 184 288 5.2E-35 T 18-10-2018 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Gene3D G3DSA:3.40.50.720 6 183 1.9E-52 T 18-10-2018 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 ProSitePatterns PS00885 EPSP synthase signature 2. 647 665 - T 18-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 ProSitePatterns PS00104 EPSP synthase signature 1. 393 407 - T 18-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 314 743 33.005 T 18-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 SUPERFAMILY SSF51735 8 176 2.69E-45 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Gene3D G3DSA:3.65.10.10 318 734 4.2E-171 T 18-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 SUPERFAMILY SSF48179 181 288 3.17E-33 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Gene3D G3DSA:3.65.10.10 326 536 4.2E-171 T 18-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 318 739 2.9E-129 T 18-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 RU84_05880 b6dc1b3bb46a0b826bfdf570f237f287 748 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 313 735 3.7E-118 T 18-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RU84_12710 8bbcfd04b7104b32fe4fa5d528f85ed5 159 Pfam PF04170 NlpE N-terminal domain 62 147 3.2E-28 T 18-10-2018 IPR007298 Copper resistance lipoprotein NlpE RU84_12710 8bbcfd04b7104b32fe4fa5d528f85ed5 159 Gene3D G3DSA:2.40.128.640 49 159 3.9E-40 T 18-10-2018 RU84_02645 356ed6fb56bb5ce246f7fbf2d3eed5db 283 Gene3D G3DSA:3.20.20.140 4 256 1.8E-68 T 18-10-2018 RU84_02645 356ed6fb56bb5ce246f7fbf2d3eed5db 283 SMART SM00481 4 69 2.4E-15 T 18-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RU84_02645 356ed6fb56bb5ce246f7fbf2d3eed5db 283 Pfam PF02811 PHP domain 5 120 2.3E-11 T 18-10-2018 IPR004013 PHP domain GO:0003824 RU84_02645 356ed6fb56bb5ce246f7fbf2d3eed5db 283 SUPERFAMILY SSF89550 4 268 2.16E-42 T 18-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RU84_02645 356ed6fb56bb5ce246f7fbf2d3eed5db 283 Gene3D G3DSA:1.10.150.650 102 175 1.8E-68 T 18-10-2018 RU84_11665 5a2f774d37585ecc252948bd0a437f1b 152 Pfam PF01047 MarR family 41 97 1.3E-9 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_11665 5a2f774d37585ecc252948bd0a437f1b 152 SUPERFAMILY SSF46785 15 150 3.45E-26 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11665 5a2f774d37585ecc252948bd0a437f1b 152 SMART SM00347 34 134 1.6E-16 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_11665 5a2f774d37585ecc252948bd0a437f1b 152 Gene3D G3DSA:1.10.10.10 1 152 4.3E-34 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10745 c99f25747bd9182db8f949f22c670af2 353 SUPERFAMILY SSF63380 2 104 6.0E-23 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 141 150 7.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 36 48 7.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 116 135 7.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 212 220 7.4E-7 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 SUPERFAMILY SSF52343 93 242 7.73E-32 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_10745 c99f25747bd9182db8f949f22c670af2 353 SUPERFAMILY SSF54292 236 350 4.04E-29 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 300 308 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 352 3.0E-131 T 18-10-2018 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 Gene3D G3DSA:2.40.30.10 2 104 2.7E-23 T 18-10-2018 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 Gene3D G3DSA:3.40.50.80 112 244 4.4E-30 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_10745 c99f25747bd9182db8f949f22c670af2 353 Pfam PF00175 Oxidoreductase NAD-binding domain 118 226 1.7E-18 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 Gene3D G3DSA:3.10.20.30 245 353 7.0E-29 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 4.1E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 36 46 4.1E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 4.1E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 4.1E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 212 220 4.1E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 Pfam PF00970 Oxidoreductase FAD-binding domain 16 103 2.1E-9 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_10745 c99f25747bd9182db8f949f22c670af2 353 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 268 343 4.8E-18 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_05200 4672a7ef20e817fb9f6b9de18f829aad 309 SUPERFAMILY SSF46785 4 112 1.7E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_05200 4672a7ef20e817fb9f6b9de18f829aad 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.0E-20 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_05200 4672a7ef20e817fb9f6b9de18f829aad 309 Gene3D G3DSA:1.10.10.10 3 90 3.9E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05200 4672a7ef20e817fb9f6b9de18f829aad 309 Pfam PF03466 LysR substrate binding domain 92 296 4.0E-27 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_05200 4672a7ef20e817fb9f6b9de18f829aad 309 Gene3D G3DSA:3.40.190.290 93 296 5.5E-43 T 18-10-2018 RU84_05200 4672a7ef20e817fb9f6b9de18f829aad 309 SUPERFAMILY SSF53850 90 300 1.38E-32 T 18-10-2018 RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 SUPERFAMILY SSF53474 11 373 7.96E-100 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 Pfam PF00561 alpha/beta hydrolase fold 49 358 2.1E-31 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 Gene3D G3DSA:3.40.50.1820 24 359 1.2E-139 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 19 372 1.4E-139 T 18-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 Gene3D G3DSA:1.10.1740.110 186 291 1.2E-139 T 18-10-2018 RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 8 373 29.048 T 18-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 RU84_15995 3f79bf42c1fe796832ea8597b55cf925 386 PIRSF PIRSF000443 2 381 2.2E-132 T 18-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 3.7E-19 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 SUPERFAMILY SSF46785 7 81 3.02E-23 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 SMART SM00345 18 77 1.7E-17 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 Gene3D G3DSA:1.10.10.10 13 80 3.0E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 SMART SM00866 98 240 3.5E-33 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 SUPERFAMILY SSF64288 65 246 1.16E-45 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 3.6E-11 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 3.6E-11 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 Pfam PF07702 UTRA domain 99 240 4.1E-35 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_08715 7f900a93e6678e750b988dca943bcd6c 247 Gene3D G3DSA:3.40.1410.10 81 247 3.2E-42 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_17965 9f1a6eb172906e469a920b228f750bde 420 SUPERFAMILY SSF48179 185 281 5.61E-23 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 SUPERFAMILY SSF52413 285 414 5.62E-33 T 18-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 Gene3D G3DSA:3.40.50.720 215 420 2.9E-63 T 18-10-2018 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 Gene3D G3DSA:3.40.50.720 1 186 1.1E-15 T 18-10-2018 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 SUPERFAMILY SSF51735 1 188 1.3E-9 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17965 9f1a6eb172906e469a920b228f750bde 420 SMART SM00984 300 404 7.6E-37 T 18-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 PIRSF PIRSF000124 1 419 8.5E-109 T 18-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 PIRSF PIRSF500134 1 420 1.1E-116 T 18-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 300 404 7.2E-26 T 18-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 400 8.7E-58 T 18-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 Gene3D G3DSA:1.20.5.100 187 214 1.1E-10 T 18-10-2018 RU84_17965 9f1a6eb172906e469a920b228f750bde 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 186 276 4.0E-24 T 18-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 RU84_07800 b7898b3e7c67ad2e21f8b6ce356f1d7a 226 Gene3D G3DSA:3.30.2010.10 125 214 1.3E-16 T 18-10-2018 RU84_07800 b7898b3e7c67ad2e21f8b6ce356f1d7a 226 Pfam PF01863 Protein of unknown function DUF45 17 214 1.1E-47 T 18-10-2018 IPR002725 Protein of unknown function DUF45 RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 Pfam PF00571 CBS domain 381 430 4.1E-4 T 18-10-2018 IPR000644 CBS domain RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 SUPERFAMILY SSF54631 300 433 1.0E-18 T 18-10-2018 RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 Gene3D G3DSA:3.10.580.10 295 443 7.9E-37 T 18-10-2018 RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 SMART SM01091 444 524 9.4E-26 T 18-10-2018 IPR005170 Transporter-associated domain RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 Pfam PF03471 Transporter associated domain 445 521 6.8E-20 T 18-10-2018 IPR005170 Transporter-associated domain RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 Pfam PF03741 Integral membrane protein TerC family 17 205 1.4E-50 T 18-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 Gene3D G3DSA:3.30.465.10 444 525 9.0E-21 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_17365 d94583930bb67da2866cedaa4c4ef269 530 SUPERFAMILY SSF56176 444 521 9.82E-20 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_07455 c12e97f3e2797031fcd5547bc7c5d7af 184 SUPERFAMILY SSF55194 1 184 4.06E-65 T 18-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 RU84_07455 c12e97f3e2797031fcd5547bc7c5d7af 184 Gene3D G3DSA:1.10.132.20 12 181 5.0E-61 T 18-10-2018 RU84_07455 c12e97f3e2797031fcd5547bc7c5d7af 184 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 184 6.8E-64 T 18-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RU84_07455 c12e97f3e2797031fcd5547bc7c5d7af 184 Pfam PF01765 Ribosome recycling factor 21 182 3.8E-58 T 18-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 RU84_07455 c12e97f3e2797031fcd5547bc7c5d7af 184 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 184 25.201 T 18-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 RU84_07455 c12e97f3e2797031fcd5547bc7c5d7af 184 Gene3D G3DSA:3.30.1360.40 31 104 5.0E-61 T 18-10-2018 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 2 401 8.6E-227 T 18-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 SUPERFAMILY SSF53901 3 276 3.2E-83 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 Pfam PF02803 Thiolase, C-terminal domain 276 400 1.9E-46 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 PIRSF PIRSF000429 1 402 1.9E-133 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 SUPERFAMILY SSF53901 277 400 5.97E-45 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 Gene3D G3DSA:3.40.47.10 6 282 1.0E-158 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 Pfam PF00108 Thiolase, N-terminal domain 5 268 2.2E-80 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 2.8E-140 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 Gene3D G3DSA:3.40.47.10 141 398 1.0E-158 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08110 8b7bd05bbae0aa1a37b11d1041b104b0 404 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 18-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Gene3D G3DSA:2.60.34.10 382 522 1.7E-64 T 18-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Gene3D G3DSA:3.30.420.40 5 378 3.2E-165 T 18-10-2018 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Gene3D G3DSA:1.20.1270.10 523 606 1.4E-20 T 18-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 387 406 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 137 157 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 468 484 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 53 61 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 PRINTS PR00301 70kDa heat shock protein signature 333 349 1.2E-76 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 SUPERFAMILY SSF100920 383 539 8.37E-60 T 18-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 SUPERFAMILY SSF53067 2 182 5.18E-65 T 18-10-2018 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Gene3D G3DSA:3.30.420.40 179 365 3.2E-165 T 18-10-2018 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Pfam PF00012 Hsp70 protein 4 603 6.2E-260 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 3.6E-283 T 18-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Gene3D G3DSA:3.90.640.10 228 315 3.2E-165 T 18-10-2018 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 641 36.113 T 18-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 SUPERFAMILY SSF100934 506 603 7.72E-18 T 18-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RU84_18280 e5b6b1c910bfcf5655d702a5d84d86c7 646 SUPERFAMILY SSF53067 186 381 5.44E-67 T 18-10-2018 RU84_00915 25a9b2c36a69e02a27dcca12dc5db7d8 230 SUPERFAMILY SSF81324 112 216 8.11E-11 T 18-10-2018 RU84_00915 25a9b2c36a69e02a27dcca12dc5db7d8 230 Pfam PF07885 Ion channel 131 215 1.4E-5 T 18-10-2018 IPR013099 Potassium channel domain RU84_00915 25a9b2c36a69e02a27dcca12dc5db7d8 230 Gene3D G3DSA:1.10.287.70 113 221 3.5E-10 T 18-10-2018 RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 Gene3D G3DSA:1.10.10.10 2 67 1.4E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 SUPERFAMILY SSF53383 91 466 1.45E-87 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 SMART SM00345 7 66 6.6E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 Gene3D G3DSA:3.90.1150.10 97 461 3.5E-83 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 SUPERFAMILY SSF46785 5 76 2.37E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 Pfam PF00155 Aminotransferase class I and II 145 456 1.0E-33 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 2.0E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10080 2bbd23d506b0738a341233ac228db6c9 472 Gene3D G3DSA:3.40.640.10 140 359 3.5E-83 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_14660 1887cb0aea6ce5de92bc2ec773c2bc04 189 SUPERFAMILY SSF46689 3 75 3.39E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_14660 1887cb0aea6ce5de92bc2ec773c2bc04 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 60 3.4E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14660 1887cb0aea6ce5de92bc2ec773c2bc04 189 Gene3D G3DSA:1.10.357.10 2 186 1.3E-28 T 18-10-2018 RU84_14660 1887cb0aea6ce5de92bc2ec773c2bc04 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 6.9E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14660 1887cb0aea6ce5de92bc2ec773c2bc04 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 6.9E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14660 1887cb0aea6ce5de92bc2ec773c2bc04 189 SUPERFAMILY SSF48498 80 181 1.89E-11 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_00480 0501ad88e874fd6486b4aaea80b2c634 147 Gene3D G3DSA:3.50.80.10 1 145 4.2E-54 T 18-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RU84_00480 0501ad88e874fd6486b4aaea80b2c634 147 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 7.8E-56 T 18-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RU84_00480 0501ad88e874fd6486b4aaea80b2c634 147 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 32.506 T 18-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RU84_00480 0501ad88e874fd6486b4aaea80b2c634 147 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 1.2E-50 T 18-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 RU84_00480 0501ad88e874fd6486b4aaea80b2c634 147 SUPERFAMILY SSF69500 1 144 1.16E-54 T 18-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily RU84_06435 9b211f71db3b05bced0ac59600b29931 432 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 14 431 36.284 T 18-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 48 63 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_06435 9b211f71db3b05bced0ac59600b29931 432 Pfam PF00375 Sodium:dicarboxylate symporter family 21 413 1.3E-106 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 307 330 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_06435 9b211f71db3b05bced0ac59600b29931 432 Gene3D G3DSA:1.10.3860.10 8 431 4.2E-119 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 SUPERFAMILY SSF118215 21 414 1.27E-115 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 PRINTS PR00173 Glutamate-aspartate symporter signature 339 358 1.2E-32 T 18-10-2018 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 PRINTS PR00173 Glutamate-aspartate symporter signature 86 111 1.2E-32 T 18-10-2018 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 PRINTS PR00173 Glutamate-aspartate symporter signature 304 330 1.2E-32 T 18-10-2018 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 PRINTS PR00173 Glutamate-aspartate symporter signature 157 179 1.2E-32 T 18-10-2018 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 PRINTS PR00173 Glutamate-aspartate symporter signature 56 76 1.2E-32 T 18-10-2018 RU84_06435 9b211f71db3b05bced0ac59600b29931 432 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 1.2E-32 T 18-10-2018 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 Gene3D G3DSA:3.30.470.130 1 448 2.5E-194 T 18-10-2018 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 595 624 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 2.2E-44 T 18-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 Pfam PF00364 Biotin-requiring enzyme 578 644 7.9E-16 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 SUPERFAMILY SSF51230 570 644 3.27E-19 T 18-10-2018 IPR011053 Single hybrid motif RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 Gene3D G3DSA:2.40.50.100 576 644 1.9E-22 T 18-10-2018 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 SUPERFAMILY SSF51246 332 447 1.26E-36 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 SMART SM00878 337 443 6.5E-48 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 SUPERFAMILY SSF52440 2 114 3.17E-48 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 323 1.6E-74 T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 5.4E-32 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_02415 549ca9bc1b8e3ab74d2551acbd2afce3 646 SUPERFAMILY SSF56059 116 327 1.47E-64 T 18-10-2018 RU84_01255 75226437212a625825f44d004e0e1050 254 Gene3D G3DSA:3.40.50.2300 7 141 1.2E-40 T 18-10-2018 RU84_01255 75226437212a625825f44d004e0e1050 254 SMART SM00862 172 248 6.2E-23 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_01255 75226437212a625825f44d004e0e1050 254 SMART SM00448 21 132 1.1E-43 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_01255 75226437212a625825f44d004e0e1050 254 SUPERFAMILY SSF52172 22 143 7.12E-42 T 18-10-2018 IPR011006 CheY-like superfamily RU84_01255 75226437212a625825f44d004e0e1050 254 SUPERFAMILY SSF46894 154 250 6.52E-27 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_01255 75226437212a625825f44d004e0e1050 254 Gene3D G3DSA:1.10.10.10 146 254 3.2E-37 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01255 75226437212a625825f44d004e0e1050 254 Pfam PF00486 Transcriptional regulatory protein, C terminal 173 248 1.5E-21 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_01255 75226437212a625825f44d004e0e1050 254 Pfam PF00072 Response regulator receiver domain 23 133 1.7E-29 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03850 c93f5687e31c698808842be7dc7dbd5c 157 SUPERFAMILY SSF75217 2 155 4.38E-43 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_03850 c93f5687e31c698808842be7dc7dbd5c 157 PIRSF PIRSF029256 1 157 3.0E-60 T 18-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RU84_03850 c93f5687e31c698808842be7dc7dbd5c 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 154 30.544 T 18-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 RU84_03850 c93f5687e31c698808842be7dc7dbd5c 157 Pfam PF00588 SpoU rRNA Methylase family 2 145 1.9E-34 T 18-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RU84_03850 c93f5687e31c698808842be7dc7dbd5c 157 Gene3D G3DSA:3.40.1280.10 1 156 1.6E-58 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Pfam PF00270 DEAD/DEAH box helicase 65 216 3.2E-7 T 18-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Pfam PF00271 Helicase conserved C-terminal domain 288 403 2.3E-11 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Pfam PF11898 Domain of unknown function (DUF3418) 709 1280 3.5E-147 T 18-10-2018 IPR024590 RNA helicase HrpA, C-terminal RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 SMART SM00487 58 242 4.1E-30 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Pfam PF04408 Helicase associated domain (HA2) 466 550 3.3E-16 T 18-10-2018 IPR007502 Helicase-associated domain GO:0004386 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Gene3D G3DSA:1.20.120.1080 447 550 5.2E-18 T 18-10-2018 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 16 1280 0.0 T 18-10-2018 IPR010222 RNA helicase HrpA GO:0004004 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 SMART SM00847 464 555 1.2E-33 T 18-10-2018 IPR007502 Helicase-associated domain GO:0004386 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Gene3D G3DSA:3.40.50.300 236 421 6.1E-52 T 18-10-2018 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 SMART SM00490 303 404 1.0E-12 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 SUPERFAMILY SSF52540 60 563 5.96E-102 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 SMART SM00382 75 384 5.7E-4 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Gene3D G3DSA:3.40.50.300 10 235 9.1E-76 T 18-10-2018 RU84_11350 26630010d0a84e561a47e2404fdb6b0a 1285 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 619 694 1.0E-14 T 18-10-2018 IPR011709 Domain of unknown function DUF1605 RU84_05255 40488ee1db4c7f523bbb8a7a25e020b1 100 Pfam PF04328 Selenoprotein, putative 36 100 3.3E-23 T 18-10-2018 IPR007423 Selenoprotein, putative RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 SUPERFAMILY SSF51735 164 349 1.97E-59 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 18-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 Gene3D G3DSA:3.90.180.10 9 374 5.2E-132 T 18-10-2018 RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 SMART SM00829 8 385 0.0027 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 SUPERFAMILY SSF50129 1 197 1.11E-61 T 18-10-2018 IPR011032 GroES-like superfamily RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 Gene3D G3DSA:3.40.50.720 178 338 5.2E-132 T 18-10-2018 RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 1.0E-12 T 18-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated RU84_18760 86c7898d5d20ce319703d1bab0f61143 387 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 151 2.0E-29 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_09550 3b0c17de3af44aa3c216d3ef86cf5f6b 496 Pfam PF00474 Sodium:solute symporter family 35 437 2.5E-132 T 18-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RU84_09550 3b0c17de3af44aa3c216d3ef86cf5f6b 496 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 4.8E-123 T 18-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RU84_09550 3b0c17de3af44aa3c216d3ef86cf5f6b 496 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 492 6.1E-219 T 18-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 RU84_09550 3b0c17de3af44aa3c216d3ef86cf5f6b 496 Gene3D G3DSA:1.20.1730.10 24 495 5.7E-94 T 18-10-2018 IPR038377 Sodium/glucose symporter superfamily RU84_09550 3b0c17de3af44aa3c216d3ef86cf5f6b 496 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 18-10-2018 IPR018212 Sodium/solute symporter, conserved site RU84_09550 3b0c17de3af44aa3c216d3ef86cf5f6b 496 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 18-10-2018 IPR018212 Sodium/solute symporter, conserved site RU84_06460 7544209cd71f20b7fca42bc30e4e31ba 288 Gene3D G3DSA:3.40.190.10 117 228 1.0E-78 T 18-10-2018 RU84_06460 7544209cd71f20b7fca42bc30e4e31ba 288 Pfam PF03180 NLPA lipoprotein 41 276 2.6E-68 T 18-10-2018 IPR004872 Lipoprotein NlpA family RU84_06460 7544209cd71f20b7fca42bc30e4e31ba 288 SUPERFAMILY SSF53850 37 277 8.8E-67 T 18-10-2018 RU84_06460 7544209cd71f20b7fca42bc30e4e31ba 288 PIRSF PIRSF002854 1 279 3.4E-74 T 18-10-2018 IPR004872 Lipoprotein NlpA family RU84_06460 7544209cd71f20b7fca42bc30e4e31ba 288 Gene3D G3DSA:3.40.190.10 40 269 1.0E-78 T 18-10-2018 RU84_10110 948a0a8da3534882c73ccc7989d65635 275 SUPERFAMILY SSF52096 26 218 5.97E-19 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10110 948a0a8da3534882c73ccc7989d65635 275 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 13 274 9.4E-99 T 18-10-2018 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 RU84_10110 948a0a8da3534882c73ccc7989d65635 275 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 17 274 8.9E-92 T 18-10-2018 RU84_10110 948a0a8da3534882c73ccc7989d65635 275 Gene3D G3DSA:3.90.226.10 2 263 6.3E-26 T 18-10-2018 RU84_09880 f53273bcbf00336a660167bed51dd05d 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_09880 f53273bcbf00336a660167bed51dd05d 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_09880 f53273bcbf00336a660167bed51dd05d 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_09880 f53273bcbf00336a660167bed51dd05d 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_19095 f53273bcbf00336a660167bed51dd05d 336 Pfam PF00665 Integrase core domain 175 280 2.7E-15 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_19095 f53273bcbf00336a660167bed51dd05d 336 Gene3D G3DSA:3.30.420.10 167 328 1.6E-10 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_19095 f53273bcbf00336a660167bed51dd05d 336 SUPERFAMILY SSF53098 175 321 1.52E-27 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_19095 f53273bcbf00336a660167bed51dd05d 336 Pfam PF13936 Helix-turn-helix domain 2 46 2.4E-12 T 18-10-2018 IPR025246 Transposase IS30-like HTH domain RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF50341 1215 1352 5.89E-22 T 18-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:1.20.120.160 521 656 2.1E-22 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00073 196 291 0.05 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00073 726 823 2.4E-10 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00073 23 122 0.04 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00073 521 618 8.1E-12 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00260 1208 1354 1.1E-27 T 18-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM01231 893 1030 4.0E-9 T 18-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:1.20.120.160 729 852 1.3E-16 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:1.20.120.160 23 150 1.2E-17 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00387 1075 1216 7.1E-24 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF47226 520 637 1.18E-24 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF01584 CheW-like domain 1221 1356 1.4E-21 T 18-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:3.40.50.12740 1379 1505 1.4E-38 T 18-10-2018 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1176 1194 9.0E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1200 1213 9.0E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1120 1134 9.0E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:2.30.30.40 1216 1349 3.4E-34 T 18-10-2018 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF00072 Response regulator receiver domain 1382 1493 3.1E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF47226 23 112 1.19E-18 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1078 1214 6.1E-17 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:3.30.565.10 1029 1215 7.9E-52 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF47226 197 299 2.09E-14 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:2.40.50.180 1239 1308 3.4E-34 T 18-10-2018 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF47226 729 812 1.06E-16 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SMART SM00448 1380 1493 2.4E-37 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Gene3D G3DSA:1.20.120.160 193 326 1.5E-13 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF55874 1033 1213 2.36E-35 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF01627 Hpt domain 25 106 1.1E-11 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF01627 Hpt domain 199 281 8.7E-10 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF01627 Hpt domain 732 796 1.1E-12 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 Pfam PF01627 Hpt domain 523 612 4.4E-14 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_03395 7c48ac130958ce00dfd08c71ef77a5c7 1506 SUPERFAMILY SSF52172 1381 1497 9.96E-37 T 18-10-2018 IPR011006 CheY-like superfamily RU84_12600 06ccc6d93402f73a32debc53617704fc 194 PIRSF PIRSF006806 1 189 3.0E-33 T 18-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RU84_12600 06ccc6d93402f73a32debc53617704fc 194 SUPERFAMILY SSF100950 6 193 1.53E-43 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_12600 06ccc6d93402f73a32debc53617704fc 194 Gene3D G3DSA:3.40.50.10420 5 194 1.5E-45 T 18-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily RU84_12600 06ccc6d93402f73a32debc53617704fc 194 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 186 1.1E-33 T 18-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RU84_12600 06ccc6d93402f73a32debc53617704fc 194 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 7 186 5.6E-41 T 18-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase RU84_08120 3b7a1f4b0c98f9ab8245b1a1dbcc904f 223 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 18-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 RU84_08120 3b7a1f4b0c98f9ab8245b1a1dbcc904f 223 SMART SM00882 6 219 3.1E-81 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08120 3b7a1f4b0c98f9ab8245b1a1dbcc904f 223 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 220 6.2E-122 T 18-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 RU84_08120 3b7a1f4b0c98f9ab8245b1a1dbcc904f 223 Pfam PF01144 Coenzyme A transferase 8 218 2.6E-73 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08120 3b7a1f4b0c98f9ab8245b1a1dbcc904f 223 Gene3D G3DSA:3.40.1080.10 1 218 7.3E-80 T 18-10-2018 RU84_08120 3b7a1f4b0c98f9ab8245b1a1dbcc904f 223 SUPERFAMILY SSF100950 2 221 1.08E-79 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PIRSF PIRSF002560 1 154 1.9E-58 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 8.1E-45 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 Pfam PF00210 Ferritin-like domain 8 143 2.0E-34 T 18-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PRINTS PR00601 Bacterioferritin signature 3 22 5.0E-41 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PRINTS PR00601 Bacterioferritin signature 85 105 5.0E-41 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PRINTS PR00601 Bacterioferritin signature 23 43 5.0E-41 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PRINTS PR00601 Bacterioferritin signature 44 64 5.0E-41 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PRINTS PR00601 Bacterioferritin signature 106 126 5.0E-41 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 PRINTS PR00601 Bacterioferritin signature 128 149 5.0E-41 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 SUPERFAMILY SSF47240 1 154 1.21E-45 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_14530 6cc8852d14123c849d71c6120fab7b3b 154 Gene3D G3DSA:1.20.1260.10 1 154 6.3E-59 T 18-10-2018 IPR012347 Ferritin-like RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 Pfam PF00248 Aldo/keto reductase family 8 251 3.1E-49 T 18-10-2018 IPR023210 NADP-dependent oxidoreductase domain RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 5.0E-44 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 5.0E-44 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 5.0E-44 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 5.0E-44 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 5.0E-44 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PIRSF PIRSF000097 102 265 3.7E-36 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 PIRSF PIRSF000097 1 106 7.3E-34 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 18-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 18-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 Gene3D G3DSA:3.20.20.100 1 267 3.6E-92 T 18-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RU84_00210 00559eebd8d3287230a16da1c94f4f20 267 SUPERFAMILY SSF51430 2 262 2.88E-81 T 18-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RU84_01915 c980270dc02a60fe20fec1d2269bc428 95 SUPERFAMILY SSF52091 9 94 4.71E-9 T 18-10-2018 IPR036513 STAS domain superfamily RU84_01915 c980270dc02a60fe20fec1d2269bc428 95 Pfam PF13466 STAS domain 9 84 5.4E-8 T 18-10-2018 IPR002645 STAS domain RU84_01915 c980270dc02a60fe20fec1d2269bc428 95 Gene3D G3DSA:3.30.750.24 8 95 1.0E-8 T 18-10-2018 IPR036513 STAS domain superfamily RU84_15255 903681481265f7d378dd4bad52000e13 506 SUPERFAMILY SSF109604 313 502 2.29E-46 T 18-10-2018 RU84_15255 903681481265f7d378dd4bad52000e13 506 PIRSF PIRSF001267 1 502 2.4E-197 T 18-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 RU84_15255 903681481265f7d378dd4bad52000e13 506 Gene3D G3DSA:1.10.3210.10 310 505 3.6E-58 T 18-10-2018 RU84_15255 903681481265f7d378dd4bad52000e13 506 Gene3D G3DSA:3.30.420.150 115 295 4.1E-89 T 18-10-2018 RU84_15255 903681481265f7d378dd4bad52000e13 506 Pfam PF01966 HD domain 335 415 1.0E-4 T 18-10-2018 IPR006674 HD domain RU84_15255 903681481265f7d378dd4bad52000e13 506 Gene3D G3DSA:3.30.420.40 12 303 4.1E-89 T 18-10-2018 RU84_15255 903681481265f7d378dd4bad52000e13 506 SUPERFAMILY SSF53067 135 310 4.42E-47 T 18-10-2018 RU84_15255 903681481265f7d378dd4bad52000e13 506 Pfam PF02541 Ppx/GppA phosphatase family 25 308 8.8E-82 T 18-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 RU84_15255 903681481265f7d378dd4bad52000e13 506 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 11 306 1.1E-96 T 18-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 RU84_15255 903681481265f7d378dd4bad52000e13 506 SUPERFAMILY SSF53067 11 131 1.05E-34 T 18-10-2018 RU84_09750 01f23717891287da2445648dd55ed5a8 181 SUPERFAMILY SSF69593 26 141 1.96E-15 T 18-10-2018 RU84_09750 01f23717891287da2445648dd55ed5a8 181 SMART SM00563 29 145 1.3E-16 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_09750 01f23717891287da2445648dd55ed5a8 181 Pfam PF01553 Acyltransferase 25 138 3.8E-13 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 SUPERFAMILY SSF69279 24 197 3.51E-40 T 18-10-2018 RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Pfam PF05954 Phage late control gene D protein (GPD) 43 385 1.1E-61 T 18-10-2018 RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Gene3D G3DSA:3.30.1920.30 254 336 3.6E-47 T 18-10-2018 RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 24 586 8.8E-71 T 18-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Gene3D G3DSA:2.30.110.50 31 378 3.6E-47 T 18-10-2018 RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 589 1.0E-57 T 18-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 691 839 1.3E-43 T 18-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 562 669 3.8E-37 T 18-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Gene3D G3DSA:2.40.50.230 430 539 8.2E-32 T 18-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 SUPERFAMILY SSF69255 439 533 6.8E-25 T 18-10-2018 RU84_10945 a77cbeb91a95db3b129f32ef3c1347ea 1058 Gene3D G3DSA:3.55.50.10 111 221 3.6E-47 T 18-10-2018 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 SUPERFAMILY SSF55008 100 160 6.68E-8 T 18-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 Pfam PF01545 Cation efflux family 262 432 1.0E-12 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 Pfam PF00403 Heavy-metal-associated domain 100 156 5.6E-5 T 18-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 SUPERFAMILY SSF55008 177 238 1.44E-9 T 18-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 Gene3D G3DSA:3.30.70.100 165 245 4.2E-5 T 18-10-2018 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 Gene3D G3DSA:3.30.70.100 94 164 2.5E-5 T 18-10-2018 RU84_15535 6ac272e10e16735223db2db83c843ad5 435 Gene3D G3DSA:1.20.1510.10 258 434 7.5E-11 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_15535 6ac272e10e16735223db2db83c843ad5 435 SUPERFAMILY SSF161111 257 432 6.8E-31 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:3.30.70.1430 567 663 0.0 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82693 39 131 1.15E-22 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82693 565 664 8.37E-24 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:1.20.1640.10 513 1017 0.0 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1032 0.0 T 18-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82714 720 801 1.57E-16 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82714 184 273 5.1E-22 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:3.30.70.1440 664 860 0.0 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:3.30.2090.10 716 804 0.0 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Pfam PF00873 AcrB/AcrD/AcrF family 2 1020 0.0 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:3.30.70.1430 39 812 0.0 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82866 803 1022 6.15E-42 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 1.6E-96 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82866 297 498 1.02E-50 T 18-10-2018 RU84_08605 c828f13a5661b02e1e58069e569ef0a2 1036 SUPERFAMILY SSF82693 136 330 8.89E-26 T 18-10-2018 RU84_12120 b421a16efda1f1a1cdc60b34a4e57de1 336 Gene3D G3DSA:1.10.3720.10 125 331 1.6E-16 T 18-10-2018 IPR035906 MetI-like superfamily RU84_12120 b421a16efda1f1a1cdc60b34a4e57de1 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 335 1.0E-26 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_12120 b421a16efda1f1a1cdc60b34a4e57de1 336 SUPERFAMILY SSF161098 132 319 1.57E-20 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 716 0.0 T 18-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 SUPERFAMILY SSF51645 3 717 2.09E-293 T 18-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 Hamap MF_00641 Malate synthase G [glcB]. 1 721 378.846 T 18-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 Gene3D G3DSA:3.20.20.360 10 578 3.1E-265 T 18-10-2018 RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 Gene3D G3DSA:2.170.170.11 132 261 3.1E-265 T 18-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 Pfam PF01274 Malate synthase 17 693 1.1E-163 T 18-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 RU84_09295 9c4bf3525216ff45e3b0c94aa93a06ba 721 Gene3D G3DSA:1.20.1220.12 579 721 1.3E-72 T 18-10-2018 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 4 446 69.222 T 18-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 SUPERFAMILY SSF69864 193 445 6.67E-82 T 18-10-2018 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 Gene3D G3DSA:3.40.50.620 17 194 8.4E-119 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 Gene3D G3DSA:3.90.1260.10 77 370 8.4E-119 T 18-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 Gene3D G3DSA:1.10.287.400 380 443 2.4E-31 T 18-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 16 422 2.4E-166 T 18-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 132 143 - T 18-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 Pfam PF00764 Arginosuccinate synthase 19 412 4.5E-62 T 18-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 SUPERFAMILY SSF52402 7 191 3.97E-35 T 18-10-2018 RU84_12080 ccefa28f7e6cefca64c045fca11a0dfc 447 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 20 28 - T 18-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 SUPERFAMILY SSF51735 27 282 3.56E-45 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 224 3.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 245 265 3.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 164 3.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 105 116 3.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 31 48 3.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 Pfam PF00106 short chain dehydrogenase 30 230 1.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_05270 ccab5cc63991c6ab9734cd8361a28e90 321 Gene3D G3DSA:3.40.50.720 23 320 1.7E-65 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 Gene3D G3DSA:1.10.287.470 130 231 1.7E-7 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 SUPERFAMILY SSF111369 137 305 1.06E-17 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 Gene3D G3DSA:2.40.50.100 65 98 4.9E-16 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 Pfam PF13437 HlyD family secretion protein 232 349 3.2E-15 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 347 362 3.4E-6 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 3.4E-6 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 SUPERFAMILY SSF111369 63 120 3.27E-11 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 Gene3D G3DSA:1.10.287.470 99 128 4.9E-16 T 18-10-2018 RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 Pfam PF13533 Biotin-lipoyl like 66 111 9.3E-16 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_08375 4a440dc2b764e431e3f77afc9f3cf749 362 Gene3D G3DSA:2.40.30.170 247 362 3.7E-32 T 18-10-2018 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 PIRSF PIRSF000071 1 54 3.4E-26 T 18-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 PRINTS PR00163 Rubredoxin signature 3 19 8.8E-11 T 18-10-2018 IPR024935 Rubredoxin domain GO:0005506 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 PRINTS PR00163 Rubredoxin signature 33 49 8.8E-11 T 18-10-2018 IPR024935 Rubredoxin domain GO:0005506 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 18-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 Gene3D G3DSA:2.20.28.10 1 54 1.7E-29 T 18-10-2018 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 SUPERFAMILY SSF57802 1 53 1.65E-23 T 18-10-2018 RU84_12775 931e04fdbd921f77c625f5532e432f01 54 Pfam PF00301 Rubredoxin 3 49 3.2E-25 T 18-10-2018 IPR024935 Rubredoxin domain GO:0005506 RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 Pfam PF07715 TonB-dependent Receptor Plug Domain 118 215 2.5E-9 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 119 774 6.1E-112 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 Gene3D G3DSA:2.40.170.20 233 774 3.0E-75 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 SUPERFAMILY SSF56935 80 774 1.92E-97 T 18-10-2018 RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 757 774 - T 18-10-2018 IPR010917 TonB-dependent receptor, conserved site RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 Gene3D G3DSA:2.170.130.10 91 231 3.2E-17 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_05340 99fec1e2bdf68933b684b712999c5b0f 774 Pfam PF00593 TonB dependent receptor 307 772 1.5E-28 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_05720 271be9964f558c29242d18e7d3c800f1 417 Pfam PF00464 Serine hydroxymethyltransferase 7 385 5.4E-183 T 18-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RU84_05720 271be9964f558c29242d18e7d3c800f1 417 SUPERFAMILY SSF53383 4 415 2.48E-184 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_05720 271be9964f558c29242d18e7d3c800f1 417 Gene3D G3DSA:3.90.1150.10 9 394 8.9E-188 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_05720 271be9964f558c29242d18e7d3c800f1 417 Gene3D G3DSA:3.40.640.10 36 288 8.9E-188 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_05720 271be9964f558c29242d18e7d3c800f1 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 18-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RU84_05720 271be9964f558c29242d18e7d3c800f1 417 PIRSF PIRSF000412 2 417 4.4E-170 T 18-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RU84_05720 271be9964f558c29242d18e7d3c800f1 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 6 416 53.339 T 18-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 225 2.8E-56 T 18-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 102.394 T 18-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 Gene3D G3DSA:1.10.1270.20 170 246 3.4E-30 T 18-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 SUPERFAMILY SSF75217 3 243 8.5E-96 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 Gene3D G3DSA:3.40.1280.10 1 169 5.1E-63 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 PIRSF PIRSF000386 1 246 2.5E-91 T 18-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RU84_01600 ccc0d876793821b6d0beb8ec9012d29a 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 2 238 1.1E-90 T 18-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 PRINTS PR00139 Asparaginase/glutaminase family signature 289 307 1.4E-20 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 PRINTS PR00139 Asparaginase/glutaminase family signature 108 126 1.4E-20 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 PRINTS PR00139 Asparaginase/glutaminase family signature 28 39 1.4E-20 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 Pfam PF00710 Asparaginase, N-terminal 27 218 2.6E-51 T 18-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 SMART SM00870 27 349 1.2E-124 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 PIRSF PIRSF500176 24 355 7.9E-84 T 18-10-2018 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 SUPERFAMILY SSF53774 26 354 8.5E-93 T 18-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 PIRSF PIRSF001220 22 355 3.0E-90 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 30 38 - T 18-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 27 355 9.0E-114 T 18-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 Gene3D G3DSA:3.40.50.1170 25 240 4.3E-87 T 18-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 109 119 - T 18-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 RU84_09920 9a1b124a8100c593fee1c62936b0ec16 355 Gene3D G3DSA:3.40.50.40 241 355 3.9E-34 T 18-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RU84_10560 9618447b75ca958c4f2a2c2161f008ae 345 Pfam PF13343 Bacterial extracellular solute-binding protein 85 322 4.8E-28 T 18-10-2018 RU84_10560 9618447b75ca958c4f2a2c2161f008ae 345 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 20 344 3.7E-144 T 18-10-2018 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative RU84_10560 9618447b75ca958c4f2a2c2161f008ae 345 PIRSF PIRSF002825 5 344 2.9E-90 T 18-10-2018 IPR026045 Ferric binding protein RU84_10560 9618447b75ca958c4f2a2c2161f008ae 345 Gene3D G3DSA:3.40.190.10 141 258 6.1E-84 T 18-10-2018 RU84_10560 9618447b75ca958c4f2a2c2161f008ae 345 Gene3D G3DSA:3.40.190.10 40 304 6.1E-84 T 18-10-2018 RU84_10560 9618447b75ca958c4f2a2c2161f008ae 345 SUPERFAMILY SSF53850 33 341 9.2E-65 T 18-10-2018 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Gene3D G3DSA:3.30.365.10 151 407 5.3E-291 T 18-10-2018 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 158 708 1.4E-198 T 18-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Gene3D G3DSA:3.30.365.10 459 606 5.3E-291 T 18-10-2018 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Gene3D G3DSA:3.30.365.10 138 774 5.3E-291 T 18-10-2018 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 30 135 1.1E-24 T 18-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 SUPERFAMILY SSF54665 11 135 1.83E-36 T 18-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 SUPERFAMILY SSF56003 138 775 1.57E-201 T 18-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 18 775 0.0 T 18-10-2018 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Gene3D G3DSA:3.90.1170.50 17 137 5.3E-291 T 18-10-2018 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 Gene3D G3DSA:3.30.365.10 185 279 5.3E-291 T 18-10-2018 RU84_05440 711a518cf7cfe3db11c9d41a62f5db58 791 SMART SM01008 30 137 8.0E-38 T 18-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Pfam PF01330 RuvA N terminal domain 1 61 3.7E-20 T 18-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 SUPERFAMILY SSF50249 1 62 1.09E-16 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Gene3D G3DSA:1.10.150.20 66 138 3.5E-26 T 18-10-2018 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 SUPERFAMILY SSF46929 152 198 3.66E-9 T 18-10-2018 IPR036267 RuvA, C-terminal domain superfamily RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Gene3D G3DSA:1.10.8.10 151 198 6.2E-14 T 18-10-2018 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 SUPERFAMILY SSF47781 65 135 6.39E-22 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Gene3D G3DSA:2.40.50.140 1 65 1.2E-23 T 18-10-2018 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 198 29.911 T 18-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Pfam PF14520 Helix-hairpin-helix domain 71 129 1.1E-18 T 18-10-2018 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 SMART SM00278 72 91 0.52 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 SMART SM00278 107 126 0.13 T 18-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 Pfam PF07499 RuvA, C-terminal domain 155 198 1.8E-13 T 18-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 RU84_04585 a9b46ba6b7e7f19740371219a046bfe0 199 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 198 2.5E-56 T 18-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 6.3E-15 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 6.5E-19 T 18-10-2018 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 Gene3D G3DSA:3.30.70.920 53 147 4.3E-20 T 18-10-2018 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 SUPERFAMILY SSF46785 3 62 1.56E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 SMART SM00344 3 112 9.1E-39 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 1.5E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 1.5E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 1.5E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 Gene3D G3DSA:1.10.10.10 4 52 1.8E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 SUPERFAMILY SSF54909 65 147 1.88E-15 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_07555 a4d21bba2cb8f1fc246ee1ae7dd3b0cb 149 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 18-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 536 1.3E-242 T 18-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 Pfam PF00117 Glutamine amidotransferase class-I 302 536 1.4E-59 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 SUPERFAMILY SSF52540 1 267 2.32E-114 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 Hamap MF_01227 CTP synthase [pyrG]. 2 541 49.348 T 18-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 Gene3D G3DSA:3.40.50.300 1 285 1.2E-122 T 18-10-2018 RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 Pfam PF06418 CTP synthase N-terminus 4 264 1.5E-118 T 18-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 SUPERFAMILY SSF52317 290 542 2.08E-84 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_07880 7080aa1bd6d5688fb3a3c032d63948c1 545 Gene3D G3DSA:3.40.50.880 287 545 3.3E-102 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 SUPERFAMILY SSF48498 81 166 5.04E-7 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 154 199 1.5E-5 T 18-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 SUPERFAMILY SSF46689 7 82 2.92E-17 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 Gene3D G3DSA:1.10.357.10 55 200 3.6E-32 T 18-10-2018 RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 60 8.7E-14 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.2E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.2E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08385 9ced7d07205dbbef3822eebeb3314cbc 206 Gene3D G3DSA:1.10.10.60 4 54 2.8E-16 T 18-10-2018 RU84_15135 220f67591973bb220904eb68c37c3581 83 Gene3D G3DSA:3.30.300.90 1 82 4.0E-25 T 18-10-2018 RU84_15135 220f67591973bb220904eb68c37c3581 83 Pfam PF01722 BolA-like protein 22 74 1.8E-12 T 18-10-2018 IPR002634 BolA protein RU84_15135 220f67591973bb220904eb68c37c3581 83 SUPERFAMILY SSF82657 2 78 4.58E-23 T 18-10-2018 IPR036065 BolA-like superfamily RU84_15135 220f67591973bb220904eb68c37c3581 83 PIRSF PIRSF003113 1 82 8.4E-21 T 18-10-2018 IPR002634 BolA protein RU84_03615 f2e9498b211e6ccc8bbe6508c1b189b6 232 Pfam PF02525 Flavodoxin-like fold 1 205 8.0E-51 T 18-10-2018 IPR003680 Flavodoxin-like fold RU84_03615 f2e9498b211e6ccc8bbe6508c1b189b6 232 SUPERFAMILY SSF52218 1 229 2.19E-64 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_03615 f2e9498b211e6ccc8bbe6508c1b189b6 232 Gene3D G3DSA:3.40.50.360 1 231 2.0E-75 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_08040 da0e6cefc00f133a1e9b7a354b619deb 369 Pfam PF01425 Amidase 229 358 1.2E-18 T 18-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_08040 da0e6cefc00f133a1e9b7a354b619deb 369 Pfam PF01425 Amidase 17 173 4.7E-61 T 18-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_08040 da0e6cefc00f133a1e9b7a354b619deb 369 Gene3D G3DSA:3.90.1300.10 13 368 1.1E-99 T 18-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_08040 da0e6cefc00f133a1e9b7a354b619deb 369 SUPERFAMILY SSF75304 17 367 3.4E-95 T 18-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_08040 da0e6cefc00f133a1e9b7a354b619deb 369 ProSitePatterns PS00571 Amidases signature. 94 125 - T 18-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RU84_17575 dd302c792db3538a42a00026d6728f9e 291 Pfam PF00119 ATP synthase A chain 55 285 1.2E-56 T 18-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17575 dd302c792db3538a42a00026d6728f9e 291 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 291 15.994 T 18-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17575 dd302c792db3538a42a00026d6728f9e 291 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 45 286 1.1E-41 T 18-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17575 dd302c792db3538a42a00026d6728f9e 291 Gene3D G3DSA:1.20.120.220 102 291 1.2E-59 T 18-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17575 dd302c792db3538a42a00026d6728f9e 291 ProSitePatterns PS00449 ATP synthase a subunit signature. 227 236 - T 18-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17575 dd302c792db3538a42a00026d6728f9e 291 SUPERFAMILY SSF81336 103 285 6.15E-42 T 18-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 Pfam PF00842 Alanine racemase, C-terminal domain 238 362 8.8E-38 T 18-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 Hamap MF_01201 Alanine racemase. 2 366 31.27 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 Gene3D G3DSA:3.20.20.10 11 220 6.3E-108 T 18-10-2018 IPR029066 PLP-binding barrel RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 Pfam PF01168 Alanine racemase, N-terminal domain 9 222 7.3E-62 T 18-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 Gene3D G3DSA:2.40.37.10 9 361 6.3E-108 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 SUPERFAMILY SSF50621 231 362 1.19E-41 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 270 285 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 121 133 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 291 308 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 155 166 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 27 43 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 195 222 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 253 268 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 61 79 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 PRINTS PR00992 Alanine racemase signature 348 361 3.2E-57 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 SUPERFAMILY SSF51419 9 238 9.0E-59 T 18-10-2018 IPR029066 PLP-binding barrel RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 18-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 TIGRFAM TIGR00492 alr: alanine racemase 3 362 4.4E-106 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_17825 e73ce6da756ef162d24eb1c341c2acfa 367 SMART SM01005 237 366 3.3E-58 T 18-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06600 a4b4dbfc20a7d5c8704664964c3a0db0 415 SUPERFAMILY SSF53448 49 317 3.28E-60 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_06600 a4b4dbfc20a7d5c8704664964c3a0db0 415 Pfam PF13641 Glycosyltransferase like family 2 49 269 3.5E-38 T 18-10-2018 RU84_06600 a4b4dbfc20a7d5c8704664964c3a0db0 415 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 8 409 8.2E-176 T 18-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 RU84_06600 a4b4dbfc20a7d5c8704664964c3a0db0 415 Gene3D G3DSA:3.90.550.10 29 264 4.3E-44 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_11215 a9fdc3e8454fa20092d0cd54c5f3093d 420 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 8 413 1.6E-69 T 18-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 RU84_11215 a9fdc3e8454fa20092d0cd54c5f3093d 420 Pfam PF02601 Exonuclease VII, large subunit 137 362 2.1E-45 T 18-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 RU84_11215 a9fdc3e8454fa20092d0cd54c5f3093d 420 Pfam PF13742 OB-fold nucleic acid binding domain 6 113 8.1E-14 T 18-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 Pfam PF09383 NIL domain 277 327 1.2E-8 T 18-10-2018 IPR018449 NIL domain RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 SUPERFAMILY SSF52540 15 252 1.15E-81 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 SUPERFAMILY SSF55021 268 351 5.72E-11 T 18-10-2018 RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 Gene3D G3DSA:3.30.70.260 261 356 2.0E-9 T 18-10-2018 RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 Gene3D G3DSA:3.40.50.300 9 257 7.7E-75 T 18-10-2018 RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 SMART SM00382 43 231 2.6E-13 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 Pfam PF00005 ABC transporter 34 182 5.5E-36 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09820 3879d38d7bc7ffe1f9d61a5832ea76d4 356 SMART SM00930 274 349 1.9E-5 T 18-10-2018 IPR018449 NIL domain RU84_05500 3f40c999e4b73e69a7c6a73c7aa6af70 292 Gene3D G3DSA:1.20.120.1780 174 292 3.2E-12 T 18-10-2018 RU84_05500 3f40c999e4b73e69a7c6a73c7aa6af70 292 Pfam PF01040 UbiA prenyltransferase family 31 275 8.5E-56 T 18-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RU84_05500 3f40c999e4b73e69a7c6a73c7aa6af70 292 Gene3D G3DSA:1.10.357.140 26 173 1.8E-38 T 18-10-2018 RU84_05500 3f40c999e4b73e69a7c6a73c7aa6af70 292 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 13 291 5.9E-95 T 18-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 RU84_05500 3f40c999e4b73e69a7c6a73c7aa6af70 292 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 8 292 28.066 T 18-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 RU84_17315 f91536a2fab58f506ead6a63068ece00 270 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 31 270 3.1E-34 T 18-10-2018 IPR010239 Conserved hypothetical protein CHP02001 RU84_17315 f91536a2fab58f506ead6a63068ece00 270 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 5 270 4.2E-38 T 18-10-2018 IPR010239 Conserved hypothetical protein CHP02001 RU84_06270 070a2b6f0c5e7ad919fec3495ed29049 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 2.5E-12 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06270 070a2b6f0c5e7ad919fec3495ed29049 194 SUPERFAMILY SSF46689 12 69 2.92E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06270 070a2b6f0c5e7ad919fec3495ed29049 194 Gene3D G3DSA:1.10.357.10 6 183 1.7E-20 T 18-10-2018 RU84_06270 070a2b6f0c5e7ad919fec3495ed29049 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 6.6E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06270 070a2b6f0c5e7ad919fec3495ed29049 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 6.6E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 4.7E-36 T 18-10-2018 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 242 268 4.7E-36 T 18-10-2018 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 4.7E-36 T 18-10-2018 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 4.7E-36 T 18-10-2018 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 4.7E-36 T 18-10-2018 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 4.7E-36 T 18-10-2018 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 798 924 9.8E-34 T 18-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 Pfam PF13244 Domain of unknown function (DUF4040) 624 685 5.1E-18 T 18-10-2018 IPR025383 Domain of unknown function DUF4040 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 105 1.5E-7 T 18-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 Pfam PF00361 Proton-conducting membrane transporter 130 416 3.4E-63 T 18-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 81 101 2.6E-5 T 18-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RU84_16685 eded15f188e4482c9e23ee3118356ecd 949 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 260 282 2.6E-5 T 18-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 SUPERFAMILY SSF53720 27 428 1.61E-88 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 2.6E-78 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 18-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 2 428 40.562 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 427 1.1E-160 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 Gene3D G3DSA:3.40.50.1980 234 350 1.7E-124 T 18-10-2018 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 Gene3D G3DSA:3.40.50.1980 31 232 1.7E-124 T 18-10-2018 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 PIRSF PIRSF000099 1 429 9.7E-157 T 18-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_15120 8fe60c4498d1b2a40a9d3df6679a8630 429 Pfam PF00815 Histidinol dehydrogenase 25 427 8.4E-168 T 18-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 Gene3D G3DSA:1.10.10.10 130 238 7.8E-41 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 SMART SM00862 155 231 2.8E-25 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 SUPERFAMILY SSF52172 8 130 3.42E-38 T 18-10-2018 IPR011006 CheY-like superfamily RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 SUPERFAMILY SSF46894 135 232 5.1E-28 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 Gene3D G3DSA:3.40.50.2300 1 129 3.9E-37 T 18-10-2018 RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 Pfam PF00072 Response regulator receiver domain 10 119 1.1E-24 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 1.3E-23 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_14805 4d50e210b83355558b1dab0b1e8398ab 238 SMART SM00448 8 118 6.1E-40 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 Pfam PF00717 Peptidase S24-like 139 204 5.9E-9 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 Gene3D G3DSA:2.10.109.10 100 222 3.6E-14 T 18-10-2018 RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 SUPERFAMILY SSF47413 2 64 9.57E-11 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 Gene3D G3DSA:1.10.260.40 2 70 1.1E-17 T 18-10-2018 RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 SMART SM00530 6 60 7.8E-10 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 Pfam PF12844 Helix-turn-helix domain 6 64 2.3E-8 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_11200 949ec8a2de7583cf8c7110d81209de61 223 SUPERFAMILY SSF51306 99 220 4.53E-18 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82866 297 487 1.83E-37 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:1.20.1640.10 527 1031 5.8E-253 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82714 187 266 4.32E-13 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:3.30.2090.10 181 270 5.8E-253 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82693 42 138 8.37E-19 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:3.30.70.1430 581 679 5.8E-253 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:3.30.2090.10 731 819 5.8E-253 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82693 139 325 3.45E-16 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82693 581 673 2.09E-5 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82866 815 1038 6.28E-47 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:3.30.70.1320 138 328 5.8E-253 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.2E-22 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 1.2E-22 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.2E-22 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.2E-22 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.2E-22 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:3.30.70.1440 680 879 5.8E-253 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 SUPERFAMILY SSF82714 734 818 1.31E-14 T 18-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Pfam PF00873 AcrB/AcrD/AcrF family 7 1032 1.3E-168 T 18-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:1.20.1640.10 15 513 5.8E-253 T 18-10-2018 RU84_00175 c4d0abb9eceac0c1df07e57dd08280a3 1041 Gene3D G3DSA:3.30.70.1430 42 827 5.8E-253 T 18-10-2018 RU84_18205 ad8aaf1d8044e7f43403ce42f2386c3c 160 Gene3D G3DSA:3.10.50.40 11 160 3.0E-38 T 18-10-2018 RU84_18205 ad8aaf1d8044e7f43403ce42f2386c3c 160 SUPERFAMILY SSF54534 13 149 4.91E-36 T 18-10-2018 RU84_18205 ad8aaf1d8044e7f43403ce42f2386c3c 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 12 146 3.4E-18 T 18-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 SUPERFAMILY SSF52091 327 398 2.55E-7 T 18-10-2018 IPR036513 STAS domain superfamily RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 Gene3D G3DSA:3.40.710.10 1 306 1.9E-119 T 18-10-2018 RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 TIGRFAM TIGR03814 Gln_ase: glutaminase A 17 303 2.0E-101 T 18-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 SUPERFAMILY SSF56601 4 304 8.03E-109 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 Hamap MF_00313 Glutaminase [glsA]. 5 304 40.218 T 18-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 Gene3D G3DSA:3.30.750.24 310 404 4.9E-22 T 18-10-2018 IPR036513 STAS domain superfamily RU84_12940 9cf01fb827dca697d3f076f3292dc593 440 Pfam PF04960 Glutaminase 22 303 2.5E-113 T 18-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 RU84_05395 bb212ffa7109c1dac9e63061cb9ae52a 389 SUPERFAMILY SSF56322 46 384 4.58E-89 T 18-10-2018 IPR005801 ADC synthase GO:0009058 RU84_05395 bb212ffa7109c1dac9e63061cb9ae52a 389 Gene3D G3DSA:3.60.120.10 4 385 1.9E-111 T 18-10-2018 IPR005801 ADC synthase GO:0009058 RU84_05395 bb212ffa7109c1dac9e63061cb9ae52a 389 Pfam PF00425 chorismate binding enzyme 120 375 3.7E-71 T 18-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RU84_05395 bb212ffa7109c1dac9e63061cb9ae52a 389 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 96 383 9.4E-89 T 18-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 RU84_15985 a35909285191372b4042351a67d0ef1b 227 SMART SM00702 2 177 5.0E-21 T 18-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 RU84_15985 a35909285191372b4042351a67d0ef1b 227 Gene3D G3DSA:4.10.860.20 180 227 2.2E-21 T 18-10-2018 RU84_15985 a35909285191372b4042351a67d0ef1b 227 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 3.2E-12 T 18-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RU84_15985 a35909285191372b4042351a67d0ef1b 227 SUPERFAMILY SSF51197 4 179 2.61E-6 T 18-10-2018 RU84_15985 a35909285191372b4042351a67d0ef1b 227 Gene3D G3DSA:2.60.120.620 1 178 6.7E-44 T 18-10-2018 RU84_15985 a35909285191372b4042351a67d0ef1b 227 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 227 45.395 T 18-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 Gene3D G3DSA:2.30.40.10 7 396 2.8E-162 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 Pfam PF01979 Amidohydrolase family 57 397 2.9E-28 T 18-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 Gene3D G3DSA:3.20.20.140 61 359 2.8E-162 T 18-10-2018 RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 SUPERFAMILY SSF51556 60 360 4.09E-88 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 399 43.97 T 18-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 TIGRFAM TIGR01224 hutI: imidazolonepropionase 21 397 1.6E-152 T 18-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00400 878df5070e5373f2c3c73e226b491fe8 401 SUPERFAMILY SSF51338 1 398 1.89E-31 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_15470 ea7197a89b818f1356d560c430b76669 394 SUPERFAMILY SSF103473 8 384 9.16E-43 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_15470 ea7197a89b818f1356d560c430b76669 394 Gene3D G3DSA:1.20.1250.20 7 384 1.8E-34 T 18-10-2018 RU84_15470 ea7197a89b818f1356d560c430b76669 394 Pfam PF07690 Major Facilitator Superfamily 32 351 2.5E-23 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 Gene3D G3DSA:3.30.950.10 112 231 1.0E-39 T 18-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 4 225 36.973 T 18-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 5 273 3.5E-84 T 18-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 PIRSF PIRSF005917 1 278 1.0E-100 T 18-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 Gene3D G3DSA:3.40.1010.10 1 111 2.1E-44 T 18-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 82 93 - T 18-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 SUPERFAMILY SSF53790 4 223 6.67E-81 T 18-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 RU84_12170 0f6b275fad3b508fe709f464fcedd0ee 278 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 204 4.9E-31 T 18-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 Pfam PF01687 Riboflavin kinase 180 323 1.1E-26 T 18-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 Gene3D G3DSA:3.40.50.620 6 181 9.9E-59 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 Pfam PF06574 FAD synthetase 16 163 2.3E-49 T 18-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 SUPERFAMILY SSF52374 18 172 7.88E-32 T 18-10-2018 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 324 7.0E-73 T 18-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 PIRSF PIRSF004491 2 333 7.2E-108 T 18-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 SMART SM00904 179 326 1.3E-42 T 18-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 SUPERFAMILY SSF82114 171 328 3.71E-33 T 18-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RU84_18190 e77bbcb8498e3a0cff50329973af9f06 333 Gene3D G3DSA:2.40.30.30 182 332 3.9E-26 T 18-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 115 179 8.7E-22 T 18-10-2018 IPR017703 YgfZ/GcvT conserved site RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 Pfam PF01571 Aminomethyltransferase folate-binding domain 6 83 1.2E-6 T 18-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 Gene3D G3DSA:2.40.30.160 124 228 9.3E-20 T 18-10-2018 RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 SUPERFAMILY SSF103025 8 167 4.55E-34 T 18-10-2018 RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 Gene3D G3DSA:3.30.70.1400 9 92 1.6E-20 T 18-10-2018 RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 PIRSF PIRSF006487 3 157 1.5E-6 T 18-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RU84_03330 b319a7df5f260ae1a9d62e3a1f1f3f2a 240 PIRSF PIRSF006487 123 233 46.0 T 18-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Hamap MF_00347 Polyphosphate kinase [ppk]. 16 682 27.798 T 18-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 SUPERFAMILY SSF143724 122 323 7.06E-65 T 18-10-2018 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 SUPERFAMILY SSF56024 510 690 1.61E-71 T 18-10-2018 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Pfam PF13089 Polyphosphate kinase N-terminal domain 19 124 2.3E-34 T 18-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 SUPERFAMILY SSF140356 16 120 2.88E-36 T 18-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Gene3D G3DSA:3.30.870.10 326 509 8.3E-71 T 18-10-2018 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Pfam PF13090 Polyphosphate kinase C-terminal domain 340 688 6.3E-154 T 18-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Pfam PF02503 Polyphosphate kinase middle domain 134 331 7.1E-62 T 18-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Gene3D G3DSA:3.30.870.10 510 692 8.7E-68 T 18-10-2018 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 PIRSF PIRSF015589 2 692 1.1E-279 T 18-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 Gene3D G3DSA:3.30.1840.10 12 323 1.2E-103 T 18-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 18 689 2.6E-288 T 18-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 RU84_12800 68b0b8102d481ff6cd11bb85c36d4fbe 692 SUPERFAMILY SSF56024 326 502 1.06E-56 T 18-10-2018 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 Gene3D G3DSA:2.40.37.10 8 350 3.4E-138 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 Gene3D G3DSA:3.20.20.10 10 217 3.4E-138 T 18-10-2018 IPR029066 PLP-binding barrel RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 192 219 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 60 78 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 26 42 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 266 281 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 155 166 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 287 304 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 338 351 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 123 135 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 PRINTS PR00992 Alanine racemase signature 249 264 5.9E-61 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 SMART SM01005 233 356 9.9E-60 T 18-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 Hamap MF_01201 Alanine racemase. 1 356 31.29 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 SUPERFAMILY SSF51419 8 234 7.2E-58 T 18-10-2018 IPR029066 PLP-binding barrel RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 SUPERFAMILY SSF50621 226 354 2.93E-45 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 TIGRFAM TIGR00492 alr: alanine racemase 2 351 9.6E-100 T 18-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 1.9E-56 T 18-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_06525 9b599ee740510b68ebf1c69b4aa3ca20 356 Pfam PF00842 Alanine racemase, C-terminal domain 233 353 4.5E-40 T 18-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 PRINTS PR01374 Gram-negative bacterial tonB protein signature 155 176 5.5E-6 T 18-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 PRINTS PR01374 Gram-negative bacterial tonB protein signature 176 194 5.5E-6 T 18-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 PRINTS PR01374 Gram-negative bacterial tonB protein signature 69 79 5.5E-6 T 18-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 160 235 1.1E-20 T 18-10-2018 IPR037682 TonB, C-terminal GO:0055085 RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 Gene3D G3DSA:3.30.1150.10 102 238 7.9E-21 T 18-10-2018 RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 161 236 1.1E-18 T 18-10-2018 IPR006260 TonB/TolA, C-terminal RU84_09275 94f4510d18f23eaddb76fb58bc932835 238 SUPERFAMILY SSF74653 160 235 1.03E-20 T 18-10-2018 RU84_00880 1bd72cb000a24507b8ba96a5aafb7df6 370 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 8 356 2.5E-184 T 18-10-2018 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG KEGG: 00920+1.14.14.35|MetaCyc: PWY-6059 RU84_00880 1bd72cb000a24507b8ba96a5aafb7df6 370 Gene3D G3DSA:3.20.20.30 4 359 2.8E-106 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_00880 1bd72cb000a24507b8ba96a5aafb7df6 370 Pfam PF00296 Luciferase-like monooxygenase 9 328 8.9E-71 T 18-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RU84_00880 1bd72cb000a24507b8ba96a5aafb7df6 370 SUPERFAMILY SSF51679 5 357 6.67E-88 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 PIRSF PIRSF000345 1 357 2.1E-95 T 18-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 Pfam PF00487 Fatty acid desaturase 42 270 9.1E-21 T 18-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 PRINTS PR00075 Fatty acid desaturase family 1 signature 39 61 9.3E-36 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 PRINTS PR00075 Fatty acid desaturase family 1 signature 100 129 9.3E-36 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 PRINTS PR00075 Fatty acid desaturase family 1 signature 232 246 9.3E-36 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 PRINTS PR00075 Fatty acid desaturase family 1 signature 62 82 9.3E-36 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_03055 dfc157feafcbc222f44d406c3c0acd38 390 PRINTS PR00075 Fatty acid desaturase family 1 signature 189 210 9.3E-36 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_18510 cbac23e831a829b5222355559a2018e8 785 Gene3D G3DSA:3.20.20.140 5 287 2.4E-41 T 18-10-2018 RU84_18510 cbac23e831a829b5222355559a2018e8 785 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 740 3.3E-175 T 18-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_18510 cbac23e831a829b5222355559a2018e8 785 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 307 739 1.2E-138 T 18-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_18510 cbac23e831a829b5222355559a2018e8 785 SMART SM00481 4 71 5.3E-10 T 18-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RU84_18510 cbac23e831a829b5222355559a2018e8 785 Pfam PF02811 PHP domain 8 172 5.0E-18 T 18-10-2018 IPR004013 PHP domain GO:0003824 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 SUPERFAMILY SSF51905 10 300 6.04E-32 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 358 368 - T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 Gene3D G3DSA:3.50.50.60 13 372 2.5E-134 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 41 53 7.8E-28 T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 319 325 7.8E-28 T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 353 365 7.8E-28 T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 12 24 7.8E-28 T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 25 35 7.8E-28 T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 86 98 7.8E-28 T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 Pfam PF01266 FAD dependent oxidoreductase 13 333 2.2E-45 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 Gene3D G3DSA:1.10.8.870 399 467 1.9E-20 T 18-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 17 34 - T 18-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 Gene3D G3DSA:3.30.9.10 90 326 2.5E-134 T 18-10-2018 RU84_04130 41a401cb008ed6e845dfbed18ee378f1 505 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 387 491 1.2E-14 T 18-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 RU84_02400 925d749be310c995d0bc0ee3c84bab00 537 Pfam PF01039 Carboxyl transferase domain 50 524 8.6E-118 T 18-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RU84_02400 925d749be310c995d0bc0ee3c84bab00 537 Gene3D G3DSA:3.90.226.10 272 537 6.3E-90 T 18-10-2018 RU84_02400 925d749be310c995d0bc0ee3c84bab00 537 Gene3D G3DSA:3.90.226.10 1 271 4.9E-68 T 18-10-2018 RU84_02400 925d749be310c995d0bc0ee3c84bab00 537 SUPERFAMILY SSF52096 278 534 2.32E-72 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_02400 925d749be310c995d0bc0ee3c84bab00 537 SUPERFAMILY SSF52096 42 275 1.33E-55 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_12830 c052ce1a1c954bc0271c02354d3b1ffc 204 Gene3D G3DSA:3.40.1050.10 1 204 3.7E-61 T 18-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RU84_12830 c052ce1a1c954bc0271c02354d3b1ffc 204 SUPERFAMILY SSF53056 3 203 1.96E-52 T 18-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RU84_12830 c052ce1a1c954bc0271c02354d3b1ffc 204 Pfam PF00484 Carbonic anhydrase 45 199 2.5E-37 T 18-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RU84_12830 c052ce1a1c954bc0271c02354d3b1ffc 204 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 50 57 - T 18-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RU84_12830 c052ce1a1c954bc0271c02354d3b1ffc 204 SMART SM00947 38 203 1.9E-51 T 18-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RU84_07795 db82419941051960c55d35b8ac9ab13b 223 SUPERFAMILY SSF100950 7 149 7.67E-44 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_07795 db82419941051960c55d35b8ac9ab13b 223 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 7 220 32.895 T 18-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 RU84_07795 db82419941051960c55d35b8ac9ab13b 223 Gene3D G3DSA:3.40.50.1360 11 212 2.1E-72 T 18-10-2018 RU84_07795 db82419941051960c55d35b8ac9ab13b 223 SUPERFAMILY SSF75445 131 201 3.53E-23 T 18-10-2018 RU84_07795 db82419941051960c55d35b8ac9ab13b 223 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 10 217 5.0E-64 T 18-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 RU84_07795 db82419941051960c55d35b8ac9ab13b 223 Gene3D G3DSA:3.30.70.260 127 198 2.1E-72 T 18-10-2018 RU84_07795 db82419941051960c55d35b8ac9ab13b 223 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 216 6.7E-59 T 18-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 Gene3D G3DSA:3.30.1340.10 1 88 1.3E-25 T 18-10-2018 IPR035895 HPr-like superfamily RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.6E-11 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.6E-11 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.6E-11 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 1.6E-23 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 SUPERFAMILY SSF55594 1 87 3.93E-24 T 18-10-2018 IPR035895 HPr-like superfamily RU84_15350 cd6cb6b64e1b3031016ace39538d86ba 89 Pfam PF00381 PTS HPr component phosphorylation site 4 82 5.4E-23 T 18-10-2018 IPR000032 Phosphocarrier protein HPr-like RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SUPERFAMILY SSF48452 92 214 4.43E-8 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Gene3D G3DSA:1.25.40.10 31 173 5.7E-6 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Pfam PF13432 Tetratricopeptide repeat 254 307 0.0082 T 18-10-2018 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SMART SM00028 350 383 330.0 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SMART SM00028 116 149 11.0 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SMART SM00028 182 215 6.6 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SMART SM00028 488 521 7.9 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SMART SM00028 216 249 230.0 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SMART SM00028 385 418 2.5 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Gene3D G3DSA:1.25.40.10 346 430 6.2E-6 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Pfam PF13181 Tetratricopeptide repeat 456 486 0.2 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Gene3D G3DSA:1.25.40.10 174 345 5.3E-16 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SUPERFAMILY SSF48452 181 343 3.22E-15 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Gene3D G3DSA:1.25.40.10 432 570 9.6E-14 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 Pfam PF14559 Tetratricopeptide repeat 499 560 3.9E-6 T 18-10-2018 RU84_14355 78a67322da0f9d9539f7ee7d4b1bc79d 572 SUPERFAMILY SSF48452 391 511 3.13E-14 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_04580 830a246478dda2190b837c16e3f69b11 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 175.477 T 18-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RU84_04580 830a246478dda2190b837c16e3f69b11 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 328 3.0E-27 T 18-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RU84_04580 830a246478dda2190b837c16e3f69b11 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 9 235 8.0E-116 T 18-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 RU84_04580 830a246478dda2190b837c16e3f69b11 334 SUPERFAMILY SSF46785 257 330 2.38E-22 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_04580 830a246478dda2190b837c16e3f69b11 334 Gene3D G3DSA:3.40.50.300 18 181 3.5E-37 T 18-10-2018 RU84_04580 830a246478dda2190b837c16e3f69b11 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 9.9E-30 T 18-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 RU84_04580 830a246478dda2190b837c16e3f69b11 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 3.6E-143 T 18-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 RU84_04580 830a246478dda2190b837c16e3f69b11 334 Gene3D G3DSA:1.10.8.60 182 256 6.5E-32 T 18-10-2018 RU84_04580 830a246478dda2190b837c16e3f69b11 334 SUPERFAMILY SSF52540 20 252 1.96E-52 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04580 830a246478dda2190b837c16e3f69b11 334 SMART SM00382 51 178 9.9E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_04580 830a246478dda2190b837c16e3f69b11 334 Gene3D G3DSA:1.10.10.10 257 333 4.9E-29 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_04945 a4b132fdc3c0c2dc0dee1420991cf852 439 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 241 3.7E-63 T 18-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RU84_04945 a4b132fdc3c0c2dc0dee1420991cf852 439 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 7.4E-16 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_04945 a4b132fdc3c0c2dc0dee1420991cf852 439 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 7.4E-16 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_04945 a4b132fdc3c0c2dc0dee1420991cf852 439 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 7.4E-16 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_04945 a4b132fdc3c0c2dc0dee1420991cf852 439 SUPERFAMILY SSF56601 3 278 1.23E-68 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_04945 a4b132fdc3c0c2dc0dee1420991cf852 439 Gene3D G3DSA:3.40.710.10 15 279 1.6E-80 T 18-10-2018 RU84_13945 109879faa001013118638d3b3b9ba7c0 324 Gene3D G3DSA:3.40.50.1820 5 321 6.2E-85 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_13945 109879faa001013118638d3b3b9ba7c0 324 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 159 171 - T 18-10-2018 IPR033140 Lipase, GDXG, putative serine active site RU84_13945 109879faa001013118638d3b3b9ba7c0 324 SUPERFAMILY SSF53474 54 318 5.32E-70 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_13945 109879faa001013118638d3b3b9ba7c0 324 Pfam PF07859 alpha/beta hydrolase fold 87 291 3.3E-66 T 18-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RU84_13780 7210389c57fce45c6f3d8576f0fda0d9 150 SUPERFAMILY SSF51283 2 149 3.93E-54 T 18-10-2018 IPR036157 dUTPase-like superfamily RU84_13780 7210389c57fce45c6f3d8576f0fda0d9 150 Gene3D G3DSA:2.70.40.10 1 150 1.7E-54 T 18-10-2018 IPR036157 dUTPase-like superfamily RU84_13780 7210389c57fce45c6f3d8576f0fda0d9 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 5 149 33.565 T 18-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 RU84_13780 7210389c57fce45c6f3d8576f0fda0d9 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 9 149 3.5E-49 T 18-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 RU84_13780 7210389c57fce45c6f3d8576f0fda0d9 150 Pfam PF00692 dUTPase 15 148 5.8E-39 T 18-10-2018 IPR029054 dUTPase-like RU84_06430 535b1798ad72f85fab7393032afa2598 188 SUPERFAMILY SSF48498 82 184 2.67E-10 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_06430 535b1798ad72f85fab7393032afa2598 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 38 65 6.6E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06430 535b1798ad72f85fab7393032afa2598 188 SUPERFAMILY SSF46689 13 70 3.49E-7 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06430 535b1798ad72f85fab7393032afa2598 188 Gene3D G3DSA:1.10.357.10 61 186 8.4E-9 T 18-10-2018 RU84_06430 535b1798ad72f85fab7393032afa2598 188 Gene3D G3DSA:1.10.10.60 11 58 1.5E-11 T 18-10-2018 RU84_06430 535b1798ad72f85fab7393032afa2598 188 Pfam PF16859 Bacterial transcriptional repressor C-terminal 79 180 2.1E-8 T 18-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RU84_17720 f46e36864bf3b462cd044ef55eaa34a7 621 SUPERFAMILY SSF53474 379 610 1.49E-28 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17720 f46e36864bf3b462cd044ef55eaa34a7 621 SUPERFAMILY SSF51735 12 289 2.86E-38 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17720 f46e36864bf3b462cd044ef55eaa34a7 621 Pfam PF12697 Alpha/beta hydrolase family 385 601 1.2E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_17720 f46e36864bf3b462cd044ef55eaa34a7 621 Pfam PF01370 NAD dependent epimerase/dehydratase family 17 218 1.1E-18 T 18-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RU84_17720 f46e36864bf3b462cd044ef55eaa34a7 621 Gene3D G3DSA:3.40.50.720 13 307 2.6E-36 T 18-10-2018 RU84_17720 f46e36864bf3b462cd044ef55eaa34a7 621 Gene3D G3DSA:3.40.50.1820 354 619 4.8E-29 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 SUPERFAMILY SSF143800 1 80 6.28E-22 T 18-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 7.2E-17 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 69 - T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 24.58 T 18-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 Pfam PF01197 Ribosomal protein L31 1 78 6.0E-24 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.7E-14 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.7E-14 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 1.7E-14 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16410 baa761bfd27ff54ffd5f70b4029ce27f 84 Gene3D G3DSA:2.30.170.50 1 83 3.4E-22 T 18-10-2018 RU84_16390 4d3d28ea3e3923ca4775fdbdd55a5707 448 PIRSF PIRSF006603 8 447 8.6E-61 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_16390 4d3d28ea3e3923ca4775fdbdd55a5707 448 Pfam PF01554 MatE 20 179 1.5E-28 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_16390 4d3d28ea3e3923ca4775fdbdd55a5707 448 Pfam PF01554 MatE 246 405 5.5E-27 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_16390 4d3d28ea3e3923ca4775fdbdd55a5707 448 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 420 5.3E-87 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_17395 a32769a0a376c4dc1c5e9727aba51099 166 Pfam PF10881 Protein of unknown function (DUF2726) 34 140 2.7E-11 T 18-10-2018 IPR024402 Domain of unknown function DUF2726 RU84_04680 e19f692938b69fb278c402e83c65a06a 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 272 2.8E-30 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_04680 e19f692938b69fb278c402e83c65a06a 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 7 270 2.2E-127 T 18-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 RU84_04680 e19f692938b69fb278c402e83c65a06a 277 Gene3D G3DSA:1.10.3720.10 13 272 2.8E-70 T 18-10-2018 IPR035906 MetI-like superfamily RU84_04680 e19f692938b69fb278c402e83c65a06a 277 SUPERFAMILY SSF161098 14 264 4.21E-57 T 18-10-2018 IPR035906 MetI-like superfamily RU84_04680 e19f692938b69fb278c402e83c65a06a 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 266 7.0E-98 T 18-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 SUPERFAMILY SSF50104 2 63 4.31E-21 T 18-10-2018 IPR008991 Translation protein SH3-like domain superfamily RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 SUPERFAMILY SSF50249 132 189 2.74E-17 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 PIRSF PIRSF005901 2 189 1.7E-64 T 18-10-2018 IPR020599 Translation elongation factor P/YeiP RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Gene3D G3DSA:2.40.50.140 66 131 2.9E-30 T 18-10-2018 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 SUPERFAMILY SSF50249 69 130 9.42E-16 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 125 9.3E-23 T 18-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Gene3D G3DSA:2.30.30.30 1 65 2.6E-29 T 18-10-2018 IPR014722 Ribosomal protein L2, domain 2 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Pfam PF09285 Elongation factor P, C-terminal 133 188 4.8E-25 T 18-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Hamap MF_00141 Elongation factor P [efp]. 3 189 49.141 T 18-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 TIGRFAM TIGR00038 efp: translation elongation factor P 4 189 1.3E-77 T 18-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 5.8E-26 T 18-10-2018 IPR013185 Translation elongation factor, KOW-like RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 SMART SM01185 69 125 3.7E-27 T 18-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 SMART SM00841 133 188 1.9E-31 T 18-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 RU84_05245 cf6dba490be882d016bb9b6ff5ef8a17 189 Gene3D G3DSA:2.40.50.140 132 189 1.4E-27 T 18-10-2018 RU84_06260 bac1aed58c802655ef550e6ae175086e 495 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 427 4.8E-139 T 18-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 RU84_06260 bac1aed58c802655ef550e6ae175086e 495 Gene3D G3DSA:1.20.1250.20 24 444 2.0E-73 T 18-10-2018 RU84_06260 bac1aed58c802655ef550e6ae175086e 495 ProSitePatterns PS00216 Sugar transport proteins signature 1. 311 328 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_06260 bac1aed58c802655ef550e6ae175086e 495 ProSitePatterns PS00217 Sugar transport proteins signature 2. 137 162 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_06260 bac1aed58c802655ef550e6ae175086e 495 Pfam PF00083 Sugar (and other) transporter 29 442 1.1E-56 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_06260 bac1aed58c802655ef550e6ae175086e 495 SUPERFAMILY SSF103473 21 442 1.31E-73 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_06260 bac1aed58c802655ef550e6ae175086e 495 Pfam PF08946 Osmosensory transporter coiled coil 451 494 7.6E-15 T 18-10-2018 IPR015041 Osmosensory transporter coiled coil RU84_06260 bac1aed58c802655ef550e6ae175086e 495 SUPERFAMILY SSF103661 461 493 6.02E-11 T 18-10-2018 IPR036292 Proline/betaine transporter ProP, C-terminal RU84_14755 ff524dec65ac8d1eb18170f06b4428ce 338 Pfam PF00146 NADH dehydrogenase 24 329 5.6E-121 T 18-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14755 ff524dec65ac8d1eb18170f06b4428ce 338 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 17 336 24.207 T 18-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14755 ff524dec65ac8d1eb18170f06b4428ce 338 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 218 231 - T 18-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14755 ff524dec65ac8d1eb18170f06b4428ce 338 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 63 78 - T 18-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 29 43 - T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 Pfam PF00209 Sodium:neurotransmitter symporter family 5 119 2.0E-38 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 Pfam PF00209 Sodium:neurotransmitter symporter family 126 482 8.4E-68 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 SUPERFAMILY SSF161070 5 485 3.66E-136 T 18-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 4.6E-26 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 4.6E-26 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 4.6E-26 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 391 411 4.6E-26 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_00115 4a3f1d4ab8d0ba52c730e241886e6380 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 4.6E-26 T 18-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 Gene3D G3DSA:2.30.30.30 115 195 9.8E-31 T 18-10-2018 IPR014722 Ribosomal protein L2, domain 2 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 SUPERFAMILY SSF50249 3 124 3.32E-49 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 9.3E-34 T 18-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 Gene3D G3DSA:2.40.50.140 1 114 7.3E-49 T 18-10-2018 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 Gene3D G3DSA:4.10.950.10 196 273 2.0E-33 T 18-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 SMART SM01382 124 251 3.1E-84 T 18-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 7.3E-125 T 18-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 45.552 T 18-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 SMART SM01383 42 118 3.9E-46 T 18-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 PIRSF PIRSF002158 10 274 4.4E-101 T 18-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 249 4.4E-53 T 18-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 RU84_02025 57f2d18e33b7ed34567dc80eda5727d0 274 SUPERFAMILY SSF50104 126 269 1.87E-56 T 18-10-2018 IPR008991 Translation protein SH3-like domain superfamily RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Gene3D G3DSA:2.40.110.10 161 281 3.9E-94 T 18-10-2018 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Gene3D G3DSA:1.20.140.10 282 451 3.9E-94 T 18-10-2018 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 1.2E-16 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 SUPERFAMILY SSF56645 38 279 2.36E-57 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 33 9.4E-7 T 18-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Gene3D G3DSA:1.10.540.10 44 160 3.9E-94 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 SUPERFAMILY SSF47203 288 474 7.73E-47 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 583 3.0E-24 T 18-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 450 3.4E-17 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_03025 523550d3709ee1dfc95db1f6d741a5ce 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 1.1E-15 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_17655 d134df5e63b73f4be956ea674f409114 262 Gene3D G3DSA:3.30.460.10 4 98 9.1E-8 T 18-10-2018 RU84_17655 d134df5e63b73f4be956ea674f409114 262 SUPERFAMILY SSF81301 9 88 7.27E-11 T 18-10-2018 RU84_17655 d134df5e63b73f4be956ea674f409114 262 Pfam PF01909 Nucleotidyltransferase domain 12 89 3.3E-6 T 18-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RU84_17655 d134df5e63b73f4be956ea674f409114 262 Pfam PF13427 Domain of unknown function (DUF4111) 147 247 5.2E-20 T 18-10-2018 IPR025184 Domain of unknown function DUF4111 RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 Pfam PF01546 Peptidase family M20/M25/M40 92 427 9.2E-32 T 18-10-2018 IPR002933 Peptidase M20 GO:0016787 RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 Gene3D G3DSA:3.40.630.10 34 416 2.0E-127 T 18-10-2018 RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 Pfam PF07687 Peptidase dimerisation domain 226 322 4.8E-13 T 18-10-2018 IPR011650 Peptidase M20, dimerisation domain RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 SUPERFAMILY SSF55031 224 331 1.96E-26 T 18-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 PIRSF PIRSF005962 20 435 2.2E-111 T 18-10-2018 IPR017439 Amidohydrolase GO:0016787 RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 SUPERFAMILY SSF53187 22 430 2.26E-76 T 18-10-2018 RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 35 419 4.0E-100 T 18-10-2018 IPR017439 Amidohydrolase GO:0016787 RU84_04575 89e1314eef2b39bacf8cff64f8836e17 444 Gene3D G3DSA:3.30.70.360 221 336 2.0E-127 T 18-10-2018 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 7 551 52.357 T 18-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 Gene3D G3DSA:3.30.160.270 377 549 1.2E-52 T 18-10-2018 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 Pfam PF00682 HMGL-like 33 313 4.2E-77 T 18-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 SUPERFAMILY SSF110921 442 549 2.75E-29 T 18-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 550 3.2E-229 T 18-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 549 2.2E-24 T 18-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 SUPERFAMILY SSF89000 388 438 9.02E-16 T 18-10-2018 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 40 56 - T 18-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 SMART SM00917 422 550 1.6E-27 T 18-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 18-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 SUPERFAMILY SSF51569 22 330 3.11E-99 T 18-10-2018 RU84_15990 1ae28a4b147e13e9eb8c3c30a0013a34 565 Gene3D G3DSA:3.20.20.70 10 376 1.5E-153 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 Gene3D G3DSA:3.20.20.10 33 274 3.8E-146 T 18-10-2018 IPR029066 PLP-binding barrel RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 Gene3D G3DSA:2.40.37.10 16 407 3.8E-146 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 SUPERFAMILY SSF50621 255 412 3.14E-49 T 18-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 227 240 - T 18-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 56 74 - T 18-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 3.0E-30 T 18-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 3.0E-30 T 18-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 74 91 3.0E-30 T 18-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 163 172 3.0E-30 T 18-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 5.6E-25 T 18-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 189 202 5.6E-25 T 18-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 56 74 5.6E-25 T 18-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 76 88 5.6E-25 T 18-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 269 288 5.6E-25 T 18-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 411 40.378 T 18-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 SUPERFAMILY SSF51419 25 281 5.63E-81 T 18-10-2018 IPR029066 PLP-binding barrel RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 279 1.6E-73 T 18-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 368 5.4E-22 T 18-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 RU84_04340 6adcc4893a4be5ebf7ab479b9285e590 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 410 3.8E-160 T 18-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_05820 8c3ba3c527803287c04348793345337c 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 390 3.2E-10 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_05820 8c3ba3c527803287c04348793345337c 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 3.2E-10 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_05820 8c3ba3c527803287c04348793345337c 452 Gene3D G3DSA:3.30.565.10 291 446 6.6E-33 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_05820 8c3ba3c527803287c04348793345337c 452 Gene3D G3DSA:1.10.287.130 174 290 2.0E-20 T 18-10-2018 RU84_05820 8c3ba3c527803287c04348793345337c 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 446 4.8E-18 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_05820 8c3ba3c527803287c04348793345337c 452 SUPERFAMILY SSF47384 208 290 1.22E-16 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_05820 8c3ba3c527803287c04348793345337c 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 225 288 1.4E-13 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_05820 8c3ba3c527803287c04348793345337c 452 SUPERFAMILY SSF55874 281 446 8.25E-32 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_05820 8c3ba3c527803287c04348793345337c 452 SMART SM00387 339 448 1.7E-26 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_05820 8c3ba3c527803287c04348793345337c 452 SMART SM00388 224 290 1.7E-14 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 Gene3D G3DSA:3.30.465.10 350 429 8.8E-31 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 SUPERFAMILY SSF54631 201 336 5.66E-23 T 18-10-2018 RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 Pfam PF03471 Transporter associated domain 350 427 8.5E-22 T 18-10-2018 IPR005170 Transporter-associated domain RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 SMART SM01091 349 429 6.4E-30 T 18-10-2018 IPR005170 Transporter-associated domain RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 SUPERFAMILY SSF56176 347 431 2.73E-23 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 Pfam PF01595 Domain of unknown function DUF21 8 199 3.4E-38 T 18-10-2018 IPR002550 CNNM, transmembrane domain RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 Gene3D G3DSA:3.10.580.10 195 349 3.2E-34 T 18-10-2018 RU84_12725 626329dc9ab67fb6b1925f875d3f079a 441 Pfam PF00571 CBS domain 288 331 4.9E-5 T 18-10-2018 IPR000644 CBS domain RU84_08700 9e094f9a64a935ad70035f435e47cbbe 476 SUPERFAMILY SSF160387 383 472 6.8E-10 T 18-10-2018 RU84_08700 9e094f9a64a935ad70035f435e47cbbe 476 Gene3D G3DSA:3.40.190.10 132 232 5.9E-41 T 18-10-2018 RU84_08700 9e094f9a64a935ad70035f435e47cbbe 476 SUPERFAMILY SSF53850 57 336 1.92E-39 T 18-10-2018 RU84_08700 9e094f9a64a935ad70035f435e47cbbe 476 Gene3D G3DSA:3.40.190.10 73 291 5.9E-41 T 18-10-2018 RU84_08700 9e094f9a64a935ad70035f435e47cbbe 476 Pfam PF13379 NMT1-like family 75 276 3.9E-12 T 18-10-2018 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 Pfam PF00285 Citrate synthase, C-terminal domain 18 366 1.2E-113 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 ProSitePatterns PS00480 Citrate synthase signature. 267 279 - T 18-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 Gene3D G3DSA:1.10.580.10 38 364 1.3E-126 T 18-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 Gene3D G3DSA:1.10.230.10 233 331 1.3E-126 T 18-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PRINTS PR00143 Citrate synthase signature 185 200 9.1E-37 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PRINTS PR00143 Citrate synthase signature 317 333 9.1E-37 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PRINTS PR00143 Citrate synthase signature 207 235 9.1E-37 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PRINTS PR00143 Citrate synthase signature 260 280 9.1E-37 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PRINTS PR00143 Citrate synthase signature 135 148 9.1E-37 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PRINTS PR00143 Citrate synthase signature 337 351 9.1E-37 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 SUPERFAMILY SSF48256 19 375 8.77E-122 T 18-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 PIRSF PIRSF001369 11 385 3.6E-109 T 18-10-2018 IPR024176 Citrate synthase, bacterial-type RU84_17910 a6f13dfa4e87a9dbc14053c479bc7597 385 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 17 384 6.0E-152 T 18-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 Gene3D G3DSA:1.10.8.10 1 56 5.4E-25 T 18-10-2018 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 18-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 Gene3D G3DSA:1.10.286.20 188 234 3.3E-37 T 18-10-2018 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 Gene3D G3DSA:3.30.479.20 153 268 3.3E-37 T 18-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 Pfam PF00889 Elongation factor TS 71 269 1.1E-61 T 18-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 286 1.6E-95 T 18-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 Gene3D G3DSA:3.30.479.20 57 148 1.2E-26 T 18-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 SUPERFAMILY SSF54713 57 269 9.81E-44 T 18-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 Hamap MF_00050 Elongation factor Ts [tsf]. 1 288 73.753 T 18-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 18-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_05635 dbc095092f00b69109bda7bc72543d0c 291 SUPERFAMILY SSF46934 4 54 4.76E-18 T 18-10-2018 IPR009060 UBA-like superfamily GO:0005515 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 SUPERFAMILY SSF47203 233 388 9.67E-45 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 Gene3D G3DSA:1.10.540.10 2 125 2.1E-46 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 344 363 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 385 1.1E-39 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 123 7.0E-37 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 PIRSF PIRSF016578 12 390 4.0E-17 T 18-10-2018 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 Gene3D G3DSA:2.40.110.10 126 239 9.9E-46 T 18-10-2018 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 Gene3D G3DSA:1.20.140.10 240 390 7.5E-45 T 18-10-2018 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 9.6E-26 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10395 30d739e4b1695ee018df1787fb73b705 390 SUPERFAMILY SSF56645 5 247 4.45E-87 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_04830 feaf69264996f174ec9424083af3366b 673 Gene3D G3DSA:3.40.50.300 1 238 8.8E-77 T 18-10-2018 RU84_04830 feaf69264996f174ec9424083af3366b 673 SMART SM00490 461 547 3.1E-21 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_04830 feaf69264996f174ec9424083af3366b 673 Gene3D G3DSA:3.40.50.300 416 590 9.8E-50 T 18-10-2018 RU84_04830 feaf69264996f174ec9424083af3366b 673 Gene3D G3DSA:4.10.860.10 615 673 5.4E-10 T 18-10-2018 RU84_04830 feaf69264996f174ec9424083af3366b 673 Pfam PF12344 Ultra-violet resistance protein B 553 593 1.7E-21 T 18-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain RU84_04830 feaf69264996f174ec9424083af3366b 673 Gene3D G3DSA:3.40.50.300 267 415 2.4E-52 T 18-10-2018 RU84_04830 feaf69264996f174ec9424083af3366b 673 Pfam PF04851 Type III restriction enzyme, res subunit 17 89 2.3E-11 T 18-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RU84_04830 feaf69264996f174ec9424083af3366b 673 SMART SM00487 11 427 8.2E-28 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_04830 feaf69264996f174ec9424083af3366b 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 5 670 43.31 T 18-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 RU84_04830 feaf69264996f174ec9424083af3366b 673 SUPERFAMILY SSF46600 634 672 3.53E-11 T 18-10-2018 IPR036876 UVR domain superfamily RU84_04830 feaf69264996f174ec9424083af3366b 673 SUPERFAMILY SSF52540 5 416 4.6E-144 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04830 feaf69264996f174ec9424083af3366b 673 Pfam PF00271 Helicase conserved C-terminal domain 442 545 5.4E-18 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_04830 feaf69264996f174ec9424083af3366b 673 Pfam PF02151 UvrB/uvrC motif 638 670 9.2E-10 T 18-10-2018 IPR001943 UVR domain GO:0005515 RU84_04830 feaf69264996f174ec9424083af3366b 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 7 668 0.0 T 18-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 RU84_04830 feaf69264996f174ec9424083af3366b 673 SUPERFAMILY SSF52540 35 587 5.94E-38 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 Pfam PF00925 GTP cyclohydrolase II 210 365 4.0E-29 T 18-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 SUPERFAMILY SSF55821 2 202 1.53E-85 T 18-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.835 T 18-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 2.7E-83 T 18-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 Gene3D G3DSA:3.90.870.10 1 206 3.0E-87 T 18-10-2018 RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 199 1.3E-74 T 18-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 PIRSF PIRSF001259 2 373 5.4E-115 T 18-10-2018 RU84_00455 a227796ab471f0abb5c9026ec82f8fc2 373 SUPERFAMILY SSF142695 205 365 3.92E-35 T 18-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_13985 ee425448566a862236e07ba74d383ef4 404 Pfam PF00589 Phage integrase family 242 383 1.6E-19 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_13985 ee425448566a862236e07ba74d383ef4 404 Pfam PF13356 Arm DNA-binding domain 6 89 1.5E-16 T 18-10-2018 IPR025166 Integrase, DNA-binding domain RU84_13985 ee425448566a862236e07ba74d383ef4 404 Gene3D G3DSA:3.30.160.390 4 91 2.5E-29 T 18-10-2018 IPR038488 Integrase, DNA-binding domain superfamily RU84_13985 ee425448566a862236e07ba74d383ef4 404 Gene3D G3DSA:1.10.443.10 216 395 9.4E-20 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_13985 ee425448566a862236e07ba74d383ef4 404 SUPERFAMILY SSF56349 101 393 2.88E-47 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_13985 ee425448566a862236e07ba74d383ef4 404 Gene3D G3DSA:1.10.150.130 93 215 5.3E-17 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_13810 2db988b48ccbc04b2c98754e8255d64f 270 Pfam PF13614 AAA domain 3 166 7.6E-22 T 18-10-2018 IPR025669 AAA domain RU84_13810 2db988b48ccbc04b2c98754e8255d64f 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 3.3E-106 T 18-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 RU84_13810 2db988b48ccbc04b2c98754e8255d64f 270 Gene3D G3DSA:3.40.50.300 1 259 4.6E-72 T 18-10-2018 RU84_13810 2db988b48ccbc04b2c98754e8255d64f 270 PIRSF PIRSF003092 1 270 2.3E-88 T 18-10-2018 IPR025501 ATP binding protein MinD RU84_13810 2db988b48ccbc04b2c98754e8255d64f 270 SUPERFAMILY SSF52540 2 267 3.86E-54 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 Gene3D G3DSA:3.40.640.10 153 369 3.0E-82 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 SMART SM00345 23 82 2.2E-16 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 Gene3D G3DSA:3.90.1150.10 116 462 3.0E-82 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 Pfam PF00155 Aminotransferase class I and II 131 461 2.2E-41 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 Gene3D G3DSA:1.10.10.10 18 115 2.4E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 SUPERFAMILY SSF46785 12 85 1.53E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 82 1.8E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_07350 8f43b701d68a7d4e7db0abc11630e310 479 SUPERFAMILY SSF53383 104 462 1.58E-86 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_09700 59504fd03bd01a57b87bec63f596a323 309 SUPERFAMILY SSF103481 192 289 6.54E-12 T 18-10-2018 RU84_09700 59504fd03bd01a57b87bec63f596a323 309 Pfam PF00892 EamA-like transporter family 11 141 6.1E-21 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_09700 59504fd03bd01a57b87bec63f596a323 309 Pfam PF00892 EamA-like transporter family 156 289 3.5E-22 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_09700 59504fd03bd01a57b87bec63f596a323 309 SUPERFAMILY SSF103481 48 145 2.09E-13 T 18-10-2018 RU84_03145 87409f525dd097a57a958e119a1624da 907 SUPERFAMILY SSF52540 6 412 1.82E-81 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 336 358 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 410 423 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 373 390 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 63 87 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 170 190 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 117 127 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 PRINTS PR00906 SecA protein signature 101 115 1.7E-70 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 830 19.645 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 Pfam PF07517 SecA DEAD-like domain 8 399 1.1E-128 T 18-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RU84_03145 87409f525dd097a57a958e119a1624da 907 SUPERFAMILY SSF81767 227 365 6.15E-41 T 18-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 RU84_03145 87409f525dd097a57a958e119a1624da 907 Gene3D G3DSA:3.40.50.300 414 618 1.2E-84 T 18-10-2018 RU84_03145 87409f525dd097a57a958e119a1624da 907 Gene3D G3DSA:1.10.3060.10 619 830 1.9E-71 T 18-10-2018 RU84_03145 87409f525dd097a57a958e119a1624da 907 SUPERFAMILY SSF52540 413 616 8.27E-55 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_03145 87409f525dd097a57a958e119a1624da 907 Pfam PF07516 SecA Wing and Scaffold domain 615 827 3.3E-65 T 18-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 RU84_03145 87409f525dd097a57a958e119a1624da 907 Gene3D G3DSA:3.40.50.300 22 412 5.5E-171 T 18-10-2018 RU84_03145 87409f525dd097a57a958e119a1624da 907 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 814 0.0 T 18-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 RU84_03145 87409f525dd097a57a958e119a1624da 907 SMART SM00957 6 399 3.8E-296 T 18-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 RU84_03145 87409f525dd097a57a958e119a1624da 907 ProSitePatterns PS01312 SecA family signature. 498 513 - T 18-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 RU84_03145 87409f525dd097a57a958e119a1624da 907 Pfam PF02810 SEC-C motif 888 906 6.5E-10 T 18-10-2018 IPR004027 SEC-C motif RU84_03145 87409f525dd097a57a958e119a1624da 907 SUPERFAMILY SSF81886 618 896 5.49E-78 T 18-10-2018 IPR036266 SecA, Wing/Scaffold superfamily RU84_03145 87409f525dd097a57a958e119a1624da 907 SMART SM00958 228 355 9.6E-74 T 18-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RU84_03145 87409f525dd097a57a958e119a1624da 907 Gene3D G3DSA:3.90.1440.10 229 365 5.5E-171 T 18-10-2018 RU84_03145 87409f525dd097a57a958e119a1624da 907 Pfam PF01043 SecA preprotein cross-linking domain 232 355 5.7E-37 T 18-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 Pfam PF00155 Aminotransferase class I and II 117 457 3.6E-25 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 Gene3D G3DSA:3.40.640.10 143 362 4.2E-87 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 8.5E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 SMART SM00345 7 66 3.1E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 Gene3D G3DSA:3.90.1150.10 99 466 4.2E-87 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 SUPERFAMILY SSF53383 96 469 3.48E-77 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 SUPERFAMILY SSF46785 3 76 1.67E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_05780 11f9c4483bfe6b37c1f2115e81fd80f1 486 Gene3D G3DSA:1.10.10.10 1 68 8.6E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 296 35.561 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 178 196 5.2E-39 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 215 232 5.2E-39 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 266 275 5.2E-39 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 244 255 5.2E-39 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 144 158 5.2E-39 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 42 297 4.1E-108 T 18-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 Gene3D G3DSA:3.90.226.10 42 297 2.3E-75 T 18-10-2018 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 Pfam PF01039 Carboxyl transferase domain 107 257 4.6E-18 T 18-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RU84_03115 caf7b32eb567d24f68b392fe3e6d76df 298 SUPERFAMILY SSF52096 43 296 1.62E-76 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 PIRSF PIRSF000429 1 401 2.5E-114 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 SUPERFAMILY SSF53901 4 401 4.1E-63 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 Pfam PF02803 Thiolase, C-terminal domain 278 400 9.9E-48 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 Gene3D G3DSA:3.40.47.10 6 298 1.1E-145 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.4E-134 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 Gene3D G3DSA:3.40.47.10 125 396 1.1E-145 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 Pfam PF00108 Thiolase, N-terminal domain 5 228 8.3E-47 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_03190 f2d36995ec57d161d43fe4e5b1383453 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 18-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RU84_08445 3fc4249d923e5df26fdff4d8a3488d8b 254 SMART SM00382 26 212 2.9E-13 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_08445 3fc4249d923e5df26fdff4d8a3488d8b 254 Gene3D G3DSA:3.40.50.300 1 248 2.2E-63 T 18-10-2018 RU84_08445 3fc4249d923e5df26fdff4d8a3488d8b 254 Pfam PF00005 ABC transporter 17 164 1.4E-29 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_08445 3fc4249d923e5df26fdff4d8a3488d8b 254 SUPERFAMILY SSF52540 2 215 4.47E-58 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_08445 3fc4249d923e5df26fdff4d8a3488d8b 254 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_17305 becea133a79d6842cc3014e9f7bb6c31 258 Gene3D G3DSA:3.40.225.10 25 256 3.4E-54 T 18-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RU84_17305 becea133a79d6842cc3014e9f7bb6c31 258 SMART SM01007 32 210 7.0E-46 T 18-10-2018 IPR001303 Class II aldolase/adducin N-terminal RU84_17305 becea133a79d6842cc3014e9f7bb6c31 258 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 32 210 9.4E-39 T 18-10-2018 IPR001303 Class II aldolase/adducin N-terminal RU84_17305 becea133a79d6842cc3014e9f7bb6c31 258 SUPERFAMILY SSF53639 25 237 2.94E-63 T 18-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily RU84_17230 7306547694818703ba914b5188843bd2 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 354 3.3E-66 T 18-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 RU84_17230 7306547694818703ba914b5188843bd2 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 6 354 1.5E-105 T 18-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 RU84_18160 81e28e0caa9fe9daa4492ad8d6071b5d 391 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 382 79.937 T 18-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RU84_18160 81e28e0caa9fe9daa4492ad8d6071b5d 391 Pfam PF00296 Luciferase-like monooxygenase 1 327 1.7E-87 T 18-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RU84_18160 81e28e0caa9fe9daa4492ad8d6071b5d 391 Gene3D G3DSA:3.20.20.30 1 363 8.4E-144 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_18160 81e28e0caa9fe9daa4492ad8d6071b5d 391 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 351 2.0E-190 T 18-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 RU84_18160 81e28e0caa9fe9daa4492ad8d6071b5d 391 SUPERFAMILY SSF51679 1 351 4.45E-96 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_10440 15866e49b9c5457e3309e56dbcd0c479 144 Gene3D G3DSA:3.10.129.10 7 144 6.0E-35 T 18-10-2018 RU84_10440 15866e49b9c5457e3309e56dbcd0c479 144 SUPERFAMILY SSF54637 4 140 3.02E-34 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_10440 15866e49b9c5457e3309e56dbcd0c479 144 Pfam PF03061 Thioesterase superfamily 56 132 6.6E-12 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_10440 15866e49b9c5457e3309e56dbcd0c479 144 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 140 5.0E-18 T 18-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 164 188 1.3E-13 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 9 31 1.3E-13 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 125 133 1.3E-13 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 11 192 3.7E-25 T 18-10-2018 RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 SUPERFAMILY SSF51905 165 335 5.19E-7 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 SUPERFAMILY SSF51905 8 204 1.7E-40 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 Gene3D G3DSA:3.50.50.60 2 354 2.9E-125 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 8.4E-6 T 18-10-2018 RU84_15495 1c0dbc22bba8c2dbbfbcd0c951530ea1 355 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 8.4E-6 T 18-10-2018 RU84_10605 1957654c02b6caa5e022077d52888541 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_10605 1957654c02b6caa5e022077d52888541 485 Gene3D G3DSA:3.40.309.10 261 450 2.3E-178 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_10605 1957654c02b6caa5e022077d52888541 485 Gene3D G3DSA:3.40.605.10 24 473 2.3E-178 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_10605 1957654c02b6caa5e022077d52888541 485 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 31 476 3.5E-207 T 18-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 RU84_10605 1957654c02b6caa5e022077d52888541 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_10605 1957654c02b6caa5e022077d52888541 485 SUPERFAMILY SSF53720 8 481 3.4E-167 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_10605 1957654c02b6caa5e022077d52888541 485 Pfam PF00171 Aldehyde dehydrogenase family 19 476 3.4E-164 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_00995 e7d3945b7c8342d82958404f4ef90c59 480 Pfam PF00324 Amino acid permease 24 433 2.3E-104 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_00995 e7d3945b7c8342d82958404f4ef90c59 480 ProSitePatterns PS00218 Amino acid permeases signature. 49 79 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_00995 e7d3945b7c8342d82958404f4ef90c59 480 PIRSF PIRSF006060 2 479 5.8E-71 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_00995 e7d3945b7c8342d82958404f4ef90c59 480 Gene3D G3DSA:1.20.1740.10 16 469 1.1E-61 T 18-10-2018 RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 9.6E-68 T 18-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 Gene3D G3DSA:1.10.455.10 2 155 1.5E-59 T 18-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 18-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 SUPERFAMILY SSF47973 6 149 3.27E-59 T 18-10-2018 IPR036823 Ribosomal protein S7 domain superfamily RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.166 T 18-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 PIRSF PIRSF002122 3 156 2.1E-58 T 18-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 RU84_13880 66c99aa8d1d8d78ebc5d284ac688565f 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.9E-64 T 18-10-2018 IPR023798 Ribosomal protein S7 domain RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 349 368 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 Gene3D G3DSA:1.10.540.10 11 132 1.0E-39 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 Gene3D G3DSA:1.20.140.10 249 390 5.0E-43 T 18-10-2018 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 Gene3D G3DSA:2.40.110.10 133 248 3.6E-41 T 18-10-2018 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 389 1.9E-40 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 SUPERFAMILY SSF56645 14 253 1.7E-87 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 SUPERFAMILY SSF47203 241 390 8.86E-46 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 130 1.1E-36 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_02150 8e4e2138c96af7d1d95b5864b0c39692 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 230 4.6E-26 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_09595 e8e989d9f78516c65cc890568e9541ad 135 Pfam PF02566 OsmC-like protein 36 132 1.2E-21 T 18-10-2018 IPR003718 OsmC/Ohr family RU84_09595 e8e989d9f78516c65cc890568e9541ad 135 SUPERFAMILY SSF82784 4 134 9.55E-36 T 18-10-2018 IPR036102 OsmC/Ohr superfamily RU84_09595 e8e989d9f78516c65cc890568e9541ad 135 Gene3D G3DSA:3.30.300.20 1 135 5.8E-37 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_14400 aae4fd394dd47e0af71446f5639472df 193 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 18-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RU84_14400 aae4fd394dd47e0af71446f5639472df 193 SUPERFAMILY SSF53178 5 191 1.14E-68 T 18-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 RU84_14400 aae4fd394dd47e0af71446f5639472df 193 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 188 3.9E-64 T 18-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RU84_14400 aae4fd394dd47e0af71446f5639472df 193 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 181 34.883 T 18-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RU84_14400 aae4fd394dd47e0af71446f5639472df 193 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 18-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 RU84_14400 aae4fd394dd47e0af71446f5639472df 193 Gene3D G3DSA:3.40.50.1470 1 193 1.2E-75 T 18-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 RU84_14400 aae4fd394dd47e0af71446f5639472df 193 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 5.2E-54 T 18-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 RU84_11605 e840f6129f4715af558c38e15c4399b7 495 Gene3D G3DSA:3.50.50.60 1 176 4.5E-56 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11605 e840f6129f4715af558c38e15c4399b7 495 SUPERFAMILY SSF51905 284 489 1.34E-22 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11605 e840f6129f4715af558c38e15c4399b7 495 Gene3D G3DSA:3.50.50.60 297 493 2.5E-45 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11605 e840f6129f4715af558c38e15c4399b7 495 Pfam PF00743 Flavin-binding monooxygenase-like 13 346 1.3E-17 T 18-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RU84_11605 e840f6129f4715af558c38e15c4399b7 495 SUPERFAMILY SSF51905 10 479 5.42E-58 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10600 89a021c235e4241c7be191e80440bf8d 127 Gene3D G3DSA:1.20.1290.10 3 125 2.1E-36 T 18-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RU84_10600 89a021c235e4241c7be191e80440bf8d 127 SUPERFAMILY SSF69118 4 122 4.06E-34 T 18-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RU84_10600 89a021c235e4241c7be191e80440bf8d 127 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 2.4E-22 T 18-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 PIRSF PIRSF000151 1 421 3.2E-181 T 18-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 Gene3D G3DSA:3.40.309.10 229 378 2.4E-165 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 327 348 - T 18-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 Gene3D G3DSA:3.40.605.10 15 417 2.4E-165 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 Pfam PF00171 Aldehyde dehydrogenase family 313 377 2.3E-6 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 Pfam PF00171 Aldehyde dehydrogenase family 9 289 2.8E-16 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 420 41.458 T 18-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 SUPERFAMILY SSF53720 8 420 1.96E-120 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_15910 03ff10e3e612d52ae91998b45aa2c46c 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 16 410 1.3E-152 T 18-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 SUPERFAMILY SSF51905 24 229 3.13E-49 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 25 223 7.8E-16 T 18-10-2018 RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 SUPERFAMILY SSF51905 291 491 9.97E-13 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 Gene3D G3DSA:3.50.50.60 6 180 6.0E-50 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 Gene3D G3DSA:3.50.50.60 327 504 4.5E-26 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 22 44 1.2E-7 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 183 207 1.2E-7 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11555 a73dd8c58937a92d64a159f7550af8a1 516 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 152 1.2E-7 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_12190 9bd1df81807ebd57c7cb10611da64ff3 213 Pfam PF01545 Cation efflux family 24 200 7.4E-14 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_12190 9bd1df81807ebd57c7cb10611da64ff3 213 Gene3D G3DSA:1.20.1510.10 77 201 8.0E-7 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_12190 9bd1df81807ebd57c7cb10611da64ff3 213 SUPERFAMILY SSF161111 19 200 1.57E-35 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 PIRSF PIRSF005457 1 243 3.7E-96 T 18-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 Gene3D G3DSA:3.60.15.10 5 243 8.6E-82 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 SMART SM00849 15 173 2.0E-33 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 174 243 5.6E-22 T 18-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 Pfam PF00753 Metallo-beta-lactamase superfamily 47 173 2.8E-14 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 5 243 40.834 T 18-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 SUPERFAMILY SSF56281 4 243 2.49E-66 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_06445 fd0d144bedf92f1474cb3d6d12bfc0cf 243 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 10 237 4.5E-96 T 18-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 SUPERFAMILY SSF46785 2 110 1.69E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 Gene3D G3DSA:1.10.10.10 1 80 7.7E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 Gene3D G3DSA:3.40.190.10 172 260 4.9E-6 T 18-10-2018 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.0E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 SUPERFAMILY SSF53850 87 275 8.38E-30 T 18-10-2018 RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 Pfam PF03466 LysR substrate binding domain 86 265 4.7E-28 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10900 6b3a759f3d91ed908b22f693da4be695 303 Gene3D G3DSA:3.40.190.10 81 171 5.4E-15 T 18-10-2018 RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 4.2E-18 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 Gene3D G3DSA:3.30.70.920 56 140 2.3E-19 T 18-10-2018 RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 SUPERFAMILY SSF54909 68 144 2.32E-14 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 47 8.8E-10 T 18-10-2018 RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 SMART SM00344 3 112 9.3E-22 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 SUPERFAMILY SSF46785 2 104 2.83E-9 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09760 d171cb535b154114b76bfdbc1ca502f0 156 Gene3D G3DSA:1.10.10.10 1 55 2.3E-9 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 Pfam PF04055 Radical SAM superfamily 88 249 9.6E-14 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 Gene3D G3DSA:3.20.20.70 81 273 1.3E-21 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 SUPERFAMILY SSF102114 49 313 4.58E-65 T 18-10-2018 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 TIGRFAM TIGR00510 lipA: lipoyl synthase 31 310 4.5E-122 T 18-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 Hamap MF_00206 Lipoyl synthase [lipA]. 1 322 150.295 T 18-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 PIRSF PIRSF005963 1 334 1.4E-128 T 18-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 34 70 7.6E-7 T 18-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_05595 9fe0a1b41f5b222d5a7f46cd2c0fe1ad 337 SMART SM00729 81 286 4.8E-20 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 Pfam PF03466 LysR substrate binding domain 87 294 6.4E-41 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 Gene3D G3DSA:1.10.10.10 2 91 3.1E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 Gene3D G3DSA:3.40.190.10 92 290 1.6E-58 T 18-10-2018 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 Gene3D G3DSA:3.40.190.10 165 271 1.6E-58 T 18-10-2018 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 SUPERFAMILY SSF46785 3 88 3.18E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 SUPERFAMILY SSF53850 89 298 5.07E-35 T 18-10-2018 RU84_09965 790463c6ab7c4552cc2b05736ac72f8f 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 2.4E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10030 80c45894865ba7e5d7e97bbaf1689d17 264 Gene3D G3DSA:3.40.50.300 2 260 3.8E-62 T 18-10-2018 RU84_10030 80c45894865ba7e5d7e97bbaf1689d17 264 Pfam PF00005 ABC transporter 21 161 2.2E-30 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_10030 80c45894865ba7e5d7e97bbaf1689d17 264 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_10030 80c45894865ba7e5d7e97bbaf1689d17 264 SMART SM00382 30 229 2.2E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_10030 80c45894865ba7e5d7e97bbaf1689d17 264 SUPERFAMILY SSF52540 4 218 1.01E-61 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15480 e6878940eeeb6ff63c49cc2a209ecaba 407 Pfam PF06114 IrrE N-terminal-like domain 247 374 3.4E-11 T 18-10-2018 IPR010359 IrrE N-terminal-like domain RU84_15480 e6878940eeeb6ff63c49cc2a209ecaba 407 SUPERFAMILY SSF47413 66 122 7.6E-7 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_15480 e6878940eeeb6ff63c49cc2a209ecaba 407 Gene3D G3DSA:1.10.260.40 55 125 1.3E-5 T 18-10-2018 RU84_16680 822a976b0e20f93aa7e8f93d0d6c60a8 460 Gene3D G3DSA:3.40.50.300 1 384 2.7E-19 T 18-10-2018 RU84_16680 822a976b0e20f93aa7e8f93d0d6c60a8 460 Pfam PF13476 AAA domain 5 237 6.2E-12 T 18-10-2018 IPR038729 Rad50/SbcC-type AAA domain RU84_16680 822a976b0e20f93aa7e8f93d0d6c60a8 460 SUPERFAMILY SSF52540 1 385 1.39E-15 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16595 28fca8261d1cdfecc9aa384d2ff8d998 403 SUPERFAMILY SSF144083 293 355 7.85E-20 T 18-10-2018 RU84_16595 28fca8261d1cdfecc9aa384d2ff8d998 403 Gene3D G3DSA:1.20.58.340 163 299 3.0E-7 T 18-10-2018 RU84_16595 28fca8261d1cdfecc9aa384d2ff8d998 403 Pfam PF01544 CorA-like Mg2+ transporter protein 47 354 7.6E-46 T 18-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RU84_16595 28fca8261d1cdfecc9aa384d2ff8d998 403 SUPERFAMILY SSF143865 38 291 9.81E-18 T 18-10-2018 RU84_16595 28fca8261d1cdfecc9aa384d2ff8d998 403 Gene3D G3DSA:3.30.460.20 9 146 3.3E-5 T 18-10-2018 RU84_16595 28fca8261d1cdfecc9aa384d2ff8d998 403 Gene3D G3DSA:1.20.58.340 301 357 3.3E-20 T 18-10-2018 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Gene3D G3DSA:3.40.309.10 824 1020 1.1E-144 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 547 1049 1.0E-222 T 18-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Pfam PF01619 Proline dehydrogenase 206 506 1.3E-97 T 18-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 SUPERFAMILY SSF53720 574 1049 4.84E-128 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 SUPERFAMILY SSF51730 198 555 9.81E-119 T 18-10-2018 IPR029041 FAD-linked oxidoreductase-like RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 849 860 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 PIRSF PIRSF000197 11 1249 0.0 T 18-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 84 195 1.5E-44 T 18-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Pfam PF00171 Aldehyde dehydrogenase family 598 1048 6.9E-119 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Gene3D G3DSA:3.20.20.220 143 547 4.8E-148 T 18-10-2018 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Gene3D G3DSA:3.20.20.220 24 122 2.1E-10 T 18-10-2018 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 SUPERFAMILY SSF81935 25 197 3.92E-62 T 18-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 RU84_09560 335ac916d2d924a0ec74b41732bd29c9 1250 Gene3D G3DSA:3.40.605.10 571 1049 1.1E-144 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_14340 aa9891eae1ebbe018b2dfa9b9a92ed60 385 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 10 254 1.4E-76 T 18-10-2018 IPR017689 Outer membrane protein assembly factor BamD RU84_14340 aa9891eae1ebbe018b2dfa9b9a92ed60 385 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 7 252 35.631 T 18-10-2018 IPR017689 Outer membrane protein assembly factor BamD RU84_14340 aa9891eae1ebbe018b2dfa9b9a92ed60 385 SUPERFAMILY SSF48452 43 122 1.94E-8 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_14340 aa9891eae1ebbe018b2dfa9b9a92ed60 385 Pfam PF13525 Outer membrane lipoprotein 39 243 5.7E-61 T 18-10-2018 IPR039565 Outer membrane lipoprotein BamD-like RU84_14340 aa9891eae1ebbe018b2dfa9b9a92ed60 385 Gene3D G3DSA:1.25.40.10 40 261 5.9E-52 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 Gene3D G3DSA:3.40.50.300 11 189 4.1E-60 T 18-10-2018 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 SUPERFAMILY SSF52540 20 183 6.64E-31 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01460 f7cad80ee658274038554f149bbce7ea 189 PRINTS PR01100 Shikimate kinase family signature 91 100 1.3E-25 T 18-10-2018 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 PRINTS PR01100 Shikimate kinase family signature 21 36 1.3E-25 T 18-10-2018 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 PRINTS PR01100 Shikimate kinase family signature 112 129 1.3E-25 T 18-10-2018 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 PRINTS PR01100 Shikimate kinase family signature 73 81 1.3E-25 T 18-10-2018 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 PRINTS PR01100 Shikimate kinase family signature 45 58 1.3E-25 T 18-10-2018 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 ProSitePatterns PS01128 Shikimate kinase signature. 74 99 - T 18-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 Hamap MF_00109 Shikimate kinase [aroK]. 18 184 29.932 T 18-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RU84_01460 f7cad80ee658274038554f149bbce7ea 189 Pfam PF01202 Shikimate kinase 27 183 9.6E-54 T 18-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Gene3D G3DSA:1.10.1780.10 1 143 1.8E-38 T 18-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 6.8E-15 T 18-10-2018 IPR004176 Clp, N-terminal RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Gene3D G3DSA:3.40.50.300 167 354 6.9E-64 T 18-10-2018 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 560 578 2.4E-38 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 489 507 2.4E-38 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 531 549 2.4E-38 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 593 607 2.4E-38 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 18-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 SMART SM00382 205 351 4.7E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 SMART SM00382 485 652 6.8E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 305 1.1E-12 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 516 534 - T 18-10-2018 IPR028299 ClpA/B, conserved site 2 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 733 0.0 T 18-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 654 731 4.4E-23 T 18-10-2018 IPR019489 Clp ATPase, C-terminal RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 SUPERFAMILY SSF52540 168 420 7.9E-65 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Gene3D G3DSA:3.40.50.300 437 649 3.7E-81 T 18-10-2018 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Gene3D G3DSA:1.10.8.60 651 754 3.3E-28 T 18-10-2018 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Gene3D G3DSA:1.10.8.60 355 436 2.3E-31 T 18-10-2018 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 SMART SM01086 651 743 1.9E-27 T 18-10-2018 IPR019489 Clp ATPase, C-terminal RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 SUPERFAMILY SSF81923 1 141 2.49E-49 T 18-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 484 643 3.1E-48 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_07825 3d86f73acd3361961c1d7cfbcea98d89 758 SUPERFAMILY SSF52540 435 727 4.36E-76 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17330 bf0e3e50c6d75f7e1bb0f9d3141df278 132 Pfam PF01124 MAPEG family 7 129 1.2E-23 T 18-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein RU84_17330 bf0e3e50c6d75f7e1bb0f9d3141df278 132 SUPERFAMILY SSF161084 7 129 5.49E-28 T 18-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily RU84_17330 bf0e3e50c6d75f7e1bb0f9d3141df278 132 Gene3D G3DSA:1.20.120.550 4 131 2.9E-17 T 18-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Gene3D G3DSA:1.10.1160.10 285 363 5.1E-33 T 18-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 SUPERFAMILY SSF52374 52 370 3.85E-96 T 18-10-2018 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 7 570 50.442 T 18-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 51 361 3.9E-108 T 18-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Gene3D G3DSA:3.40.50.620 52 271 1.3E-102 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 364 549 1.6E-57 T 18-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Gene3D G3DSA:2.40.240.10 364 567 2.6E-79 T 18-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Gene3D G3DSA:2.40.240.10 372 486 2.6E-79 T 18-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 SUPERFAMILY SSF50715 364 569 3.66E-70 T 18-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 Gene3D G3DSA:3.90.800.10 125 233 1.3E-102 T 18-10-2018 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 PRINTS PR00987 Glutamyl-tRNA synthetase signature 234 244 3.2E-7 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 PRINTS PR00987 Glutamyl-tRNA synthetase signature 55 67 3.2E-7 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 PRINTS PR00987 Glutamyl-tRNA synthetase signature 84 97 3.2E-7 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_06860 dac0dc096f61b5442a0443e0892edf70 575 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 53 570 5.6E-229 T 18-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 ProSitePatterns PS00012 Phosphopantetheine attachment site. 217 232 - T 18-10-2018 IPR006162 Phosphopantetheine attachment site RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 SUPERFAMILY SSF47336 188 257 1.7E-12 T 18-10-2018 IPR036736 ACP-like superfamily RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 Pfam PF00668 Condensation domain 274 697 4.2E-58 T 18-10-2018 IPR001242 Condensation domain RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 SUPERFAMILY SSF52777 15 166 1.0E-9 T 18-10-2018 RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 SUPERFAMILY SSF52777 278 449 5.34E-35 T 18-10-2018 RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 Gene3D G3DSA:3.30.559.30 453 697 2.4E-75 T 18-10-2018 RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 SUPERFAMILY SSF52777 454 697 6.45E-37 T 18-10-2018 RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 Gene3D G3DSA:3.30.559.10 282 645 2.4E-75 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 Gene3D G3DSA:3.40.50.1820 181 281 8.1E-14 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05315 5f47b203a7e4de6f4a18e4c7505e3b88 697 Pfam PF00550 Phosphopantetheine attachment site 204 257 4.8E-10 T 18-10-2018 IPR009081 Phosphopantetheine binding ACP domain RU84_17370 e705d31771e7093e02845af162d81d91 207 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 23 197 2.8E-59 T 18-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG RU84_17370 e705d31771e7093e02845af162d81d91 207 SUPERFAMILY SSF102405 20 198 2.29E-59 T 18-10-2018 RU84_17370 e705d31771e7093e02845af162d81d91 207 Pfam PF03641 Possible lysine decarboxylase 66 193 6.7E-41 T 18-10-2018 IPR031100 LOG family RU84_17370 e705d31771e7093e02845af162d81d91 207 Gene3D G3DSA:3.40.50.450 23 206 3.9E-70 T 18-10-2018 RU84_10565 474122a9e9a04df5c45b57133eeea712 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 73 1.0E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10565 474122a9e9a04df5c45b57133eeea712 240 Gene3D G3DSA:3.40.1410.10 78 237 1.8E-29 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_10565 474122a9e9a04df5c45b57133eeea712 240 SUPERFAMILY SSF46785 4 80 3.04E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10565 474122a9e9a04df5c45b57133eeea712 240 SMART SM00345 14 73 7.2E-18 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10565 474122a9e9a04df5c45b57133eeea712 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.0E-7 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10565 474122a9e9a04df5c45b57133eeea712 240 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.0E-7 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10565 474122a9e9a04df5c45b57133eeea712 240 Pfam PF07702 UTRA domain 94 230 1.3E-30 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_10565 474122a9e9a04df5c45b57133eeea712 240 SUPERFAMILY SSF64288 61 238 8.95E-38 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_10565 474122a9e9a04df5c45b57133eeea712 240 Gene3D G3DSA:1.10.10.10 8 77 1.6E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10565 474122a9e9a04df5c45b57133eeea712 240 SMART SM00866 94 233 7.6E-25 T 18-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 92 342 4.4E-71 T 18-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 Gene3D G3DSA:3.40.50.300 117 284 1.8E-44 T 18-10-2018 RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 Gene3D G3DSA:1.10.40.50 285 352 1.6E-21 T 18-10-2018 RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 Pfam PF03193 RsgA GTPase 114 285 1.7E-50 T 18-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 34 349 33.121 T 18-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 SUPERFAMILY SSF52540 128 348 3.32E-49 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15805 df002d1fe98ad5562f490aa6d50bb344 352 Gene3D G3DSA:2.40.50.140 31 116 3.5E-17 T 18-10-2018 RU84_16970 5322fc0044c9db610969f975b019ed50 168 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 18-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16970 5322fc0044c9db610969f975b019ed50 168 Gene3D G3DSA:3.30.70.1730 1 126 7.5E-31 T 18-10-2018 RU84_16970 5322fc0044c9db610969f975b019ed50 168 SUPERFAMILY SSF160369 5 162 2.62E-43 T 18-10-2018 RU84_16970 5322fc0044c9db610969f975b019ed50 168 Pfam PF00466 Ribosomal protein L10 6 103 5.5E-24 T 18-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 RU84_16970 5322fc0044c9db610969f975b019ed50 168 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 163 25.693 T 18-10-2018 IPR022973 Ribosomal protein L10 RU84_07125 d8484c84a7d38e33b9b1b005a71704da 522 Pfam PF00108 Thiolase, N-terminal domain 102 369 1.5E-47 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_07125 d8484c84a7d38e33b9b1b005a71704da 522 SUPERFAMILY SSF53901 102 375 6.29E-58 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07125 d8484c84a7d38e33b9b1b005a71704da 522 Gene3D G3DSA:3.40.47.10 91 522 1.0E-100 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07125 d8484c84a7d38e33b9b1b005a71704da 522 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 104 521 9.8E-114 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_07125 d8484c84a7d38e33b9b1b005a71704da 522 SUPERFAMILY SSF53901 398 521 1.83E-26 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07125 d8484c84a7d38e33b9b1b005a71704da 522 Pfam PF02803 Thiolase, C-terminal domain 396 522 2.0E-28 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 Gene3D G3DSA:3.40.50.150 83 270 1.5E-58 T 18-10-2018 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 177 183 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 Pfam PF05175 Methyltransferase small domain 92 194 4.7E-18 T 18-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 Gene3D G3DSA:1.10.8.10 2 81 5.5E-14 T 18-10-2018 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 270 39.816 T 18-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 SUPERFAMILY SSF53335 15 267 5.43E-54 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 22 266 5.1E-85 T 18-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 RU84_06645 e18ebc91f8630955f4f935f01e23687d 273 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 17 269 2.8E-69 T 18-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 SUPERFAMILY SSF51735 22 192 2.22E-50 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 21 338 33.636 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 SUPERFAMILY SSF48179 195 347 8.84E-50 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 Gene3D G3DSA:3.40.50.720 11 203 2.7E-61 T 18-10-2018 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 204 225 - T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 23 173 1.3E-49 T 18-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 Gene3D G3DSA:1.10.1040.10 205 351 9.4E-45 T 18-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PIRSF PIRSF000114 15 348 2.3E-103 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 196 334 5.5E-46 T 18-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 254 271 3.1E-38 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 214 238 3.1E-38 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 25 42 3.1E-38 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 149 169 3.1E-38 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 75 102 3.1E-38 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_05960 7ad65b796a07188c65ff87b5307238e3 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 189 213 3.1E-38 T 18-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 RU84_06680 d8c5159168c971bf062439d7d5d644a7 432 SUPERFAMILY SSF56112 79 351 2.08E-23 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_06680 d8c5159168c971bf062439d7d5d644a7 432 Pfam PF03109 ABC1 family 99 217 2.7E-31 T 18-10-2018 IPR004147 UbiB domain RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 3.4E-19 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 Gene3D G3DSA:1.10.10.10 11 100 1.0E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 Pfam PF03466 LysR substrate binding domain 98 299 6.1E-30 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 Gene3D G3DSA:3.40.190.10 109 295 3.3E-43 T 18-10-2018 RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 SUPERFAMILY SSF46785 9 120 2.52E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 Gene3D G3DSA:3.40.190.10 169 267 3.3E-43 T 18-10-2018 RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 3.0E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 3.0E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 3.0E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12915 3a143adca1f153f28dd1be8dbecb51fd 301 SUPERFAMILY SSF53850 98 300 4.71E-31 T 18-10-2018 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Gene3D G3DSA:2.20.25.90 4 69 4.8E-14 T 18-10-2018 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Gene3D G3DSA:3.40.228.10 143 336 3.0E-90 T 18-10-2018 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 SMART SM00926 10 64 1.9E-11 T 18-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 11 59 8.4E-12 T 18-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Gene3D G3DSA:3.40.50.740 74 485 3.0E-90 T 18-10-2018 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Pfam PF00384 Molybdopterin oxidoreductase 67 447 5.6E-47 T 18-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 SUPERFAMILY SSF53706 10 523 3.53E-117 T 18-10-2018 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 SUPERFAMILY SSF50692 635 758 5.88E-24 T 18-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Pfam PF01568 Molydopterin dinucleotide binding domain 639 752 1.2E-16 T 18-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RU84_07315 92eaeb0c74b6a5334008b477b1a6dcf7 759 Gene3D G3DSA:2.40.40.20 615 759 1.0E-19 T 18-10-2018 RU84_06515 131ff423b9ecf17cc001a1f7d98d9248 259 SMART SM00460 153 215 1.2E-16 T 18-10-2018 IPR002931 Transglutaminase-like RU84_06515 131ff423b9ecf17cc001a1f7d98d9248 259 SUPERFAMILY SSF54001 99 240 9.81E-40 T 18-10-2018 IPR038765 Papain-like cysteine peptidase superfamily RU84_06515 131ff423b9ecf17cc001a1f7d98d9248 259 Gene3D G3DSA:3.10.620.30 64 250 2.3E-47 T 18-10-2018 RU84_06515 131ff423b9ecf17cc001a1f7d98d9248 259 Pfam PF01841 Transglutaminase-like superfamily 126 212 4.4E-22 T 18-10-2018 IPR002931 Transglutaminase-like RU84_06515 131ff423b9ecf17cc001a1f7d98d9248 259 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 6.5E-11 T 18-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal RU84_02710 f2a36fb9c501a724e0092fdbd76859a9 355 Pfam PF00589 Phage integrase family 172 334 3.0E-15 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_02710 f2a36fb9c501a724e0092fdbd76859a9 355 Gene3D G3DSA:1.10.443.10 170 348 2.0E-22 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_02710 f2a36fb9c501a724e0092fdbd76859a9 355 Gene3D G3DSA:1.10.150.130 56 169 6.8E-8 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_02710 f2a36fb9c501a724e0092fdbd76859a9 355 SUPERFAMILY SSF56349 61 345 2.62E-43 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_05665 6fa1fe5076da70aeb6d8c5749fedb7dd 205 Gene3D G3DSA:2.40.40.10 107 201 2.3E-40 T 18-10-2018 IPR036908 RlpA-like domain superfamily RU84_05665 6fa1fe5076da70aeb6d8c5749fedb7dd 205 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 110 200 1.1E-42 T 18-10-2018 IPR012997 Rare lipoprotein A RU84_05665 6fa1fe5076da70aeb6d8c5749fedb7dd 205 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 16 200 24.95 T 18-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 RU84_05665 6fa1fe5076da70aeb6d8c5749fedb7dd 205 Pfam PF03330 Lytic transglycolase 108 196 1.5E-27 T 18-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain RU84_05665 6fa1fe5076da70aeb6d8c5749fedb7dd 205 SUPERFAMILY SSF50685 108 201 6.98E-15 T 18-10-2018 IPR036908 RlpA-like domain superfamily RU84_00660 c07fb1e365f772d1ca05128539667671 116 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 7 101 7.8E-8 T 18-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RU84_00660 c07fb1e365f772d1ca05128539667671 116 SUPERFAMILY SSF69754 1 95 1.44E-10 T 18-10-2018 IPR036567 Ribosome hibernation promotion factor-like RU84_00660 c07fb1e365f772d1ca05128539667671 116 Gene3D G3DSA:3.30.160.100 1 103 3.0E-6 T 18-10-2018 IPR036567 Ribosome hibernation promotion factor-like RU84_07300 b2a3465557992b0e3907820990a8132d 540 Gene3D G3DSA:3.30.390.30 450 512 7.5E-7 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 159 6.8E-11 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 367 381 6.8E-11 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 304 6.8E-11 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 413 6.8E-11 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 Gene3D G3DSA:3.50.50.60 247 373 2.2E-92 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07300 b2a3465557992b0e3907820990a8132d 540 Gene3D G3DSA:3.50.50.60 139 422 2.2E-92 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07300 b2a3465557992b0e3907820990a8132d 540 SUPERFAMILY SSF51905 135 324 5.01E-45 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07300 b2a3465557992b0e3907820990a8132d 540 SUPERFAMILY SSF51905 279 440 1.57E-29 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07300 b2a3465557992b0e3907820990a8132d 540 Gene3D G3DSA:2.102.10.10 9 121 4.3E-35 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_07300 b2a3465557992b0e3907820990a8132d 540 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 137 415 7.3E-57 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 252 4.3E-18 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 391 413 4.3E-18 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 366 382 4.3E-18 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 157 4.3E-18 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 297 4.3E-18 T 18-10-2018 RU84_07300 b2a3465557992b0e3907820990a8132d 540 Pfam PF13806 Rieske-like [2Fe-2S] domain 14 118 5.4E-38 T 18-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RU84_07300 b2a3465557992b0e3907820990a8132d 540 SUPERFAMILY SSF50022 14 123 2.62E-35 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_07300 b2a3465557992b0e3907820990a8132d 540 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 14 118 5.2E-31 T 18-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 Pfam PF00313 'Cold-shock' DNA-binding domain 5 66 5.5E-28 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 Gene3D G3DSA:2.40.50.140 4 67 9.9E-29 T 18-10-2018 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 SMART SM00357 5 68 7.5E-31 T 18-10-2018 IPR011129 Cold shock domain GO:0003676 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 SUPERFAMILY SSF50249 4 68 6.09E-24 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 PRINTS PR00050 Cold shock protein signature 41 59 1.5E-15 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 PRINTS PR00050 Cold shock protein signature 26 35 1.5E-15 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 PRINTS PR00050 Cold shock protein signature 6 21 1.5E-15 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 35 - T 18-10-2018 IPR019844 Cold-shock conserved site RU84_11180 9bab2e47a063deac18b6d405e365dc5f 71 PIRSF PIRSF002599 1 71 5.7E-24 T 18-10-2018 IPR012156 Cold shock, CspA GO:0003676 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 8.7E-13 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 8.7E-13 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 8.7E-13 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 Gene3D G3DSA:3.40.50.880 1 193 4.0E-61 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 SUPERFAMILY SSF52317 1 192 3.44E-54 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 2.6E-82 T 18-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 Pfam PF00117 Glutamine amidotransferase class-I 4 190 8.9E-53 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.8E-34 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.8E-34 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.8E-34 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.8E-34 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.8E-34 T 18-10-2018 RU84_05475 4a48ae5a397680518b78ad2aad9a4059 194 PRINTS PR00097 Anthranilate synthase component II signature 169 182 1.8E-34 T 18-10-2018 RU84_13565 b5638a7bfadce08358e41396423bab21 232 Pfam PF00717 Peptidase S24-like 145 213 1.5E-11 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_13565 b5638a7bfadce08358e41396423bab21 232 Pfam PF01381 Helix-turn-helix 20 66 2.6E-7 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_13565 b5638a7bfadce08358e41396423bab21 232 Gene3D G3DSA:1.10.260.40 7 101 1.0E-9 T 18-10-2018 RU84_13565 b5638a7bfadce08358e41396423bab21 232 SMART SM00530 10 66 4.5E-5 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_13565 b5638a7bfadce08358e41396423bab21 232 SUPERFAMILY SSF51306 102 230 3.27E-21 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_13565 b5638a7bfadce08358e41396423bab21 232 Gene3D G3DSA:2.10.109.10 102 231 9.8E-36 T 18-10-2018 RU84_13565 b5638a7bfadce08358e41396423bab21 232 SUPERFAMILY SSF47413 5 67 2.42E-10 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 SMART SM00448 1 111 1.5E-40 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 Pfam PF00072 Response regulator receiver domain 3 112 3.3E-25 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 Gene3D G3DSA:1.10.10.10 124 222 2.0E-28 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 218 1.2E-87 T 18-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 Gene3D G3DSA:3.40.50.2300 1 123 1.5E-36 T 18-10-2018 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 219 2.7E-22 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 SMART SM00862 144 219 1.3E-20 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_06325 f95ba9a299d285ad024e91d46bb013ec 223 SUPERFAMILY SSF52172 1 179 5.86E-43 T 18-10-2018 IPR011006 CheY-like superfamily RU84_02980 8ba03cee2075b5f3aadb9295751070fa 312 SUPERFAMILY SSF53756 46 249 3.66E-6 T 18-10-2018 RU84_02980 8ba03cee2075b5f3aadb9295751070fa 312 Pfam PF13524 Glycosyl transferases group 1 228 306 2.9E-14 T 18-10-2018 RU84_02980 8ba03cee2075b5f3aadb9295751070fa 312 Pfam PF12996 DUF based on E. rectale Gene description (DUF3880) 119 166 7.2E-6 T 18-10-2018 IPR024542 Domain of unknown function DUF3880 RU84_02980 8ba03cee2075b5f3aadb9295751070fa 312 Gene3D G3DSA:3.40.50.2000 151 299 1.1E-6 T 18-10-2018 RU84_08035 6278f26946648406f33891c9a1b8bd62 155 Gene3D G3DSA:1.10.10.10 4 152 1.1E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08035 6278f26946648406f33891c9a1b8bd62 155 Pfam PF01047 MarR family 58 102 7.0E-7 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_08035 6278f26946648406f33891c9a1b8bd62 155 SUPERFAMILY SSF46785 17 152 3.4E-23 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08035 6278f26946648406f33891c9a1b8bd62 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 8.3E-6 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_08035 6278f26946648406f33891c9a1b8bd62 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 8.3E-6 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_08035 6278f26946648406f33891c9a1b8bd62 155 PRINTS PR00598 Bacterial regulatory protein MarR family signature 128 148 8.3E-6 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_08035 6278f26946648406f33891c9a1b8bd62 155 SMART SM00347 38 138 1.5E-12 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_02960 569aed8e6cdcc72896585a585fa5300c 297 Gene3D G3DSA:3.90.25.10 163 289 9.2E-112 T 18-10-2018 RU84_02960 569aed8e6cdcc72896585a585fa5300c 297 Gene3D G3DSA:3.40.50.720 3 281 9.2E-112 T 18-10-2018 RU84_02960 569aed8e6cdcc72896585a585fa5300c 297 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 291 2.7E-99 T 18-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 RU84_02960 569aed8e6cdcc72896585a585fa5300c 297 Pfam PF04321 RmlD substrate binding domain 1 294 2.7E-106 T 18-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 RU84_02960 569aed8e6cdcc72896585a585fa5300c 297 SUPERFAMILY SSF51735 1 294 6.39E-96 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Gene3D G3DSA:3.40.50.2300 1040 1158 7.6E-17 T 18-10-2018 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Gene3D G3DSA:1.10.287.130 770 867 7.8E-12 T 18-10-2018 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SMART SM00388 804 869 2.2E-11 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 PRINTS PR00344 Bacterial sensor protein C-terminal signature 987 1005 9.5E-9 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 PRINTS PR00344 Bacterial sensor protein C-terminal signature 952 966 9.5E-9 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1011 1024 9.5E-9 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SUPERFAMILY SSF55785 642 764 1.22E-10 T 18-10-2018 IPR035965 PAS domain superfamily RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Gene3D G3DSA:3.30.565.10 868 1027 3.5E-32 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Gene3D G3DSA:1.20.1730.10 38 522 5.9E-18 T 18-10-2018 IPR038377 Sodium/glucose symporter superfamily RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Pfam PF00512 His Kinase A (phospho-acceptor) domain 804 869 7.0E-9 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 914 1024 3.8E-16 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SUPERFAMILY SSF55874 860 1029 7.33E-34 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SMART SM00387 913 1027 1.0E-19 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Pfam PF00072 Response regulator receiver domain 1048 1153 5.7E-11 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SUPERFAMILY SSF47384 792 869 1.43E-10 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SUPERFAMILY SSF52172 1046 1156 2.13E-14 T 18-10-2018 IPR011006 CheY-like superfamily RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Pfam PF12860 PAS fold 657 770 6.4E-43 T 18-10-2018 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 SMART SM00448 1046 1155 6.0E-8 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_00900 e66828454be4ba821bcf391221ea9425 1165 Gene3D G3DSA:3.30.450.20 639 769 3.1E-13 T 18-10-2018 RU84_11610 24ca44319f275278e283c550e86e11e0 284 Pfam PF00106 short chain dehydrogenase 7 200 1.2E-50 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.4E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 7.4E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.4E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.4E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 7.4E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.8E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.8E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.8E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11610 24ca44319f275278e283c550e86e11e0 284 SUPERFAMILY SSF51735 1 278 3.86E-67 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11610 24ca44319f275278e283c550e86e11e0 284 Gene3D G3DSA:3.40.50.720 1 280 6.6E-72 T 18-10-2018 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SUPERFAMILY SSF53098 312 460 4.48E-48 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Pfam PF00575 S1 RNA binding domain 640 711 1.3E-21 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Gene3D G3DSA:3.30.420.140 315 442 3.9E-134 T 18-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SUPERFAMILY SSF158832 1 311 6.67E-88 T 18-10-2018 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Gene3D G3DSA:1.10.10.650 1 108 2.5E-36 T 18-10-2018 IPR023319 Tex-like protein, HTH domain superfamily RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Pfam PF16921 Tex protein YqgF-like domain 317 442 6.4E-50 T 18-10-2018 IPR032639 Tex protein, YqgF-like domain RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Pfam PF12836 Helix-hairpin-helix motif 482 546 7.2E-26 T 18-10-2018 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SUPERFAMILY SSF47781 552 623 2.89E-19 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SUPERFAMILY SSF47781 461 549 1.45E-26 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Gene3D G3DSA:1.10.3500.10 112 489 3.9E-134 T 18-10-2018 IPR023323 Tex-like domain superfamily RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SMART SM00316 640 711 1.9E-25 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Gene3D G3DSA:1.10.150.310 490 621 8.3E-49 T 18-10-2018 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SMART SM00732 316 415 4.2E-31 T 18-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Pfam PF09371 Tex-like protein N-terminal domain 8 189 3.6E-54 T 18-10-2018 IPR018974 Tex-like protein, N-terminal RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 SUPERFAMILY SSF50249 628 717 3.86E-25 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_01260 9e581dff1c86d412bf8d9fb0d4db6f8c 782 Gene3D G3DSA:2.40.50.140 622 715 1.2E-29 T 18-10-2018 RU84_06200 fe089c2c057d4f90610d07e253571c2b 300 Pfam PF05673 Protein of unknown function (DUF815) 37 290 3.9E-92 T 18-10-2018 IPR008533 Domain of unknown function DUF815 RU84_06200 fe089c2c057d4f90610d07e253571c2b 300 SUPERFAMILY SSF52540 61 261 7.77E-22 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06200 fe089c2c057d4f90610d07e253571c2b 300 Gene3D G3DSA:3.40.50.300 56 196 5.5E-8 T 18-10-2018 RU84_13280 928470c52511bd862c258eef34ed6e34 1276 SUPERFAMILY SSF53335 941 1166 6.48E-20 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_13280 928470c52511bd862c258eef34ed6e34 1276 Pfam PF04851 Type III restriction enzyme, res subunit 329 465 2.3E-10 T 18-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RU84_13280 928470c52511bd862c258eef34ed6e34 1276 Gene3D G3DSA:3.40.50.300 328 477 7.4E-13 T 18-10-2018 RU84_13280 928470c52511bd862c258eef34ed6e34 1276 Gene3D G3DSA:3.40.50.150 999 1179 1.9E-14 T 18-10-2018 RU84_13280 928470c52511bd862c258eef34ed6e34 1276 SMART SM00487 324 581 0.0057 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_13280 928470c52511bd862c258eef34ed6e34 1276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 1079 1085 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_13280 928470c52511bd862c258eef34ed6e34 1276 Pfam PF00271 Helicase conserved C-terminal domain 803 887 1.7E-5 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_13280 928470c52511bd862c258eef34ed6e34 1276 SUPERFAMILY SSF52540 346 893 1.62E-18 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09805 8fa8d8308d3b0ec7596d7a54e97b0edd 470 PIRSF PIRSF000337 6 448 2.5E-128 T 18-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RU84_09805 8fa8d8308d3b0ec7596d7a54e97b0edd 470 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 11 434 5.0E-154 T 18-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RU84_09805 8fa8d8308d3b0ec7596d7a54e97b0edd 470 SUPERFAMILY SSF51679 8 437 4.97E-117 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_09805 8fa8d8308d3b0ec7596d7a54e97b0edd 470 Gene3D G3DSA:3.20.20.30 5 457 3.7E-138 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_09805 8fa8d8308d3b0ec7596d7a54e97b0edd 470 Pfam PF00296 Luciferase-like monooxygenase 31 383 3.6E-56 T 18-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SMART SM00437 291 545 2.0E-122 T 18-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SMART SM00436 153 241 2.6E-48 T 18-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SUPERFAMILY SSF57783 758 820 3.91E-15 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 328 342 - T 18-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:1.10.290.10 299 423 4.2E-158 T 18-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Pfam PF01751 Toprim domain 24 162 6.7E-32 T 18-10-2018 IPR006171 TOPRIM domain RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Pfam PF01131 DNA topoisomerase 178 583 8.9E-128 T 18-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:2.20.25.10 822 878 5.6E-22 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SUPERFAMILY SSF57783 823 877 2.38E-17 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Pfam PF08272 Topoisomerase I zinc-ribbon-like 838 877 9.0E-17 T 18-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Pfam PF08272 Topoisomerase I zinc-ribbon-like 772 807 8.7E-12 T 18-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SUPERFAMILY SSF57783 597 638 1.28E-10 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 24 648 7.3E-245 T 18-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:1.10.460.10 185 589 4.2E-158 T 18-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SUPERFAMILY SSF57783 716 756 1.24E-6 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 613 638 1.3E-6 T 18-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 727 758 5.8E-6 T 18-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SUPERFAMILY SSF56712 23 625 1.31E-201 T 18-10-2018 IPR023405 DNA topoisomerase, type IA, core domain RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:3.30.65.10 597 663 3.6E-6 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:3.30.65.10 713 758 6.7E-7 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:3.30.65.10 759 821 6.8E-22 T 18-10-2018 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 126 139 3.2E-37 T 18-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 409 425 3.2E-37 T 18-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 508 522 3.2E-37 T 18-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 211 229 3.2E-37 T 18-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 333 342 3.2E-37 T 18-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 SMART SM00493 22 152 1.4E-29 T 18-10-2018 IPR006171 TOPRIM domain RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:2.70.20.10 233 491 4.2E-158 T 18-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Hamap MF_00952 DNA topoisomerase 1 [topA]. 22 748 55.592 T 18-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 RU84_16165 e03989923100bd5ef7ddae6ccc81425a 878 Gene3D G3DSA:3.40.50.140 20 183 5.4E-67 T 18-10-2018 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 Gene3D G3DSA:3.40.50.720 115 234 5.7E-79 T 18-10-2018 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 Gene3D G3DSA:3.40.50.10860 5 253 5.7E-79 T 18-10-2018 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 SUPERFAMILY SSF53223 2 101 2.71E-31 T 18-10-2018 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 260 29.813 T 18-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 9.3E-24 T 18-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 SUPERFAMILY SSF51735 102 259 9.16E-35 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 259 2.4E-77 T 18-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 RU84_01860 913ed94bc711f054b4cbe29082d915fd 262 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 113 194 1.5E-13 T 18-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase RU84_16780 ee45a65b8357a8e2cf8081bd31b25286 304 SUPERFAMILY SSF103481 41 138 3.14E-10 T 18-10-2018 RU84_16780 ee45a65b8357a8e2cf8081bd31b25286 304 Pfam PF00892 EamA-like transporter family 151 282 1.7E-12 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_16780 ee45a65b8357a8e2cf8081bd31b25286 304 Pfam PF00892 EamA-like transporter family 7 138 6.6E-13 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_16295 e5a02a979f017645783528827a769633 216 SUPERFAMILY SSF56784 1 210 2.0E-31 T 18-10-2018 IPR036412 HAD-like superfamily RU84_16295 e5a02a979f017645783528827a769633 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 183 1.8E-31 T 18-10-2018 RU84_16295 e5a02a979f017645783528827a769633 216 Gene3D G3DSA:3.40.50.1000 3 211 8.9E-70 T 18-10-2018 IPR023214 HAD superfamily RU84_16295 e5a02a979f017645783528827a769633 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 8.5E-39 T 18-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RU84_16295 e5a02a979f017645783528827a769633 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 186 7.1E-20 T 18-10-2018 RU84_16295 e5a02a979f017645783528827a769633 216 Gene3D G3DSA:1.20.1440.100 15 88 8.9E-70 T 18-10-2018 RU84_10245 c97e3459a11fcddaabaa4998e53246d7 243 PIRSF PIRSF039085 1 242 1.5E-102 T 18-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RU84_10245 c97e3459a11fcddaabaa4998e53246d7 243 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_10245 c97e3459a11fcddaabaa4998e53246d7 243 Gene3D G3DSA:3.40.50.300 3 242 1.3E-77 T 18-10-2018 RU84_10245 c97e3459a11fcddaabaa4998e53246d7 243 SUPERFAMILY SSF52540 3 237 3.55E-75 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_10245 c97e3459a11fcddaabaa4998e53246d7 243 SMART SM00382 28 215 1.2E-17 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_10245 c97e3459a11fcddaabaa4998e53246d7 243 Pfam PF00005 ABC transporter 19 167 4.8E-34 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_16460 5f606395f6a4e5640629739c90d34c44 325 Pfam PF02371 Transposase IS116/IS110/IS902 family 201 285 1.9E-22 T 18-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 RU84_16460 5f606395f6a4e5640629739c90d34c44 325 Pfam PF01548 Transposase 4 154 3.3E-27 T 18-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 Pfam PF13393 Histidyl-tRNA synthetase 9 316 9.0E-45 T 18-10-2018 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 Gene3D G3DSA:3.30.930.10 2 327 7.1E-111 T 18-10-2018 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 Pfam PF03129 Anticodon binding domain 346 426 2.2E-12 T 18-10-2018 IPR004154 Anticodon-binding RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 430 32.22 T 18-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 416 3.3E-148 T 18-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 Gene3D G3DSA:3.40.50.800 329 427 2.6E-27 T 18-10-2018 IPR036621 Anticodon-binding domain superfamily RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 SUPERFAMILY SSF52954 343 427 2.62E-16 T 18-10-2018 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 PIRSF PIRSF001549 1 428 6.0E-125 T 18-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 RU84_15845 3d8b09c97123c28c42183dc6c1831b09 430 SUPERFAMILY SSF55681 7 324 6.17E-97 T 18-10-2018 RU84_13730 2e98ce26a9dfaa82b42b82c207842252 372 Gene3D G3DSA:3.40.50.300 102 355 1.9E-84 T 18-10-2018 RU84_13730 2e98ce26a9dfaa82b42b82c207842252 372 Pfam PF00437 Type II/IV secretion system protein 29 269 6.2E-35 T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_13730 2e98ce26a9dfaa82b42b82c207842252 372 SUPERFAMILY SSF52540 4 338 4.42E-65 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13730 2e98ce26a9dfaa82b42b82c207842252 372 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 345 3.2E-128 T 18-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 RU84_13730 2e98ce26a9dfaa82b42b82c207842252 372 Gene3D G3DSA:3.30.450.90 1 100 2.8E-25 T 18-10-2018 RU84_18030 428e05025801b339004a11e3c8d2a20b 332 Gene3D G3DSA:3.90.25.30 168 309 2.7E-129 T 18-10-2018 RU84_18030 428e05025801b339004a11e3c8d2a20b 332 Pfam PF02719 Polysaccharide biosynthesis protein 7 278 2.3E-98 T 18-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain RU84_18030 428e05025801b339004a11e3c8d2a20b 332 Gene3D G3DSA:3.40.50.720 6 305 2.7E-129 T 18-10-2018 RU84_18030 428e05025801b339004a11e3c8d2a20b 332 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 1 321 1.7E-167 T 18-10-2018 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00520+4.2.1.115|MetaCyc: PWY-6143|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 RU84_18030 428e05025801b339004a11e3c8d2a20b 332 SUPERFAMILY SSF51735 1 266 3.36E-51 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_06340 d5c074624e9014204cb7e015f0c420bb 323 Pfam PF00487 Fatty acid desaturase 56 278 5.2E-18 T 18-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RU84_06340 d5c074624e9014204cb7e015f0c420bb 323 PRINTS PR00075 Fatty acid desaturase family 1 signature 211 232 1.3E-27 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_06340 d5c074624e9014204cb7e015f0c420bb 323 PRINTS PR00075 Fatty acid desaturase family 1 signature 116 145 1.3E-27 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_06340 d5c074624e9014204cb7e015f0c420bb 323 PRINTS PR00075 Fatty acid desaturase family 1 signature 79 99 1.3E-27 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_06340 d5c074624e9014204cb7e015f0c420bb 323 PRINTS PR00075 Fatty acid desaturase family 1 signature 254 268 1.3E-27 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_06340 d5c074624e9014204cb7e015f0c420bb 323 PRINTS PR00075 Fatty acid desaturase family 1 signature 34 54 1.3E-27 T 18-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 RU84_05145 d0ea5837d45b010640d9b39b80323fd6 213 PIRSF PIRSF020606 1 212 2.3E-50 T 18-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 RU84_05145 d0ea5837d45b010640d9b39b80323fd6 213 Pfam PF09997 Predicted membrane protein (DUF2238) 42 191 3.5E-47 T 18-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 Pfam PF05593 RHS Repeat 651 687 4.7E-7 T 18-10-2018 IPR031325 RHS repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 Pfam PF05593 RHS Repeat 521 557 5.4E-6 T 18-10-2018 IPR031325 RHS repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 Gene3D G3DSA:2.180.10.10 1269 1395 5.5E-23 T 18-10-2018 RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 Gene3D G3DSA:2.180.10.10 916 1237 4.9E-8 T 18-10-2018 RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 Gene3D G3DSA:3.90.930.1 636 784 7.4E-17 T 18-10-2018 RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 Pfam PF03527 RHS protein 1289 1321 2.2E-11 T 18-10-2018 IPR001826 RHS protein RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 693 732 6.5E-6 T 18-10-2018 IPR006530 YD repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 735 775 1.1E-4 T 18-10-2018 IPR006530 YD repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 802 842 9.1E-5 T 18-10-2018 IPR006530 YD repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 651 690 5.3E-8 T 18-10-2018 IPR006530 YD repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 521 557 3.9E-5 T 18-10-2018 IPR006530 YD repeat RU84_11870 b7c45eac79c8ab889a67e272d20fcdcc 1590 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1316 1395 1.4E-23 T 18-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RU84_04175 c20363057f1941a07cc0b250839e6260 380 Gene3D G3DSA:3.20.20.190 36 372 1.4E-113 T 18-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RU84_04175 c20363057f1941a07cc0b250839e6260 380 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 42 366 1.1E-52 T 18-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RU84_04175 c20363057f1941a07cc0b250839e6260 380 SUPERFAMILY SSF51695 35 371 1.26E-75 T 18-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RU84_16580 99beb62f2bace99c2269f5eaa0410319 203 Pfam PF01810 LysE type translocator 14 200 2.7E-26 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_16830 5d85888854d91ef3d3090d79d90d0510 257 SMART SM00346 3 94 0.001 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_16830 5d85888854d91ef3d3090d79d90d0510 257 Gene3D G3DSA:1.10.10.10 2 75 2.7E-12 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16830 5d85888854d91ef3d3090d79d90d0510 257 SUPERFAMILY SSF55781 80 247 8.5E-28 T 18-10-2018 RU84_16830 5d85888854d91ef3d3090d79d90d0510 257 Gene3D G3DSA:3.30.450.40 76 243 5.3E-23 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_16830 5d85888854d91ef3d3090d79d90d0510 257 Pfam PF01614 Bacterial transcriptional regulator 129 246 6.0E-12 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_16830 5d85888854d91ef3d3090d79d90d0510 257 SUPERFAMILY SSF46785 3 74 7.49E-9 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_03720 28ee4f5ccfca57a0355973491c688836 444 Gene3D G3DSA:3.30.565.10 288 437 1.7E-28 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_03720 28ee4f5ccfca57a0355973491c688836 444 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 328 434 6.2E-17 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03720 28ee4f5ccfca57a0355973491c688836 444 Gene3D G3DSA:1.10.287.130 169 280 2.4E-19 T 18-10-2018 RU84_03720 28ee4f5ccfca57a0355973491c688836 444 SUPERFAMILY SSF47384 202 278 1.08E-12 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_03720 28ee4f5ccfca57a0355973491c688836 444 SUPERFAMILY SSF55874 286 435 2.1E-30 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_03720 28ee4f5ccfca57a0355973491c688836 444 SMART SM00387 326 437 5.4E-25 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03720 28ee4f5ccfca57a0355973491c688836 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 378 5.7E-7 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03720 28ee4f5ccfca57a0355973491c688836 444 PRINTS PR00344 Bacterial sensor protein C-terminal signature 396 414 5.7E-7 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_03720 28ee4f5ccfca57a0355973491c688836 444 SMART SM00388 218 280 2.5E-11 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_03720 28ee4f5ccfca57a0355973491c688836 444 Pfam PF00512 His Kinase A (phospho-acceptor) domain 219 278 2.0E-10 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_00745 140d7311c30006b5938e31205e422df3 420 Gene3D G3DSA:3.30.420.40 11 375 2.2E-83 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 PIRSF PIRSF003101 1 420 1.5E-101 T 18-10-2018 IPR020823 Cell division protein FtsA RU84_00745 140d7311c30006b5938e31205e422df3 420 Gene3D G3DSA:3.30.420.40 198 351 2.2E-83 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 380 3.9E-90 T 18-10-2018 IPR020823 Cell division protein FtsA RU84_00745 140d7311c30006b5938e31205e422df3 420 SMART SM00842 8 197 1.8E-61 T 18-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 RU84_00745 140d7311c30006b5938e31205e422df3 420 Gene3D G3DSA:3.90.640.10 236 299 2.2E-83 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 Pfam PF14450 Cell division protein FtsA 9 172 9.2E-9 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 Pfam PF14450 Cell division protein FtsA 208 377 9.4E-19 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 161 1.1E-6 T 18-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 RU84_00745 140d7311c30006b5938e31205e422df3 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 420 22.18 T 18-10-2018 IPR020823 Cell division protein FtsA RU84_00745 140d7311c30006b5938e31205e422df3 420 SUPERFAMILY SSF53067 199 380 8.84E-35 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 Gene3D G3DSA:3.30.1490.110 83 170 2.2E-83 T 18-10-2018 RU84_00745 140d7311c30006b5938e31205e422df3 420 SUPERFAMILY SSF53067 8 198 1.44E-36 T 18-10-2018 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 Pfam PF13180 PDZ domain 285 373 2.6E-15 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 SUPERFAMILY SSF50156 269 372 6.05E-23 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 SUPERFAMILY SSF50494 58 281 7.91E-62 T 18-10-2018 IPR009003 Peptidase S1, PA clan RU84_05545 2db5654b3ca0e737214aafc83554be61 391 SMART SM00228 284 364 2.7E-18 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 Gene3D G3DSA:2.40.10.120 58 277 5.8E-77 T 18-10-2018 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 1.1E-54 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 PRINTS PR00834 HtrA/DegQ protease family signature 238 255 1.1E-54 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 PRINTS PR00834 HtrA/DegQ protease family signature 142 162 1.1E-54 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 PRINTS PR00834 HtrA/DegQ protease family signature 181 205 1.1E-54 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 PRINTS PR00834 HtrA/DegQ protease family signature 121 133 1.1E-54 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 PRINTS PR00834 HtrA/DegQ protease family signature 322 334 1.1E-54 T 18-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 Gene3D G3DSA:2.30.42.10 279 385 5.0E-23 T 18-10-2018 RU84_05545 2db5654b3ca0e737214aafc83554be61 391 Pfam PF13365 Trypsin-like peptidase domain 112 245 1.4E-31 T 18-10-2018 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 SMART SM00244 21 179 7.8E-55 T 18-10-2018 IPR001107 Band 7 domain RU84_03680 3216e5aefb243b936635b24f1325a46f 284 PRINTS PR00721 Stomatin signature 155 173 5.7E-25 T 18-10-2018 IPR001972 Stomatin family GO:0016020 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 PRINTS PR00721 Stomatin signature 131 154 5.7E-25 T 18-10-2018 IPR001972 Stomatin family GO:0016020 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 PRINTS PR00721 Stomatin signature 28 50 5.7E-25 T 18-10-2018 IPR001972 Stomatin family GO:0016020 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 PRINTS PR00721 Stomatin signature 76 97 5.7E-25 T 18-10-2018 IPR001972 Stomatin family GO:0016020 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 PRINTS PR00721 Stomatin signature 111 128 5.7E-25 T 18-10-2018 IPR001972 Stomatin family GO:0016020 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 PRINTS PR00721 Stomatin signature 174 195 5.7E-25 T 18-10-2018 IPR001972 Stomatin family GO:0016020 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 SUPERFAMILY SSF117892 52 186 9.02E-38 T 18-10-2018 IPR036013 Band 7/SPFH domain superfamily RU84_03680 3216e5aefb243b936635b24f1325a46f 284 Gene3D G3DSA:3.30.479.30 49 181 7.0E-38 T 18-10-2018 RU84_03680 3216e5aefb243b936635b24f1325a46f 284 Pfam PF01145 SPFH domain / Band 7 family 25 195 3.7E-35 T 18-10-2018 IPR001107 Band 7 domain RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 38 918 0.0 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 305 321 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 872 893 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 322 341 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 767 780 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 717 732 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 426 439 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 822 843 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 735 746 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 PRINTS PR01836 Magnesium-transporting ATPase signature 787 803 1.2E-78 T 18-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 SUPERFAMILY SSF56784 549 704 3.69E-39 T 18-10-2018 IPR036412 HAD-like superfamily RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 SUPERFAMILY SSF81660 361 561 1.24E-42 T 18-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 394 400 - T 18-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Gene3D G3DSA:3.40.50.1000 567 699 7.1E-23 T 18-10-2018 IPR023214 HAD superfamily RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Gene3D G3DSA:2.70.150.10 136 267 8.3E-27 T 18-10-2018 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Gene3D G3DSA:1.20.1110.10 268 403 3.4E-12 T 18-10-2018 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 SUPERFAMILY SSF81653 191 291 2.22E-26 T 18-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Gene3D G3DSA:3.40.1110.10 404 566 4.0E-57 T 18-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 SUPERFAMILY SSF81665 53 916 1.18E-98 T 18-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 628 748 3.9E-29 T 18-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 193 413 2.3E-29 T 18-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Pfam PF00702 haloacid dehalogenase-like hydrolase 388 673 6.3E-20 T 18-10-2018 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Gene3D G3DSA:1.20.1110.10 700 824 9.3E-10 T 18-10-2018 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Pfam PF00690 Cation transporter/ATPase, N-terminus 56 117 1.6E-12 T 18-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 Pfam PF00122 E1-E2 ATPase 189 372 1.4E-42 T 18-10-2018 RU84_07085 59cd13819eb6292112fb7b169f5e6d8d 918 SMART SM00831 49 122 4.6E-10 T 18-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 RU84_02040 c33405a233cdbb3fa95feff001038950 250 SUPERFAMILY SSF54821 108 206 1.57E-40 T 18-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02040 c33405a233cdbb3fa95feff001038950 250 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 3.4E-95 T 18-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RU84_02040 c33405a233cdbb3fa95feff001038950 250 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 18-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02040 c33405a233cdbb3fa95feff001038950 250 Gene3D G3DSA:3.30.300.20 18 107 2.6E-26 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_02040 c33405a233cdbb3fa95feff001038950 250 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 18-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02040 c33405a233cdbb3fa95feff001038950 250 Pfam PF07650 KH domain 39 110 6.4E-18 T 18-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02040 c33405a233cdbb3fa95feff001038950 250 Gene3D G3DSA:3.30.1140.32 108 208 3.7E-45 T 18-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02040 c33405a233cdbb3fa95feff001038950 250 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.283 T 18-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 RU84_02040 c33405a233cdbb3fa95feff001038950 250 SUPERFAMILY SSF54814 2 106 1.02E-35 T 18-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RU84_02040 c33405a233cdbb3fa95feff001038950 250 SMART SM00322 60 125 4.4E-6 T 18-10-2018 IPR004087 K Homology domain GO:0003676 RU84_18055 7cea8acd9a652e405a2bb516ec631756 240 Gene3D G3DSA:3.10.50.40 100 240 2.8E-54 T 18-10-2018 RU84_18055 7cea8acd9a652e405a2bb516ec631756 240 Gene3D G3DSA:1.10.287.460 40 98 6.4E-10 T 18-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 RU84_18055 7cea8acd9a652e405a2bb516ec631756 240 SUPERFAMILY SSF54534 43 240 4.42E-57 T 18-10-2018 RU84_18055 7cea8acd9a652e405a2bb516ec631756 240 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 150 237 1.1E-30 T 18-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RU84_18055 7cea8acd9a652e405a2bb516ec631756 240 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 36 142 7.7E-22 T 18-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 Gene3D G3DSA:1.10.10.10 9 74 5.9E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.8E-9 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.8E-9 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.8E-9 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 Gene3D G3DSA:3.40.190.10 191 279 1.1E-20 T 18-10-2018 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 SUPERFAMILY SSF53850 92 310 1.57E-31 T 18-10-2018 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 Gene3D G3DSA:3.40.190.10 85 190 4.5E-24 T 18-10-2018 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 Pfam PF03466 LysR substrate binding domain 91 306 3.6E-28 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 9.0E-19 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14950 85b02c9dbbc28c5ad914845893c627e6 315 SUPERFAMILY SSF46785 3 83 6.15E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_19380 57131f5691b17fe59902a6ca45e22467 309 Gene3D G3DSA:1.10.10.10 1 140 4.3E-41 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_19380 57131f5691b17fe59902a6ca45e22467 309 Pfam PF01051 Initiator Replication protein 2 226 2.6E-54 T 18-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 RU84_19380 57131f5691b17fe59902a6ca45e22467 309 SUPERFAMILY SSF46785 128 230 8.16E-30 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_19380 57131f5691b17fe59902a6ca45e22467 309 Gene3D G3DSA:1.10.10.10 141 234 2.1E-28 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_19380 57131f5691b17fe59902a6ca45e22467 309 SUPERFAMILY SSF46785 3 128 1.09E-31 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 Gene3D G3DSA:1.10.540.10 7 119 2.1E-133 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 378 9.6E-49 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 PIRSF PIRSF016578 109 364 3.2E-13 T 18-10-2018 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 PIRSF PIRSF016578 4 86 5.3E-7 T 18-10-2018 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 SUPERFAMILY SSF47203 229 381 1.03E-55 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 SUPERFAMILY SSF56645 9 243 4.58E-80 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 Gene3D G3DSA:1.20.140.10 230 375 2.1E-133 T 18-10-2018 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 117 6.4E-30 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 3.3E-29 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_10470 e1f2e2abaa56514ff1d765aa598b0f15 384 Gene3D G3DSA:2.40.110.10 120 229 2.1E-133 T 18-10-2018 RU84_13675 7e7e3e6a4e948c84ede8c623b494c403 165 Gene3D G3DSA:3.10.129.10 12 165 2.1E-41 T 18-10-2018 RU84_13675 7e7e3e6a4e948c84ede8c623b494c403 165 Pfam PF03061 Thioesterase superfamily 68 156 5.0E-15 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_13675 7e7e3e6a4e948c84ede8c623b494c403 165 SUPERFAMILY SSF54637 24 162 1.01E-21 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_13675 7e7e3e6a4e948c84ede8c623b494c403 165 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 43 158 4.5E-12 T 18-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 247 298 2.2E-6 T 18-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 184 245 1.7E-12 T 18-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 SUPERFAMILY SSF55120 12 243 6.62E-81 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 Gene3D G3DSA:3.30.2350.10 3 247 2.5E-92 T 18-10-2018 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 13 299 19.085 T 18-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 14 221 1.9E-77 T 18-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_01620 e34b5d6d780e28fff4cc7db98c4b1ae8 301 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 35 183 8.9E-61 T 18-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 RU84_16190 76b97e08427993af12ff7aff312c34af 636 Pfam PF12848 ABC transporter 223 296 7.7E-12 T 18-10-2018 IPR032781 ABC-transporter extension domain RU84_16190 76b97e08427993af12ff7aff312c34af 636 SUPERFAMILY SSF52540 308 526 1.66E-40 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16190 76b97e08427993af12ff7aff312c34af 636 Gene3D G3DSA:1.10.287.380 555 636 5.3E-22 T 18-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 RU84_16190 76b97e08427993af12ff7aff312c34af 636 SMART SM00382 343 513 1.1E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_16190 76b97e08427993af12ff7aff312c34af 636 SMART SM00382 28 230 2.3E-12 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_16190 76b97e08427993af12ff7aff312c34af 636 SUPERFAMILY SSF52540 3 242 3.07E-48 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16190 76b97e08427993af12ff7aff312c34af 636 Pfam PF00005 ABC transporter 19 183 2.9E-24 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_16190 76b97e08427993af12ff7aff312c34af 636 Gene3D G3DSA:3.40.50.300 281 554 1.5E-59 T 18-10-2018 RU84_16190 76b97e08427993af12ff7aff312c34af 636 Pfam PF16326 ABC transporter C-terminal domain 562 631 1.3E-19 T 18-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 RU84_16190 76b97e08427993af12ff7aff312c34af 636 Gene3D G3DSA:3.40.50.300 4 278 6.5E-65 T 18-10-2018 RU84_16190 76b97e08427993af12ff7aff312c34af 636 Pfam PF00005 ABC transporter 336 467 5.5E-20 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_16190 76b97e08427993af12ff7aff312c34af 636 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_10050 ef2190f905dc3fabe901189166b9047d 463 Pfam PF00296 Luciferase-like monooxygenase 25 389 3.4E-48 T 18-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RU84_10050 ef2190f905dc3fabe901189166b9047d 463 Gene3D G3DSA:3.20.20.30 1 457 3.2E-142 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_10050 ef2190f905dc3fabe901189166b9047d 463 PIRSF PIRSF000337 2 449 3.8E-140 T 18-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RU84_10050 ef2190f905dc3fabe901189166b9047d 463 SUPERFAMILY SSF51679 1 440 1.14E-122 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_10050 ef2190f905dc3fabe901189166b9047d 463 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 434 7.8E-166 T 18-10-2018 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 RU84_02105 0e86c0aaa49f0b327a38dec1caf24227 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 5 146 18.194 T 18-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 RU84_02105 0e86c0aaa49f0b327a38dec1caf24227 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 145 1.4E-26 T 18-10-2018 IPR021131 Ribosomal protein L18e/L15P RU84_02105 0e86c0aaa49f0b327a38dec1caf24227 146 Gene3D G3DSA:3.100.10.10 73 146 3.5E-13 T 18-10-2018 RU84_02105 0e86c0aaa49f0b327a38dec1caf24227 146 SUPERFAMILY SSF52080 6 145 3.66E-41 T 18-10-2018 IPR036227 Ribosomal L18e/L15P superfamily RU84_02105 0e86c0aaa49f0b327a38dec1caf24227 146 ProSitePatterns PS00475 Ribosomal protein L15 signature. 111 141 - T 18-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02105 0e86c0aaa49f0b327a38dec1caf24227 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 4 145 9.3E-45 T 18-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_08830 0729e66ae571ab48869aefe573375691 334 SUPERFAMILY SSF53335 21 318 5.47E-47 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_08830 0729e66ae571ab48869aefe573375691 334 Pfam PF05175 Methyltransferase small domain 147 256 3.3E-18 T 18-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RU84_08830 0729e66ae571ab48869aefe573375691 334 PIRSF PIRSF037167 5 332 1.4E-136 T 18-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RU84_08830 0729e66ae571ab48869aefe573375691 334 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 11 325 50.111 T 18-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RU84_08830 0729e66ae571ab48869aefe573375691 334 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 229 235 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_08830 0729e66ae571ab48869aefe573375691 334 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 20 328 2.6E-77 T 18-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 RU84_08830 0729e66ae571ab48869aefe573375691 334 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 18 319 4.4E-112 T 18-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 RU84_08830 0729e66ae571ab48869aefe573375691 334 Gene3D G3DSA:3.40.50.150 109 308 1.0E-49 T 18-10-2018 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 Pfam PF04545 Sigma-70, region 4 232 282 7.8E-15 T 18-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 5 287 52.265 T 18-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 19 286 7.1E-124 T 18-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 52 285 1.3E-32 T 18-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 Gene3D G3DSA:1.10.10.10 211 287 7.6E-14 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 PRINTS PR00046 Major sigma-70 factor signature 255 270 9.6E-18 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 PRINTS PR00046 Major sigma-70 factor signature 236 248 9.6E-18 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 PRINTS PR00046 Major sigma-70 factor signature 270 281 9.6E-18 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 PRINTS PR00046 Major sigma-70 factor signature 81 94 9.6E-18 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 Pfam PF04542 Sigma-70 region 2 57 126 2.7E-16 T 18-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 SUPERFAMILY SSF88946 19 126 5.49E-40 T 18-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 81 94 - T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 Pfam PF00140 Sigma-70 factor, region 1.2 20 44 1.1E-5 T 18-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 SUPERFAMILY SSF88659 200 285 5.61E-18 T 18-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 Gene3D G3DSA:1.20.120.1810 19 126 2.0E-27 T 18-10-2018 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 PIRSF PIRSF000770 12 288 2.6E-32 T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05930 5c54d4a4597b8a669ba4d85f5146ccf6 288 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 255 281 - T 18-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 18-10-2018 IPR018313 Solute-binding protein family 3, conserved site RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 Gene3D G3DSA:3.40.190.10 32 255 7.8E-81 T 18-10-2018 RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 Gene3D G3DSA:3.40.190.10 116 216 7.8E-81 T 18-10-2018 RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 13 256 1.5E-83 T 18-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 SMART SM00062 30 259 2.2E-71 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 257 3.8E-63 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_05745 beb05b7654ba8b72bdb4a9f7eef2aad5 261 SUPERFAMILY SSF53850 5 259 3.65E-69 T 18-10-2018 RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 SUPERFAMILY SSF53686 14 399 3.14E-148 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 13 402 52.11 T 18-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 92 106 - T 18-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 PIRSF PIRSF001413 2 408 6.3E-166 T 18-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 64 389 9.3E-47 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 Gene3D G3DSA:3.40.50.1100 21 217 9.6E-185 T 18-10-2018 RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 Gene3D G3DSA:3.40.50.1100 65 395 9.6E-185 T 18-10-2018 RU84_03085 1eb0f7116eb71bcd712274b46f9c4f3a 409 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 18 400 5.4E-190 T 18-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 Gene3D G3DSA:1.10.10.10 134 237 7.7E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 Pfam PF00072 Response regulator receiver domain 13 122 1.7E-25 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 SMART SM00862 155 231 2.5E-18 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 Gene3D G3DSA:3.40.50.2300 3 133 1.7E-32 T 18-10-2018 RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 SUPERFAMILY SSF52172 11 190 1.71E-37 T 18-10-2018 IPR011006 CheY-like superfamily RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 SMART SM00448 11 121 1.6E-33 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_06715 f2cf872b97143de8c06728e00bce43b1 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 230 7.1E-20 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_13850 b5062035104f18a85781a09f0e8a51ba 271 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 11 239 39.671 T 18-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 RU84_13850 b5062035104f18a85781a09f0e8a51ba 271 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 21 91 8.6E-16 T 18-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 RU84_13850 b5062035104f18a85781a09f0e8a51ba 271 PIRSF PIRSF037208 4 252 3.0E-97 T 18-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 RU84_13850 b5062035104f18a85781a09f0e8a51ba 271 SUPERFAMILY SSF55729 84 243 5.16E-28 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_13850 b5062035104f18a85781a09f0e8a51ba 271 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 113 233 8.2E-39 T 18-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 9.1E-28 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 18-10-2018 IPR019844 Cold-shock conserved site RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 PRINTS PR00050 Cold shock protein signature 7 22 4.1E-18 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 PRINTS PR00050 Cold shock protein signature 27 36 4.1E-18 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 PRINTS PR00050 Cold shock protein signature 42 60 4.1E-18 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 Gene3D G3DSA:2.40.50.140 1 70 1.8E-27 T 18-10-2018 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 PIRSF PIRSF002599 1 70 4.9E-22 T 18-10-2018 IPR012156 Cold shock, CspA GO:0003676 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 SMART SM00357 6 69 2.9E-28 T 18-10-2018 IPR011129 Cold shock domain GO:0003676 RU84_05940 0e17fde790c36bbef0dca78beea04bc7 70 SUPERFAMILY SSF50249 2 69 1.16E-24 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 SUPERFAMILY SSF52343 100 227 5.11E-29 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Pfam PF00175 Oxidoreductase NAD-binding domain 115 203 9.6E-9 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Gene3D G3DSA:3.10.20.30 223 318 2.5E-24 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 54 68 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 92 106 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 78 92 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 114 133 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 139 148 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 190 198 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 PRINTS PR00409 Phthalate dioxygenase reductase family signature 32 42 6.3E-30 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Gene3D G3DSA:3.40.50.80 104 222 1.7E-26 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 SUPERFAMILY SSF54292 214 316 8.65E-26 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 240 309 3.9E-12 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Gene3D G3DSA:2.40.30.10 2 103 6.9E-22 T 18-10-2018 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Pfam PF00970 Oxidoreductase FAD-binding domain 10 101 1.4E-5 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 SUPERFAMILY SSF63380 4 102 2.5E-22 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 Hamap MF_02098 Carnitine monooxygenase reductase subunit. 8 318 83.175 T 18-10-2018 IPR039003 Carnitine monooxygenase reductase subunit GO:0009437 RU84_13930 8a14963151ccc0e3d81c7e10b06c41d6 318 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 267 275 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_04820 aae544498360ba6194f5bf374042d6a8 478 SUPERFAMILY SSF55785 48 150 4.0E-7 T 18-10-2018 IPR035965 PAS domain superfamily RU84_04820 aae544498360ba6194f5bf374042d6a8 478 Gene3D G3DSA:3.30.70.270 312 475 1.2E-38 T 18-10-2018 RU84_04820 aae544498360ba6194f5bf374042d6a8 478 SUPERFAMILY SSF55073 327 470 1.44E-30 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_04820 aae544498360ba6194f5bf374042d6a8 478 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 318 470 3.0E-32 T 18-10-2018 IPR000160 GGDEF domain RU84_04820 aae544498360ba6194f5bf374042d6a8 478 SUPERFAMILY SSF55785 216 318 5.23E-10 T 18-10-2018 IPR035965 PAS domain superfamily RU84_04820 aae544498360ba6194f5bf374042d6a8 478 Gene3D G3DSA:3.30.450.20 39 167 2.3E-7 T 18-10-2018 RU84_04820 aae544498360ba6194f5bf374042d6a8 478 Gene3D G3DSA:3.30.450.20 197 311 2.4E-8 T 18-10-2018 RU84_04820 aae544498360ba6194f5bf374042d6a8 478 Pfam PF13188 PAS domain 200 262 0.072 T 18-10-2018 IPR000014 PAS domain RU84_04820 aae544498360ba6194f5bf374042d6a8 478 Pfam PF00990 Diguanylate cyclase, GGDEF domain 323 470 2.2E-33 T 18-10-2018 IPR000160 GGDEF domain RU84_04820 aae544498360ba6194f5bf374042d6a8 478 SMART SM00267 311 474 8.4E-35 T 18-10-2018 IPR000160 GGDEF domain RU84_04820 aae544498360ba6194f5bf374042d6a8 478 Pfam PF13426 PAS domain 53 149 0.001 T 18-10-2018 IPR000014 PAS domain RU84_17845 5d8cb99020757d222f44f0d35cebc0be 696 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 58 696 2.5E-106 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_17845 5d8cb99020757d222f44f0d35cebc0be 696 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 159 4.3E-13 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_17845 5d8cb99020757d222f44f0d35cebc0be 696 Gene3D G3DSA:2.170.130.10 39 169 1.2E-24 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_17845 5d8cb99020757d222f44f0d35cebc0be 696 SUPERFAMILY SSF56935 24 696 3.66E-127 T 18-10-2018 RU84_17845 5d8cb99020757d222f44f0d35cebc0be 696 Gene3D G3DSA:2.40.170.20 170 696 6.7E-120 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_17845 5d8cb99020757d222f44f0d35cebc0be 696 Pfam PF00593 TonB dependent receptor 231 695 1.6E-59 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_15785 d423f6370e437ff84c08ec8ed1ca623f 468 Gene3D G3DSA:1.20.1600.10 59 460 3.1E-106 T 18-10-2018 RU84_15785 d423f6370e437ff84c08ec8ed1ca623f 468 Pfam PF02321 Outer membrane efflux protein 68 251 1.7E-20 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_15785 d423f6370e437ff84c08ec8ed1ca623f 468 Pfam PF02321 Outer membrane efflux protein 281 459 2.6E-25 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_15785 d423f6370e437ff84c08ec8ed1ca623f 468 SUPERFAMILY SSF56954 3 461 5.62E-92 T 18-10-2018 RU84_15785 d423f6370e437ff84c08ec8ed1ca623f 468 Gene3D G3DSA:2.20.200.10 105 350 3.1E-106 T 18-10-2018 RU84_15785 d423f6370e437ff84c08ec8ed1ca623f 468 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 460 2.0E-86 T 18-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Gene3D G3DSA:2.40.30.10 300 412 1.8E-44 T 18-10-2018 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SUPERFAMILY SSF54980 409 486 4.32E-25 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SUPERFAMILY SSF54211 489 609 1.11E-41 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SMART SM00838 610 698 8.3E-57 T 18-10-2018 IPR000640 Elongation factor EFG, domain V-like RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 1.2E-64 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SMART SM00889 487 608 3.6E-62 T 18-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 2.1E-29 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Gene3D G3DSA:3.30.230.10 491 697 1.4E-86 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 112.204 T 18-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Pfam PF00679 Elongation factor G C-terminus 610 696 2.8E-31 T 18-10-2018 IPR000640 Elongation factor EFG, domain V-like RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 18-10-2018 IPR031157 Tr-type G domain, conserved site RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Gene3D G3DSA:3.30.70.870 413 487 6.8E-33 T 18-10-2018 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Pfam PF03764 Elongation factor G, domain IV 486 607 2.8E-41 T 18-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Gene3D G3DSA:3.40.50.300 1 299 4.1E-111 T 18-10-2018 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Pfam PF03144 Elongation factor Tu domain 2 331 398 2.7E-18 T 18-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Pfam PF14492 Elongation Factor G, domain II 411 485 6.9E-35 T 18-10-2018 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 702 0.0 T 18-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SUPERFAMILY SSF54980 613 701 1.01E-29 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 PRINTS PR00315 GTP-binding elongation factor signature 85 95 5.0E-15 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 PRINTS PR00315 GTP-binding elongation factor signature 137 146 5.0E-15 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 PRINTS PR00315 GTP-binding elongation factor signature 12 25 5.0E-15 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 PRINTS PR00315 GTP-binding elongation factor signature 101 112 5.0E-15 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.0E-15 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SUPERFAMILY SSF50447 271 411 1.15E-35 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 Gene3D G3DSA:3.30.70.240 614 685 1.4E-86 T 18-10-2018 RU84_13875 74df3ae35285fd138e4873854bbc11cb 712 SUPERFAMILY SSF52540 6 288 6.12E-105 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06010 ff9f00962ee060788a08806599adc4aa 478 SUPERFAMILY SSF48452 299 455 6.07E-7 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06010 ff9f00962ee060788a08806599adc4aa 478 Gene3D G3DSA:3.30.2010.10 67 147 1.4E-7 T 18-10-2018 RU84_06010 ff9f00962ee060788a08806599adc4aa 478 Pfam PF01435 Peptidase family M48 77 256 6.4E-32 T 18-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RU84_06010 ff9f00962ee060788a08806599adc4aa 478 Gene3D G3DSA:1.25.40.10 250 476 8.0E-10 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06010 ff9f00962ee060788a08806599adc4aa 478 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 7 476 35.56 T 18-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 RU84_10645 0cd399a035afb132ea31156d38213064 220 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.6E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10645 0cd399a035afb132ea31156d38213064 220 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.6E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10645 0cd399a035afb132ea31156d38213064 220 SMART SM00895 84 209 3.6E-7 T 18-10-2018 IPR011711 GntR, C-terminal RU84_10645 0cd399a035afb132ea31156d38213064 220 Pfam PF07729 FCD domain 84 208 1.2E-16 T 18-10-2018 IPR011711 GntR, C-terminal RU84_10645 0cd399a035afb132ea31156d38213064 220 Gene3D G3DSA:1.10.10.10 3 75 1.1E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10645 0cd399a035afb132ea31156d38213064 220 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 71 1.4E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10645 0cd399a035afb132ea31156d38213064 220 SMART SM00345 16 74 3.0E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10645 0cd399a035afb132ea31156d38213064 220 SUPERFAMILY SSF48008 84 214 3.4E-13 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_10645 0cd399a035afb132ea31156d38213064 220 SUPERFAMILY SSF46785 8 78 3.56E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10645 0cd399a035afb132ea31156d38213064 220 Gene3D G3DSA:1.20.120.530 80 215 2.8E-17 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_09085 3d9f4f61b9832b8d9a1c870325b1995a 154 PIRSF PIRSF006181 1 154 7.9E-58 T 18-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RU84_09085 3d9f4f61b9832b8d9a1c870325b1995a 154 Gene3D G3DSA:3.90.960.10 1 154 2.2E-59 T 18-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RU84_09085 3d9f4f61b9832b8d9a1c870325b1995a 154 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 152 2.5E-58 T 18-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC RU84_09085 3d9f4f61b9832b8d9a1c870325b1995a 154 SUPERFAMILY SSF55826 2 152 1.57E-45 T 18-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 RU84_09085 3d9f4f61b9832b8d9a1c870325b1995a 154 Pfam PF04073 Aminoacyl-tRNA editing domain 32 143 3.6E-27 T 18-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 RU84_09810 bce21cabb6ef3553f9cff0a400ba9153 276 Pfam PF03180 NLPA lipoprotein 37 265 8.1E-73 T 18-10-2018 IPR004872 Lipoprotein NlpA family RU84_09810 bce21cabb6ef3553f9cff0a400ba9153 276 SUPERFAMILY SSF53850 37 273 1.38E-67 T 18-10-2018 RU84_09810 bce21cabb6ef3553f9cff0a400ba9153 276 Gene3D G3DSA:3.40.190.10 44 264 9.3E-72 T 18-10-2018 RU84_09810 bce21cabb6ef3553f9cff0a400ba9153 276 Gene3D G3DSA:3.40.190.10 117 222 9.3E-72 T 18-10-2018 RU84_09315 d66cf5f0a4ee69c8de0430451f5b1daf 303 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 138 286 3.0E-54 T 18-10-2018 IPR005642 Lysine exporter LysO RU84_09315 d66cf5f0a4ee69c8de0430451f5b1daf 303 Pfam PF03956 Lysine exporter LysO 116 301 2.0E-50 T 18-10-2018 IPR005642 Lysine exporter LysO RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 Pfam PF02803 Thiolase, C-terminal domain 265 389 3.7E-47 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 SUPERFAMILY SSF53901 266 389 5.47E-44 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 ProSitePatterns PS00099 Thiolases active site. 371 384 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 Pfam PF00108 Thiolase, N-terminal domain 9 257 4.5E-73 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 6 390 62.075 T 18-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 Gene3D G3DSA:3.40.47.10 9 271 1.1E-142 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 ProSitePatterns PS00737 Thiolases signature 2. 336 352 - T 18-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 388 7.3E-130 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 8 390 4.8E-192 T 18-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 SUPERFAMILY SSF53901 5 262 2.47E-73 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 Gene3D G3DSA:3.40.47.10 138 384 1.1E-142 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_16875 cfd3f901b1f90d4adbc0d3cc271fa753 390 PIRSF PIRSF000429 3 390 1.8E-124 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_13130 47904ad1530b7bae1857a8173d9abbf1 292 PIRSF PIRSF037505 1 291 5.1E-9 T 18-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 RU84_13130 47904ad1530b7bae1857a8173d9abbf1 292 SUPERFAMILY SSF82282 2 291 3.14E-75 T 18-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RU84_13130 47904ad1530b7bae1857a8173d9abbf1 292 Gene3D G3DSA:3.20.20.330 1 292 2.7E-67 T 18-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RU84_13130 47904ad1530b7bae1857a8173d9abbf1 292 Pfam PF02574 Homocysteine S-methyltransferase 3 288 2.5E-56 T 18-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RU84_12520 7bfe04eeee5f7a5d1ddac7a8ff081ee0 118 SUPERFAMILY SSF47413 9 89 2.61E-13 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_03140 777c3346c94da4d168480bb8d5d5b972 213 SUPERFAMILY SSF52833 3 209 6.23E-69 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_03140 777c3346c94da4d168480bb8d5d5b972 213 Pfam PF00578 AhpC/TSA family 6 135 9.0E-31 T 18-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_03140 777c3346c94da4d168480bb8d5d5b972 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 196 2.7E-13 T 18-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_03140 777c3346c94da4d168480bb8d5d5b972 213 Gene3D G3DSA:3.40.30.10 1 145 5.2E-50 T 18-10-2018 RU84_03140 777c3346c94da4d168480bb8d5d5b972 213 Gene3D G3DSA:3.30.1020.10 146 210 4.3E-28 T 18-10-2018 RU84_03140 777c3346c94da4d168480bb8d5d5b972 213 PIRSF PIRSF000239 1 209 1.1E-78 T 18-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_11270 202d19af3b39987123dee38c13f5626a 95 Pfam PF06099 Phenol hydroxylase subunit 3 58 6.3E-21 T 18-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 RU84_11270 202d19af3b39987123dee38c13f5626a 95 ProDom PD468738 PHENOL HYDROXYLASE COMPONENT SUBUNIT PHENOLHYDROXYLASE MONOOXYGENASE TOMA0 P0 HYDROCARBONS IRON 4 50 3.0E-21 T 18-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 RU84_11270 202d19af3b39987123dee38c13f5626a 95 PIRSF PIRSF000039 1 93 1.5E-33 T 18-10-2018 IPR010353 Phenol hydroxylase subunit KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 Pfam PF00551 Formyl transferase 2 184 2.7E-47 T 18-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 SUPERFAMILY SSF50486 214 319 2.83E-27 T 18-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 Gene3D G3DSA:3.10.25.10 214 318 4.4E-28 T 18-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 SUPERFAMILY SSF53328 1 188 1.24E-61 T 18-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 Pfam PF02911 Formyl transferase, C-terminal domain 211 310 5.1E-24 T 18-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 314 35.112 T 18-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 Gene3D G3DSA:3.40.50.170 1 213 1.1E-76 T 18-10-2018 RU84_00130 ac347b50ab1d917b3f4a4232a73cc1e5 320 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 313 7.0E-96 T 18-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 Gene3D G3DSA:2.70.98.90 81 373 3.0E-100 T 18-10-2018 IPR038221 YidC, periplasmic domain superfamily RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR01900 YidC translocation/secretion protein signature 508 523 8.5E-24 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR01900 YidC translocation/secretion protein signature 527 551 8.5E-24 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR01900 YidC translocation/secretion protein signature 379 395 8.5E-24 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 Pfam PF02096 60Kd inner membrane protein 394 572 1.4E-60 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 393 572 7.7E-71 T 18-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 392 6.2E-104 T 18-10-2018 IPR028053 Membrane insertase YidC, N-terminal RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 Pfam PF14849 YidC periplasmic domain 85 381 5.4E-70 T 18-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 249 267 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 455 478 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 502 524 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 364 384 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 538 561 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 3 24 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 90 111 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 PRINTS PR00701 60kDa inner membrane protein signature 282 297 3.6E-68 T 18-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 RU84_18400 196f1c274ad878bc006dcfe636d5a074 586 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 574 23.236 T 18-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 SUPERFAMILY SSF49998 335 756 3.79E-139 T 18-10-2018 IPR036460 Copper amine oxidase, catalytic domain superfamily GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 SUPERFAMILY SSF55383 40 118 3.27E-9 T 18-10-2018 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Pfam PF07833 Copper amine oxidase N-terminal domain 40 113 1.1E-6 T 18-10-2018 IPR012854 Copper amine oxidase-like, N-terminal RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Gene3D G3DSA:3.30.457.10 39 117 3.5E-21 T 18-10-2018 IPR036582 Copper amine oxidase-like, N-terminal domain superfamily RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 ProSitePatterns PS01164 Copper amine oxidase topaquinone signature. 489 502 - T 18-10-2018 IPR000269 Copper amine oxidase GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Gene3D G3DSA:3.10.450.40 119 219 5.8E-33 T 18-10-2018 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 ProSitePatterns PS01165 Copper amine oxidase copper-binding site signature. 718 731 - T 18-10-2018 IPR000269 Copper amine oxidase GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Gene3D G3DSA:3.10.450.40 220 325 2.0E-29 T 18-10-2018 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Pfam PF01179 Copper amine oxidase, enzyme domain 339 756 2.7E-126 T 18-10-2018 IPR015798 Copper amine oxidase, catalytic domain GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 SUPERFAMILY SSF54416 219 329 5.23E-26 T 18-10-2018 IPR016182 Copper amine oxidase, N-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Gene3D G3DSA:2.70.98.20 347 756 1.4E-155 T 18-10-2018 IPR036460 Copper amine oxidase, catalytic domain superfamily GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Pfam PF02728 Copper amine oxidase, N3 domain 219 320 8.6E-22 T 18-10-2018 IPR015802 Copper amine oxidase, N3-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 KEGG: 00260+1.4.3.21|KEGG: 00350+1.4.3.21|KEGG: 00360+1.4.3.21|KEGG: 00410+1.4.3.21|KEGG: 00950+1.4.3.21|KEGG: 00960+1.4.3.21|MetaCyc: PWY-5751|Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 Pfam PF02727 Copper amine oxidase, N2 domain 127 211 2.6E-12 T 18-10-2018 IPR015800 Copper amine oxidase, N2-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 KEGG: 00260+1.4.3.21|KEGG: 00350+1.4.3.21|KEGG: 00360+1.4.3.21|KEGG: 00410+1.4.3.21|KEGG: 00950+1.4.3.21|KEGG: 00960+1.4.3.21|MetaCyc: PWY-5751|Reactome: R-HSA-211945 RU84_08090 26d70dd8493d8afc3c5991131cc703b9 768 SUPERFAMILY SSF54416 126 215 6.87E-18 T 18-10-2018 IPR016182 Copper amine oxidase, N-terminal GO:0005507|GO:0008131|GO:0009308|GO:0048038|GO:0055114 Reactome: R-HSA-211945 RU84_09620 2e0c6513e9e5420b3e6861c397e9dc79 186 Pfam PF04186 FxsA cytoplasmic membrane protein 6 113 1.3E-22 T 18-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 RU84_17105 a1b00c636c5b473c5d1225172289baef 240 PIRSF PIRSF003107 9 230 5.6E-64 T 18-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RU84_17105 a1b00c636c5b473c5d1225172289baef 240 Gene3D G3DSA:1.20.58.220 122 234 2.8E-32 T 18-10-2018 IPR038078 PhoU-like domain superfamily RU84_17105 a1b00c636c5b473c5d1225172289baef 240 SUPERFAMILY SSF109755 14 234 3.56E-64 T 18-10-2018 RU84_17105 a1b00c636c5b473c5d1225172289baef 240 Pfam PF01895 PhoU domain 29 114 3.5E-16 T 18-10-2018 IPR026022 PhoU domain RU84_17105 a1b00c636c5b473c5d1225172289baef 240 Pfam PF01895 PhoU domain 132 216 5.2E-16 T 18-10-2018 IPR026022 PhoU domain RU84_17105 a1b00c636c5b473c5d1225172289baef 240 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 14 222 2.7E-64 T 18-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 RU84_17105 a1b00c636c5b473c5d1225172289baef 240 Gene3D G3DSA:1.20.58.220 4 121 2.8E-38 T 18-10-2018 IPR038078 PhoU-like domain superfamily RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Gene3D G3DSA:3.30.70.3380 377 487 2.0E-38 T 18-10-2018 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 SUPERFAMILY SSF54980 301 379 9.71E-18 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 SUPERFAMILY SSF54980 408 502 1.1E-25 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 SMART SM00838 407 492 0.0023 T 18-10-2018 IPR000640 Elongation factor EFG, domain V-like RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.4E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 PRINTS PR00315 GTP-binding elongation factor signature 15 28 1.4E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.4E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.4E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Pfam PF00679 Elongation factor G C-terminus 408 493 4.6E-21 T 18-10-2018 IPR000640 Elongation factor EFG, domain V-like RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Pfam PF00009 Elongation factor Tu GTP binding domain 11 190 2.3E-51 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 18-10-2018 IPR031157 Tr-type G domain, conserved site RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 TIGRFAM TIGR01393 lepA: elongation factor 4 11 604 1.1E-287 T 18-10-2018 IPR006297 Elongation factor 4 GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Gene3D G3DSA:3.30.70.2570 488 562 1.4E-32 T 18-10-2018 IPR038363 LepA, C-terminal domain superfamily RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Pfam PF06421 GTP-binding protein LepA C-terminus 496 602 8.0E-50 T 18-10-2018 IPR013842 GTP-binding protein LepA, C-terminal RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Gene3D G3DSA:3.30.70.870 295 376 4.0E-34 T 18-10-2018 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Gene3D G3DSA:3.40.50.300 8 194 2.2E-68 T 18-10-2018 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Pfam PF03144 Elongation factor Tu domain 2 214 284 1.2E-10 T 18-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Gene3D G3DSA:2.40.30.10 195 293 4.0E-32 T 18-10-2018 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 180 8.1E-18 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 Hamap MF_00071 Elongation factor 4 [lepA]. 1 605 291.116 T 18-10-2018 IPR006297 Elongation factor 4 GO:0005525 RU84_04730 b3664ca1a3ed997e347d28ef6d05ff86 605 SUPERFAMILY SSF52540 6 237 9.5E-55 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 Gene3D G3DSA:3.30.1300.10 178 282 1.4E-28 T 18-10-2018 RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 Hamap MF_00158 Pantothenate synthetase [panC]. 2 277 40.718 T 18-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 SUPERFAMILY SSF52374 1 278 4.56E-106 T 18-10-2018 RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 277 1.1E-98 T 18-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 Gene3D G3DSA:3.40.50.620 1 177 6.7E-76 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 Pfam PF02569 Pantoate-beta-alanine ligase 5 275 3.1E-104 T 18-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 RU84_15360 4c259be8d971d06c09d33a76e5848c22 282 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 68 1.1E-9 T 18-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Pfam PF02824 TGS domain 4 61 3.4E-10 T 18-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Gene3D G3DSA:3.30.54.20 130 186 6.3E-61 T 18-10-2018 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 SUPERFAMILY SSF55681 242 525 1.42E-97 T 18-10-2018 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Pfam PF03129 Anticodon binding domain 540 629 5.1E-19 T 18-10-2018 IPR004154 Anticodon-binding RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 218 4.6E-14 T 18-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Gene3D G3DSA:3.30.980.10 69 221 6.3E-61 T 18-10-2018 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Gene3D G3DSA:3.40.50.800 531 637 1.3E-28 T 18-10-2018 IPR036621 Anticodon-binding domain superfamily RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.41 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 4.7E-52 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 4.7E-52 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 4.7E-52 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 4.7E-52 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 4.7E-52 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 SMART SM00863 169 218 1.8E-20 T 18-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 SUPERFAMILY SSF52954 528 632 1.66E-29 T 18-10-2018 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Gene3D G3DSA:3.10.20.30 3 63 5.8E-21 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_15335 71f5420aed1132ee862105cc398a3d08 640 SUPERFAMILY SSF55186 63 240 1.26E-64 T 18-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Gene3D G3DSA:3.30.930.10 222 530 7.2E-129 T 18-10-2018 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 6.7E-223 T 18-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 SUPERFAMILY SSF81271 3 61 4.58E-15 T 18-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RU84_15335 71f5420aed1132ee862105cc398a3d08 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 528 1.0E-45 T 18-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_18010 e44abfeb3594e9730279672b418e46d4 299 TIGRFAM TIGR03585 PseH: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 8 158 5.3E-45 T 18-10-2018 IPR020036 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase RU84_18010 e44abfeb3594e9730279672b418e46d4 299 Pfam PF13420 Acetyltransferase (GNAT) domain 6 154 2.9E-15 T 18-10-2018 RU84_18010 e44abfeb3594e9730279672b418e46d4 299 Pfam PF01575 MaoC like domain 185 270 3.3E-15 T 18-10-2018 IPR002539 MaoC-like dehydratase domain RU84_18010 e44abfeb3594e9730279672b418e46d4 299 Gene3D G3DSA:3.40.630.30 2 167 9.7E-45 T 18-10-2018 RU84_18010 e44abfeb3594e9730279672b418e46d4 299 SUPERFAMILY SSF54637 177 297 7.29E-21 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_18010 e44abfeb3594e9730279672b418e46d4 299 SUPERFAMILY SSF55729 6 160 7.88E-29 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_18010 e44abfeb3594e9730279672b418e46d4 299 Gene3D G3DSA:3.10.129.10 168 299 5.2E-25 T 18-10-2018 RU84_01985 1a8f8f8beffc62bbe615eeaf03077700 254 Pfam PF00042 Globin 5 101 2.5E-9 T 18-10-2018 IPR000971 Globin GO:0020037 RU84_01985 1a8f8f8beffc62bbe615eeaf03077700 254 SUPERFAMILY SSF46458 1 142 1.06E-35 T 18-10-2018 IPR009050 Globin-like superfamily RU84_01985 1a8f8f8beffc62bbe615eeaf03077700 254 SUPERFAMILY SSF63380 150 251 4.68E-10 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_01985 1a8f8f8beffc62bbe615eeaf03077700 254 Gene3D G3DSA:2.40.30.10 150 253 9.1E-14 T 18-10-2018 RU84_01985 1a8f8f8beffc62bbe615eeaf03077700 254 Gene3D G3DSA:1.10.490.10 1 149 6.5E-49 T 18-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 33.858 T 18-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 Pfam PF00230 Major intrinsic protein 2 221 1.5E-50 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 ProSitePatterns PS00221 MIP family signature. 60 68 - T 18-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 SUPERFAMILY SSF81338 2 225 2.62E-66 T 18-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 PRINTS PR00783 Major intrinsic protein family signature 135 153 2.6E-52 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 PRINTS PR00783 Major intrinsic protein family signature 42 66 2.6E-52 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 PRINTS PR00783 Major intrinsic protein family signature 165 187 2.6E-52 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 PRINTS PR00783 Major intrinsic protein family signature 79 98 2.6E-52 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 PRINTS PR00783 Major intrinsic protein family signature 204 224 2.6E-52 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 PRINTS PR00783 Major intrinsic protein family signature 2 21 2.6E-52 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 4.7E-58 T 18-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 RU84_01155 103531040fb20db9010d4fbfd9d6f67f 229 Gene3D G3DSA:1.20.1080.10 1 228 1.3E-82 T 18-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RU84_00890 370199cc698851a2f8bd09966492355e 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.4E-11 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_00890 370199cc698851a2f8bd09966492355e 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.4E-11 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_00890 370199cc698851a2f8bd09966492355e 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.4E-11 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_00890 370199cc698851a2f8bd09966492355e 216 SMART SM00448 1 115 6.6E-26 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_00890 370199cc698851a2f8bd09966492355e 216 SMART SM00421 149 206 4.1E-22 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_00890 370199cc698851a2f8bd09966492355e 216 Pfam PF00072 Response regulator receiver domain 3 115 2.6E-24 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_00890 370199cc698851a2f8bd09966492355e 216 Gene3D G3DSA:3.40.50.12740 1 210 9.1E-55 T 18-10-2018 RU84_00890 370199cc698851a2f8bd09966492355e 216 SUPERFAMILY SSF52172 1 130 5.27E-30 T 18-10-2018 IPR011006 CheY-like superfamily RU84_00890 370199cc698851a2f8bd09966492355e 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_00890 370199cc698851a2f8bd09966492355e 216 SUPERFAMILY SSF46894 143 210 2.07E-20 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_00890 370199cc698851a2f8bd09966492355e 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.2E-19 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_09650 fc2bbcf551a977deb0f022df393439db 362 SUPERFAMILY SSF46548 148 265 1.2E-16 T 18-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RU84_09650 fc2bbcf551a977deb0f022df393439db 362 Pfam PF08331 Domain of unknown function (DUF1730) 71 149 8.1E-24 T 18-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 RU84_09650 fc2bbcf551a977deb0f022df393439db 362 Pfam PF13484 4Fe-4S double cluster binding domain 201 265 5.2E-20 T 18-10-2018 RU84_09650 fc2bbcf551a977deb0f022df393439db 362 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 202 213 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_09650 fc2bbcf551a977deb0f022df393439db 362 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 23 358 1.2E-140 T 18-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 RU84_09650 fc2bbcf551a977deb0f022df393439db 362 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 16 324 45.765 T 18-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 Gene3D G3DSA:1.10.530.10 91 343 1.1E-80 T 18-10-2018 RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 Pfam PF01471 Putative peptidoglycan binding domain 365 419 1.0E-10 T 18-10-2018 IPR002477 Peptidoglycan binding-like RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 SUPERFAMILY SSF53955 46 351 5.25E-96 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 Pfam PF13406 Transglycosylase SLT domain 49 344 4.9E-104 T 18-10-2018 IPR031304 Transglycosylase SLT domain 2 RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 Gene3D G3DSA:1.10.8.350 64 224 1.1E-80 T 18-10-2018 RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 SUPERFAMILY SSF47090 351 422 1.43E-16 T 18-10-2018 IPR036365 PGBD-like superfamily RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 Gene3D G3DSA:1.10.101.10 351 424 8.0E-10 T 18-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RU84_18300 58c62cfc20d63c79b218aa36864bdb0d 430 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 48 347 4.8E-109 T 18-10-2018 IPR011970 Lytic murein transglycosylase RU84_11445 a2d25916557718d595206a8bdb62de96 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 706 720 5.7E-43 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_11445 a2d25916557718d595206a8bdb62de96 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 644 662 5.7E-43 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_11445 a2d25916557718d595206a8bdb62de96 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 5.7E-43 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_11445 a2d25916557718d595206a8bdb62de96 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 617 5.7E-43 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_11445 a2d25916557718d595206a8bdb62de96 859 SMART SM00382 195 340 5.9E-12 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_11445 a2d25916557718d595206a8bdb62de96 859 SMART SM00382 595 745 4.2E-12 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_11445 a2d25916557718d595206a8bdb62de96 859 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 629 647 - T 18-10-2018 IPR028299 ClpA/B, conserved site 2 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Pfam PF07724 AAA domain (Cdc48 subfamily) 594 757 6.2E-56 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Gene3D G3DSA:1.10.8.60 764 857 2.7E-27 T 18-10-2018 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Gene3D G3DSA:3.40.50.300 145 339 2.4E-74 T 18-10-2018 RU84_11445 a2d25916557718d595206a8bdb62de96 859 SUPERFAMILY SSF52540 544 851 3.61E-81 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11445 a2d25916557718d595206a8bdb62de96 859 SMART SM01086 764 853 4.1E-36 T 18-10-2018 IPR019489 Clp ATPase, C-terminal RU84_11445 a2d25916557718d595206a8bdb62de96 859 Gene3D G3DSA:1.10.1780.10 1 144 9.3E-29 T 18-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RU84_11445 a2d25916557718d595206a8bdb62de96 859 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 291 303 - T 18-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 142 6.1E-11 T 18-10-2018 IPR004176 Clp, N-terminal RU84_11445 a2d25916557718d595206a8bdb62de96 859 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 66 7.7E-5 T 18-10-2018 IPR004176 Clp, N-terminal RU84_11445 a2d25916557718d595206a8bdb62de96 859 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 843 1.2E-25 T 18-10-2018 IPR019489 Clp ATPase, C-terminal RU84_11445 a2d25916557718d595206a8bdb62de96 859 SUPERFAMILY SSF81923 4 153 8.04E-35 T 18-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Gene3D G3DSA:3.40.50.300 340 542 9.9E-66 T 18-10-2018 RU84_11445 a2d25916557718d595206a8bdb62de96 859 SUPERFAMILY SSF52540 157 543 7.56E-98 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11445 a2d25916557718d595206a8bdb62de96 859 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 18-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Gene3D G3DSA:3.40.50.300 548 762 8.8E-89 T 18-10-2018 RU84_11445 a2d25916557718d595206a8bdb62de96 859 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 200 331 1.8E-13 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_05155 19b296b3a0f0e9b9bb073914bec02df2 244 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 20 230 4.0E-106 T 18-10-2018 RU84_05155 19b296b3a0f0e9b9bb073914bec02df2 244 Gene3D G3DSA:1.10.3890.10 12 243 1.8E-59 T 18-10-2018 IPR035932 HflD-like superfamily RU84_05155 19b296b3a0f0e9b9bb073914bec02df2 244 Pfam PF04356 Protein of unknown function (DUF489) 17 231 1.9E-54 T 18-10-2018 IPR007451 High frequency lysogenization protein HflD RU84_05155 19b296b3a0f0e9b9bb073914bec02df2 244 SUPERFAMILY SSF101322 13 237 9.81E-52 T 18-10-2018 IPR035932 HflD-like superfamily RU84_05155 19b296b3a0f0e9b9bb073914bec02df2 244 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 11 238 27.167 T 18-10-2018 IPR007451 High frequency lysogenization protein HflD RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 426 436 - T 18-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 Pfam PF03853 YjeF-related protein N-terminus 27 185 7.8E-32 T 18-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 PIRSF PIRSF017184 3 486 6.0E-104 T 18-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 SUPERFAMILY SSF53613 220 485 5.45E-60 T 18-10-2018 IPR029056 Ribokinase-like RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 222 486 3.5E-57 T 18-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 Gene3D G3DSA:3.40.1190.20 220 486 2.1E-70 T 18-10-2018 IPR029056 Ribokinase-like RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 Gene3D G3DSA:3.40.50.10260 2 210 1.2E-47 T 18-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 215 485 19.185 T 18-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 SUPERFAMILY SSF64153 5 237 7.32E-50 T 18-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 Pfam PF01256 Carbohydrate kinase 238 481 7.0E-48 T 18-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 RU84_09645 3db2d7ff70c8ce4c55d7e7caeacd834b 486 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 10 201 1.0E-33 T 18-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 SMART SM00448 1 111 4.8E-34 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 SMART SM00850 147 244 1.5E-27 T 18-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 Gene3D G3DSA:3.40.50.2300 1 124 2.1E-39 T 18-10-2018 RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 Gene3D G3DSA:2.40.50.40 138 206 3.5E-11 T 18-10-2018 RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 SUPERFAMILY SSF52172 1 167 5.83E-37 T 18-10-2018 IPR011006 CheY-like superfamily RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 Pfam PF00072 Response regulator receiver domain 3 110 9.8E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17085 c73d05a7209d0eac7abe150d832890b0 246 Pfam PF04397 LytTr DNA-binding domain 150 243 2.5E-23 T 18-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 RU84_09695 8e84a760efc2d2bb25be134f5aa50c96 283 Gene3D G3DSA:3.40.190.290 92 277 1.5E-28 T 18-10-2018 RU84_09695 8e84a760efc2d2bb25be134f5aa50c96 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.2E-13 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_09695 8e84a760efc2d2bb25be134f5aa50c96 283 SUPERFAMILY SSF53850 88 281 1.1E-28 T 18-10-2018 RU84_09695 8e84a760efc2d2bb25be134f5aa50c96 283 SUPERFAMILY SSF46785 1 112 2.9E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09695 8e84a760efc2d2bb25be134f5aa50c96 283 Pfam PF03466 LysR substrate binding domain 88 275 4.1E-25 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_09695 8e84a760efc2d2bb25be134f5aa50c96 283 Gene3D G3DSA:1.10.10.10 2 91 6.5E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 Gene3D G3DSA:1.10.3080.10 14 403 8.2E-53 T 18-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 Pfam PF00654 Voltage gated chloride channel 62 394 1.7E-58 T 18-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 SUPERFAMILY SSF81340 8 400 2.22E-74 T 18-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 PRINTS PR00762 Chloride channel signature 317 337 1.3E-9 T 18-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 PRINTS PR00762 Chloride channel signature 153 172 1.3E-9 T 18-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 PRINTS PR00762 Chloride channel signature 345 361 1.3E-9 T 18-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RU84_10870 acd0cd750f3b4084db03a3327f74892c 406 PRINTS PR00762 Chloride channel signature 102 121 1.3E-9 T 18-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 SUPERFAMILY SSF47203 257 400 3.72E-8 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 PIRSF PIRSF016578 30 108 9.1E-7 T 18-10-2018 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 PIRSF PIRSF016578 165 408 2.9E-15 T 18-10-2018 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 57 143 1.1E-4 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 Gene3D G3DSA:1.10.540.10 32 146 2.6E-15 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 Gene3D G3DSA:1.20.140.10 246 425 2.4E-50 T 18-10-2018 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 SUPERFAMILY SSF56645 48 247 5.37E-37 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 262 399 3.6E-11 T 18-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RU84_10055 dfd9bedc8445ddc48caf3adbe7467fdd 431 Gene3D G3DSA:2.40.110.10 147 245 3.2E-26 T 18-10-2018 RU84_08185 3a4d08f04491832eb9a5c93b5ead2f86 412 Gene3D G3DSA:3.20.20.70 1 355 7.0E-114 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_08185 3a4d08f04491832eb9a5c93b5ead2f86 412 SUPERFAMILY SSF51395 11 344 1.01E-103 T 18-10-2018 RU84_08185 3a4d08f04491832eb9a5c93b5ead2f86 412 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 14 341 1.9E-57 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_04645 699fdffc736e02dbe954de44dc073b89 223 SUPERFAMILY SSF52402 4 222 1.85E-65 T 18-10-2018 RU84_04645 699fdffc736e02dbe954de44dc073b89 223 Gene3D G3DSA:3.40.50.620 3 218 2.4E-73 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_04645 699fdffc736e02dbe954de44dc073b89 223 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 5 205 7.8E-63 T 18-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RU84_04645 699fdffc736e02dbe954de44dc073b89 223 PIRSF PIRSF006293 1 223 2.1E-77 T 18-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RU84_04645 699fdffc736e02dbe954de44dc073b89 223 Pfam PF06508 Queuosine biosynthesis protein QueC 4 212 1.2E-76 T 18-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RU84_04645 699fdffc736e02dbe954de44dc073b89 223 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 3 218 54.364 T 18-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 RU84_18135 c6fc33aa6a0102e1cf28ab5f58ca9b9e 136 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 78 131 2.0E-18 T 18-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB RU84_18135 c6fc33aa6a0102e1cf28ab5f58ca9b9e 136 Gene3D G3DSA:3.10.450.160 56 135 8.6E-14 T 18-10-2018 RU84_18135 c6fc33aa6a0102e1cf28ab5f58ca9b9e 136 Pfam PF11776 Nickel/cobalt transporter regulator 83 132 2.3E-16 T 18-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB RU84_01520 123522def11afa079a7e54a3b0668087 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 5.5E-63 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 SUPERFAMILY SSF47240 1 154 1.07E-45 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_01520 123522def11afa079a7e54a3b0668087 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PIRSF PIRSF002560 1 154 1.4E-62 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 Pfam PF00210 Ferritin-like domain 8 141 8.4E-34 T 18-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 107 127 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 65 85 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 PRINTS PR00601 Bacterioferritin signature 86 106 1.6E-57 T 18-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 RU84_01520 123522def11afa079a7e54a3b0668087 154 Gene3D G3DSA:1.20.1260.10 1 154 5.6E-59 T 18-10-2018 IPR012347 Ferritin-like RU84_06935 e06627ca5b8f35bfe0f447b7ca7f1844 176 SMART SM00972 116 173 3.6E-19 T 18-10-2018 IPR007893 Spore coat protein U RU84_06935 e06627ca5b8f35bfe0f447b7ca7f1844 176 Pfam PF05229 Spore Coat Protein U domain 27 173 1.3E-28 T 18-10-2018 IPR007893 Spore coat protein U RU84_17740 c368d8191f3b841a67c95fe994b90a04 86 Pfam PF00550 Phosphopantetheine attachment site 12 76 2.2E-16 T 18-10-2018 IPR009081 Phosphopantetheine binding ACP domain RU84_17740 c368d8191f3b841a67c95fe994b90a04 86 SMART SM00823 Phosphopantetheine attachment site 9 80 2.6E-17 T 18-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RU84_17740 c368d8191f3b841a67c95fe994b90a04 86 Gene3D G3DSA:1.10.1200.10 1 86 3.3E-35 T 18-10-2018 IPR036736 ACP-like superfamily RU84_17740 c368d8191f3b841a67c95fe994b90a04 86 SMART SM01294 10 76 1.5E-7 T 18-10-2018 RU84_17740 c368d8191f3b841a67c95fe994b90a04 86 SUPERFAMILY SSF47336 8 81 2.88E-19 T 18-10-2018 IPR036736 ACP-like superfamily RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 Gene3D G3DSA:3.10.580.10 196 322 4.6E-45 T 18-10-2018 RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 PIRSF PIRSF004692 1 325 2.4E-134 T 18-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 Gene3D G3DSA:3.40.50.10490 5 195 5.0E-59 T 18-10-2018 RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 SUPERFAMILY SSF53697 14 322 8.45E-66 T 18-10-2018 RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 Pfam PF01380 SIS domain 41 172 4.7E-27 T 18-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 314 1.4E-106 T 18-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 SMART SM00116 210 258 0.036 T 18-10-2018 IPR000644 CBS domain RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 SMART SM00116 276 324 2.9E-5 T 18-10-2018 IPR000644 CBS domain RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 Pfam PF00571 CBS domain 269 322 1.4E-11 T 18-10-2018 IPR000644 CBS domain RU84_11105 e604a71e3a956f0ef335cb436a752ce2 325 Pfam PF00571 CBS domain 201 258 3.4E-6 T 18-10-2018 IPR000644 CBS domain RU84_01505 958a5cefe32680cf25ab1cbd7f846a88 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01505 958a5cefe32680cf25ab1cbd7f846a88 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 8.0E-11 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01505 958a5cefe32680cf25ab1cbd7f846a88 145 Gene3D G3DSA:3.30.700.10 7 143 2.5E-31 T 18-10-2018 RU84_01505 958a5cefe32680cf25ab1cbd7f846a88 145 Pfam PF00114 Pilin (bacterial filament) 35 142 6.8E-21 T 18-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 RU84_01505 958a5cefe32680cf25ab1cbd7f846a88 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 1.0E-10 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01505 958a5cefe32680cf25ab1cbd7f846a88 145 SUPERFAMILY SSF54523 7 143 1.36E-24 T 18-10-2018 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 Pfam PF00255 Glutathione peroxidase 4 110 2.6E-40 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 18-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 PRINTS PR01011 Glutathione peroxidase family signature 123 132 1.5E-21 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 PRINTS PR01011 Glutathione peroxidase family signature 57 73 1.5E-21 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 PRINTS PR01011 Glutathione peroxidase family signature 22 39 1.5E-21 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 Gene3D G3DSA:3.40.30.10 1 161 5.5E-70 T 18-10-2018 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 60 67 - T 18-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 PIRSF PIRSF000303 1 161 4.0E-66 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_09900 f3d10500994ce084f32baf66056fc20e 161 SUPERFAMILY SSF52833 3 159 1.07E-59 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 Pfam PF00330 Aconitase family (aconitate hydratase) 70 534 1.7E-144 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 864 0.0 T 18-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 162 170 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 281 294 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 205 220 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 403 414 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 267 280 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 191 204 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 360 374 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 465 478 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 PRINTS PR00415 Aconitase family signature 138 151 6.8E-27 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 SUPERFAMILY SSF53732 9 592 6.8E-186 T 18-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 Gene3D G3DSA:3.20.19.10 619 863 4.0E-84 T 18-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 Pfam PF00694 Aconitase C-terminal domain 657 788 5.0E-31 T 18-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 Gene3D G3DSA:3.30.499.10 361 562 2.8E-76 T 18-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 Gene3D G3DSA:3.30.499.20 4 360 1.9E-129 T 18-10-2018 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 Gene3D G3DSA:1.10.1440.20 563 618 4.0E-9 T 18-10-2018 RU84_17905 6c8951736ecb5960fb254fd1401710b3 868 SUPERFAMILY SSF52016 599 862 7.65E-68 T 18-10-2018 RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 SUPERFAMILY SSF56042 176 342 8.07E-63 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 169 2.6E-15 T 18-10-2018 IPR016188 PurM-like, N-terminal domain RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 Gene3D G3DSA:3.30.1330.10 11 175 7.5E-67 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 354 46.75 T 18-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 Gene3D G3DSA:3.90.650.10 176 347 2.8E-69 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 339 2.0E-145 T 18-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 SUPERFAMILY SSF55326 12 175 9.87E-52 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_04480 4dd0a2175073fc9dc015bc27983bc37e 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 181 342 8.4E-38 T 18-10-2018 IPR010918 PurM-like, C-terminal domain RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Gene3D G3DSA:3.40.50.300 217 379 2.2E-101 T 18-10-2018 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 SUPERFAMILY SSF116878 121 451 2.22E-49 T 18-10-2018 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Pfam PF01926 50S ribosome-binding GTPase 218 311 1.4E-23 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 218 370 1.5E-21 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 2.5E-36 T 18-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 4.5E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 286 304 4.5E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 SUPERFAMILY SSF52540 72 370 7.43E-43 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Pfam PF12631 MnmE helical domain 123 448 1.5E-55 T 18-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Gene3D G3DSA:3.30.1360.120 1 121 2.1E-40 T 18-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 451 32.325 T 18-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 451 4.8E-104 T 18-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 RU84_18395 c61fd1a61a157df2f988452a90aab98b 451 Gene3D G3DSA:1.20.120.430 122 451 2.2E-101 T 18-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 RU84_09000 e9a6425b9f615e2efd32b528bfb09788 199 Gene3D G3DSA:3.40.50.1240 4 198 4.9E-45 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_09000 e9a6425b9f615e2efd32b528bfb09788 199 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 8 194 4.0E-45 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_09000 e9a6425b9f615e2efd32b528bfb09788 199 SMART SM00855 5 160 3.1E-11 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_09000 e9a6425b9f615e2efd32b528bfb09788 199 PIRSF PIRSF000709 1 197 3.5E-11 T 18-10-2018 RU84_09000 e9a6425b9f615e2efd32b528bfb09788 199 SUPERFAMILY SSF53254 4 191 9.13E-47 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 4.9E-53 T 18-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.02 T 18-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 18-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 Gene3D G3DSA:1.10.8.50 1 71 4.6E-26 T 18-10-2018 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 Gene3D G3DSA:4.10.910.10 72 118 3.8E-27 T 18-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 SUPERFAMILY SSF46946 2 114 6.15E-45 T 18-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 PIRSF PIRSF002134 1 118 1.6E-40 T 18-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 Pfam PF00416 Ribosomal protein S13/S18 3 62 4.5E-14 T 18-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02120 518d680cf4dce407cb9d30c4f67efad9 118 Pfam PF00416 Ribosomal protein S13/S18 65 108 9.7E-17 T 18-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_16795 5b90df386760a68242cd9cafd15ff5fe 436 SMART SM00028 64 97 0.27 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_16795 5b90df386760a68242cd9cafd15ff5fe 436 SMART SM00028 30 63 120.0 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_16795 5b90df386760a68242cd9cafd15ff5fe 436 SUPERFAMILY SSF48452 42 121 1.1E-10 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_16795 5b90df386760a68242cd9cafd15ff5fe 436 Gene3D G3DSA:1.25.40.10 12 138 4.6E-12 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_17635 8adcde359c183a13000c40dd191e9c84 135 SUPERFAMILY SSF82784 16 132 7.33E-24 T 18-10-2018 IPR036102 OsmC/Ohr superfamily RU84_17635 8adcde359c183a13000c40dd191e9c84 135 Gene3D G3DSA:3.30.300.20 4 135 3.6E-25 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_17635 8adcde359c183a13000c40dd191e9c84 135 Pfam PF02566 OsmC-like protein 38 129 3.1E-14 T 18-10-2018 IPR003718 OsmC/Ohr family RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 Pfam PF00117 Glutamine amidotransferase class-I 196 372 1.1E-46 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00097 Anthranilate synthase component II signature 235 244 1.5E-5 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.5E-5 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.5E-5 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 SUPERFAMILY SSF52317 157 376 4.95E-60 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 47.284 T 18-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 4.8E-11 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 4.8E-11 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 4.8E-11 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 135 2.4E-52 T 18-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 SUPERFAMILY SSF52021 4 143 9.55E-56 T 18-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 1.6E-143 T 18-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 SMART SM01097 3 136 2.1E-91 T 18-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 3.6E-39 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 3.6E-39 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 3.6E-39 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 3.6E-39 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 3.6E-39 T 18-10-2018 RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 Gene3D G3DSA:3.40.50.880 155 377 2.8E-70 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_04040 1ba4fb12cfb424bf68a7fe1612e96436 379 Gene3D G3DSA:3.50.30.20 3 154 4.5E-59 T 18-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_12095 e708d3656356b8d49af35508d888f661 220 Gene3D G3DSA:3.30.420.10 14 211 6.4E-46 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_12095 e708d3656356b8d49af35508d888f661 220 SMART SM00479 22 210 3.0E-22 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_12095 e708d3656356b8d49af35508d888f661 220 SUPERFAMILY SSF53098 13 209 5.81E-52 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_12095 e708d3656356b8d49af35508d888f661 220 TIGRFAM TIGR01298 RNaseT: ribonuclease T 15 208 6.9E-83 T 18-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 RU84_12095 e708d3656356b8d49af35508d888f661 220 Hamap MF_00157 Ribonuclease T [rnt]. 1 220 90.188 T 18-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 RU84_12095 e708d3656356b8d49af35508d888f661 220 Pfam PF00929 Exonuclease 24 201 1.1E-31 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 SMART SM00342 248 330 3.7E-23 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 204 3.9E-49 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 1.8E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 1.8E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 SUPERFAMILY SSF46689 283 331 2.96E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 Pfam PF12833 Helix-turn-helix domain 255 331 2.2E-16 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03195 35a0985eaadd4909d9ab34b05b93772b 336 Gene3D G3DSA:1.10.10.60 227 334 1.0E-25 T 18-10-2018 RU84_09590 e7eab865b423e456f356fcf8d5ce69f5 196 Pfam PF04264 YceI-like domain 26 188 3.9E-41 T 18-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RU84_09590 e7eab865b423e456f356fcf8d5ce69f5 196 Gene3D G3DSA:2.40.128.110 24 190 5.5E-50 T 18-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RU84_09590 e7eab865b423e456f356fcf8d5ce69f5 196 SMART SM00867 25 189 2.2E-66 T 18-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like RU84_09590 e7eab865b423e456f356fcf8d5ce69f5 196 SUPERFAMILY SSF101874 23 189 3.14E-51 T 18-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 20 734 3.7E-240 T 18-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 Pfam PF00905 Penicillin binding protein transpeptidase domain 418 680 5.7E-26 T 18-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 Gene3D G3DSA:3.40.710.10 48 705 3.5E-244 T 18-10-2018 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 Gene3D G3DSA:3.30.2060.10 56 144 3.5E-244 T 18-10-2018 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 Pfam PF00912 Transglycosylase 153 323 2.7E-59 T 18-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 SUPERFAMILY SSF56601 305 749 4.55E-115 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 157 694 3.4E-155 T 18-10-2018 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 PIRSF PIRSF002799 1 785 3.0E-304 T 18-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 Gene3D G3DSA:1.10.3810.10 145 347 3.5E-244 T 18-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 SUPERFAMILY SSF53955 141 345 2.39E-68 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_05840 eacda873e8f4ddf24f5ae1be5d4253fd 798 Pfam PF14814 Bifunctional transglycosylase second domain 58 141 1.9E-20 T 18-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_16835 a8c20c5d65bb703a7023ee47877864b0 203 Gene3D G3DSA:2.60.120.590 19 202 2.6E-57 T 18-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily RU84_16835 a8c20c5d65bb703a7023ee47877864b0 203 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 28 198 4.9E-30 T 18-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like RU84_16835 a8c20c5d65bb703a7023ee47877864b0 203 SUPERFAMILY SSF51197 6 200 5.08E-58 T 18-10-2018 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SUPERFAMILY SSF56672 524 923 1.22E-148 T 18-10-2018 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SUPERFAMILY SSF53098 332 517 1.48E-54 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 ProSitePatterns PS00447 DNA polymerase family A signature. 751 770 - T 18-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Gene3D G3DSA:3.30.70.370 661 919 2.5E-109 T 18-10-2018 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Gene3D G3DSA:1.10.150.20 706 849 2.5E-109 T 18-10-2018 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SMART SM00475 1 256 9.5E-122 T 18-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Gene3D G3DSA:3.30.420.10 326 540 2.9E-69 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SMART SM00474 329 516 1.7E-35 T 18-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SUPERFAMILY SSF88723 1 165 1.62E-53 T 18-10-2018 IPR029060 PIN-like domain superfamily RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Gene3D G3DSA:3.40.50.1010 5 272 5.2E-95 T 18-10-2018 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SMART SM00279 168 203 7.0E-13 T 18-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SMART SM00482 683 887 7.8E-102 T 18-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Pfam PF00476 DNA polymerase family A 551 921 1.4E-151 T 18-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Gene3D G3DSA:1.20.1060.10 542 655 1.4E-38 T 18-10-2018 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 842 858 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 727 740 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 652 674 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 675 690 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 697 720 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 810 821 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 870 883 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 788 799 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 PRINTS PR00868 DNA-polymerase family A (pol I) signature 751 776 3.5E-76 T 18-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 SUPERFAMILY SSF47807 166 280 6.28E-34 T 18-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Pfam PF01612 3'-5' exonuclease 329 515 5.2E-37 T 18-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 259 1.3E-30 T 18-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 TIGRFAM TIGR00593 pola: DNA polymerase I 5 923 7.9E-294 T 18-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 165 5.9E-51 T 18-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RU84_15230 4098c9bfc1d9a9cb958bb1963a251795 923 Gene3D G3DSA:1.10.150.20 169 241 5.2E-95 T 18-10-2018 RU84_14895 35b7a6605fb405ea6f5a1e54cc5e9c00 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.0E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14895 35b7a6605fb405ea6f5a1e54cc5e9c00 309 SUPERFAMILY SSF53850 87 298 1.18E-25 T 18-10-2018 RU84_14895 35b7a6605fb405ea6f5a1e54cc5e9c00 309 Gene3D G3DSA:3.40.190.290 91 299 2.0E-24 T 18-10-2018 RU84_14895 35b7a6605fb405ea6f5a1e54cc5e9c00 309 SUPERFAMILY SSF46785 1 107 1.02E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_14895 35b7a6605fb405ea6f5a1e54cc5e9c00 309 Gene3D G3DSA:1.10.10.10 1 90 1.3E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14895 35b7a6605fb405ea6f5a1e54cc5e9c00 309 Pfam PF03466 LysR substrate binding domain 85 289 4.1E-21 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_14860 7f3405e8a486da4323afb51af1eec73c 163 SUPERFAMILY SSF50475 6 159 1.47E-45 T 18-10-2018 RU84_14860 7f3405e8a486da4323afb51af1eec73c 163 Gene3D G3DSA:2.30.110.10 1 162 5.3E-45 T 18-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RU84_14860 7f3405e8a486da4323afb51af1eec73c 163 Pfam PF01613 Flavin reductase like domain 11 158 8.5E-35 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_14860 7f3405e8a486da4323afb51af1eec73c 163 SMART SM00903 11 156 5.3E-53 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Pfam PF00072 Response regulator receiver domain 932 1042 4.4E-16 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 SUPERFAMILY SSF47384 670 750 7.85E-20 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 SMART SM00387 796 909 2.8E-33 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Gene3D G3DSA:1.10.287.130 670 749 3.2E-23 T 18-10-2018 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 SUPERFAMILY SSF55874 739 903 5.5E-44 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 796 903 6.8E-25 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 SMART SM00388 683 749 6.8E-19 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Gene3D G3DSA:3.30.565.10 750 909 2.0E-47 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 SUPERFAMILY SSF52172 928 1084 2.85E-26 T 18-10-2018 IPR011006 CheY-like superfamily RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Pfam PF00512 His Kinase A (phospho-acceptor) domain 684 749 1.3E-16 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 PRINTS PR00344 Bacterial sensor protein C-terminal signature 867 885 4.7E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 PRINTS PR00344 Bacterial sensor protein C-terminal signature 891 904 4.7E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 PRINTS PR00344 Bacterial sensor protein C-terminal signature 832 846 4.7E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 PRINTS PR00344 Bacterial sensor protein C-terminal signature 850 860 4.7E-11 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Gene3D G3DSA:3.40.50.12740 929 1101 8.1E-24 T 18-10-2018 RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 Gene3D G3DSA:1.10.4160.10 31 490 1.8E-16 T 18-10-2018 IPR038271 Purine-cytosine permease superfamily RU84_10270 48339730fa29f69f7d60739d39471ee1 1154 SMART SM00448 930 1042 3.4E-22 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_10405 d89950e068f57e3a01e25eebe09dee34 267 Gene3D G3DSA:1.10.12.10 204 267 3.1E-22 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_10405 d89950e068f57e3a01e25eebe09dee34 267 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_10405 d89950e068f57e3a01e25eebe09dee34 267 SUPERFAMILY SSF52096 1 259 1.71E-77 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10405 d89950e068f57e3a01e25eebe09dee34 267 Gene3D G3DSA:3.90.226.10 1 201 2.9E-66 T 18-10-2018 RU84_10405 d89950e068f57e3a01e25eebe09dee34 267 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 260 4.5E-54 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_15220 bb8632891c6f552a5bf456bc1b48a739 305 SUPERFAMILY SSF82861 28 109 5.23E-8 T 18-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RU84_15220 bb8632891c6f552a5bf456bc1b48a739 305 Pfam PF00924 Mechanosensitive ion channel 70 270 2.0E-42 T 18-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RU84_15220 bb8632891c6f552a5bf456bc1b48a739 305 Gene3D G3DSA:2.30.30.60 127 180 1.1E-8 T 18-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RU84_15220 bb8632891c6f552a5bf456bc1b48a739 305 Gene3D G3DSA:3.30.70.100 182 275 1.9E-19 T 18-10-2018 RU84_15220 bb8632891c6f552a5bf456bc1b48a739 305 SUPERFAMILY SSF82689 183 277 2.22E-20 T 18-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RU84_15220 bb8632891c6f552a5bf456bc1b48a739 305 SUPERFAMILY SSF50182 112 181 9.7E-13 T 18-10-2018 IPR010920 LSM domain superfamily RU84_17425 986fb41cfdd8f4b3aeb77e5e11cd437a 162 Pfam PF01464 Transglycosylase SLT domain 42 146 3.5E-20 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_17425 986fb41cfdd8f4b3aeb77e5e11cd437a 162 Gene3D G3DSA:1.10.530.10 26 159 7.3E-29 T 18-10-2018 RU84_17425 986fb41cfdd8f4b3aeb77e5e11cd437a 162 SUPERFAMILY SSF53955 26 158 8.73E-33 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_15115 c67aa309fb62bc84d2f9943d23ea7002 361 Gene3D G3DSA:3.40.640.10 44 268 3.8E-111 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_15115 c67aa309fb62bc84d2f9943d23ea7002 361 SUPERFAMILY SSF53383 27 357 7.79E-77 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_15115 c67aa309fb62bc84d2f9943d23ea7002 361 Pfam PF00155 Aminotransferase class I and II 31 355 2.2E-59 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_15115 c67aa309fb62bc84d2f9943d23ea7002 361 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 13 358 4.0E-96 T 18-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RU84_15115 c67aa309fb62bc84d2f9943d23ea7002 361 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 361 58.401 T 18-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 RU84_15115 c67aa309fb62bc84d2f9943d23ea7002 361 Gene3D G3DSA:3.90.1150.10 26 350 3.8E-111 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_07110 53c28e98ed1ec1439717674355dd477c 329 SUPERFAMILY SSF51569 4 319 9.94E-101 T 18-10-2018 RU84_07110 53c28e98ed1ec1439717674355dd477c 329 TIGRFAM TIGR00874 talAB: transaldolase 5 318 1.2E-127 T 18-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RU84_07110 53c28e98ed1ec1439717674355dd477c 329 ProSitePatterns PS01054 Transaldolase signature 1. 32 40 - T 18-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RU84_07110 53c28e98ed1ec1439717674355dd477c 329 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 15 314 3.8E-91 T 18-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RU84_07110 53c28e98ed1ec1439717674355dd477c 329 Gene3D G3DSA:3.20.20.70 2 326 7.6E-122 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_07110 53c28e98ed1ec1439717674355dd477c 329 ProSitePatterns PS00958 Transaldolase active site. 130 147 - T 18-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 RU84_00580 f7677200c870932f440468c91d950b6c 582 SUPERFAMILY SSF54106 111 157 6.15E-10 T 18-10-2018 RU84_00580 f7677200c870932f440468c91d950b6c 582 SMART SM00257 112 156 3.6E-14 T 18-10-2018 IPR018392 LysM domain RU84_00580 f7677200c870932f440468c91d950b6c 582 Gene3D G3DSA:3.10.350.10 99 171 1.4E-15 T 18-10-2018 IPR036779 LysM domain superfamily RU84_00580 f7677200c870932f440468c91d950b6c 582 Pfam PF01476 LysM domain 113 156 9.5E-12 T 18-10-2018 IPR018392 LysM domain RU84_00580 f7677200c870932f440468c91d950b6c 582 Gene3D G3DSA:3.90.1720.10 467 582 1.5E-31 T 18-10-2018 RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 TIGRFAM TIGR01136 cysKM: cysteine synthase 17 300 1.5E-117 T 18-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 289 3.7E-66 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 TIGRFAM TIGR01138 cysM: cysteine synthase B 16 300 3.6E-138 T 18-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 Gene3D G3DSA:3.40.50.1100 19 296 8.5E-106 T 18-10-2018 RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 41 59 - T 18-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 SUPERFAMILY SSF53686 17 300 4.85E-90 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_15410 1d27bcba7e9af5258a425912e6e550d7 304 Gene3D G3DSA:3.40.50.1100 46 161 8.5E-106 T 18-10-2018 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 SUPERFAMILY SSF55282 3 178 2.59E-77 T 18-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 Gene3D G3DSA:3.30.1440.10 1 178 3.1E-79 T 18-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.1E-42 T 18-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 18-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 Pfam PF00281 Ribosomal protein L5 24 80 1.4E-27 T 18-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 178 42.334 T 18-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02070 80c69eefd9fdc59ce0e2e2d53c7551b2 178 PIRSF PIRSF002161 1 178 3.0E-67 T 18-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02920 eeead41919a668f6a63a294783b2b674 422 SUPERFAMILY SSF55874 235 402 7.07E-37 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_02920 eeead41919a668f6a63a294783b2b674 422 SUPERFAMILY SSF47384 161 246 2.16E-13 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_02920 eeead41919a668f6a63a294783b2b674 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 401 2.4E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_02920 eeead41919a668f6a63a294783b2b674 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 343 2.4E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_02920 eeead41919a668f6a63a294783b2b674 422 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 382 2.4E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_02920 eeead41919a668f6a63a294783b2b674 422 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 402 1.5E-21 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_02920 eeead41919a668f6a63a294783b2b674 422 SMART SM00387 290 404 2.4E-26 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_02920 eeead41919a668f6a63a294783b2b674 422 Gene3D G3DSA:1.10.287.130 149 243 2.4E-12 T 18-10-2018 RU84_02920 eeead41919a668f6a63a294783b2b674 422 SMART SM00388 177 245 1.3E-8 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_02920 eeead41919a668f6a63a294783b2b674 422 Gene3D G3DSA:3.30.565.10 252 409 1.1E-35 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_02920 eeead41919a668f6a63a294783b2b674 422 Pfam PF00512 His Kinase A (phospho-acceptor) domain 177 245 2.0E-6 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_06880 94090765338b4f10c63d94dc59343047 478 PIRSF PIRSF006060 11 477 2.8E-71 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_06880 94090765338b4f10c63d94dc59343047 478 Pfam PF13520 Amino acid permease 41 447 1.1E-39 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_06880 94090765338b4f10c63d94dc59343047 478 Gene3D G3DSA:1.20.1740.10 26 472 7.1E-56 T 18-10-2018 RU84_06880 94090765338b4f10c63d94dc59343047 478 TIGRFAM TIGR00908 2A0305: ethanolamine permease 24 467 2.5E-177 T 18-10-2018 IPR004757 Ethanolamine permease RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 Pfam PF03934 Type II secretion system (T2SS), protein K 34 310 3.9E-75 T 18-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 SUPERFAMILY SSF54523 41 313 4.39E-21 T 18-10-2018 RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 SUPERFAMILY SSF158544 105 209 1.54E-28 T 18-10-2018 IPR038072 GspK, central domain superfamily RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 Gene3D G3DSA:1.10.40.60 103 210 1.3E-69 T 18-10-2018 IPR038072 GspK, central domain superfamily RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 PIRSF PIRSF002786 4 317 2.3E-91 T 18-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 Gene3D G3DSA:1.10.40.60 211 278 1.3E-69 T 18-10-2018 IPR038072 GspK, central domain superfamily RU84_09370 69d862d7b7a6b152d20e7e142c2e5342 319 Gene3D G3DSA:3.30.1300.30 46 303 1.3E-69 T 18-10-2018 RU84_16515 0095fde7f584df72e8ccf05fa4ee9132 203 Gene3D G3DSA:3.10.540.10 16 106 9.6E-32 T 18-10-2018 RU84_16515 0095fde7f584df72e8ccf05fa4ee9132 203 PIRSF PIRSF029557 11 200 4.7E-41 T 18-10-2018 IPR010707 Protein of unknown function DUF1285 RU84_16515 0095fde7f584df72e8ccf05fa4ee9132 203 Gene3D G3DSA:2.30.270.10 107 174 4.4E-14 T 18-10-2018 IPR023361 DUF1285, beta-roll domain superfamily RU84_16515 0095fde7f584df72e8ccf05fa4ee9132 203 Pfam PF06938 Protein of unknown function (DUF1285) 56 196 1.7E-45 T 18-10-2018 IPR010707 Protein of unknown function DUF1285 RU84_07895 ad83d17fcaadfbf01a14d954cc1a583f 225 Gene3D G3DSA:3.30.240.20 92 165 8.3E-14 T 18-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily RU84_07895 ad83d17fcaadfbf01a14d954cc1a583f 225 Pfam PF04239 Protein of unknown function (DUF421) 101 184 3.3E-13 T 18-10-2018 IPR007353 Protein of unknown function DUF421 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 Pfam PF01037 Lrp/AsnC ligand binding domain 69 135 1.5E-9 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 SMART SM00344 1 107 9.2E-20 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 Gene3D G3DSA:3.30.70.920 56 140 5.3E-13 T 18-10-2018 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 Gene3D G3DSA:1.10.10.10 1 52 3.0E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 7.7E-13 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 SUPERFAMILY SSF46785 1 56 2.16E-14 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.8E-11 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.8E-11 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.8E-11 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_11800 22f70fb7c3b4c0be57944d3ca6ee1568 140 SUPERFAMILY SSF54909 64 139 6.43E-11 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_18740 87283e8af9cddd5a09a50dc7ae75876b 91 Gene3D G3DSA:1.20.58.1000 1 91 1.7E-29 T 18-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily RU84_18740 87283e8af9cddd5a09a50dc7ae75876b 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 87 6.1E-19 T 18-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RU84_13955 4b9804b88291b0025f0261d0f6ca81e6 370 SUPERFAMILY SSF53659 3 357 1.73E-113 T 18-10-2018 RU84_13955 4b9804b88291b0025f0261d0f6ca81e6 370 Gene3D G3DSA:3.40.718.10 1 363 1.9E-141 T 18-10-2018 RU84_13955 4b9804b88291b0025f0261d0f6ca81e6 370 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 5.4E-84 T 18-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RU84_13955 4b9804b88291b0025f0261d0f6ca81e6 370 SMART SM01329 6 355 5.7E-171 T 18-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RU84_13955 4b9804b88291b0025f0261d0f6ca81e6 370 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 358 1.4E-168 T 18-10-2018 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 RU84_13955 4b9804b88291b0025f0261d0f6ca81e6 370 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 18-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 SUPERFAMILY SSF56317 1 244 3.92E-60 T 18-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 Gene3D G3DSA:3.40.50.620 261 540 8.7E-111 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 Pfam PF02540 NAD synthase 265 513 2.4E-71 T 18-10-2018 IPR022310 NAD/GMP synthase RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 SUPERFAMILY SSF52402 257 523 1.68E-76 T 18-10-2018 RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 Gene3D G3DSA:3.60.110.10 1 260 1.0E-110 T 18-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 TIGRFAM TIGR00552 nadE: NAD+ synthetase 270 513 1.8E-58 T 18-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 PIRSF PIRSF006630 1 541 1.4E-206 T 18-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 Pfam PF00795 Carbon-nitrogen hydrolase 5 244 1.0E-30 T 18-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RU84_13915 0bf3ed2e4b2b590bc8a19092c03f0121 541 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 4 539 28.264 T 18-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 PIRSF PIRSF001362 2 148 8.5E-8 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 PIRSF PIRSF001362 142 275 8.5E-25 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 PIRSF PIRSF001362 287 409 4.3E-12 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 PIRSF PIRSF001362 415 534 9.0E-7 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 SUPERFAMILY SSF51621 6 514 4.08E-127 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 Pfam PF00463 Isocitrate lyase family 97 270 8.3E-25 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 Pfam PF00463 Isocitrate lyase family 316 396 2.1E-11 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 Pfam PF00463 Isocitrate lyase family 424 521 4.9E-11 T 18-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 RU84_12715 3d373eacb3150cef592b1cfcbfece92a 534 Gene3D G3DSA:3.20.20.60 410 532 1.7E-18 T 18-10-2018 RU84_01755 8f0a4802670434bf5aa8574aacdc5ae4 324 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 324 139.063 T 18-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 RU84_01755 8f0a4802670434bf5aa8574aacdc5ae4 324 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 320 5.6E-135 T 18-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 RU84_01755 8f0a4802670434bf5aa8574aacdc5ae4 324 Gene3D G3DSA:3.40.630.10 1 324 1.6E-111 T 18-10-2018 RU84_01755 8f0a4802670434bf5aa8574aacdc5ae4 324 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 44 323 8.0E-55 T 18-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 RU84_01755 8f0a4802670434bf5aa8574aacdc5ae4 324 SUPERFAMILY SSF53187 1 320 3.97E-83 T 18-10-2018 RU84_01755 8f0a4802670434bf5aa8574aacdc5ae4 324 PIRSF PIRSF017020 1 324 2.7E-115 T 18-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 RU84_14935 e1ab87ebbc9dd577df40852ce883d597 409 Gene3D G3DSA:3.30.1540.10 242 333 1.9E-135 T 18-10-2018 RU84_14935 e1ab87ebbc9dd577df40852ce883d597 409 Gene3D G3DSA:3.40.50.10540 4 396 1.9E-135 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_14935 e1ab87ebbc9dd577df40852ce883d597 409 Pfam PF02515 CoA-transferase family III 4 382 6.9E-130 T 18-10-2018 IPR003673 CoA-transferase family III GO:0003824 RU84_14935 e1ab87ebbc9dd577df40852ce883d597 409 SUPERFAMILY SSF89796 1 404 6.28E-137 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_15205 60e0abfd845f1fadfc48eb56d33b2cd4 143 Pfam PF02566 OsmC-like protein 45 138 1.8E-16 T 18-10-2018 IPR003718 OsmC/Ohr family RU84_15205 60e0abfd845f1fadfc48eb56d33b2cd4 143 Gene3D G3DSA:3.30.300.20 48 141 2.7E-31 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_15205 60e0abfd845f1fadfc48eb56d33b2cd4 143 Gene3D G3DSA:2.20.25.10 1 47 3.0E-22 T 18-10-2018 RU84_15205 60e0abfd845f1fadfc48eb56d33b2cd4 143 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 1.8E-53 T 18-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 RU84_15205 60e0abfd845f1fadfc48eb56d33b2cd4 143 SUPERFAMILY SSF82784 1 140 3.27E-44 T 18-10-2018 IPR036102 OsmC/Ohr superfamily RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 Gene3D G3DSA:3.90.1170.20 10 278 7.9E-112 T 18-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 SUPERFAMILY SSF54675 6 112 1.58E-30 T 18-10-2018 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 PIRSF PIRSF006250 6 281 1.1E-97 T 18-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 Gene3D G3DSA:3.20.20.70 123 269 7.9E-112 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 SUPERFAMILY SSF51690 114 279 5.49E-61 T 18-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 16 279 1.2E-96 T 18-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 114 278 3.0E-59 T 18-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 RU84_18075 d339b29fd572bdf2ef14be77f92e5d23 281 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 24 112 1.8E-24 T 18-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 1.4E-15 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 SUPERFAMILY SSF47616 80 208 1.39E-36 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 Pfam PF14497 Glutathione S-transferase, C-terminal domain 124 197 3.6E-6 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 208 2.4E-89 T 18-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 Gene3D G3DSA:1.20.1050.10 88 210 2.8E-53 T 18-10-2018 RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 Gene3D G3DSA:3.40.30.10 1 87 1.4E-26 T 18-10-2018 RU84_00345 8f93f43f1cb68d8bb9fa0af5d1ce492e 210 SUPERFAMILY SSF52833 1 89 3.72E-24 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_09875 4693f4385b9a77ebeb46434589da2967 887 Pfam PF08335 GlnD PII-uridylyltransferase 175 317 1.2E-36 T 18-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 Pfam PF01909 Nucleotidyltransferase domain 66 111 2.2E-5 T 18-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 SUPERFAMILY SSF81301 37 166 1.69E-16 T 18-10-2018 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 SUPERFAMILY SSF109604 425 548 3.56E-13 T 18-10-2018 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 PIRSF PIRSF006288 10 884 0.0 T 18-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 Gene3D G3DSA:1.10.3210.10 444 584 8.7E-10 T 18-10-2018 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 SUPERFAMILY SSF55021 809 861 3.58E-9 T 18-10-2018 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 Pfam PF01966 HD domain 492 586 2.7E-8 T 18-10-2018 IPR006674 HD domain RU84_09875 4693f4385b9a77ebeb46434589da2967 887 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 31 877 1.5E-266 T 18-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 SMART SM00471 453 600 2.0E-5 T 18-10-2018 IPR003607 HD/PDEase domain RU84_09875 4693f4385b9a77ebeb46434589da2967 887 SUPERFAMILY SSF81593 190 312 6.28E-9 T 18-10-2018 RU84_09875 4693f4385b9a77ebeb46434589da2967 887 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 887 286.665 T 18-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 222 338 4.6E-36 T 18-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Gene3D G3DSA:3.30.230.10 226 338 9.0E-36 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 149 2.1E-11 T 18-10-2018 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Pfam PF08676 MutL C terminal dimerisation domain 458 606 3.6E-44 T 18-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 SUPERFAMILY SSF54211 202 339 1.14E-33 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 9 646 26.786 T 18-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 101 107 - T 18-10-2018 IPR014762 DNA mismatch repair, conserved site RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Gene3D G3DSA:3.30.565.10 10 224 3.3E-65 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Gene3D G3DSA:2.30.42.20 464 643 2.5E-53 T 18-10-2018 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 10 319 1.6E-95 T 18-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 SMART SM00853 462 606 6.1E-46 T 18-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 SMART SM01340 221 339 7.0E-52 T 18-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 Gene3D G3DSA:3.30.1370.100 506 601 2.5E-53 T 18-10-2018 RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 SUPERFAMILY SSF118116 457 648 2.48E-57 T 18-10-2018 IPR037198 MutL, C-terminal domain superfamily RU84_06825 2f59c0db9ec2ce3fe5868d0f85e982d4 650 SUPERFAMILY SSF55874 8 211 2.1E-50 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_14640 ed99f54e6ddbce7af55577d53bc8a7f3 166 Gene3D G3DSA:1.20.120.20 2 160 1.6E-9 T 18-10-2018 RU84_14640 ed99f54e6ddbce7af55577d53bc8a7f3 166 SUPERFAMILY SSF58113 4 160 1.31E-7 T 18-10-2018 RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 Gene3D G3DSA:2.30.30.40 42 114 1.5E-33 T 18-10-2018 RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 SUPERFAMILY SSF57783 1 34 1.26E-14 T 18-10-2018 RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 Gene3D G3DSA:2.20.25.10 1 41 1.1E-19 T 18-10-2018 RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 114 9.9E-49 T 18-10-2018 IPR004624 PhnA protein RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 Pfam PF08274 PhnA Zinc-Ribbon 2 30 6.0E-17 T 18-10-2018 IPR013987 PhnA protein, N-terminal RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 SUPERFAMILY SSF82057 39 114 1.05E-27 T 18-10-2018 RU84_03345 bfe0ab06457c0240bd319e0685f052a3 114 Pfam PF03831 PhnA domain 44 114 8.2E-34 T 18-10-2018 IPR013988 PhnA protein, C-terminal RU84_15055 da3b6aa8cf7b60facbf82fb090aa7b38 221 Gene3D G3DSA:3.30.420.40 3 207 5.6E-58 T 18-10-2018 RU84_15055 da3b6aa8cf7b60facbf82fb090aa7b38 221 Pfam PF00814 Glycoprotease family 33 135 6.3E-24 T 18-10-2018 IPR000905 Gcp-like domain RU84_15055 da3b6aa8cf7b60facbf82fb090aa7b38 221 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 207 1.6E-51 T 18-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 RU84_15055 da3b6aa8cf7b60facbf82fb090aa7b38 221 SUPERFAMILY SSF53067 1 103 1.81E-23 T 18-10-2018 RU84_15055 da3b6aa8cf7b60facbf82fb090aa7b38 221 SUPERFAMILY SSF53067 111 205 4.79E-14 T 18-10-2018 RU84_15055 da3b6aa8cf7b60facbf82fb090aa7b38 221 Gene3D G3DSA:3.30.420.40 95 176 5.6E-58 T 18-10-2018 RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 SUPERFAMILY SSF53383 133 520 5.25E-45 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 Gene3D G3DSA:3.40.640.10 162 381 2.4E-214 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 Gene3D G3DSA:1.10.20.110 38 403 2.4E-214 T 18-10-2018 RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 311 324 - T 18-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 TIGRFAM TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase 12 525 4.8E-236 T 18-10-2018 IPR022518 Aspartate 4-decarboxylase KEGG: 00220+2.6.1.1|KEGG: 00250+4.1.1.12+2.6.1.1|KEGG: 00270+4.1.1.12+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 Pfam PF00155 Aminotransferase class I and II 183 507 7.1E-22 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_06280 e2de7ceb10d5fdf859256bd5a669e1c0 532 Gene3D G3DSA:3.90.1150.10 31 523 2.4E-214 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_18210 40f7a103bbf5619a514e9086bca471c3 180 SUPERFAMILY SSF52218 1 174 6.68E-34 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_18210 40f7a103bbf5619a514e9086bca471c3 180 Pfam PF03358 NADPH-dependent FMN reductase 1 138 1.9E-31 T 18-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RU84_18210 40f7a103bbf5619a514e9086bca471c3 180 Gene3D G3DSA:3.40.50.360 1 176 2.1E-40 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_10620 d8f3aaecc6df81203368c16bf656e9c6 489 Pfam PF00171 Aldehyde dehydrogenase family 17 473 8.6E-166 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_10620 d8f3aaecc6df81203368c16bf656e9c6 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_10620 d8f3aaecc6df81203368c16bf656e9c6 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_10620 d8f3aaecc6df81203368c16bf656e9c6 489 Gene3D G3DSA:3.40.309.10 255 445 2.1E-166 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_10620 d8f3aaecc6df81203368c16bf656e9c6 489 SUPERFAMILY SSF53720 3 477 1.28E-157 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_10620 d8f3aaecc6df81203368c16bf656e9c6 489 Gene3D G3DSA:3.40.605.10 18 473 2.1E-166 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Pfam PF05954 Phage late control gene D protein (GPD) 44 384 1.9E-57 T 18-10-2018 RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Gene3D G3DSA:3.30.1920.30 254 336 1.6E-41 T 18-10-2018 RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 30 583 5.3E-68 T 18-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Gene3D G3DSA:2.30.110.50 30 379 1.6E-41 T 18-10-2018 RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Pfam PF10106 Uncharacterized protein conserved in bacteria (DUF2345) 688 836 3.8E-42 T 18-10-2018 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Pfam PF13296 Putative type VI secretion system Rhs element Vgr 559 666 2.4E-37 T 18-10-2018 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 SUPERFAMILY SSF69255 436 531 7.06E-25 T 18-10-2018 RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 35 586 3.7E-58 T 18-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 SUPERFAMILY SSF69279 25 197 1.02E-38 T 18-10-2018 RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Gene3D G3DSA:2.40.50.230 427 536 2.7E-32 T 18-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RU84_11875 4f7a43dab463d15c8d180fe810d8fba7 1064 Gene3D G3DSA:3.55.50.10 111 221 1.6E-41 T 18-10-2018 RU84_15870 de2c3136116fae84840107b5c18cf067 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 1.5E-40 T 18-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 1.5E-40 T 18-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 1.5E-40 T 18-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 1.5E-40 T 18-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 1.5E-40 T 18-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 18-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_15870 de2c3136116fae84840107b5c18cf067 143 Gene3D G3DSA:3.30.70.141 1 143 6.7E-62 T 18-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.791 T 18-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 SMART SM00562 3 140 1.8E-89 T 18-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 SUPERFAMILY SSF54919 1 141 1.44E-58 T 18-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_15870 de2c3136116fae84840107b5c18cf067 143 Pfam PF00334 Nucleoside diphosphate kinase 4 138 3.0E-56 T 18-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_11820 d199462ae61141a20f0edfcfa95f97b2 235 Gene3D G3DSA:3.30.450.20 3 180 4.1E-21 T 18-10-2018 RU84_11820 d199462ae61141a20f0edfcfa95f97b2 235 Pfam PF02743 Cache domain 7 210 1.5E-15 T 18-10-2018 IPR033479 Double Cache domain 1 RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 Gene3D G3DSA:3.40.50.720 2 254 8.3E-82 T 18-10-2018 RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.1E-39 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.1E-39 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.1E-39 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.1E-39 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.1E-39 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.1E-39 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 4.9E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.9E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 4.9E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 253 2.6E-67 T 18-10-2018 RU84_08240 2a4755697fbc9d47065336e8f215f4cf 254 SUPERFAMILY SSF51735 10 254 2.83E-85 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_09975 9dc673ababccccec16ff989520a61774 109 Pfam PF01022 Bacterial regulatory protein, arsR family 13 57 6.4E-14 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09975 9dc673ababccccec16ff989520a61774 109 SMART SM00418 6 88 3.9E-27 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09975 9dc673ababccccec16ff989520a61774 109 SUPERFAMILY SSF46785 2 89 2.81E-25 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09975 9dc673ababccccec16ff989520a61774 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 4.6E-21 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09975 9dc673ababccccec16ff989520a61774 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 4.6E-21 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09975 9dc673ababccccec16ff989520a61774 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 4.6E-21 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09975 9dc673ababccccec16ff989520a61774 109 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 4.6E-21 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09975 9dc673ababccccec16ff989520a61774 109 Gene3D G3DSA:1.10.10.10 1 90 3.2E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16120 0085f46dd607ca4be0ac10cf06490dfb 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 51 6.9E-25 T 18-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16120 0085f46dd607ca4be0ac10cf06490dfb 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 15.385 T 18-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16120 0085f46dd607ca4be0ac10cf06490dfb 51 Pfam PF00471 Ribosomal protein L33 4 49 6.1E-18 T 18-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16120 0085f46dd607ca4be0ac10cf06490dfb 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 18-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16120 0085f46dd607ca4be0ac10cf06490dfb 51 Gene3D G3DSA:2.20.28.120 1 51 2.9E-28 T 18-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16120 0085f46dd607ca4be0ac10cf06490dfb 51 SUPERFAMILY SSF57829 1 49 1.28E-18 T 18-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 Gene3D G3DSA:3.40.50.150 231 433 4.0E-55 T 18-10-2018 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 SUPERFAMILY SSF48013 12 149 1.34E-26 T 18-10-2018 IPR035926 NusB-like superfamily RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 Pfam PF01029 NusB family 13 130 5.4E-16 T 18-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 Gene3D G3DSA:1.10.940.10 8 144 2.4E-32 T 18-10-2018 IPR035926 NusB-like superfamily RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 SUPERFAMILY SSF53335 141 433 5.93E-66 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 17 432 1.0E-112 T 18-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 Pfam PF01189 16S rRNA methyltransferase RsmB/F 240 430 2.3E-54 T 18-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 145 233 2.3E-6 T 18-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 Gene3D G3DSA:3.30.70.1170 173 230 1.0E-18 T 18-10-2018 RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 4.6E-28 T 18-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 4.6E-28 T 18-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 4.6E-28 T 18-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 415 432 4.6E-28 T 18-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RU84_00125 44a17e386c5ad08cbc778ffcaaac7ebc 434 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 4.6E-28 T 18-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase RU84_01375 e336df17942018f1f0eb079b322e400d 502 Gene3D G3DSA:3.40.50.620 1 327 4.2E-152 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_01375 e336df17942018f1f0eb079b322e400d 502 SUPERFAMILY SSF48163 313 471 2.35E-34 T 18-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RU84_01375 e336df17942018f1f0eb079b322e400d 502 Gene3D G3DSA:1.10.10.350 370 493 1.1E-29 T 18-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RU84_01375 e336df17942018f1f0eb079b322e400d 502 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_01375 e336df17942018f1f0eb079b322e400d 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 208 216 1.2E-22 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_01375 e336df17942018f1f0eb079b322e400d 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 202 1.2E-22 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_01375 e336df17942018f1f0eb079b322e400d 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.2E-22 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_01375 e336df17942018f1f0eb079b322e400d 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.2E-22 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_01375 e336df17942018f1f0eb079b322e400d 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.2E-22 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_01375 e336df17942018f1f0eb079b322e400d 502 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 468 4.9E-143 T 18-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RU84_01375 e336df17942018f1f0eb079b322e400d 502 SUPERFAMILY SSF52374 2 307 9.92E-114 T 18-10-2018 RU84_01375 e336df17942018f1f0eb079b322e400d 502 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 319 8.7E-114 T 18-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RU84_01375 e336df17942018f1f0eb079b322e400d 502 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 470 30.563 T 18-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 RU84_08355 2b4650cef364930aeba0316874a3fff2 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 4.9E-14 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08355 2b4650cef364930aeba0316874a3fff2 310 SUPERFAMILY SSF53850 94 306 1.28E-37 T 18-10-2018 RU84_08355 2b4650cef364930aeba0316874a3fff2 310 Pfam PF03466 LysR substrate binding domain 94 300 4.7E-37 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08355 2b4650cef364930aeba0316874a3fff2 310 Gene3D G3DSA:1.10.10.10 7 95 3.7E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08355 2b4650cef364930aeba0316874a3fff2 310 Gene3D G3DSA:3.40.190.10 168 273 2.1E-58 T 18-10-2018 RU84_08355 2b4650cef364930aeba0316874a3fff2 310 SUPERFAMILY SSF46785 7 90 9.48E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08355 2b4650cef364930aeba0316874a3fff2 310 Gene3D G3DSA:3.40.190.10 96 299 2.1E-58 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 558 621 2.4E-8 T 18-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Gene3D G3DSA:3.50.50.60 106 241 2.4E-87 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 230 244 2.9E-8 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 2.9E-8 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 101 110 2.9E-8 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 2.9E-8 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 1.2E-14 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.2E-14 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 1.2E-14 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 1.2E-14 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Gene3D G3DSA:3.50.50.60 4 278 2.4E-87 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07295 172cf9abe71701a6f47030a6e621507e 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 3 798 0.0 T 18-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Gene3D G3DSA:3.30.413.10 629 793 7.8E-33 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Gene3D G3DSA:1.10.10.1100 421 475 1.4E-11 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 421 469 4.6E-10 T 18-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RU84_07295 172cf9abe71701a6f47030a6e621507e 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 677 693 - T 18-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 SUPERFAMILY SSF56014 631 804 8.37E-50 T 18-10-2018 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 SUPERFAMILY SSF51905 145 304 1.6E-28 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 280 4.6E-50 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 630 746 4.9E-15 T 18-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00397 Sirohaem Fe-binding site signature 677 695 7.0E-6 T 18-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PRINTS PR00397 Sirohaem Fe-binding site signature 634 652 7.0E-6 T 18-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 PIRSF PIRSF037149 1 836 0.0 T 18-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 RU84_07295 172cf9abe71701a6f47030a6e621507e 848 SUPERFAMILY SSF51905 2 186 1.21E-40 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07295 172cf9abe71701a6f47030a6e621507e 848 SUPERFAMILY SSF55124 500 639 3.27E-24 T 18-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 Gene3D G3DSA:3.20.20.70 1 345 1.6E-156 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 18-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 PIRSF PIRSF001359 1 329 9.7E-82 T 18-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 SUPERFAMILY SSF51569 3 328 9.96E-105 T 18-10-2018 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 3.6E-95 T 18-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 2.7E-91 T 18-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 RU84_09470 69e8344c49d1e8ca885720256231f7b4 345 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 344 1.9E-194 T 18-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 RU84_08130 2135e428889a25cb5dafe499c9f4c6f0 96 SUPERFAMILY SSF54909 1 95 1.02E-39 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_08130 2135e428889a25cb5dafe499c9f4c6f0 96 Gene3D G3DSA:3.30.70.1060 1 94 1.0E-36 T 18-10-2018 RU84_08130 2135e428889a25cb5dafe499c9f4c6f0 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 9.4E-42 T 18-10-2018 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RU84_08130 2135e428889a25cb5dafe499c9f4c6f0 96 PIRSF PIRSF001486 1 94 9.3E-50 T 18-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RU84_08130 2135e428889a25cb5dafe499c9f4c6f0 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 2.3E-49 T 18-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RU84_08130 2135e428889a25cb5dafe499c9f4c6f0 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 2.0E-27 T 18-10-2018 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 SUPERFAMILY SSF51306 59 262 3.66E-66 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 Gene3D G3DSA:2.170.230.10 136 218 2.5E-69 T 18-10-2018 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 49 257 5.0E-49 T 18-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 Pfam PF00717 Peptidase S24-like 68 149 5.3E-22 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 Pfam PF10502 Signal peptidase, peptidase S26 217 256 1.3E-5 T 18-10-2018 IPR019533 Peptidase S26 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 ProSitePatterns PS00501 Signal peptidases I serine active site. 70 77 - T 18-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 ProSitePatterns PS00760 Signal peptidases I lysine active site. 127 139 - T 18-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 61 77 2.3E-24 T 18-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 125 137 2.3E-24 T 18-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 219 238 2.3E-24 T 18-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 RU84_04735 17d17b35beaf66cccecd171e8ff2d3d0 275 Gene3D G3DSA:2.10.109.10 59 258 2.5E-69 T 18-10-2018 RU84_05835 33604fadcbb3e6e430ab5c82c8f9e05b 183 Gene3D G3DSA:1.25.40.10 46 183 1.4E-6 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_05835 33604fadcbb3e6e430ab5c82c8f9e05b 183 SUPERFAMILY SSF48452 88 148 3.52E-6 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_09345 46fd9ecad23fbd8ab25f25f462e33c90 147 SUPERFAMILY SSF55961 5 145 6.93E-17 T 18-10-2018 RU84_09345 46fd9ecad23fbd8ab25f25f462e33c90 147 Gene3D G3DSA:3.30.530.20 4 146 3.8E-15 T 18-10-2018 IPR023393 START-like domain superfamily RU84_09345 46fd9ecad23fbd8ab25f25f462e33c90 147 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 143 3.3E-8 T 18-10-2018 IPR019587 Polyketide cyclase/dehydrase RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 49 134 7.3E-37 T 18-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 Gene3D G3DSA:3.30.110.10 42 137 2.5E-37 T 18-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 42 6.3E-15 T 18-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 136 8.1E-54 T 18-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 SUPERFAMILY SSF54364 2 44 5.62E-15 T 18-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 SUPERFAMILY SSF55200 49 137 1.26E-32 T 18-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 RU84_15330 f1f2be823f6ccd6cc1190dd24b44f5ad 137 Gene3D G3DSA:3.10.20.80 1 41 5.4E-15 T 18-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 Gene3D G3DSA:1.10.10.10 6 87 7.6E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 4.5E-7 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 4.5E-7 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 SUPERFAMILY SSF48008 96 233 2.62E-25 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 SUPERFAMILY SSF46785 6 80 3.68E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 SMART SM00895 100 230 3.4E-20 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 7.6E-19 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 Pfam PF07729 FCD domain 101 229 2.8E-23 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 Gene3D G3DSA:1.20.120.530 92 236 5.3E-27 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_11715 13959c2f4d608d5a0cede64ca8b9db04 237 SMART SM00345 17 76 1.0E-18 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_01895 354df0d70492845f664ba9e386960430 272 Gene3D G3DSA:3.40.50.300 10 264 5.9E-68 T 18-10-2018 RU84_01895 354df0d70492845f664ba9e386960430 272 Pfam PF00005 ABC transporter 28 177 2.3E-31 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_01895 354df0d70492845f664ba9e386960430 272 SUPERFAMILY SSF52540 12 238 1.9E-65 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01895 354df0d70492845f664ba9e386960430 272 SMART SM00382 37 234 6.4E-13 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_15905 282c72505ccc177966ade535d77856ad 437 Gene3D G3DSA:3.40.50.1820 26 308 2.7E-28 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_15905 282c72505ccc177966ade535d77856ad 437 Pfam PF00561 alpha/beta hydrolase fold 58 293 5.0E-8 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_15905 282c72505ccc177966ade535d77856ad 437 SUPERFAMILY SSF53474 35 307 9.14E-30 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 398 1.0E-167 T 18-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 Gene3D G3DSA:3.40.50.1100 18 214 3.1E-172 T 18-10-2018 RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 Gene3D G3DSA:3.40.50.1100 62 391 3.1E-172 T 18-10-2018 RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 399 49.217 T 18-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 PIRSF PIRSF001413 2 401 7.0E-161 T 18-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 60 386 4.2E-48 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 89 103 - T 18-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_08835 a0f76f29aeba3b00583142b5d1c9eb49 401 SUPERFAMILY SSF53686 11 397 5.89E-136 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Gene3D G3DSA:3.90.1570.30 2 141 1.7E-28 T 18-10-2018 RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Pfam PF04851 Type III restriction enzyme, res subunit 160 312 4.4E-35 T 18-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 SMART SM00487 155 343 9.6E-20 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 SUPERFAMILY SSF52540 171 526 5.76E-33 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Pfam PF00271 Helicase conserved C-terminal domain 424 524 2.0E-6 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Pfam PF08463 EcoEI R protein C-terminal 775 924 1.6E-22 T 18-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Gene3D G3DSA:3.40.50.300 334 563 3.4E-49 T 18-10-2018 RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 55 122 3.9E-7 T 18-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 RU84_11940 84a1ab2057b1714d43dd02d05371072a 932 Gene3D G3DSA:3.40.50.300 144 326 5.6E-47 T 18-10-2018 RU84_02545 a3919164593a5271cd94be6db0fb7c79 407 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 241 398 1.7E-39 T 18-10-2018 IPR000160 GGDEF domain RU84_02545 a3919164593a5271cd94be6db0fb7c79 407 Pfam PF00990 Diguanylate cyclase, GGDEF domain 245 397 4.7E-45 T 18-10-2018 IPR000160 GGDEF domain RU84_02545 a3919164593a5271cd94be6db0fb7c79 407 Gene3D G3DSA:3.30.70.270 229 403 2.0E-50 T 18-10-2018 RU84_02545 a3919164593a5271cd94be6db0fb7c79 407 SMART SM00267 234 403 1.1E-53 T 18-10-2018 IPR000160 GGDEF domain RU84_02545 a3919164593a5271cd94be6db0fb7c79 407 SUPERFAMILY SSF55073 250 402 1.73E-41 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_02545 a3919164593a5271cd94be6db0fb7c79 407 Pfam PF17152 Periplasmic sensor domain 43 141 4.2E-17 T 18-10-2018 IPR033417 Periplasmic sensor domain CHASE8 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 709 755 1.83E-5 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 785 830 1.44E-9 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 568 628 1.1E-12 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 835 890 5.8E-11 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 629 695 7.2E-12 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 891 961 3.0E-14 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 775 834 4.4E-15 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 1023 1071 5.7E-12 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 962 1022 2.7E-13 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 639 683 4.97E-8 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01464 Transglycosylase SLT domain 139 241 1.2E-23 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 152 180 - T 18-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:3.10.350.10 700 767 6.7E-8 T 18-10-2018 IPR036779 LysM domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 903 946 8.63E-9 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 711 755 2.2E-6 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 578 618 2.4E-10 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 787 830 1.2E-12 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 1026 1069 6.6E-10 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 904 946 2.7E-11 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 641 683 1.0E-9 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 839 881 9.8E-10 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Pfam PF01476 LysM domain 977 1020 1.1E-10 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 1024 1069 4.45E-8 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 975 1020 1.7E-8 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF53955 131 290 1.02E-41 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 576 620 5.89E-9 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 838 882 4.1E-10 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 786 830 3.8E-15 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 903 947 2.8E-12 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 640 684 1.2E-10 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 710 755 1.1E-4 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 976 1020 2.8E-13 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 1025 1069 5.0E-11 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SMART SM00257 577 621 5.4E-6 T 18-10-2018 IPR018392 LysM domain RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 Gene3D G3DSA:1.10.530.10 129 277 8.1E-31 T 18-10-2018 RU84_12135 1428cd28bf2d48c445636d4bc1e91794 1071 SUPERFAMILY SSF54106 838 881 1.57E-7 T 18-10-2018 RU84_07835 8626b46c10fddffec0a3c9d6d1156082 350 SUPERFAMILY SSF51569 15 342 5.02E-114 T 18-10-2018 RU84_07835 8626b46c10fddffec0a3c9d6d1156082 350 Gene3D G3DSA:3.20.20.70 10 345 1.2E-134 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_07835 8626b46c10fddffec0a3c9d6d1156082 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 16 343 6.7E-127 T 18-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RU84_07835 8626b46c10fddffec0a3c9d6d1156082 350 PIRSF PIRSF001361 3 347 9.8E-137 T 18-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RU84_07835 8626b46c10fddffec0a3c9d6d1156082 350 Pfam PF00793 DAHP synthetase I family 43 333 3.9E-82 T 18-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_02755 07ac1962b2b79187391c0b2d7a721c0c 912 Pfam PF13155 Toprim-like 177 273 2.0E-12 T 18-10-2018 RU84_02755 07ac1962b2b79187391c0b2d7a721c0c 912 Gene3D G3DSA:3.40.1360.10 166 284 1.4E-10 T 18-10-2018 RU84_02755 07ac1962b2b79187391c0b2d7a721c0c 912 SUPERFAMILY SSF56731 169 259 6.28E-7 T 18-10-2018 RU84_02965 6dcc1e01e3c044ffff83dbbd73af5bf9 296 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 6 289 3.1E-155 T 18-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 RU84_02965 6dcc1e01e3c044ffff83dbbd73af5bf9 296 Pfam PF00483 Nucleotidyl transferase 6 240 2.8E-69 T 18-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RU84_02965 6dcc1e01e3c044ffff83dbbd73af5bf9 296 Gene3D G3DSA:3.90.550.10 1 295 1.2E-85 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_02965 6dcc1e01e3c044ffff83dbbd73af5bf9 296 SUPERFAMILY SSF53448 5 290 2.01E-89 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_08510 b0c3da586e15a97dbe8e1d7b455398a2 387 SUPERFAMILY SSF55729 8 141 1.47E-7 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_08510 b0c3da586e15a97dbe8e1d7b455398a2 387 Gene3D G3DSA:3.40.630.30 6 143 3.2E-5 T 18-10-2018 RU84_17410 190800984e4c1821e61457a677e2eddf 134 SMART SM00422 1 69 3.3E-14 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_17410 190800984e4c1821e61457a677e2eddf 134 Gene3D G3DSA:1.10.1660.10 1 118 3.5E-23 T 18-10-2018 RU84_17410 190800984e4c1821e61457a677e2eddf 134 SUPERFAMILY SSF46955 1 120 4.4E-23 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_17410 190800984e4c1821e61457a677e2eddf 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 7.4E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_17410 190800984e4c1821e61457a677e2eddf 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 7.4E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_17410 190800984e4c1821e61457a677e2eddf 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 7.4E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_17410 190800984e4c1821e61457a677e2eddf 134 Pfam PF13411 MerR HTH family regulatory protein 1 67 9.9E-14 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 SUPERFAMILY SSF52172 7 185 3.13E-38 T 18-10-2018 IPR011006 CheY-like superfamily RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 18-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Pfam PF00072 Response regulator receiver domain 8 117 2.6E-23 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Gene3D G3DSA:3.40.50.300 130 310 1.9E-59 T 18-10-2018 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Gene3D G3DSA:1.10.10.60 399 468 2.3E-15 T 18-10-2018 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Gene3D G3DSA:1.10.8.60 311 377 1.3E-22 T 18-10-2018 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 SUPERFAMILY SSF46689 354 466 1.04E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 2.8E-10 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 2.8E-10 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 SMART SM00382 160 303 1.7E-6 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 SUPERFAMILY SSF52540 140 383 2.0E-64 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Gene3D G3DSA:3.40.50.2300 1 129 5.6E-29 T 18-10-2018 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 SMART SM00448 6 117 6.4E-29 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Pfam PF02954 Bacterial regulatory protein, Fis family 423 463 4.5E-14 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 18-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 Pfam PF00158 Sigma-54 interaction domain 140 306 1.9E-65 T 18-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RU84_17215 d6060dd88c3ab0b42fbcc7791c2e838d 473 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 18-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 SMART SM00346 23 111 8.1E-17 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 Gene3D G3DSA:3.30.450.40 91 270 7.2E-50 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 SUPERFAMILY SSF46785 26 93 2.5E-10 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 SUPERFAMILY SSF55781 92 270 4.97E-41 T 18-10-2018 RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 19 270 3.2E-96 T 18-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 Pfam PF01614 Bacterial transcriptional regulator 144 267 4.9E-42 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 Gene3D G3DSA:1.10.10.10 8 88 1.9E-15 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07995 10849b5d3bb76342d92b15e69e67430c 270 Pfam PF09339 IclR helix-turn-helix domain 27 76 2.2E-12 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_16850 ef9e4dc7132e9e5d7bf9290be7068830 264 SUPERFAMILY SSF54637 118 262 8.2E-22 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_16850 ef9e4dc7132e9e5d7bf9290be7068830 264 Gene3D G3DSA:3.10.129.90 8 263 1.2E-59 T 18-10-2018 RU84_16850 ef9e4dc7132e9e5d7bf9290be7068830 264 Pfam PF13622 Thioesterase-like superfamily 19 262 4.5E-41 T 18-10-2018 RU84_16850 ef9e4dc7132e9e5d7bf9290be7068830 264 SUPERFAMILY SSF54637 5 107 5.87E-17 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 164 179 2.1E-24 T 18-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 214 226 2.1E-24 T 18-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 49 71 2.1E-24 T 18-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 181 203 2.1E-24 T 18-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 Gene3D G3DSA:1.10.240.10 221 329 3.4E-30 T 18-10-2018 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 5 402 45.598 T 18-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 8 401 1.2E-114 T 18-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 Gene3D G3DSA:3.40.50.620 7 220 4.5E-77 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 45 55 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 SUPERFAMILY SSF55174 327 402 1.44E-9 T 18-10-2018 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 SUPERFAMILY SSF52374 8 313 2.4E-95 T 18-10-2018 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 Gene3D G3DSA:3.10.290.10 330 402 1.9E-7 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_00070 5867362854f3a29aefd221c23ad8c47f 404 Pfam PF00579 tRNA synthetases class I (W and Y) 33 314 4.5E-76 T 18-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_13690 472f6507683394a1b65689aac1cea0b0 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 220 6.1E-24 T 18-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RU84_13690 472f6507683394a1b65689aac1cea0b0 301 Gene3D G3DSA:3.40.50.720 4 300 7.6E-71 T 18-10-2018 RU84_13690 472f6507683394a1b65689aac1cea0b0 301 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 5 294 3.6E-87 T 18-10-2018 IPR010099 Epimerase family protein SDR39U1 RU84_13690 472f6507683394a1b65689aac1cea0b0 301 Pfam PF08338 Domain of unknown function (DUF1731) 252 297 2.1E-14 T 18-10-2018 IPR013549 Domain of unknown function DUF1731 RU84_13690 472f6507683394a1b65689aac1cea0b0 301 SUPERFAMILY SSF51735 3 261 1.51E-39 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 155 182 - T 18-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 SUPERFAMILY SSF51735 109 296 2.23E-56 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 SUPERFAMILY SSF55021 333 409 2.24E-19 T 18-10-2018 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 SUPERFAMILY SSF52283 9 135 1.02E-49 T 18-10-2018 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 Gene3D G3DSA:3.30.70.260 329 409 1.5E-30 T 18-10-2018 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 Gene3D G3DSA:3.40.50.720 110 298 1.0E-107 T 18-10-2018 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 121 295 7.9E-52 T 18-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 327 3.3E-36 T 18-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RU84_01645 f5d6c20413b74622b9105552ef9040dd 410 Gene3D G3DSA:3.40.50.720 15 313 1.0E-107 T 18-10-2018 RU84_15045 94a00ab96bb8c9349b3812090a78bdae 483 Gene3D G3DSA:3.40.50.1460 291 467 1.1E-9 T 18-10-2018 RU84_15045 94a00ab96bb8c9349b3812090a78bdae 483 Pfam PF01650 Peptidase C13 family 233 440 8.2E-42 T 18-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 RU84_15045 94a00ab96bb8c9349b3812090a78bdae 483 SUPERFAMILY SSF52129 286 423 1.31E-7 T 18-10-2018 IPR029030 Caspase-like domain superfamily RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 14 569 2.6E-260 T 18-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 46 151 2.3E-14 T 18-10-2018 IPR007831 General secretory system II, protein E, N-terminal RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 SUPERFAMILY SSF160246 6 147 1.05E-29 T 18-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 387 401 - T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 Gene3D G3DSA:3.30.450.90 157 292 6.7E-48 T 18-10-2018 RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 Pfam PF00437 Type II/IV secretion system protein 193 459 2.4E-90 T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 Gene3D G3DSA:3.40.50.300 295 570 3.1E-105 T 18-10-2018 RU84_16760 81dd35549a56c715026a0a5c6aeb32a5 570 SUPERFAMILY SSF52540 182 568 2.97E-99 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15700 6ffdf06202746b50251432d460229836 270 Pfam PF01026 TatD related DNase 4 267 5.0E-57 T 18-10-2018 IPR001130 TatD family GO:0016788 RU84_15700 6ffdf06202746b50251432d460229836 270 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 18-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RU84_15700 6ffdf06202746b50251432d460229836 270 SUPERFAMILY SSF51556 3 268 4.63E-68 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_15700 6ffdf06202746b50251432d460229836 270 PIRSF PIRSF005902 1 270 3.7E-57 T 18-10-2018 IPR001130 TatD family GO:0016788 RU84_15700 6ffdf06202746b50251432d460229836 270 Gene3D G3DSA:3.20.20.140 1 268 3.1E-69 T 18-10-2018 RU84_08210 9934ed1c4a0772f8371b29621ec77d22 401 Gene3D G3DSA:3.50.50.100 1 382 6.9E-76 T 18-10-2018 RU84_08210 9934ed1c4a0772f8371b29621ec77d22 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 2.1E-11 T 18-10-2018 RU84_08210 9934ed1c4a0772f8371b29621ec77d22 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.1E-11 T 18-10-2018 RU84_08210 9934ed1c4a0772f8371b29621ec77d22 401 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.1E-11 T 18-10-2018 RU84_08210 9934ed1c4a0772f8371b29621ec77d22 401 SUPERFAMILY SSF51905 1 328 2.66E-29 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08210 9934ed1c4a0772f8371b29621ec77d22 401 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 313 2.0E-43 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_07580 b5817f6195b551d76944590d85e19fb5 484 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 18-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 RU84_07580 b5817f6195b551d76944590d85e19fb5 484 Pfam PF00916 Sulfate permease family 14 142 2.3E-27 T 18-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RU84_07580 b5817f6195b551d76944590d85e19fb5 484 SUPERFAMILY SSF52091 392 481 1.08E-11 T 18-10-2018 IPR036513 STAS domain superfamily RU84_07580 b5817f6195b551d76944590d85e19fb5 484 Gene3D G3DSA:3.30.750.24 388 482 3.8E-27 T 18-10-2018 IPR036513 STAS domain superfamily RU84_07580 b5817f6195b551d76944590d85e19fb5 484 Pfam PF01740 STAS domain 401 483 4.3E-9 T 18-10-2018 IPR002645 STAS domain RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 SMART SM00116 67 117 0.41 T 18-10-2018 IPR000644 CBS domain RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 SMART SM00116 131 179 19.0 T 18-10-2018 IPR000644 CBS domain RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 SUPERFAMILY SSF56176 206 278 3.27E-14 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 SUPERFAMILY SSF54631 55 191 5.49E-32 T 18-10-2018 RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 SMART SM01091 201 279 5.9E-12 T 18-10-2018 IPR005170 Transporter-associated domain RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 Pfam PF03471 Transporter associated domain 206 278 5.5E-15 T 18-10-2018 IPR005170 Transporter-associated domain RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 Gene3D G3DSA:3.10.580.10 38 190 2.0E-51 T 18-10-2018 RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 Gene3D G3DSA:3.30.465.10 201 278 7.7E-19 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 Pfam PF00571 CBS domain 59 116 4.1E-5 T 18-10-2018 IPR000644 CBS domain RU84_16535 a09b464489c6f41b02c24eb8939cdd56 279 Pfam PF00571 CBS domain 126 179 6.9E-7 T 18-10-2018 IPR000644 CBS domain RU84_04950 07744a0d249b4b231630c2c10d85f211 567 SUPERFAMILY SSF50156 461 548 3.28E-7 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_04950 07744a0d249b4b231630c2c10d85f211 567 Pfam PF05299 M61 glycyl aminopeptidase 268 384 5.4E-47 T 18-10-2018 IPR007963 Peptidase M61, catalytic domain RU84_04950 07744a0d249b4b231630c2c10d85f211 567 SUPERFAMILY SSF55486 180 436 4.03E-15 T 18-10-2018 RU84_04950 07744a0d249b4b231630c2c10d85f211 567 PIRSF PIRSF016493 1 567 1.1E-193 T 18-10-2018 IPR024191 Peptidase M61 RU84_04950 07744a0d249b4b231630c2c10d85f211 567 Gene3D G3DSA:2.60.40.3650 1 172 3.2E-55 T 18-10-2018 RU84_04950 07744a0d249b4b231630c2c10d85f211 567 Gene3D G3DSA:1.10.390.60 175 445 1.0E-100 T 18-10-2018 RU84_04950 07744a0d249b4b231630c2c10d85f211 567 Gene3D G3DSA:2.30.42.10 468 567 3.1E-13 T 18-10-2018 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 197 275 2.8E-27 T 18-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 Pfam PF12833 Helix-turn-helix domain 33 109 2.0E-15 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 Gene3D G3DSA:3.30.160.70 107 194 4.9E-18 T 18-10-2018 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 SUPERFAMILY SSF53155 115 193 9.22E-15 T 18-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 SMART SM00342 26 108 1.4E-16 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 246 252 - T 18-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 SUPERFAMILY SSF46767 195 275 2.09E-28 T 18-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 Gene3D G3DSA:1.10.10.60 10 106 5.2E-18 T 18-10-2018 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 196 275 2.6E-30 T 18-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 SUPERFAMILY SSF46689 11 60 4.3E-9 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_16840 f3fd751eab14b97f88a206eb0a0e92e3 284 Gene3D G3DSA:1.10.10.10 195 280 1.2E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Gene3D G3DSA:3.40.50.300 53 313 3.9E-111 T 18-10-2018 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 407 1.6E-204 T 18-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 SUPERFAMILY SSF52540 58 398 1.2E-74 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 SUPERFAMILY SSF57716 9 44 1.71E-10 T 18-10-2018 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 SMART SM00382 110 331 1.6E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 SMART SM01086 315 409 3.9E-33 T 18-10-2018 IPR019489 Clp ATPase, C-terminal RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 315 390 6.4E-15 T 18-10-2018 IPR019489 Clp ATPase, C-terminal RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 SMART SM00994 8 47 1.4E-19 T 18-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 413 52.65 T 18-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Gene3D G3DSA:1.10.8.60 314 422 2.9E-38 T 18-10-2018 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Pfam PF07724 AAA domain (Cdc48 subfamily) 111 309 2.9E-51 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Gene3D G3DSA:3.30.50.30 2 47 9.4E-17 T 18-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily RU84_15965 c2107d37a309bc9985ab25d26041d22d 437 Pfam PF06689 ClpX C4-type zinc finger 9 45 1.8E-17 T 18-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 RU84_05450 897a933c7d1527f355eb2bbce8cddc99 231 SUPERFAMILY SSF160443 143 219 2.75E-13 T 18-10-2018 IPR036063 Smr domain superfamily RU84_05450 897a933c7d1527f355eb2bbce8cddc99 231 Pfam PF01713 Smr domain 143 219 8.5E-20 T 18-10-2018 IPR002625 Smr domain RU84_05450 897a933c7d1527f355eb2bbce8cddc99 231 Gene3D G3DSA:3.30.1370.110 95 224 7.4E-33 T 18-10-2018 RU84_05450 897a933c7d1527f355eb2bbce8cddc99 231 SMART SM00463 138 219 1.0E-8 T 18-10-2018 IPR002625 Smr domain RU84_01565 285fc6d071a70a7d3c55599ad408ac81 333 SUPERFAMILY SSF54523 13 89 4.55E-5 T 18-10-2018 RU84_01565 285fc6d071a70a7d3c55599ad408ac81 333 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 33 1.1E-6 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01565 285fc6d071a70a7d3c55599ad408ac81 333 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 32 1.1E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01565 285fc6d071a70a7d3c55599ad408ac81 333 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01565 285fc6d071a70a7d3c55599ad408ac81 333 Pfam PF16074 Type IV Pilus-assembly protein W 181 327 7.7E-12 T 18-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 RU84_14100 f546fdde65694d66c9424f3408398bbd 442 Gene3D G3DSA:3.30.2400.10 206 423 2.0E-16 T 18-10-2018 RU84_14100 f546fdde65694d66c9424f3408398bbd 442 Gene3D G3DSA:3.30.2320.10 291 384 2.0E-16 T 18-10-2018 RU84_14100 f546fdde65694d66c9424f3408398bbd 442 Pfam PF05065 Phage capsid family 175 423 1.3E-27 T 18-10-2018 IPR024455 Phage capsid RU84_14100 f546fdde65694d66c9424f3408398bbd 442 SUPERFAMILY SSF56563 168 441 5.1E-34 T 18-10-2018 RU84_14100 f546fdde65694d66c9424f3408398bbd 442 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 9 400 2.9E-29 T 18-10-2018 IPR024455 Phage capsid RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.2E-24 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 6.2E-15 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 6.2E-15 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 6.2E-15 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 6.2E-15 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 Gene3D G3DSA:1.20.5.1150 16 54 1.2E-20 T 18-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 18-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 Pfam PF01165 Ribosomal protein S21 3 55 4.1E-22 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 44 5.0E-10 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06020 c349c11dd68e8fcbfad6a09541def5d4 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.252 T 18-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 SUPERFAMILY SSF51735 5 235 1.28E-60 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 Pfam PF00106 short chain dehydrogenase 5 190 9.2E-47 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 Gene3D G3DSA:3.40.50.720 2 231 7.5E-57 T 18-10-2018 RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 4.4E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 4.4E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 4.4E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 5.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 5.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15390 6f66c218783bf66ff6f7a66b014e59fa 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 216 5.1E-23 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_18125 a956651e73267f65636ac26000d746c8 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 1.0E-7 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_18125 a956651e73267f65636ac26000d746c8 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 1.0E-7 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_18125 a956651e73267f65636ac26000d746c8 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 1.0E-7 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_18125 a956651e73267f65636ac26000d746c8 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 1.0E-7 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_18125 a956651e73267f65636ac26000d746c8 232 Gene3D G3DSA:1.10.150.240 16 84 3.1E-51 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_18125 a956651e73267f65636ac26000d746c8 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 184 1.5E-35 T 18-10-2018 RU84_18125 a956651e73267f65636ac26000d746c8 232 Gene3D G3DSA:3.40.50.1000 4 191 3.1E-51 T 18-10-2018 IPR023214 HAD superfamily RU84_18125 a956651e73267f65636ac26000d746c8 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 87 178 3.6E-10 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_18125 a956651e73267f65636ac26000d746c8 232 SUPERFAMILY SSF56784 1 217 1.22E-54 T 18-10-2018 IPR036412 HAD-like superfamily RU84_18125 a956651e73267f65636ac26000d746c8 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 184 9.8E-10 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_00270 291b44eabac63cd9cad5c18cbfb6eea1 152 PIRSF PIRSF006173 3 152 3.0E-65 T 18-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 RU84_00270 291b44eabac63cd9cad5c18cbfb6eea1 152 Pfam PF03692 Putative zinc- or iron-chelating domain 29 97 2.6E-9 T 18-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein RU84_00270 291b44eabac63cd9cad5c18cbfb6eea1 152 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 7 152 37.341 T 18-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 RU84_03870 b6ab2c17324c7b4b7f337d0b021bbb7e 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 385 8.2E-110 T 18-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RU84_03870 b6ab2c17324c7b4b7f337d0b021bbb7e 394 Gene3D G3DSA:3.40.50.1970 1 188 7.8E-57 T 18-10-2018 RU84_03870 b6ab2c17324c7b4b7f337d0b021bbb7e 394 SUPERFAMILY SSF56796 5 394 9.81E-112 T 18-10-2018 RU84_03870 b6ab2c17324c7b4b7f337d0b021bbb7e 394 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_03870 b6ab2c17324c7b4b7f337d0b021bbb7e 394 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 177 205 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_03870 b6ab2c17324c7b4b7f337d0b021bbb7e 394 Gene3D G3DSA:1.20.1090.10 190 394 8.5E-60 T 18-10-2018 RU84_06665 b8a29379e8d492c9b2776769b7cdff79 547 ProSitePatterns PS00455 Putative AMP-binding domain signature. 191 202 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_06665 b8a29379e8d492c9b2776769b7cdff79 547 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 527 3.5E-22 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_06665 b8a29379e8d492c9b2776769b7cdff79 547 Gene3D G3DSA:3.40.50.12780 21 436 5.5E-92 T 18-10-2018 RU84_06665 b8a29379e8d492c9b2776769b7cdff79 547 Pfam PF00501 AMP-binding enzyme 41 440 4.8E-70 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_06665 b8a29379e8d492c9b2776769b7cdff79 547 SUPERFAMILY SSF56801 30 543 2.62E-129 T 18-10-2018 RU84_06665 b8a29379e8d492c9b2776769b7cdff79 547 Gene3D G3DSA:3.30.300.30 437 547 4.6E-27 T 18-10-2018 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 Pfam PF09278 MerR, DNA binding 45 106 3.2E-15 T 18-10-2018 IPR015358 Transcription regulator MerR, DNA binding RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 SUPERFAMILY SSF46955 1 125 2.05E-35 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.3E-48 T 18-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 Gene3D G3DSA:1.10.1660.10 1 125 1.4E-33 T 18-10-2018 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.7E-11 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.7E-11 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.7E-11 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 Pfam PF00376 MerR family regulatory protein 2 39 1.7E-16 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 SMART SM00422 1 70 4.1E-29 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_11250 2a25ff2a92f076a378b5aa599d111cb1 133 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_11415 d8cc0105ec49d1898a7fde8ff25c7c96 411 SUPERFAMILY SSF51556 53 363 1.46E-71 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_11415 d8cc0105ec49d1898a7fde8ff25c7c96 411 Gene3D G3DSA:3.20.20.140 53 364 2.7E-83 T 18-10-2018 RU84_11415 d8cc0105ec49d1898a7fde8ff25c7c96 411 SUPERFAMILY SSF51338 5 409 4.78E-11 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_11415 d8cc0105ec49d1898a7fde8ff25c7c96 411 Gene3D G3DSA:2.30.40.10 10 409 2.7E-83 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 Gene3D G3DSA:3.40.190.10 91 291 1.6E-63 T 18-10-2018 RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 SUPERFAMILY SSF46785 3 111 2.92E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 Gene3D G3DSA:1.10.10.10 3 89 8.2E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 Gene3D G3DSA:3.40.190.10 163 266 1.6E-63 T 18-10-2018 RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 SUPERFAMILY SSF53850 89 298 1.05E-44 T 18-10-2018 RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.4E-16 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10190 0e3f5252ebab3be2ce0d567a7f65e877 306 Pfam PF03466 LysR substrate binding domain 89 292 6.1E-42 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 TIGRFAM TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364 7 376 3.0E-89 T 18-10-2018 IPR017741 FAD-dependent oxidoreductase, HpnW RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 Gene3D G3DSA:3.30.9.10 87 343 1.2E-40 T 18-10-2018 RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 Pfam PF01266 FAD dependent oxidoreductase 7 374 7.6E-35 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 1.1E-5 T 18-10-2018 RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.1E-5 T 18-10-2018 RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 Gene3D G3DSA:3.50.50.60 8 374 1.2E-40 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10545 1cd150e5663b43a99b87ecbf6e76e1b4 384 SUPERFAMILY SSF51905 5 218 1.68E-36 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02650 e258b0c4336090856907380c4ebba6ec 303 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 281 7.0E-62 T 18-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 SUPERFAMILY SSF54292 242 341 1.11E-13 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 SUPERFAMILY SSF52343 118 241 3.4E-23 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 Gene3D G3DSA:2.40.30.10 28 127 2.3E-12 T 18-10-2018 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 Pfam PF00970 Oxidoreductase FAD-binding domain 36 127 6.6E-7 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 Gene3D G3DSA:3.10.20.30 257 341 5.7E-10 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 SUPERFAMILY SSF63380 24 131 1.25E-17 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 PRINTS PR00409 Phthalate dioxygenase reductase family signature 137 156 3.1E-6 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 PRINTS PR00409 Phthalate dioxygenase reductase family signature 115 129 3.1E-6 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 PRINTS PR00409 Phthalate dioxygenase reductase family signature 218 226 3.1E-6 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 Gene3D G3DSA:3.40.50.80 128 255 9.5E-26 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_18100 8de547aa4faecc9c774c4599662b9cb5 341 Pfam PF00175 Oxidoreductase NAD-binding domain 138 231 5.2E-11 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_03770 c71a5e08b32a2edbdfafc5ef77941da6 144 Gene3D G3DSA:3.10.450.50 3 138 4.8E-19 T 18-10-2018 RU84_03770 c71a5e08b32a2edbdfafc5ef77941da6 144 SUPERFAMILY SSF54427 1 129 1.47E-19 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_03770 c71a5e08b32a2edbdfafc5ef77941da6 144 Pfam PF13577 SnoaL-like domain 4 121 1.0E-11 T 18-10-2018 IPR037401 SnoaL-like domain RU84_15790 b6f8ac25343267223bd20784237da433 267 Gene3D G3DSA:3.40.50.720 1 267 2.0E-66 T 18-10-2018 RU84_15790 b6f8ac25343267223bd20784237da433 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 255 6.5E-88 T 18-10-2018 RU84_15790 b6f8ac25343267223bd20784237da433 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 2.8E-7 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15790 b6f8ac25343267223bd20784237da433 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.8E-7 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15790 b6f8ac25343267223bd20784237da433 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.8E-7 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15790 b6f8ac25343267223bd20784237da433 267 PIRSF PIRSF000094 3 263 1.2E-113 T 18-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RU84_15790 b6f8ac25343267223bd20784237da433 267 SUPERFAMILY SSF51735 8 258 1.43E-64 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 159 2.0E-46 T 18-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 PIRSF PIRSF000103 1 290 3.4E-72 T 18-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 Gene3D G3DSA:3.40.50.720 1 161 1.2E-47 T 18-10-2018 RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 SUPERFAMILY SSF48179 162 288 5.67E-33 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 SUPERFAMILY SSF51735 2 160 9.78E-45 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 Gene3D G3DSA:1.10.1040.10 162 289 4.1E-36 T 18-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RU84_08420 f65db0d627523dd3d7e214e6467510e6 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 282 6.2E-29 T 18-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RU84_05485 7c87f2fcdf2bbf866f3670ec0bcf7cbf 513 SUPERFAMILY SSF103473 16 497 3.31E-29 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_05485 7c87f2fcdf2bbf866f3670ec0bcf7cbf 513 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 499 4.9E-117 T 18-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 RU84_05485 7c87f2fcdf2bbf866f3670ec0bcf7cbf 513 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 154 166 - T 18-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RU84_05485 7c87f2fcdf2bbf866f3670ec0bcf7cbf 513 Gene3D G3DSA:1.20.1250.20 4 499 8.0E-142 T 18-10-2018 RU84_05485 7c87f2fcdf2bbf866f3670ec0bcf7cbf 513 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 78 102 - T 18-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 RU84_05485 7c87f2fcdf2bbf866f3670ec0bcf7cbf 513 Pfam PF00854 POT family 90 463 1.1E-64 T 18-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 RU84_06670 cbd5b13531d5c3781e19c19fc1f92b03 192 SMART SM00903 16 158 1.3E-15 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_06670 cbd5b13531d5c3781e19c19fc1f92b03 192 Pfam PF01613 Flavin reductase like domain 21 160 9.1E-18 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_06670 cbd5b13531d5c3781e19c19fc1f92b03 192 Gene3D G3DSA:2.30.110.10 1 191 4.5E-50 T 18-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RU84_06670 cbd5b13531d5c3781e19c19fc1f92b03 192 SUPERFAMILY SSF50475 6 188 6.87E-39 T 18-10-2018 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 SUPERFAMILY SSF55021 340 416 2.41E-25 T 18-10-2018 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 Gene3D G3DSA:3.30.2130.10 258 423 7.4E-61 T 18-10-2018 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 Pfam PF00696 Amino acid kinase family 3 229 3.1E-51 T 18-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 18-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 PIRSF PIRSF000726 1 62 1.4E-20 T 18-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 PIRSF PIRSF000726 55 422 4.4E-139 T 18-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 SUPERFAMILY SSF53633 4 254 1.44E-76 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 Pfam PF01842 ACT domain 279 336 1.7E-11 T 18-10-2018 IPR002912 ACT domain RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 414 5.4E-131 T 18-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 59 414 1.1E-112 T 18-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 Pfam PF13840 ACT domain 348 410 2.7E-18 T 18-10-2018 IPR027795 CASTOR, ACT domain RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 SUPERFAMILY SSF55021 260 338 1.55E-17 T 18-10-2018 RU84_11515 f6a7f8d5a44cbc4c9a8447879c2b2997 426 Gene3D G3DSA:3.40.1160.10 1 257 1.5E-87 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_10780 1ac3399dd7e7de5b6f9a169260f0cd31 523 Gene3D G3DSA:1.20.1740.10 3 463 1.9E-71 T 18-10-2018 RU84_10780 1ac3399dd7e7de5b6f9a169260f0cd31 523 PIRSF PIRSF006060 1 460 4.3E-73 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_10780 1ac3399dd7e7de5b6f9a169260f0cd31 523 PIRSF PIRSF006060 439 516 90.0 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_10780 1ac3399dd7e7de5b6f9a169260f0cd31 523 Pfam PF13520 Amino acid permease 9 467 3.0E-43 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 Hamap MF_00268 Protein RecA [recA]. 5 329 51.762 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 ProSitePatterns PS00321 recA signature. 213 221 - T 18-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 PRINTS PR00142 RecA protein signature 210 238 9.2E-82 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 PRINTS PR00142 RecA protein signature 165 194 9.2E-82 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 PRINTS PR00142 RecA protein signature 243 272 9.2E-82 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 PRINTS PR00142 RecA protein signature 297 314 9.2E-82 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 PRINTS PR00142 RecA protein signature 93 122 9.2E-82 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 PRINTS PR00142 RecA protein signature 127 156 9.2E-82 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 5.1E-172 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 Gene3D G3DSA:3.30.250.10 269 327 9.0E-25 T 18-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 SMART SM00382 57 228 3.6E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 Gene3D G3DSA:3.40.50.300 26 267 7.7E-85 T 18-10-2018 RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 SUPERFAMILY SSF54752 269 325 6.15E-20 T 18-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 SUPERFAMILY SSF52540 4 266 5.55E-69 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07520 8e71874b27f022cdea4635f8e2996eb8 349 Pfam PF00154 recA bacterial DNA recombination protein 7 267 3.2E-148 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_11030 fa673c62d5ea8333690527299db256fd 881 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 13 876 0.0 T 18-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Gene3D G3DSA:3.40.1170.10 5 126 8.4E-49 T 18-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RU84_11030 fa673c62d5ea8333690527299db256fd 881 PIRSF PIRSF037677 7 850 1.6E-149 T 18-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Pfam PF05192 MutS domain III 281 572 1.5E-35 T 18-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Pfam PF01624 MutS domain I 14 124 2.8E-41 T 18-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Pfam PF05190 MutS family domain IV 441 531 2.7E-31 T 18-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 13 871 24.093 T 18-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Gene3D G3DSA:3.40.50.300 581 880 7.2E-98 T 18-10-2018 RU84_11030 fa673c62d5ea8333690527299db256fd 881 SUPERFAMILY SSF52540 580 810 1.86E-54 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11030 fa673c62d5ea8333690527299db256fd 881 SUPERFAMILY SSF55271 7 120 6.28E-40 T 18-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 RU84_11030 fa673c62d5ea8333690527299db256fd 881 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 701 717 - T 18-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Gene3D G3DSA:1.10.1420.10 400 516 9.8E-97 T 18-10-2018 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Pfam PF00488 MutS domain V 624 808 2.1E-80 T 18-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 SMART SM00534 620 806 1.3E-111 T 18-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Pfam PF05188 MutS domain II 141 264 2.6E-21 T 18-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 SUPERFAMILY SSF53150 119 277 3.79E-37 T 18-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 Gene3D G3DSA:1.10.1420.10 277 572 9.8E-97 T 18-10-2018 RU84_11030 fa673c62d5ea8333690527299db256fd 881 SMART SM00533 293 604 1.4E-98 T 18-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 RU84_11030 fa673c62d5ea8333690527299db256fd 881 SUPERFAMILY SSF48334 278 579 4.05E-83 T 18-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily RU84_11030 fa673c62d5ea8333690527299db256fd 881 Gene3D G3DSA:3.30.420.110 134 272 2.3E-35 T 18-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 SUPERFAMILY SSF52402 1 146 5.61E-36 T 18-10-2018 RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 Gene3D G3DSA:3.40.50.620 1 147 6.2E-36 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 Pfam PF00582 Universal stress protein family 3 146 4.2E-29 T 18-10-2018 IPR006016 UspA RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 PRINTS PR01438 Universal stress protein signature 106 118 1.6E-18 T 18-10-2018 IPR006015 Universal stress protein A RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 PRINTS PR01438 Universal stress protein signature 3 21 1.6E-18 T 18-10-2018 IPR006015 Universal stress protein A RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 PRINTS PR01438 Universal stress protein signature 124 146 1.6E-18 T 18-10-2018 IPR006015 Universal stress protein A RU84_07065 115f25391cc6ba16a4c9dbf72afeee98 147 PIRSF PIRSF006276 1 147 3.3E-22 T 18-10-2018 IPR006015 Universal stress protein A RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 60 162 2.4E-11 T 18-10-2018 IPR007831 General secretory system II, protein E, N-terminal RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 SUPERFAMILY SSF160246 63 160 1.18E-7 T 18-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 402 416 - T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 Gene3D G3DSA:3.30.450.90 169 307 7.8E-42 T 18-10-2018 RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 SUPERFAMILY SSF52540 195 582 1.06E-93 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 Gene3D G3DSA:3.40.50.300 311 583 1.5E-106 T 18-10-2018 RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 SMART SM00382 335 477 0.0065 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05805 01affa12b7b1add66b6a10b82b64eb43 585 Pfam PF00437 Type II/IV secretion system protein 214 474 3.8E-78 T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_05400 bec57cfa75a0870ae90d8f6a14885e55 415 Gene3D G3DSA:2.40.440.10 224 415 3.2E-43 T 18-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RU84_05400 bec57cfa75a0870ae90d8f6a14885e55 415 Pfam PF03734 L,D-transpeptidase catalytic domain 283 410 2.9E-18 T 18-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 RU84_05400 bec57cfa75a0870ae90d8f6a14885e55 415 Pfam PF01471 Putative peptidoglycan binding domain 147 192 3.1E-9 T 18-10-2018 IPR002477 Peptidoglycan binding-like RU84_05400 bec57cfa75a0870ae90d8f6a14885e55 415 SUPERFAMILY SSF47090 145 195 1.37E-11 T 18-10-2018 IPR036365 PGBD-like superfamily RU84_05400 bec57cfa75a0870ae90d8f6a14885e55 415 SUPERFAMILY SSF141523 283 411 4.84E-27 T 18-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like RU84_05400 bec57cfa75a0870ae90d8f6a14885e55 415 Gene3D G3DSA:1.10.101.10 141 203 5.4E-10 T 18-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 SMART SM00563 317 444 9.8E-26 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 PIRSF PIRSF000437 31 841 4.6E-232 T 18-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 23 832 23.893 T 18-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 32 823 0.0 T 18-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 SUPERFAMILY SSF69593 258 500 2.22E-25 T 18-10-2018 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 Pfam PF01553 Acyltransferase 300 441 1.6E-20 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_01955 01022c50a8cbd8c4b66379dd7f640b76 857 PIRSF PIRSF500064 10 839 8.5E-237 T 18-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 RU84_06970 74b862c6b862a00f04918f2b260b1dd3 185 Pfam PF01817 Chorismate mutase type II 36 103 6.6E-8 T 18-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_06970 74b862c6b862a00f04918f2b260b1dd3 185 Gene3D G3DSA:1.20.140.170 30 184 4.5E-56 T 18-10-2018 RU84_06970 74b862c6b862a00f04918f2b260b1dd3 185 PIRSF PIRSF026640 4 185 8.7E-49 T 18-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_06970 74b862c6b862a00f04918f2b260b1dd3 185 SUPERFAMILY SSF48600 37 182 9.99E-33 T 18-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_06970 74b862c6b862a00f04918f2b260b1dd3 185 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 28 140 1.8E-37 T 18-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_06970 74b862c6b862a00f04918f2b260b1dd3 185 SMART SM00830 34 105 2.2E-8 T 18-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 SUPERFAMILY SSF51246 329 442 6.28E-41 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 2.4E-37 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 Gene3D G3DSA:3.30.470.20 87 430 1.4E-146 T 18-10-2018 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 Gene3D G3DSA:3.30.1490.20 131 201 1.4E-146 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 320 1.3E-74 T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 Gene3D G3DSA:3.40.50.20 1 85 1.6E-34 T 18-10-2018 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 SUPERFAMILY SSF52440 1 113 1.08E-47 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 SMART SM00878 334 440 5.2E-61 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 SUPERFAMILY SSF56059 83 345 3.36E-67 T 18-10-2018 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 8.8E-44 T 18-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_07260 1fcf11f7e5afe9f1453c61dd7433509a 456 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 444 1.2E-208 T 18-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 RU84_16845 3951a02e7b03de552ff96a2631092760 195 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8 193 6.8E-53 T 18-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RU84_16845 3951a02e7b03de552ff96a2631092760 195 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 63 85 - T 18-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RU84_16845 3951a02e7b03de552ff96a2631092760 195 PIRSF PIRSF000847 4 195 1.4E-46 T 18-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RU84_16845 3951a02e7b03de552ff96a2631092760 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 8 85 1.6E-17 T 18-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RU84_16845 3951a02e7b03de552ff96a2631092760 195 Gene3D G3DSA:1.20.120.1760 5 188 2.1E-13 T 18-10-2018 RU84_05225 647b95718574800678da778caf91c565 74 SUPERFAMILY SSF143800 1 67 4.32E-26 T 18-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_05225 647b95718574800678da778caf91c565 74 Pfam PF01197 Ribosomal protein L31 1 66 4.8E-30 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05225 647b95718574800678da778caf91c565 74 Gene3D G3DSA:2.30.170.50 1 70 3.3E-31 T 18-10-2018 RU84_05225 647b95718574800678da778caf91c565 74 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05225 647b95718574800678da778caf91c565 74 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 30.366 T 18-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05225 647b95718574800678da778caf91c565 74 PRINTS PR01249 Ribosomal protein L31 signature 32 47 4.4E-21 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05225 647b95718574800678da778caf91c565 74 PRINTS PR01249 Ribosomal protein L31 signature 47 65 4.4E-21 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05225 647b95718574800678da778caf91c565 74 PRINTS PR01249 Ribosomal protein L31 signature 2 19 4.4E-21 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05225 647b95718574800678da778caf91c565 74 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 7.0E-33 T 18-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_12150 7a03b73a1ca6d47250b2bb14daa183ba 247 Gene3D G3DSA:3.90.79.20 3 119 2.5E-21 T 18-10-2018 RU84_12150 7a03b73a1ca6d47250b2bb14daa183ba 247 Gene3D G3DSA:3.90.79.10 120 247 3.1E-38 T 18-10-2018 RU84_12150 7a03b73a1ca6d47250b2bb14daa183ba 247 SUPERFAMILY SSF55811 72 239 2.75E-44 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_12150 7a03b73a1ca6d47250b2bb14daa183ba 247 ProSitePatterns PS00893 Nudix box signature. 154 175 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_12150 7a03b73a1ca6d47250b2bb14daa183ba 247 Pfam PF00293 NUDIX domain 126 230 5.4E-17 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_12150 7a03b73a1ca6d47250b2bb14daa183ba 247 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 87 118 2.2E-12 T 18-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 Pfam PF00364 Biotin-requiring enzyme 513 571 9.3E-13 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_10875 f0bc33300559efb447667b1a5a65416f 572 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 324 6.3E-77 T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 6.2E-41 T 18-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 529 546 - T 18-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 SUPERFAMILY SSF56059 84 342 5.66E-58 T 18-10-2018 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 SUPERFAMILY SSF51230 502 571 5.89E-15 T 18-10-2018 IPR011053 Single hybrid motif RU84_10875 f0bc33300559efb447667b1a5a65416f 572 SMART SM00878 336 443 5.8E-53 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 Pfam PF02785 Biotin carboxylase C-terminal domain 336 443 3.6E-35 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 Gene3D G3DSA:2.40.50.100 503 572 2.6E-19 T 18-10-2018 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 SUPERFAMILY SSF51246 331 446 6.28E-37 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_10875 f0bc33300559efb447667b1a5a65416f 572 SUPERFAMILY SSF52440 3 114 5.54E-43 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_10875 f0bc33300559efb447667b1a5a65416f 572 Gene3D G3DSA:3.30.470.130 1 449 1.4E-175 T 18-10-2018 RU84_13050 8aaceeb8d1e12bfbbc56f07b7fa5a267 419 SUPERFAMILY SSF53448 40 324 7.03E-61 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_13050 8aaceeb8d1e12bfbbc56f07b7fa5a267 419 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 12 416 5.0E-182 T 18-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 RU84_13050 8aaceeb8d1e12bfbbc56f07b7fa5a267 419 Gene3D G3DSA:3.90.550.10 31 265 3.3E-42 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_13050 8aaceeb8d1e12bfbbc56f07b7fa5a267 419 Pfam PF13641 Glycosyltransferase like family 2 53 277 8.2E-38 T 18-10-2018 RU84_09640 fdb81963637543637df903c2134decfe 181 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 8.4E-60 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.185 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 3.2E-36 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 3.2E-36 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 3.2E-36 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 3.2E-36 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 3.2E-36 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 154 2.9E-62 T 18-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 RU84_09640 fdb81963637543637df903c2134decfe 181 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 18-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 RU84_09640 fdb81963637543637df903c2134decfe 181 Gene3D G3DSA:3.30.420.10 3 157 5.4E-51 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_09640 fdb81963637543637df903c2134decfe 181 SUPERFAMILY SSF53098 3 155 9.1E-53 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_17515 267abd211191f96831dfc032195e91f0 213 SUPERFAMILY SSF46689 17 83 5.03E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_17515 267abd211191f96831dfc032195e91f0 213 SUPERFAMILY SSF48498 97 210 7.87E-25 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_17515 267abd211191f96831dfc032195e91f0 213 Gene3D G3DSA:1.10.10.60 16 84 1.3E-25 T 18-10-2018 RU84_17515 267abd211191f96831dfc032195e91f0 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 42 72 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_17515 267abd211191f96831dfc032195e91f0 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 73 3.5E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17515 267abd211191f96831dfc032195e91f0 213 Gene3D G3DSA:1.10.357.10 90 211 7.2E-30 T 18-10-2018 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 33 6.6E-11 T 18-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Gene3D G3DSA:1.20.140.10 288 459 3.5E-41 T 18-10-2018 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Gene3D G3DSA:1.10.540.10 17 160 2.1E-20 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 SUPERFAMILY SSF56645 41 280 8.64E-57 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 454 7.1E-20 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Gene3D G3DSA:2.40.110.10 162 287 2.1E-28 T 18-10-2018 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 470 594 1.1E-34 T 18-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 273 5.3E-17 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 158 4.8E-17 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_10435 ebbeb8a08dfa124f46b1d5e9930ab46b 600 SUPERFAMILY SSF47203 288 476 1.93E-46 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_16125 77b1d5df0cc6df9c7663af153865c3d9 569 SUPERFAMILY SSF51735 425 559 1.07E-20 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16125 77b1d5df0cc6df9c7663af153865c3d9 569 Gene3D G3DSA:1.20.1530.20 4 399 1.4E-75 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_16125 77b1d5df0cc6df9c7663af153865c3d9 569 Pfam PF00999 Sodium/hydrogen exchanger family 13 387 4.1E-70 T 18-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RU84_16125 77b1d5df0cc6df9c7663af153865c3d9 569 Pfam PF02254 TrkA-N domain 429 542 1.5E-15 T 18-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RU84_16125 77b1d5df0cc6df9c7663af153865c3d9 569 Gene3D G3DSA:3.40.50.720 423 566 1.6E-24 T 18-10-2018 RU84_15440 05887259854ce62a23d4628363f1a6ee 273 Pfam PF00106 short chain dehydrogenase 3 200 1.6E-36 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 SUPERFAMILY SSF51735 3 239 3.01E-55 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 2.7E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 2.7E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 2.7E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 Gene3D G3DSA:3.40.50.720 2 272 3.3E-68 T 18-10-2018 RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 2.5E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.5E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.5E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.5E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_15440 05887259854ce62a23d4628363f1a6ee 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.5E-20 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Pfam PF00364 Biotin-requiring enzyme 232 302 3.8E-17 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Pfam PF00364 Biotin-requiring enzyme 2 72 1.7E-18 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Pfam PF00364 Biotin-requiring enzyme 118 187 6.6E-16 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Gene3D G3DSA:4.10.320.10 351 401 2.2E-16 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 139 168 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Pfam PF02817 e3 binding domain 361 395 1.1E-11 T 18-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Gene3D G3DSA:3.30.559.10 421 660 2.8E-78 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Gene3D G3DSA:2.40.50.100 1 78 2.0E-19 T 18-10-2018 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Gene3D G3DSA:2.40.50.100 230 308 8.8E-20 T 18-10-2018 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 434 659 3.4E-69 T 18-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 253 282 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 SUPERFAMILY SSF51230 116 207 1.83E-20 T 18-10-2018 IPR011053 Single hybrid motif RU84_00775 8d25668457e760c36bd2f7c894465da2 660 Gene3D G3DSA:2.40.50.100 117 194 1.2E-16 T 18-10-2018 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 SUPERFAMILY SSF51230 230 322 9.42E-23 T 18-10-2018 IPR011053 Single hybrid motif RU84_00775 8d25668457e760c36bd2f7c894465da2 660 SUPERFAMILY SSF52777 423 660 4.89E-74 T 18-10-2018 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 SUPERFAMILY SSF47005 357 400 7.19E-11 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 23 52 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_00775 8d25668457e760c36bd2f7c894465da2 660 SUPERFAMILY SSF51230 2 92 8.9E-22 T 18-10-2018 IPR011053 Single hybrid motif RU84_10465 ac46a1df7a3046640cee6bb39a428a8b 437 Pfam PF07690 Major Facilitator Superfamily 41 300 5.9E-38 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_10465 ac46a1df7a3046640cee6bb39a428a8b 437 ProSitePatterns PS00216 Sugar transport proteins signature 1. 306 323 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_10465 ac46a1df7a3046640cee6bb39a428a8b 437 ProSitePatterns PS00217 Sugar transport proteins signature 2. 348 373 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_10465 ac46a1df7a3046640cee6bb39a428a8b 437 Gene3D G3DSA:1.20.1250.20 30 429 4.5E-68 T 18-10-2018 RU84_10465 ac46a1df7a3046640cee6bb39a428a8b 437 SUPERFAMILY SSF103473 16 428 5.1E-81 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 11 351 9.5E-117 T 18-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 150 353 9.9E-50 T 18-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 PIRSF PIRSF006769 2 359 2.8E-123 T 18-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 SUPERFAMILY SSF53597 148 352 2.32E-52 T 18-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 92 - T 18-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 SUPERFAMILY SSF53927 7 148 3.01E-49 T 18-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 Pfam PF01872 RibD C-terminal domain 151 350 9.2E-43 T 18-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 103 5.5E-23 T 18-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 Gene3D G3DSA:3.40.140.10 1 144 3.5E-50 T 18-10-2018 RU84_17270 7cb018f1d6ef2c7a0c134a3f5c7f9b5c 361 Gene3D G3DSA:3.40.430.10 145 361 1.5E-72 T 18-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 RU84_05505 9763f9ce4e4e493fef3bf47ca852b3fd 485 Pfam PF03583 Secretory lipase 119 216 4.5E-5 T 18-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RU84_05505 9763f9ce4e4e493fef3bf47ca852b3fd 485 PIRSF PIRSF029171 243 464 6.2E-6 T 18-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RU84_05505 9763f9ce4e4e493fef3bf47ca852b3fd 485 PIRSF PIRSF029171 27 231 9.6E-53 T 18-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RU84_05505 9763f9ce4e4e493fef3bf47ca852b3fd 485 Gene3D G3DSA:3.40.50.1820 301 472 2.0E-6 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05505 9763f9ce4e4e493fef3bf47ca852b3fd 485 Gene3D G3DSA:3.40.50.1820 26 258 4.2E-44 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05505 9763f9ce4e4e493fef3bf47ca852b3fd 485 SUPERFAMILY SSF53474 71 441 1.76E-21 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_13855 692d2ddf05af21948729f0008d96c48b 151 Gene3D G3DSA:3.40.630.30 1 148 2.6E-41 T 18-10-2018 RU84_13855 692d2ddf05af21948729f0008d96c48b 151 Pfam PF00583 Acetyltransferase (GNAT) family 15 116 8.1E-16 T 18-10-2018 IPR000182 GNAT domain RU84_13855 692d2ddf05af21948729f0008d96c48b 151 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 9 139 2.0E-37 T 18-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 RU84_13855 692d2ddf05af21948729f0008d96c48b 151 SUPERFAMILY SSF55729 1 142 1.03E-32 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_16145 08ef463f35a60da3f566f093de707fbd 79 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 71 5.9E-22 T 18-10-2018 IPR000504 RNA recognition motif domain GO:0003676 RU84_16145 08ef463f35a60da3f566f093de707fbd 79 SMART SM00360 2 75 9.5E-27 T 18-10-2018 IPR000504 RNA recognition motif domain GO:0003676 RU84_16145 08ef463f35a60da3f566f093de707fbd 79 Gene3D G3DSA:3.30.70.330 1 79 2.9E-25 T 18-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RU84_16145 08ef463f35a60da3f566f093de707fbd 79 SUPERFAMILY SSF54928 2 77 1.48E-26 T 18-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 RU84_06300 1874d60f74705a7e3ded884015ec53f9 269 Pfam PF04403 Paraquat-inducible protein A 73 233 1.9E-52 T 18-10-2018 IPR007498 Intermembrane transport protein PqiA-like RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Pfam PF01321 Creatinase/Prolidase N-terminal domain 10 134 2.2E-14 T 18-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 SUPERFAMILY SSF53092 8 132 4.53E-10 T 18-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Gene3D G3DSA:3.40.350.10 1 150 5.3E-42 T 18-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Gene3D G3DSA:3.90.230.10 304 600 6.9E-95 T 18-10-2018 RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Pfam PF16188 C-terminal region of peptidase_M24 541 600 6.3E-23 T 18-10-2018 IPR032416 Peptidase M24, C-terminal domain RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Pfam PF00557 Metallopeptidase family M24 312 526 8.6E-45 T 18-10-2018 IPR000994 Peptidase M24 RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Gene3D G3DSA:3.40.350.10 151 298 2.0E-33 T 18-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 Pfam PF16189 Creatinase/Prolidase N-terminal domain 152 309 1.1E-37 T 18-10-2018 RU84_05480 0a4d57160bdfa6a3cc13608d85e0af3b 600 SUPERFAMILY SSF55920 307 566 1.31E-53 T 18-10-2018 IPR036005 Creatinase/aminopeptidase-like RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 PIRSF PIRSF001456 3 358 2.5E-135 T 18-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.3E-135 T 18-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 SUPERFAMILY SSF103263 4 351 3.4E-143 T 18-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 18-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 Pfam PF01264 Chorismate synthase 10 345 1.7E-136 T 18-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 18-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 Gene3D G3DSA:3.60.150.10 1 363 1.1E-161 T 18-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 18-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_08825 ed92fc450b7789a0cbd0441092ba10b7 363 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 36.57 T 18-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 RU84_01035 2777998f4eaf0a05e9ef2f23d813ac51 275 Gene3D G3DSA:3.40.50.150 33 275 7.3E-26 T 18-10-2018 RU84_01035 2777998f4eaf0a05e9ef2f23d813ac51 275 Pfam PF13489 Methyltransferase domain 46 216 2.1E-9 T 18-10-2018 RU84_01035 2777998f4eaf0a05e9ef2f23d813ac51 275 SUPERFAMILY SSF53335 29 273 1.94E-28 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_11085 892049fee891372b16038e5a48323d9f 248 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 11 247 4.0E-120 T 18-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 RU84_11085 892049fee891372b16038e5a48323d9f 248 Gene3D G3DSA:3.40.50.300 9 248 2.5E-69 T 18-10-2018 RU84_11085 892049fee891372b16038e5a48323d9f 248 Pfam PF00005 ABC transporter 26 173 3.1E-34 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_11085 892049fee891372b16038e5a48323d9f 248 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_11085 892049fee891372b16038e5a48323d9f 248 SMART SM00382 35 220 3.7E-7 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_11085 892049fee891372b16038e5a48323d9f 248 SUPERFAMILY SSF52540 11 244 3.59E-63 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11085 892049fee891372b16038e5a48323d9f 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 243 5.7E-10 T 18-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal RU84_07045 529463608027563f117e25964df3268c 370 Pfam PF03922 OmpW family 121 370 8.1E-17 T 18-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 RU84_07045 529463608027563f117e25964df3268c 370 SUPERFAMILY SSF56925 128 370 8.63E-17 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Gene3D G3DSA:1.10.268.10 368 496 4.1E-222 T 18-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 872 23.799 T 18-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 SMART SM00434 9 502 3.0E-271 T 18-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Gene3D G3DSA:2.120.10.90 533 871 5.5E-116 T 18-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 6 870 0.0 T 18-10-2018 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 SUPERFAMILY SSF101904 536 880 4.05E-100 T 18-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 SUPERFAMILY SSF56719 28 525 3.79E-176 T 18-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 648 691 8.8E-9 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 774 820 7.8E-16 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 696 739 2.1E-10 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 593 640 3.9E-7 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 543 587 3.5E-10 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 825 870 8.6E-12 T 18-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Gene3D G3DSA:3.30.1360.40 234 331 4.1E-222 T 18-10-2018 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Gene3D G3DSA:3.90.199.10 31 524 4.1E-222 T 18-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 RU84_04370 e04a72b9e03b5ebbbbf372fc7cb0da9f 904 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 30 509 1.4E-153 T 18-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 RU84_11690 23e4082ece431bafb22467720c022a59 379 Gene3D G3DSA:1.10.540.10 3 119 1.7E-32 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 SUPERFAMILY SSF47203 226 378 4.99E-47 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 PIRSF PIRSF016578 2 379 3.6E-16 T 18-10-2018 RU84_11690 23e4082ece431bafb22467720c022a59 379 SUPERFAMILY SSF56645 4 240 3.27E-78 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 2.5E-30 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 Gene3D G3DSA:1.20.140.10 234 379 1.0E-41 T 18-10-2018 RU84_11690 23e4082ece431bafb22467720c022a59 379 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 216 7.8E-24 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 376 4.5E-39 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_11690 23e4082ece431bafb22467720c022a59 379 Gene3D G3DSA:2.40.110.10 120 233 6.2E-39 T 18-10-2018 RU84_16610 350cfc3924378045bf9b340aeaf83746 432 Pfam PF00144 Beta-lactamase 50 390 4.1E-54 T 18-10-2018 IPR001466 Beta-lactamase-related RU84_16610 350cfc3924378045bf9b340aeaf83746 432 SUPERFAMILY SSF56601 35 387 1.03E-68 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_16610 350cfc3924378045bf9b340aeaf83746 432 Gene3D G3DSA:3.40.710.30 33 408 6.3E-75 T 18-10-2018 RU84_09260 d60d6d1382fe593b4e37f8f4f841f96c 606 Gene3D G3DSA:3.10.105.10 346 575 3.5E-90 T 18-10-2018 RU84_09260 d60d6d1382fe593b4e37f8f4f841f96c 606 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 517 1.1E-63 T 18-10-2018 IPR000914 Solute-binding protein family 5 domain RU84_09260 d60d6d1382fe593b4e37f8f4f841f96c 606 Gene3D G3DSA:3.40.190.10 235 587 3.5E-90 T 18-10-2018 RU84_09260 d60d6d1382fe593b4e37f8f4f841f96c 606 SUPERFAMILY SSF53850 35 599 6.7E-87 T 18-10-2018 RU84_09260 d60d6d1382fe593b4e37f8f4f841f96c 606 Gene3D G3DSA:3.90.76.10 54 234 3.5E-90 T 18-10-2018 RU84_09260 d60d6d1382fe593b4e37f8f4f841f96c 606 PIRSF PIRSF002741 4 599 3.5E-55 T 18-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 Gene3D G3DSA:3.40.50.2300 1 121 9.7E-41 T 18-10-2018 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 1.1E-101 T 18-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 Gene3D G3DSA:1.10.10.10 124 227 7.9E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 Pfam PF00072 Response regulator receiver domain 3 113 5.9E-26 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 4.4E-24 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 SMART SM00448 1 112 9.3E-40 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 SUPERFAMILY SSF52172 1 118 1.08E-38 T 18-10-2018 IPR011006 CheY-like superfamily RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 SMART SM00862 146 221 9.4E-24 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_15590 c9687fe05d9e7f680e65e9486d41e2dc 227 SUPERFAMILY SSF46894 122 223 8.5E-29 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_19155 4bda4b5c0ca8b7101c12b6f614ac2cc3 505 Gene3D G3DSA:3.40.50.300 93 490 2.0E-103 T 18-10-2018 RU84_19155 4bda4b5c0ca8b7101c12b6f614ac2cc3 505 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 114 490 2.2E-62 T 18-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain RU84_19155 4bda4b5c0ca8b7101c12b6f614ac2cc3 505 Gene3D G3DSA:1.10.8.80 191 303 2.0E-103 T 18-10-2018 RU84_19155 4bda4b5c0ca8b7101c12b6f614ac2cc3 505 SUPERFAMILY SSF52540 119 495 1.73E-34 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_14775 da23b797a7e26549ef22447255e6a465 595 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 13 595 69.815 T 18-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 RU84_14775 da23b797a7e26549ef22447255e6a465 595 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 211 595 1.7E-162 T 18-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 46 173 3.0E-41 T 18-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 134 155 - T 18-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 248 259 - T 18-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 325 595 1.5E-99 T 18-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 101 155 7.0E-25 T 18-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 45 172 2.1E-40 T 18-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 SUPERFAMILY SSF56762 221 595 1.7E-122 T 18-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 Gene3D G3DSA:3.30.460.80 7 153 3.7E-35 T 18-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 Gene3D G3DSA:1.10.645.20 210 595 1.2E-143 T 18-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 SUPERFAMILY SSF143243 22 225 2.09E-58 T 18-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 22 181 25.466 T 18-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14775 da23b797a7e26549ef22447255e6a465 595 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 207 595 41.148 T 18-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_10975 5c04e240bd4277921fc643fcf9dc1fdf 232 Pfam PF08856 Protein of unknown function (DUF1826) 26 230 2.5E-6 T 18-10-2018 IPR014955 Protein of unknown function DUF1826 RU84_11650 7804dbd2270d5430f3370432aeddd31d 358 Pfam PF00355 Rieske [2Fe-2S] domain 7 86 2.1E-18 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_11650 7804dbd2270d5430f3370432aeddd31d 358 Gene3D G3DSA:2.102.10.10 1 126 3.1E-31 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_11650 7804dbd2270d5430f3370432aeddd31d 358 Gene3D G3DSA:3.30.530.90 128 347 2.0E-65 T 18-10-2018 RU84_11650 7804dbd2270d5430f3370432aeddd31d 358 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 47 69 - T 18-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 RU84_11650 7804dbd2270d5430f3370432aeddd31d 358 SUPERFAMILY SSF55961 117 342 4.0E-57 T 18-10-2018 RU84_11650 7804dbd2270d5430f3370432aeddd31d 358 SUPERFAMILY SSF50022 2 111 7.33E-31 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_09860 2bdbd0ada3ce18a0ce83d87f4cfcde02 113 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 107 2.0E-9 T 18-10-2018 IPR008407 Branched-chain amino acid transport, AzlD RU84_15340 8638382c5e6b48a80b714822d0c88e2c 542 Gene3D G3DSA:3.40.50.12780 7 440 2.4E-110 T 18-10-2018 RU84_15340 8638382c5e6b48a80b714822d0c88e2c 542 SUPERFAMILY SSF56801 9 540 1.23E-147 T 18-10-2018 RU84_15340 8638382c5e6b48a80b714822d0c88e2c 542 Gene3D G3DSA:3.30.300.310 441 542 2.5E-34 T 18-10-2018 RU84_15340 8638382c5e6b48a80b714822d0c88e2c 542 Pfam PF00501 AMP-binding enzyme 25 445 4.9E-100 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_15340 8638382c5e6b48a80b714822d0c88e2c 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 454 528 7.7E-20 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_15340 8638382c5e6b48a80b714822d0c88e2c 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 Gene3D G3DSA:3.90.380.10 23 214 1.5E-48 T 18-10-2018 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 Gene3D G3DSA:3.90.380.10 244 368 8.9E-7 T 18-10-2018 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 181 370 1.5E-20 T 18-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 86 109 - T 18-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 58 73 7.7E-24 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 180 202 7.7E-24 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 100 120 7.7E-24 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 141 167 7.7E-24 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 79 99 7.7E-24 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 28 53 7.7E-24 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 SUPERFAMILY SSF55961 161 369 7.38E-34 T 18-10-2018 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 Gene3D G3DSA:2.102.10.10 43 165 1.5E-48 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 SUPERFAMILY SSF50022 18 156 4.19E-44 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 Hamap MF_02097 Carnitine monooxygenase oxygenase subunit. 1 371 74.412 T 18-10-2018 IPR039004 Carnitine monooxygenase oxygenase subunit GO:0009437|GO:0051537 RU84_13940 4a04445b57d8940ac2ea9013ea67920b 371 Pfam PF00355 Rieske [2Fe-2S] domain 43 131 6.5E-19 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 20 322 2.2E-48 T 18-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 Pfam PF06144 DNA polymerase III, delta subunit 20 181 8.8E-15 T 18-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 Gene3D G3DSA:1.20.272.10 210 328 9.8E-22 T 18-10-2018 RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 SUPERFAMILY SSF48019 208 324 6.97E-25 T 18-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 Gene3D G3DSA:1.10.8.60 143 209 1.4E-10 T 18-10-2018 RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 SUPERFAMILY SSF52540 10 206 3.63E-26 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15770 2d6658d0da64e26d179a175d4a2ebba0 329 Gene3D G3DSA:3.40.50.300 7 134 6.3E-25 T 18-10-2018 RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 Pfam PF07729 FCD domain 82 202 5.0E-11 T 18-10-2018 IPR011711 GntR, C-terminal RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 1.0E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 SMART SM00345 13 71 2.6E-12 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 SUPERFAMILY SSF46785 3 75 5.61E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 Gene3D G3DSA:1.10.10.10 5 73 1.6E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 SUPERFAMILY SSF48008 81 213 2.62E-6 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_14550 cc6da4b11a2ac4c7633d3eda3f9fd31f 231 Gene3D G3DSA:1.20.120.530 74 215 3.8E-10 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 SUPERFAMILY SSF111369 215 299 8.5E-10 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 Gene3D G3DSA:2.40.30.170 260 375 1.4E-36 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 Gene3D G3DSA:2.40.50.100 79 111 5.9E-11 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 SUPERFAMILY SSF111369 82 156 5.75E-9 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 Pfam PF13437 HlyD family secretion protein 245 364 1.4E-13 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 Gene3D G3DSA:1.10.287.470 112 143 5.9E-11 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 90 110 4.4E-7 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 361 375 4.4E-7 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 Gene3D G3DSA:1.10.287.470 146 218 1.2E-5 T 18-10-2018 RU84_14670 901cf1bf7efd72396a7a816af74c5d5f 375 Pfam PF13533 Biotin-lipoyl like 82 125 1.6E-8 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_08600 ccaed151613219882e984cadc2901492 396 Gene3D G3DSA:2.40.420.20 298 366 1.3E-93 T 18-10-2018 RU84_08600 ccaed151613219882e984cadc2901492 396 Gene3D G3DSA:2.40.50.100 59 203 1.3E-93 T 18-10-2018 RU84_08600 ccaed151613219882e984cadc2901492 396 Gene3D G3DSA:2.40.30.170 48 297 1.3E-93 T 18-10-2018 RU84_08600 ccaed151613219882e984cadc2901492 396 SUPERFAMILY SSF111369 49 292 8.24E-71 T 18-10-2018 RU84_08600 ccaed151613219882e984cadc2901492 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 367 1.3E-74 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_08600 ccaed151613219882e984cadc2901492 396 Gene3D G3DSA:1.10.287.470 94 167 1.3E-93 T 18-10-2018 RU84_08600 ccaed151613219882e984cadc2901492 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 287 1.1E-18 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_07885 4b717fe0a62f27664b0cdb06a676ac81 285 Gene3D G3DSA:3.20.20.70 3 285 8.2E-96 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_07885 4b717fe0a62f27664b0cdb06a676ac81 285 Pfam PF00793 DAHP synthetase I family 14 276 1.0E-71 T 18-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_07885 4b717fe0a62f27664b0cdb06a676ac81 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 17 279 48.426 T 18-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_07885 4b717fe0a62f27664b0cdb06a676ac81 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 22 277 1.1E-113 T 18-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_07885 4b717fe0a62f27664b0cdb06a676ac81 285 SUPERFAMILY SSF51569 8 281 1.19E-100 T 18-10-2018 RU84_09825 61623aa561e4a0e763e0cbb75bd15224 219 Gene3D G3DSA:1.10.3720.10 2 217 5.4E-55 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09825 61623aa561e4a0e763e0cbb75bd15224 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 217 6.4E-26 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_09825 61623aa561e4a0e763e0cbb75bd15224 219 SUPERFAMILY SSF161098 8 202 6.93E-49 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09600 292f0f42c241753487e6e5e91850a914 662 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 18-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_09600 292f0f42c241753487e6e5e91850a914 662 SUPERFAMILY SSF52922 534 661 6.71E-37 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_09600 292f0f42c241753487e6e5e91850a914 662 SMART SM00861 357 527 2.2E-71 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_09600 292f0f42c241753487e6e5e91850a914 662 Gene3D G3DSA:3.40.50.970 6 328 1.2E-131 T 18-10-2018 RU84_09600 292f0f42c241753487e6e5e91850a914 662 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 661 2.1E-296 T 18-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 RU84_09600 292f0f42c241753487e6e5e91850a914 662 SUPERFAMILY SSF52518 7 322 4.21E-120 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_09600 292f0f42c241753487e6e5e91850a914 662 Gene3D G3DSA:3.40.50.920 540 661 2.8E-36 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_09600 292f0f42c241753487e6e5e91850a914 662 Pfam PF02780 Transketolase, C-terminal domain 551 653 2.9E-10 T 18-10-2018 IPR033248 Transketolase, C-terminal domain RU84_09600 292f0f42c241753487e6e5e91850a914 662 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 336 5.7E-164 T 18-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_09600 292f0f42c241753487e6e5e91850a914 662 SUPERFAMILY SSF52518 338 527 8.34E-69 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_09600 292f0f42c241753487e6e5e91850a914 662 Gene3D G3DSA:3.40.50.970 329 539 8.9E-86 T 18-10-2018 RU84_09600 292f0f42c241753487e6e5e91850a914 662 Pfam PF02779 Transketolase, pyrimidine binding domain 356 526 6.0E-47 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_09600 292f0f42c241753487e6e5e91850a914 662 ProSitePatterns PS00802 Transketolase signature 2. 469 485 - T 18-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_08910 a52f9a436f65953ff9a19678045fe420 368 Gene3D G3DSA:2.40.160.10 8 368 2.2E-50 T 18-10-2018 IPR023614 Porin domain superfamily RU84_08910 a52f9a436f65953ff9a19678045fe420 368 Pfam PF13609 Gram-negative porin 7 349 2.5E-30 T 18-10-2018 RU84_08910 a52f9a436f65953ff9a19678045fe420 368 SUPERFAMILY SSF56935 19 368 2.75E-44 T 18-10-2018 RU84_03740 184fa17c20d1a07e1093379f21471d11 301 Pfam PF03547 Membrane transport protein 153 296 5.8E-11 T 18-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RU84_03740 184fa17c20d1a07e1093379f21471d11 301 Gene3D G3DSA:1.20.1530.20 155 301 2.4E-7 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_15485 db77aea4edea8053fa22c79e7635b400 90 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 17 81 9.7E-9 T 18-10-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 RU84_07250 5c43ab12858f3f0116240e5c8c1f01ad 363 PIRSF PIRSF004925 1 363 6.1E-100 T 18-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter RU84_07250 5c43ab12858f3f0116240e5c8c1f01ad 363 Gene3D G3DSA:1.20.1250.20 167 362 1.9E-34 T 18-10-2018 RU84_07250 5c43ab12858f3f0116240e5c8c1f01ad 363 SUPERFAMILY SSF103473 2 359 5.36E-44 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_07250 5c43ab12858f3f0116240e5c8c1f01ad 363 Gene3D G3DSA:1.20.1250.20 1 166 2.3E-19 T 18-10-2018 RU84_07250 5c43ab12858f3f0116240e5c8c1f01ad 363 Pfam PF12832 MFS_1 like family 1 338 9.8E-78 T 18-10-2018 IPR024989 Major facilitator superfamily associated domain RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 352 461 1.5E-26 T 18-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 SUPERFAMILY SSF55424 351 467 6.53E-30 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.8E-29 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 2.8E-29 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.8E-29 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 2.8E-29 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 186 204 2.8E-29 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 49 64 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 159 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 186 211 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 2.0E-51 T 18-10-2018 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 Gene3D G3DSA:3.50.50.60 15 337 4.7E-89 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 Gene3D G3DSA:3.50.50.60 159 277 4.7E-89 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 Gene3D G3DSA:3.30.390.30 351 469 2.1E-31 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 SUPERFAMILY SSF51905 13 343 9.07E-53 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 PIRSF PIRSF000350 3 467 1.3E-65 T 18-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RU84_05600 2ccbdbddc1e6cecd9fb2b1b8bd0266e0 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 15 334 1.5E-57 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 4.4E-39 T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 4.4E-39 T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 4.4E-39 T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 SUPERFAMILY SSF74731 3 117 1.7E-47 T 18-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 Pfam PF00453 Ribosomal protein L20 3 109 2.4E-46 T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 5.7E-47 T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 Gene3D G3DSA:1.10.1900.20 56 118 2.2E-25 T 18-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-22 T 18-10-2018 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.472 T 18-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15305 0ed2fefc10a3d0fcfb8b75de94290366 119 Gene3D G3DSA:1.10.720.90 2 55 3.9E-24 T 18-10-2018 RU84_05345 c5a962aa8ece9375c49d6dd8202ce003 436 SUPERFAMILY SSF51905 2 249 7.69E-14 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_05345 c5a962aa8ece9375c49d6dd8202ce003 436 TIGRFAM TIGR04439 histamin_N_OH: putative histamine N-monooxygenase 5 434 4.3E-255 T 18-10-2018 IPR031043 Putative histamine N-monooxygenase RU84_05345 c5a962aa8ece9375c49d6dd8202ce003 436 Gene3D G3DSA:3.50.50.60 1 430 7.2E-108 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_05345 c5a962aa8ece9375c49d6dd8202ce003 436 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 3 343 2.3E-110 T 18-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 Pfam PF07478 D-ala D-ala ligase C-terminus 106 300 1.8E-54 T 18-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 PIRSF PIRSF039102 41 308 1.0E-80 T 18-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 PIRSF PIRSF039102 5 50 2.4E-7 T 18-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 Pfam PF01820 D-ala D-ala ligase N-terminus 9 88 2.9E-16 T 18-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 SUPERFAMILY SSF52440 9 99 3.93E-26 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 Gene3D G3DSA:3.40.50.20 1 87 1.9E-33 T 18-10-2018 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 SUPERFAMILY SSF56059 99 304 4.6E-56 T 18-10-2018 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 8 304 34.033 T 18-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 9 303 2.5E-99 T 18-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 18-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 246 274 - T 18-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_00735 43e0aa7f0792e88ab54915acbf836000 308 Gene3D G3DSA:3.30.1490.20 115 179 9.9E-29 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 SMART SM00986 62 223 2.4E-35 T 18-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 17 234 40.57 T 18-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 SMART SM00987 62 223 2.4E-35 T 18-10-2018 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 Gene3D G3DSA:3.40.470.10 1 237 2.9E-100 T 18-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 SUPERFAMILY SSF52141 15 235 6.98E-91 T 18-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 Pfam PF03167 Uracil DNA glycosylase superfamily 67 222 1.4E-24 T 18-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 18 227 2.1E-84 T 18-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_09360 b5a75823c53dc80ade514780cb4cef47 237 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 70 79 - T 18-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_04190 471ea167f83ccd16138fbb7418f577a7 301 Gene3D G3DSA:3.30.2010.10 74 165 5.0E-34 T 18-10-2018 RU84_04190 471ea167f83ccd16138fbb7418f577a7 301 Pfam PF01435 Peptidase family M48 81 297 2.1E-40 T 18-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RU84_04190 471ea167f83ccd16138fbb7418f577a7 301 Hamap MF_00188 Protease HtpX [htpX]. 1 298 25.605 T 18-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 RU84_04985 27ae9b3388f4a2be6b116220c227f971 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 60 2.6E-16 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04985 27ae9b3388f4a2be6b116220c227f971 293 Pfam PF03466 LysR substrate binding domain 88 286 2.6E-34 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_04985 27ae9b3388f4a2be6b116220c227f971 293 Gene3D G3DSA:3.40.190.290 91 291 3.2E-32 T 18-10-2018 RU84_04985 27ae9b3388f4a2be6b116220c227f971 293 SUPERFAMILY SSF46785 3 110 7.26E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_04985 27ae9b3388f4a2be6b116220c227f971 293 Gene3D G3DSA:1.10.10.10 1 80 3.2E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_04985 27ae9b3388f4a2be6b116220c227f971 293 SUPERFAMILY SSF53850 88 288 1.14E-35 T 18-10-2018 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 482 602 2.5E-24 T 18-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 6 32 2.6E-5 T 18-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 SUPERFAMILY SSF56645 42 276 4.06E-41 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 296 464 5.3E-19 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Gene3D G3DSA:2.40.110.10 161 300 2.2E-23 T 18-10-2018 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 55 157 2.7E-4 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 274 3.4E-15 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Gene3D G3DSA:1.20.140.10 301 468 9.7E-42 T 18-10-2018 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 SUPERFAMILY SSF47203 301 469 6.44E-39 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_08260 bc9030abc759087b3b7f4243bfb056a0 607 Gene3D G3DSA:1.10.540.10 44 159 4.9E-6 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 SUPERFAMILY SSF52440 3 96 1.04E-16 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 351 1.3E-113 T 18-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 Pfam PF02222 ATP-grasp domain 106 274 1.9E-56 T 18-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 4 347 39.182 T 18-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 Gene3D G3DSA:3.40.50.20 1 101 1.7E-27 T 18-10-2018 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 Gene3D G3DSA:3.30.470.20 177 366 1.4E-69 T 18-10-2018 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 Gene3D G3DSA:3.30.1490.20 102 176 9.4E-27 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 SUPERFAMILY SSF51246 299 364 5.81E-16 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_18305 ed2ffd7a5ed551a1fccb3e0a58252d22 373 SUPERFAMILY SSF56059 97 295 4.95E-63 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 SUPERFAMILY SSF111369 181 330 4.45E-9 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Gene3D G3DSA:2.40.50.100 44 77 1.8E-13 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Pfam PF13533 Biotin-lipoyl like 45 93 1.2E-14 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Pfam PF13437 HlyD family secretion protein 211 321 4.9E-13 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Gene3D G3DSA:2.40.50.100 211 245 1.4E-19 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Gene3D G3DSA:1.10.287.470 78 98 1.8E-13 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Gene3D G3DSA:1.10.287.470 180 210 1.4E-19 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 SUPERFAMILY SSF111369 43 136 6.34E-10 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Gene3D G3DSA:1.10.287.470 109 175 1.2E-10 T 18-10-2018 RU84_08945 243cc6ceba1543f274bb95fd645c9a81 339 Gene3D G3DSA:2.40.30.170 246 332 1.4E-19 T 18-10-2018 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 SUPERFAMILY SSF55681 118 586 4.98E-104 T 18-10-2018 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Gene3D G3DSA:3.30.1360.30 275 423 1.3E-197 T 18-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 SUPERFAMILY SSF55261 293 422 4.58E-44 T 18-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Gene3D G3DSA:2.40.50.140 1 107 2.2E-34 T 18-10-2018 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 6.0E-109 T 18-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 8.9E-242 T 18-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 2.1E-26 T 18-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 2.1E-26 T 18-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 2.1E-26 T 18-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 2.1E-26 T 18-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Pfam PF02938 GAD domain 311 409 2.3E-30 T 18-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Gene3D G3DSA:3.30.930.10 120 582 1.3E-197 T 18-10-2018 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Pfam PF01336 OB-fold nucleic acid binding domain 19 103 1.1E-17 T 18-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 SUPERFAMILY SSF50249 2 106 3.05E-33 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02990 2a71d9b26d4d505c11da9d4e6b17e820 592 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 33.448 T 18-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 RU84_14790 7ef7876195aefbb5f64caec05aa36899 473 Gene3D G3DSA:3.30.70.270 298 472 7.0E-51 T 18-10-2018 RU84_14790 7ef7876195aefbb5f64caec05aa36899 473 SUPERFAMILY SSF55073 314 471 1.02E-43 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_14790 7ef7876195aefbb5f64caec05aa36899 473 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 305 471 2.7E-46 T 18-10-2018 IPR000160 GGDEF domain RU84_14790 7ef7876195aefbb5f64caec05aa36899 473 Pfam PF00990 Diguanylate cyclase, GGDEF domain 310 468 6.3E-44 T 18-10-2018 IPR000160 GGDEF domain RU84_14790 7ef7876195aefbb5f64caec05aa36899 473 SMART SM00267 298 472 9.5E-54 T 18-10-2018 IPR000160 GGDEF domain RU84_06390 62bd65bfeae95da7f388aea6c638acc5 168 SUPERFAMILY SSF55729 1 147 3.04E-27 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_06390 62bd65bfeae95da7f388aea6c638acc5 168 Gene3D G3DSA:3.40.630.30 1 163 1.7E-29 T 18-10-2018 RU84_06390 62bd65bfeae95da7f388aea6c638acc5 168 Pfam PF13302 Acetyltransferase (GNAT) domain 6 145 4.2E-19 T 18-10-2018 IPR000182 GNAT domain RU84_17505 7b8444e7506b5161251848630ef30fb4 189 SUPERFAMILY SSF55821 6 188 1.25E-43 T 18-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RU84_17505 7b8444e7506b5161251848630ef30fb4 189 Pfam PF01300 Telomere recombination 11 187 5.2E-34 T 18-10-2018 IPR006070 YrdC-like domain GO:0003725 RU84_17505 7b8444e7506b5161251848630ef30fb4 189 Gene3D G3DSA:3.90.870.10 1 188 9.0E-54 T 18-10-2018 RU84_17505 7b8444e7506b5161251848630ef30fb4 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 188 35.501 T 18-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 1.5E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 SUPERFAMILY SSF46785 5 71 6.74E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 Pfam PF00155 Aminotransferase class I and II 135 449 2.9E-28 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 Gene3D G3DSA:3.90.1150.10 100 463 7.1E-82 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 SMART SM00345 8 67 1.4E-8 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 Gene3D G3DSA:3.40.640.10 142 360 7.1E-82 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 Gene3D G3DSA:1.10.10.10 1 69 1.7E-15 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00225 817f18aa81f46e481bd61aa1dfd48f4b 474 SUPERFAMILY SSF53383 100 468 9.68E-79 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_12930 024699895bb0f6f71450c1d67e272d00 406 Gene3D G3DSA:1.20.1250.20 226 404 1.3E-16 T 18-10-2018 RU84_12930 024699895bb0f6f71450c1d67e272d00 406 SUPERFAMILY SSF103473 21 400 3.4E-52 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_12930 024699895bb0f6f71450c1d67e272d00 406 Gene3D G3DSA:1.20.1250.20 21 208 1.5E-20 T 18-10-2018 RU84_12930 024699895bb0f6f71450c1d67e272d00 406 Pfam PF07690 Major Facilitator Superfamily 32 255 1.8E-19 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_18700 b0dc6b85a0dafecb0b4beb313fd2a4c2 202 SUPERFAMILY SSF46689 5 87 3.64E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_18700 b0dc6b85a0dafecb0b4beb313fd2a4c2 202 Gene3D G3DSA:1.10.357.10 2 201 4.4E-70 T 18-10-2018 RU84_18700 b0dc6b85a0dafecb0b4beb313fd2a4c2 202 SUPERFAMILY SSF48498 83 197 1.95E-22 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_18700 b0dc6b85a0dafecb0b4beb313fd2a4c2 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 1.4E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18700 b0dc6b85a0dafecb0b4beb313fd2a4c2 202 Pfam PF16925 Bacterial transcriptional repressor C-terminal 84 190 4.3E-14 T 18-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PIRSF PIRSF036480 6 287 1.4E-111 T 18-10-2018 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 Pfam PF01842 ACT domain 10 70 4.9E-8 T 18-10-2018 IPR002912 ACT domain RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 Pfam PF00551 Formyl transferase 94 269 1.9E-35 T 18-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 95 117 1.8E-58 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 117 144 1.8E-58 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 261 286 1.8E-58 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 1.8E-58 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 44 56 1.8E-58 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 239 261 1.8E-58 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 SUPERFAMILY SSF55021 8 91 1.52E-14 T 18-10-2018 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 Gene3D G3DSA:3.30.70.260 7 91 4.0E-23 T 18-10-2018 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 287 4.7E-117 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 SUPERFAMILY SSF53328 94 287 7.46E-57 T 18-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 Gene3D G3DSA:3.40.50.170 94 287 4.5E-68 T 18-10-2018 RU84_16100 cc811a52bddec042194a8a3ee6a4c02c 287 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 287 43.784 T 18-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 RU84_03555 d709b87cd37e23ff6a7711bf78a78882 492 ProSitePatterns PS00571 Amidases signature. 152 183 - T 18-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 RU84_03555 d709b87cd37e23ff6a7711bf78a78882 492 SUPERFAMILY SSF75304 3 484 2.88E-165 T 18-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_03555 d709b87cd37e23ff6a7711bf78a78882 492 Gene3D G3DSA:3.90.1300.10 3 487 2.7E-201 T 18-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_03555 d709b87cd37e23ff6a7711bf78a78882 492 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 16 479 7.6E-186 T 18-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_03555 d709b87cd37e23ff6a7711bf78a78882 492 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 479 91.451 T 18-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_03555 d709b87cd37e23ff6a7711bf78a78882 492 Pfam PF01425 Amidase 25 468 1.4E-163 T 18-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 RU84_06315 8a0600581954e3c810446f082a823cb9 133 Pfam PF00576 HIUase/Transthyretin family 24 132 9.9E-37 T 18-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 SUPERFAMILY SSF49472 19 133 1.96E-38 T 18-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 ProSitePatterns PS00769 Transthyretin signature 2. 116 128 - T 18-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 PRINTS PR00189 Transthyretin signature 23 43 5.0E-10 T 18-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 PRINTS PR00189 Transthyretin signature 111 133 5.0E-10 T 18-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 PRINTS PR00189 Transthyretin signature 55 80 5.0E-10 T 18-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 SMART SM00095 19 133 5.6E-4 T 18-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_06315 8a0600581954e3c810446f082a823cb9 133 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 22 132 8.4E-42 T 18-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RU84_06315 8a0600581954e3c810446f082a823cb9 133 Gene3D G3DSA:2.60.40.180 19 133 2.6E-39 T 18-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 SUPERFAMILY SSF54909 70 153 2.55E-19 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 Gene3D G3DSA:3.30.70.920 62 145 2.1E-19 T 18-10-2018 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.8E-12 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.8E-12 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.8E-12 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 Gene3D G3DSA:1.10.10.10 2 61 2.2E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 SMART SM00344 8 117 1.4E-40 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 Pfam PF13404 AsnC-type helix-turn-helix domain 8 48 3.8E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 Pfam PF01037 Lrp/AsnC ligand binding domain 74 147 5.1E-18 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_09555 c3853e7e5657abcf51af33930ceb98a2 162 SUPERFAMILY SSF46785 7 66 7.92E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11090 09fcadde2a7c68daa9db99c977a4c3a0 182 Gene3D G3DSA:2.60.450.10 34 175 5.3E-41 T 18-10-2018 RU84_11090 09fcadde2a7c68daa9db99c977a4c3a0 182 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 32 171 5.6E-38 T 18-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RU84_11090 09fcadde2a7c68daa9db99c977a4c3a0 182 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 12 172 23.032 T 18-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 RU84_11090 09fcadde2a7c68daa9db99c977a4c3a0 182 Pfam PF03968 OstA-like protein 44 153 4.7E-26 T 18-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal RU84_18115 dee8d0e1df4fe48904bde304885a5b60 205 Gene3D G3DSA:3.40.30.10 25 205 2.9E-54 T 18-10-2018 RU84_18115 dee8d0e1df4fe48904bde304885a5b60 205 SUPERFAMILY SSF52833 24 185 2.2E-42 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_18115 dee8d0e1df4fe48904bde304885a5b60 205 Pfam PF01323 DSBA-like thioredoxin domain 89 187 7.6E-17 T 18-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RU84_18115 dee8d0e1df4fe48904bde304885a5b60 205 PIRSF PIRSF001488 1 205 4.3E-51 T 18-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL RU84_17980 47d3249d44719677fcc9afd0fbdbbbcb 277 Pfam PF00535 Glycosyl transferase family 2 13 140 9.1E-21 T 18-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RU84_17980 47d3249d44719677fcc9afd0fbdbbbcb 277 Gene3D G3DSA:3.90.550.10 4 220 3.4E-33 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_17980 47d3249d44719677fcc9afd0fbdbbbcb 277 SUPERFAMILY SSF53448 12 252 7.31E-42 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 TIGRFAM TIGR01443 intein_Cterm: intein C-terminal splicing region 558 582 1.1E-9 T 18-10-2018 IPR030934 Intein C-terminal splicing region RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 Gene3D G3DSA:3.10.28.10 421 524 5.0E-10 T 18-10-2018 IPR027434 Homing endonuclease RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 PRINTS PR00379 Intein signature 576 585 6.4E-5 T 18-10-2018 IPR006142 Intein GO:0016539 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 PRINTS PR00379 Intein signature 554 571 6.4E-5 T 18-10-2018 IPR006142 Intein GO:0016539 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 PRINTS PR00379 Intein signature 340 352 6.4E-5 T 18-10-2018 IPR006142 Intein GO:0016539 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 Pfam PF00154 recA bacterial DNA recombination protein 581 643 1.7E-7 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 Pfam PF00154 recA bacterial DNA recombination protein 18 222 1.2E-26 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 SUPERFAMILY SSF55608 339 517 8.67E-14 T 18-10-2018 IPR027434 Homing endonuclease RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 SUPERFAMILY SSF52540 21 225 1.39E-17 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 PRINTS PR00142 RecA protein signature 585 613 7.9E-5 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 PRINTS PR00142 RecA protein signature 621 650 7.9E-5 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 PRINTS PR00142 RecA protein signature 133 162 7.9E-5 T 18-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 SMART SM00305 535 587 4.1E-6 T 18-10-2018 IPR003586 Hint domain C-terminal Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 Gene3D G3DSA:3.40.50.300 567 702 1.5E-15 T 18-10-2018 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 Gene3D G3DSA:3.40.50.300 26 249 1.6E-35 T 18-10-2018 RU84_18540 e7f4238e837eb51ac55fa1771fee9975 734 SUPERFAMILY SSF51294 222 580 1.7E-16 T 18-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_13715 f839de0cd9ddc2735aabaf05153f22eb 1198 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1089 1156 1.4E-10 T 18-10-2018 RU84_13715 f839de0cd9ddc2735aabaf05153f22eb 1198 Pfam PF13476 AAA domain 5 280 6.4E-23 T 18-10-2018 IPR038729 Rad50/SbcC-type AAA domain RU84_13715 f839de0cd9ddc2735aabaf05153f22eb 1198 SUPERFAMILY SSF52540 1004 1175 3.66E-16 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13715 f839de0cd9ddc2735aabaf05153f22eb 1198 Gene3D G3DSA:3.40.50.300 941 1198 1.2E-27 T 18-10-2018 RU84_13715 f839de0cd9ddc2735aabaf05153f22eb 1198 Gene3D G3DSA:3.40.50.300 1 357 1.1E-38 T 18-10-2018 RU84_13715 f839de0cd9ddc2735aabaf05153f22eb 1198 SUPERFAMILY SSF52540 1 290 2.79E-27 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04145 96da8d87767f600bbacb2c45f9ebf450 252 Gene3D G3DSA:3.60.21.10 1 239 1.2E-27 T 18-10-2018 IPR029052 Metallo-dependent phosphatase-like RU84_04145 96da8d87767f600bbacb2c45f9ebf450 252 Pfam PF00149 Calcineurin-like phosphoesterase 2 189 1.2E-12 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_04145 96da8d87767f600bbacb2c45f9ebf450 252 SUPERFAMILY SSF56300 2 234 5.7E-37 T 18-10-2018 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 227 41.097 T 18-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 Gene3D G3DSA:1.10.287.610 105 152 1.6E-92 T 18-10-2018 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 160 184 - T 18-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 PRINTS PR00395 Ribosomal protein S2 signature 160 177 6.8E-36 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 PRINTS PR00395 Ribosomal protein S2 signature 39 48 6.8E-36 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 PRINTS PR00395 Ribosomal protein S2 signature 89 106 6.8E-36 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 PRINTS PR00395 Ribosomal protein S2 signature 8 26 6.8E-36 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 PRINTS PR00395 Ribosomal protein S2 signature 198 212 6.8E-36 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 PRINTS PR00395 Ribosomal protein S2 signature 177 188 6.8E-36 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 6 228 1.8E-103 T 18-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 SUPERFAMILY SSF52313 8 234 6.41E-94 T 18-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily RU84_05630 740c955f56a660f3201c8628f6df80b9 250 Gene3D G3DSA:3.40.50.10490 11 221 1.6E-92 T 18-10-2018 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 Pfam PF00318 Ribosomal protein S2 11 226 2.5E-94 T 18-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_05630 740c955f56a660f3201c8628f6df80b9 250 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 8 19 - T 18-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 18-10-2018 IPR031157 Tr-type G domain, conserved site RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 471 52.303 T 18-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 Pfam PF00009 Elongation factor Tu GTP binding domain 24 213 7.9E-45 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 Gene3D G3DSA:2.40.30.10 330 434 4.3E-35 T 18-10-2018 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 SUPERFAMILY SSF50465 333 433 3.06E-32 T 18-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 SUPERFAMILY SSF52540 16 236 7.3E-59 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 433 5.7E-197 T 18-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 SUPERFAMILY SSF50447 242 328 8.25E-24 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 Gene3D G3DSA:3.40.50.300 1 239 2.1E-76 T 18-10-2018 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 212 1.9E-13 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 Gene3D G3DSA:2.40.30.10 241 327 2.5E-28 T 18-10-2018 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 PRINTS PR00315 GTP-binding elongation factor signature 87 95 6.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 PRINTS PR00315 GTP-binding elongation factor signature 107 117 6.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 PRINTS PR00315 GTP-binding elongation factor signature 160 169 6.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 PRINTS PR00315 GTP-binding elongation factor signature 26 39 6.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_12745 bc16a0f4cfb70320621e4f58084d6427 537 PRINTS PR00315 GTP-binding elongation factor signature 123 134 6.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 880 0.0 T 18-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 SUPERFAMILY SSF52518 469 696 1.18E-95 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 PIRSF PIRSF000156 2 884 0.0 T 18-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 SUPERFAMILY SSF52518 54 464 1.51E-138 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 134 292 2.1E-8 T 18-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 Gene3D G3DSA:3.40.50.920 702 883 6.4E-67 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 Gene3D G3DSA:3.40.50.970 468 701 4.7E-107 T 18-10-2018 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 SUPERFAMILY SSF52922 697 879 1.83E-50 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_00770 185a2fe317be2720a5c2978b0287dcf6 905 Gene3D G3DSA:3.40.50.970 53 467 7.8E-134 T 18-10-2018 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 265 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 SUPERFAMILY SSF51215 26 152 3.27E-20 T 18-10-2018 IPR037923 Transcription regulator HTH-like RU84_05645 c01f53e641316bbad6205647b9c982b8 274 Gene3D G3DSA:1.10.10.60 168 229 5.8E-18 T 18-10-2018 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 Pfam PF12833 Helix-turn-helix domain 193 269 9.3E-24 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 SUPERFAMILY SSF46689 224 270 6.42E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 SUPERFAMILY SSF46689 172 221 9.41E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 Gene3D G3DSA:1.10.10.60 230 273 1.1E-14 T 18-10-2018 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 SMART SM00342 187 269 5.5E-31 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 253 1.4E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 253 269 1.4E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_05645 c01f53e641316bbad6205647b9c982b8 274 Pfam PF02311 AraC-like ligand binding domain 15 142 1.0E-22 T 18-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RU84_05110 e6825f8498cd48c287da996b2788dcbb 459 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_05110 e6825f8498cd48c287da996b2788dcbb 459 Pfam PF00324 Amino acid permease 17 449 1.5E-111 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_05110 e6825f8498cd48c287da996b2788dcbb 459 Gene3D G3DSA:1.20.1740.10 9 457 5.4E-58 T 18-10-2018 RU84_05110 e6825f8498cd48c287da996b2788dcbb 459 PIRSF PIRSF006060 1 458 3.3E-70 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_09200 ee93e598df06a2bbe57f4c06065b9b13 259 SUPERFAMILY SSF52833 143 258 1.14E-11 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_09200 ee93e598df06a2bbe57f4c06065b9b13 259 Gene3D G3DSA:3.40.30.10 142 259 2.9E-17 T 18-10-2018 RU84_09200 ee93e598df06a2bbe57f4c06065b9b13 259 Pfam PF13417 Glutathione S-transferase, N-terminal domain 162 258 2.7E-10 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_09200 ee93e598df06a2bbe57f4c06065b9b13 259 Pfam PF13417 Glutathione S-transferase, N-terminal domain 38 113 1.9E-14 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_09200 ee93e598df06a2bbe57f4c06065b9b13 259 SUPERFAMILY SSF52833 36 134 2.05E-17 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_09200 ee93e598df06a2bbe57f4c06065b9b13 259 Gene3D G3DSA:3.40.30.10 33 132 1.1E-13 T 18-10-2018 RU84_03405 bb712657667572f40998b1bd38475c6b 463 SUPERFAMILY SSF102114 45 453 1.05E-67 T 18-10-2018 RU84_03405 bb712657667572f40998b1bd38475c6b 463 SMART SM00729 54 278 1.9E-21 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_03405 bb712657667572f40998b1bd38475c6b 463 Pfam PF04055 Radical SAM superfamily 71 232 1.9E-13 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_03405 bb712657667572f40998b1bd38475c6b 463 Gene3D G3DSA:3.80.30.20 5 379 4.7E-74 T 18-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 SUPERFAMILY SSF53187 39 454 8.6E-69 T 18-10-2018 RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 PIRSF PIRSF005962 36 455 4.8E-97 T 18-10-2018 IPR017439 Amidohydrolase GO:0016787 RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 Pfam PF01546 Peptidase family M20/M25/M40 109 406 6.6E-16 T 18-10-2018 IPR002933 Peptidase M20 GO:0016787 RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 Gene3D G3DSA:3.30.70.360 229 347 8.9E-102 T 18-10-2018 RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 SUPERFAMILY SSF55031 231 334 3.29E-25 T 18-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 53 406 8.2E-75 T 18-10-2018 IPR017439 Amidohydrolase GO:0016787 RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 Gene3D G3DSA:3.40.630.10 53 407 8.9E-102 T 18-10-2018 RU84_14885 df34e874e2267fac7ef9182da1f7d089 455 Pfam PF07687 Peptidase dimerisation domain 236 321 1.1E-7 T 18-10-2018 IPR011650 Peptidase M20, dimerisation domain RU84_19350 db6b2224ec0f360dea95c5427056b452 100 Gene3D G3DSA:1.10.260.40 11 89 2.5E-12 T 18-10-2018 RU84_19350 db6b2224ec0f360dea95c5427056b452 100 SMART SM00530 32 87 9.1E-9 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_19350 db6b2224ec0f360dea95c5427056b452 100 SUPERFAMILY SSF47413 20 92 3.49E-16 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_19350 db6b2224ec0f360dea95c5427056b452 100 Pfam PF13744 Helix-turn-helix domain 14 89 4.2E-12 T 18-10-2018 IPR039554 HigA2-like, helix-turn-helix domain RU84_00235 15b5634d21587a33ee4a9efd570fdf42 186 Gene3D G3DSA:1.10.340.30 3 186 9.4E-75 T 18-10-2018 RU84_00235 15b5634d21587a33ee4a9efd570fdf42 186 Pfam PF03352 Methyladenine glycosylase 8 183 1.4E-70 T 18-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 RU84_00235 15b5634d21587a33ee4a9efd570fdf42 186 SUPERFAMILY SSF48150 4 184 6.12E-74 T 18-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RU84_09970 772a42f6c5e2fff3f492c40b8c7a342d 344 PIRSF PIRSF005508 1 344 3.5E-133 T 18-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RU84_09970 772a42f6c5e2fff3f492c40b8c7a342d 344 Gene3D G3DSA:1.20.1530.20 2 340 1.0E-24 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_09970 772a42f6c5e2fff3f492c40b8c7a342d 344 Pfam PF01758 Sodium Bile acid symporter family 51 247 8.2E-62 T 18-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RU84_09970 772a42f6c5e2fff3f492c40b8c7a342d 344 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 6 334 1.8E-129 T 18-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 RU84_13495 526a1333d811ec0a35b37e136480e93f 229 Pfam PF05866 Endodeoxyribonuclease RusA 103 191 6.5E-6 T 18-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 RU84_13495 526a1333d811ec0a35b37e136480e93f 229 SUPERFAMILY SSF103084 78 204 3.27E-8 T 18-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 RU84_13495 526a1333d811ec0a35b37e136480e93f 229 Gene3D G3DSA:3.30.1330.70 76 210 5.0E-10 T 18-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 RU84_01215 85b65602bda82c4e6aea26fa9e80c1f8 205 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 203 35.41 T 18-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RU84_01215 85b65602bda82c4e6aea26fa9e80c1f8 205 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 203 7.8E-71 T 18-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RU84_01215 85b65602bda82c4e6aea26fa9e80c1f8 205 PIRSF PIRSF000495 2 205 9.0E-72 T 18-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 RU84_01215 85b65602bda82c4e6aea26fa9e80c1f8 205 Pfam PF00117 Glutamine amidotransferase class-I 6 200 5.4E-22 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_01215 85b65602bda82c4e6aea26fa9e80c1f8 205 Gene3D G3DSA:3.40.50.880 1 205 2.5E-78 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_01215 85b65602bda82c4e6aea26fa9e80c1f8 205 SUPERFAMILY SSF52317 2 203 3.2E-59 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 SUPERFAMILY SSF46785 25 94 5.4E-11 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 Pfam PF09339 IclR helix-turn-helix domain 26 75 8.9E-16 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 Gene3D G3DSA:1.10.10.10 11 82 4.8E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 SMART SM00346 23 111 1.9E-32 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 SUPERFAMILY SSF55781 92 269 2.71E-39 T 18-10-2018 RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 Pfam PF01614 Bacterial transcriptional regulator 145 269 7.5E-40 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 Gene3D G3DSA:3.30.450.40 90 271 3.3E-49 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_10585 0d1eef78d12ac8744db7bc0702c492c1 271 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 20 270 8.0E-98 T 18-10-2018 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 RU84_07760 d732e5c389ca107ba0751719b2c788a8 334 Pfam PF00294 pfkB family carbohydrate kinase 47 317 8.6E-55 T 18-10-2018 IPR011611 Carbohydrate kinase PfkB RU84_07760 d732e5c389ca107ba0751719b2c788a8 334 Gene3D G3DSA:3.40.1190.20 7 314 2.9E-81 T 18-10-2018 IPR029056 Ribokinase-like RU84_07760 d732e5c389ca107ba0751719b2c788a8 334 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 273 286 - T 18-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RU84_07760 d732e5c389ca107ba0751719b2c788a8 334 Gene3D G3DSA:3.30.1110.10 14 133 2.9E-81 T 18-10-2018 RU84_07760 d732e5c389ca107ba0751719b2c788a8 334 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 62 86 - T 18-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RU84_07760 d732e5c389ca107ba0751719b2c788a8 334 SUPERFAMILY SSF53613 2 319 3.27E-77 T 18-10-2018 IPR029056 Ribokinase-like RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Gene3D G3DSA:3.40.190.10 103 274 3.1E-60 T 18-10-2018 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 PIRSF PIRSF001500 7 369 1.2E-135 T 18-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 SUPERFAMILY SSF53850 101 285 1.9E-61 T 18-10-2018 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Gene3D G3DSA:3.30.70.260 279 368 3.7E-28 T 18-10-2018 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 TIGRFAM TIGR01807 CM_P2: chorismate mutase 14 89 1.9E-26 T 18-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Pfam PF01842 ACT domain 287 351 1.9E-12 T 18-10-2018 IPR002912 ACT domain RU84_05875 f1b7b0c94df465334d87c4412d411209 369 SUPERFAMILY SSF48600 10 97 4.43E-20 T 18-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 252 274 - T 18-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 SUPERFAMILY SSF55021 271 366 1.55E-26 T 18-10-2018 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Gene3D G3DSA:1.20.59.10 14 100 1.9E-30 T 18-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Gene3D G3DSA:3.40.190.10 181 265 3.1E-60 T 18-10-2018 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 SMART SM00830 18 99 2.7E-29 T 18-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Pfam PF00800 Prephenate dehydratase 101 278 5.8E-63 T 18-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 RU84_05875 f1b7b0c94df465334d87c4412d411209 369 Pfam PF01817 Chorismate mutase type II 18 96 4.7E-22 T 18-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Gene3D G3DSA:3.30.300.10 12 271 3.4E-175 T 18-10-2018 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Gene3D G3DSA:3.30.300.10 6 234 3.4E-175 T 18-10-2018 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 375 2.7E-67 T 18-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 18-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 SUPERFAMILY SSF55973 111 233 6.67E-51 T 18-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Gene3D G3DSA:3.30.300.10 103 378 3.4E-175 T 18-10-2018 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 102 5.7E-42 T 18-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 SUPERFAMILY SSF55973 6 110 9.03E-46 T 18-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 6.2E-45 T 18-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 385 1.8E-188 T 18-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 386 57.72 T 18-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 PIRSF PIRSF000497 1 387 1.9E-172 T 18-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 18-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_09605 83c2901c04bdb4395c0a17121f9524c0 388 SUPERFAMILY SSF55973 234 387 1.73E-69 T 18-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 RU84_16175 eb3a5a23db1ce8c14d5c83e580eb818b 125 SUPERFAMILY SSF46785 13 115 1.95E-35 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_16175 eb3a5a23db1ce8c14d5c83e580eb818b 125 Gene3D G3DSA:1.10.10.10 1 118 1.3E-40 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16175 eb3a5a23db1ce8c14d5c83e580eb818b 125 Pfam PF01638 HxlR-like helix-turn-helix 23 112 2.6E-37 T 18-10-2018 IPR002577 Helix-turn-helix, HxlR type RU84_00980 02b9ff8d5afa095e4f748edb238ed171 107 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 8 102 8.8E-12 T 18-10-2018 IPR008407 Branched-chain amino acid transport, AzlD RU84_07585 412c698c96ea08836fc02fbd64c5d933 212 SUPERFAMILY SSF143081 22 201 6.41E-44 T 18-10-2018 IPR036590 SOS response associated peptidase-like RU84_07585 412c698c96ea08836fc02fbd64c5d933 212 Gene3D G3DSA:3.90.1680.10 1 210 4.0E-46 T 18-10-2018 IPR036590 SOS response associated peptidase-like RU84_07585 412c698c96ea08836fc02fbd64c5d933 212 Pfam PF02586 SOS response associated peptidase (SRAP) 23 187 9.8E-22 T 18-10-2018 IPR003738 SOS response associated peptidase (SRAP) RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 25 1362 0.0 T 18-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:1.10.40.90 379 421 2.5E-20 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Pfam PF05000 RNA polymerase Rpb1, domain 4 679 768 1.5E-19 T 18-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 SUPERFAMILY SSF64484 21 1362 0.0 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:2.40.50.100 1028 1122 1.1E-18 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:1.10.1790.20 1131 1310 1.4E-64 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:1.10.150.390 1312 1372 3.3E-27 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Pfam PF04998 RNA polymerase Rpb1, domain 5 771 1312 1.9E-77 T 18-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:1.10.132.30 646 795 1.2E-66 T 18-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Pfam PF04983 RNA polymerase Rpb1, domain 3 494 649 5.4E-30 T 18-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 SMART SM00663 240 519 3.5E-177 T 18-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:1.10.274.100 495 645 1.9E-41 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Pfam PF04997 RNA polymerase Rpb1, domain 1 21 347 3.6E-88 T 18-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:2.40.50.100 1147 1211 1.4E-64 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Gene3D G3DSA:2.40.50.100 953 1027 2.8E-26 T 18-10-2018 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 18 1373 19.098 T 18-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Pfam PF00623 RNA polymerase Rpb1, domain 2 349 389 1.3E-7 T 18-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_16955 ad77a8db59cffc25115e829f2941c314 1397 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 490 8.4E-27 T 18-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 SUPERFAMILY SSF55347 149 317 7.41E-46 T 18-10-2018 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 SMART SM00859 3 141 6.1E-61 T 18-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 343 42.632 T 18-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 141 3.7E-39 T 18-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 Gene3D G3DSA:3.30.360.10 147 317 4.9E-128 T 18-10-2018 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 SUPERFAMILY SSF51735 2 164 3.81E-56 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 166 320 9.3E-18 T 18-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 349 3.9E-129 T 18-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 18-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_07810 cc646af911445b1a26fa62c3d5abf42b 349 Gene3D G3DSA:3.40.50.720 4 335 4.9E-128 T 18-10-2018 RU84_08350 a1438f4da9ff7dfa0e33bed56b6008a3 447 Pfam PF07690 Major Facilitator Superfamily 19 387 1.4E-40 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_08350 a1438f4da9ff7dfa0e33bed56b6008a3 447 Gene3D G3DSA:1.20.1250.20 236 441 6.5E-32 T 18-10-2018 RU84_08350 a1438f4da9ff7dfa0e33bed56b6008a3 447 Gene3D G3DSA:1.20.1250.20 3 206 1.2E-24 T 18-10-2018 RU84_08350 a1438f4da9ff7dfa0e33bed56b6008a3 447 SUPERFAMILY SSF103473 5 437 6.28E-70 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_14430 e80f84b8d8f221cecc2e5dffb1051587 255 Pfam PF08543 Phosphomethylpyrimidine kinase 12 241 5.7E-67 T 18-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 RU84_14430 e80f84b8d8f221cecc2e5dffb1051587 255 SUPERFAMILY SSF53613 2 240 2.29E-59 T 18-10-2018 IPR029056 Ribokinase-like RU84_14430 e80f84b8d8f221cecc2e5dffb1051587 255 Gene3D G3DSA:3.40.1190.20 1 237 1.4E-77 T 18-10-2018 IPR029056 Ribokinase-like RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 ProSitePatterns PS00552 MerR-type HTH domain signature. 13 35 - T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 22 35 5.3E-11 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 45 65 5.3E-11 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 11 22 5.3E-11 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 Pfam PF09278 MerR, DNA binding 53 117 1.0E-14 T 18-10-2018 IPR015358 Transcription regulator MerR, DNA binding RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 10 148 1.2E-64 T 18-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 Gene3D G3DSA:1.10.1660.10 2 133 1.3E-33 T 18-10-2018 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 SMART SM00422 10 78 4.2E-24 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 SUPERFAMILY SSF46955 10 132 9.89E-29 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_10840 a76ce5ef69e2678b217693aa360dc235 150 Pfam PF00376 MerR family regulatory protein 11 47 2.8E-14 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_09500 1c1a8bc92d7698c6121c9cccd424adb0 188 SUPERFAMILY SSF48498 76 181 3.25E-9 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_09500 1c1a8bc92d7698c6121c9cccd424adb0 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 5.5E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_09500 1c1a8bc92d7698c6121c9cccd424adb0 188 SUPERFAMILY SSF46689 3 70 2.57E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09500 1c1a8bc92d7698c6121c9cccd424adb0 188 Gene3D G3DSA:1.10.357.10 1 185 6.7E-38 T 18-10-2018 RU84_09500 1c1a8bc92d7698c6121c9cccd424adb0 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 5.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_09500 1c1a8bc92d7698c6121c9cccd424adb0 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 5.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 302 318 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 116 136 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 438 454 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 333 353 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 6 19 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 358 377 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 34 46 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 PRINTS PR00301 70kDa heat shock protein signature 175 185 6.6E-44 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 SUPERFAMILY SSF53067 7 161 5.26E-45 T 18-10-2018 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 Gene3D G3DSA:3.90.640.10 201 277 7.9E-103 T 18-10-2018 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 SUPERFAMILY SSF100920 356 506 2.09E-33 T 18-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 169 182 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 Gene3D G3DSA:3.30.420.40 8 344 7.9E-103 T 18-10-2018 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 SUPERFAMILY SSF53067 164 348 5.25E-40 T 18-10-2018 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 Gene3D G3DSA:2.60.34.10 347 527 4.8E-37 T 18-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 305 319 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 Gene3D G3DSA:3.30.420.40 162 335 7.9E-103 T 18-10-2018 RU84_04800 adb169dc98461ed3c02ed84538b66128 566 Pfam PF00012 Hsp70 protein 8 519 4.6E-120 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 406 153.821 T 18-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 Gene3D G3DSA:3.60.70.12 7 276 7.7E-90 T 18-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 Gene3D G3DSA:3.10.20.340 277 406 5.6E-45 T 18-10-2018 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 31 404 1.0E-177 T 18-10-2018 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 SUPERFAMILY SSF56266 14 403 6.67E-140 T 18-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 Pfam PF01960 ArgJ family 20 406 8.2E-144 T 18-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RU84_14990 57f58c238fca9eaffd41b42cd5e83375 406 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 12 406 8.2E-126 T 18-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 RU84_08170 edfa00425416852cae34d4b330900c20 524 SUPERFAMILY SSF53720 18 516 1.96E-102 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_08170 edfa00425416852cae34d4b330900c20 524 Gene3D G3DSA:3.40.605.10 42 517 6.4E-204 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_08170 edfa00425416852cae34d4b330900c20 524 Pfam PF00171 Aldehyde dehydrogenase family 15 456 6.3E-50 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_08170 edfa00425416852cae34d4b330900c20 524 Gene3D G3DSA:3.40.309.10 265 452 6.4E-204 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 Gene3D G3DSA:2.140.10.10 160 565 2.1E-113 T 18-10-2018 RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 Pfam PF01011 PQQ enzyme repeat 444 473 1.3E-5 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 Pfam PF01011 PQQ enzyme repeat 727 764 2.3E-7 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 Pfam PF13360 PQQ-like domain 217 394 1.8E-6 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 SUPERFAMILY SSF50998 162 798 2.09E-152 T 18-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 SMART SM00564 217 249 1.5E-4 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 SMART SM00564 414 463 62.0 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 SMART SM00564 721 754 0.0097 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 SMART SM00564 287 319 120.0 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 SMART SM00564 345 385 0.053 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 13 798 0.0 T 18-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 409 430 - T 18-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 Gene3D G3DSA:2.140.10.10 571 801 2.6E-34 T 18-10-2018 RU84_03210 936bd9b0afedfa9b3f00434cec6b4604 801 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 165 193 - T 18-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 Hamap MF_00258 Glutamate racemase [murI]. 6 258 32.476 T 18-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 SUPERFAMILY SSF53681 111 261 1.42E-32 T 18-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 TIGRFAM TIGR00067 glut_race: glutamate racemase 8 236 2.9E-61 T 18-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 182 192 - T 18-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 Gene3D G3DSA:3.40.50.1860 7 243 6.7E-78 T 18-10-2018 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 Gene3D G3DSA:3.40.50.1860 98 209 6.7E-78 T 18-10-2018 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 217 8.9E-33 T 18-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 73 81 - T 18-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_00420 562536e2d7b7d2f70c27b802850be380 266 SUPERFAMILY SSF53681 7 109 3.92E-30 T 18-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 18-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 Gene3D G3DSA:3.40.50.720 136 323 4.5E-132 T 18-10-2018 RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 Gene3D G3DSA:3.40.50.720 3 369 4.5E-132 T 18-10-2018 RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 371 3.2E-73 T 18-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 SUPERFAMILY SSF52283 1 167 2.55E-48 T 18-10-2018 RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 SMART SM01002 145 316 1.5E-76 T 18-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 169 194 - T 18-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 SMART SM01003 4 136 5.0E-54 T 18-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 2.0E-38 T 18-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal RU84_15455 9baf6c4e49e8f017c294ce6c178d4788 375 SUPERFAMILY SSF51735 136 321 1.38E-36 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_13195 67e286b07f5ad44074ae4c14c869a6cb 172 Gene3D G3DSA:2.60.200.60 3 86 9.4E-9 T 18-10-2018 RU84_13195 67e286b07f5ad44074ae4c14c869a6cb 172 Pfam PF05488 PAAR motif 11 78 5.6E-16 T 18-10-2018 IPR008727 PAAR motif RU84_07375 9e1b9585ee85f5e9f76ef493389f48b5 122 SUPERFAMILY SSF75169 1 122 2.36E-29 T 18-10-2018 IPR027396 DsrEFH-like RU84_07375 9e1b9585ee85f5e9f76ef493389f48b5 122 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 3 122 1.3E-35 T 18-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 RU84_07375 9e1b9585ee85f5e9f76ef493389f48b5 122 Pfam PF02635 DsrE/DsrF-like family 1 122 1.5E-21 T 18-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein RU84_07375 9e1b9585ee85f5e9f76ef493389f48b5 122 Gene3D G3DSA:3.40.1260.10 1 122 3.9E-36 T 18-10-2018 IPR027396 DsrEFH-like RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 497 521 1.5E-7 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 377 399 1.5E-7 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 Gene3D G3DSA:3.50.50.60 473 627 1.7E-115 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 SUPERFAMILY SSF51905 465 652 3.69E-21 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 637 1.7E-22 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 2.3E-88 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 3.9E-17 T 18-10-2018 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 461 479 3.9E-17 T 18-10-2018 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 620 636 3.9E-17 T 18-10-2018 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 501 519 3.9E-17 T 18-10-2018 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 SUPERFAMILY SSF51971 334 522 4.36E-39 T 18-10-2018 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 Gene3D G3DSA:3.40.50.720 376 667 1.7E-115 T 18-10-2018 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 Gene3D G3DSA:3.20.20.70 3 369 8.8E-127 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_07850 3a3f0c50c511c079be1a6c92c9638f8c 674 SUPERFAMILY SSF51395 4 363 1.38E-112 T 18-10-2018 RU84_19130 7abf9ba7392815238ce7523d78c72aef 213 SUPERFAMILY SSF101082 28 196 2.88E-28 T 18-10-2018 RU84_19130 7abf9ba7392815238ce7523d78c72aef 213 Pfam PF07996 Type IV secretion system proteins 28 196 1.1E-24 T 18-10-2018 IPR014158 Type IV secretion system, VirB5 RU84_19130 7abf9ba7392815238ce7523d78c72aef 213 Gene3D G3DSA:1.20.58.430 23 199 4.4E-27 T 18-10-2018 IPR023220 Type IV secretion system, VirB5-domain RU84_00315 94b7e214b1f435d0191812e6164bf21e 312 Gene3D G3DSA:1.20.1530.20 1 309 8.8E-120 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_00315 94b7e214b1f435d0191812e6164bf21e 312 Pfam PF01758 Sodium Bile acid symporter family 43 219 2.5E-46 T 18-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RU84_02800 a54f32ae94d1393f38d9e27cef12ee09 437 Pfam PF05954 Phage late control gene D protein (GPD) 109 335 2.0E-11 T 18-10-2018 RU84_02800 a54f32ae94d1393f38d9e27cef12ee09 437 SUPERFAMILY SSF69279 25 196 7.37E-21 T 18-10-2018 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 SUPERFAMILY SSF52540 75 352 8.75E-91 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 SMART SM00382 140 331 3.2E-4 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 346 1.5E-62 T 18-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 5.6E-20 T 18-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 SUPERFAMILY SSF50615 2 73 8.11E-25 T 18-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 SUPERFAMILY SSF47917 349 463 3.4E-53 T 18-10-2018 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 Gene3D G3DSA:3.40.50.300 74 348 1.8E-112 T 18-10-2018 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 464 3.1E-253 T 18-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 337 346 - T 18-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 Gene3D G3DSA:2.40.10.170 1 73 7.2E-30 T 18-10-2018 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 Gene3D G3DSA:1.10.1140.10 349 464 9.5E-58 T 18-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17545 754b2ac80b8a8892fca39420b5acc2a7 464 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 56.828 T 18-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 SUPERFAMILY SSF55874 388 519 4.32E-27 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_17210 f9a168371b208b1d7c973437147c6e61 522 Gene3D G3DSA:3.30.450.20 182 254 1.1E-5 T 18-10-2018 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 Pfam PF00989 PAS fold 203 250 5.9E-5 T 18-10-2018 IPR013767 PAS fold GO:0006355 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 SUPERFAMILY SSF47384 303 376 7.65E-13 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 SMART SM00387 416 522 5.3E-24 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_17210 f9a168371b208b1d7c973437147c6e61 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 454 468 1.3E-8 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 472 482 1.3E-8 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 1.3E-8 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 1.3E-8 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 Gene3D G3DSA:1.10.287.130 296 375 8.3E-16 T 18-10-2018 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 Pfam PF00512 His Kinase A (phospho-acceptor) domain 313 375 7.6E-14 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_17210 f9a168371b208b1d7c973437147c6e61 522 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 417 518 6.7E-16 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_17210 f9a168371b208b1d7c973437147c6e61 522 SUPERFAMILY SSF55785 192 241 1.07E-5 T 18-10-2018 IPR035965 PAS domain superfamily RU84_17210 f9a168371b208b1d7c973437147c6e61 522 Gene3D G3DSA:3.30.565.10 380 521 6.4E-29 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_17210 f9a168371b208b1d7c973437147c6e61 522 SMART SM00388 313 377 8.5E-13 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_18645 2faa348ad1634107f6aaff3563809dbe 179 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 8 169 3.3E-21 T 18-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_18645 2faa348ad1634107f6aaff3563809dbe 179 Pfam PF00929 Exonuclease 7 164 6.1E-26 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_18645 2faa348ad1634107f6aaff3563809dbe 179 SMART SM00479 4 175 1.8E-26 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_18645 2faa348ad1634107f6aaff3563809dbe 179 SUPERFAMILY SSF53098 5 172 2.81E-40 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_18645 2faa348ad1634107f6aaff3563809dbe 179 Gene3D G3DSA:3.30.420.10 2 173 1.2E-38 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10210 4e424f14181862b3613cf813e3eac605 307 SUPERFAMILY SSF51161 112 290 3.74E-44 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_10210 4e424f14181862b3613cf813e3eac605 307 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 194 229 8.3E-4 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_10210 4e424f14181862b3613cf813e3eac605 307 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 249 283 1.2E-6 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_10210 4e424f14181862b3613cf813e3eac605 307 PIRSF PIRSF000441 123 305 2.1E-51 T 18-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RU84_10210 4e424f14181862b3613cf813e3eac605 307 Gene3D G3DSA:2.160.10.10 190 304 4.2E-29 T 18-10-2018 RU84_10210 4e424f14181862b3613cf813e3eac605 307 Gene3D G3DSA:1.10.3130.10 33 189 9.4E-51 T 18-10-2018 RU84_10210 4e424f14181862b3613cf813e3eac605 307 Pfam PF06426 Serine acetyltransferase, N-terminal 83 159 9.1E-5 T 18-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 Pfam PF00919 Uncharacterized protein family UPF0004 32 132 1.0E-28 T 18-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 32 470 1.4E-141 T 18-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 Pfam PF04055 Radical SAM superfamily 186 360 1.5E-28 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 Gene3D G3DSA:3.80.30.20 181 415 2.0E-81 T 18-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 186 206 - T 18-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 SMART SM00729 182 402 1.2E-59 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 SUPERFAMILY SSF102114 165 408 1.7E-61 T 18-10-2018 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 31 476 69.619 T 18-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 Gene3D G3DSA:3.40.50.12160 31 165 2.4E-34 T 18-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 Pfam PF01938 TRAM domain 414 475 7.9E-8 T 18-10-2018 IPR002792 TRAM domain RU84_02295 f728509f2038897f6da5c6a47a09d9c3 483 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 32 470 2.0E-175 T 18-10-2018 RU84_07180 bb73d0a13be940c2a1ac2713fadf4375 385 Gene3D G3DSA:3.40.50.1970 1 185 5.2E-50 T 18-10-2018 RU84_07180 bb73d0a13be940c2a1ac2713fadf4375 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 375 1.5E-110 T 18-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RU84_07180 bb73d0a13be940c2a1ac2713fadf4375 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_07180 bb73d0a13be940c2a1ac2713fadf4375 385 Gene3D G3DSA:1.20.1090.10 186 384 5.4E-61 T 18-10-2018 RU84_07180 bb73d0a13be940c2a1ac2713fadf4375 385 SUPERFAMILY SSF56796 2 384 4.06E-116 T 18-10-2018 RU84_10085 cb64b425e20b800349bfedbb479239da 305 SUPERFAMILY SSF46785 7 81 4.35E-9 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10085 cb64b425e20b800349bfedbb479239da 305 Gene3D G3DSA:1.10.10.10 5 89 1.1E-10 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10085 cb64b425e20b800349bfedbb479239da 305 Pfam PF03466 LysR substrate binding domain 97 297 8.5E-31 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10085 cb64b425e20b800349bfedbb479239da 305 Gene3D G3DSA:3.40.190.290 98 302 1.1E-33 T 18-10-2018 RU84_10085 cb64b425e20b800349bfedbb479239da 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 61 4.7E-9 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10085 cb64b425e20b800349bfedbb479239da 305 SUPERFAMILY SSF53850 98 295 2.08E-25 T 18-10-2018 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 SUPERFAMILY SSF47203 241 395 1.47E-32 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 131 226 1.6E-23 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 243 392 2.7E-39 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 SUPERFAMILY SSF56645 6 254 2.23E-46 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 Gene3D G3DSA:1.20.140.10 248 398 3.4E-31 T 18-10-2018 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 Gene3D G3DSA:1.10.540.10 1 128 4.3E-5 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_09105 58aa2041034e59b5c523e5b39da398b2 401 Gene3D G3DSA:2.40.110.10 130 247 2.2E-36 T 18-10-2018 RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 ProSitePatterns PS00194 Thioredoxin family active site. 506 524 - T 18-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 Pfam PF00085 Thioredoxin 487 594 7.1E-8 T 18-10-2018 IPR013766 Thioredoxin domain GO:0045454 RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 Gene3D G3DSA:3.40.30.10 473 601 2.1E-22 T 18-10-2018 RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 Gene3D G3DSA:2.60.40.1250 22 150 6.0E-32 T 18-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 210 409 5.6E-17 T 18-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 SUPERFAMILY SSF74863 27 135 3.53E-28 T 18-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 SUPERFAMILY SSF52833 477 595 1.89E-17 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_00675 b41a67603e6a7540290272b9b4277a6f 604 Pfam PF11412 Disulphide bond corrector protein DsbC 28 135 2.5E-27 T 18-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain RU84_11185 edcb69ed24525af6180315ab08c0e8e4 205 PIRSF PIRSF006324 1 205 2.1E-51 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_11185 edcb69ed24525af6180315ab08c0e8e4 205 Pfam PF01810 LysE type translocator 15 204 2.8E-31 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 Gene3D G3DSA:3.30.160.20 160 230 1.9E-18 T 18-10-2018 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 SMART SM00358 162 229 2.4E-18 T 18-10-2018 IPR014720 Double-stranded RNA-binding domain RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 SMART SM00535 25 155 1.3E-50 T 18-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 Hamap MF_00104 Ribonuclease 3 [rnc]. 13 225 29.17 T 18-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 Pfam PF00035 Double-stranded RNA binding motif 162 228 2.2E-11 T 18-10-2018 IPR014720 Double-stranded RNA-binding domain RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 Pfam PF14622 Ribonuclease-III-like 24 146 3.0E-33 T 18-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 SUPERFAMILY SSF54768 114 228 6.13E-27 T 18-10-2018 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 SUPERFAMILY SSF69065 12 164 1.66E-48 T 18-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 227 2.8E-70 T 18-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 Gene3D G3DSA:1.10.1520.10 9 154 6.6E-45 T 18-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 RU84_04745 d1aff3c4ef12f9759c0ecd94352d8467 230 ProSitePatterns PS00517 Ribonuclease III family signature. 43 51 - T 18-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 RU84_10525 12bdb4cb65924970b664a696f4082116 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 378 1.2E-48 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 SUPERFAMILY SSF47203 229 380 1.08E-55 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 Gene3D G3DSA:1.10.540.10 4 119 3.9E-28 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 Gene3D G3DSA:1.20.140.10 237 383 3.9E-55 T 18-10-2018 RU84_10525 12bdb4cb65924970b664a696f4082116 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 Gene3D G3DSA:2.40.110.10 120 236 2.8E-40 T 18-10-2018 RU84_10525 12bdb4cb65924970b664a696f4082116 383 SUPERFAMILY SSF56645 6 243 6.94E-76 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 PIRSF PIRSF016578 2 83 8.4E-5 T 18-10-2018 RU84_10525 12bdb4cb65924970b664a696f4082116 383 PIRSF PIRSF016578 226 382 1.0E-12 T 18-10-2018 RU84_10525 12bdb4cb65924970b664a696f4082116 383 PIRSF PIRSF016578 110 199 21.0 T 18-10-2018 RU84_10525 12bdb4cb65924970b664a696f4082116 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 4.9E-27 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_10525 12bdb4cb65924970b664a696f4082116 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 217 1.1E-27 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_16230 620b892be8e9432db16f978d244eff23 420 Gene3D G3DSA:1.20.58.2200 357 419 1.4E-6 T 18-10-2018 IPR038440 FimV, C-terminal domain superfamily RU84_11495 9e9eaf827c840dcb4f61a56a220403c3 388 SUPERFAMILY SSF55681 7 319 8.22E-48 T 18-10-2018 RU84_11495 9e9eaf827c840dcb4f61a56a220403c3 388 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 367 25.912 T 18-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 RU84_11495 9e9eaf827c840dcb4f61a56a220403c3 388 Pfam PF13393 Histidyl-tRNA synthetase 12 322 1.2E-98 T 18-10-2018 RU84_11495 9e9eaf827c840dcb4f61a56a220403c3 388 Gene3D G3DSA:3.30.930.10 4 326 2.0E-57 T 18-10-2018 RU84_11495 9e9eaf827c840dcb4f61a56a220403c3 388 PIRSF PIRSF001549 318 379 270.0 T 18-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 RU84_11495 9e9eaf827c840dcb4f61a56a220403c3 388 PIRSF PIRSF001549 6 352 1.1E-31 T 18-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 RU84_14910 2bf64d5742d10ada1f9b96d173f5b5f6 309 SUPERFAMILY SSF46785 2 107 1.41E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_14910 2bf64d5742d10ada1f9b96d173f5b5f6 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.2E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14910 2bf64d5742d10ada1f9b96d173f5b5f6 309 Pfam PF03466 LysR substrate binding domain 85 283 1.7E-24 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_14910 2bf64d5742d10ada1f9b96d173f5b5f6 309 Gene3D G3DSA:3.40.190.290 91 297 1.8E-30 T 18-10-2018 RU84_14910 2bf64d5742d10ada1f9b96d173f5b5f6 309 Gene3D G3DSA:1.10.10.10 1 90 5.8E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14910 2bf64d5742d10ada1f9b96d173f5b5f6 309 SUPERFAMILY SSF53850 87 296 3.12E-25 T 18-10-2018 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 Gene3D G3DSA:3.20.20.70 2 304 1.1E-65 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 Pfam PF00701 Dihydrodipicolinate synthetase family 5 301 3.5E-42 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 9.0E-7 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 9.0E-7 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 PRINTS PR00146 Dihydrodipicolinate synthase signature 135 152 9.0E-7 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 PIRSF PIRSF001365 1 312 4.9E-65 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 SMART SM01130 4 303 3.1E-66 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_13160 84a313c237d5021fa1dc6401101b00e9 314 SUPERFAMILY SSF51569 2 303 6.91E-66 T 18-10-2018 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 Gene3D G3DSA:3.90.180.10 6 364 1.3E-148 T 18-10-2018 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 SMART SM00829 12 367 2.2E-4 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 9.7E-220 T 18-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 2.7E-26 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 SUPERFAMILY SSF50129 1 184 1.42E-70 T 18-10-2018 IPR011032 GroES-like superfamily RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 18-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 Pfam PF00107 Zinc-binding dehydrogenase 197 330 1.2E-23 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 Gene3D G3DSA:3.40.50.720 174 312 1.3E-148 T 18-10-2018 RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 SUPERFAMILY SSF50129 318 369 2.83E-12 T 18-10-2018 IPR011032 GroES-like superfamily RU84_18735 eb2e9e880d3032936013c82242ab66cb 370 SUPERFAMILY SSF51735 161 334 1.82E-44 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 18-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 PIRSF PIRSF006621 1 327 5.1E-104 T 18-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 Gene3D G3DSA:1.10.1200.80 251 326 2.7E-14 T 18-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 Gene3D G3DSA:3.20.20.70 6 249 1.5E-77 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 SUPERFAMILY SSF51395 10 318 1.23E-89 T 18-10-2018 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 4.1E-120 T 18-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 48.357 T 18-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 RU84_04880 803bc701ca3b16d6b864f3fd67b72832 341 Pfam PF01207 Dihydrouridine synthase (Dus) 13 314 3.2E-101 T 18-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.717 T 18-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 Gene3D G3DSA:3.30.860.10 1 91 3.6E-39 T 18-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 SUPERFAMILY SSF54570 3 84 5.23E-34 T 18-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.7E-43 T 18-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 PIRSF PIRSF002144 1 91 4.3E-31 T 18-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.2E-22 T 18-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.2E-22 T 18-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.2E-22 T 18-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 Pfam PF00203 Ribosomal protein S19 3 83 3.9E-35 T 18-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02030 63fb7b18fb813bfae2b4fba41d688e3a 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 18-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_01590 33b2a32375c34894eae265218551dce7 83 SUPERFAMILY SSF54565 1 75 5.36E-29 T 18-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01590 33b2a32375c34894eae265218551dce7 83 Gene3D G3DSA:3.30.1320.10 1 82 6.2E-32 T 18-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01590 33b2a32375c34894eae265218551dce7 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.603 T 18-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01590 33b2a32375c34894eae265218551dce7 83 Pfam PF00886 Ribosomal protein S16 8 68 6.3E-26 T 18-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01590 33b2a32375c34894eae265218551dce7 83 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 18-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_01590 33b2a32375c34894eae265218551dce7 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.2E-29 T 18-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03385 29834b15e58265de4e68d061d9144f56 178 SMART SM00260 27 164 2.3E-6 T 18-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RU84_03385 29834b15e58265de4e68d061d9144f56 178 Gene3D G3DSA:2.30.30.40 34 153 2.3E-21 T 18-10-2018 RU84_03385 29834b15e58265de4e68d061d9144f56 178 SUPERFAMILY SSF50341 27 168 6.28E-29 T 18-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 RU84_03385 29834b15e58265de4e68d061d9144f56 178 Gene3D G3DSA:2.40.50.180 50 116 2.3E-21 T 18-10-2018 RU84_03385 29834b15e58265de4e68d061d9144f56 178 Pfam PF01584 CheW-like domain 33 152 2.4E-24 T 18-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 RU84_01560 38f7d3d323e5efece8e025ef7718baef 184 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 30 1.0E-4 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01560 38f7d3d323e5efece8e025ef7718baef 184 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 9 144 3.2E-21 T 18-10-2018 IPR013362 Pilus modification type IV, PilV RU84_04270 bc2c70d478334ed1db3ed13e5b38722b 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 65 7.3E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04270 bc2c70d478334ed1db3ed13e5b38722b 205 Gene3D G3DSA:1.10.357.10 4 197 2.5E-16 T 18-10-2018 RU84_04270 bc2c70d478334ed1db3ed13e5b38722b 205 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_04270 bc2c70d478334ed1db3ed13e5b38722b 205 SUPERFAMILY SSF46689 6 80 5.49E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 Gene3D G3DSA:3.40.1450.10 82 312 1.4E-209 T 18-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 SUPERFAMILY SSF64158 82 310 6.54E-81 T 18-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 87 299 3.1E-77 T 18-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 SUPERFAMILY SSF53649 11 511 9.68E-71 T 18-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 PIRSF PIRSF001492 4 514 2.5E-198 T 18-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 9 512 49.001 T 18-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 Gene3D G3DSA:3.40.720.10 10 509 1.4E-209 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 11 511 2.0E-220 T 18-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 RU84_17225 582b8c539a9e385a077c8fe57f450141 515 Pfam PF01676 Metalloenzyme superfamily 11 499 6.0E-78 T 18-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 RU84_03665 ced6eac3e81d8e50593c5a75d024626c 395 SUPERFAMILY SSF54506 2 182 4.71E-73 T 18-10-2018 RU84_03665 ced6eac3e81d8e50593c5a75d024626c 395 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 4 395 3.5E-233 T 18-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 RU84_03665 ced6eac3e81d8e50593c5a75d024626c 395 Gene3D G3DSA:3.10.310.10 181 374 1.2E-152 T 18-10-2018 RU84_03665 ced6eac3e81d8e50593c5a75d024626c 395 Pfam PF04303 PrpF protein 6 391 3.0E-177 T 18-10-2018 IPR007400 PrpF protein RU84_03665 ced6eac3e81d8e50593c5a75d024626c 395 Gene3D G3DSA:3.10.310.10 11 388 1.2E-152 T 18-10-2018 RU84_03665 ced6eac3e81d8e50593c5a75d024626c 395 SUPERFAMILY SSF54506 189 393 2.12E-78 T 18-10-2018 RU84_14890 a873b021910d8826ad4fdf7d10a859c2 461 Gene3D G3DSA:2.40.160.60 34 461 1.6E-20 T 18-10-2018 RU84_14890 a873b021910d8826ad4fdf7d10a859c2 461 SUPERFAMILY SSF56935 24 461 9.77E-41 T 18-10-2018 RU84_09985 516c8c43c004bce39647d88ef26fd778 53 TIGRFAM TIGR03510 XapX: XapX domain 4 49 1.1E-19 T 18-10-2018 IPR020017 XapX domain RU84_09985 516c8c43c004bce39647d88ef26fd778 53 Pfam PF07235 Protein of unknown function (DUF1427) 2 51 2.2E-23 T 18-10-2018 IPR009872 Protein of unknown function DUF1427 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 Pfam PF00171 Aldehyde dehydrogenase family 5 449 4.9E-80 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 251 262 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 Gene3D G3DSA:3.40.605.10 25 449 1.2E-149 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 SUPERFAMILY SSF53720 9 474 3.01E-108 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 PIRSF PIRSF036492 3 484 6.3E-160 T 18-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 223 230 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_11755 32506f9eaebbf02db7d0d1e940d99181 486 Gene3D G3DSA:3.40.309.10 227 429 1.2E-149 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_16255 71d66207e5b7db57c7516e6a7af7eb3d 122 Gene3D G3DSA:1.20.1270.180 14 116 1.2E-8 T 18-10-2018 RU84_16255 71d66207e5b7db57c7516e6a7af7eb3d 122 Pfam PF07007 Lysozyme inhibitor LprI 22 102 8.3E-14 T 18-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal RU84_14495 b1bdeea14d40472c23499ee48aac892a 249 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 3 247 30.108 T 18-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 RU84_14495 b1bdeea14d40472c23499ee48aac892a 249 SUPERFAMILY SSF53335 10 182 1.67E-28 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_14495 b1bdeea14d40472c23499ee48aac892a 249 Gene3D G3DSA:3.40.50.150 33 248 1.7E-26 T 18-10-2018 RU84_14495 b1bdeea14d40472c23499ee48aac892a 249 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 11 247 2.1E-68 T 18-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 RU84_14495 b1bdeea14d40472c23499ee48aac892a 249 Pfam PF13489 Methyltransferase domain 25 180 4.6E-14 T 18-10-2018 RU84_12620 a634b7216b2608a1b989c4529bbb5ee1 369 Gene3D G3DSA:2.40.128.270 19 147 3.9E-13 T 18-10-2018 IPR038670 HslJ-like superfamily RU84_12620 a634b7216b2608a1b989c4529bbb5ee1 369 Gene3D G3DSA:2.40.128.270 148 261 6.9E-12 T 18-10-2018 IPR038670 HslJ-like superfamily RU84_12620 a634b7216b2608a1b989c4529bbb5ee1 369 Pfam PF03724 META domain 160 254 9.5E-15 T 18-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ RU84_12620 a634b7216b2608a1b989c4529bbb5ee1 369 Pfam PF03724 META domain 44 128 8.6E-17 T 18-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ RU84_12620 a634b7216b2608a1b989c4529bbb5ee1 369 Pfam PF14302 Domain of unknown function (DUF4377) 277 361 4.5E-22 T 18-10-2018 IPR025485 Domain of unknown function DUF4377 RU84_11705 2ef5417b51e4fa05a935a9bbef7904d8 129 Gene3D G3DSA:3.10.129.10 2 129 2.4E-25 T 18-10-2018 RU84_11705 2ef5417b51e4fa05a935a9bbef7904d8 129 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 12 123 6.5E-12 T 18-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RU84_11705 2ef5417b51e4fa05a935a9bbef7904d8 129 Pfam PF03061 Thioesterase superfamily 45 115 2.7E-11 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_11705 2ef5417b51e4fa05a935a9bbef7904d8 129 SUPERFAMILY SSF54637 5 129 8.87E-26 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_05845 563bda7046c21e581b11289d977ae41f 302 Gene3D G3DSA:2.60.200.30 131 267 1.4E-89 T 18-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RU84_05845 563bda7046c21e581b11289d977ae41f 302 Pfam PF01513 ATP-NAD kinase 55 273 4.4E-63 T 18-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RU84_05845 563bda7046c21e581b11289d977ae41f 302 Hamap MF_00361 NAD kinase [nadK]. 9 290 32.286 T 18-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 RU84_05845 563bda7046c21e581b11289d977ae41f 302 SUPERFAMILY SSF111331 10 293 1.44E-86 T 18-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily RU84_05845 563bda7046c21e581b11289d977ae41f 302 Gene3D G3DSA:3.40.50.10330 29 290 1.4E-89 T 18-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 RU84_08270 1b520647dbf78555371ee4f47f37b9a7 546 ProSitePatterns PS00455 Putative AMP-binding domain signature. 200 211 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_08270 1b520647dbf78555371ee4f47f37b9a7 546 Gene3D G3DSA:3.40.50.12780 13 446 1.4E-112 T 18-10-2018 RU84_08270 1b520647dbf78555371ee4f47f37b9a7 546 Gene3D G3DSA:3.30.300.310 451 546 2.1E-31 T 18-10-2018 RU84_08270 1b520647dbf78555371ee4f47f37b9a7 546 SUPERFAMILY SSF56801 18 545 1.02E-142 T 18-10-2018 RU84_08270 1b520647dbf78555371ee4f47f37b9a7 546 Pfam PF00501 AMP-binding enzyme 36 455 2.2E-103 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_08270 1b520647dbf78555371ee4f47f37b9a7 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 464 538 1.3E-18 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 SUPERFAMILY SSF100950 225 494 6.95E-85 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 494 1.1E-236 T 18-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 11 215 5.0E-32 T 18-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 Gene3D G3DSA:3.40.1080.20 336 477 5.7E-39 T 18-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 Gene3D G3DSA:3.30.750.70 248 329 6.4E-6 T 18-10-2018 RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 322 463 7.0E-41 T 18-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 Gene3D G3DSA:3.40.1080.10 13 187 1.2E-16 T 18-10-2018 RU84_01245 19c49ef48fe806b196aac37e0a3dd69c 504 SUPERFAMILY SSF100950 4 222 7.44E-75 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 SUPERFAMILY SSF46785 5 60 2.34E-11 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 2.4E-12 T 18-10-2018 RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 SMART SM00344 5 107 3.2E-17 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 Gene3D G3DSA:3.30.70.920 56 137 1.4E-7 T 18-10-2018 RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 1.5E-7 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 1.5E-7 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 1.5E-7 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 Gene3D G3DSA:1.10.10.10 2 55 1.7E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00875 1a4e0033c72fef0eda663e2e7c421cc0 137 SUPERFAMILY SSF54909 65 131 2.01E-5 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.7E-20 T 18-10-2018 RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 1.2E-18 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 Gene3D G3DSA:1.10.10.10 1 54 3.1E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 SUPERFAMILY SSF54909 61 150 2.55E-17 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 18-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 Gene3D G3DSA:3.30.70.920 55 137 4.2E-20 T 18-10-2018 RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 SMART SM00344 1 110 5.9E-47 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.3E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.3E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.3E-17 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_10280 feb708b1d3185473d6b804bbb51f162d 151 SUPERFAMILY SSF46785 1 61 9.48E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_12895 9808b9054008bcb02ee8656047451767 334 SUPERFAMILY SSF52518 23 192 3.0E-48 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_12895 9808b9054008bcb02ee8656047451767 334 SUPERFAMILY SSF52922 197 333 3.93E-29 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_12895 9808b9054008bcb02ee8656047451767 334 Gene3D G3DSA:3.40.50.970 6 197 7.0E-50 T 18-10-2018 RU84_12895 9808b9054008bcb02ee8656047451767 334 Pfam PF02780 Transketolase, C-terminal domain 203 325 5.8E-26 T 18-10-2018 IPR033248 Transketolase, C-terminal domain RU84_12895 9808b9054008bcb02ee8656047451767 334 Gene3D G3DSA:3.40.50.920 203 333 1.5E-33 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_12895 9808b9054008bcb02ee8656047451767 334 Pfam PF02779 Transketolase, pyrimidine binding domain 33 190 1.5E-33 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_12895 9808b9054008bcb02ee8656047451767 334 SMART SM00861 27 191 2.4E-43 T 18-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain RU84_09300 3ccc571cc9f67c45b7b7e4d6dd83cf0f 380 Gene3D G3DSA:3.40.50.300 25 200 5.1E-22 T 18-10-2018 RU84_09300 3ccc571cc9f67c45b7b7e4d6dd83cf0f 380 Hamap MF_01919 Cell division protein ZapE [zapE]. 15 373 50.987 T 18-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 RU84_09300 3ccc571cc9f67c45b7b7e4d6dd83cf0f 380 Pfam PF03969 AFG1-like ATPase 16 368 3.5E-129 T 18-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 RU84_09300 3ccc571cc9f67c45b7b7e4d6dd83cf0f 380 SUPERFAMILY SSF52540 58 198 9.06E-14 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06150 0dae58485c69e39a16b3300f3c6f776c 264 SUPERFAMILY SSF102588 44 256 6.41E-41 T 18-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RU84_06150 0dae58485c69e39a16b3300f3c6f776c 264 Pfam PF02585 GlcNAc-PI de-N-acetylase 48 173 2.6E-22 T 18-10-2018 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related Reactome: R-HSA-162710 RU84_06150 0dae58485c69e39a16b3300f3c6f776c 264 Gene3D G3DSA:3.40.50.10320 40 246 4.2E-36 T 18-10-2018 IPR024078 Putative deacetylase LmbE-like domain superfamily Reactome: R-HSA-162710 RU84_10100 15b8668110761284c2e500c6a39db135 310 SUPERFAMILY SSF52151 4 290 5.1E-49 T 18-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RU84_10100 15b8668110761284c2e500c6a39db135 310 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 295 2.3E-18 T 18-10-2018 IPR020801 Polyketide synthase, acyl transferase domain RU84_10100 15b8668110761284c2e500c6a39db135 310 SUPERFAMILY SSF55048 123 183 9.94E-12 T 18-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding RU84_10100 15b8668110761284c2e500c6a39db135 310 PIRSF PIRSF000446 1 304 2.4E-61 T 18-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 RU84_10100 15b8668110761284c2e500c6a39db135 310 Pfam PF00698 Acyl transferase domain 4 284 3.0E-28 T 18-10-2018 IPR014043 Acyl transferase RU84_10100 15b8668110761284c2e500c6a39db135 310 TIGRFAM TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit 4 299 7.2E-102 T 18-10-2018 IPR017554 Malonate decarboxylase, McdH subunit RU84_10100 15b8668110761284c2e500c6a39db135 310 Gene3D G3DSA:3.30.70.250 119 190 9.6E-66 T 18-10-2018 RU84_10100 15b8668110761284c2e500c6a39db135 310 Gene3D G3DSA:3.40.366.10 6 280 9.6E-66 T 18-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 RU84_05120 f9bcf54a67d8662f5be28eb7716d8022 459 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 249 455 2.1E-17 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_05120 f9bcf54a67d8662f5be28eb7716d8022 459 SUPERFAMILY SSF161098 204 446 8.11E-34 T 18-10-2018 IPR035906 MetI-like superfamily RU84_05120 f9bcf54a67d8662f5be28eb7716d8022 459 Gene3D G3DSA:1.10.3720.10 224 457 1.3E-36 T 18-10-2018 IPR035906 MetI-like superfamily RU84_05120 f9bcf54a67d8662f5be28eb7716d8022 459 Pfam PF12501 Phosphate ATP-binding cassette transporter 8 180 3.1E-34 T 18-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 RU84_05120 f9bcf54a67d8662f5be28eb7716d8022 459 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 165 454 1.7E-86 T 18-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 RU84_02050 e70fbba53c6ddc281f3eab06dd2f8ab1 65 Pfam PF00831 Ribosomal L29 protein 4 60 1.0E-19 T 18-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02050 e70fbba53c6ddc281f3eab06dd2f8ab1 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 4.0E-18 T 18-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02050 e70fbba53c6ddc281f3eab06dd2f8ab1 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.717 T 18-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02050 e70fbba53c6ddc281f3eab06dd2f8ab1 65 SUPERFAMILY SSF46561 1 63 4.45E-19 T 18-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02050 e70fbba53c6ddc281f3eab06dd2f8ab1 65 Gene3D G3DSA:1.10.287.310 1 63 2.8E-22 T 18-10-2018 RU84_01085 caecfba6a206c3b8e7e9dc84e4218b5c 183 SUPERFAMILY SSF46689 6 72 7.18E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_01085 caecfba6a206c3b8e7e9dc84e4218b5c 183 Gene3D G3DSA:1.10.357.10 4 178 2.7E-23 T 18-10-2018 RU84_01085 caecfba6a206c3b8e7e9dc84e4218b5c 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.9E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_01085 caecfba6a206c3b8e7e9dc84e4218b5c 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.9E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_01085 caecfba6a206c3b8e7e9dc84e4218b5c 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 56 1.7E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_05210 f10f39c25712a70709b5db33dd6c284c 729 SUPERFAMILY SSF103473 22 416 2.49E-21 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_05210 f10f39c25712a70709b5db33dd6c284c 729 Pfam PF07690 Major Facilitator Superfamily 31 417 1.6E-14 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_05210 f10f39c25712a70709b5db33dd6c284c 729 Gene3D G3DSA:2.60.40.10 491 586 2.2E-5 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_05210 f10f39c25712a70709b5db33dd6c284c 729 SUPERFAMILY SSF103473 625 726 1.23E-6 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_05210 f10f39c25712a70709b5db33dd6c284c 729 Gene3D G3DSA:1.20.1250.20 24 423 8.1E-11 T 18-10-2018 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 Gene3D G3DSA:3.30.1330.60 75 217 1.1E-47 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 SUPERFAMILY SSF103088 101 213 2.75E-39 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 Pfam PF00691 OmpA family 112 207 9.8E-26 T 18-10-2018 IPR006665 OmpA-like domain RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 PRINTS PR01021 OMPA domain signature 113 135 2.2E-16 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 PRINTS PR01021 OMPA domain signature 143 158 2.2E-16 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 PRINTS PR01021 OMPA domain signature 158 174 2.2E-16 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 ProSitePatterns PS01068 OmpA-like domain. 145 189 - T 18-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 158 175 2.1E-11 T 18-10-2018 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 196 216 2.1E-11 T 18-10-2018 RU84_13790 c8793cdc099b9f83237b3d2ea1ee7808 217 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 176 195 2.1E-11 T 18-10-2018 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 4.0E-89 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 8.6E-131 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 ProSitePatterns PS00099 Thiolases active site. 372 385 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 Pfam PF02803 Thiolase, C-terminal domain 269 389 5.1E-44 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 SUPERFAMILY SSF53901 3 268 5.76E-82 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 Gene3D G3DSA:3.40.47.10 5 274 7.5E-143 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 PIRSF PIRSF000429 1 391 1.3E-116 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 SUPERFAMILY SSF53901 269 390 1.11E-39 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_03235 e17317b4a9a663f650ea81fe0099410b 391 Gene3D G3DSA:3.40.47.10 126 388 7.5E-143 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_06650 912da3098c3e7c04d25c84903e0ef1cd 342 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 206 6.8E-35 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_06650 912da3098c3e7c04d25c84903e0ef1cd 342 SMART SM00342 251 334 1.7E-22 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_06650 912da3098c3e7c04d25c84903e0ef1cd 342 Pfam PF12833 Helix-turn-helix domain 258 335 3.8E-18 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_06650 912da3098c3e7c04d25c84903e0ef1cd 342 SUPERFAMILY SSF46689 287 336 3.4E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06650 912da3098c3e7c04d25c84903e0ef1cd 342 Gene3D G3DSA:1.10.10.60 238 341 7.9E-25 T 18-10-2018 RU84_07115 19653acfe36c997a1d0b59ddc310d6b6 297 SUPERFAMILY SSF46785 2 82 5.33E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07115 19653acfe36c997a1d0b59ddc310d6b6 297 Gene3D G3DSA:3.40.190.290 94 276 1.6E-25 T 18-10-2018 RU84_07115 19653acfe36c997a1d0b59ddc310d6b6 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 5.0E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_07115 19653acfe36c997a1d0b59ddc310d6b6 297 Gene3D G3DSA:1.10.10.10 1 87 3.9E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07115 19653acfe36c997a1d0b59ddc310d6b6 297 Pfam PF03466 LysR substrate binding domain 109 290 3.3E-20 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_07115 19653acfe36c997a1d0b59ddc310d6b6 297 SUPERFAMILY SSF53850 90 290 1.18E-24 T 18-10-2018 RU84_12865 16c75e14e3c9e2ba5bbb78e989dc6888 335 SUPERFAMILY SSF56436 63 331 1.06E-67 T 18-10-2018 IPR016187 C-type lectin fold RU84_12865 16c75e14e3c9e2ba5bbb78e989dc6888 335 Pfam PF03781 Sulfatase-modifying factor enzyme 1 63 331 7.0E-63 T 18-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 RU84_12865 16c75e14e3c9e2ba5bbb78e989dc6888 335 Gene3D G3DSA:3.90.1580.10 60 334 1.2E-76 T 18-10-2018 RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 Pfam PF02261 Aspartate decarboxylase 1 114 8.7E-46 T 18-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 3.3E-46 T 18-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 Gene3D G3DSA:2.40.40.20 1 126 1.7E-51 T 18-10-2018 RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 SUPERFAMILY SSF50692 1 122 6.21E-46 T 18-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-64 T 18-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 65.068 T 18-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RU84_14405 5c805f4ffd3dc62057d0e013a396cb30 126 PIRSF PIRSF006246 1 124 1.1E-46 T 18-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 RU84_03820 6f74c26a654a4777310b7232166a9919 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 9.2E-42 T 18-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03820 6f74c26a654a4777310b7232166a9919 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 18-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_03820 6f74c26a654a4777310b7232166a9919 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.7E-40 T 18-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03820 6f74c26a654a4777310b7232166a9919 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.256 T 18-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03820 6f74c26a654a4777310b7232166a9919 103 SUPERFAMILY SSF141091 1 101 1.83E-39 T 18-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_08725 9899f85883b14159f1ff3d05f0df1d49 202 Pfam PF02525 Flavodoxin-like fold 1 199 2.2E-46 T 18-10-2018 IPR003680 Flavodoxin-like fold RU84_08725 9899f85883b14159f1ff3d05f0df1d49 202 SUPERFAMILY SSF52218 1 201 1.07E-51 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_08725 9899f85883b14159f1ff3d05f0df1d49 202 Gene3D G3DSA:3.40.50.360 1 201 7.7E-59 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_08725 9899f85883b14159f1ff3d05f0df1d49 202 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 201 32.311 T 18-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 Gene3D G3DSA:3.30.70.920 62 145 4.8E-28 T 18-10-2018 RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 SMART SM00344 8 117 9.0E-47 T 18-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 SUPERFAMILY SSF46785 6 67 1.42E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 Pfam PF01037 Lrp/AsnC ligand binding domain 74 147 1.3E-27 T 18-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 55 7.0E-19 T 18-10-2018 RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 SUPERFAMILY SSF54909 72 152 1.74E-22 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 Gene3D G3DSA:1.10.10.10 2 61 1.5E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 3.7E-15 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 3.7E-15 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_06975 c83f1451969ea3bb0bf427f0b4b1883c 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 3.7E-15 T 18-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 RU84_05810 7f12834b29c9d93b7d8482eb4ec8b8b5 119 Pfam PF04076 Bacterial OB fold (BOF) protein 31 118 1.5E-23 T 18-10-2018 IPR005220 Bacterial OB-fold RU84_05810 7f12834b29c9d93b7d8482eb4ec8b8b5 119 SUPERFAMILY SSF101756 31 118 1.03E-25 T 18-10-2018 IPR036700 Bacterial OB-fold superfamily RU84_05810 7f12834b29c9d93b7d8482eb4ec8b8b5 119 Gene3D G3DSA:2.40.50.200 16 119 3.6E-28 T 18-10-2018 IPR036700 Bacterial OB-fold superfamily RU84_07710 6a336f6534ace763cbd470457ae23496 368 Gene3D G3DSA:3.40.50.300 162 353 7.6E-116 T 18-10-2018 RU84_07710 6a336f6534ace763cbd470457ae23496 368 SMART SM00382 163 343 5.6E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07710 6a336f6534ace763cbd470457ae23496 368 SMART SM00962 164 365 5.5E-123 T 18-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_07710 6a336f6534ace763cbd470457ae23496 368 Pfam PF00448 SRP54-type protein, GTPase domain 165 364 1.2E-77 T 18-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_07710 6a336f6534ace763cbd470457ae23496 368 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 93 364 1.5E-107 T 18-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RU84_07710 6a336f6534ace763cbd470457ae23496 368 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 92 365 60.139 T 18-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 RU84_07710 6a336f6534ace763cbd470457ae23496 368 SMART SM00963 68 149 1.2E-24 T 18-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_07710 6a336f6534ace763cbd470457ae23496 368 Gene3D G3DSA:1.20.120.140 65 363 7.6E-116 T 18-10-2018 RU84_07710 6a336f6534ace763cbd470457ae23496 368 Pfam PF02881 SRP54-type protein, helical bundle domain 83 145 7.2E-11 T 18-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_07710 6a336f6534ace763cbd470457ae23496 368 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 338 351 - T 18-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_07710 6a336f6534ace763cbd470457ae23496 368 SUPERFAMILY SSF47364 63 143 9.68E-20 T 18-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 RU84_07710 6a336f6534ace763cbd470457ae23496 368 SUPERFAMILY SSF52540 162 365 9.45E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 Gene3D G3DSA:1.25.50.20 603 898 5.4E-20 T 18-10-2018 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 Gene3D G3DSA:2.60.40.1730 27 229 5.7E-49 T 18-10-2018 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 Pfam PF11838 ERAP1-like C-terminal domain 562 880 3.6E-40 T 18-10-2018 IPR024571 ERAP1-like C-terminal domain RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 SUPERFAMILY SSF63737 32 229 1.2E-43 T 18-10-2018 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 Pfam PF01433 Peptidase family M1 domain 251 483 1.1E-71 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 Gene3D G3DSA:1.10.390.60 241 501 6.8E-83 T 18-10-2018 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 164 179 1.1E-23 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 297 307 1.1E-23 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 212 227 1.1E-23 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 332 347 1.1E-23 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 351 363 1.1E-23 T 18-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 RU84_05470 93bb4048daa37e9e6c0c6dbe8afb631e 899 SUPERFAMILY SSF55486 246 491 1.83E-72 T 18-10-2018 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 SUPERFAMILY SSF52374 9 334 4.91E-79 T 18-10-2018 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 Pfam PF00579 tRNA synthetases class I (W and Y) 7 288 4.5E-55 T 18-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 7 334 1.7E-71 T 18-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 Gene3D G3DSA:1.10.240.10 188 302 1.9E-104 T 18-10-2018 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 Gene3D G3DSA:3.40.50.620 10 329 1.9E-104 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 71 90 1.3E-21 T 18-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 20 36 1.3E-21 T 18-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 201 211 1.3E-21 T 18-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 149 170 1.3E-21 T 18-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 RU84_03965 d3553a6c672cef4d52bd9261eba80d24 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 16 25 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_03375 33c7dbfb88aff45051df9734550c654d 127 SUPERFAMILY SSF52172 6 126 1.71E-38 T 18-10-2018 IPR011006 CheY-like superfamily RU84_03375 33c7dbfb88aff45051df9734550c654d 127 Gene3D G3DSA:3.40.50.12740 7 127 9.0E-41 T 18-10-2018 RU84_03375 33c7dbfb88aff45051df9734550c654d 127 Pfam PF00072 Response regulator receiver domain 10 122 5.3E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03375 33c7dbfb88aff45051df9734550c654d 127 SMART SM00448 8 121 8.2E-39 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 210 1.3E-80 T 18-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 Gene3D G3DSA:3.30.160.40 219 304 1.7E-28 T 18-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 229 245 - T 18-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 Gene3D G3DSA:3.40.190.10 4 208 6.0E-87 T 18-10-2018 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 Gene3D G3DSA:3.40.190.10 101 200 6.0E-87 T 18-10-2018 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 225 293 9.7E-19 T 18-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 PIRSF PIRSF001438 1 305 1.9E-123 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 SUPERFAMILY SSF53850 2 216 8.36E-87 T 18-10-2018 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 39.442 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.0E-49 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.0E-49 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 1.0E-49 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.0E-49 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.0E-49 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 SUPERFAMILY SSF54782 219 304 1.15E-25 T 18-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17080 71f698d387d38e5aefc3f60685b83369 305 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 295 1.1E-115 T 18-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_00120 db07e7f0d65b03c31b152d658d241f2c 47 Pfam PF16951 Putative methionine and alanine importer, small subunit 1 35 2.5E-11 T 18-10-2018 IPR031596 Putative methionine and alanine importer, small subunit RU84_15530 f477b8118a4555513f8fe5825172c35c 130 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 3 129 8.6E-58 T 18-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 SUPERFAMILY SSF46955 3 121 6.59E-33 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_15530 f477b8118a4555513f8fe5825172c35c 130 Gene3D G3DSA:1.10.1660.10 1 126 4.0E-31 T 18-10-2018 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 Pfam PF13411 MerR HTH family regulatory protein 3 71 4.8E-21 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 5.2E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 5.2E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 5.2E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_15530 f477b8118a4555513f8fe5825172c35c 130 SMART SM00422 3 72 6.6E-25 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 SUPERFAMILY SSF52096 1 295 1.12E-59 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 1.6E-59 T 18-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 Gene3D G3DSA:1.10.1040.50 498 701 1.8E-57 T 18-10-2018 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 597 4.4E-16 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 SUPERFAMILY SSF48179 618 708 1.36E-17 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 SUPERFAMILY SSF51735 314 495 8.78E-55 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 Gene3D G3DSA:3.40.50.720 315 497 1.8E-65 T 18-10-2018 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 Gene3D G3DSA:3.90.226.10 1 313 4.0E-98 T 18-10-2018 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 SUPERFAMILY SSF48179 496 634 3.06E-21 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_03185 83eb454941b58d2e0cb6b675b15f8055 711 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 202 3.5E-31 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 SUPERFAMILY SSF46689 377 423 5.38E-5 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 208 223 - T 18-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 Pfam PF02954 Bacterial regulatory protein, Fis family 390 418 1.5E-4 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 335 344 - T 18-10-2018 IPR025944 Sigma-54 interaction domain, conserved site RU84_08765 c556842c471ce6b0bda0247664a062d4 423 SUPERFAMILY SSF52540 126 365 3.65E-64 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_08765 c556842c471ce6b0bda0247664a062d4 423 Gene3D G3DSA:1.10.8.60 293 372 9.8E-22 T 18-10-2018 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 Gene3D G3DSA:3.40.50.300 109 292 1.7E-61 T 18-10-2018 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 Gene3D G3DSA:1.10.10.60 375 423 5.1E-6 T 18-10-2018 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 Pfam PF00158 Sigma-54 interaction domain 126 288 1.7E-66 T 18-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 146 159 - T 18-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 RU84_08765 c556842c471ce6b0bda0247664a062d4 423 SMART SM00382 142 285 1.4E-8 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 Gene3D G3DSA:3.40.50.360 378 546 6.1E-38 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 SUPERFAMILY SSF63380 550 707 4.86E-19 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 Pfam PF03929 PepSY-associated TM region 7 368 4.0E-63 T 18-10-2018 IPR005625 PepSY-associated TM protein RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 SUPERFAMILY SSF52343 709 848 3.27E-36 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 807 815 1.6E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 652 659 1.6E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 784 800 1.6E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 740 749 1.6E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 716 735 1.6E-8 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 Pfam PF00258 Flavodoxin 396 521 1.4E-25 T 18-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 Pfam PF00175 Oxidoreductase NAD-binding domain 718 822 2.2E-9 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 SUPERFAMILY SSF52218 392 539 2.26E-38 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 Gene3D G3DSA:1.20.990.10 549 677 2.7E-7 T 18-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00369 Flavodoxin signature 395 408 1.8E-10 T 18-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00369 Flavodoxin signature 499 518 1.8E-10 T 18-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00369 Flavodoxin signature 474 484 1.8E-10 T 18-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 PRINTS PR00369 Flavodoxin signature 443 454 1.8E-10 T 18-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 RU84_03475 51bae37ab0f32c8ccc638738517d7b24 848 Gene3D G3DSA:3.40.50.80 706 848 4.5E-40 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_10630 d5b58e65f954cb128872f7bda1e0efa7 310 SMART SM00903 17 160 1.4E-54 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_10630 d5b58e65f954cb128872f7bda1e0efa7 310 Pfam PF01613 Flavin reductase like domain 18 159 7.3E-33 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_10630 d5b58e65f954cb128872f7bda1e0efa7 310 Gene3D G3DSA:2.30.110.10 2 163 8.7E-47 T 18-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RU84_10630 d5b58e65f954cb128872f7bda1e0efa7 310 Gene3D G3DSA:3.90.79.10 164 291 8.9E-31 T 18-10-2018 RU84_10630 d5b58e65f954cb128872f7bda1e0efa7 310 SUPERFAMILY SSF50475 11 160 1.23E-44 T 18-10-2018 RU84_05170 33b64664ede19fca99e96510dcb3339a 181 SUPERFAMILY SSF51161 5 177 3.88E-45 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_05170 33b64664ede19fca99e96510dcb3339a 181 Gene3D G3DSA:2.160.10.10 4 181 4.2E-56 T 18-10-2018 RU84_05170 33b64664ede19fca99e96510dcb3339a 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 1.2E-8 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_05170 33b64664ede19fca99e96510dcb3339a 181 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 13 47 4.9E-5 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_03300 64488ad2f532c2d252ba61ea77da0e9f 188 SUPERFAMILY SSF50486 4 188 1.73E-57 T 18-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 RU84_03300 64488ad2f532c2d252ba61ea77da0e9f 188 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 9 184 7.0E-53 T 18-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_03300 64488ad2f532c2d252ba61ea77da0e9f 188 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 6 187 2.0E-50 T 18-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_03300 64488ad2f532c2d252ba61ea77da0e9f 188 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 7 187 27.318 T 18-10-2018 IPR003180 Methylpurine-DNA glycosylase GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_03300 64488ad2f532c2d252ba61ea77da0e9f 188 Gene3D G3DSA:3.10.300.10 1 188 6.7E-58 T 18-10-2018 IPR036995 Methylpurine-DNA glycosylase superfamily GO:0003677|GO:0003905|GO:0006284 Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_15880 2d0a3fa4d3bbcab13284c992758c528e 183 SUPERFAMILY SSF48317 9 175 9.81E-38 T 18-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RU84_15880 2d0a3fa4d3bbcab13284c992758c528e 183 Gene3D G3DSA:1.20.144.10 62 173 1.2E-20 T 18-10-2018 RU84_15880 2d0a3fa4d3bbcab13284c992758c528e 183 SMART SM00014 63 173 4.4E-16 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_15880 2d0a3fa4d3bbcab13284c992758c528e 183 Pfam PF01569 PAP2 superfamily 67 175 4.5E-22 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 Gene3D G3DSA:1.20.140.10 366 512 8.4E-93 T 18-10-2018 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 SUPERFAMILY SSF56645 128 361 1.83E-43 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 366 507 1.5E-12 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 SUPERFAMILY SSF47203 366 517 4.04E-23 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 Gene3D G3DSA:2.40.110.10 241 365 8.4E-93 T 18-10-2018 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 132 238 1.5E-16 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 Pfam PF09317 Domain of unknown function (DUF1974) 520 804 2.2E-97 T 18-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 RU84_05590 e34e9d7f15b91902d334fcb51e46f969 821 Gene3D G3DSA:1.10.540.10 127 240 8.4E-93 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_18290 43b0d407a70aa54605a95b091f7d5481 301 SMART SM00235 159 301 0.0093 T 18-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 RU84_18290 43b0d407a70aa54605a95b091f7d5481 301 SUPERFAMILY SSF55486 221 296 2.65E-13 T 18-10-2018 RU84_18290 43b0d407a70aa54605a95b091f7d5481 301 Pfam PF00413 Matrixin 35 294 1.3E-11 T 18-10-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_18290 43b0d407a70aa54605a95b091f7d5481 301 PRINTS PR00138 Matrixin signature 253 278 8.2E-7 T 18-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_18290 43b0d407a70aa54605a95b091f7d5481 301 PRINTS PR00138 Matrixin signature 61 76 8.2E-7 T 18-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_08915 872e601a018d93f7e44ca99a085be295 196 Gene3D G3DSA:1.10.10.690 49 196 1.2E-28 T 18-10-2018 IPR027405 YidB-like RU84_08915 872e601a018d93f7e44ca99a085be295 196 Pfam PF06078 Bacterial protein of unknown function (DUF937) 17 171 6.1E-16 T 18-10-2018 IPR009282 Protein of unknown function DUF937 RU84_08915 872e601a018d93f7e44ca99a085be295 196 SUPERFAMILY SSF140804 54 195 8.37E-29 T 18-10-2018 IPR027405 YidB-like RU84_06720 5f30e069fc7d19678bde609b3c0b7901 473 SMART SM01230 149 394 1.1E-76 T 18-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_06720 5f30e069fc7d19678bde609b3c0b7901 473 SUPERFAMILY SSF55931 150 471 2.75E-86 T 18-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RU84_06720 5f30e069fc7d19678bde609b3c0b7901 473 Pfam PF00120 Glutamine synthetase, catalytic domain 151 470 1.5E-84 T 18-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 RU84_06720 5f30e069fc7d19678bde609b3c0b7901 473 Gene3D G3DSA:3.30.590.10 147 472 3.5E-86 T 18-10-2018 RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 Pfam PF13602 Zinc-binding dehydrogenase 193 333 8.4E-21 T 18-10-2018 RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 SUPERFAMILY SSF51735 118 283 2.97E-33 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 336 9.2E-166 T 18-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 Gene3D G3DSA:3.40.50.720 128 272 2.8E-105 T 18-10-2018 RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 SUPERFAMILY SSF50129 1 144 2.28E-32 T 18-10-2018 IPR011032 GroES-like superfamily RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 Gene3D G3DSA:3.90.180.10 22 333 2.8E-105 T 18-10-2018 RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 91 2.3E-7 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_16180 b7b0d9d4c614f008794d0047f8279612 336 SMART SM00829 10 333 1.1E-10 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_03430 901927cf5ca75ef179883525936028b2 122 Pfam PF04304 Protein of unknown function (DUF454) 4 117 4.8E-35 T 18-10-2018 IPR007401 Protein of unknown function DUF454 RU84_03430 901927cf5ca75ef179883525936028b2 122 PIRSF PIRSF016789 1 122 3.3E-29 T 18-10-2018 IPR007401 Protein of unknown function DUF454 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Pfam PF11604 Copper binding periplasmic protein CusF 425 487 5.3E-18 T 18-10-2018 IPR021647 Copper binding periplasmic protein CusF RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 SUPERFAMILY SSF111369 127 323 1.06E-13 T 18-10-2018 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Gene3D G3DSA:2.40.30.170 248 321 8.4E-30 T 18-10-2018 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Pfam PF00529 HlyD membrane-fusion protein of T1SS 31 384 2.5E-7 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Gene3D G3DSA:1.10.287.470 186 197 8.4E-30 T 18-10-2018 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 114 319 3.3E-65 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Gene3D G3DSA:2.40.420.20 322 418 9.2E-24 T 18-10-2018 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Gene3D G3DSA:2.40.50.320 419 495 9.5E-21 T 18-10-2018 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 208 392 1.3E-40 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_15560 a461dc1f3e9884d22dee41f9588f44b5 496 Gene3D G3DSA:2.40.50.100 198 247 8.4E-30 T 18-10-2018 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 SUPERFAMILY SSF53067 118 240 8.85E-26 T 18-10-2018 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 SUPERFAMILY SSF53067 4 112 7.51E-22 T 18-10-2018 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 Gene3D G3DSA:3.30.420.490 119 227 9.9E-48 T 18-10-2018 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 Gene3D G3DSA:3.30.420.40 6 234 9.9E-48 T 18-10-2018 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 242 19.235 T 18-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 Pfam PF03309 Type III pantothenate kinase 4 198 2.9E-43 T 18-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RU84_14565 c355ba616f11e5791eef7376ea2be195 244 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 4 235 4.9E-26 T 18-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 RU84_01205 a8ccbfe1020f8a88ea82f1b1b982ecdc 213 SUPERFAMILY SSF53098 14 196 5.06E-39 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_01205 a8ccbfe1020f8a88ea82f1b1b982ecdc 213 SMART SM00474 27 198 8.0E-14 T 18-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RU84_01205 a8ccbfe1020f8a88ea82f1b1b982ecdc 213 Pfam PF01612 3'-5' exonuclease 28 196 3.3E-24 T 18-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 RU84_01205 a8ccbfe1020f8a88ea82f1b1b982ecdc 213 Gene3D G3DSA:3.30.420.10 13 201 3.2E-40 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_10950 aa20b54184fe46f52270aa7a87df7223 415 Gene3D G3DSA:1.10.8.620 266 319 2.9E-46 T 18-10-2018 RU84_10950 aa20b54184fe46f52270aa7a87df7223 415 Gene3D G3DSA:3.40.710.10 159 385 2.9E-46 T 18-10-2018 RU84_10950 aa20b54184fe46f52270aa7a87df7223 415 Pfam PF13354 Beta-lactamase enzyme family 164 343 2.5E-16 T 18-10-2018 RU84_10950 aa20b54184fe46f52270aa7a87df7223 415 SUPERFAMILY SSF56601 136 392 7.15E-24 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_02595 a4046de7e6825b2355fe708127b065be 298 Pfam PF12146 Serine aminopeptidase, S33 30 259 1.3E-12 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_02595 a4046de7e6825b2355fe708127b065be 298 Gene3D G3DSA:1.10.10.800 141 223 2.0E-46 T 18-10-2018 RU84_02595 a4046de7e6825b2355fe708127b065be 298 Gene3D G3DSA:3.40.50.1820 15 276 2.0E-46 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_02595 a4046de7e6825b2355fe708127b065be 298 SUPERFAMILY SSF53474 4 296 1.34E-46 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 SUPERFAMILY SSF47336 524 597 3.8E-7 T 18-10-2018 IPR036736 ACP-like superfamily RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Gene3D G3DSA:2.160.10.10 727 856 9.1E-13 T 18-10-2018 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 627 1326 6.6E-218 T 18-10-2018 IPR012728 Non-ribosomal peptide synthetase, C-terminal RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Gene3D G3DSA:1.10.1200.10 516 601 2.1E-10 T 18-10-2018 IPR036736 ACP-like superfamily RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 SUPERFAMILY SSF56801 24 539 3.14E-141 T 18-10-2018 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 51 442 6.9E-117 T 18-10-2018 IPR010071 Amino acid adenylation domain RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 SUPERFAMILY SSF51161 729 847 6.24E-15 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 ProSitePatterns PS00455 Putative AMP-binding domain signature. 169 180 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Gene3D G3DSA:3.30.300.30 412 515 5.2E-29 T 18-10-2018 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Gene3D G3DSA:2.160.10.10 1227 1331 4.0E-11 T 18-10-2018 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Gene3D G3DSA:2.160.10.10 974 1101 1.7E-10 T 18-10-2018 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 SUPERFAMILY SSF51161 976 1092 4.16E-18 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Gene3D G3DSA:3.40.50.12780 19 411 9.5E-112 T 18-10-2018 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Pfam PF13193 AMP-binding enzyme C-terminal domain 426 502 8.2E-9 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Pfam PF00501 AMP-binding enzyme 30 418 6.1E-91 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 SUPERFAMILY SSF51161 1214 1328 2.36E-15 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_04235 0d8fb579b6c2f80b51f13695dac1973a 1332 Pfam PF00550 Phosphopantetheine attachment site 543 596 1.4E-4 T 18-10-2018 IPR009081 Phosphopantetheine binding ACP domain RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 SUPERFAMILY SSF50156 273 357 1.38E-12 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 574 722 8.6E-32 T 18-10-2018 IPR020992 Tail specific protease, C-terminal RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 Gene3D G3DSA:2.30.42.10 267 354 9.0E-13 T 18-10-2018 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 Pfam PF03572 Peptidase family S41 395 568 5.1E-40 T 18-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 236 589 2.5E-74 T 18-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 274 352 9.7E-10 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 SUPERFAMILY SSF52096 225 574 6.63E-54 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 SMART SM00245 360 570 2.8E-35 T 18-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 Gene3D G3DSA:3.90.226.10 359 588 4.1E-54 T 18-10-2018 RU84_15890 da0eaa8c71ed7a719049b7221d129d2b 727 SMART SM00228 276 356 2.1E-9 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 242 6.2E-54 T 18-10-2018 RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 SUPERFAMILY SSF51735 3 244 1.75E-69 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.4E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 4.4E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.4E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 4.4E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 4.4E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.4E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 Gene3D G3DSA:3.40.50.720 1 244 1.5E-67 T 18-10-2018 RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 1.3E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.3E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 1.3E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08070 327b1f967fd4c654a2191e560c8d1c70 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_17805 a1983c4fe320929453a4f71245f8f243 293 Gene3D G3DSA:1.10.10.10 4 85 2.8E-16 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17805 a1983c4fe320929453a4f71245f8f243 293 Pfam PF03466 LysR substrate binding domain 85 284 9.5E-29 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_17805 a1983c4fe320929453a4f71245f8f243 293 SUPERFAMILY SSF46785 3 109 3.43E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17805 a1983c4fe320929453a4f71245f8f243 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.1E-13 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_17805 a1983c4fe320929453a4f71245f8f243 293 Gene3D G3DSA:3.40.190.290 88 284 1.9E-29 T 18-10-2018 RU84_17805 a1983c4fe320929453a4f71245f8f243 293 SUPERFAMILY SSF53850 85 287 7.96E-33 T 18-10-2018 RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 SUPERFAMILY SSF46785 33 107 7.09E-14 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 SMART SM00346 33 123 1.6E-20 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 Gene3D G3DSA:1.10.10.10 22 101 4.6E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 Pfam PF09339 IclR helix-turn-helix domain 35 85 6.7E-16 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 SUPERFAMILY SSF55781 100 277 2.81E-36 T 18-10-2018 RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 Pfam PF01614 Bacterial transcriptional regulator 153 268 3.3E-12 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_10495 72658fc0456fb89c24c4a392b14bc837 280 Gene3D G3DSA:3.30.450.40 107 274 1.8E-30 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_13765 068e7e95a1c49af6b34da7f4838c41d1 260 Gene3D G3DSA:3.40.630.30 32 194 3.0E-16 T 18-10-2018 RU84_13765 068e7e95a1c49af6b34da7f4838c41d1 260 Pfam PF13444 Acetyltransferase (GNAT) domain 45 140 2.4E-16 T 18-10-2018 RU84_13765 068e7e95a1c49af6b34da7f4838c41d1 260 SUPERFAMILY SSF55729 25 229 1.11E-27 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_10475 2fc2d8a8ab76c2f65dde5c64aebdac84 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 103 123 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_10475 2fc2d8a8ab76c2f65dde5c64aebdac84 262 SUPERFAMILY SSF52096 10 261 1.19E-84 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10475 2fc2d8a8ab76c2f65dde5c64aebdac84 262 Gene3D G3DSA:3.90.226.10 9 204 5.4E-69 T 18-10-2018 RU84_10475 2fc2d8a8ab76c2f65dde5c64aebdac84 262 Gene3D G3DSA:1.10.12.10 205 261 5.1E-21 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_10475 2fc2d8a8ab76c2f65dde5c64aebdac84 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 261 5.4E-75 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_00005 b5771e169cf7621327f081b78d97a289 465 Pfam PF11638 DnaA N-terminal domain 2 60 4.0E-12 T 18-10-2018 IPR024633 DnaA N-terminal domain RU84_00005 b5771e169cf7621327f081b78d97a289 465 Pfam PF00308 Bacterial dnaA protein 129 347 4.5E-84 T 18-10-2018 IPR013317 Chromosomal replication initiator protein DnaA RU84_00005 b5771e169cf7621327f081b78d97a289 465 SUPERFAMILY SSF48295 362 464 4.97E-33 T 18-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RU84_00005 b5771e169cf7621327f081b78d97a289 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 195 209 1.1E-48 T 18-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RU84_00005 b5771e169cf7621327f081b78d97a289 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 227 241 1.1E-48 T 18-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RU84_00005 b5771e169cf7621327f081b78d97a289 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 163 183 1.1E-48 T 18-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RU84_00005 b5771e169cf7621327f081b78d97a289 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 423 442 1.1E-48 T 18-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RU84_00005 b5771e169cf7621327f081b78d97a289 465 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 261 288 1.1E-48 T 18-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like RU84_00005 b5771e169cf7621327f081b78d97a289 465 Gene3D G3DSA:1.10.1750.10 372 465 3.2E-31 T 18-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RU84_00005 b5771e169cf7621327f081b78d97a289 465 SUPERFAMILY SSF52540 130 342 3.03E-40 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00005 b5771e169cf7621327f081b78d97a289 465 SMART SM00382 162 292 1.1E-9 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_00005 b5771e169cf7621327f081b78d97a289 465 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 464 29.598 T 18-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RU84_00005 b5771e169cf7621327f081b78d97a289 465 SMART SM00760 373 442 5.0E-39 T 18-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RU84_00005 b5771e169cf7621327f081b78d97a289 465 ProSitePatterns PS01008 DnaA protein signature. 423 442 - T 18-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RU84_00005 b5771e169cf7621327f081b78d97a289 465 Gene3D G3DSA:3.40.50.300 128 295 8.8E-46 T 18-10-2018 RU84_00005 b5771e169cf7621327f081b78d97a289 465 Gene3D G3DSA:3.30.300.180 1 111 2.9E-19 T 18-10-2018 IPR038454 DnaA, N-terminal domain superfamily RU84_00005 b5771e169cf7621327f081b78d97a289 465 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 3 462 1.6E-153 T 18-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 RU84_00005 b5771e169cf7621327f081b78d97a289 465 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 374 442 5.0E-28 T 18-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 RU84_00005 b5771e169cf7621327f081b78d97a289 465 Gene3D G3DSA:1.10.8.60 296 366 1.1E-21 T 18-10-2018 RU84_10655 8025af58c6df1cc32ea291dd903ad920 190 SUPERFAMILY SSF81342 7 184 6.83E-36 T 18-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RU84_10655 8025af58c6df1cc32ea291dd903ad920 190 Pfam PF01292 Prokaryotic cytochrome b561 13 179 3.8E-26 T 18-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RU84_04630 d357e4c144cc1707f82a536acd8df443 153 Pfam PF00578 AhpC/TSA family 11 128 4.0E-25 T 18-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_04630 d357e4c144cc1707f82a536acd8df443 153 SUPERFAMILY SSF52833 6 151 3.62E-38 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_04630 d357e4c144cc1707f82a536acd8df443 153 PIRSF PIRSF000239 4 153 4.4E-23 T 18-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_04630 d357e4c144cc1707f82a536acd8df443 153 Gene3D G3DSA:3.40.30.10 4 151 1.1E-34 T 18-10-2018 RU84_12965 102be69ba9c68987b8b628834c7b5012 488 Gene3D G3DSA:3.40.309.10 252 445 3.5E-167 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_12965 102be69ba9c68987b8b628834c7b5012 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_12965 102be69ba9c68987b8b628834c7b5012 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_12965 102be69ba9c68987b8b628834c7b5012 488 SUPERFAMILY SSF53720 4 479 2.75E-157 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_12965 102be69ba9c68987b8b628834c7b5012 488 Gene3D G3DSA:3.40.605.10 15 470 3.5E-167 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_12965 102be69ba9c68987b8b628834c7b5012 488 Pfam PF00171 Aldehyde dehydrogenase family 15 475 2.8E-168 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_08820 0f3447994c2a28da02d835db288a3c5c 409 Gene3D G3DSA:3.30.70.270 220 399 7.9E-57 T 18-10-2018 RU84_08820 0f3447994c2a28da02d835db288a3c5c 409 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 232 398 5.6E-50 T 18-10-2018 IPR000160 GGDEF domain RU84_08820 0f3447994c2a28da02d835db288a3c5c 409 SMART SM00267 223 399 7.1E-69 T 18-10-2018 IPR000160 GGDEF domain RU84_08820 0f3447994c2a28da02d835db288a3c5c 409 SUPERFAMILY SSF55073 239 398 2.35E-49 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_08820 0f3447994c2a28da02d835db288a3c5c 409 Pfam PF00990 Diguanylate cyclase, GGDEF domain 235 395 5.1E-50 T 18-10-2018 IPR000160 GGDEF domain RU84_19140 01fbbcac2197d0a177efa87747e96b86 97 Pfam PF04956 TrbC/VIRB2 family 13 95 4.1E-10 T 18-10-2018 IPR007039 Conjugal transfer TrbC/type IV secretion VirB2 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 67 78 - T 18-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 SUPERFAMILY SSF50677 213 415 8.48E-52 T 18-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 11 936 21.06 T 18-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Gene3D G3DSA:1.10.730.20 652 936 9.8E-91 T 18-10-2018 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Gene3D G3DSA:3.90.740.10 204 420 1.1E-233 T 18-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 24 852 3.9E-279 T 18-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 SUPERFAMILY SSF47323 664 932 3.36E-75 T 18-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Pfam PF08264 Anticodon-binding domain of tRNA 697 852 1.0E-27 T 18-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Pfam PF06827 Zinc finger found in FPG and IleRS 905 932 7.7E-7 T 18-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 SUPERFAMILY SSF52374 11 660 5.89E-139 T 18-10-2018 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 246 269 4.3E-32 T 18-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 573 582 4.3E-32 T 18-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 60 71 4.3E-32 T 18-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 539 552 4.3E-32 T 18-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 413 428 4.3E-32 T 18-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Gene3D G3DSA:3.40.50.620 35 641 1.1E-233 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_18195 8dd19fe025b24e3e8b8c8bab2960bdea 945 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 36 651 1.0E-204 T 18-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 Gene3D G3DSA:2.30.42.10 113 201 9.8E-67 T 18-10-2018 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 65 377 4.1E-68 T 18-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 SUPERFAMILY SSF50156 116 189 1.39E-8 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 SUPERFAMILY SSF52096 53 377 1.82E-61 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 Gene3D G3DSA:3.30.750.44 64 347 9.8E-67 T 18-10-2018 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 Pfam PF03572 Peptidase family S41 210 369 8.4E-45 T 18-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 Gene3D G3DSA:3.90.226.10 202 368 9.8E-67 T 18-10-2018 RU84_17220 71024ccdc48dcad9f43fc806dd133cf6 394 SMART SM00245 184 372 3.1E-46 T 18-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 Gene3D G3DSA:2.40.30.170 264 382 1.2E-33 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 SUPERFAMILY SSF111369 144 202 1.09E-5 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 SUPERFAMILY SSF111369 63 123 1.7E-8 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 368 383 8.3E-7 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 262 283 8.3E-7 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 77 97 8.3E-7 T 18-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 Pfam PF13437 HlyD family secretion protein 250 367 2.0E-16 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 26 378 2.3E-120 T 18-10-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 Gene3D G3DSA:2.40.50.100 65 98 2.3E-13 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 Gene3D G3DSA:1.10.287.470 140 207 2.1E-10 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 SUPERFAMILY SSF111369 198 301 3.01E-13 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 Gene3D G3DSA:1.10.287.470 99 124 2.3E-13 T 18-10-2018 RU84_13670 08c7322433a0c60bf2967c38a5a2a858 383 Pfam PF13533 Biotin-lipoyl like 65 114 2.7E-14 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 SMART SM00470 39 131 1.1E-30 T 18-10-2018 IPR003115 ParB/Sulfiredoxin RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 Gene3D G3DSA:1.10.10.2830 118 231 1.4E-36 T 18-10-2018 RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 SUPERFAMILY SSF109709 124 232 2.88E-35 T 18-10-2018 RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 Pfam PF02195 ParB-like nuclease domain 40 131 3.1E-26 T 18-10-2018 IPR003115 ParB/Sulfiredoxin RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 Gene3D G3DSA:3.90.1530.30 52 117 1.3E-27 T 18-10-2018 RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 SUPERFAMILY SSF110849 39 133 3.4E-28 T 18-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RU84_09435 eaac0b78ff0ad3add087d69003a3d2c9 295 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 37 215 3.6E-57 T 18-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Gene3D G3DSA:3.40.50.300 437 612 7.9E-39 T 18-10-2018 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 SUPERFAMILY SSF52540 145 386 1.07E-35 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Gene3D G3DSA:2.30.30.930 59 120 4.4E-6 T 18-10-2018 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Gene3D G3DSA:2.30.30.140 5 57 4.0E-24 T 18-10-2018 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 5 943 26.826 T 18-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Pfam PF00271 Helicase conserved C-terminal domain 472 580 6.0E-12 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Gene3D G3DSA:3.30.360.80 691 762 2.3E-21 T 18-10-2018 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Pfam PF12137 RNA polymerase recycling family C-terminal 585 942 4.5E-121 T 18-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 SUPERFAMILY SSF52540 282 619 1.5E-39 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 SMART SM00487 156 355 5.1E-19 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Pfam PF00176 SNF2 family N-terminal domain 180 352 1.3E-11 T 18-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 Gene3D G3DSA:3.40.50.10810 156 427 2.1E-86 T 18-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily RU84_05045 7977def9b560a231b630e1bc6faf2ae6 945 SMART SM00490 496 580 1.5E-14 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 PIRSF PIRSF006276 1 147 5.6E-21 T 18-10-2018 IPR006015 Universal stress protein A RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 Pfam PF00582 Universal stress protein family 3 145 3.0E-31 T 18-10-2018 IPR006016 UspA RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 PRINTS PR01438 Universal stress protein signature 124 146 3.7E-17 T 18-10-2018 IPR006015 Universal stress protein A RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 PRINTS PR01438 Universal stress protein signature 106 118 3.7E-17 T 18-10-2018 IPR006015 Universal stress protein A RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 PRINTS PR01438 Universal stress protein signature 3 21 3.7E-17 T 18-10-2018 IPR006015 Universal stress protein A RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 Gene3D G3DSA:3.40.50.620 1 146 2.7E-41 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_07595 1a6acf2d6251f4bda3840e0d47ace92c 147 SUPERFAMILY SSF52402 1 145 7.79E-40 T 18-10-2018 RU84_00355 c0cbb02d152515587d7d91e88031ec61 462 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_00355 c0cbb02d152515587d7d91e88031ec61 462 Pfam PF00324 Amino acid permease 17 451 8.9E-108 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_00355 c0cbb02d152515587d7d91e88031ec61 462 PIRSF PIRSF006060 1 460 1.0E-78 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_00355 c0cbb02d152515587d7d91e88031ec61 462 Gene3D G3DSA:1.20.1740.10 10 461 1.7E-62 T 18-10-2018 RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF55326 215 420 2.86E-61 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 Gene3D G3DSA:3.30.1330.10 208 414 4.3E-42 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 Gene3D G3DSA:1.10.8.750 147 207 6.4E-28 T 18-10-2018 RU84_04595 0000178803490f6a09275722107983b4 1277 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 5 1275 0.0 T 18-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_04595 0000178803490f6a09275722107983b4 1277 Gene3D G3DSA:3.30.1330.10 608 799 4.6E-27 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1022 1276 3.2E-105 T 18-10-2018 RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF82697 1 145 2.25E-31 T 18-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_04595 0000178803490f6a09275722107983b4 1277 Gene3D G3DSA:3.90.650.10 800 964 6.8E-20 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 Gene3D G3DSA:3.90.650.10 415 599 2.5E-59 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 SMART SM01211 1022 1276 2.5E-155 T 18-10-2018 RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF56042 816 1015 7.78E-42 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 Pfam PF02769 AIR synthase related protein, C-terminal domain 424 582 1.2E-30 T 18-10-2018 IPR010918 PurM-like, C-terminal domain RU84_04595 0000178803490f6a09275722107983b4 1277 Pfam PF02769 AIR synthase related protein, C-terminal domain 862 955 7.9E-7 T 18-10-2018 IPR010918 PurM-like, C-terminal domain RU84_04595 0000178803490f6a09275722107983b4 1277 Gene3D G3DSA:3.40.50.880 965 1277 4.9E-134 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF56042 421 648 8.52E-51 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_04595 0000178803490f6a09275722107983b4 1277 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1277 20.293 T 18-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF52317 1019 1276 2.21E-95 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF109736 149 214 1.7E-21 T 18-10-2018 RU84_04595 0000178803490f6a09275722107983b4 1277 SUPERFAMILY SSF55326 611 809 9.42E-69 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_16370 b2640bfd2311e3ec85a767a5c023fdd8 298 Pfam PF03466 LysR substrate binding domain 88 290 2.5E-33 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_16370 b2640bfd2311e3ec85a767a5c023fdd8 298 Gene3D G3DSA:3.40.190.290 93 289 1.2E-58 T 18-10-2018 RU84_16370 b2640bfd2311e3ec85a767a5c023fdd8 298 Gene3D G3DSA:1.10.10.10 3 92 2.7E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16370 b2640bfd2311e3ec85a767a5c023fdd8 298 SUPERFAMILY SSF53850 89 292 1.09E-37 T 18-10-2018 RU84_16370 b2640bfd2311e3ec85a767a5c023fdd8 298 SUPERFAMILY SSF46785 4 87 5.05E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_16370 b2640bfd2311e3ec85a767a5c023fdd8 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 8.9E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10820 a31e45d45241f1dab85254cde37cad94 227 Gene3D G3DSA:1.10.10.10 14 80 2.2E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10820 a31e45d45241f1dab85254cde37cad94 227 SMART SM00895 89 210 5.7E-16 T 18-10-2018 IPR011711 GntR, C-terminal RU84_10820 a31e45d45241f1dab85254cde37cad94 227 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 79 2.7E-16 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10820 a31e45d45241f1dab85254cde37cad94 227 Gene3D G3DSA:1.20.120.530 83 223 3.7E-31 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_10820 a31e45d45241f1dab85254cde37cad94 227 SUPERFAMILY SSF46785 16 83 1.52E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10820 a31e45d45241f1dab85254cde37cad94 227 SUPERFAMILY SSF48008 85 218 5.49E-25 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_10820 a31e45d45241f1dab85254cde37cad94 227 Pfam PF07729 FCD domain 89 209 5.0E-26 T 18-10-2018 IPR011711 GntR, C-terminal RU84_10820 a31e45d45241f1dab85254cde37cad94 227 SMART SM00345 21 79 6.0E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10430 49bb2f71634f10294b152d78e6c4e273 267 SUPERFAMILY SSF54637 164 251 2.09E-5 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_10430 49bb2f71634f10294b152d78e6c4e273 267 Gene3D G3DSA:3.10.129.90 15 253 5.7E-9 T 18-10-2018 RU84_10430 49bb2f71634f10294b152d78e6c4e273 267 Pfam PF13622 Thioesterase-like superfamily 30 260 6.0E-24 T 18-10-2018 RU84_04700 1e717c54288efb9c10d8e1515f5a393a 356 Gene3D G3DSA:3.30.160.60 321 356 1.7E-14 T 18-10-2018 RU84_04700 1e717c54288efb9c10d8e1515f5a393a 356 Pfam PF02618 YceG-like family 62 345 7.2E-77 T 18-10-2018 IPR003770 Endolytic murein transglycosylase RU84_04700 1e717c54288efb9c10d8e1515f5a393a 356 Gene3D G3DSA:1.10.8.1150 57 130 3.0E-7 T 18-10-2018 RU84_04700 1e717c54288efb9c10d8e1515f5a393a 356 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 31 355 1.9E-83 T 18-10-2018 IPR003770 Endolytic murein transglycosylase RU84_04700 1e717c54288efb9c10d8e1515f5a393a 356 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 34 353 31.662 T 18-10-2018 IPR003770 Endolytic murein transglycosylase RU84_00715 040fd91a06623f18be2b250bd5f3dcf2 70 Pfam PF08410 Domain of unknown function (DUF1737) 1 50 3.7E-22 T 18-10-2018 IPR013619 Domain of unknown function DUF1737 RU84_03955 2528263b618075188afc9ad439d26ead 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 386 8.4E-160 T 18-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_03955 2528263b618075188afc9ad439d26ead 388 Gene3D G3DSA:3.30.470.20 1 235 1.4E-88 T 18-10-2018 RU84_03955 2528263b618075188afc9ad439d26ead 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 258 282 - T 18-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_03955 2528263b618075188afc9ad439d26ead 388 Gene3D G3DSA:3.30.1490.20 21 105 1.4E-88 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_03955 2528263b618075188afc9ad439d26ead 388 SUPERFAMILY SSF52210 240 386 7.72E-53 T 18-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_03955 2528263b618075188afc9ad439d26ead 388 Pfam PF08442 ATP-grasp domain 2 203 6.7E-78 T 18-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_03955 2528263b618075188afc9ad439d26ead 388 SUPERFAMILY SSF56059 1 239 2.75E-79 T 18-10-2018 RU84_03955 2528263b618075188afc9ad439d26ead 388 PIRSF PIRSF001554 1 388 9.3E-149 T 18-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_03955 2528263b618075188afc9ad439d26ead 388 Pfam PF00549 CoA-ligase 263 383 8.3E-25 T 18-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_03955 2528263b618075188afc9ad439d26ead 388 Gene3D G3DSA:3.40.50.261 241 388 8.3E-55 T 18-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_03955 2528263b618075188afc9ad439d26ead 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 42.916 T 18-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_15025 68645abfb84e3e3dddb6cef38facbb7f 273 Gene3D G3DSA:3.40.50.1000 7 262 8.3E-70 T 18-10-2018 IPR023214 HAD superfamily RU84_15025 68645abfb84e3e3dddb6cef38facbb7f 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 235 2.8E-17 T 18-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 RU84_15025 68645abfb84e3e3dddb6cef38facbb7f 273 Gene3D G3DSA:3.30.1240.10 83 192 8.3E-70 T 18-10-2018 RU84_15025 68645abfb84e3e3dddb6cef38facbb7f 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 262 1.4E-50 T 18-10-2018 RU84_15025 68645abfb84e3e3dddb6cef38facbb7f 273 SUPERFAMILY SSF56784 1 263 8.53E-58 T 18-10-2018 IPR036412 HAD-like superfamily RU84_15025 68645abfb84e3e3dddb6cef38facbb7f 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 262 1.3E-51 T 18-10-2018 IPR000150 Cof family GO:0016787 RU84_10995 9701f2d52f6d21d951e126be536fec51 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 61 84 1.5E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10995 9701f2d52f6d21d951e126be536fec51 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 53 1.5E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10995 9701f2d52f6d21d951e126be536fec51 213 SUPERFAMILY SSF46689 33 100 1.28E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_10995 9701f2d52f6d21d951e126be536fec51 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 40 84 2.3E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10995 9701f2d52f6d21d951e126be536fec51 213 Gene3D G3DSA:1.10.357.10 11 208 6.9E-21 T 18-10-2018 RU84_03635 2e83d8589023a7c8fc732606fc644600 272 Pfam PF02673 Bacitracin resistance protein BacA 9 260 6.1E-85 T 18-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RU84_03635 2e83d8589023a7c8fc732606fc644600 272 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 258 3.1E-78 T 18-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RU84_03635 2e83d8589023a7c8fc732606fc644600 272 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 265 18.297 T 18-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 RU84_13845 2afc369c83742da9d9f85c628b4b16aa 243 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 243 77.492 T 18-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 RU84_13845 2afc369c83742da9d9f85c628b4b16aa 243 SUPERFAMILY SSF55729 5 227 4.61E-81 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_13845 2afc369c83742da9d9f85c628b4b16aa 243 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 202 1.7E-61 T 18-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 RU84_13845 2afc369c83742da9d9f85c628b4b16aa 243 Gene3D G3DSA:3.40.630.70 60 238 3.5E-56 T 18-10-2018 RU84_13845 2afc369c83742da9d9f85c628b4b16aa 243 Gene3D G3DSA:2.30.210.20 1 59 4.8E-22 T 18-10-2018 RU84_13845 2afc369c83742da9d9f85c628b4b16aa 243 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 34 214 1.5E-52 T 18-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 RU84_00150 c5669e0de0affe7f4da48775c75190ff 296 SUPERFAMILY SSF53850 94 294 1.9E-32 T 18-10-2018 RU84_00150 c5669e0de0affe7f4da48775c75190ff 296 Gene3D G3DSA:3.40.190.290 94 295 4.4E-33 T 18-10-2018 RU84_00150 c5669e0de0affe7f4da48775c75190ff 296 Gene3D G3DSA:1.10.10.10 4 89 7.9E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00150 c5669e0de0affe7f4da48775c75190ff 296 Pfam PF03466 LysR substrate binding domain 91 294 3.3E-31 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_00150 c5669e0de0affe7f4da48775c75190ff 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.2E-14 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_00150 c5669e0de0affe7f4da48775c75190ff 296 SUPERFAMILY SSF46785 1 113 1.03E-21 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 5 84 5.8E-32 T 18-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 Pfam PF00462 Glutaredoxin 5 65 1.8E-22 T 18-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 SUPERFAMILY SSF52833 3 84 7.23E-30 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 Gene3D G3DSA:3.40.30.10 2 85 1.6E-30 T 18-10-2018 RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 PRINTS PR00160 Glutaredoxin signature 48 61 1.7E-14 T 18-10-2018 IPR014025 Glutaredoxin subgroup RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 PRINTS PR00160 Glutaredoxin signature 5 23 1.7E-14 T 18-10-2018 IPR014025 Glutaredoxin subgroup RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 PRINTS PR00160 Glutaredoxin signature 62 75 1.7E-14 T 18-10-2018 IPR014025 Glutaredoxin subgroup RU84_15815 a40bc56eb6c9604dd219cc8a91e2b1ca 85 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 18-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 RU84_10550 29794fce49a7355406f12627d94e8c47 569 SUPERFAMILY SSF161098 305 553 8.5E-40 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10550 29794fce49a7355406f12627d94e8c47 569 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 376 557 4.1E-16 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_10550 29794fce49a7355406f12627d94e8c47 569 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 280 9.2E-12 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_10550 29794fce49a7355406f12627d94e8c47 569 Gene3D G3DSA:1.10.3720.10 300 562 1.9E-37 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10550 29794fce49a7355406f12627d94e8c47 569 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 26 566 6.5E-204 T 18-10-2018 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative RU84_10550 29794fce49a7355406f12627d94e8c47 569 SUPERFAMILY SSF161098 23 282 1.4E-47 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10550 29794fce49a7355406f12627d94e8c47 569 Gene3D G3DSA:1.10.3720.10 18 284 2.4E-50 T 18-10-2018 IPR035906 MetI-like superfamily RU84_17130 47bcef29e53e2b91ef3cfdb6ba438b0e 625 Pfam PF13667 ThiC-associated domain 27 102 2.1E-33 T 18-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RU84_17130 47bcef29e53e2b91ef3cfdb6ba438b0e 625 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 142 590 6.7E-221 T 18-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RU84_17130 47bcef29e53e2b91ef3cfdb6ba438b0e 625 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 142 592 101.424 T 18-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RU84_17130 47bcef29e53e2b91ef3cfdb6ba438b0e 625 Gene3D G3DSA:3.20.20.540 211 523 5.0E-157 T 18-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RU84_17130 47bcef29e53e2b91ef3cfdb6ba438b0e 625 Pfam PF01964 Radical SAM ThiC family 143 587 3.2E-206 T 18-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 RU84_15140 c168c3d3bbbc3fbb8c823d63584cc2b1 112 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 100 5.1E-18 T 18-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RU84_15140 c168c3d3bbbc3fbb8c823d63584cc2b1 112 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 102 3.9E-23 T 18-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 RU84_15140 c168c3d3bbbc3fbb8c823d63584cc2b1 112 Gene3D G3DSA:3.30.160.100 1 109 4.2E-26 T 18-10-2018 IPR036567 Ribosome hibernation promotion factor-like RU84_15140 c168c3d3bbbc3fbb8c823d63584cc2b1 112 SUPERFAMILY SSF69754 1 102 1.57E-23 T 18-10-2018 IPR036567 Ribosome hibernation promotion factor-like RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 Pfam PF09397 Ftsk gamma domain 950 1010 1.4E-26 T 18-10-2018 IPR018541 FtsK gamma domain RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 Gene3D G3DSA:3.30.980.40 521 626 3.1E-32 T 18-10-2018 RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 SMART SM00843 948 1010 2.0E-32 T 18-10-2018 IPR018541 FtsK gamma domain RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 SUPERFAMILY SSF46785 949 1010 3.32E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 Gene3D G3DSA:3.40.50.300 627 930 6.7E-113 T 18-10-2018 RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 Pfam PF01580 FtsK/SpoIIIE family 630 844 1.4E-63 T 18-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 13 172 2.6E-29 T 18-10-2018 IPR025199 DNA translocase FtsK, 4TM region RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 SUPERFAMILY SSF52540 604 917 1.43E-46 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13835 23a4b121a21ed9aa07c9f541ad47a112 1010 Gene3D G3DSA:1.10.10.10 942 1009 2.3E-27 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17985 0930c74eb672f594fd8c9d4a0b9503eb 347 Gene3D G3DSA:3.40.50.2000 15 341 7.4E-53 T 18-10-2018 RU84_17985 0930c74eb672f594fd8c9d4a0b9503eb 347 Gene3D G3DSA:3.40.50.2000 159 331 7.4E-53 T 18-10-2018 RU84_17985 0930c74eb672f594fd8c9d4a0b9503eb 347 Pfam PF00534 Glycosyl transferases group 1 170 326 1.6E-35 T 18-10-2018 IPR001296 Glycosyl transferase, family 1 RU84_17985 0930c74eb672f594fd8c9d4a0b9503eb 347 SUPERFAMILY SSF53756 3 343 1.78E-58 T 18-10-2018 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 Pfam PF00773 RNB domain 262 587 1.3E-105 T 18-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 SUPERFAMILY SSF50249 73 148 1.63E-10 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 ProSitePatterns PS01175 Ribonuclease II family signature. 555 579 - T 18-10-2018 IPR022966 Ribonuclease II/R, conserved site RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 SUPERFAMILY SSF50249 139 240 4.71E-9 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 Pfam PF00575 S1 RNA binding domain 632 712 5.4E-11 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 Hamap MF_01895 Ribonuclease R [rnr]. 41 714 49.943 T 18-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 Pfam PF08206 Ribonuclease B OB domain 90 142 4.8E-7 T 18-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 Gene3D G3DSA:2.40.50.140 70 149 4.6E-8 T 18-10-2018 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 SUPERFAMILY SSF50249 632 713 2.4E-19 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 79 714 4.9E-190 T 18-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 SUPERFAMILY SSF50249 230 631 9.85E-140 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 SMART SM00955 262 588 8.9E-171 T 18-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 TIGRFAM TIGR02063 RNase_R: ribonuclease R 22 715 2.9E-230 T 18-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 SMART SM00316 631 714 5.2E-12 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_02195 6f6e6277f1e96d2200a1d2a2a99c4f16 805 Gene3D G3DSA:2.40.50.140 634 805 6.5E-17 T 18-10-2018 RU84_00990 49e9d261a8932d2a564467560e1011b9 182 Pfam PF07883 Cupin domain 110 172 3.9E-9 T 18-10-2018 IPR013096 Cupin 2, conserved barrel RU84_00990 49e9d261a8932d2a564467560e1011b9 182 SMART SM00530 11 66 6.1E-13 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_00990 49e9d261a8932d2a564467560e1011b9 182 Gene3D G3DSA:2.60.120.10 91 182 1.7E-15 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_00990 49e9d261a8932d2a564467560e1011b9 182 Gene3D G3DSA:1.10.260.40 2 77 1.3E-17 T 18-10-2018 RU84_00990 49e9d261a8932d2a564467560e1011b9 182 SUPERFAMILY SSF47413 5 72 3.1E-16 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_00990 49e9d261a8932d2a564467560e1011b9 182 Pfam PF01381 Helix-turn-helix 14 64 2.6E-15 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_00990 49e9d261a8932d2a564467560e1011b9 182 SUPERFAMILY SSF51182 59 178 1.64E-19 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_00700 52383338e38bee42e99f0a2d2afb5c26 274 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 18 263 6.8E-20 T 18-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RU84_00700 52383338e38bee42e99f0a2d2afb5c26 274 SUPERFAMILY SSF56219 14 271 1.31E-70 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_00700 52383338e38bee42e99f0a2d2afb5c26 274 Gene3D G3DSA:3.60.10.10 12 273 2.1E-78 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_00700 52383338e38bee42e99f0a2d2afb5c26 274 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 14 270 1.6E-67 T 18-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 RU84_00700 52383338e38bee42e99f0a2d2afb5c26 274 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 14 268 1.4E-64 T 18-10-2018 RU84_15720 4ab5282a6a73f4273a7a2c8bde0b9080 287 SUPERFAMILY SSF48613 33 273 1.53E-7 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_15720 4ab5282a6a73f4273a7a2c8bde0b9080 287 Gene3D G3DSA:1.20.910.10 29 279 4.1E-24 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_15720 4ab5282a6a73f4273a7a2c8bde0b9080 287 SMART SM01236 111 223 1.0E-11 T 18-10-2018 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 Gene3D G3DSA:1.10.150.170 110 209 1.5E-103 T 18-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 3 302 37.667 T 18-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 Pfam PF01795 MraW methylase family 2 301 1.3E-108 T 18-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 PIRSF PIRSF004486 1 303 2.1E-104 T 18-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 Gene3D G3DSA:3.40.50.150 6 301 1.5E-103 T 18-10-2018 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 SUPERFAMILY SSF81799 111 207 2.62E-35 T 18-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 301 2.0E-109 T 18-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 RU84_01390 f405b8d0e8e7943572a3533086201de0 307 SUPERFAMILY SSF53335 3 302 3.66E-43 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_17035 d5d2a42fa06db71eba5d11b45d41eb63 209 Gene3D G3DSA:2.60.200.20 1 106 4.4E-25 T 18-10-2018 RU84_17035 d5d2a42fa06db71eba5d11b45d41eb63 209 SUPERFAMILY SSF49879 2 100 1.47E-24 T 18-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 RU84_17035 d5d2a42fa06db71eba5d11b45d41eb63 209 SMART SM00240 22 72 2.8E-11 T 18-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RU84_17035 d5d2a42fa06db71eba5d11b45d41eb63 209 Pfam PF00498 FHA domain 24 86 1.8E-18 T 18-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 RU84_14905 c13d8c0fe1bee4d5231393209a107225 264 Gene3D G3DSA:3.40.190.10 109 222 7.3E-24 T 18-10-2018 RU84_14905 c13d8c0fe1bee4d5231393209a107225 264 SUPERFAMILY SSF53850 25 259 8.96E-35 T 18-10-2018 RU84_14905 c13d8c0fe1bee4d5231393209a107225 264 Pfam PF13531 Bacterial extracellular solute-binding protein 27 259 4.8E-27 T 18-10-2018 RU84_14905 c13d8c0fe1bee4d5231393209a107225 264 Gene3D G3DSA:3.40.190.10 34 258 7.3E-24 T 18-10-2018 RU84_05160 f1f203103645d5681d49b987bf52b34e 377 Gene3D G3DSA:3.40.50.620 1 214 4.0E-89 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_05160 f1f203103645d5681d49b987bf52b34e 377 SUPERFAMILY SSF52402 2 245 3.53E-55 T 18-10-2018 RU84_05160 f1f203103645d5681d49b987bf52b34e 377 Pfam PF03054 tRNA methyl transferase 3 366 3.1E-134 T 18-10-2018 RU84_05160 f1f203103645d5681d49b987bf52b34e 377 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 367 39.128 T 18-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RU84_05160 f1f203103645d5681d49b987bf52b34e 377 Gene3D G3DSA:2.30.30.280 215 282 2.5E-26 T 18-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RU84_05160 f1f203103645d5681d49b987bf52b34e 377 Gene3D G3DSA:2.40.30.10 284 374 3.4E-28 T 18-10-2018 RU84_05160 f1f203103645d5681d49b987bf52b34e 377 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 366 1.4E-133 T 18-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 RU84_10670 0b321178f566c60ff0b3abcd0f3fb980 312 Pfam PF00682 HMGL-like 12 278 1.8E-43 T 18-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RU84_10670 0b321178f566c60ff0b3abcd0f3fb980 312 Gene3D G3DSA:3.20.20.70 4 299 5.2E-107 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_10670 0b321178f566c60ff0b3abcd0f3fb980 312 SUPERFAMILY SSF51569 8 298 2.38E-65 T 18-10-2018 RU84_07935 2222b112178124c08339c3a74cab4b54 451 SUPERFAMILY SSF103473 17 441 2.75E-81 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_07935 2222b112178124c08339c3a74cab4b54 451 Pfam PF07690 Major Facilitator Superfamily 36 408 1.0E-46 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_07935 2222b112178124c08339c3a74cab4b54 451 Gene3D G3DSA:1.20.1250.20 303 442 2.4E-12 T 18-10-2018 RU84_07935 2222b112178124c08339c3a74cab4b54 451 Gene3D G3DSA:1.20.1250.20 25 302 1.6E-58 T 18-10-2018 RU84_07935 2222b112178124c08339c3a74cab4b54 451 ProSitePatterns PS00216 Sugar transport proteins signature 1. 85 101 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_07935 2222b112178124c08339c3a74cab4b54 451 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_07935 2222b112178124c08339c3a74cab4b54 451 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 14 415 1.8E-157 T 18-10-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0016021|GO:0022857|GO:0055085 RU84_14725 fe4f7164333e464f87e1660215df1e6d 498 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 11 478 1.1E-122 T 18-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RU84_14725 fe4f7164333e464f87e1660215df1e6d 498 Pfam PF00361 Proton-conducting membrane transporter 127 423 4.6E-73 T 18-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14725 fe4f7164333e464f87e1660215df1e6d 498 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 478 17.42 T 18-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.6E-13 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 SUPERFAMILY SSF46785 1 112 3.14E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 Gene3D G3DSA:3.40.190.10 90 292 4.2E-68 T 18-10-2018 RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 Gene3D G3DSA:3.40.190.10 163 271 4.2E-68 T 18-10-2018 RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 Gene3D G3DSA:1.10.10.10 1 89 1.0E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 SUPERFAMILY SSF53850 89 293 3.39E-34 T 18-10-2018 RU84_06785 a5ac99905dd3d97f5f279ea1a9cfac64 306 Pfam PF03466 LysR substrate binding domain 90 293 2.5E-34 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08595 251041288afdb786a222dbb2add860d0 247 Gene3D G3DSA:3.40.50.2300 7 141 3.5E-38 T 18-10-2018 RU84_08595 251041288afdb786a222dbb2add860d0 247 Pfam PF00072 Response regulator receiver domain 15 123 2.3E-29 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_08595 251041288afdb786a222dbb2add860d0 247 SUPERFAMILY SSF46894 138 238 1.56E-20 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_08595 251041288afdb786a222dbb2add860d0 247 SUPERFAMILY SSF52172 8 138 2.13E-41 T 18-10-2018 IPR011006 CheY-like superfamily RU84_08595 251041288afdb786a222dbb2add860d0 247 SMART SM00862 161 237 6.3E-16 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_08595 251041288afdb786a222dbb2add860d0 247 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 237 2.5E-17 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_08595 251041288afdb786a222dbb2add860d0 247 SMART SM00448 13 123 6.4E-40 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_08595 251041288afdb786a222dbb2add860d0 247 Gene3D G3DSA:1.10.10.10 142 245 5.8E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_18590 a9aac30f7de972fabac3ed242ccc843a 329 PIRSF PIRSF000355 2 329 9.0E-86 T 18-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18590 a9aac30f7de972fabac3ed242ccc843a 329 SUPERFAMILY SSF47240 8 327 6.63E-68 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_18590 a9aac30f7de972fabac3ed242ccc843a 329 Pfam PF00268 Ribonucleotide reductase, small chain 23 285 6.0E-51 T 18-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_18590 a9aac30f7de972fabac3ed242ccc843a 329 Gene3D G3DSA:1.10.620.20 3 322 5.6E-79 T 18-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RU84_15110 7469fde7065c338e02509bd6badf9182 451 Gene3D G3DSA:3.60.120.10 14 448 1.2E-123 T 18-10-2018 IPR005801 ADC synthase GO:0009058 RU84_15110 7469fde7065c338e02509bd6badf9182 451 Pfam PF00425 chorismate binding enzyme 184 438 9.0E-90 T 18-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal RU84_15110 7469fde7065c338e02509bd6badf9182 451 Pfam PF04715 Anthranilate synthase component I, N terminal region 40 121 8.7E-5 T 18-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_15110 7469fde7065c338e02509bd6badf9182 451 PRINTS PR00095 Anthranilate synthase component I signature 300 313 2.2E-8 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_15110 7469fde7065c338e02509bd6badf9182 451 PRINTS PR00095 Anthranilate synthase component I signature 380 394 2.2E-8 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_15110 7469fde7065c338e02509bd6badf9182 451 PRINTS PR00095 Anthranilate synthase component I signature 286 299 2.2E-8 T 18-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 RU84_15110 7469fde7065c338e02509bd6badf9182 451 SUPERFAMILY SSF56322 46 446 2.75E-109 T 18-10-2018 IPR005801 ADC synthase GO:0009058 RU84_07790 7911ba2045659f5100da884a989a641f 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 327 417 6.7E-24 T 18-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RU84_07790 7911ba2045659f5100da884a989a641f 513 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 423 512 5.5E-23 T 18-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RU84_07790 7911ba2045659f5100da884a989a641f 513 SUPERFAMILY SSF55021 418 512 2.2E-24 T 18-10-2018 RU84_07790 7911ba2045659f5100da884a989a641f 513 Gene3D G3DSA:3.40.50.1100 14 325 5.4E-130 T 18-10-2018 RU84_07790 7911ba2045659f5100da884a989a641f 513 Gene3D G3DSA:3.40.50.1100 50 146 5.4E-130 T 18-10-2018 RU84_07790 7911ba2045659f5100da884a989a641f 513 SUPERFAMILY SSF53686 8 363 1.31E-95 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_07790 7911ba2045659f5100da884a989a641f 513 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 18-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RU84_07790 7911ba2045659f5100da884a989a641f 513 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 314 1.0E-76 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_07790 7911ba2045659f5100da884a989a641f 513 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 512 8.3E-216 T 18-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RU84_07790 7911ba2045659f5100da884a989a641f 513 Gene3D G3DSA:3.40.1020.10 336 513 2.2E-64 T 18-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 RU84_05335 ba4ad9e4bcd7432bfc0963c6dce7353b 322 Gene3D G3DSA:3.40.50.12260 192 295 6.1E-77 T 18-10-2018 RU84_05335 ba4ad9e4bcd7432bfc0963c6dce7353b 322 SUPERFAMILY SSF53807 38 304 1.45E-60 T 18-10-2018 RU84_05335 ba4ad9e4bcd7432bfc0963c6dce7353b 322 Gene3D G3DSA:3.40.50.12250 43 302 6.1E-77 T 18-10-2018 RU84_05335 ba4ad9e4bcd7432bfc0963c6dce7353b 322 Pfam PF01497 Periplasmic binding protein 59 298 1.1E-31 T 18-10-2018 IPR002491 ABC transporter periplasmic binding domain RU84_11080 559e23d38290cdcfc273fd22f4799b93 488 SUPERFAMILY SSF56954 82 469 3.01E-63 T 18-10-2018 RU84_11080 559e23d38290cdcfc273fd22f4799b93 488 Pfam PF02321 Outer membrane efflux protein 84 263 1.1E-22 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_11080 559e23d38290cdcfc273fd22f4799b93 488 Pfam PF02321 Outer membrane efflux protein 293 468 1.4E-20 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_11080 559e23d38290cdcfc273fd22f4799b93 488 Gene3D G3DSA:1.20.1600.10 83 479 1.7E-60 T 18-10-2018 RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 888 926 6.1E-4 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 846 886 3.1E-9 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 909 933 0.0031 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 724 763 1.5E-6 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 766 805 1.9E-6 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 826 866 0.0024 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 867 899 4.9E-4 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 996 1033 2.1E-5 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 662 702 4.0E-6 T 18-10-2018 IPR006530 YD repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Pfam PF03527 RHS protein 1370 1403 2.8E-15 T 18-10-2018 IPR001826 RHS protein RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Gene3D G3DSA:3.90.930.1 662 797 3.2E-13 T 18-10-2018 RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Gene3D G3DSA:3.90.930.1 825 953 1.4E-10 T 18-10-2018 RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Gene3D G3DSA:2.180.10.10 1176 1480 1.2E-40 T 18-10-2018 RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1396 1480 6.9E-28 T 18-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Pfam PF05593 RHS Repeat 766 793 2.2E-6 T 18-10-2018 IPR031325 RHS repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Pfam PF05593 RHS Repeat 888 924 1.5E-5 T 18-10-2018 IPR031325 RHS repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Pfam PF05593 RHS Repeat 666 698 1.1E-4 T 18-10-2018 IPR031325 RHS repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Pfam PF05593 RHS Repeat 724 760 6.4E-6 T 18-10-2018 IPR031325 RHS repeat RU84_10940 22e47849718de9ceadcabecd0b896f54 1613 Pfam PF05593 RHS Repeat 847 879 3.8E-7 T 18-10-2018 IPR031325 RHS repeat RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 SUPERFAMILY SSF88723 3 171 5.3E-29 T 18-10-2018 IPR029060 PIN-like domain superfamily RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 Gene3D G3DSA:3.40.50.1010 7 165 2.7E-52 T 18-10-2018 RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 SMART SM00475 2 309 1.6E-35 T 18-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 5 170 3.4E-28 T 18-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 SUPERFAMILY SSF47807 178 334 1.5E-12 T 18-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 175 223 1.5E-11 T 18-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 SMART SM00279 175 210 6.4E-7 T 18-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 RU84_18535 ff43fc2828f5b9721ac1f84fe9c2db5d 345 Gene3D G3DSA:1.10.150.20 167 232 2.7E-52 T 18-10-2018 RU84_06705 f5319a19c524cc0a21718c3899a49158 201 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 13 197 31.559 T 18-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RU84_06705 f5319a19c524cc0a21718c3899a49158 201 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 15 197 8.0E-58 T 18-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RU84_06705 f5319a19c524cc0a21718c3899a49158 201 PIRSF PIRSF001296 12 201 3.2E-69 T 18-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RU84_06705 f5319a19c524cc0a21718c3899a49158 201 Pfam PF02669 K+-transporting ATPase, c chain 17 196 2.6E-66 T 18-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 Pfam PF01926 50S ribosome-binding GTPase 42 156 2.6E-25 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 40 202 7.8E-33 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 TIGRFAM TIGR00436 era: GTP-binding protein Era 40 322 1.1E-94 T 18-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 SUPERFAMILY SSF54814 214 340 4.36E-38 T 18-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 Hamap MF_00367 GTPase Era [era]. 37 339 36.049 T 18-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 Pfam PF07650 KH domain 263 327 5.9E-15 T 18-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 42 62 2.5E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 110 128 2.5E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 Gene3D G3DSA:3.40.50.300 36 214 4.5E-50 T 18-10-2018 RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 SUPERFAMILY SSF52540 42 236 9.88E-47 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04750 8a1eaec365a4d8a9c692e09f171e7e81 342 Gene3D G3DSA:3.30.300.20 217 341 4.7E-41 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Gene3D G3DSA:3.30.1490.100 253 365 3.9E-5 T 18-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 SUPERFAMILY SSF100879 254 354 6.8E-5 T 18-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Pfam PF00817 impB/mucB/samB family 11 158 3.0E-35 T 18-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Pfam PF11799 impB/mucB/samB family C-terminal domain 250 365 3.0E-14 T 18-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Gene3D G3DSA:3.30.70.270 10 164 8.4E-40 T 18-10-2018 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Gene3D G3DSA:2.30.40.20 16 79 8.4E-40 T 18-10-2018 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Gene3D G3DSA:1.10.150.20 188 241 1.2E-10 T 18-10-2018 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 SUPERFAMILY SSF56672 7 246 2.58E-63 T 18-10-2018 RU84_12260 b9bec2e3babf5d3469e3da92305f9c3b 432 Pfam PF13438 Domain of unknown function (DUF4113) 381 423 1.4E-6 T 18-10-2018 IPR025188 Domain of unknown function DUF4113 RU84_13655 dfdaef0304264519a404e3884754fd4f 385 Gene3D G3DSA:3.30.160.390 1 81 1.0E-20 T 18-10-2018 IPR038488 Integrase, DNA-binding domain superfamily RU84_13655 dfdaef0304264519a404e3884754fd4f 385 Gene3D G3DSA:1.10.443.10 189 366 5.7E-14 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_13655 dfdaef0304264519a404e3884754fd4f 385 Gene3D G3DSA:1.10.150.130 82 188 3.7E-20 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_13655 dfdaef0304264519a404e3884754fd4f 385 Pfam PF13356 Arm DNA-binding domain 2 73 2.6E-10 T 18-10-2018 IPR025166 Integrase, DNA-binding domain RU84_13655 dfdaef0304264519a404e3884754fd4f 385 SUPERFAMILY SSF56349 84 370 2.83E-48 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_13655 dfdaef0304264519a404e3884754fd4f 385 Pfam PF00589 Phage integrase family 201 330 6.5E-18 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_09430 0033adf9a9bb768b73f89cad9a79addf 211 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 186 1.7E-32 T 18-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RU84_11375 298a16311482850fabb99ec0d300e851 521 Gene3D G3DSA:3.40.30.80 1 199 8.1E-65 T 18-10-2018 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 7.5E-39 T 18-10-2018 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 7.5E-39 T 18-10-2018 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 7.5E-39 T 18-10-2018 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 7.5E-39 T 18-10-2018 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 7.5E-39 T 18-10-2018 RU84_11375 298a16311482850fabb99ec0d300e851 521 SUPERFAMILY SSF52833 1 100 2.12E-28 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_11375 298a16311482850fabb99ec0d300e851 521 Gene3D G3DSA:3.50.50.60 327 450 5.6E-109 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11375 298a16311482850fabb99ec0d300e851 521 PIRSF PIRSF000238 1 521 2.6E-257 T 18-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RU84_11375 298a16311482850fabb99ec0d300e851 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 18-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 SUPERFAMILY SSF52833 103 195 5.04E-21 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_11375 298a16311482850fabb99ec0d300e851 521 SUPERFAMILY SSF51905 202 514 7.13E-51 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11375 298a16311482850fabb99ec0d300e851 521 Gene3D G3DSA:3.50.50.60 212 509 5.6E-109 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11375 298a16311482850fabb99ec0d300e851 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 504 3.3E-46 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_11375 298a16311482850fabb99ec0d300e851 521 Pfam PF13192 Thioredoxin domain 119 194 1.5E-8 T 18-10-2018 IPR012336 Thioredoxin-like fold RU84_11375 298a16311482850fabb99ec0d300e851 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 4.0E-235 T 18-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 386 402 7.1E-16 T 18-10-2018 IPR015500 Peptidase S8, subtilisin-related RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 160 179 7.1E-16 T 18-10-2018 IPR015500 Peptidase S8, subtilisin-related RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 PRINTS PR00723 Subtilisin serine protease family (S8) signature 207 220 7.1E-16 T 18-10-2018 IPR015500 Peptidase S8, subtilisin-related RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 Gene3D G3DSA:3.40.50.200 137 435 4.4E-50 T 18-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 SUPERFAMILY SSF52743 142 432 1.1E-45 T 18-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 Pfam PF00082 Subtilase family 160 404 8.8E-18 T 18-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 165 176 - T 18-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RU84_01770 b0f0756568f3bb466611fdd441d3536c 451 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 387 397 - T 18-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RU84_06595 85cc82d221b63f4080832e1fcd11becf 609 Gene3D G3DSA:3.20.20.370 26 291 1.4E-61 T 18-10-2018 RU84_06595 85cc82d221b63f4080832e1fcd11becf 609 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 313 396 1.1E-12 T 18-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal RU84_06595 85cc82d221b63f4080832e1fcd11becf 609 Pfam PF01522 Polysaccharide deacetylase 92 254 2.0E-23 T 18-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RU84_06595 85cc82d221b63f4080832e1fcd11becf 609 Gene3D G3DSA:3.20.20.80 301 420 6.9E-22 T 18-10-2018 RU84_06595 85cc82d221b63f4080832e1fcd11becf 609 SUPERFAMILY SSF88713 56 257 3.61E-31 T 18-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RU84_06595 85cc82d221b63f4080832e1fcd11becf 609 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 38 397 3.6E-106 T 18-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 RU84_01220 7be2de08add787d4541f08241318a43b 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 18-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RU84_01220 7be2de08add787d4541f08241318a43b 197 Gene3D G3DSA:3.30.230.40 1 91 7.0E-38 T 18-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RU84_01220 7be2de08add787d4541f08241318a43b 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 18-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RU84_01220 7be2de08add787d4541f08241318a43b 197 Gene3D G3DSA:3.30.230.40 92 197 9.4E-39 T 18-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 RU84_01220 7be2de08add787d4541f08241318a43b 197 SUPERFAMILY SSF54211 4 88 1.77E-33 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_01220 7be2de08add787d4541f08241318a43b 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 41.394 T 18-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RU84_01220 7be2de08add787d4541f08241318a43b 197 SUPERFAMILY SSF54211 89 181 2.28E-35 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_01220 7be2de08add787d4541f08241318a43b 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 1.1E-63 T 18-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 RU84_08875 d0aaf8e7bf7997807e74f71ddf1858c7 255 SUPERFAMILY SSF53335 31 250 9.38E-44 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_08875 d0aaf8e7bf7997807e74f71ddf1858c7 255 Gene3D G3DSA:3.40.50.150 23 247 9.3E-56 T 18-10-2018 RU84_08875 d0aaf8e7bf7997807e74f71ddf1858c7 255 Pfam PF08241 Methyltransferase domain 47 143 5.6E-24 T 18-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RU84_09460 95bda4c3eb78cba200df6236632e11e5 817 Pfam PF04453 Organic solvent tolerance protein 348 724 8.1E-83 T 18-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 RU84_09460 95bda4c3eb78cba200df6236632e11e5 817 Pfam PF03968 OstA-like protein 105 237 4.0E-10 T 18-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal RU84_09460 95bda4c3eb78cba200df6236632e11e5 817 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 12 791 19.081 T 18-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 RU84_06250 3cf5e4ee95c6776dd2e9f751a2a8855c 339 SMART SM00972 270 336 1.6E-12 T 18-10-2018 IPR007893 Spore coat protein U RU84_06250 3cf5e4ee95c6776dd2e9f751a2a8855c 339 SUPERFAMILY SSF49401 19 151 3.67E-5 T 18-10-2018 IPR008966 Adhesion domain superfamily RU84_06250 3cf5e4ee95c6776dd2e9f751a2a8855c 339 Pfam PF05229 Spore Coat Protein U domain 200 335 9.3E-24 T 18-10-2018 IPR007893 Spore coat protein U RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 358 6.0E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 297 308 6.0E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 370 389 6.0E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 226 400 7.6E-6 T 18-10-2018 RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 244 1.5E-32 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 344 360 1.5E-32 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 423 443 1.5E-32 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 297 308 1.5E-32 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 390 407 1.5E-32 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 370 389 1.5E-32 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 Gene3D G3DSA:3.40.50.720 24 219 4.0E-57 T 18-10-2018 RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 232 456 1.3E-45 T 18-10-2018 RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 357 385 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 Gene3D G3DSA:3.40.50.720 221 462 4.4E-61 T 18-10-2018 RU84_07130 dc4465f20303a4dffb3ff2389b7522c5 463 SUPERFAMILY SSF51735 222 457 6.8E-56 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_09840 eeaf5973638e068365365031f4704600 235 Gene3D G3DSA:2.60.120.10 10 148 1.7E-25 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_09840 eeaf5973638e068365365031f4704600 235 SMART SM00419 173 223 2.5E-5 T 18-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RU84_09840 eeaf5973638e068365365031f4704600 235 Pfam PF13545 Crp-like helix-turn-helix domain 157 228 2.3E-14 T 18-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 RU84_09840 eeaf5973638e068365365031f4704600 235 Gene3D G3DSA:1.10.10.10 152 232 2.1E-15 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_09840 eeaf5973638e068365365031f4704600 235 SUPERFAMILY SSF51206 14 143 7.33E-31 T 18-10-2018 IPR018490 Cyclic nucleotide-binding-like RU84_09840 eeaf5973638e068365365031f4704600 235 Pfam PF00027 Cyclic nucleotide-binding domain 38 125 8.0E-17 T 18-10-2018 IPR000595 Cyclic nucleotide-binding domain RU84_09840 eeaf5973638e068365365031f4704600 235 SMART SM00100 19 140 2.3E-5 T 18-10-2018 IPR000595 Cyclic nucleotide-binding domain RU84_09840 eeaf5973638e068365365031f4704600 235 SUPERFAMILY SSF46785 155 231 1.82E-14 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_02140 cbe0612e51fdae8587e6c9d89631a1a9 125 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.346 T 18-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02140 cbe0612e51fdae8587e6c9d89631a1a9 125 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 1.5E-45 T 18-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02140 cbe0612e51fdae8587e6c9d89631a1a9 125 Pfam PF01196 Ribosomal protein L17 20 116 2.4E-33 T 18-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02140 cbe0612e51fdae8587e6c9d89631a1a9 125 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 18-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02140 cbe0612e51fdae8587e6c9d89631a1a9 125 Gene3D G3DSA:3.90.1030.10 1 117 3.8E-46 T 18-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02140 cbe0612e51fdae8587e6c9d89631a1a9 125 SUPERFAMILY SSF64263 1 119 2.49E-49 T 18-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02080 fe427d9095b3265668d6ce1bcc2f6be1 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 30.836 T 18-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02080 fe427d9095b3265668d6ce1bcc2f6be1 131 Gene3D G3DSA:3.30.1490.10 74 130 1.0E-21 T 18-10-2018 RU84_02080 fe427d9095b3265668d6ce1bcc2f6be1 131 Gene3D G3DSA:3.30.1370.30 2 73 1.7E-29 T 18-10-2018 RU84_02080 fe427d9095b3265668d6ce1bcc2f6be1 131 SUPERFAMILY SSF56047 2 130 6.54E-47 T 18-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02080 fe427d9095b3265668d6ce1bcc2f6be1 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 18-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02080 fe427d9095b3265668d6ce1bcc2f6be1 131 Pfam PF00410 Ribosomal protein S8 5 130 2.3E-49 T 18-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_04770 b112187d8a5e1558870f10c416a5124c 214 Gene3D G3DSA:1.20.1260.10 6 214 3.4E-73 T 18-10-2018 IPR012347 Ferritin-like RU84_04770 b112187d8a5e1558870f10c416a5124c 214 PIRSF PIRSF020736 1 214 1.0E-86 T 18-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 RU84_04770 b112187d8a5e1558870f10c416a5124c 214 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 62 210 7.3E-48 T 18-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 RU84_04770 b112187d8a5e1558870f10c416a5124c 214 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 9 59 2.5E-16 T 18-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 RU84_04770 b112187d8a5e1558870f10c416a5124c 214 SUPERFAMILY SSF47240 10 213 1.07E-71 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 Pfam PF01019 Gamma-glutamyltranspeptidase 106 653 9.6E-141 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 SUPERFAMILY SSF56235 84 657 1.45E-145 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 467 485 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 489 507 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 210 229 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 320 336 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 553 570 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 113 138 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 192 210 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 351 370 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 526 541 6.2E-61 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 Gene3D G3DSA:3.60.20.40 469 657 1.5E-46 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 Gene3D G3DSA:1.10.246.130 336 468 8.1E-39 T 18-10-2018 RU84_13660 34cf9b3d1b75d4f5a7120467305546be 661 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 92 650 8.6E-109 T 18-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 RU84_07720 3f471c77266e022196a1b8b208114487 223 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 217 3.6E-30 T 18-10-2018 IPR018635 Uncharacterised protein family UPF0319 RU84_13710 16c3b262cd6dc3cd98ff7c3b94016350 422 Pfam PF00149 Calcineurin-like phosphoesterase 8 238 4.5E-16 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_13710 16c3b262cd6dc3cd98ff7c3b94016350 422 Gene3D G3DSA:3.60.21.10 2 289 4.7E-75 T 18-10-2018 IPR029052 Metallo-dependent phosphatase-like RU84_13710 16c3b262cd6dc3cd98ff7c3b94016350 422 SUPERFAMILY SSF56300 9 355 1.37E-51 T 18-10-2018 RU84_13710 16c3b262cd6dc3cd98ff7c3b94016350 422 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 293 393 3.3E-9 T 18-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain RU84_13710 16c3b262cd6dc3cd98ff7c3b94016350 422 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 9 264 3.0E-55 T 18-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 RU84_10325 ee523d98151e619588b6edc80c9319bd 469 Pfam PF14518 Iron-containing redox enzyme 105 270 1.0E-28 T 18-10-2018 RU84_10325 ee523d98151e619588b6edc80c9319bd 469 SMART SM01236 136 234 3.8E-24 T 18-10-2018 RU84_10325 ee523d98151e619588b6edc80c9319bd 469 Gene3D G3DSA:1.20.910.10 95 277 6.3E-11 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 10 419 5.4E-183 T 18-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 422 48.829 T 18-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 Gene3D G3DSA:3.40.640.10 58 328 2.1E-166 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 Gene3D G3DSA:3.90.1150.10 8 411 2.1E-166 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 PIRSF PIRSF000521 23 422 1.6E-30 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 SUPERFAMILY SSF53383 5 421 1.64E-131 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 Pfam PF00202 Aminotransferase class-III 23 418 1.3E-129 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_14505 81203aac5bb7e8de4c02039310e1b238 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 240 277 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_17855 5534de64c71c2a94f68143f3dd88ca7b 124 SUPERFAMILY SSF89946 3 121 1.05E-34 T 18-10-2018 IPR036701 RraB-like superfamily RU84_17855 5534de64c71c2a94f68143f3dd88ca7b 124 Pfam PF06877 Regulator of ribonuclease activity B 11 110 4.4E-27 T 18-10-2018 IPR009671 Regulator of ribonuclease activity B domain RU84_17855 5534de64c71c2a94f68143f3dd88ca7b 124 Gene3D G3DSA:3.30.70.970 2 122 8.1E-11 T 18-10-2018 IPR036701 RraB-like superfamily RU84_03100 81ad3d81741f126f6f19dc3ff4431ff1 291 PIRSF PIRSF007580 2 278 1.4E-64 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_03100 81ad3d81741f126f6f19dc3ff4431ff1 291 SUPERFAMILY SSF47240 5 195 1.05E-7 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_03100 81ad3d81741f126f6f19dc3ff4431ff1 291 Pfam PF10118 Predicted metal-dependent hydrolase 15 260 8.6E-73 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.150.10.10 3121 3270 9.7E-13 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 340 434 6.8E-11 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 530 629 1.4E-9 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 245 339 4.0E-10 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 152 244 1.5E-9 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 435 529 2.3E-10 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3185 3271 4.8E-9 T 18-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 SUPERFAMILY SSF110296 187 589 1.12E-12 T 18-10-2018 RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 SUPERFAMILY SSF51120 3133 3245 2.22E-7 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Pfam PF12245 Bacterial Ig-like domain (group 3) 307 334 6.3E-7 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Pfam PF12245 Bacterial Ig-like domain (group 3) 211 239 1.3E-5 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Pfam PF12245 Bacterial Ig-like domain (group 3) 596 624 7.5E-5 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Pfam PF12245 Bacterial Ig-like domain (group 3) 497 524 6.3E-7 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Pfam PF12245 Bacterial Ig-like domain (group 3) 402 429 7.5E-6 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Pfam PF12245 Bacterial Ig-like domain (group 3) 2196 2208 4.9 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 630 737 1.1E-5 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 1092 1173 2.7E-6 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 2737 2813 9.7E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 2392 2469 5.8E-5 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 1267 1348 4.9E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 1960 2041 7.2E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_04150 754c7adfc9893ea924d8f1e6ef4b0c1e 3272 Gene3D G3DSA:2.60.40.10 1872 1952 1.9E-6 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_02115 ca856236dc39419630b3c2e5826989ea 38 Pfam PF00444 Ribosomal protein L36 1 38 2.5E-19 T 18-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02115 ca856236dc39419630b3c2e5826989ea 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 8.4E-21 T 18-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02115 ca856236dc39419630b3c2e5826989ea 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 18-10-2018 RU84_02115 ca856236dc39419630b3c2e5826989ea 38 SUPERFAMILY SSF57840 1 38 1.11E-16 T 18-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02115 ca856236dc39419630b3c2e5826989ea 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.47 T 18-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02115 ca856236dc39419630b3c2e5826989ea 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 18-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_09910 4703688e2fed0a69f322b89ea7752e52 476 Gene3D G3DSA:3.40.640.10 126 367 4.6E-141 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_09910 4703688e2fed0a69f322b89ea7752e52 476 Gene3D G3DSA:3.90.1150.10 94 471 4.6E-141 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_09910 4703688e2fed0a69f322b89ea7752e52 476 SUPERFAMILY SSF53383 71 472 3.4E-98 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_09910 4703688e2fed0a69f322b89ea7752e52 476 Pfam PF00155 Aminotransferase class I and II 107 468 7.5E-50 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_12420 72b30394a3406bb770b27827aed0100b 475 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 325 460 3.5E-26 T 18-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit RU84_12420 72b30394a3406bb770b27827aed0100b 475 Pfam PF17289 Terminase RNaseH-like domain 314 459 3.7E-17 T 18-10-2018 IPR035421 Terminase, large subunit gp17-like RU84_12780 115688baec0efa8f9665ae1335ae7409 393 Gene3D G3DSA:3.50.50.60 5 285 6.4E-79 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 6.3E-23 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 6.3E-23 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 6.3E-23 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.3E-23 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 6.3E-23 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 5.9E-15 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 5.9E-15 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 5.9E-15 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 5.9E-15 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 SUPERFAMILY SSF51905 2 310 2.59E-37 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12780 115688baec0efa8f9665ae1335ae7409 393 Gene3D G3DSA:3.50.50.60 111 249 6.4E-79 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_12780 115688baec0efa8f9665ae1335ae7409 393 Gene3D G3DSA:3.30.390.120 321 384 3.0E-13 T 18-10-2018 RU84_12780 115688baec0efa8f9665ae1335ae7409 393 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 287 4.1E-51 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 479 780 8.7E-64 T 18-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 PIRSF PIRSF000854 2 792 0.0 T 18-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 SUPERFAMILY SSF51621 460 790 2.25E-101 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Gene3D G3DSA:3.30.470.20 193 356 3.2E-58 T 18-10-2018 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Gene3D G3DSA:3.50.30.10 357 476 6.3E-42 T 18-10-2018 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 18-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 SUPERFAMILY SSF56059 4 383 2.56E-105 T 18-10-2018 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Gene3D G3DSA:3.20.20.60 477 789 7.6E-104 T 18-10-2018 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 18-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 SUPERFAMILY SSF52009 347 466 1.57E-34 T 18-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Gene3D G3DSA:3.30.1490.20 2 192 1.8E-71 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 6 786 0.0 T 18-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 7.5E-26 T 18-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 RU84_06580 01d121cbda2b1fe9c923853ef99276ed 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 343 7.9E-118 T 18-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 RU84_13465 9696b68fd17601c5b22036d898149a30 132 Gene3D G3DSA:1.20.1270.180 22 130 1.2E-21 T 18-10-2018 RU84_13465 9696b68fd17601c5b22036d898149a30 132 Pfam PF07007 Lysozyme inhibitor LprI 32 117 9.4E-20 T 18-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal RU84_08265 6a20fceeff81418d190459590090b9d9 457 Gene3D G3DSA:2.40.160.60 26 457 1.1E-18 T 18-10-2018 RU84_08265 6a20fceeff81418d190459590090b9d9 457 SUPERFAMILY SSF56935 20 457 1.92E-38 T 18-10-2018 RU84_08265 6a20fceeff81418d190459590090b9d9 457 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 39 456 8.5E-8 T 18-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) RU84_09410 8239b274259d858dfcc09f98136bf901 253 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 249 36.399 T 18-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 RU84_09410 8239b274259d858dfcc09f98136bf901 253 Gene3D G3DSA:3.90.550.10 1 253 2.4E-93 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_09410 8239b274259d858dfcc09f98136bf901 253 SUPERFAMILY SSF53448 3 246 2.94E-54 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_09410 8239b274259d858dfcc09f98136bf901 253 Pfam PF02348 Cytidylyltransferase 4 222 7.4E-49 T 18-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 RU84_09410 8239b274259d858dfcc09f98136bf901 253 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 242 1.2E-78 T 18-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 RU84_03625 4521174afc0c675725a28632e3b44b5d 330 Pfam PF00487 Fatty acid desaturase 57 305 2.6E-36 T 18-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RU84_11060 41df21b84da752dfbcaf03695082fed7 203 SUPERFAMILY SSF51161 43 201 2.24E-40 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_11060 41df21b84da752dfbcaf03695082fed7 203 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 157 185 - T 18-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RU84_11060 41df21b84da752dfbcaf03695082fed7 203 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 73 105 3.5E-5 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_11060 41df21b84da752dfbcaf03695082fed7 203 Gene3D G3DSA:2.160.10.10 38 202 6.7E-46 T 18-10-2018 RU84_11060 41df21b84da752dfbcaf03695082fed7 203 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 149 183 3.4E-7 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_09195 9942b14b2e838da0e7cfc50c317b5d52 313 SUPERFAMILY SSF54909 7 310 2.32E-98 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_09195 9942b14b2e838da0e7cfc50c317b5d52 313 Pfam PF04261 Dyp-type peroxidase family 10 306 6.1E-77 T 18-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RU84_09195 9942b14b2e838da0e7cfc50c317b5d52 313 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 16 306 1.3E-72 T 18-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 Gene3D G3DSA:3.40.605.10 3 254 6.9E-105 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 57.783 T 18-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 Pfam PF00171 Aldehyde dehydrogenase family 16 479 1.0E-177 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 Gene3D G3DSA:3.40.309.10 255 486 1.4E-78 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 1.2E-226 T 18-10-2018 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 RU84_13110 b3437eface772c0b622f8ed8534077c6 490 SUPERFAMILY SSF53720 4 484 3.53E-171 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_10740 04a1e712f63f3695c75365376b0fe207 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 3.5E-69 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_10740 04a1e712f63f3695c75365376b0fe207 257 SUPERFAMILY SSF52096 5 256 8.76E-80 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10740 04a1e712f63f3695c75365376b0fe207 257 Gene3D G3DSA:1.10.12.10 200 257 1.5E-21 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_10740 04a1e712f63f3695c75365376b0fe207 257 Gene3D G3DSA:3.90.226.10 4 199 4.4E-66 T 18-10-2018 RU84_10740 04a1e712f63f3695c75365376b0fe207 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_16470 04f8daa57af3e5b71c03e1dcf1dbf28a 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 121 18.144 T 18-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RU84_16470 04f8daa57af3e5b71c03e1dcf1dbf28a 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 116 2.2E-24 T 18-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RU84_16470 04f8daa57af3e5b71c03e1dcf1dbf28a 126 TIGRFAM TIGR00494 crcB: protein CrcB 6 117 2.4E-31 T 18-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 SUPERFAMILY SSF111369 134 185 4.97E-6 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 Gene3D G3DSA:2.40.30.170 238 352 1.8E-37 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 SUPERFAMILY SSF111369 181 298 5.1E-11 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 Pfam PF13533 Biotin-lipoyl like 60 101 5.1E-12 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 Gene3D G3DSA:1.10.287.470 124 192 1.2E-12 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 Gene3D G3DSA:1.10.287.470 91 120 6.1E-10 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 Pfam PF13437 HlyD family secretion protein 224 334 1.9E-16 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 SUPERFAMILY SSF111369 57 112 8.89E-8 T 18-10-2018 RU84_08485 f9b5746f40dffb6f604731f1f23ca2a2 353 Gene3D G3DSA:2.40.50.100 59 90 6.1E-10 T 18-10-2018 RU84_09290 f3caf10b5b1195b13396ad5ebc006f9f 137 Gene3D G3DSA:3.30.420.270 64 133 3.5E-8 T 18-10-2018 RU84_09290 f3caf10b5b1195b13396ad5ebc006f9f 137 Pfam PF02472 Biopolymer transport protein ExbD/TolR 15 135 3.5E-23 T 18-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 4.0E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.0E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.0E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 4.0E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 4.0E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 4.0E-34 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 SUPERFAMILY SSF51735 9 258 7.55E-69 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11325 2c1a80b57f367d76384053df70352d6e 261 Gene3D G3DSA:3.40.50.720 1 260 4.5E-68 T 18-10-2018 RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 4.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 4.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 4.3E-12 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11325 2c1a80b57f367d76384053df70352d6e 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_11325 2c1a80b57f367d76384053df70352d6e 261 Pfam PF00106 short chain dehydrogenase 10 192 2.4E-53 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01900 263448f2ddbb70683b4a42f2f4f07e50 258 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 4 257 6.8E-83 T 18-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria RU84_01900 263448f2ddbb70683b4a42f2f4f07e50 258 Pfam PF02405 Permease MlaE 41 252 3.7E-71 T 18-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 SUPERFAMILY SSF46785 4 84 1.27E-25 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 29 47 - T 18-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 3.1E-23 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 3.1E-23 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 3.1E-23 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 3.1E-23 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 Gene3D G3DSA:1.10.10.10 1 92 3.8E-28 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 Pfam PF01022 Bacterial regulatory protein, arsR family 12 58 1.8E-16 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_15520 3fcba4683bb316a70bd32cba89c1dd59 107 SMART SM00418 5 83 1.4E-26 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 Gene3D G3DSA:1.10.150.240 22 93 2.7E-45 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 SUPERFAMILY SSF56784 11 223 7.31E-44 T 18-10-2018 IPR036412 HAD-like superfamily RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 Gene3D G3DSA:1.10.1040.10 525 690 1.3E-26 T 18-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 509 647 1.3E-9 T 18-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 Gene3D G3DSA:3.40.50.1000 12 194 2.7E-45 T 18-10-2018 IPR023214 HAD superfamily RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 Gene3D G3DSA:3.40.50.720 247 463 6.2E-10 T 18-10-2018 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 186 4.4E-33 T 18-10-2018 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 SUPERFAMILY SSF48179 520 679 6.8E-15 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 1.7E-6 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 1.7E-6 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 1.7E-6 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_09020 a850ec11d8682ff0d8db610957229fb6 715 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 185 1.3E-13 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_09390 26356ec7a86265c94ac1a637dd1f9bb2 202 SUPERFAMILY SSF46689 3 74 1.23E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09390 26356ec7a86265c94ac1a637dd1f9bb2 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 2.3E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_09390 26356ec7a86265c94ac1a637dd1f9bb2 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.8E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_09390 26356ec7a86265c94ac1a637dd1f9bb2 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.8E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_09390 26356ec7a86265c94ac1a637dd1f9bb2 202 Gene3D G3DSA:1.10.357.10 1 193 1.7E-17 T 18-10-2018 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 40 349 9.5E-115 T 18-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 Gene3D G3DSA:3.40.50.10800 124 346 2.0E-97 T 18-10-2018 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 Pfam PF02445 Quinolinate synthetase A protein 41 347 7.9E-105 T 18-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 Gene3D G3DSA:3.40.50.10800 41 329 2.0E-97 T 18-10-2018 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 Gene3D G3DSA:3.40.50.10800 209 304 2.0E-97 T 18-10-2018 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 354 67.98 T 18-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RU84_14985 cb29438b67d0ebbd67d75ad74ba6c34b 354 SUPERFAMILY SSF142754 39 348 3.4E-109 T 18-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 RU84_05300 b12b756f4408bbca89c8f9ff30c2d343 207 Pfam PF08348 YheO-like PAS domain 9 119 1.2E-34 T 18-10-2018 IPR013559 YheO-like RU84_05300 b12b756f4408bbca89c8f9ff30c2d343 207 Pfam PF13309 HTH domain 144 204 3.6E-18 T 18-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain RU84_05300 b12b756f4408bbca89c8f9ff30c2d343 207 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 5 130 3.0E-70 T 18-10-2018 IPR013559 YheO-like RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 SMART SM00729 414 664 4.6E-9 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 30 682 6.0E-257 T 18-10-2018 IPR022946 Uncharacterised protein family UPF0313 RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 Pfam PF11842 Domain of unknown function (DUF3362) 632 772 6.9E-63 T 18-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 Pfam PF08497 Radical SAM N-terminal 30 417 3.8E-141 T 18-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 Pfam PF04055 Radical SAM superfamily 418 621 1.4E-17 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 30 684 49.018 T 18-10-2018 IPR022946 Uncharacterised protein family UPF0313 RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 SUPERFAMILY SSF102114 416 668 9.94E-11 T 18-10-2018 RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 Gene3D G3DSA:3.80.30.20 414 679 7.8E-14 T 18-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RU84_17400 2e9c6d9cb2cc1e595041435825c39852 792 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 418 438 - T 18-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 Gene3D G3DSA:1.10.8.280 147 259 3.1E-153 T 18-10-2018 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 Pfam PF00005 ABC transporter 468 671 6.2E-11 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 SUPERFAMILY SSF52540 6 416 6.13E-33 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 Gene3D G3DSA:3.40.50.300 463 747 3.4E-101 T 18-10-2018 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 Gene3D G3DSA:1.20.1580.10 545 583 3.4E-101 T 18-10-2018 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 Gene3D G3DSA:1.20.1580.10 93 337 3.1E-153 T 18-10-2018 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 Gene3D G3DSA:3.40.50.300 8 437 3.1E-153 T 18-10-2018 RU84_08610 bbd2d2e55577c742d22508b511c918cb 753 SUPERFAMILY SSF52540 458 717 2.2E-36 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00110 c9c9579c629d492805f7473db04338d6 230 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 6 230 8.1E-66 T 18-10-2018 IPR026387 Outer membrane protein RU84_05090 a4fb5d348a2475b7eca1b94e5b7ce015 510 SUPERFAMILY SSF53383 19 496 9.11E-117 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_05090 a4fb5d348a2475b7eca1b94e5b7ce015 510 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 81 428 1.2E-61 T 18-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RU84_05090 a4fb5d348a2475b7eca1b94e5b7ce015 510 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 312 333 - T 18-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 RU84_05090 a4fb5d348a2475b7eca1b94e5b7ce015 510 Gene3D G3DSA:3.90.1150.170 45 488 2.7E-128 T 18-10-2018 RU84_05090 a4fb5d348a2475b7eca1b94e5b7ce015 510 Gene3D G3DSA:3.40.640.10 113 372 2.7E-128 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_05125 4fc85a8497a2c355125a31180582a6ed 465 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 261 462 6.0E-21 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_05125 4fc85a8497a2c355125a31180582a6ed 465 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 222 462 4.1E-64 T 18-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 RU84_05125 4fc85a8497a2c355125a31180582a6ed 465 SUPERFAMILY SSF161098 240 451 1.57E-35 T 18-10-2018 IPR035906 MetI-like superfamily RU84_05125 4fc85a8497a2c355125a31180582a6ed 465 Pfam PF11812 Domain of unknown function (DUF3333) 32 196 2.2E-43 T 18-10-2018 IPR024573 Domain of unknown function DUF3333 RU84_05125 4fc85a8497a2c355125a31180582a6ed 465 Gene3D G3DSA:1.10.3720.10 237 463 4.8E-34 T 18-10-2018 IPR035906 MetI-like superfamily RU84_13560 3b3db130f58a48f571c33f4448ead23d 77 Gene3D G3DSA:1.10.260.40 4 59 2.1E-7 T 18-10-2018 RU84_13560 3b3db130f58a48f571c33f4448ead23d 77 SUPERFAMILY SSF47413 3 43 7.82E-8 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_13560 3b3db130f58a48f571c33f4448ead23d 77 Pfam PF01381 Helix-turn-helix 15 42 9.9E-7 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_01110 cf041a55129a0e80aed4ea37a6d69062 111 SUPERFAMILY SSF46785 13 109 1.08E-28 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_01110 cf041a55129a0e80aed4ea37a6d69062 111 Gene3D G3DSA:1.10.10.10 5 111 2.9E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01110 cf041a55129a0e80aed4ea37a6d69062 111 Pfam PF01638 HxlR-like helix-turn-helix 22 110 5.5E-28 T 18-10-2018 IPR002577 Helix-turn-helix, HxlR type RU84_15195 10d9a6c0c2989a73d6b2a3fbbacacb43 125 Gene3D G3DSA:1.20.1280.230 19 125 9.6E-61 T 18-10-2018 RU84_15195 10d9a6c0c2989a73d6b2a3fbbacacb43 125 Pfam PF16309 Domian of unknown function (DUF4951) 43 125 6.4E-48 T 18-10-2018 IPR032538 Protein of unknown function DUF4951 RU84_07220 5080ed05a6a36cffffc2a55b3eaad80d 557 PIRSF PIRSF006429 32 557 1.9E-162 T 18-10-2018 IPR024188 Glutamate synthase large subunit-like protein RU84_07220 5080ed05a6a36cffffc2a55b3eaad80d 557 SUPERFAMILY SSF51395 37 526 1.2E-133 T 18-10-2018 RU84_07220 5080ed05a6a36cffffc2a55b3eaad80d 557 Pfam PF01645 Conserved region in glutamate synthase 181 497 2.8E-88 T 18-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 RU84_07220 5080ed05a6a36cffffc2a55b3eaad80d 557 PIRSF PIRSF500060 34 557 2.1E-230 T 18-10-2018 IPR027283 Glutamate synthase large subunit-like protein, bacteria RU84_07220 5080ed05a6a36cffffc2a55b3eaad80d 557 Gene3D G3DSA:3.20.20.70 119 530 1.4E-109 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_16335 b4fcf5a9c935d8f2c201359d486d0c81 231 SUPERFAMILY SSF46785 2 61 9.29E-10 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_16335 b4fcf5a9c935d8f2c201359d486d0c81 231 Pfam PF13280 WYL domain 136 226 2.5E-13 T 18-10-2018 IPR026881 WYL domain RU84_16335 b4fcf5a9c935d8f2c201359d486d0c81 231 Pfam PF08279 HTH domain 6 60 7.2E-17 T 18-10-2018 IPR013196 Helix-turn-helix, type 11 RU84_16335 b4fcf5a9c935d8f2c201359d486d0c81 231 Gene3D G3DSA:1.10.10.10 1 63 3.1E-16 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03135 5710cae693b8871b6a485aa86dfceef9 258 SMART SM00849 19 248 7.0E-15 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_03135 5710cae693b8871b6a485aa86dfceef9 258 Pfam PF00753 Metallo-beta-lactamase superfamily 20 227 2.6E-19 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_03135 5710cae693b8871b6a485aa86dfceef9 258 SUPERFAMILY SSF56281 16 250 6.03E-30 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_03135 5710cae693b8871b6a485aa86dfceef9 258 Gene3D G3DSA:3.60.15.10 7 258 7.9E-49 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_12610 eecae699f2a5646ac2f3f87301ddc41a 159 PIRSF PIRSF004505 1 158 8.2E-50 T 18-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RU84_12610 eecae699f2a5646ac2f3f87301ddc41a 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 158 28.204 T 18-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RU84_12610 eecae699f2a5646ac2f3f87301ddc41a 159 Gene3D G3DSA:3.40.1280.10 1 158 7.8E-52 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_12610 eecae699f2a5646ac2f3f87301ddc41a 159 SUPERFAMILY SSF75217 1 156 2.72E-50 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_12610 eecae699f2a5646ac2f3f87301ddc41a 159 Pfam PF02590 Predicted SPOUT methyltransferase 1 157 2.3E-50 T 18-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RU84_12610 eecae699f2a5646ac2f3f87301ddc41a 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 158 3.2E-52 T 18-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 RU84_16425 640768ee351bd4efcbb7dc4930d88dd2 384 Pfam PF02486 Replication initiation factor 154 320 1.1E-25 T 18-10-2018 IPR003491 Replication initiation factor GO:0003677|GO:0003916|GO:0006270 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PIRSF PIRSF000350 1 457 2.2E-57 T 18-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 131 140 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 299 306 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 1.8E-32 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 Gene3D G3DSA:3.50.50.60 140 261 6.6E-75 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02580 bd076a1218452fc866044926a7fff0b6 457 Gene3D G3DSA:3.30.390.30 339 457 9.9E-38 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.6E-10 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 1.6E-10 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 128 146 1.6E-10 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.6E-10 T 18-10-2018 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 Gene3D G3DSA:3.50.50.60 2 325 6.6E-75 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02580 bd076a1218452fc866044926a7fff0b6 457 SUPERFAMILY SSF55424 343 454 3.95E-24 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 318 9.7E-37 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_02580 bd076a1218452fc866044926a7fff0b6 457 SUPERFAMILY SSF51905 1 368 2.51E-32 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_02580 bd076a1218452fc866044926a7fff0b6 457 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 343 448 4.2E-18 T 18-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RU84_16215 488c1308db01eb18619ba8a71935fd2a 373 Gene3D G3DSA:3.60.10.10 105 322 4.7E-20 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_16215 488c1308db01eb18619ba8a71935fd2a 373 SUPERFAMILY SSF56219 102 319 4.97E-32 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_16215 488c1308db01eb18619ba8a71935fd2a 373 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 119 312 1.5E-14 T 18-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase RU84_11835 13640cda8acdf58ec400b7d1031047d8 431 ProSitePatterns PS00218 Amino acid permeases signature. 20 50 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_11835 13640cda8acdf58ec400b7d1031047d8 431 Gene3D G3DSA:1.20.1740.10 1 430 1.6E-58 T 18-10-2018 RU84_11835 13640cda8acdf58ec400b7d1031047d8 431 PIRSF PIRSF006060 1 431 1.2E-73 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_11835 13640cda8acdf58ec400b7d1031047d8 431 Pfam PF00324 Amino acid permease 1 399 6.1E-109 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_08740 af9b4149b28cb3c327090cf21b37ea2b 305 Pfam PF00892 EamA-like transporter family 3 134 6.2E-13 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_08740 af9b4149b28cb3c327090cf21b37ea2b 305 Pfam PF00892 EamA-like transporter family 150 285 2.0E-15 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_08740 af9b4149b28cb3c327090cf21b37ea2b 305 SUPERFAMILY SSF103481 187 285 2.09E-9 T 18-10-2018 RU84_08740 af9b4149b28cb3c327090cf21b37ea2b 305 SUPERFAMILY SSF103481 35 137 3.79E-15 T 18-10-2018 RU84_04250 621180a731824d8980b29755cab45e68 168 Pfam PF13527 Acetyltransferase (GNAT) domain 5 129 4.6E-12 T 18-10-2018 RU84_04250 621180a731824d8980b29755cab45e68 168 Gene3D G3DSA:3.40.630.30 1 166 2.8E-47 T 18-10-2018 RU84_04250 621180a731824d8980b29755cab45e68 168 SUPERFAMILY SSF55729 3 148 1.1E-29 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_04255 8a34c7ce86b825809ce4eb00612fa768 85 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 85 4.0E-39 T 18-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair RU84_04255 8a34c7ce86b825809ce4eb00612fa768 85 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 85 27.928 T 18-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair RU84_00055 21976ca6c407689c4cfb22c30d37a956 111 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 92 109 - T 18-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 RU84_00055 21976ca6c407689c4cfb22c30d37a956 111 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 106 1.8E-18 T 18-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RU84_00055 21976ca6c407689c4cfb22c30d37a956 111 Gene3D G3DSA:2.60.300.12 6 111 9.7E-33 T 18-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RU84_00055 21976ca6c407689c4cfb22c30d37a956 111 SUPERFAMILY SSF89360 3 97 2.75E-30 T 18-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RU84_00055 21976ca6c407689c4cfb22c30d37a956 111 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 111 33.22 T 18-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 RU84_00055 21976ca6c407689c4cfb22c30d37a956 111 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 7 110 1.8E-37 T 18-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Gene3D G3DSA:2.40.160.50 431 843 2.6E-108 T 18-10-2018 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Gene3D G3DSA:3.10.20.310 271 347 2.7E-14 T 18-10-2018 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Gene3D G3DSA:3.10.20.310 96 177 7.2E-17 T 18-10-2018 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Pfam PF07244 Surface antigen variable number repeat 351 425 2.7E-15 T 18-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Pfam PF07244 Surface antigen variable number repeat 97 176 1.0E-11 T 18-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Pfam PF07244 Surface antigen variable number repeat 271 348 1.5E-11 T 18-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Pfam PF07244 Surface antigen variable number repeat 180 267 9.1E-13 T 18-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Gene3D G3DSA:3.10.20.310 22 95 3.6E-17 T 18-10-2018 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 3 843 23.714 T 18-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Pfam PF01103 Surface antigen 452 843 3.0E-74 T 18-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 28 843 1.8E-236 T 18-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Gene3D G3DSA:3.10.20.310 348 425 9.9E-24 T 18-10-2018 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 Gene3D G3DSA:3.10.20.310 179 270 2.1E-19 T 18-10-2018 RU84_07480 6898c1b80c38a0240f652300d8cc339b 843 PIRSF PIRSF006076 1 843 5.4E-244 T 18-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 RU84_08435 2222c970267bc0fcce8e68b94ac5cc26 339 SUPERFAMILY SSF53807 38 313 9.03E-47 T 18-10-2018 RU84_08435 2222c970267bc0fcce8e68b94ac5cc26 339 Pfam PF01497 Periplasmic binding protein 53 285 3.5E-29 T 18-10-2018 IPR002491 ABC transporter periplasmic binding domain RU84_08435 2222c970267bc0fcce8e68b94ac5cc26 339 Gene3D G3DSA:3.40.50.1980 20 339 2.5E-59 T 18-10-2018 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 SUPERFAMILY SSF56519 68 262 3.01E-38 T 18-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Gene3D G3DSA:3.90.1310.10 58 149 2.1E-10 T 18-10-2018 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Gene3D G3DSA:3.90.1310.10 150 263 2.5E-31 T 18-10-2018 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 SUPERFAMILY SSF56601 214 602 5.96E-92 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Pfam PF00905 Penicillin binding protein transpeptidase domain 289 587 2.8E-73 T 18-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Gene3D G3DSA:3.30.450.330 264 591 1.9E-124 T 18-10-2018 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Gene3D G3DSA:3.40.710.10 325 507 1.9E-124 T 18-10-2018 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Pfam PF03717 Penicillin-binding Protein dimerisation domain 72 247 3.9E-17 T 18-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 RU84_01400 4e873c2070d0323df05a8ed9a925686e 610 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 24 602 41.173 T 18-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_08030 82303e952bfea3f588a246d21e3c3bd2 449 Gene3D G3DSA:1.20.1250.20 11 221 9.0E-43 T 18-10-2018 RU84_08030 82303e952bfea3f588a246d21e3c3bd2 449 SUPERFAMILY SSF103473 11 432 3.4E-63 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_08030 82303e952bfea3f588a246d21e3c3bd2 449 Pfam PF07690 Major Facilitator Superfamily 27 391 1.2E-42 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_08030 82303e952bfea3f588a246d21e3c3bd2 449 Gene3D G3DSA:1.20.1250.20 242 437 9.3E-21 T 18-10-2018 RU84_17650 c762563a9a174e6b44334032900147da 175 Pfam PF03551 Transcriptional regulator PadR-like family 38 105 1.5E-16 T 18-10-2018 IPR005149 Transcription regulator PadR, N-terminal RU84_17650 c762563a9a174e6b44334032900147da 175 SUPERFAMILY SSF46785 22 120 2.41E-23 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17650 c762563a9a174e6b44334032900147da 175 Gene3D G3DSA:1.10.10.10 21 130 1.9E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14235 20774b4bdae2673ea8f7509d3f431c84 61 SUPERFAMILY SSF47413 13 54 2.56E-8 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_14235 20774b4bdae2673ea8f7509d3f431c84 61 Gene3D G3DSA:1.10.260.40 1 60 4.7E-10 T 18-10-2018 RU84_14235 20774b4bdae2673ea8f7509d3f431c84 61 Pfam PF14549 DNA-binding transcriptional regulator Cro 13 51 1.8E-9 T 18-10-2018 RU84_15190 f57e1b520cecf2c21b10ee981f4748de 274 Gene3D G3DSA:3.60.110.10 1 274 3.1E-82 T 18-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RU84_15190 f57e1b520cecf2c21b10ee981f4748de 274 SUPERFAMILY SSF56317 3 269 4.32E-68 T 18-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RU84_15190 f57e1b520cecf2c21b10ee981f4748de 274 Pfam PF00795 Carbon-nitrogen hydrolase 3 255 3.4E-48 T 18-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RU84_15190 f57e1b520cecf2c21b10ee981f4748de 274 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 18-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site RU84_08015 ea66da1aef2f3c227c5aa7079d95efba 232 SUPERFAMILY SSF53254 1 222 2.36E-32 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_08015 ea66da1aef2f3c227c5aa7079d95efba 232 SMART SM00855 3 176 3.2E-10 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_08015 ea66da1aef2f3c227c5aa7079d95efba 232 Gene3D G3DSA:3.40.50.1240 1 227 1.1E-30 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_08015 ea66da1aef2f3c227c5aa7079d95efba 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 217 5.0E-18 T 18-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 RU84_08015 ea66da1aef2f3c227c5aa7079d95efba 232 PIRSF PIRSF000709 1 75 7.1E-4 T 18-10-2018 RU84_08080 5fff1ba7a4440be79305e68205f0e23a 317 SUPERFAMILY SSF50475 6 167 2.45E-50 T 18-10-2018 RU84_08080 5fff1ba7a4440be79305e68205f0e23a 317 Gene3D G3DSA:2.30.110.10 10 182 2.4E-53 T 18-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RU84_08080 5fff1ba7a4440be79305e68205f0e23a 317 SUPERFAMILY SSF46785 176 314 5.15E-10 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08080 5fff1ba7a4440be79305e68205f0e23a 317 Gene3D G3DSA:1.10.10.10 183 316 3.5E-9 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08080 5fff1ba7a4440be79305e68205f0e23a 317 SMART SM00903 21 164 4.7E-60 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_08080 5fff1ba7a4440be79305e68205f0e23a 317 Pfam PF01613 Flavin reductase like domain 22 162 1.3E-35 T 18-10-2018 IPR002563 Flavin reductase like domain GO:0010181 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 SUPERFAMILY SSF47005 111 151 3.4E-10 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 Pfam PF02817 e3 binding domain 116 146 3.7E-11 T 18-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 Gene3D G3DSA:3.30.559.10 166 398 9.9E-95 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 397 1.7E-177 T 18-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 18-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 Gene3D G3DSA:4.10.320.10 103 152 7.4E-14 T 18-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 SUPERFAMILY SSF52777 170 397 5.78E-88 T 18-10-2018 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 Gene3D G3DSA:2.40.50.100 1 102 7.9E-20 T 18-10-2018 RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 Pfam PF00364 Biotin-requiring enzyme 4 75 1.7E-18 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 SUPERFAMILY SSF51230 1 95 1.83E-24 T 18-10-2018 IPR011053 Single hybrid motif RU84_03945 f2a8e40cf05941ec5c328a4dbc07f096 398 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 168 395 6.2E-81 T 18-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 RU84_17275 18fd3d38a6f299a93d365f5a6253e49b 152 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 152 80.808 T 18-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RU84_17275 18fd3d38a6f299a93d365f5a6253e49b 152 Pfam PF03477 ATP cone domain 50 136 5.8E-18 T 18-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RU84_17275 18fd3d38a6f299a93d365f5a6253e49b 152 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 6.4E-60 T 18-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 RU84_12305 008788046d059e84cab39bc987dc6108 1436 SUPERFAMILY SSF51261 714 761 1.57E-8 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_12305 008788046d059e84cab39bc987dc6108 1436 TIGRFAM TIGR02675 tape_meas_nterm: tape measure domain 138 211 1.0E-25 T 18-10-2018 IPR013491 Caudovirus, tape measure, N-terminal RU84_12305 008788046d059e84cab39bc987dc6108 1436 Gene3D G3DSA:2.70.70.10 721 796 3.4E-8 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_12305 008788046d059e84cab39bc987dc6108 1436 Pfam PF06120 Tail length tape measure protein 375 477 7.9E-10 T 18-10-2018 IPR009302 Tail length tape measure RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Gene3D G3DSA:3.30.980.10 560 701 5.9E-49 T 18-10-2018 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Gene3D G3DSA:3.30.54.20 622 681 5.9E-49 T 18-10-2018 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 8.3E-32 T 18-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 8.3E-32 T 18-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 8.3E-32 T 18-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 8.3E-32 T 18-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 8.3E-32 T 18-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 SMART SM00863 651 700 1.2E-19 T 18-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 878 194.217 T 18-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 SUPERFAMILY SSF50447 452 550 3.18E-18 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Pfam PF02272 DHHA1 domain 743 874 6.8E-23 T 18-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 SUPERFAMILY SSF55681 2 253 9.44E-106 T 18-10-2018 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 700 5.3E-17 T 18-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Gene3D G3DSA:3.30.930.10 1 250 5.7E-120 T 18-10-2018 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 SUPERFAMILY SSF55186 552 715 2.49E-47 T 18-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Gene3D G3DSA:3.10.310.40 768 876 3.8E-25 T 18-10-2018 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Pfam PF01411 tRNA synthetases class II (A) 5 551 5.3E-221 T 18-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 SUPERFAMILY SSF101353 254 459 6.02E-59 T 18-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 857 0.0 T 18-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 RU84_11510 48f5e54d4f04471350437fd6880e09e6 878 Gene3D G3DSA:2.40.30.130 457 550 6.2E-10 T 18-10-2018 RU84_16665 2be2628180e854f1b16983a7aeaae43b 128 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 122 3.8E-7 T 18-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RU84_16665 2be2628180e854f1b16983a7aeaae43b 128 Gene3D G3DSA:3.10.180.10 7 125 2.5E-39 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_16665 2be2628180e854f1b16983a7aeaae43b 128 SUPERFAMILY SSF54593 1 123 1.79E-24 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_01360 0f7e26c0e1265ff764b25604b5ed53eb 472 ProSitePatterns PS00218 Amino acid permeases signature. 52 83 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_01360 0f7e26c0e1265ff764b25604b5ed53eb 472 Gene3D G3DSA:1.20.1740.10 19 472 3.9E-62 T 18-10-2018 RU84_01360 0f7e26c0e1265ff764b25604b5ed53eb 472 Pfam PF00324 Amino acid permease 27 471 1.7E-117 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_01360 0f7e26c0e1265ff764b25604b5ed53eb 472 PIRSF PIRSF006060 1 472 1.9E-71 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Pfam PF02310 B12 binding domain 749 842 4.6E-18 T 18-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Gene3D G3DSA:3.10.196.10 913 1223 3.5E-125 T 18-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Pfam PF00809 Pterin binding enzyme 357 595 1.2E-56 T 18-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 SUPERFAMILY SSF47644 653 740 7.19E-28 T 18-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 SUPERFAMILY SSF82282 6 396 1.57E-117 T 18-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 TIGRFAM TIGR02082 metH: methionine synthase 12 1193 0.0 T 18-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 SMART SM01018 658 741 8.6E-43 T 18-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Gene3D G3DSA:1.10.1240.10 650 738 6.8E-40 T 18-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Pfam PF02607 B12 binding domain 660 733 9.3E-24 T 18-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Pfam PF02574 Homocysteine S-methyltransferase 16 322 3.7E-79 T 18-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 PIRSF PIRSF000381 1 1196 0.0 T 18-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 SUPERFAMILY SSF52242 744 895 1.18E-44 T 18-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 SUPERFAMILY SSF51717 353 621 3.14E-90 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 SUPERFAMILY SSF56507 907 1224 1.2E-114 T 18-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Gene3D G3DSA:3.20.20.20 337 645 2.7E-132 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 940 1209 1.0E-112 T 18-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Gene3D G3DSA:1.10.288.10 938 1093 3.5E-125 T 18-10-2018 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Gene3D G3DSA:3.20.20.330 2 336 6.6E-128 T 18-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 RU84_12890 2a42e899b9879d36db7eddae5d22b4e7 1228 Gene3D G3DSA:3.40.50.280 745 897 8.8E-55 T 18-10-2018 RU84_07000 94992acc8a6dcadd8df556b16c92014e 749 Pfam PF00593 TonB dependent receptor 265 724 4.0E-38 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_07000 94992acc8a6dcadd8df556b16c92014e 749 Gene3D G3DSA:2.170.130.10 45 176 1.9E-16 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_07000 94992acc8a6dcadd8df556b16c92014e 749 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 171 2.9E-15 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_07000 94992acc8a6dcadd8df556b16c92014e 749 SUPERFAMILY SSF56935 56 748 2.53E-88 T 18-10-2018 RU84_07000 94992acc8a6dcadd8df556b16c92014e 749 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 91 731 6.3E-71 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_07000 94992acc8a6dcadd8df556b16c92014e 749 Gene3D G3DSA:2.40.170.20 195 748 1.8E-58 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_00540 1a49f138c2c42a902ad71924b6536b3b 455 PIRSF PIRSF006603 1 454 6.2E-105 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_00540 1a49f138c2c42a902ad71924b6536b3b 455 Pfam PF01554 MatE 23 184 1.8E-35 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_00540 1a49f138c2c42a902ad71924b6536b3b 455 Pfam PF01554 MatE 252 413 6.4E-27 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_00540 1a49f138c2c42a902ad71924b6536b3b 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 424 3.3E-73 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_10410 60e85e46cd28be95fa329759a617c430 663 Gene3D G3DSA:2.40.50.100 580 658 6.6E-22 T 18-10-2018 RU84_10410 60e85e46cd28be95fa329759a617c430 663 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.9E-45 T 18-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10410 60e85e46cd28be95fa329759a617c430 663 SUPERFAMILY SSF52440 1 113 5.11E-49 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_10410 60e85e46cd28be95fa329759a617c430 663 Pfam PF00364 Biotin-requiring enzyme 589 654 2.3E-15 T 18-10-2018 IPR000089 Biotin/lipoyl attachment RU84_10410 60e85e46cd28be95fa329759a617c430 663 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 612 629 - T 18-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10410 60e85e46cd28be95fa329759a617c430 663 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 153 167 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_10410 60e85e46cd28be95fa329759a617c430 663 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_10410 60e85e46cd28be95fa329759a617c430 663 SUPERFAMILY SSF51230 581 655 9.82E-20 T 18-10-2018 IPR011053 Single hybrid motif RU84_10410 60e85e46cd28be95fa329759a617c430 663 SUPERFAMILY SSF56059 83 347 6.01E-68 T 18-10-2018 RU84_10410 60e85e46cd28be95fa329759a617c430 663 SUPERFAMILY SSF51246 331 448 2.09E-37 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_10410 60e85e46cd28be95fa329759a617c430 663 Gene3D G3DSA:3.30.470.130 1 450 8.2E-196 T 18-10-2018 RU84_10410 60e85e46cd28be95fa329759a617c430 663 Pfam PF02785 Biotin carboxylase C-terminal domain 336 443 5.1E-37 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10410 60e85e46cd28be95fa329759a617c430 663 SMART SM00878 336 443 9.3E-50 T 18-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 RU84_10410 60e85e46cd28be95fa329759a617c430 663 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 323 9.2E-75 T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_18270 f4cdbad0abf8c7624eb1dc73f7dbbad7 297 SUPERFAMILY SSF53850 87 289 1.18E-40 T 18-10-2018 RU84_18270 f4cdbad0abf8c7624eb1dc73f7dbbad7 297 Gene3D G3DSA:1.10.10.10 3 88 2.6E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_18270 f4cdbad0abf8c7624eb1dc73f7dbbad7 297 Pfam PF03466 LysR substrate binding domain 87 289 6.6E-38 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_18270 f4cdbad0abf8c7624eb1dc73f7dbbad7 297 SUPERFAMILY SSF46785 4 84 2.36E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_18270 f4cdbad0abf8c7624eb1dc73f7dbbad7 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.4E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_18270 f4cdbad0abf8c7624eb1dc73f7dbbad7 297 Gene3D G3DSA:3.40.190.290 89 289 7.3E-51 T 18-10-2018 RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 Gene3D G3DSA:3.90.1150.10 291 425 7.6E-55 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 SUPERFAMILY SSF53383 4 422 1.32E-131 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 422 3.1E-147 T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 PIRSF PIRSF001434 1 425 8.5E-138 T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 Gene3D G3DSA:3.40.640.10 4 287 2.6E-102 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_01275 3797fdbdd44ae9e5bc96d1e84a884b54 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 5 422 5.7E-202 T 18-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 RU84_12885 6e985b6db7a85402ca7b0fb9cf01d33e 543 Pfam PF01384 Phosphate transporter family 83 532 2.8E-84 T 18-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 RU84_03700 2f013a7f6df464f227ef7e8ae14f7e50 415 SUPERFAMILY SSF103473 8 410 1.18E-26 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_03700 2f013a7f6df464f227ef7e8ae14f7e50 415 Pfam PF13000 Acetyl-coenzyme A transporter 1 9 157 1.7E-21 T 18-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 RU84_03700 2f013a7f6df464f227ef7e8ae14f7e50 415 Gene3D G3DSA:1.20.1250.20 2 205 4.7E-8 T 18-10-2018 RU84_03700 2f013a7f6df464f227ef7e8ae14f7e50 415 Gene3D G3DSA:1.20.1250.20 221 415 2.2E-9 T 18-10-2018 RU84_05970 205fb8cc00c7e76ba2c178f32e8d8b23 379 Pfam PF05134 Type II secretion system (T2SS), protein L 44 189 5.4E-8 T 18-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain RU84_05970 205fb8cc00c7e76ba2c178f32e8d8b23 379 PIRSF PIRSF015761 10 379 5.6E-16 T 18-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 RU84_05970 205fb8cc00c7e76ba2c178f32e8d8b23 379 Pfam PF12693 GspL periplasmic domain 232 374 2.1E-12 T 18-10-2018 IPR025691 GspL periplasmic domain RU84_05970 205fb8cc00c7e76ba2c178f32e8d8b23 379 SUPERFAMILY SSF53067 1 133 8.42E-11 T 18-10-2018 RU84_05970 205fb8cc00c7e76ba2c178f32e8d8b23 379 Gene3D G3DSA:3.30.420.380 4 154 1.3E-6 T 18-10-2018 RU84_05970 205fb8cc00c7e76ba2c178f32e8d8b23 379 Gene3D G3DSA:3.30.1360.100 298 379 1.3E-7 T 18-10-2018 RU84_01525 1dbe17bba59f013262abba7fbd980be4 64 Gene3D G3DSA:1.10.10.1100 1 57 2.3E-23 T 18-10-2018 RU84_01525 1dbe17bba59f013262abba7fbd980be4 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 51 1.3E-14 T 18-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RU84_00025 b7512468393b762ed0d0fe1479e84df1 130 PIRSF PIRSF000029 2 130 9.0E-29 T 18-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 RU84_00025 b7512468393b762ed0d0fe1479e84df1 130 SUPERFAMILY SSF47175 25 130 8.12E-24 T 18-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 RU84_00025 b7512468393b762ed0d0fe1479e84df1 130 Gene3D G3DSA:1.20.120.10 20 130 4.4E-35 T 18-10-2018 RU84_00025 b7512468393b762ed0d0fe1479e84df1 130 Pfam PF07361 Cytochrome b562 26 130 2.8E-23 T 18-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 RU84_05690 2dc277cc0b30adcf89e3afba30e97699 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 4.9E-5 T 18-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RU84_05690 2dc277cc0b30adcf89e3afba30e97699 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 4.9E-5 T 18-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RU84_05690 2dc277cc0b30adcf89e3afba30e97699 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 4.9E-5 T 18-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RU84_05690 2dc277cc0b30adcf89e3afba30e97699 257 Pfam PF01061 ABC-2 type transporter 10 219 1.3E-35 T 18-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 RU84_05690 2dc277cc0b30adcf89e3afba30e97699 257 PIRSF PIRSF006648 2 254 1.1E-20 T 18-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 RU84_13395 1e2d71f8be96625c8b6c6d5e83d5e6a0 663 SUPERFAMILY SSF51294 60 211 2.88E-18 T 18-10-2018 IPR036844 Hint domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_13395 1e2d71f8be96625c8b6c6d5e83d5e6a0 663 Gene3D G3DSA:3.40.50.300 206 359 6.3E-10 T 18-10-2018 RU84_13395 1e2d71f8be96625c8b6c6d5e83d5e6a0 663 Gene3D G3DSA:2.170.16.10 52 168 4.7E-11 T 18-10-2018 RU84_11240 77866fa4b02f2b75a03a2f1e1797accd 118 Gene3D G3DSA:1.20.1270.360 12 118 6.6E-26 T 18-10-2018 RU84_11240 77866fa4b02f2b75a03a2f1e1797accd 118 Pfam PF03860 Domain of Unknown Function (DUF326) 96 115 2.1E-5 T 18-10-2018 IPR005560 Protein of unknown function DUF326 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 PIRSF PIRSF001553 1 293 2.7E-129 T 18-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 Gene3D G3DSA:3.40.50.261 126 291 1.6E-73 T 18-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 Pfam PF02629 CoA binding domain 6 99 2.3E-30 T 18-10-2018 IPR003781 CoA-binding GO:0048037 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 238 251 - T 18-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 290 2.1E-137 T 18-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 154 183 - T 18-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 Gene3D G3DSA:3.40.50.720 1 125 7.0E-49 T 18-10-2018 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 290 42.989 T 18-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 PRINTS PR01798 Succinyl-CoA synthase signature 242 259 2.9E-36 T 18-10-2018 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 PRINTS PR01798 Succinyl-CoA synthase signature 210 223 2.9E-36 T 18-10-2018 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 PRINTS PR01798 Succinyl-CoA synthase signature 179 197 2.9E-36 T 18-10-2018 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.9E-36 T 18-10-2018 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 SMART SM00881 4 100 2.9E-36 T 18-10-2018 IPR003781 CoA-binding GO:0048037 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 SUPERFAMILY SSF51735 1 124 3.15E-40 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 Pfam PF00549 CoA-ligase 153 271 4.4E-18 T 18-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_03960 db36b395b583fe1497dd4fd8e96271d9 296 SUPERFAMILY SSF52210 125 289 1.44E-56 T 18-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 RU84_07360 72570dfa37ae34c06f3c0d1d29d6b9e8 103 PIRSF PIRSF006223 1 103 4.0E-21 T 18-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE RU84_07360 72570dfa37ae34c06f3c0d1d29d6b9e8 103 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 103 2.9E-26 T 18-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE RU84_07360 72570dfa37ae34c06f3c0d1d29d6b9e8 103 Pfam PF04358 DsrC like protein 2 103 1.8E-27 T 18-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE RU84_07360 72570dfa37ae34c06f3c0d1d29d6b9e8 103 Gene3D G3DSA:1.10.10.370 33 103 3.2E-19 T 18-10-2018 RU84_07360 72570dfa37ae34c06f3c0d1d29d6b9e8 103 Gene3D G3DSA:3.30.1420.10 1 29 2.0E-7 T 18-10-2018 RU84_07360 72570dfa37ae34c06f3c0d1d29d6b9e8 103 SUPERFAMILY SSF69721 2 103 5.62E-29 T 18-10-2018 IPR025526 DsrC-like domain superfamily RU84_03275 d99830f6be5669481e5a5fda02073e31 611 SUPERFAMILY SSF54980 406 521 2.69E-28 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Pfam PF03144 Elongation factor Tu domain 2 227 297 2.6E-8 T 18-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Pfam PF00009 Elongation factor Tu GTP binding domain 5 202 2.6E-51 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Gene3D G3DSA:3.30.70.240 397 490 1.3E-133 T 18-10-2018 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 607 1.9E-285 T 18-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 147 2.7E-23 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Gene3D G3DSA:2.40.30.10 207 307 2.6E-35 T 18-10-2018 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Pfam PF00679 Elongation factor G C-terminus 405 485 2.2E-23 T 18-10-2018 IPR000640 Elongation factor EFG, domain V-like RU84_03275 d99830f6be5669481e5a5fda02073e31 611 SMART SM00838 406 491 0.003 T 18-10-2018 IPR000640 Elongation factor EFG, domain V-like RU84_03275 d99830f6be5669481e5a5fda02073e31 611 SUPERFAMILY SSF54980 310 395 1.83E-15 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_03275 d99830f6be5669481e5a5fda02073e31 611 SUPERFAMILY SSF52540 4 227 7.02E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Gene3D G3DSA:3.40.50.300 3 206 2.0E-62 T 18-10-2018 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Gene3D G3DSA:2.40.50.250 491 607 1.3E-133 T 18-10-2018 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 SUPERFAMILY SSF50447 159 307 8.94E-33 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_03275 d99830f6be5669481e5a5fda02073e31 611 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 PRINTS PR00315 GTP-binding elongation factor signature 53 61 1.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-14 T 18-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 RU84_03275 d99830f6be5669481e5a5fda02073e31 611 Gene3D G3DSA:3.30.70.870 314 598 1.3E-133 T 18-10-2018 RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 SUPERFAMILY SSF53187 3 376 2.0E-62 T 18-10-2018 RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 SUPERFAMILY SSF55031 181 289 1.64E-31 T 18-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 8 375 8.6E-172 T 18-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 53.056 T 18-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 Pfam PF01546 Peptidase family M20/M25/M40 64 374 1.2E-42 T 18-10-2018 IPR002933 Peptidase M20 GO:0016787 RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 Pfam PF07687 Peptidase dimerisation domain 177 284 1.5E-25 T 18-10-2018 IPR011650 Peptidase M20, dimerisation domain RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 Gene3D G3DSA:3.30.70.360 181 294 1.4E-130 T 18-10-2018 RU84_03415 03a8f4b64e507e0d3af0a95b014798dc 377 Gene3D G3DSA:3.40.630.10 12 364 1.4E-130 T 18-10-2018 RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 SUPERFAMILY SSF46689 282 331 2.28E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 23 203 3.1E-37 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 Gene3D G3DSA:1.10.10.60 225 332 2.4E-23 T 18-10-2018 RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 Pfam PF12833 Helix-turn-helix domain 253 329 1.8E-17 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 3.9E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 3.9E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_14880 4d79c3adcc2c247de92c0d9e7be15f44 335 SMART SM00342 246 328 8.7E-23 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_04965 c499da8e44c0bb20730f06400f3b956d 418 SUPERFAMILY SSF53659 4 416 7.87E-142 T 18-10-2018 RU84_04965 c499da8e44c0bb20730f06400f3b956d 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 412 4.3E-111 T 18-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RU84_04965 c499da8e44c0bb20730f06400f3b956d 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 303 322 - T 18-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 RU84_04965 c499da8e44c0bb20730f06400f3b956d 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 417 1.4E-219 T 18-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 RU84_04965 c499da8e44c0bb20730f06400f3b956d 418 Gene3D G3DSA:3.40.718.10 1 417 3.7E-180 T 18-10-2018 RU84_04965 c499da8e44c0bb20730f06400f3b956d 418 SMART SM01329 30 412 7.2E-177 T 18-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 RU84_17640 e2b020c06e94d67373ae0cb35a0e57cf 315 Pfam PF05726 Pirin C-terminal cupin domain 191 287 4.9E-17 T 18-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 RU84_17640 e2b020c06e94d67373ae0cb35a0e57cf 315 SUPERFAMILY SSF51182 34 297 2.45E-68 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_17640 e2b020c06e94d67373ae0cb35a0e57cf 315 PIRSF PIRSF006232 19 298 8.6E-73 T 18-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RU84_17640 e2b020c06e94d67373ae0cb35a0e57cf 315 Pfam PF02678 Pirin 40 138 6.2E-29 T 18-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RU84_17640 e2b020c06e94d67373ae0cb35a0e57cf 315 Gene3D G3DSA:2.60.120.10 20 263 7.2E-62 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_13095 e8320fc9f45456c58e2f270ed79825b7 688 ProSitePatterns PS01303 BCCT family of transporters signature. 327 336 - T 18-10-2018 IPR018093 BCCT transporter, conserved site RU84_13095 e8320fc9f45456c58e2f270ed79825b7 688 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 64 511 5.7E-171 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_13095 e8320fc9f45456c58e2f270ed79825b7 688 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 26 511 8.3E-177 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_10160 3b452566834f0029e4b063f350602bc6 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 1.8E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10160 3b452566834f0029e4b063f350602bc6 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 1.8E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10160 3b452566834f0029e4b063f350602bc6 496 SUPERFAMILY SSF53383 116 492 8.62E-82 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_10160 3b452566834f0029e4b063f350602bc6 496 SMART SM00345 27 86 5.0E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10160 3b452566834f0029e4b063f350602bc6 496 SUPERFAMILY SSF46785 21 88 1.93E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10160 3b452566834f0029e4b063f350602bc6 496 Gene3D G3DSA:3.40.640.10 122 484 4.3E-107 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_10160 3b452566834f0029e4b063f350602bc6 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 86 2.6E-15 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10160 3b452566834f0029e4b063f350602bc6 496 Pfam PF00155 Aminotransferase class I and II 164 353 1.4E-14 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_10160 3b452566834f0029e4b063f350602bc6 496 Gene3D G3DSA:1.10.10.10 13 93 3.1E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06730 d881fcffd8378e417ee60c380dcc1e6c 211 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 11 211 29.345 T 18-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 RU84_06730 d881fcffd8378e417ee60c380dcc1e6c 211 SUPERFAMILY SSF47240 48 180 7.86E-16 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_06730 d881fcffd8378e417ee60c380dcc1e6c 211 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 50 209 1.9E-41 T 18-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 RU84_07830 509087c0bc848598279508a6d2b42cb7 120 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 17 115 1.8E-34 T 18-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RU84_07830 509087c0bc848598279508a6d2b42cb7 120 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 12 116 21.79 T 18-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 RU84_13135 0429989a7ad9f1af4818024f38e1545c 444 Gene3D G3DSA:1.20.1740.10 2 443 9.7E-61 T 18-10-2018 RU84_13135 0429989a7ad9f1af4818024f38e1545c 444 PIRSF PIRSF006060 3 443 8.9E-52 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_13135 0429989a7ad9f1af4818024f38e1545c 444 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 438 2.5E-146 T 18-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 RU84_13135 0429989a7ad9f1af4818024f38e1545c 444 Pfam PF13520 Amino acid permease 6 408 5.0E-62 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 SUPERFAMILY SSF51905 4 399 3.03E-55 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 Gene3D G3DSA:2.40.30.10 192 344 1.8E-122 T 18-10-2018 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 367 374 6.4E-8 T 18-10-2018 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 168 6.4E-8 T 18-10-2018 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 6.4E-8 T 18-10-2018 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 Pfam PF03486 HI0933-like protein 7 397 9.7E-141 T 18-10-2018 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 SUPERFAMILY SSF160996 194 345 3.79E-34 T 18-10-2018 RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 8 397 1.7E-121 T 18-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 Gene3D G3DSA:3.50.50.60 9 393 1.8E-122 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_14680 5af905b55b83f1106cd1d3cbcacb7e5f 399 Gene3D G3DSA:1.10.8.260 265 327 1.8E-122 T 18-10-2018 IPR023166 HI0933-like insert domain superfamily RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 SUPERFAMILY SSF53383 15 401 2.42E-126 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 3.2E-219 T 18-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 15 399 4.0E-154 T 18-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 Gene3D G3DSA:3.90.1150.10 25 392 1.9E-151 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 PIRSF PIRSF000521 167 402 3.0E-38 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 PIRSF PIRSF000521 28 160 6.6E-4 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 70.592 T 18-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 Pfam PF00202 Aminotransferase class-III 25 399 2.8E-123 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01735 3d676ef01e5a2ecb26f7208b9842a55f 404 Gene3D G3DSA:3.40.640.10 59 304 1.9E-151 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_18480 14ebdea1ead386753074e9303f824f60 139 SMART SM00530 17 72 2.8E-8 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_18480 14ebdea1ead386753074e9303f824f60 139 Gene3D G3DSA:1.10.260.40 2 77 2.2E-10 T 18-10-2018 RU84_18480 14ebdea1ead386753074e9303f824f60 139 SUPERFAMILY SSF47413 6 73 4.5E-13 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_18480 14ebdea1ead386753074e9303f824f60 139 Pfam PF01381 Helix-turn-helix 22 70 1.6E-8 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_06190 7d4a2787307e64087f817b0a1cc25ae3 382 SUPERFAMILY SSF53474 62 377 4.05E-31 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_06190 7d4a2787307e64087f817b0a1cc25ae3 382 Pfam PF00561 alpha/beta hydrolase fold 95 360 8.2E-14 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_14840 b362524f2b63d6732cea86298db0c75d 109 ProDom PD888784 DARCYNIN HOMOLOG 36 102 4.0E-19 T 18-10-2018 RU84_14840 b362524f2b63d6732cea86298db0c75d 109 Pfam PF17074 Darcynin, domain of unknown function 5 103 3.0E-17 T 18-10-2018 IPR031409 Darcynin RU84_00035 69d00873befb152c42d3d31e0cee86be 643 SUPERFAMILY SSF52540 2 253 5.6E-46 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00035 69d00873befb152c42d3d31e0cee86be 643 SUPERFAMILY SSF52540 293 518 1.33E-43 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00035 69d00873befb152c42d3d31e0cee86be 643 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_00035 69d00873befb152c42d3d31e0cee86be 643 Pfam PF00005 ABC transporter 18 177 1.9E-19 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_00035 69d00873befb152c42d3d31e0cee86be 643 Pfam PF00005 ABC transporter 329 459 7.4E-19 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_00035 69d00873befb152c42d3d31e0cee86be 643 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_00035 69d00873befb152c42d3d31e0cee86be 643 Gene3D G3DSA:3.40.50.300 274 539 9.8E-55 T 18-10-2018 RU84_00035 69d00873befb152c42d3d31e0cee86be 643 Gene3D G3DSA:3.40.50.300 1 258 6.1E-55 T 18-10-2018 RU84_00035 69d00873befb152c42d3d31e0cee86be 643 SMART SM00382 336 503 9.6E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_00035 69d00873befb152c42d3d31e0cee86be 643 SMART SM00382 26 222 6.4E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_00035 69d00873befb152c42d3d31e0cee86be 643 Pfam PF12848 ABC transporter 216 294 1.7E-29 T 18-10-2018 IPR032781 ABC-transporter extension domain RU84_07370 c7356ba57b04fe82cde5ebc3f4a0ff99 116 Gene3D G3DSA:3.40.1260.10 1 115 4.4E-14 T 18-10-2018 IPR027396 DsrEFH-like RU84_07370 c7356ba57b04fe82cde5ebc3f4a0ff99 116 SUPERFAMILY SSF75169 2 116 1.97E-6 T 18-10-2018 IPR027396 DsrEFH-like RU84_16355 f9217fca09ab82251795320d0c6e1de6 613 Gene3D G3DSA:3.40.50.12780 36 470 1.2E-62 T 18-10-2018 RU84_16355 f9217fca09ab82251795320d0c6e1de6 613 Pfam PF00501 AMP-binding enzyme 51 477 2.7E-61 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_16355 f9217fca09ab82251795320d0c6e1de6 613 SUPERFAMILY SSF56801 50 577 4.06E-97 T 18-10-2018 RU84_16355 f9217fca09ab82251795320d0c6e1de6 613 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 565 1.1E-7 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_16355 f9217fca09ab82251795320d0c6e1de6 613 ProSitePatterns PS00455 Putative AMP-binding domain signature. 218 229 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_16355 f9217fca09ab82251795320d0c6e1de6 613 Gene3D G3DSA:3.30.300.30 473 582 5.0E-13 T 18-10-2018 RU84_03875 7db869094969ba3e062718a8768fff42 177 Gene3D G3DSA:3.30.1050.10 19 134 4.5E-6 T 18-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RU84_03875 7db869094969ba3e062718a8768fff42 177 SUPERFAMILY SSF55718 49 131 2.03E-5 T 18-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RU84_14745 981c671652da48cdc212b616ed32d125 173 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 161 1.7E-32 T 18-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14745 981c671652da48cdc212b616ed32d125 173 Gene3D G3DSA:1.20.120.1200 1 163 1.6E-44 T 18-10-2018 RU84_01835 8c3a150f02093c87189933e7713c70a2 366 SUPERFAMILY SSF54631 227 359 6.11E-29 T 18-10-2018 RU84_01835 8c3a150f02093c87189933e7713c70a2 366 SMART SM00116 244 292 0.0076 T 18-10-2018 IPR000644 CBS domain RU84_01835 8c3a150f02093c87189933e7713c70a2 366 SMART SM00116 312 359 2.7E-8 T 18-10-2018 IPR000644 CBS domain RU84_01835 8c3a150f02093c87189933e7713c70a2 366 Pfam PF04982 HPP family 54 173 1.2E-39 T 18-10-2018 IPR007065 HPP RU84_01835 8c3a150f02093c87189933e7713c70a2 366 Gene3D G3DSA:3.10.580.10 208 295 1.0E-11 T 18-10-2018 RU84_01835 8c3a150f02093c87189933e7713c70a2 366 Gene3D G3DSA:3.10.580.10 301 366 4.4E-13 T 18-10-2018 RU84_01835 8c3a150f02093c87189933e7713c70a2 366 Pfam PF00571 CBS domain 305 358 3.9E-12 T 18-10-2018 IPR000644 CBS domain RU84_01835 8c3a150f02093c87189933e7713c70a2 366 Pfam PF00571 CBS domain 239 290 1.9E-8 T 18-10-2018 IPR000644 CBS domain RU84_03545 614a136a75929b90b8f7122a5720b5d6 192 Pfam PF01965 DJ-1/PfpI family 3 184 2.0E-49 T 18-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RU84_03545 614a136a75929b90b8f7122a5720b5d6 192 SUPERFAMILY SSF52317 1 186 6.66E-48 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_03545 614a136a75929b90b8f7122a5720b5d6 192 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 4 186 4.5E-52 T 18-10-2018 IPR006286 Deglycase PfpI RU84_03545 614a136a75929b90b8f7122a5720b5d6 192 Gene3D G3DSA:3.40.50.880 1 192 3.0E-51 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_04405 9c2d1417506fcf426c74a490cb597ab6 373 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 79 315 7.2E-13 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_04405 9c2d1417506fcf426c74a490cb597ab6 373 SUPERFAMILY SSF111369 78 140 8.76E-6 T 18-10-2018 RU84_04405 9c2d1417506fcf426c74a490cb597ab6 373 SUPERFAMILY SSF111369 209 310 9.94E-9 T 18-10-2018 RU84_04405 9c2d1417506fcf426c74a490cb597ab6 373 Gene3D G3DSA:2.40.30.170 78 365 6.1E-32 T 18-10-2018 RU84_04405 9c2d1417506fcf426c74a490cb597ab6 373 Gene3D G3DSA:1.10.287.470 121 250 6.1E-32 T 18-10-2018 RU84_04405 9c2d1417506fcf426c74a490cb597ab6 373 Gene3D G3DSA:2.40.50.100 87 285 6.1E-32 T 18-10-2018 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 3.3E-63 T 18-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 SUPERFAMILY SSF55021 2 76 4.58E-22 T 18-10-2018 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 3.0E-37 T 18-10-2018 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 SUPERFAMILY SSF55021 79 161 7.75E-27 T 18-10-2018 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 8.9E-28 T 18-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 Pfam PF13710 ACT domain 13 73 5.4E-16 T 18-10-2018 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 Gene3D G3DSA:3.30.70.260 1 78 4.3E-34 T 18-10-2018 RU84_15745 8ed8788e9c0149205ea8efd91017e3c1 163 Gene3D G3DSA:3.30.70.1150 83 163 9.4E-30 T 18-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 137 1.9E-9 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 Gene3D G3DSA:2.40.110.10 140 238 2.8E-28 T 18-10-2018 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 SUPERFAMILY SSF56645 37 239 1.31E-42 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 258 390 1.3E-24 T 18-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 25 414 4.9E-195 T 18-10-2018 IPR023922 Sulphate-starvation-induced SfnB RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 Gene3D G3DSA:1.20.140.10 239 413 3.0E-55 T 18-10-2018 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 Gene3D G3DSA:1.10.540.10 32 137 3.2E-22 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 148 231 3.7E-8 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 PIRSF PIRSF016578 149 409 8.3E-25 T 18-10-2018 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 PIRSF PIRSF016578 18 114 4.8E-13 T 18-10-2018 RU84_16400 2fbc40ffa2ed63ac60a51de3c4d90c55 415 SUPERFAMILY SSF47203 246 414 1.1E-25 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_00490 2aca0b0ec077471050df66221faf370d 282 SMART SM00450 154 273 2.9E-20 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_00490 2aca0b0ec077471050df66221faf370d 282 SMART SM00450 12 127 1.1E-11 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_00490 2aca0b0ec077471050df66221faf370d 282 SUPERFAMILY SSF52821 6 131 2.49E-26 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_00490 2aca0b0ec077471050df66221faf370d 282 Pfam PF00581 Rhodanese-like domain 157 268 4.0E-17 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_00490 2aca0b0ec077471050df66221faf370d 282 Pfam PF00581 Rhodanese-like domain 14 122 6.6E-13 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_00490 2aca0b0ec077471050df66221faf370d 282 ProSitePatterns PS00683 Rhodanese C-terminal signature. 257 267 - T 18-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 RU84_00490 2aca0b0ec077471050df66221faf370d 282 Gene3D G3DSA:3.40.250.10 6 140 5.8E-27 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_00490 2aca0b0ec077471050df66221faf370d 282 Gene3D G3DSA:3.40.250.10 150 276 5.1E-29 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_00490 2aca0b0ec077471050df66221faf370d 282 SUPERFAMILY SSF52821 148 280 5.5E-30 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_03240 fb11684f35985d4914b94842be52a3d7 171 Gene3D G3DSA:3.30.700.10 7 125 1.1E-4 T 18-10-2018 RU84_03240 fb11684f35985d4914b94842be52a3d7 171 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 6.0E-4 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_03240 fb11684f35985d4914b94842be52a3d7 171 SUPERFAMILY SSF54523 7 150 2.43E-13 T 18-10-2018 RU84_03240 fb11684f35985d4914b94842be52a3d7 171 Pfam PF12019 Type II transport protein GspH 50 146 4.5E-8 T 18-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 SUPERFAMILY SSF55718 525 647 3.3E-22 T 18-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 Pfam PF14864 Alkyl sulfatase C-terminal 525 647 1.6E-17 T 18-10-2018 IPR029229 Alkyl sulfatase, C-terminal RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 Gene3D G3DSA:1.25.40.880 376 516 4.1E-55 T 18-10-2018 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 Gene3D G3DSA:3.30.1050.10 518 649 4.6E-23 T 18-10-2018 IPR036527 SCP2 sterol-binding domain superfamily RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 SUPERFAMILY SSF56281 26 517 5.74E-141 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 SMART SM00849 119 340 1.0E-14 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 Gene3D G3DSA:3.60.15.30 23 375 8.1E-147 T 18-10-2018 RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 Pfam PF00753 Metallo-beta-lactamase superfamily 115 326 4.5E-32 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_02440 5566bfa5d68d7f4e9aeddaca5c5f2805 651 Pfam PF14863 Alkyl sulfatase dimerisation 379 514 1.5E-54 T 18-10-2018 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 RU84_02265 7b994bcf1d51354035b319a5bc6e2db5 191 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 191 1.1E-85 T 18-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 RU84_02265 7b994bcf1d51354035b319a5bc6e2db5 191 SUPERFAMILY SSF53271 4 189 8.32E-45 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_02265 7b994bcf1d51354035b319a5bc6e2db5 191 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 42.159 T 18-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 RU84_02265 7b994bcf1d51354035b319a5bc6e2db5 191 Gene3D G3DSA:3.40.50.2020 3 188 2.0E-52 T 18-10-2018 RU84_19340 45d607634957e37b26a01c922499fd57 495 ProSitePatterns PS01130 SLC26A transporters signature. 42 63 - T 18-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 RU84_19340 45d607634957e37b26a01c922499fd57 495 Gene3D G3DSA:3.30.750.24 388 484 1.2E-30 T 18-10-2018 IPR036513 STAS domain superfamily RU84_19340 45d607634957e37b26a01c922499fd57 495 Pfam PF00916 Sulfate permease family 143 347 8.2E-28 T 18-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RU84_19340 45d607634957e37b26a01c922499fd57 495 SUPERFAMILY SSF52091 393 485 3.73E-13 T 18-10-2018 IPR036513 STAS domain superfamily RU84_19340 45d607634957e37b26a01c922499fd57 495 Pfam PF01740 STAS domain 395 486 2.2E-11 T 18-10-2018 IPR002645 STAS domain RU84_06045 f0ed8fe78e1858ba538518088541329e 267 SMART SM00220 18 265 0.0084 T 18-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RU84_06045 f0ed8fe78e1858ba538518088541329e 267 Pfam PF00069 Protein kinase domain 110 255 3.5E-14 T 18-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 RU84_06045 f0ed8fe78e1858ba538518088541329e 267 SUPERFAMILY SSF56112 36 262 2.22E-22 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_06045 f0ed8fe78e1858ba538518088541329e 267 Gene3D G3DSA:1.10.510.10 108 266 1.2E-20 T 18-10-2018 RU84_01595 ec1d7644aada9a0a57277b178a452349 182 SUPERFAMILY SSF50447 10 98 3.43E-22 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_01595 ec1d7644aada9a0a57277b178a452349 182 Pfam PF05239 PRC-barrel domain 102 177 2.6E-7 T 18-10-2018 IPR027275 PRC-barrel domain RU84_01595 ec1d7644aada9a0a57277b178a452349 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 182 22.849 T 18-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RU84_01595 ec1d7644aada9a0a57277b178a452349 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 12 179 5.2E-45 T 18-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 RU84_01595 ec1d7644aada9a0a57277b178a452349 182 Gene3D G3DSA:2.30.30.240 99 182 1.2E-32 T 18-10-2018 RU84_01595 ec1d7644aada9a0a57277b178a452349 182 SUPERFAMILY SSF50346 104 179 1.33E-18 T 18-10-2018 IPR011033 PRC-barrel-like superfamily RU84_01595 ec1d7644aada9a0a57277b178a452349 182 Pfam PF01782 RimM N-terminal domain 13 95 4.2E-23 T 18-10-2018 IPR002676 RimM, N-terminal GO:0006364 RU84_01595 ec1d7644aada9a0a57277b178a452349 182 Gene3D G3DSA:2.40.30.60 1 98 1.4E-36 T 18-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 RU84_10885 5cefa380722d952f307d47068632352d 268 SUPERFAMILY SSF160920 15 261 3.01E-109 T 18-10-2018 IPR038021 Putative hydro-lyase RU84_10885 5cefa380722d952f307d47068632352d 268 Hamap MF_01830 Putative hydro-lyase . 14 268 51.28 T 18-10-2018 IPR016938 Uncharacterised protein family UPF0317 RU84_10885 5cefa380722d952f307d47068632352d 268 Gene3D G3DSA:3.30.2040.10 128 240 3.4E-92 T 18-10-2018 RU84_10885 5cefa380722d952f307d47068632352d 268 PIRSF PIRSF029755 3 268 3.9E-117 T 18-10-2018 IPR016938 Uncharacterised protein family UPF0317 RU84_10885 5cefa380722d952f307d47068632352d 268 Gene3D G3DSA:3.40.1640.10 23 256 3.4E-92 T 18-10-2018 RU84_10885 5cefa380722d952f307d47068632352d 268 Pfam PF07286 Protein of unknown function (DUF1445) 118 260 1.6E-68 T 18-10-2018 IPR009906 D-glutamate cyclase RU84_00405 2fd9921168be9979f7c472309a63ac89 306 PRINTS PR00116 Arginase signature 266 280 1.4E-8 T 18-10-2018 IPR006035 Ureohydrolase GO:0046872 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 PRINTS PR00116 Arginase signature 112 127 1.4E-8 T 18-10-2018 IPR006035 Ureohydrolase GO:0046872 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 PRINTS PR00116 Arginase signature 231 260 1.4E-8 T 18-10-2018 IPR006035 Ureohydrolase GO:0046872 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 TIGRFAM TIGR01227 hutG: formimidoylglutamase 18 303 2.1E-89 T 18-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 Hamap MF_00737 Formimidoylglutamase [hutG]. 2 305 39.677 T 18-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 Pfam PF00491 Arginase family 32 303 8.5E-63 T 18-10-2018 IPR006035 Ureohydrolase GO:0046872 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 ProSitePatterns PS01053 Arginase family signature. 234 255 - T 18-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 PIRSF PIRSF036979 13 306 2.0E-31 T 18-10-2018 IPR006035 Ureohydrolase GO:0046872 RU84_00405 2fd9921168be9979f7c472309a63ac89 306 SUPERFAMILY SSF52768 11 304 2.52E-80 T 18-10-2018 IPR023696 Ureohydrolase domain superfamily RU84_00405 2fd9921168be9979f7c472309a63ac89 306 Gene3D G3DSA:3.40.800.10 1 306 8.2E-112 T 18-10-2018 RU84_07730 47a4cca0e3b06fb06bf3da20d5ffceb4 33 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 27 5.1E-14 T 18-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 RU84_07730 47a4cca0e3b06fb06bf3da20d5ffceb4 33 Pfam PF08173 Membrane bound YbgT-like protein 1 26 2.0E-12 T 18-10-2018 IPR012994 Membrane bound YbgT-like RU84_09565 90d6ef8134725892cedd2b5423c447ec 157 Pfam PF04229 GrpB protein 8 155 4.6E-22 T 18-10-2018 IPR007344 GrpB/Dephospho-CoA kinase RU84_09565 90d6ef8134725892cedd2b5423c447ec 157 Gene3D G3DSA:3.30.460.10 5 157 1.3E-19 T 18-10-2018 RU84_09565 90d6ef8134725892cedd2b5423c447ec 157 SUPERFAMILY SSF81301 8 155 1.96E-32 T 18-10-2018 RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 Gene3D G3DSA:3.40.50.300 1 266 1.0E-52 T 18-10-2018 RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1137 4.7E-277 T 18-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 SUPERFAMILY SSF52540 1 1122 1.06E-49 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1130 6.4E-54 T 18-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1139 21.698 T 18-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 SUPERFAMILY SSF75553 473 626 1.83E-5 T 18-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 Gene3D G3DSA:3.40.50.300 924 1144 8.3E-47 T 18-10-2018 RU84_14545 bb0bcde127c67e9265d252d404ef43c1 1149 PIRSF PIRSF005719 1 1144 4.7E-234 T 18-10-2018 IPR024704 Structural maintenance of chromosomes protein RU84_02155 cb5d3b76598b3bc0357b932f5712d8ba 85 Gene3D G3DSA:1.10.150.250 3 84 1.1E-20 T 18-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily RU84_02155 cb5d3b76598b3bc0357b932f5712d8ba 85 SUPERFAMILY SSF109910 6 80 1.57E-18 T 18-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily RU84_02155 cb5d3b76598b3bc0357b932f5712d8ba 85 Pfam PF03937 Flavinator of succinate dehydrogenase 10 76 6.9E-18 T 18-10-2018 IPR005631 Flavinator of succinate dehydrogenase RU84_03920 297c1c6a0408f63aa7ef750686531449 130 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 3 123 8.2E-24 T 18-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03920 297c1c6a0408f63aa7ef750686531449 130 PIRSF PIRSF000178 1 129 7.2E-21 T 18-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03920 297c1c6a0408f63aa7ef750686531449 130 SUPERFAMILY SSF81343 22 128 1.44E-23 T 18-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03920 297c1c6a0408f63aa7ef750686531449 130 Gene3D G3DSA:1.20.1300.10 1 129 5.5E-32 T 18-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03920 297c1c6a0408f63aa7ef750686531449 130 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 20 127 1.3E-30 T 18-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_10715 e37d340f3b640fb37592b87342b9238f 319 Pfam PF08223 PaaX-like protein C-terminal domain 189 282 9.8E-24 T 18-10-2018 IPR013225 PaaX-like, C-terminal RU84_10715 e37d340f3b640fb37592b87342b9238f 319 PIRSF PIRSF020623 1 308 2.8E-93 T 18-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 RU84_10715 e37d340f3b640fb37592b87342b9238f 319 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 22 305 1.7E-79 T 18-10-2018 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 RU84_10715 e37d340f3b640fb37592b87342b9238f 319 Gene3D G3DSA:1.10.10.10 19 101 2.1E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10715 e37d340f3b640fb37592b87342b9238f 319 Pfam PF07848 PaaX-like protein 20 87 4.5E-22 T 18-10-2018 IPR012906 PaaX-like, N-terminal RU84_10715 e37d340f3b640fb37592b87342b9238f 319 Gene3D G3DSA:1.20.58.1460 213 288 3.2E-5 T 18-10-2018 RU84_16490 a96a701593a94e2b312b5215655b2a2a 64 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 57 18.057 T 18-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RU84_16490 a96a701593a94e2b312b5215655b2a2a 64 Gene3D G3DSA:3.30.50.10 2 62 2.0E-21 T 18-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 RU84_16490 a96a701593a94e2b312b5215655b2a2a 64 Pfam PF03884 DNA gyrase inhibitor YacG 6 53 1.4E-22 T 18-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 RU84_16490 a96a701593a94e2b312b5215655b2a2a 64 SUPERFAMILY SSF57716 2 59 8.98E-20 T 18-10-2018 RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 Pfam PF02687 FtsX-like permease family 568 657 3.1E-13 T 18-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 Gene3D G3DSA:3.40.50.300 4 288 6.1E-69 T 18-10-2018 RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 Pfam PF12704 MacB-like periplasmic core domain 286 505 6.7E-40 T 18-10-2018 IPR025857 MacB-like periplasmic core domain RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 SMART SM00382 35 229 1.0E-15 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 Pfam PF00005 ABC transporter 26 174 7.2E-30 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 SUPERFAMILY SSF52540 6 227 1.08E-66 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15780 3cf22f10f9b1eb832deddb432732343d 664 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_11520 757d61355fea375f34907e2bcc5f4770 84 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 2.2E-29 T 18-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RU84_11520 757d61355fea375f34907e2bcc5f4770 84 Gene3D G3DSA:3.30.70.1680 1 59 1.2E-28 T 18-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 RU84_11520 757d61355fea375f34907e2bcc5f4770 84 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 1.0E-20 T 18-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RU84_11520 757d61355fea375f34907e2bcc5f4770 84 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 64 17.498 T 18-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RU84_11520 757d61355fea375f34907e2bcc5f4770 84 SUPERFAMILY SSF117130 1 54 3.4E-20 T 18-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 RU84_11520 757d61355fea375f34907e2bcc5f4770 84 Pfam PF02599 Global regulator protein family 1 52 1.0E-26 T 18-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 SUPERFAMILY SSF53901 276 399 2.3E-42 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 85 103 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 Pfam PF02803 Thiolase, C-terminal domain 275 398 1.4E-45 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 PIRSF PIRSF000429 1 401 1.8E-129 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 Gene3D G3DSA:3.40.47.10 6 281 2.5E-148 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 5.5E-137 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 Gene3D G3DSA:3.40.47.10 140 397 2.5E-148 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 SUPERFAMILY SSF53901 3 275 1.35E-72 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 Pfam PF00108 Thiolase, N-terminal domain 5 267 5.3E-71 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_10490 1199ea24673eb9e4f04c20b47346837b 401 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 18-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 509 525 1.8E-23 T 18-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 470 482 1.8E-23 T 18-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 580 591 1.8E-23 T 18-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 488 500 1.8E-23 T 18-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 Gene3D G3DSA:3.40.390.10 43 682 1.6E-245 T 18-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 SUPERFAMILY SSF55486 28 682 1.26E-215 T 18-10-2018 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 Pfam PF01431 Peptidase family M13 478 679 8.4E-76 T 18-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 Pfam PF05649 Peptidase family M13 50 426 1.4E-104 T 18-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 RU84_03525 b35dc231badb91ea03dacc284c66a992 682 Gene3D G3DSA:1.10.1380.10 74 465 1.6E-245 T 18-10-2018 RU84_14285 b860875b8ac37475f21ff4411a4df2c4 76 Pfam PF04448 Protein of unknown function (DUF551) 2 75 1.1E-8 T 18-10-2018 IPR007539 Domain of unknown function DUF551 RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 Gene3D G3DSA:3.40.190.10 118 217 5.4E-107 T 18-10-2018 RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 SMART SM00062 38 254 3.0E-25 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 Gene3D G3DSA:1.10.8.450 249 281 5.4E-107 T 18-10-2018 RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 Pfam PF09084 NMT1/THI5 like 63 258 9.6E-18 T 18-10-2018 IPR015168 SsuA/THI5-like RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 SUPERFAMILY SSF53850 37 268 1.5E-50 T 18-10-2018 RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 40 318 2.1E-70 T 18-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 RU84_18150 e9e7f442de013234fd57b4e26bc0e459 322 Gene3D G3DSA:3.40.190.10 39 311 5.4E-107 T 18-10-2018 RU84_08800 dbecec0acff2b9cf749697253bb643d2 320 Pfam PF00676 Dehydrogenase E1 component 14 309 5.7E-85 T 18-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 RU84_08800 dbecec0acff2b9cf749697253bb643d2 320 Gene3D G3DSA:3.40.50.970 1 320 5.7E-112 T 18-10-2018 RU84_08800 dbecec0acff2b9cf749697253bb643d2 320 SUPERFAMILY SSF52518 2 319 2.47E-91 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.6E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 Gene3D G3DSA:3.40.190.10 175 251 2.2E-8 T 18-10-2018 RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 SUPERFAMILY SSF53850 87 286 2.93E-30 T 18-10-2018 RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 Gene3D G3DSA:3.40.190.10 84 174 6.0E-18 T 18-10-2018 RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 Pfam PF03466 LysR substrate binding domain 87 285 1.4E-30 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 SUPERFAMILY SSF46785 1 110 5.44E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_01785 dc19637998a3aa818eb716d13eb83f9e 288 Gene3D G3DSA:1.10.10.10 1 83 7.0E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01870 4771b373c3b5134c22476e150a8e9787 200 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 197 43.847 T 18-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_01870 4771b373c3b5134c22476e150a8e9787 200 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 2.2E-76 T 18-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_01870 4771b373c3b5134c22476e150a8e9787 200 Gene3D G3DSA:3.40.50.10990 2 175 4.8E-71 T 18-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_01870 4771b373c3b5134c22476e150a8e9787 200 SUPERFAMILY SSF142695 3 174 7.98E-62 T 18-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_01870 4771b373c3b5134c22476e150a8e9787 200 Pfam PF00925 GTP cyclohydrolase II 8 171 6.9E-66 T 18-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 RU84_04185 fa9fb253d0213bd892c4bbb20a37183d 191 Pfam PF13430 Domain of unknown function (DUF4112) 19 118 1.3E-21 T 18-10-2018 IPR025187 Protein of unknown function DUF4112 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 Pfam PF14815 NUDIX domain 233 340 1.9E-20 T 18-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 18-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 Gene3D G3DSA:1.10.340.30 21 130 1.2E-83 T 18-10-2018 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 SUPERFAMILY SSF55811 218 340 1.26E-19 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 SMART SM00525 189 209 1.1E-4 T 18-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 ProSitePatterns PS01155 Endonuclease III family signature. 100 127 - T 18-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 Pfam PF00633 Helix-hairpin-helix motif 99 125 7.4E-7 T 18-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 Gene3D G3DSA:1.10.1670.10 9 209 1.2E-83 T 18-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 SUPERFAMILY SSF48150 6 223 3.61E-73 T 18-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 SMART SM00478 39 188 4.2E-41 T 18-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 Gene3D G3DSA:3.90.79.10 223 344 3.1E-14 T 18-10-2018 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 167 3.3E-18 T 18-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 RU84_00250 2bf5d496ae0e1075c5336f2d2940ff28 344 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 273 7.9E-108 T 18-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 RU84_04510 1e64ee77fa6e42c951cbf1156912471e 112 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 89 109 0.0014 T 18-10-2018 IPR020008 GlyGly-CTERM domain RU84_18340 433ff43bf8a3e7fbb4fdccb9bb31fb82 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 313 1.0E-117 T 18-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 RU84_18340 433ff43bf8a3e7fbb4fdccb9bb31fb82 318 Pfam PF03741 Integral membrane protein TerC family 80 282 6.2E-52 T 18-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 RU84_03390 0a4e36422142219ff43bd8a7d908f424 692 SMART SM00283 428 689 6.2E-89 T 18-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RU84_03390 0a4e36422142219ff43bd8a7d908f424 692 Gene3D G3DSA:1.10.287.950 365 691 4.6E-65 T 18-10-2018 RU84_03390 0a4e36422142219ff43bd8a7d908f424 692 SUPERFAMILY SSF58104 388 690 2.75E-70 T 18-10-2018 RU84_03390 0a4e36422142219ff43bd8a7d908f424 692 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 473 657 1.3E-41 T 18-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 RU84_10625 28d9ffe6a5af55e32598e28300041e27 345 SUPERFAMILY SSF51679 1 344 5.42E-80 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_10625 28d9ffe6a5af55e32598e28300041e27 345 Gene3D G3DSA:3.20.20.30 1 345 1.9E-79 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_10625 28d9ffe6a5af55e32598e28300041e27 345 Pfam PF00296 Luciferase-like monooxygenase 1 314 2.4E-55 T 18-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RU84_15430 d2270edc2fc13a99cc6719f7639320a2 264 Gene3D G3DSA:3.20.20.150 1 262 1.2E-66 T 18-10-2018 RU84_15430 d2270edc2fc13a99cc6719f7639320a2 264 PIRSF PIRSF006241 1 261 2.5E-93 T 18-10-2018 IPR026040 Hydroxypyruvate isomerase-like RU84_15430 d2270edc2fc13a99cc6719f7639320a2 264 SUPERFAMILY SSF51658 1 258 8.71E-69 T 18-10-2018 IPR036237 Xylose isomerase-like superfamily RU84_15430 d2270edc2fc13a99cc6719f7639320a2 264 Pfam PF01261 Xylose isomerase-like TIM barrel 21 210 1.5E-26 T 18-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain RU84_09305 7e984d298e44aab0c6a5a727f8a60b68 339 SUPERFAMILY SSF46689 291 337 4.93E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09305 7e984d298e44aab0c6a5a727f8a60b68 339 SMART SM00342 253 335 1.4E-15 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09305 7e984d298e44aab0c6a5a727f8a60b68 339 Pfam PF12833 Helix-turn-helix domain 262 335 1.2E-14 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09305 7e984d298e44aab0c6a5a727f8a60b68 339 Gene3D G3DSA:1.10.10.60 231 338 7.3E-19 T 18-10-2018 RU84_09305 7e984d298e44aab0c6a5a727f8a60b68 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 19 204 2.1E-14 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_15675 285de42a9b52080722d07c41d862fa4f 169 Gene3D G3DSA:3.90.1720.10 52 168 8.0E-30 T 18-10-2018 RU84_01200 3ff92879447b45ea30bd55273d3e182d 243 Gene3D G3DSA:3.20.20.70 2 242 1.2E-85 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_01200 3ff92879447b45ea30bd55273d3e182d 243 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 35.884 T 18-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RU84_01200 3ff92879447b45ea30bd55273d3e182d 243 SUPERFAMILY SSF51366 1 235 1.65E-74 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_01200 3ff92879447b45ea30bd55273d3e182d 243 Pfam PF00977 Histidine biosynthesis protein 3 229 9.5E-79 T 18-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RU84_01200 3ff92879447b45ea30bd55273d3e182d 243 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 233 1.8E-79 T 18-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 Gene3D G3DSA:3.30.390.30 352 477 1.6E-41 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 461 6.2E-34 T 18-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 SUPERFAMILY SSF55424 348 471 1.65E-37 T 18-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 45 55 - T 18-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 155 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 44 59 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 284 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 313 320 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 455 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 2.3E-69 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 SUPERFAMILY SSF51905 1 343 7.2E-64 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 333 3.5E-70 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 Gene3D G3DSA:3.50.50.60 162 283 1.5E-115 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 Gene3D G3DSA:3.50.50.60 5 340 1.5E-115 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 298 320 1.7E-34 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 285 1.7E-34 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.7E-34 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.7E-34 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 1.7E-34 T 18-10-2018 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 470 2.0E-157 T 18-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 RU84_03950 7d86e137e2463384dc7993688b2e1c09 477 PIRSF PIRSF000350 1 469 1.4E-84 T 18-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.9E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.9E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.9E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.4E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 Pfam PF03466 LysR substrate binding domain 91 279 1.6E-37 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 Gene3D G3DSA:1.10.10.10 1 86 4.1E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 Gene3D G3DSA:3.40.190.10 167 266 5.0E-83 T 18-10-2018 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 SUPERFAMILY SSF53850 92 290 6.34E-38 T 18-10-2018 RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 SUPERFAMILY SSF46785 2 113 6.98E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_04665 e1d38f28981e69430bc4a07b14d2d55c 307 Gene3D G3DSA:3.40.190.10 91 301 5.0E-83 T 18-10-2018 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 PRINTS PR00061 Ribosomal protein L19 signature 37 66 1.4E-41 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 PRINTS PR00061 Ribosomal protein L19 signature 91 116 1.4E-41 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 PRINTS PR00061 Ribosomal protein L19 signature 7 36 1.4E-41 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 SUPERFAMILY SSF50104 5 118 1.91E-47 T 18-10-2018 IPR008991 Translation protein SH3-like domain superfamily RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 Pfam PF01245 Ribosomal protein L19 7 116 1.6E-51 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 7 116 1.3E-50 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 5 117 31.074 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 Gene3D G3DSA:2.30.30.790 9 121 9.4E-16 T 18-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 18-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_01605 986d320309f702c97dcfac8d904c3e9d 122 PIRSF PIRSF002191 1 122 2.2E-51 T 18-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16885 3bc02eb1a48217e8ab83977be9e9f5c5 186 Gene3D G3DSA:3.40.50.1820 1 185 4.7E-41 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_16885 3bc02eb1a48217e8ab83977be9e9f5c5 186 SUPERFAMILY SSF53474 2 181 3.07E-30 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_16885 3bc02eb1a48217e8ab83977be9e9f5c5 186 Pfam PF06821 Serine hydrolase 5 180 2.9E-26 T 18-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 RU84_03865 b71e122641c62342cba1144d81a4133a 466 PIRSF PIRSF006060 8 466 4.2E-63 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_03865 b71e122641c62342cba1144d81a4133a 466 Pfam PF00324 Amino acid permease 26 391 5.1E-38 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_03865 b71e122641c62342cba1144d81a4133a 466 Gene3D G3DSA:1.20.1740.10 17 463 3.2E-70 T 18-10-2018 RU84_02380 5a7dda45740c1e388090d76718631811 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 385 5.2E-47 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_02380 5a7dda45740c1e388090d76718631811 387 Gene3D G3DSA:2.40.110.10 125 238 7.2E-41 T 18-10-2018 RU84_02380 5a7dda45740c1e388090d76718631811 387 SUPERFAMILY SSF47203 231 385 1.48E-46 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_02380 5a7dda45740c1e388090d76718631811 387 SUPERFAMILY SSF56645 5 244 6.41E-79 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_02380 5a7dda45740c1e388090d76718631811 387 Gene3D G3DSA:1.10.540.10 1 124 2.7E-34 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_02380 5a7dda45740c1e388090d76718631811 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 122 1.6E-29 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_02380 5a7dda45740c1e388090d76718631811 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 221 1.1E-22 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_02380 5a7dda45740c1e388090d76718631811 387 Gene3D G3DSA:1.20.140.10 239 387 8.0E-46 T 18-10-2018 RU84_02380 5a7dda45740c1e388090d76718631811 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 128 140 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_13390 6848092e048e581d213ba7dec3ff4515 512 Pfam PF12571 Phage tail-collar fibre protein 7 143 1.1E-5 T 18-10-2018 IPR022225 Phage tail fibre protein RU84_19315 cd2d1209a9270f51ce0e1847b46fec80 259 Pfam PF01636 Phosphotransferase enzyme family 27 242 1.6E-14 T 18-10-2018 IPR002575 Aminoglycoside phosphotransferase RU84_19315 cd2d1209a9270f51ce0e1847b46fec80 259 PIRSF PIRSF000706 1 259 6.1E-76 T 18-10-2018 IPR024165 Aminoglycoside 3-phosphotransferase GO:0005524|GO:0016773|GO:0046677 RU84_19315 cd2d1209a9270f51ce0e1847b46fec80 259 Gene3D G3DSA:3.30.200.20 1 87 9.0E-24 T 18-10-2018 RU84_19315 cd2d1209a9270f51ce0e1847b46fec80 259 Gene3D G3DSA:3.90.1200.10 95 259 5.8E-32 T 18-10-2018 RU84_19315 cd2d1209a9270f51ce0e1847b46fec80 259 SUPERFAMILY SSF56112 2 248 5.39E-35 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 18-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 618 6.7E-273 T 18-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Pfam PF13932 GidA associated domain 402 612 2.7E-75 T 18-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 SMART SM01228 543 614 1.5E-42 T 18-10-2018 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 SUPERFAMILY SSF51905 7 261 1.4E-51 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Pfam PF01134 Glucose inhibited division protein A 8 398 7.0E-164 T 18-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 621 41.647 T 18-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 18-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Gene3D G3DSA:1.10.150.570 566 619 6.9E-23 T 18-10-2018 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Gene3D G3DSA:1.10.10.1800 459 547 6.1E-23 T 18-10-2018 RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Gene3D G3DSA:3.50.50.60 301 458 8.8E-55 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_06495 3139069a5b43920c8c7450564f62e1e2 626 Gene3D G3DSA:3.50.50.60 2 229 1.8E-87 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13770 1da2001e031250a15798606714943651 302 SUPERFAMILY SSF53633 9 296 2.75E-93 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_13770 1da2001e031250a15798606714943651 302 Gene3D G3DSA:3.40.1160.10 7 299 3.3E-99 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_13770 1da2001e031250a15798606714943651 302 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 271 2.3E-80 T 18-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_13770 1da2001e031250a15798606714943651 302 Pfam PF00696 Amino acid kinase family 28 273 1.3E-45 T 18-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RU84_13770 1da2001e031250a15798606714943651 302 PIRSF PIRSF000728 13 296 3.6E-109 T 18-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_13770 1da2001e031250a15798606714943651 302 Hamap MF_00082 Acetylglutamate kinase [argB]. 27 289 50.48 T 18-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_03905 fea3d2980b2a748d1fc93a25be5c29ae 310 SMART SM00450 126 227 5.2E-23 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_03905 fea3d2980b2a748d1fc93a25be5c29ae 310 Hamap MF_00469 UPF0176 protein YceA [yceA]. 17 267 43.132 T 18-10-2018 IPR020936 Uncharacterised protein family UPF0176 RU84_03905 fea3d2980b2a748d1fc93a25be5c29ae 310 Pfam PF00581 Rhodanese-like domain 128 223 3.8E-12 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_03905 fea3d2980b2a748d1fc93a25be5c29ae 310 Gene3D G3DSA:3.30.70.100 9 110 1.2E-28 T 18-10-2018 RU84_03905 fea3d2980b2a748d1fc93a25be5c29ae 310 SUPERFAMILY SSF52821 122 252 2.06E-33 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_03905 fea3d2980b2a748d1fc93a25be5c29ae 310 Gene3D G3DSA:3.40.250.10 114 260 1.9E-50 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_03255 3f1200c2d49d001861c8fd86ae9dfca2 401 Gene3D G3DSA:3.90.1860.10 3 401 2.1E-118 T 18-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 RU84_03255 3f1200c2d49d001861c8fd86ae9dfca2 401 Pfam PF01139 tRNA-splicing ligase RtcB 31 401 2.0E-132 T 18-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 RU84_03255 3f1200c2d49d001861c8fd86ae9dfca2 401 SUPERFAMILY SSF103365 15 401 2.35E-132 T 18-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 226 233 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 Pfam PF00171 Aldehyde dehydrogenase family 38 444 5.1E-90 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 Gene3D G3DSA:3.40.605.10 33 452 7.9E-148 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 Gene3D G3DSA:3.40.309.10 230 432 7.9E-148 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 PIRSF PIRSF036492 2 482 5.9E-156 T 18-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 254 265 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_16110 b7cd3eec6e6972c1ffab46cb38a8859d 482 SUPERFAMILY SSF53720 10 476 3.01E-114 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_14715 f9a1603006a39fff1111ec0640c2643c 97 SMART SM00357 7 68 2.3E-6 T 18-10-2018 IPR011129 Cold shock domain GO:0003676 RU84_14715 f9a1603006a39fff1111ec0640c2643c 97 Pfam PF00313 'Cold-shock' DNA-binding domain 7 67 5.3E-12 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_14715 f9a1603006a39fff1111ec0640c2643c 97 PIRSF PIRSF002599 1 91 1.9E-13 T 18-10-2018 IPR012156 Cold shock, CspA GO:0003676 RU84_14715 f9a1603006a39fff1111ec0640c2643c 97 Gene3D G3DSA:2.40.50.140 1 86 1.2E-16 T 18-10-2018 RU84_14715 f9a1603006a39fff1111ec0640c2643c 97 SUPERFAMILY SSF50249 4 67 1.69E-13 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_09180 d2817c721fbb5a097868ea4f6f5386c7 144 PIRSF PIRSF000714 1 138 3.1E-47 T 18-10-2018 IPR026026 Histidine triad hydrolase, Hint-type RU84_09180 d2817c721fbb5a097868ea4f6f5386c7 144 SUPERFAMILY SSF54197 1 131 4.68E-30 T 18-10-2018 IPR036265 HIT-like superfamily RU84_09180 d2817c721fbb5a097868ea4f6f5386c7 144 Pfam PF01230 HIT domain 10 98 4.5E-12 T 18-10-2018 IPR001310 Histidine triad (HIT) protein RU84_09180 d2817c721fbb5a097868ea4f6f5386c7 144 Gene3D G3DSA:3.30.428.10 1 136 1.2E-37 T 18-10-2018 IPR036265 HIT-like superfamily RU84_05740 282d828a7fb66749d2102b54583e5710 343 SUPERFAMILY SSF46785 5 87 6.54E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_05740 282d828a7fb66749d2102b54583e5710 343 Gene3D G3DSA:1.10.10.10 4 90 1.7E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05740 282d828a7fb66749d2102b54583e5710 343 Pfam PF03466 LysR substrate binding domain 88 295 4.1E-42 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_05740 282d828a7fb66749d2102b54583e5710 343 Gene3D G3DSA:3.40.190.10 91 293 3.8E-65 T 18-10-2018 RU84_05740 282d828a7fb66749d2102b54583e5710 343 SUPERFAMILY SSF53850 89 298 2.17E-44 T 18-10-2018 RU84_05740 282d828a7fb66749d2102b54583e5710 343 Gene3D G3DSA:3.40.190.10 163 266 3.8E-65 T 18-10-2018 RU84_05740 282d828a7fb66749d2102b54583e5710 343 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 7.6E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08100 bd721eefc5cdbfb22b392264b366a268 495 Gene3D G3DSA:3.40.605.10 34 489 6.1E-165 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_08100 bd721eefc5cdbfb22b392264b366a268 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 268 275 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_08100 bd721eefc5cdbfb22b392264b366a268 495 Pfam PF00171 Aldehyde dehydrogenase family 33 491 1.2E-153 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_08100 bd721eefc5cdbfb22b392264b366a268 495 SUPERFAMILY SSF53720 8 494 1.17E-150 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_08100 bd721eefc5cdbfb22b392264b366a268 495 Gene3D G3DSA:3.40.309.10 272 460 6.1E-165 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_18350 e00124e75b3a446cfecb6c60dd738cb9 386 Gene3D G3DSA:3.30.1490.330 258 342 6.8E-18 T 18-10-2018 RU84_18350 e00124e75b3a446cfecb6c60dd738cb9 386 SUPERFAMILY SSF56059 6 383 6.0E-75 T 18-10-2018 RU84_18350 e00124e75b3a446cfecb6c60dd738cb9 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 1.0E-125 T 18-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain RU84_18350 e00124e75b3a446cfecb6c60dd738cb9 386 SUPERFAMILY SSF52440 173 274 5.75E-31 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 1.7E-253 T 18-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 Gene3D G3DSA:3.40.50.970 1 182 6.8E-73 T 18-10-2018 RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 SUPERFAMILY SSF52518 373 567 4.07E-67 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 6.1E-44 T 18-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 Gene3D G3DSA:3.40.50.970 365 573 1.1E-63 T 18-10-2018 RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 SUPERFAMILY SSF52518 4 179 7.15E-64 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 Gene3D G3DSA:3.40.50.1220 191 362 9.6E-61 T 18-10-2018 RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 1.1E-46 T 18-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 SUPERFAMILY SSF52467 190 362 2.55E-64 T 18-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RU84_15750 9e35a58d91c8ca3e9a4e94d5c64e63ab 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 166 3.8E-59 T 18-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 4.5E-54 T 18-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.999 T 18-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 SMART SM01374 1 122 9.2E-85 T 18-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 18-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 5.3E-57 T 18-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 SUPERFAMILY SSF50193 1 122 6.28E-51 T 18-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02060 7565f0bba13127ad8763ed80e9ed9605 122 Gene3D G3DSA:2.40.150.20 1 122 6.2E-54 T 18-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 PIRSF PIRSF010376 1 271 2.4E-79 T 18-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 Gene3D G3DSA:3.30.230.10 1 155 3.7E-58 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 2 262 30.728 T 18-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 257 8.2E-77 T 18-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 SUPERFAMILY SSF54211 1 154 4.48E-45 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 SUPERFAMILY SSF55060 156 271 3.07E-23 T 18-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 Pfam PF08544 GHMP kinases C terminal 204 253 1.2E-7 T 18-10-2018 IPR013750 GHMP kinase, C-terminal domain RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 Gene3D G3DSA:3.30.70.890 158 275 8.9E-21 T 18-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily RU84_14365 5b094f0cce9f1a2377bfd5a817998334 277 Pfam PF00288 GHMP kinases N terminal domain 83 140 2.9E-12 T 18-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 RU84_01825 970288d7c3f74c1167a0c9d1c6c032ea 420 SUPERFAMILY SSF102114 44 267 5.69E-14 T 18-10-2018 RU84_01825 970288d7c3f74c1167a0c9d1c6c032ea 420 SUPERFAMILY SSF47781 303 383 9.12E-13 T 18-10-2018 IPR010994 RuvA domain 2-like RU84_01825 970288d7c3f74c1167a0c9d1c6c032ea 420 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 5 418 1.4E-208 T 18-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative RU84_01825 970288d7c3f74c1167a0c9d1c6c032ea 420 Gene3D G3DSA:3.20.20.70 45 193 8.0E-10 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_01825 970288d7c3f74c1167a0c9d1c6c032ea 420 Gene3D G3DSA:1.10.150.320 312 376 7.9E-7 T 18-10-2018 RU84_18720 e70990f298c928de433ce48bdb79ad9d 385 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 262 282 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_18720 e70990f298c928de433ce48bdb79ad9d 385 Gene3D G3DSA:3.40.50.1970 1 182 4.1E-49 T 18-10-2018 RU84_18720 e70990f298c928de433ce48bdb79ad9d 385 Gene3D G3DSA:1.20.1090.10 183 384 2.1E-46 T 18-10-2018 RU84_18720 e70990f298c928de433ce48bdb79ad9d 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_18720 e70990f298c928de433ce48bdb79ad9d 385 SUPERFAMILY SSF56796 2 364 2.75E-106 T 18-10-2018 RU84_18720 e70990f298c928de433ce48bdb79ad9d 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 357 2.6E-87 T 18-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RU84_12125 6242cb0bf8b868911be06b493baed801 350 Gene3D G3DSA:1.10.3720.10 105 339 2.4E-19 T 18-10-2018 IPR035906 MetI-like superfamily RU84_12125 6242cb0bf8b868911be06b493baed801 350 SUPERFAMILY SSF161098 111 328 3.53E-13 T 18-10-2018 IPR035906 MetI-like superfamily RU84_12125 6242cb0bf8b868911be06b493baed801 350 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 135 342 1.5E-34 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 Pfam PF01084 Ribosomal protein S18 19 68 1.3E-23 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.834 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 SUPERFAMILY SSF46911 3 74 1.57E-28 T 18-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 3.6E-35 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 9.1E-18 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.1E-18 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 9.1E-18 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 9.1E-18 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 18-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 Gene3D G3DSA:4.10.640.10 1 75 7.4E-27 T 18-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06540 574f8a5447230ac47484967c0f9aa34a 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 20 71 8.0E-23 T 18-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_01555 902f92971618c91ac262c177e646f013 157 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 30 1.3E-7 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01555 902f92971618c91ac262c177e646f013 157 Pfam PF12019 Type II transport protein GspH 47 143 2.6E-5 T 18-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 RU84_01555 902f92971618c91ac262c177e646f013 157 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 29 8.0E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01555 902f92971618c91ac262c177e646f013 157 Gene3D G3DSA:3.30.700.10 10 145 1.2E-14 T 18-10-2018 RU84_01555 902f92971618c91ac262c177e646f013 157 SUPERFAMILY SSF54523 10 126 9.42E-15 T 18-10-2018 RU84_01555 902f92971618c91ac262c177e646f013 157 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_08900 fd7836cac5dbcc6e1600d70f7c6a4d8a 89 SMART SM01324 11 84 4.7E-21 T 18-10-2018 IPR025582 YARHG domain RU84_08900 fd7836cac5dbcc6e1600d70f7c6a4d8a 89 Pfam PF13308 YARHG domain 29 83 1.1E-6 T 18-10-2018 IPR025582 YARHG domain RU84_02615 48699c59348a86ac820badffa9576db8 162 Pfam PF04461 Protein of unknown function (DUF520) 2 161 2.7E-62 T 18-10-2018 IPR007551 Protein of unknown function DUF520 RU84_02615 48699c59348a86ac820badffa9576db8 162 Gene3D G3DSA:3.30.70.860 96 162 9.8E-30 T 18-10-2018 IPR035571 UPF0234-like, C-terminal RU84_02615 48699c59348a86ac820badffa9576db8 162 SUPERFAMILY SSF89963 2 87 1.88E-28 T 18-10-2018 IPR036183 YajQ-like superfamily RU84_02615 48699c59348a86ac820badffa9576db8 162 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 162 25.752 T 18-10-2018 IPR007551 Protein of unknown function DUF520 RU84_02615 48699c59348a86ac820badffa9576db8 162 SUPERFAMILY SSF89963 90 162 1.2E-27 T 18-10-2018 IPR036183 YajQ-like superfamily RU84_02615 48699c59348a86ac820badffa9576db8 162 Gene3D G3DSA:3.30.70.990 9 95 1.9E-28 T 18-10-2018 IPR035570 UPF0234, N-terminal RU84_08955 54d5657004ee2e3b3ab273871b5c919b 391 SUPERFAMILY SSF53756 7 364 3.02E-27 T 18-10-2018 RU84_08955 54d5657004ee2e3b3ab273871b5c919b 391 Pfam PF02684 Lipid-A-disaccharide synthetase 8 373 1.5E-106 T 18-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 RU84_08955 54d5657004ee2e3b3ab273871b5c919b 391 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 390 35.832 T 18-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 RU84_08955 54d5657004ee2e3b3ab273871b5c919b 391 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 6 386 2.1E-104 T 18-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 RU84_03090 9a334cf0825f0f91547a9796b998494d 170 Gene3D G3DSA:3.10.20.10 4 56 1.8E-37 T 18-10-2018 RU84_03090 9a334cf0825f0f91547a9796b998494d 170 Pfam PF07566 Domain of Unknown Function (DUF1543) 16 70 2.0E-19 T 18-10-2018 IPR011440 Domain of unknown function DUF1543 RU84_03090 9a334cf0825f0f91547a9796b998494d 170 Gene3D G3DSA:3.50.100.10 57 155 1.8E-37 T 18-10-2018 RU84_17045 0a6e36ca9519d180cb07b43cc7bcc6ee 278 Gene3D G3DSA:2.30.42.10 176 276 5.2E-13 T 18-10-2018 RU84_17045 0a6e36ca9519d180cb07b43cc7bcc6ee 278 Gene3D G3DSA:2.30.30.830 78 148 8.8E-8 T 18-10-2018 RU84_17045 0a6e36ca9519d180cb07b43cc7bcc6ee 278 SMART SM00228 200 269 7.0E-4 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_17045 0a6e36ca9519d180cb07b43cc7bcc6ee 278 SUPERFAMILY SSF50156 186 275 2.76E-13 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_17045 0a6e36ca9519d180cb07b43cc7bcc6ee 278 Pfam PF11356 Type II secretion system protein C 26 139 5.5E-15 T 18-10-2018 IPR024961 Type II secretion system protein C, N-terminal RU84_10455 f75057fef6e6d848d2b464fdafb86fd3 217 SUPERFAMILY SSF100950 7 212 2.23E-58 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_10455 f75057fef6e6d848d2b464fdafb86fd3 217 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 212 8.7E-82 T 18-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 RU84_10455 f75057fef6e6d848d2b464fdafb86fd3 217 SMART SM00882 9 206 9.1E-49 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_10455 f75057fef6e6d848d2b464fdafb86fd3 217 Gene3D G3DSA:3.40.1080.10 3 215 4.9E-79 T 18-10-2018 RU84_10455 f75057fef6e6d848d2b464fdafb86fd3 217 Pfam PF01144 Coenzyme A transferase 9 204 7.0E-36 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_10455 f75057fef6e6d848d2b464fdafb86fd3 217 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 47 55 - T 18-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 Hamap MF_01953 Urease subunit alpha [ureC]. 1 566 57.371 T 18-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 ProSitePatterns PS00145 Urease active site. 316 332 - T 18-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 Pfam PF01979 Amidohydrolase family 124 453 1.3E-81 T 18-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 294 311 3.4E-34 T 18-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 333 349 3.4E-34 T 18-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 400 415 3.4E-34 T 18-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 426 439 3.4E-34 T 18-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 566 4.0E-300 T 18-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 Pfam PF00449 Urease alpha-subunit, N-terminal domain 1 118 4.6E-55 T 18-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 SUPERFAMILY SSF51338 2 176 1.51E-61 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 ProSitePatterns PS01120 Urease nickel ligands signature. 126 139 - T 18-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 SUPERFAMILY SSF51338 423 476 9.5E-7 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 SUPERFAMILY SSF51556 129 566 3.14E-201 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 Gene3D G3DSA:3.20.20.140 128 566 4.7E-299 T 18-10-2018 RU84_12685 593a6b9a2bede7e69d1f49678d08dcad 566 Gene3D G3DSA:2.30.40.10 3 479 4.7E-299 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_01950 348713eb7a7b0fb82a93d28fa56cb7ac 328 Gene3D G3DSA:3.40.190.170 47 268 2.1E-15 T 18-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily RU84_01950 348713eb7a7b0fb82a93d28fa56cb7ac 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 61 196 2.0E-4 T 18-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 RU84_01950 348713eb7a7b0fb82a93d28fa56cb7ac 328 SUPERFAMILY SSF53850 44 249 1.0E-8 T 18-10-2018 RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 SUPERFAMILY SSF50129 1 181 1.83E-41 T 18-10-2018 IPR011032 GroES-like superfamily RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 Pfam PF00107 Zinc-binding dehydrogenase 184 311 2.4E-26 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 SMART SM00829 10 350 0.0018 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 143 2.9E-22 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 70 84 - T 18-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 Gene3D G3DSA:3.90.180.10 10 336 1.5E-91 T 18-10-2018 RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 SUPERFAMILY SSF51735 148 316 4.85E-37 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08775 47798b624f68bc7cf8b568e8e56c58c8 352 Gene3D G3DSA:3.40.50.720 161 297 1.5E-91 T 18-10-2018 RU84_06945 3150081af0656e048965d031e564bc65 819 Gene3D G3DSA:2.60.40.3110 263 343 7.7E-8 T 18-10-2018 RU84_06945 3150081af0656e048965d031e564bc65 819 Pfam PF00577 Outer membrane usher protein 246 723 1.5E-24 T 18-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 RU84_06945 3150081af0656e048965d031e564bc65 819 Pfam PF13953 PapC C-terminal domain 743 803 1.4E-8 T 18-10-2018 IPR025949 PapC-like, C-terminal domain RU84_06945 3150081af0656e048965d031e564bc65 819 Gene3D G3DSA:2.60.40.2610 648 738 3.8E-7 T 18-10-2018 RU84_00710 c6ad631e0ff50b0e2657486d8f907e47 729 Gene3D G3DSA:2.170.130.10 62 184 3.6E-27 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_00710 c6ad631e0ff50b0e2657486d8f907e47 729 Gene3D G3DSA:2.40.170.20 185 729 1.9E-99 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_00710 c6ad631e0ff50b0e2657486d8f907e47 729 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 174 7.4E-19 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_00710 c6ad631e0ff50b0e2657486d8f907e47 729 SUPERFAMILY SSF56935 72 729 6.41E-118 T 18-10-2018 RU84_00710 c6ad631e0ff50b0e2657486d8f907e47 729 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 729 5.7E-90 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_00710 c6ad631e0ff50b0e2657486d8f907e47 729 Pfam PF00593 TonB dependent receptor 247 728 1.7E-51 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 Pfam PF17391 Urocanase N-terminal domain 13 139 3.3E-62 T 18-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 ProSitePatterns PS01233 Urocanase signature. 443 458 - T 18-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 Gene3D G3DSA:3.40.1770.10 18 543 8.3E-265 T 18-10-2018 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 Pfam PF17392 Urocanase C-terminal domain 353 547 4.7E-92 T 18-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 PIRSF PIRSF001423 2 558 1.3E-297 T 18-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 SUPERFAMILY SSF111326 8 556 1.57E-264 T 18-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 TIGRFAM TIGR01228 hutU: urocanate hydratase 12 555 0.0 T 18-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 Gene3D G3DSA:3.40.50.10730 143 350 8.3E-265 T 18-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 Hamap MF_00577 Urocanate hydratase [hutU]. 2 557 50.638 T 18-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_00385 8f2e5f16a9bf7638a49dbb5ba6f9b544 558 Pfam PF01175 Urocanase Rossmann-like domain 142 350 6.7E-89 T 18-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SUPERFAMILY SSF52335 946 1073 3.4E-41 T 18-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SUPERFAMILY SSF52440 557 675 2.16E-49 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.0E-65 T 18-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Gene3D G3DSA:3.40.50.20 554 662 7.1E-49 T 18-10-2018 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SUPERFAMILY SSF56059 128 401 1.71E-111 T 18-10-2018 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 1.9E-36 T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.0E-74 T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1073 13.57 T 18-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.179 T 18-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SMART SM00851 961 1047 2.3E-35 T 18-10-2018 IPR011607 Methylglyoxal synthase-like domain RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Gene3D G3DSA:3.40.50.20 1 116 1.6E-51 T 18-10-2018 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 426 547 1.9E-38 T 18-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1058 0.0 T 18-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Gene3D G3DSA:3.30.470.20 665 935 2.3E-120 T 18-10-2018 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Gene3D G3DSA:3.30.470.20 119 403 1.6E-131 T 18-10-2018 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Pfam PF02142 MGS-like domain 962 1047 1.7E-21 T 18-10-2018 IPR011607 Methylglyoxal synthase-like domain RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Gene3D G3DSA:3.40.50.1380 943 1075 7.5E-37 T 18-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SUPERFAMILY SSF48108 396 554 4.05E-53 T 18-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 Gene3D G3DSA:1.10.1030.10 404 553 6.1E-48 T 18-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SMART SM01096 424 547 6.0E-71 T 18-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 18-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SUPERFAMILY SSF56059 673 933 5.83E-104 T 18-10-2018 RU84_04035 c8595469f3c179dbdce2099019a7485e 1076 SUPERFAMILY SSF52440 1 127 1.06E-50 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 Gene3D G3DSA:2.60.120.1230 17 117 9.5E-11 T 18-10-2018 RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 Gene3D G3DSA:2.60.120.1230 118 209 6.6E-6 T 18-10-2018 RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 Gene3D G3DSA:2.60.120.1230 304 397 1.3E-6 T 18-10-2018 RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 Gene3D G3DSA:2.60.120.1230 210 303 4.4E-9 T 18-10-2018 RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 SUPERFAMILY SSF55486 394 553 8.6E-13 T 18-10-2018 RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 Gene3D G3DSA:3.40.390.10 441 567 2.1E-5 T 18-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RU84_07155 927bfc0d07c82fef1c89c7a6500d10ab 593 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 420 529 6.3E-6 T 18-10-2018 RU84_02410 675274894902fa226ddb687e5c03e697 278 Gene3D G3DSA:1.10.12.10 220 278 1.1E-24 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_02410 675274894902fa226ddb687e5c03e697 278 Gene3D G3DSA:3.90.226.10 14 219 7.2E-60 T 18-10-2018 RU84_02410 675274894902fa226ddb687e5c03e697 278 Pfam PF00378 Enoyl-CoA hydratase/isomerase 20 276 1.0E-49 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_02410 675274894902fa226ddb687e5c03e697 278 SUPERFAMILY SSF52096 14 276 2.61E-66 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_02635 e0f82f7abe3e825536e664c4c160b1bb 100 Gene3D G3DSA:3.30.70.1060 1 97 1.7E-30 T 18-10-2018 RU84_02635 e0f82f7abe3e825536e664c4c160b1bb 100 SUPERFAMILY SSF54909 1 96 5.36E-26 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_02635 e0f82f7abe3e825536e664c4c160b1bb 100 Pfam PF03795 YCII-related domain 3 94 2.9E-20 T 18-10-2018 IPR005545 YCII-related RU84_14865 9b95351dfd797575e40a7f3b61c04527 347 PIRSF PIRSF005632 1 343 1.4E-198 T 18-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit RU84_14865 9b95351dfd797575e40a7f3b61c04527 347 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 329 1.1E-36 T 18-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 RU84_14865 9b95351dfd797575e40a7f3b61c04527 347 Gene3D G3DSA:3.20.20.210 1 343 4.1E-135 T 18-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RU84_14865 9b95351dfd797575e40a7f3b61c04527 347 SUPERFAMILY SSF51726 7 341 4.58E-69 T 18-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RU84_09755 fb08af057b57e54445f852f93c682786 249 Gene3D G3DSA:1.10.10.200 1 81 7.8E-35 T 18-10-2018 IPR017856 Integrase-like, N-terminal RU84_09755 fb08af057b57e54445f852f93c682786 249 SUPERFAMILY SSF75625 3 246 6.41E-93 T 18-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_09755 fb08af057b57e54445f852f93c682786 249 Gene3D G3DSA:3.30.70.980 85 236 7.0E-53 T 18-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_09755 fb08af057b57e54445f852f93c682786 249 Gene3D G3DSA:3.30.70.980 130 204 7.0E-53 T 18-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_09755 fb08af057b57e54445f852f93c682786 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 1.9E-96 T 18-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_09755 fb08af057b57e54445f852f93c682786 249 Pfam PF01709 Transcriptional regulator 5 237 4.2E-92 T 18-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_09755 fb08af057b57e54445f852f93c682786 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 35.052 T 18-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 SMART SM00346 10 99 9.7E-10 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 Gene3D G3DSA:3.30.450.40 83 257 5.2E-23 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 SUPERFAMILY SSF55781 74 256 5.76E-26 T 18-10-2018 RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 Gene3D G3DSA:1.10.10.10 9 82 7.2E-15 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 SUPERFAMILY SSF46785 10 81 6.0E-14 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 Pfam PF09339 IclR helix-turn-helix domain 12 61 2.4E-10 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_00335 7fd0d0405c2e20a602fc595591cd0819 259 Pfam PF01614 Bacterial transcriptional regulator 128 218 9.6E-9 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 Gene3D G3DSA:3.40.190.10 94 291 1.1E-51 T 18-10-2018 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 Gene3D G3DSA:1.10.10.10 1 93 1.4E-32 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 Pfam PF03466 LysR substrate binding domain 89 290 2.5E-35 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.9E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.9E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.9E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 Gene3D G3DSA:3.40.190.10 163 267 1.1E-51 T 18-10-2018 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.0E-22 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 SUPERFAMILY SSF53850 91 292 9.77E-34 T 18-10-2018 RU84_16320 86ddeb7e074eecf10295fe389d33a50d 299 SUPERFAMILY SSF46785 1 86 4.24E-24 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06815 ab838f7bf2abb750ac50fb77141b0479 302 Pfam PF00849 RNA pseudouridylate synthase 100 248 2.7E-21 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_06815 ab838f7bf2abb750ac50fb77141b0479 302 SUPERFAMILY SSF55120 85 298 1.52E-49 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_06815 ab838f7bf2abb750ac50fb77141b0479 302 Gene3D G3DSA:3.30.2350.10 85 299 2.4E-44 T 18-10-2018 RU84_06815 ab838f7bf2abb750ac50fb77141b0479 302 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 139 153 - T 18-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 Gene3D G3DSA:3.30.700.10 14 158 4.7E-21 T 18-10-2018 RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 34 124 1.2E-8 T 18-10-2018 IPR031982 Type IV minor pilin ComP RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 PRINTS PR00813 Bacterial general secretion pathway protein G signature 12 37 4.4E-11 T 18-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 PRINTS PR00813 Bacterial general secretion pathway protein G signature 48 66 4.4E-11 T 18-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 33 1.1E-7 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 SUPERFAMILY SSF54523 14 130 1.26E-18 T 18-10-2018 RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01580 0524a4f0f413d0321d4a3dccefc21707 160 Pfam PF07963 Prokaryotic N-terminal methylation motif 10 32 8.4E-7 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 SUPERFAMILY SSF50891 81 205 1.67E-35 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 Gene3D G3DSA:2.40.100.10 404 523 1.2E-38 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 SUPERFAMILY SSF160467 2 85 1.06E-8 T 18-10-2018 RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 SMART SM00796 1 192 3.6E-71 T 18-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 230 518 1.5E-71 T 18-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 Gene3D G3DSA:2.40.100.10 74 204 8.3E-47 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 Gene3D G3DSA:3.30.1360.40 4 72 2.4E-11 T 18-10-2018 RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 SMART SM00797 250 527 1.4E-89 T 18-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 SUPERFAMILY SSF50891 406 519 7.59E-16 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 251 516 3.7E-72 T 18-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B RU84_10880 c735a06fdc8437f420e3216b99c6e1aa 527 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 1 192 2.7E-56 T 18-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D RU84_05625 60304b25248c85461679115ad37b5b95 275 SUPERFAMILY SSF55920 10 268 7.98E-86 T 18-10-2018 IPR036005 Creatinase/aminopeptidase-like RU84_05625 60304b25248c85461679115ad37b5b95 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 219 1.3E-22 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_05625 60304b25248c85461679115ad37b5b95 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 82 95 1.3E-22 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_05625 60304b25248c85461679115ad37b5b95 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 176 188 1.3E-22 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_05625 60304b25248c85461679115ad37b5b95 275 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 1.3E-22 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_05625 60304b25248c85461679115ad37b5b95 275 Pfam PF00557 Metallopeptidase family M24 19 256 5.0E-49 T 18-10-2018 IPR000994 Peptidase M24 RU84_05625 60304b25248c85461679115ad37b5b95 275 Gene3D G3DSA:3.90.230.10 10 274 8.7E-103 T 18-10-2018 RU84_05625 60304b25248c85461679115ad37b5b95 275 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 182 200 - T 18-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_05625 60304b25248c85461679115ad37b5b95 275 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 12 264 8.5E-95 T 18-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_05625 60304b25248c85461679115ad37b5b95 275 Hamap MF_01974 Methionine aminopeptidase [map]. 10 265 40.527 T 18-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_11040 2b5be7508acf5e38263d214856d002be 107 Pfam PF11953 Domain of unknown function (DUF3470) 67 107 2.6E-19 T 18-10-2018 IPR022569 Ferredoxin, C-terminal RU84_11040 2b5be7508acf5e38263d214856d002be 107 Gene3D G3DSA:3.30.70.20 2 101 8.9E-33 T 18-10-2018 RU84_11040 2b5be7508acf5e38263d214856d002be 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 4.5E-18 T 18-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RU84_11040 2b5be7508acf5e38263d214856d002be 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 4.5E-18 T 18-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RU84_11040 2b5be7508acf5e38263d214856d002be 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 4.5E-18 T 18-10-2018 IPR000813 7Fe ferredoxin GO:0009055 RU84_11040 2b5be7508acf5e38263d214856d002be 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_11040 2b5be7508acf5e38263d214856d002be 107 SUPERFAMILY SSF54862 3 103 3.93E-25 T 18-10-2018 RU84_11040 2b5be7508acf5e38263d214856d002be 107 Pfam PF00037 4Fe-4S binding domain 34 55 5.6E-7 T 18-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RU84_03685 43dee724c9e2d3ddd1f725759424a1b1 153 SUPERFAMILY SSF141322 86 149 1.44E-6 T 18-10-2018 RU84_03685 43dee724c9e2d3ddd1f725759424a1b1 153 Pfam PF01957 NfeD-like C-terminal, partner-binding 9 150 3.7E-16 T 18-10-2018 IPR002810 NfeD-like, C-terminal domain RU84_03685 43dee724c9e2d3ddd1f725759424a1b1 153 Gene3D G3DSA:2.40.50.140 77 153 1.1E-9 T 18-10-2018 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 PIRSF PIRSF000102 1 326 1.9E-63 T 18-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 159 322 1.3E-32 T 18-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 Gene3D G3DSA:3.90.110.10 157 328 4.9E-61 T 18-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 SUPERFAMILY SSF51735 3 157 6.69E-45 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 2 321 6.5E-145 T 18-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 327 56.726 T 18-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 SUPERFAMILY SSF56327 159 327 1.7E-58 T 18-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 154 7.2E-36 T 18-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_02310 057fc6c2fe918fefde1133b8ad9ac4af 328 Gene3D G3DSA:3.40.50.720 1 156 6.0E-58 T 18-10-2018 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 SUPERFAMILY SSF89095 306 413 3.79E-33 T 18-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 154 168 - T 18-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 Gene3D G3DSA:1.10.150.380 306 427 7.4E-34 T 18-10-2018 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 Gene3D G3DSA:1.10.10.410 429 489 9.6E-26 T 18-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 Pfam PF02637 GatB domain 337 488 3.6E-52 T 18-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 SUPERFAMILY SSF55931 14 305 1.5E-115 T 18-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 13 488 3.3E-164 T 18-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 Pfam PF02934 GatB/GatE catalytic domain 15 298 3.7E-108 T 18-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 SMART SM00845 337 488 3.3E-80 T 18-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 RU84_03550 0c2881ee6fc003cd97f915c277e322a1 489 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 12 489 37.674 T 18-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 RU84_01920 dfc50300863cef29271967e461180b5e 337 Pfam PF01544 CorA-like Mg2+ transporter protein 27 332 1.3E-54 T 18-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RU84_01920 dfc50300863cef29271967e461180b5e 337 SUPERFAMILY SSF143865 2 274 1.03E-35 T 18-10-2018 RU84_01920 dfc50300863cef29271967e461180b5e 337 Gene3D G3DSA:1.20.58.340 261 337 1.6E-15 T 18-10-2018 RU84_01920 dfc50300863cef29271967e461180b5e 337 Gene3D G3DSA:3.30.460.20 2 138 4.1E-5 T 18-10-2018 RU84_01920 dfc50300863cef29271967e461180b5e 337 SUPERFAMILY SSF144083 272 335 4.97E-14 T 18-10-2018 RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 169 197 - T 18-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 Pfam PF00482 Type II secretion system (T2SS), protein F 74 197 1.8E-31 T 18-10-2018 IPR018076 Type II secretion system F domain RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 Pfam PF00482 Type II secretion system (T2SS), protein F 279 400 2.8E-28 T 18-10-2018 IPR018076 Type II secretion system F domain RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 Gene3D G3DSA:1.20.81.30 261 371 9.2E-28 T 18-10-2018 RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 Gene3D G3DSA:1.20.81.30 60 176 4.6E-31 T 18-10-2018 RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 3.0E-18 T 18-10-2018 IPR003004 GspF/PilC family RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 373 387 3.0E-18 T 18-10-2018 IPR003004 GspF/PilC family RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 389 408 3.0E-18 T 18-10-2018 IPR003004 GspF/PilC family RU84_16765 bb323d7976e101e3fb17900c8dcfe009 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 169 197 3.0E-18 T 18-10-2018 IPR003004 GspF/PilC family RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 SMART SM00062 41 265 2.1E-13 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 SUPERFAMILY SSF53850 38 262 3.08E-44 T 18-10-2018 RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 Gene3D G3DSA:1.10.8.450 252 286 6.4E-54 T 18-10-2018 RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 Gene3D G3DSA:3.40.190.10 43 251 6.4E-54 T 18-10-2018 RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 Gene3D G3DSA:3.40.190.10 119 216 6.4E-54 T 18-10-2018 RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 40 268 2.8E-20 T 18-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 RU84_10035 edff9bc1242b6b0edabfff786723acd0 340 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 42 338 1.1E-121 T 18-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 RU84_09265 4d4fc27c40054d353297375fc1146ad4 594 Gene3D G3DSA:3.10.105.10 338 559 9.9E-33 T 18-10-2018 RU84_09265 4d4fc27c40054d353297375fc1146ad4 594 PIRSF PIRSF002741 2 591 2.5E-63 T 18-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RU84_09265 4d4fc27c40054d353297375fc1146ad4 594 Gene3D G3DSA:3.40.190.10 218 337 9.3E-22 T 18-10-2018 RU84_09265 4d4fc27c40054d353297375fc1146ad4 594 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 79 511 1.1E-76 T 18-10-2018 IPR000914 Solute-binding protein family 5 domain RU84_09265 4d4fc27c40054d353297375fc1146ad4 594 SUPERFAMILY SSF53850 29 589 3.8E-90 T 18-10-2018 RU84_09265 4d4fc27c40054d353297375fc1146ad4 594 Gene3D G3DSA:3.90.76.10 44 217 5.0E-34 T 18-10-2018 RU84_16755 262f554f624f18dfb5aa7c64ff57bc34 264 ProSitePatterns PS00171 Triosephosphate isomerase active site. 177 187 - T 18-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_16755 262f554f624f18dfb5aa7c64ff57bc34 264 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 6 259 56.857 T 18-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_16755 262f554f624f18dfb5aa7c64ff57bc34 264 Gene3D G3DSA:3.20.20.70 5 264 6.8E-86 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_16755 262f554f624f18dfb5aa7c64ff57bc34 264 Pfam PF00121 Triosephosphate isomerase 9 257 7.9E-81 T 18-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_16755 262f554f624f18dfb5aa7c64ff57bc34 264 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 250 5.3E-52 T 18-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_16755 262f554f624f18dfb5aa7c64ff57bc34 264 SUPERFAMILY SSF51351 7 260 6.81E-80 T 18-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 Gene3D G3DSA:3.40.50.300 1 273 3.0E-42 T 18-10-2018 RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 SUPERFAMILY SSF52540 343 520 1.14E-28 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 Pfam PF00005 ABC transporter 357 484 2.1E-12 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 SUPERFAMILY SSF52540 9 227 2.67E-33 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 SMART SM00382 364 527 0.16 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 SMART SM00382 31 217 0.39 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 Gene3D G3DSA:3.40.50.300 303 527 4.6E-31 T 18-10-2018 RU84_07060 c3327d48a428b65a98cf289878db4f8d 528 Pfam PF00005 ABC transporter 23 174 2.4E-16 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 Gene3D G3DSA:3.50.50.60 6 392 1.9E-62 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 392 3.3E-78 T 18-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 Gene3D G3DSA:1.10.8.260 271 324 1.9E-62 T 18-10-2018 IPR023166 HI0933-like insert domain superfamily RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 SUPERFAMILY SSF51905 1 396 4.87E-37 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 SUPERFAMILY SSF160996 204 341 2.35E-16 T 18-10-2018 RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 26 400 1.2E-186 T 18-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 Gene3D G3DSA:2.40.30.10 192 341 1.9E-62 T 18-10-2018 RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 PRINTS PR00419 Adrenodoxin reductase family signature 5 27 2.3E-6 T 18-10-2018 RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 PRINTS PR00419 Adrenodoxin reductase family signature 28 41 2.3E-6 T 18-10-2018 RU84_16480 d23c8ec0af4b841f46c934ef29f4cf45 401 Pfam PF03486 HI0933-like protein 5 393 5.3E-83 T 18-10-2018 RU84_11365 c5b4fede82d9090597e0b361a648dedf 195 Gene3D G3DSA:3.40.50.150 6 195 5.6E-51 T 18-10-2018 RU84_11365 c5b4fede82d9090597e0b361a648dedf 195 Pfam PF01596 O-methyltransferase 32 161 5.0E-22 T 18-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 RU84_11365 c5b4fede82d9090597e0b361a648dedf 195 SUPERFAMILY SSF53335 29 194 9.29E-37 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 8 703 1.6E-259 T 18-10-2018 IPR017750 ATPase, type I secretion system RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 Pfam PF00664 ABC transporter transmembrane region 161 426 2.3E-32 T 18-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 Pfam PF00005 ABC transporter 495 640 1.9E-30 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 SUPERFAMILY SSF52540 464 701 1.13E-61 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 Gene3D G3DSA:3.90.70.10 4 127 2.0E-11 T 18-10-2018 RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 Gene3D G3DSA:1.20.1560.10 145 456 2.6E-63 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 SMART SM00382 500 686 3.5E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 SUPERFAMILY SSF90123 146 456 7.59E-63 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 Gene3D G3DSA:3.40.50.300 465 712 2.0E-69 T 18-10-2018 RU84_11075 66b00e85c9475d79a5bfc9d135339bee 713 ProSitePatterns PS00211 ABC transporters family signature. 612 626 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05115 b3f034bd290842911d4ce6c72bfc51c1 343 Gene3D G3DSA:3.40.190.10 29 309 2.1E-50 T 18-10-2018 RU84_05115 b3f034bd290842911d4ce6c72bfc51c1 343 SUPERFAMILY SSF53850 28 337 2.61E-60 T 18-10-2018 RU84_05115 b3f034bd290842911d4ce6c72bfc51c1 343 Gene3D G3DSA:3.40.190.10 115 281 2.1E-50 T 18-10-2018 RU84_05115 b3f034bd290842911d4ce6c72bfc51c1 343 Pfam PF12849 PBP superfamily domain 20 307 2.6E-41 T 18-10-2018 IPR024370 PBP domain RU84_15665 e5e1ff45c87bc926dee167c93e2930b0 382 Gene3D G3DSA:1.10.443.10 190 370 3.5E-16 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_15665 e5e1ff45c87bc926dee167c93e2930b0 382 SUPERFAMILY SSF56349 69 363 1.18E-26 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_15665 e5e1ff45c87bc926dee167c93e2930b0 382 Pfam PF00589 Phage integrase family 218 364 3.2E-11 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_05325 105f3002d9efae2b2f750b654a68bbe7 315 Gene3D G3DSA:1.10.3470.10 2 314 4.8E-40 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_05325 105f3002d9efae2b2f750b654a68bbe7 315 Pfam PF01032 FecCD transport family 31 310 6.1E-38 T 18-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RU84_05325 105f3002d9efae2b2f750b654a68bbe7 315 SUPERFAMILY SSF81345 3 310 8.63E-44 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 SUPERFAMILY SSF54897 39 113 2.78E-8 T 18-10-2018 RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 150 161 - T 18-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 337 347 - T 18-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 Gene3D G3DSA:3.30.70.80 34 113 3.5E-13 T 18-10-2018 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 187 197 - T 18-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 Gene3D G3DSA:3.40.50.200 116 392 8.7E-90 T 18-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 SUPERFAMILY SSF52743 117 374 1.57E-73 T 18-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 Pfam PF00082 Subtilase family 146 379 8.6E-33 T 18-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 Pfam PF05922 Peptidase inhibitor I9 43 113 2.5E-5 T 18-10-2018 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 Reactome: R-HSA-381426|Reactome: R-HSA-8866427|Reactome: R-HSA-8957275|Reactome: R-HSA-8964038 RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 PRINTS PR00723 Subtilisin serine protease family (S8) signature 145 164 1.3E-17 T 18-10-2018 IPR015500 Peptidase S8, subtilisin-related RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 PRINTS PR00723 Subtilisin serine protease family (S8) signature 183 196 1.3E-17 T 18-10-2018 IPR015500 Peptidase S8, subtilisin-related RU84_07575 45e157051e3e1da67d98c1ca042eab60 393 PRINTS PR00723 Subtilisin serine protease family (S8) signature 336 352 1.3E-17 T 18-10-2018 IPR015500 Peptidase S8, subtilisin-related RU84_04725 38b15b3a18e5e4e797498fad4b4f0f50 150 SUPERFAMILY SSF54637 3 134 3.34E-39 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_04725 38b15b3a18e5e4e797498fad4b4f0f50 150 Gene3D G3DSA:3.10.129.10 2 138 4.7E-33 T 18-10-2018 RU84_04725 38b15b3a18e5e4e797498fad4b4f0f50 150 Pfam PF13279 Thioesterase-like superfamily 11 130 9.2E-11 T 18-10-2018 RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 Gene3D G3DSA:2.60.40.10 159 244 5.2E-19 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 105 122 - T 18-10-2018 IPR018046 Pili assembly chaperone, conserved site RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 SUPERFAMILY SSF49584 159 243 3.01E-20 T 18-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 179 240 3.3E-15 T 18-10-2018 IPR016148 Pili assembly chaperone, C-terminal RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 SUPERFAMILY SSF49354 23 157 1.76E-40 T 18-10-2018 IPR008962 PapD-like superfamily RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 Gene3D G3DSA:2.60.40.10 28 158 8.0E-42 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 PRINTS PR00969 Pili chaperone signature 27 36 5.5E-36 T 18-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 PRINTS PR00969 Pili chaperone signature 174 189 5.5E-36 T 18-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 PRINTS PR00969 Pili chaperone signature 106 123 5.5E-36 T 18-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 PRINTS PR00969 Pili chaperone signature 76 97 5.5E-36 T 18-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 PRINTS PR00969 Pili chaperone signature 139 154 5.5E-36 T 18-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 RU84_09675 e61aef30c92890fd0cb65018abfd07c7 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 157 1.5E-42 T 18-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 RU84_07515 a37aab130cf03313c63c43dba796122a 160 Hamap MF_01114 Regulatory protein RecX [recX]. 17 160 13.133 T 18-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RU84_07515 a37aab130cf03313c63c43dba796122a 160 Gene3D G3DSA:1.10.10.10 67 110 2.7E-10 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07515 a37aab130cf03313c63c43dba796122a 160 Gene3D G3DSA:1.10.10.10 21 65 1.5E-5 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07515 a37aab130cf03313c63c43dba796122a 160 Gene3D G3DSA:1.10.10.10 111 158 1.1E-15 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07515 a37aab130cf03313c63c43dba796122a 160 Pfam PF02631 RecX family 47 157 2.2E-28 T 18-10-2018 IPR003783 Regulatory protein RecX GO:0006282 RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 Gene3D G3DSA:3.30.300.70 2 58 1.3E-5 T 18-10-2018 IPR035956 RimP, N-terminal domain superfamily RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 Gene3D G3DSA:3.30.300.70 59 100 7.0E-11 T 18-10-2018 IPR035956 RimP, N-terminal domain superfamily RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 Pfam PF02576 RimP N-terminal domain 13 103 1.0E-20 T 18-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 SUPERFAMILY SSF75420 4 103 7.19E-20 T 18-10-2018 IPR035956 RimP, N-terminal domain superfamily RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 Pfam PF17384 RimP C-terminal SH3 domain 107 172 1.3E-12 T 18-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 SUPERFAMILY SSF74942 104 173 5.1E-11 T 18-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily RU84_16730 63af3c5a184edac3eed67dfff9c94907 174 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 174 21.799 T 18-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 PIRSF PIRSF036643 874 926 23.0 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 PIRSF PIRSF036643 5 738 4.8E-152 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Pfam PF01568 Molydopterin dinucleotide binding domain 614 725 1.6E-28 T 18-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 21 39 - T 18-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Gene3D G3DSA:3.40.50.740 91 594 4.7E-171 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Gene3D G3DSA:2.40.40.20 611 731 1.8E-38 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Pfam PF04324 BFD-like [2Fe-2S] binding domain 869 918 9.0E-12 T 18-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Gene3D G3DSA:1.10.10.1100 869 925 1.9E-5 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Gene3D G3DSA:2.20.25.90 16 71 1.3E-17 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Pfam PF00384 Molybdopterin oxidoreductase 90 504 8.3E-83 T 18-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Gene3D G3DSA:3.40.228.10 157 598 4.7E-171 T 18-10-2018 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 SMART SM00926 16 73 1.5E-19 T 18-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 17 70 2.1E-19 T 18-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 SUPERFAMILY SSF50692 604 745 1.13E-41 T 18-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily RU84_07305 6c5fe6e9a607bece20ec4488d12eefd2 926 SUPERFAMILY SSF53706 17 616 4.71E-184 T 18-10-2018 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 Gene3D G3DSA:1.10.285.10 385 447 3.2E-11 T 18-10-2018 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 SMART SM00839 203 445 3.2E-89 T 18-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 201 445 2.0E-87 T 18-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 Gene3D G3DSA:3.40.50.720 208 372 1.9E-173 T 18-10-2018 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 121 134 - T 18-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 371 382 2.4E-31 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 113 127 2.4E-31 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 192 214 2.4E-31 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 234 254 2.4E-31 T 18-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 SUPERFAMILY SSF51735 201 447 3.16E-78 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 SUPERFAMILY SSF53223 6 195 5.76E-74 T 18-10-2018 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 56 183 1.4E-49 T 18-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 Gene3D G3DSA:1.10.285.10 7 383 1.9E-173 T 18-10-2018 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 Gene3D G3DSA:3.40.50.10860 54 189 1.9E-173 T 18-10-2018 RU84_12625 7afec5e7ff5c26c52d1d5231767be307 447 PIRSF PIRSF000185 21 447 6.5E-116 T 18-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 SUPERFAMILY SSF50249 3 123 9.42E-51 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.302 T 18-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 Gene3D G3DSA:2.40.50.140 1 124 3.5E-62 T 18-10-2018 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 2.0E-68 T 18-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 3.3E-42 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.8E-59 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.8E-59 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.8E-59 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.8E-59 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.8E-59 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.8E-59 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_13885 0d15f5dd20f577926cd1a507a3336ced 124 PIRSF PIRSF002133 1 124 9.7E-53 T 18-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_07655 e5f7dcb435a613f78d7f67360936a76a 433 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 2.0E-140 T 18-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RU84_07655 e5f7dcb435a613f78d7f67360936a76a 433 Pfam PF05525 Branched-chain amino acid transport protein 8 428 3.2E-142 T 18-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 638 31.296 T 18-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Pfam PF00183 Hsp90 protein 235 637 8.0E-126 T 18-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Gene3D G3DSA:1.20.120.790 509 639 1.1E-41 T 18-10-2018 IPR037196 HSP90, C-terminal domain RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Gene3D G3DSA:3.30.565.10 1 229 5.7E-78 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 SUPERFAMILY SSF54211 245 502 3.11E-94 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 SUPERFAMILY SSF55874 6 217 2.39E-65 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Gene3D G3DSA:3.40.50.11260 416 503 3.1E-31 T 18-10-2018 RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 SMART SM00387 29 186 9.8E-5 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 7 27 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 174 191 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 192 210 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 95 112 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 77 94 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 122 144 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PRINTS PR00775 90kDa heat shock protein signature 28 50 9.5E-63 T 18-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Gene3D G3DSA:3.30.230.80 244 415 9.8E-67 T 18-10-2018 RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 PIRSF PIRSF002583 1 639 1.6E-212 T 18-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 SUPERFAMILY SSF110942 528 638 1.44E-33 T 18-10-2018 IPR037196 HSP90, C-terminal domain RU84_16915 94e0ed8aead37c1ccd521db1a98d5541 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 184 2.4E-12 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-18 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 27.627 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 18-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 Gene3D G3DSA:2.40.50.100 21 85 6.4E-30 T 18-10-2018 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.4E-37 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.4E-37 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.4E-37 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 6.4E-39 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.2E-38 T 18-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_03825 dbec8da8eaa414a3cfd754fc53e0b7ce 85 SUPERFAMILY SSF110324 2 80 2.02E-33 T 18-10-2018 RU84_13100 394c308240e748d6415ac59f03517e4b 540 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 508 7.2E-167 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_13100 394c308240e748d6415ac59f03517e4b 540 ProSitePatterns PS01303 BCCT family of transporters signature. 322 331 - T 18-10-2018 IPR018093 BCCT transporter, conserved site RU84_13100 394c308240e748d6415ac59f03517e4b 540 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 508 3.4E-146 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_11810 c15692b638d126794d2e5ff27383fb81 256 Pfam PF12680 SnoaL-like domain 13 102 4.1E-13 T 18-10-2018 IPR037401 SnoaL-like domain RU84_11810 c15692b638d126794d2e5ff27383fb81 256 SUPERFAMILY SSF54427 5 104 4.77E-22 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_11810 c15692b638d126794d2e5ff27383fb81 256 SUPERFAMILY SSF54427 133 240 5.06E-16 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_11810 c15692b638d126794d2e5ff27383fb81 256 Gene3D G3DSA:3.10.450.50 1 117 4.1E-29 T 18-10-2018 RU84_11810 c15692b638d126794d2e5ff27383fb81 256 Gene3D G3DSA:3.10.450.50 129 255 7.0E-23 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Gene3D G3DSA:2.40.50.140 187 268 2.0E-29 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SUPERFAMILY SSF50249 189 277 2.69E-28 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SUPERFAMILY SSF50249 342 440 8.58E-24 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SUPERFAMILY SSF50249 255 363 3.58E-27 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Gene3D G3DSA:2.40.50.140 358 444 3.1E-25 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Gene3D G3DSA:2.40.50.140 269 357 1.5E-28 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.6E-210 T 18-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Pfam PF00575 S1 RNA binding domain 189 260 2.4E-22 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Pfam PF00575 S1 RNA binding domain 102 171 4.6E-14 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Pfam PF00575 S1 RNA binding domain 18 86 3.6E-8 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Pfam PF00575 S1 RNA binding domain 361 434 2.5E-20 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Pfam PF00575 S1 RNA binding domain 275 347 2.6E-21 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Pfam PF00575 S1 RNA binding domain 450 520 1.9E-14 T 18-10-2018 IPR003029 S1 domain GO:0003676 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SMART SM00316 190 260 5.8E-30 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SMART SM00316 449 520 6.7E-20 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SMART SM00316 19 87 3.8E-8 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SMART SM00316 275 347 1.9E-25 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SMART SM00316 103 171 3.8E-11 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SMART SM00316 362 434 8.0E-22 T 18-10-2018 IPR022967 RNA-binding domain, S1 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SUPERFAMILY SSF50249 103 184 8.58E-16 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Gene3D G3DSA:2.40.50.140 5 99 3.6E-17 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Gene3D G3DSA:2.40.50.140 100 183 6.2E-9 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 Gene3D G3DSA:2.40.50.140 445 528 4.4E-20 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PIRSF PIRSF002111 1 534 1.6E-212 T 18-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.6E-86 T 18-10-2018 RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SUPERFAMILY SSF50249 2 112 4.77E-21 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_09335 8d5498319ea47647ee6a1c94890eacd2 557 SUPERFAMILY SSF50249 429 533 2.24E-21 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_07715 c3d010bceb57074bcebd34af3fdf98b0 198 Pfam PF00881 Nitroreductase family 8 176 1.2E-15 T 18-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RU84_07715 c3d010bceb57074bcebd34af3fdf98b0 198 Gene3D G3DSA:3.40.109.10 1 198 5.9E-82 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_07715 c3d010bceb57074bcebd34af3fdf98b0 198 SUPERFAMILY SSF55469 4 197 2.49E-67 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 18-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 3 180 9.5E-72 T 18-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 Pfam PF01227 GTP cyclohydrolase I 4 180 1.2E-72 T 18-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 35.201 T 18-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 Gene3D G3DSA:1.10.286.10 1 49 6.2E-17 T 18-10-2018 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 18-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 SUPERFAMILY SSF55620 2 181 1.56E-73 T 18-10-2018 RU84_05430 05b9448640ac9e729835e1c8bddc59fb 184 Gene3D G3DSA:3.30.1130.10 51 183 3.8E-59 T 18-10-2018 RU84_12380 07a6772135fbb2d07d12e3b3337c4272 221 Gene3D G3DSA:1.20.890.90 189 221 3.1E-5 T 18-10-2018 RU84_12380 07a6772135fbb2d07d12e3b3337c4272 221 Pfam PF10281 Putative stress-responsive nuclear envelope protein 186 217 1.6E-7 T 18-10-2018 IPR018803 Putative stress-responsive protein RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 Gene3D G3DSA:3.40.50.1820 2 262 1.4E-57 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 205 219 7.1E-8 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 7.1E-8 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 7.1E-8 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 PRINTS PR00111 Alpha/beta hydrolase fold signature 48 63 7.1E-8 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 SUPERFAMILY SSF53474 4 259 2.89E-55 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_10635 45bc9764239e7bb05a62b90629bd2066 263 Pfam PF12697 Alpha/beta hydrolase family 25 253 8.4E-23 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_18565 492f224f9376d52681e0e4d43cc35ee8 646 SUPERFAMILY SSF52540 1 637 2.61E-34 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18565 492f224f9376d52681e0e4d43cc35ee8 646 Gene3D G3DSA:3.40.50.300 408 640 8.5E-28 T 18-10-2018 RU84_18565 492f224f9376d52681e0e4d43cc35ee8 646 Gene3D G3DSA:3.40.50.300 1 336 1.9E-27 T 18-10-2018 RU84_18565 492f224f9376d52681e0e4d43cc35ee8 646 Pfam PF13476 AAA domain 7 278 4.7E-19 T 18-10-2018 IPR038729 Rad50/SbcC-type AAA domain RU84_08705 9786472123afa430fb60c4ef5bb6803a 81 SUPERFAMILY SSF54862 7 74 3.26E-14 T 18-10-2018 RU84_08705 9786472123afa430fb60c4ef5bb6803a 81 Gene3D G3DSA:3.30.70.20 15 76 1.4E-16 T 18-10-2018 RU84_08705 9786472123afa430fb60c4ef5bb6803a 81 Pfam PF12838 4Fe-4S dicluster domain 23 71 1.8E-8 T 18-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RU84_18410 e625600f94eca375c23cab4d07b06f23 130 Gene3D G3DSA:3.30.230.10 1 121 2.5E-34 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_18410 e625600f94eca375c23cab4d07b06f23 130 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 117 16.132 T 18-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RU84_18410 e625600f94eca375c23cab4d07b06f23 130 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 57 71 - T 18-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 RU84_18410 e625600f94eca375c23cab4d07b06f23 130 Pfam PF00825 Ribonuclease P 7 114 1.3E-24 T 18-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RU84_18410 e625600f94eca375c23cab4d07b06f23 130 SUPERFAMILY SSF54211 5 120 1.74E-25 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_18410 e625600f94eca375c23cab4d07b06f23 130 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 11 117 6.0E-21 T 18-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RU84_18410 e625600f94eca375c23cab4d07b06f23 130 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 109 6.0E-37 T 18-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 9.2E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 9.2E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 9.2E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 9.2E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 9.2E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 9.2E-26 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 SUPERFAMILY SSF51735 8 252 1.7E-73 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.9E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.9E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.9E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_13005 b4adbedecabc129903634b1f1c037b80 254 Gene3D G3DSA:3.40.50.720 2 253 1.0E-70 T 18-10-2018 RU84_13005 b4adbedecabc129903634b1f1c037b80 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 251 6.5E-59 T 18-10-2018 RU84_13005 b4adbedecabc129903634b1f1c037b80 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_11440 12dccce8ed45d841b826ffbeac4384ff 162 Pfam PF02464 Competence-damaged protein 3 145 3.6E-21 T 18-10-2018 IPR008136 CinA, C-terminal RU84_11440 12dccce8ed45d841b826ffbeac4384ff 162 SUPERFAMILY SSF142433 2 151 1.7E-25 T 18-10-2018 IPR036653 CinA-like, C-terminal RU84_11440 12dccce8ed45d841b826ffbeac4384ff 162 Gene3D G3DSA:3.90.950.20 1 158 3.0E-28 T 18-10-2018 IPR036653 CinA-like, C-terminal RU84_05305 fd332a40a0061ba36616bab828b9a4cf 286 Pfam PF08021 Siderophore-interacting FAD-binding domain 69 125 6.1E-13 T 18-10-2018 IPR013113 FAD-binding 9, siderophore-interacting RU84_05305 fd332a40a0061ba36616bab828b9a4cf 286 Gene3D G3DSA:3.40.50.80 131 273 5.2E-24 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_05305 fd332a40a0061ba36616bab828b9a4cf 286 Gene3D G3DSA:2.40.30.10 22 126 5.3E-15 T 18-10-2018 RU84_05305 fd332a40a0061ba36616bab828b9a4cf 286 Pfam PF04954 Siderophore-interacting protein 136 252 1.1E-21 T 18-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 SUPERFAMILY SSF52540 416 886 8.35E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 Gene3D G3DSA:3.40.50.10930 2 108 6.0E-11 T 18-10-2018 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 Gene3D G3DSA:3.40.50.10930 200 387 8.0E-34 T 18-10-2018 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 PIRSF PIRSF000980 2 1198 4.1E-157 T 18-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 Gene3D G3DSA:3.40.50.300 396 878 3.6E-115 T 18-10-2018 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 SUPERFAMILY SSF52540 3 407 3.08E-67 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 Gene3D G3DSA:1.10.486.10 510 730 3.6E-115 T 18-10-2018 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 3 877 6.8E-193 T 18-10-2018 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 2 1211 14.409 T 18-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 RU84_16625 d6ee894626fa8e5a07269ea511a7fb1a 1211 SUPERFAMILY SSF52980 897 1208 2.36E-44 T 18-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RU84_16075 a216c8b098c9eea72b4dc04eb9012f74 351 Pfam PF13387 Domain of unknown function (DUF4105) 137 289 1.1E-44 T 18-10-2018 IPR025178 Domain of unknown function DUF4105 RU84_07185 b8f38249ae1d1bd7ce8b90a1c98e5a50 414 Pfam PF10282 Lactonase, 7-bladed beta-propeller 58 413 1.4E-87 T 18-10-2018 IPR019405 Lactonase, 7-bladed beta propeller RU84_07185 b8f38249ae1d1bd7ce8b90a1c98e5a50 414 Gene3D G3DSA:2.130.10.10 50 414 1.9E-96 T 18-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RU84_07185 b8f38249ae1d1bd7ce8b90a1c98e5a50 414 SUPERFAMILY SSF51004 99 395 4.45E-44 T 18-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily RU84_09350 b9e3d0e6a1bdd8035e4818db9e350757 166 Pfam PF14437 MafB19-like deaminase 6 152 1.5E-31 T 18-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RU84_09350 b9e3d0e6a1bdd8035e4818db9e350757 166 Gene3D G3DSA:3.40.140.10 1 166 3.1E-57 T 18-10-2018 RU84_09350 b9e3d0e6a1bdd8035e4818db9e350757 166 SUPERFAMILY SSF53927 5 156 2.06E-51 T 18-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RU84_09350 b9e3d0e6a1bdd8035e4818db9e350757 166 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 10 152 41.028 T 18-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 RU84_09350 b9e3d0e6a1bdd8035e4818db9e350757 166 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 93 - T 18-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 RU84_00395 4f5c232bc715cbda1417ace8929d0266 470 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_00395 4f5c232bc715cbda1417ace8929d0266 470 PIRSF PIRSF006060 1 467 2.3E-69 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_00395 4f5c232bc715cbda1417ace8929d0266 470 Gene3D G3DSA:1.20.1740.10 6 465 1.0E-66 T 18-10-2018 RU84_00395 4f5c232bc715cbda1417ace8929d0266 470 Pfam PF00324 Amino acid permease 15 450 2.3E-106 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_18750 d16a0f211371b9901846c1272f08ced1 117 Gene3D G3DSA:1.10.10.60 9 101 6.4E-11 T 18-10-2018 RU84_18750 d16a0f211371b9901846c1272f08ced1 117 Pfam PF01527 Transposase 4 77 1.1E-13 T 18-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 RU84_18750 d16a0f211371b9901846c1272f08ced1 117 SUPERFAMILY SSF46689 5 92 4.12E-15 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_00205 ef0590d8f674e1f7614d9b8e8c7ac185 396 Pfam PF07690 Major Facilitator Superfamily 14 346 3.1E-31 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_00205 ef0590d8f674e1f7614d9b8e8c7ac185 396 SUPERFAMILY SSF103473 8 383 3.53E-52 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_00205 ef0590d8f674e1f7614d9b8e8c7ac185 396 Gene3D G3DSA:1.20.1250.20 1 382 8.3E-41 T 18-10-2018 RU84_10290 be8e70fff603c52718581b6639914bd5 203 Pfam PF00717 Peptidase S24-like 116 184 2.2E-11 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_10290 be8e70fff603c52718581b6639914bd5 203 SUPERFAMILY SSF51306 72 198 5.06E-30 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_10290 be8e70fff603c52718581b6639914bd5 203 Gene3D G3DSA:2.10.109.10 84 202 5.2E-39 T 18-10-2018 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 Pfam PF00970 Oxidoreductase FAD-binding domain 107 198 3.0E-18 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 SUPERFAMILY SSF52343 187 332 2.23E-33 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_11295 89df43e6a3c696962c0dad8874716f88 353 Pfam PF00175 Oxidoreductase NAD-binding domain 210 314 1.7E-15 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 Gene3D G3DSA:2.40.30.10 104 199 3.7E-27 T 18-10-2018 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 SUPERFAMILY SSF63380 105 199 1.56E-26 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_11295 89df43e6a3c696962c0dad8874716f88 353 Gene3D G3DSA:3.40.50.80 200 339 6.4E-28 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_11295 89df43e6a3c696962c0dad8874716f88 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 209 228 8.2E-32 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 193 202 8.2E-32 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 302 310 8.2E-32 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 149 156 8.2E-32 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 144 8.2E-32 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 PRINTS PR00410 Phenol hydroxylase reductase family signature 234 243 8.2E-32 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 6 82 1.0E-17 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 SUPERFAMILY SSF54292 2 89 1.23E-29 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_11295 89df43e6a3c696962c0dad8874716f88 353 Gene3D G3DSA:3.10.20.30 1 94 1.7E-26 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_13155 0446d70303159e6aff88c19b3d012af5 296 Gene3D G3DSA:1.10.10.10 1 88 1.1E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_13155 0446d70303159e6aff88c19b3d012af5 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 7.6E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_13155 0446d70303159e6aff88c19b3d012af5 296 Gene3D G3DSA:3.40.190.290 91 293 2.7E-33 T 18-10-2018 RU84_13155 0446d70303159e6aff88c19b3d012af5 296 SUPERFAMILY SSF53850 86 293 8.14E-27 T 18-10-2018 RU84_13155 0446d70303159e6aff88c19b3d012af5 296 Pfam PF03466 LysR substrate binding domain 89 291 5.0E-27 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_13155 0446d70303159e6aff88c19b3d012af5 296 SUPERFAMILY SSF46785 1 83 2.95E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10040 fddc68473b74a158d21d5c3813753a68 394 Gene3D G3DSA:2.40.128.130 212 359 2.5E-5 T 18-10-2018 IPR036709 Autotransporter beta-domain superfamily RU84_10040 fddc68473b74a158d21d5c3813753a68 394 SUPERFAMILY SSF56935 32 315 8.97E-8 T 18-10-2018 RU84_02240 2582d6cb20f043abb4b706b824b48321 213 SUPERFAMILY SSF56529 3 200 4.58E-60 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_02240 2582d6cb20f043abb4b706b824b48321 213 Gene3D G3DSA:3.90.850.10 1 205 8.4E-62 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_02240 2582d6cb20f043abb4b706b824b48321 213 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 7 200 7.9E-44 T 18-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RU84_06550 5bc11dc3eadfeb332f9752d5f40d171e 292 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 17.191 T 18-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RU84_06550 5bc11dc3eadfeb332f9752d5f40d171e 292 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 18-10-2018 IPR030470 UbiA prenyltransferase conserved site RU84_06550 5bc11dc3eadfeb332f9752d5f40d171e 292 Gene3D G3DSA:1.10.357.140 13 164 4.5E-21 T 18-10-2018 RU84_06550 5bc11dc3eadfeb332f9752d5f40d171e 292 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 277 8.8E-85 T 18-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 RU84_06550 5bc11dc3eadfeb332f9752d5f40d171e 292 Pfam PF01040 UbiA prenyltransferase family 18 267 7.3E-58 T 18-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 RU84_03860 016ec1ac7bfe617702231d5e655cf6b5 186 SUPERFAMILY SSF52218 5 184 1.06E-40 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_03860 016ec1ac7bfe617702231d5e655cf6b5 186 Gene3D G3DSA:3.40.50.360 1 185 1.2E-55 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_03860 016ec1ac7bfe617702231d5e655cf6b5 186 Pfam PF12724 Flavodoxin domain 8 77 2.6E-8 T 18-10-2018 IPR026816 Flavodoxin domain RU84_11065 e537aed922e2cccb008f98f54dabb14c 199 SUPERFAMILY SSF54211 4 123 1.9E-39 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_11065 e537aed922e2cccb008f98f54dabb14c 199 Pfam PF09186 Domain of unknown function (DUF1949) 133 187 4.1E-5 T 18-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal RU84_11065 e537aed922e2cccb008f98f54dabb14c 199 SUPERFAMILY SSF54980 128 194 5.18E-8 T 18-10-2018 IPR035647 EF-G domain III/V-like RU84_11065 e537aed922e2cccb008f98f54dabb14c 199 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 2.1E-29 T 18-10-2018 IPR001498 Impact, N-terminal RU84_11065 e537aed922e2cccb008f98f54dabb14c 199 Gene3D G3DSA:3.30.230.30 1 125 1.0E-44 T 18-10-2018 IPR036956 Impact, N-terminal domain superfamily RU84_11065 e537aed922e2cccb008f98f54dabb14c 199 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 71 100 - T 18-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 ProSitePatterns PS00483 Dihydroorotase signature 2. 245 256 - T 18-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 ProSitePatterns PS00482 Dihydroorotase signature 1. 11 19 - T 18-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 PIRSF PIRSF001237 1 344 2.7E-143 T 18-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 Gene3D G3DSA:3.20.20.140 2 343 1.4E-105 T 18-10-2018 RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 SUPERFAMILY SSF51556 2 342 1.76E-141 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 Pfam PF01979 Amidohydrolase family 11 311 1.7E-17 T 18-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 342 4.1E-138 T 18-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_12090 7d6202b1787abd411aad3bb50ef414fa 344 Hamap MF_00219 Dihydroorotase [pyrC]. 2 344 45.453 T 18-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 RU84_01990 4b8e08487c16620ac9c2a877729a92c1 515 Gene3D G3DSA:3.40.50.300 3 171 5.1E-10 T 18-10-2018 RU84_01990 4b8e08487c16620ac9c2a877729a92c1 515 SUPERFAMILY SSF52540 3 384 8.26E-54 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01990 4b8e08487c16620ac9c2a877729a92c1 515 Gene3D G3DSA:3.40.50.300 203 379 2.0E-21 T 18-10-2018 RU84_01990 4b8e08487c16620ac9c2a877729a92c1 515 Pfam PF05872 Bacterial protein of unknown function (DUF853) 12 514 7.6E-232 T 18-10-2018 IPR033186 Helicase HerA-like C-terminal RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Pfam PF01627 Hpt domain 833 909 3.0E-10 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SUPERFAMILY SSF47226 769 891 2.09E-17 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Gene3D G3DSA:3.30.565.10 354 528 1.5E-48 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SMART SM00387 402 523 1.4E-34 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 471 2.7E-9 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 457 2.7E-9 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 496 2.7E-9 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SUPERFAMILY SSF47384 275 356 1.73E-22 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SUPERFAMILY SSF55874 344 518 5.63E-41 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 521 3.7E-26 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Gene3D G3DSA:1.20.120.160 810 932 4.8E-24 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Gene3D G3DSA:1.10.287.130 252 353 7.6E-27 T 18-10-2018 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SMART SM00073 823 924 0.0029 T 18-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Pfam PF00072 Response regulator receiver domain 665 786 9.2E-23 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SMART SM00448 663 786 2.5E-33 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SUPERFAMILY SSF52172 661 830 1.29E-33 T 18-10-2018 IPR011006 CheY-like superfamily RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Gene3D G3DSA:3.40.50.2300 648 796 3.7E-38 T 18-10-2018 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 SMART SM00388 289 355 1.8E-23 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_15415 a77afc23df91cfa72c290ce201bea0d4 935 Pfam PF00512 His Kinase A (phospho-acceptor) domain 290 355 4.3E-21 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_01715 489413b55685134109ae70463f335577 264 Pfam PF08241 Methyltransferase domain 49 136 5.1E-17 T 18-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RU84_01715 489413b55685134109ae70463f335577 264 SUPERFAMILY SSF53335 11 183 5.63E-32 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_01715 489413b55685134109ae70463f335577 264 Gene3D G3DSA:3.40.50.150 11 241 2.8E-36 T 18-10-2018 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 614 8.7E-265 T 18-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Pfam PF00012 Hsp70 protein 21 594 7.4E-175 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 SUPERFAMILY SSF53067 201 376 8.19E-47 T 18-10-2018 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Gene3D G3DSA:3.90.640.10 239 311 6.2E-113 T 18-10-2018 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 212 222 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 329 345 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 149 169 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 465 481 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 48 60 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 360 380 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 20 33 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 PRINTS PR00301 70kDa heat shock protein signature 384 403 6.8E-53 T 18-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 SUPERFAMILY SSF53067 19 194 1.14E-54 T 18-10-2018 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Gene3D G3DSA:3.30.420.40 191 361 6.2E-113 T 18-10-2018 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Gene3D G3DSA:1.20.1270.10 519 614 2.7E-24 T 18-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 SUPERFAMILY SSF100920 383 536 2.09E-48 T 18-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 206 219 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 615 42.648 T 18-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Gene3D G3DSA:3.30.420.40 22 374 6.2E-113 T 18-10-2018 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 Gene3D G3DSA:2.60.34.10 380 518 6.5E-48 T 18-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 RU84_09165 6e176acd79cf48dc11c607ac1b5fe26b 619 SUPERFAMILY SSF100934 503 614 2.75E-30 T 18-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 3 235 2.4E-69 T 18-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 Gene3D G3DSA:1.25.40.10 20 247 3.0E-42 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 SUPERFAMILY SSF81901 5 194 7.32E-24 T 18-10-2018 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 SMART SM00028 26 59 0.94 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 SMART SM00028 60 96 54.0 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 SMART SM00028 97 130 140.0 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 SMART SM00028 133 166 3.5E-4 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 Pfam PF13432 Tetratricopeptide repeat 138 194 2.1E-6 T 18-10-2018 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 Pfam PF13432 Tetratricopeptide repeat 31 73 0.0069 T 18-10-2018 RU84_15860 4be104db97ae83da6e47e70cd3d16712 255 Pfam PF13432 Tetratricopeptide repeat 78 123 2.8E-5 T 18-10-2018 RU84_06130 e09b8098f6c37ddf36ed2da9821574c3 522 SUPERFAMILY SSF53720 25 507 2.88E-150 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_06130 e09b8098f6c37ddf36ed2da9821574c3 522 Gene3D G3DSA:3.40.309.10 272 474 9.4E-162 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_06130 e09b8098f6c37ddf36ed2da9821574c3 522 Pfam PF00171 Aldehyde dehydrogenase family 38 501 1.1E-144 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_06130 e09b8098f6c37ddf36ed2da9821574c3 522 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 297 308 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_06130 e09b8098f6c37ddf36ed2da9821574c3 522 Gene3D G3DSA:3.40.605.10 46 482 9.4E-162 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_06130 e09b8098f6c37ddf36ed2da9821574c3 522 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 30 505 2.3E-204 T 18-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RU84_16105 8d5cf5d78864e564d2a805aba9ea5730 230 Gene3D G3DSA:1.10.357.10 5 219 1.5E-65 T 18-10-2018 RU84_16105 8d5cf5d78864e564d2a805aba9ea5730 230 Pfam PF13972 Bacterial transcriptional repressor 62 208 3.1E-38 T 18-10-2018 IPR025722 Bacterial transcriptional repressor TetR RU84_16105 8d5cf5d78864e564d2a805aba9ea5730 230 SUPERFAMILY SSF46689 6 75 6.16E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_16105 8d5cf5d78864e564d2a805aba9ea5730 230 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 7.9E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_16105 8d5cf5d78864e564d2a805aba9ea5730 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.0E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_16105 8d5cf5d78864e564d2a805aba9ea5730 230 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.0E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_09395 eae9c809cd5d36138f4385e71beaf0a6 257 Pfam PF01026 TatD related DNase 3 254 4.7E-74 T 18-10-2018 IPR001130 TatD family GO:0016788 RU84_09395 eae9c809cd5d36138f4385e71beaf0a6 257 Gene3D G3DSA:3.20.20.140 1 257 4.4E-88 T 18-10-2018 RU84_09395 eae9c809cd5d36138f4385e71beaf0a6 257 PIRSF PIRSF005902 1 256 1.2E-75 T 18-10-2018 IPR001130 TatD family GO:0016788 RU84_09395 eae9c809cd5d36138f4385e71beaf0a6 257 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 255 5.4E-86 T 18-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 RU84_09395 eae9c809cd5d36138f4385e71beaf0a6 257 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 18-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 RU84_09395 eae9c809cd5d36138f4385e71beaf0a6 257 SUPERFAMILY SSF51556 2 255 2.81E-82 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 SUPERFAMILY SSF52540 350 600 3.03E-86 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 Pfam PF00005 ABC transporter 377 530 4.0E-33 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 ProSitePatterns PS00211 ABC transporters family signature. 502 516 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 SUPERFAMILY SSF90123 20 339 3.53E-47 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 Pfam PF00664 ABC transporter transmembrane region 41 307 5.5E-13 T 18-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 Gene3D G3DSA:3.40.50.300 351 604 1.3E-87 T 18-10-2018 RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 SMART SM00382 385 576 1.6E-19 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_09525 4e6aff07e950cc1ae0edc379dd222ed0 615 Gene3D G3DSA:1.20.1560.10 25 347 7.1E-25 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 351 3.6E-137 T 18-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 18-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 350 1.4E-134 T 18-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 352 48.803 T 18-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 Gene3D G3DSA:3.20.20.210 1 357 1.4E-165 T 18-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 18-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 RU84_05405 9c74c01775958bbfcc5e1b99df107061 357 SUPERFAMILY SSF51726 1 355 1.44E-115 T 18-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 RU84_01930 ec70bce00c8b88227913dc844af802ba 133 Gene3D G3DSA:3.90.79.10 1 130 8.2E-24 T 18-10-2018 RU84_01930 ec70bce00c8b88227913dc844af802ba 133 Pfam PF00293 NUDIX domain 6 124 1.3E-17 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_01930 ec70bce00c8b88227913dc844af802ba 133 ProSitePatterns PS00893 Nudix box signature. 34 55 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_01930 ec70bce00c8b88227913dc844af802ba 133 SUPERFAMILY SSF55811 3 125 1.9E-22 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 SUPERFAMILY SSF47323 470 596 4.25E-34 T 18-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 596 25.051 T 18-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 SUPERFAMILY SSF52374 116 485 4.83E-81 T 18-10-2018 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Gene3D G3DSA:1.10.730.10 470 596 1.7E-34 T 18-10-2018 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 SUPERFAMILY SSF55190 19 111 1.96E-22 T 18-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 6 596 5.7E-130 T 18-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Gene3D G3DSA:3.30.1360.70 1 111 1.6E-23 T 18-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 SMART SM01016 3 91 1.3E-33 T 18-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 91 3.8E-21 T 18-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 2.5E-19 T 18-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 2.5E-19 T 18-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 2.5E-19 T 18-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 PRINTS PR01038 Arginyl-tRNA synthetase signature 344 365 2.5E-19 T 18-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 SMART SM00836 475 596 2.1E-53 T 18-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Pfam PF05746 DALR anticodon binding domain 475 596 8.6E-34 T 18-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Pfam PF00750 tRNA synthetases class I (R) 102 177 2.5E-10 T 18-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 RU84_17620 57df5458b58451bc282baa3c8421b45f 596 Pfam PF00750 tRNA synthetases class I (R) 221 444 5.2E-12 T 18-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 RU84_13760 ee6912465326902f15b9c56cae71df54 282 Pfam PF13230 Glutamine amidotransferases class-II 1 266 4.9E-121 T 18-10-2018 IPR026869 Putative glutamine amidotransferase type 2 RU84_13760 ee6912465326902f15b9c56cae71df54 282 Gene3D G3DSA:3.60.20.10 1 259 9.5E-95 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_13760 ee6912465326902f15b9c56cae71df54 282 SUPERFAMILY SSF56235 2 252 7.46E-47 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_16805 25da18a33ea61bbaf6e6c0091bab6b79 184 Gene3D G3DSA:3.40.1740.10 1 184 2.5E-74 T 18-10-2018 RU84_16805 25da18a33ea61bbaf6e6c0091bab6b79 184 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 4 184 33.269 T 18-10-2018 IPR003774 Protein of unknown function UPF0301 RU84_16805 25da18a33ea61bbaf6e6c0091bab6b79 184 Pfam PF02622 Uncharacterized ACR, COG1678 15 171 1.5E-44 T 18-10-2018 IPR003774 Protein of unknown function UPF0301 RU84_16805 25da18a33ea61bbaf6e6c0091bab6b79 184 SUPERFAMILY SSF143456 5 184 2.22E-59 T 18-10-2018 RU84_16930 9502b1269c43e21a102c6bd4449b634d 474 Pfam PF03553 Na+/H+ antiporter family 150 468 2.7E-64 T 18-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 RU84_16930 9502b1269c43e21a102c6bd4449b634d 474 Pfam PF13726 Na+-H+ antiporter family 2 88 7.1E-33 T 18-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal RU84_16930 9502b1269c43e21a102c6bd4449b634d 474 PRINTS PR00173 Glutamate-aspartate symporter signature 407 426 1.4E-5 T 18-10-2018 RU84_16930 9502b1269c43e21a102c6bd4449b634d 474 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 1.4E-5 T 18-10-2018 RU84_05920 313b2eaef8c51d8b43f027f4c3d5a4c1 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 2.2E-18 T 18-10-2018 IPR010035 ThiS, thiamine-biosynthesis RU84_05920 313b2eaef8c51d8b43f027f4c3d5a4c1 65 Gene3D G3DSA:3.10.20.30 1 65 9.2E-20 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_05920 313b2eaef8c51d8b43f027f4c3d5a4c1 65 Pfam PF02597 ThiS family 8 65 1.2E-10 T 18-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 RU84_05920 313b2eaef8c51d8b43f027f4c3d5a4c1 65 SUPERFAMILY SSF54285 2 64 1.05E-16 T 18-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 Gene3D G3DSA:2.40.100.10 3 167 1.7E-66 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 SUPERFAMILY SSF50891 6 167 4.97E-59 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 6 165 4.8E-50 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 40 57 - T 18-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 PIRSF PIRSF001467 1 169 2.0E-28 T 18-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 57 2.1E-13 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 19 34 2.1E-13 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_06855 5cd1d86e7cfc87e86f83af041afc503f 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 2.1E-13 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_04110 0b33bb69fdc8cebfd3e77db324acb527 222 Gene3D G3DSA:3.40.50.150 51 212 4.7E-21 T 18-10-2018 RU84_04110 0b33bb69fdc8cebfd3e77db324acb527 222 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 88 155 3.3E-15 T 18-10-2018 RU84_04110 0b33bb69fdc8cebfd3e77db324acb527 222 SUPERFAMILY SSF53335 62 209 2.22E-21 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_05715 c2fdfcf93a1b457ed6b7225a52a20a32 409 SUPERFAMILY SSF53474 84 394 3.85E-26 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05715 c2fdfcf93a1b457ed6b7225a52a20a32 409 PIRSF PIRSF029171 1 409 1.9E-87 T 18-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RU84_05715 c2fdfcf93a1b457ed6b7225a52a20a32 409 Pfam PF03583 Secretory lipase 117 371 5.9E-12 T 18-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 RU84_05715 c2fdfcf93a1b457ed6b7225a52a20a32 409 Gene3D G3DSA:3.40.50.1820 35 296 7.1E-51 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_09245 173df6985f9f851085f5d50be36518bb 380 SUPERFAMILY SSF161098 175 363 7.33E-22 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09245 173df6985f9f851085f5d50be36518bb 380 Gene3D G3DSA:1.10.3720.10 165 379 1.5E-21 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09245 173df6985f9f851085f5d50be36518bb 380 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 380 2.0E-29 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_09245 173df6985f9f851085f5d50be36518bb 380 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 21 58 7.0E-7 T 18-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain RU84_03080 9c31002585a377f7b936bb5367f7c3cf 222 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 9 216 39.864 T 18-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RU84_03080 9c31002585a377f7b936bb5367f7c3cf 222 SUPERFAMILY SSF51366 10 213 3.14E-61 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_03080 9c31002585a377f7b936bb5367f7c3cf 222 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 11 211 1.8E-60 T 18-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RU84_03080 9c31002585a377f7b936bb5367f7c3cf 222 Gene3D G3DSA:3.20.20.70 7 218 6.3E-67 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_13055 b233cf7b404063d8b1da0340606ea9ab 664 SUPERFAMILY SSF88713 53 280 1.97E-36 T 18-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RU84_13055 b233cf7b404063d8b1da0340606ea9ab 664 Pfam PF01522 Polysaccharide deacetylase 93 257 5.1E-25 T 18-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RU84_13055 b233cf7b404063d8b1da0340606ea9ab 664 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 37 657 1.1E-264 T 18-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 RU84_13055 b233cf7b404063d8b1da0340606ea9ab 664 Gene3D G3DSA:3.20.20.80 302 661 1.5E-138 T 18-10-2018 RU84_13055 b233cf7b404063d8b1da0340606ea9ab 664 Gene3D G3DSA:3.20.20.370 28 296 2.1E-71 T 18-10-2018 RU84_13055 b233cf7b404063d8b1da0340606ea9ab 664 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 313 637 8.2E-145 T 18-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 PRINTS PR00885 Bacterial general secretion pathway protein H signature 8 22 1.3E-8 T 18-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 PRINTS PR00885 Bacterial general secretion pathway protein H signature 145 160 1.3E-8 T 18-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 PRINTS PR00885 Bacterial general secretion pathway protein H signature 23 37 1.3E-8 T 18-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 32 5.5E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 11 31 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 SUPERFAMILY SSF54523 13 84 4.0E-8 T 18-10-2018 RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 Gene3D G3DSA:3.30.700.10 13 69 1.6E-6 T 18-10-2018 RU84_09385 f3223a2f28c1067e9871b89784d5bc7c 184 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 32 1.5E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_15690 ddc60dad9a69f37ca0d6ea92d0bb8788 253 Pfam PF00899 ThiF family 22 248 6.5E-37 T 18-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RU84_15690 ddc60dad9a69f37ca0d6ea92d0bb8788 253 SUPERFAMILY SSF69572 8 248 1.83E-59 T 18-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RU84_15690 ddc60dad9a69f37ca0d6ea92d0bb8788 253 Gene3D G3DSA:3.40.50.720 2 253 6.5E-90 T 18-10-2018 RU84_03600 c4b8a0c4eb1895ac0ea8f8dd76228905 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 213 8.7E-49 T 18-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RU84_03600 c4b8a0c4eb1895ac0ea8f8dd76228905 244 Gene3D G3DSA:3.40.50.620 6 244 4.6E-69 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_03600 c4b8a0c4eb1895ac0ea8f8dd76228905 244 SUPERFAMILY SSF52402 13 201 3.27E-49 T 18-10-2018 RU84_03600 c4b8a0c4eb1895ac0ea8f8dd76228905 244 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 237 4.8E-79 T 18-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 RU84_03600 c4b8a0c4eb1895ac0ea8f8dd76228905 244 PIRSF PIRSF000857 6 244 7.1E-79 T 18-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.0E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.0E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 7.0E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.0E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 7.0E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 Gene3D G3DSA:3.40.50.720 1 272 3.2E-61 T 18-10-2018 RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 181 3.3E-4 T 18-10-2018 RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 Pfam PF00106 short chain dehydrogenase 9 199 1.9E-48 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 SUPERFAMILY SSF51735 4 238 9.75E-58 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.2E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 1.2E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08565 4c08cfdc9de11a8636bfee250e9b559b 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.2E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06035 f8e3a1d21c4d4b97b23d9a4a5a99c97b 293 SUPERFAMILY SSF52540 46 191 8.74E-25 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06035 f8e3a1d21c4d4b97b23d9a4a5a99c97b 293 Gene3D G3DSA:3.40.50.300 49 191 9.6E-11 T 18-10-2018 RU84_06035 f8e3a1d21c4d4b97b23d9a4a5a99c97b 293 Pfam PF05673 Protein of unknown function (DUF815) 36 283 2.0E-103 T 18-10-2018 IPR008533 Domain of unknown function DUF815 RU84_16285 40c11627246dcdafd387748b98f5fb57 82 Pfam PF09834 Predicted membrane protein (DUF2061) 16 66 1.0E-17 T 18-10-2018 IPR018638 Domain of unknown function DUF2061, membrane RU84_08190 01ebfd3ccf19a34f10c0d26d574395cf 355 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 10 125 2.0E-14 T 18-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 RU84_08190 01ebfd3ccf19a34f10c0d26d574395cf 355 SUPERFAMILY SSF51735 7 142 5.16E-19 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08190 01ebfd3ccf19a34f10c0d26d574395cf 355 Gene3D G3DSA:3.40.50.720 8 153 2.5E-28 T 18-10-2018 RU84_15185 9ef5c83bcf1595b50b7e9d034499bb08 173 Pfam PF01740 STAS domain 12 102 4.1E-5 T 18-10-2018 IPR002645 STAS domain RU84_15185 9ef5c83bcf1595b50b7e9d034499bb08 173 Gene3D G3DSA:3.30.750.24 4 108 4.8E-12 T 18-10-2018 IPR036513 STAS domain superfamily RU84_15185 9ef5c83bcf1595b50b7e9d034499bb08 173 SUPERFAMILY SSF52091 8 105 5.1E-13 T 18-10-2018 IPR036513 STAS domain superfamily RU84_09940 bdbf270deb9f701c71705e1275dbc3d3 313 SUPERFAMILY SSF48452 192 291 1.56E-9 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_09940 bdbf270deb9f701c71705e1275dbc3d3 313 Gene3D G3DSA:1.25.40.10 159 308 5.1E-9 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_12805 ac2c1d7fb12bddce6b4e99a4effea898 225 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 8 223 2.1E-95 T 18-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_12805 ac2c1d7fb12bddce6b4e99a4effea898 225 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 4 224 36.904 T 18-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_12805 ac2c1d7fb12bddce6b4e99a4effea898 225 SUPERFAMILY SSF53955 51 221 4.78E-60 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_12805 ac2c1d7fb12bddce6b4e99a4effea898 225 Pfam PF00912 Transglycosylase 55 218 2.0E-55 T 18-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_12805 ac2c1d7fb12bddce6b4e99a4effea898 225 Gene3D G3DSA:1.10.3810.10 47 224 2.4E-58 T 18-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_01910 db5187bdfd029709a4460c05b65845d2 213 Pfam PF05494 MlaC protein 36 190 1.0E-36 T 18-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RU84_01910 db5187bdfd029709a4460c05b65845d2 213 Gene3D G3DSA:3.10.450.710 27 207 4.4E-46 T 18-10-2018 RU84_01910 db5187bdfd029709a4460c05b65845d2 213 PIRSF PIRSF004649 1 213 3.1E-54 T 18-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC RU84_08000 c2244628e7541df5fd43e390431e88ea 306 Gene3D G3DSA:3.40.190.10 102 300 1.3E-31 T 18-10-2018 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 1.5E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 1.5E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 1.5E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 SUPERFAMILY SSF53850 109 304 3.41E-23 T 18-10-2018 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 SUPERFAMILY SSF46785 15 97 6.61E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08000 c2244628e7541df5fd43e390431e88ea 306 Gene3D G3DSA:3.40.190.10 182 276 1.3E-31 T 18-10-2018 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 79 3.0E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08000 c2244628e7541df5fd43e390431e88ea 306 Pfam PF03466 LysR substrate binding domain 109 293 2.6E-9 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08000 c2244628e7541df5fd43e390431e88ea 306 Gene3D G3DSA:1.10.10.10 12 100 7.6E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 193 4.6E-4 T 18-10-2018 RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 SUPERFAMILY SSF51735 6 263 6.58E-62 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 Pfam PF00106 short chain dehydrogenase 10 195 3.4E-51 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 Gene3D G3DSA:3.40.50.720 1 268 2.5E-66 T 18-10-2018 RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-27 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.4E-27 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-27 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-27 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03765 05b267184c14e8f0a7eab82eb66bbf9c 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-27 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 Pfam PF00005 ABC transporter 21 169 3.2E-36 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 SMART SM00382 30 227 1.6E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 SUPERFAMILY SSF55021 250 334 1.04E-21 T 18-10-2018 RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 Gene3D G3DSA:3.30.70.260 233 338 1.3E-29 T 18-10-2018 RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 SUPERFAMILY SSF52540 1 240 1.77E-83 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 Gene3D G3DSA:3.40.50.300 1 232 5.7E-75 T 18-10-2018 RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 Pfam PF09383 NIL domain 266 334 4.0E-20 T 18-10-2018 IPR018449 NIL domain RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_06455 4059d2a2a15fa26a4be3b1a66761ca8a 341 SMART SM00930 262 337 9.9E-21 T 18-10-2018 IPR018449 NIL domain RU84_09780 d0c25b340031f93b0b99fc28f8d90656 280 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 49 117 2.6E-14 T 18-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RU84_09780 d0c25b340031f93b0b99fc28f8d90656 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 71 271 2.7E-13 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_09780 d0c25b340031f93b0b99fc28f8d90656 280 SUPERFAMILY SSF161098 52 256 5.49E-32 T 18-10-2018 IPR035906 MetI-like superfamily RU84_09780 d0c25b340031f93b0b99fc28f8d90656 280 Gene3D G3DSA:1.10.3720.10 39 272 1.6E-39 T 18-10-2018 IPR035906 MetI-like superfamily RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 SUPERFAMILY SSF56425 246 364 3.44E-42 T 18-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 Pfam PF02910 Fumarate reductase flavoprotein C-term 475 610 2.2E-34 T 18-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 PIRSF PIRSF000171 8 592 2.0E-34 T 18-10-2018 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 19 606 1.1E-229 T 18-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 Gene3D G3DSA:1.20.58.100 446 559 6.8E-31 T 18-10-2018 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 Gene3D G3DSA:3.50.50.60 19 427 2.8E-162 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 Pfam PF00890 FAD binding domain 19 416 1.8E-116 T 18-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 SUPERFAMILY SSF46977 465 611 1.09E-38 T 18-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 SUPERFAMILY SSF51905 14 444 2.59E-81 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 53 62 - T 18-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 Gene3D G3DSA:3.90.700.10 256 359 2.8E-162 T 18-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03930 41fe786c3011bd98fe8bb5ed1b45fc3a 611 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 17 611 7.0E-265 T 18-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_05130 781349a78f630fb5b0d880dd284f02ae 300 SUPERFAMILY SSF52540 52 288 1.86E-58 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05130 781349a78f630fb5b0d880dd284f02ae 300 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 53 300 8.0E-123 T 18-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 RU84_05130 781349a78f630fb5b0d880dd284f02ae 300 ProSitePatterns PS00211 ABC transporters family signature. 197 211 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05130 781349a78f630fb5b0d880dd284f02ae 300 Pfam PF00005 ABC transporter 69 224 7.2E-30 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_05130 781349a78f630fb5b0d880dd284f02ae 300 SMART SM00382 77 272 8.2E-9 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05130 781349a78f630fb5b0d880dd284f02ae 300 Gene3D G3DSA:3.40.50.300 52 298 5.6E-63 T 18-10-2018 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 192 424 7.1E-18 T 18-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 1.0E-36 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 144 170 1.0E-36 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 1.0E-36 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 30 55 1.0E-36 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 102 122 1.0E-36 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 185 207 1.0E-36 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 SUPERFAMILY SSF50022 13 159 6.81E-49 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 SUPERFAMILY SSF55961 163 425 9.42E-52 T 18-10-2018 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 Gene3D G3DSA:3.90.380.10 22 423 4.9E-112 T 18-10-2018 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 Pfam PF00355 Rieske [2Fe-2S] domain 45 129 9.0E-22 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_08060 5106e0a5377eefb332c210c7040cca7e 425 Gene3D G3DSA:2.102.10.10 45 168 4.9E-112 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_03485 aeb85b0192a30501cff2b0d3e76b4fe6 724 Pfam PF12805 FUSC-like inner membrane protein yccS 68 349 6.7E-87 T 18-10-2018 IPR032692 Integral membrane protein YccS, N-terminal RU84_03485 aeb85b0192a30501cff2b0d3e76b4fe6 724 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 708 6.8E-229 T 18-10-2018 IPR010020 Integral membrane protein, YccS/YhfK RU84_03485 aeb85b0192a30501cff2b0d3e76b4fe6 724 Pfam PF13515 Fusaric acid resistance protein-like 411 530 5.6E-20 T 18-10-2018 RU84_03485 aeb85b0192a30501cff2b0d3e76b4fe6 724 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 12 708 1.6E-246 T 18-10-2018 IPR010019 Integral membrane protein, YccS RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 SUPERFAMILY SSF53067 192 348 1.3E-23 T 18-10-2018 RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 SMART SM00842 12 181 0.0017 T 18-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 Gene3D G3DSA:3.30.1490.300 88 147 4.1E-87 T 18-10-2018 RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 SUPERFAMILY SSF53067 13 178 3.24E-14 T 18-10-2018 RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 Gene3D G3DSA:3.30.420.40 188 315 4.1E-87 T 18-10-2018 RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 12 351 3.5E-113 T 18-10-2018 IPR005883 Type IV pilus assembly protein PilM RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 PIRSF PIRSF019169 2 352 3.4E-123 T 18-10-2018 IPR005883 Type IV pilus assembly protein PilM RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 Pfam PF11104 Type IV pilus assembly protein PilM; 14 351 6.3E-136 T 18-10-2018 IPR005883 Type IV pilus assembly protein PilM RU84_01435 6bafc495ca76ea88bfe1a56f568d1082 352 Gene3D G3DSA:3.30.420.40 13 349 4.1E-87 T 18-10-2018 RU84_07405 aeca39ec93f8f62be187afadcc2aa444 414 SUPERFAMILY SSF54373 277 369 1.26E-9 T 18-10-2018 RU84_07405 aeca39ec93f8f62be187afadcc2aa444 414 Gene3D G3DSA:3.30.9.10 133 368 1.4E-33 T 18-10-2018 RU84_07405 aeca39ec93f8f62be187afadcc2aa444 414 Gene3D G3DSA:3.50.50.60 4 51 4.5E-11 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07405 aeca39ec93f8f62be187afadcc2aa444 414 SUPERFAMILY SSF51905 1 412 2.2E-39 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_07405 aeca39ec93f8f62be187afadcc2aa444 414 Pfam PF01266 FAD dependent oxidoreductase 3 405 1.8E-53 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_07405 aeca39ec93f8f62be187afadcc2aa444 414 Gene3D G3DSA:3.50.50.60 107 406 1.4E-33 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_17145 6c5538610d1772e072853fe47c96ee33 178 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 141 165 - T 18-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site RU84_17145 6c5538610d1772e072853fe47c96ee33 178 Gene3D G3DSA:1.20.120.910 48 177 2.7E-36 T 18-10-2018 RU84_17145 6c5538610d1772e072853fe47c96ee33 178 PRINTS PR00618 DksA/TraR zinc finger signature 153 165 8.7E-5 T 18-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria RU84_17145 6c5538610d1772e072853fe47c96ee33 178 PRINTS PR00618 DksA/TraR zinc finger signature 141 152 8.7E-5 T 18-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria RU84_17145 6c5538610d1772e072853fe47c96ee33 178 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 59 167 6.9E-51 T 18-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RU84_17145 6c5538610d1772e072853fe47c96ee33 178 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 137 170 1.2E-11 T 18-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RU84_17145 6c5538610d1772e072853fe47c96ee33 178 SUPERFAMILY SSF109635 41 136 6.8E-35 T 18-10-2018 IPR037187 DksA, N-terminal domain superfamily RU84_17145 6c5538610d1772e072853fe47c96ee33 178 SUPERFAMILY SSF57716 138 175 3.28E-10 T 18-10-2018 RU84_17145 6c5538610d1772e072853fe47c96ee33 178 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 55 177 29.143 T 18-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 Gene3D G3DSA:3.20.20.70 4 314 6.2E-132 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 SMART SM00729 43 252 3.3E-43 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 Pfam PF04055 Radical SAM superfamily 50 206 9.5E-16 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 SMART SM00876 220 312 1.7E-42 T 18-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 PIRSF PIRSF001619 1 318 3.3E-140 T 18-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 Hamap MF_01694 Biotin synthase [bioB]. 5 313 43.138 T 18-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 1.0E-124 T 18-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 1.0E-18 T 18-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 RU84_09655 9487b9eaaa6926e944dadbb34c1d5006 329 SUPERFAMILY SSF102114 5 310 1.31E-92 T 18-10-2018 RU84_14850 e47c99f6a37db83a13905a44478e09de 183 SUPERFAMILY SSF46689 9 67 4.51E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_14850 e47c99f6a37db83a13905a44478e09de 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.2E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14850 e47c99f6a37db83a13905a44478e09de 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.2E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14850 e47c99f6a37db83a13905a44478e09de 183 Gene3D G3DSA:1.10.357.10 3 180 3.3E-20 T 18-10-2018 RU84_14850 e47c99f6a37db83a13905a44478e09de 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 57 6.6E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08535 a61c63b8a9d5c864b3e4e160d53249ba 182 SUPERFAMILY SSF46689 12 69 1.49E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08535 a61c63b8a9d5c864b3e4e160d53249ba 182 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 5.1E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08535 a61c63b8a9d5c864b3e4e160d53249ba 182 Gene3D G3DSA:1.10.357.10 7 181 1.9E-21 T 18-10-2018 RU84_08535 a61c63b8a9d5c864b3e4e160d53249ba 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 6.0E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_08535 a61c63b8a9d5c864b3e4e160d53249ba 182 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 6.0E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_13685 35df02587a49b149e92aa3db96bcbfd0 371 SUPERFAMILY SSF54373 221 306 9.94E-21 T 18-10-2018 RU84_13685 35df02587a49b149e92aa3db96bcbfd0 371 SUPERFAMILY SSF51905 1 365 1.94E-46 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13685 35df02587a49b149e92aa3db96bcbfd0 371 Gene3D G3DSA:3.30.9.10 88 307 2.0E-78 T 18-10-2018 RU84_13685 35df02587a49b149e92aa3db96bcbfd0 371 Gene3D G3DSA:3.50.50.60 3 348 2.0E-78 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13685 35df02587a49b149e92aa3db96bcbfd0 371 Pfam PF01266 FAD dependent oxidoreductase 2 346 1.3E-60 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_11020 6979162294c89f64a79eeb2370a5bc8c 286 SUPERFAMILY SSF103481 46 134 3.66E-6 T 18-10-2018 RU84_11020 6979162294c89f64a79eeb2370a5bc8c 286 Pfam PF00892 EamA-like transporter family 146 275 2.8E-14 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_11020 6979162294c89f64a79eeb2370a5bc8c 286 SUPERFAMILY SSF103481 181 281 6.67E-10 T 18-10-2018 RU84_12755 95f06a6cebfe44196bbfec06df278dad 480 Pfam PF14052 Capsule assembly protein Wzi 89 466 5.6E-114 T 18-10-2018 IPR026950 Capsule assembly protein Wzi RU84_12755 95f06a6cebfe44196bbfec06df278dad 480 Gene3D G3DSA:2.40.160.130 22 475 1.0E-159 T 18-10-2018 IPR038636 Capsule assembly protein Wzi superfamily RU84_06845 46f11843b28082f028da808c5368b2cd 217 SUPERFAMILY SSF55469 1 215 4.97E-63 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_06845 46f11843b28082f028da808c5368b2cd 217 Pfam PF00881 Nitroreductase family 8 193 5.5E-24 T 18-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RU84_06845 46f11843b28082f028da808c5368b2cd 217 Gene3D G3DSA:3.40.109.10 1 216 2.2E-58 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_03015 b7df37bd494e990b6ab7f945829c23bb 127 Gene3D G3DSA:3.10.450.160 59 126 2.4E-16 T 18-10-2018 RU84_03015 b7df37bd494e990b6ab7f945829c23bb 127 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 72 117 7.0E-12 T 18-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB RU84_03015 b7df37bd494e990b6ab7f945829c23bb 127 Pfam PF11776 Nickel/cobalt transporter regulator 76 120 8.4E-19 T 18-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB RU84_10285 3add7c78b8152e9c2682efeff6063691 203 Pfam PF01810 LysE type translocator 16 200 2.6E-23 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_10145 f5a252ab23043593f39fd0355a8dec11 395 Gene3D G3DSA:1.20.1250.20 2 389 3.9E-30 T 18-10-2018 RU84_10145 f5a252ab23043593f39fd0355a8dec11 395 SUPERFAMILY SSF103473 7 391 5.62E-31 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10145 f5a252ab23043593f39fd0355a8dec11 395 Pfam PF07690 Major Facilitator Superfamily 217 391 5.0E-12 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 118 1.2E-32 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 PIRSF PIRSF016578 4 361 6.3E-16 T 18-10-2018 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 1.0E-39 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 SUPERFAMILY SSF47203 229 377 1.26E-41 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 SUPERFAMILY SSF56645 3 241 1.05E-75 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 Gene3D G3DSA:1.10.540.10 1 120 7.4E-39 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 Gene3D G3DSA:2.40.110.10 121 233 7.3E-40 T 18-10-2018 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 Gene3D G3DSA:1.20.140.10 234 377 1.5E-39 T 18-10-2018 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 2.3E-23 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_02405 084585e6fb6900a0c7e42d7dfd949575 385 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 124 136 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 Gene3D G3DSA:3.40.50.1220 184 310 8.2E-54 T 18-10-2018 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 SUPERFAMILY SSF52402 2 185 2.23E-57 T 18-10-2018 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 4.3E-34 T 18-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 Gene3D G3DSA:3.40.50.620 2 183 1.8E-54 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 SMART SM00893 3 182 8.0E-53 T 18-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 254 280 - T 18-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 PIRSF PIRSF000089 1 310 6.9E-102 T 18-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 SUPERFAMILY SSF52467 189 309 9.06E-45 T 18-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RU84_04365 ee7716acf5a50254ee9c4d3b0f3a0928 310 Pfam PF01012 Electron transfer flavoprotein domain 4 167 1.5E-39 T 18-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 SMART SM00363 98 162 4.3E-17 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 9.9E-32 T 18-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 35.198 T 18-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 Pfam PF01479 S4 domain 99 145 5.7E-18 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 Gene3D G3DSA:3.10.290.10 97 193 7.8E-79 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 SMART SM01390 3 97 2.1E-47 T 18-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 1.3E-80 T 18-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 Gene3D G3DSA:1.10.1050.10 6 208 7.8E-79 T 18-10-2018 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 18-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02130 ec7013bc7af99935b03480892bc47b5e 208 SUPERFAMILY SSF55174 2 208 8.24E-68 T 18-10-2018 RU84_04045 5a52ef1644c996bac5dfcb2ed09a549e 195 SUPERFAMILY SSF58113 13 180 3.27E-8 T 18-10-2018 RU84_04045 5a52ef1644c996bac5dfcb2ed09a549e 195 Gene3D G3DSA:1.20.120.20 2 128 1.8E-11 T 18-10-2018 RU84_11340 1ef2a93aa3b927631fa7f6078e7addfe 420 Gene3D G3DSA:2.40.160.10 30 420 1.6E-137 T 18-10-2018 IPR023614 Porin domain superfamily RU84_11340 1ef2a93aa3b927631fa7f6078e7addfe 420 Pfam PF03573 outer membrane porin, OprD family 38 419 4.0E-72 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_18615 8dabf0b8fbb896fc118da4a8767725aa 121 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 37 104 1.0E-7 T 18-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core RU84_18615 8dabf0b8fbb896fc118da4a8767725aa 121 SUPERFAMILY SSF101386 24 103 1.89E-12 T 18-10-2018 RU84_18615 8dabf0b8fbb896fc118da4a8767725aa 121 Gene3D G3DSA:1.10.287.1080 15 108 3.5E-10 T 18-10-2018 RU84_15885 bdb273bce811e2288152865d7579eca8 428 SUPERFAMILY SSF53756 47 417 2.39E-70 T 18-10-2018 RU84_15885 bdb273bce811e2288152865d7579eca8 428 Pfam PF13439 Glycosyltransferase Family 4 59 227 1.5E-22 T 18-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RU84_15885 bdb273bce811e2288152865d7579eca8 428 Gene3D G3DSA:3.40.50.2000 224 402 3.2E-62 T 18-10-2018 RU84_15885 bdb273bce811e2288152865d7579eca8 428 Pfam PF00534 Glycosyl transferases group 1 235 391 4.7E-33 T 18-10-2018 IPR001296 Glycosyl transferase, family 1 RU84_15885 bdb273bce811e2288152865d7579eca8 428 Gene3D G3DSA:3.40.50.2000 50 223 3.2E-62 T 18-10-2018 RU84_13320 4b22895d489e84e238f1d7aa7b8a609d 3452 Pfam PF02018 Carbohydrate binding domain 1830 1954 2.6E-6 T 18-10-2018 IPR003305 Carbohydrate-binding, CenC-like GO:0016798 RU84_13320 4b22895d489e84e238f1d7aa7b8a609d 3452 Pfam PF09327 Domain of unknown function (DUF1983) 3308 3376 1.1E-8 T 18-10-2018 IPR015406 Domain of unknown function DUF1983 RU84_13320 4b22895d489e84e238f1d7aa7b8a609d 3452 Pfam PF15711 Interleukin-like EMT inducer 2114 2203 2.5E-12 T 18-10-2018 IPR039477 ILEI/PANDER domain RU84_00820 f8acf9d6cc596a844e82c3a1051c1812 566 Gene3D G3DSA:3.90.1640.30 46 318 2.4E-87 T 18-10-2018 RU84_00820 f8acf9d6cc596a844e82c3a1051c1812 566 Pfam PF01368 DHH family 71 204 5.0E-10 T 18-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 RU84_00820 f8acf9d6cc596a844e82c3a1051c1812 566 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 23 562 3.6E-152 T 18-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 RU84_00820 f8acf9d6cc596a844e82c3a1051c1812 566 SUPERFAMILY SSF64182 52 449 5.36E-111 T 18-10-2018 IPR038763 DHH phosphoesterase superfamily RU84_00820 f8acf9d6cc596a844e82c3a1051c1812 566 Gene3D G3DSA:3.10.310.30 319 451 5.1E-33 T 18-10-2018 RU84_00820 f8acf9d6cc596a844e82c3a1051c1812 566 Pfam PF02272 DHHA1 domain 314 443 2.4E-26 T 18-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 RU84_14395 ccf3ca71dc75d733815cbc500f575b72 98 SUPERFAMILY SSF50715 6 97 7.32E-27 T 18-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_14395 ccf3ca71dc75d733815cbc500f575b72 98 Gene3D G3DSA:2.40.240.10 3 98 6.4E-30 T 18-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 RU84_14395 ccf3ca71dc75d733815cbc500f575b72 98 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 17 97 7.0E-39 T 18-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RU84_14395 ccf3ca71dc75d733815cbc500f575b72 98 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 4 98 24.91 T 18-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 RU84_14395 ccf3ca71dc75d733815cbc500f575b72 98 Pfam PF01386 Ribosomal L25p family 6 95 5.5E-26 T 18-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 RU84_11010 8b8518cef43f6d6438f8d74b1920f541 310 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 10 310 39.666 T 18-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 RU84_11010 8b8518cef43f6d6438f8d74b1920f541 310 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 12 301 1.4E-57 T 18-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RU84_11010 8b8518cef43f6d6438f8d74b1920f541 310 PIRSF PIRSF026649 9 310 1.5E-80 T 18-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RU84_03170 3c315a6f8d299bd30ede93f99f970899 139 Gene3D G3DSA:3.40.630.30 8 138 1.0E-38 T 18-10-2018 RU84_03170 3c315a6f8d299bd30ede93f99f970899 139 SUPERFAMILY SSF55729 2 138 1.3E-35 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_03170 3c315a6f8d299bd30ede93f99f970899 139 Pfam PF13673 Acetyltransferase (GNAT) domain 23 137 2.7E-21 T 18-10-2018 IPR000182 GNAT domain RU84_02685 b5cdc8f2e14147b595df2982311778b6 189 Gene3D G3DSA:1.20.1440.20 17 177 4.6E-30 T 18-10-2018 IPR023353 LemA-like domain superfamily RU84_02685 b5cdc8f2e14147b595df2982311778b6 189 Pfam PF04011 LemA family 7 168 1.0E-33 T 18-10-2018 IPR007156 LemA RU84_02685 b5cdc8f2e14147b595df2982311778b6 189 SUPERFAMILY SSF140478 26 165 2.62E-32 T 18-10-2018 IPR023353 LemA-like domain superfamily RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 6.2E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 6.2E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 6.2E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 68 4.8E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 Gene3D G3DSA:3.40.190.10 105 296 6.8E-58 T 18-10-2018 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 Gene3D G3DSA:1.10.10.10 5 95 8.6E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 Gene3D G3DSA:3.40.190.10 165 270 6.8E-58 T 18-10-2018 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 SUPERFAMILY SSF53850 93 303 4.65E-43 T 18-10-2018 RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 SUPERFAMILY SSF46785 7 116 2.12E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10135 983f29fbca80c4e351b5a95d66bce1b5 304 Pfam PF03466 LysR substrate binding domain 92 299 9.8E-40 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 SUPERFAMILY SSF56645 28 226 1.44E-37 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 Gene3D G3DSA:1.10.540.10 20 125 7.2E-16 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 Gene3D G3DSA:1.20.140.10 228 400 7.3E-46 T 18-10-2018 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 137 218 1.5E-8 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 13 403 6.3E-151 T 18-10-2018 IPR023922 Sulphate-starvation-induced SfnB RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 124 1.4E-7 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 SUPERFAMILY SSF47203 241 402 5.64E-17 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 245 378 1.2E-14 T 18-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 PIRSF PIRSF016578 5 393 8.0E-23 T 18-10-2018 RU84_09795 e98c804502766271b40bc4c6ca9c1d8b 403 Gene3D G3DSA:2.40.110.10 128 227 9.7E-27 T 18-10-2018 RU84_13035 bfe101076cebd8eb111822a564aef5bc 193 Pfam PF04973 Nicotinamide mononucleotide transporter 3 181 1.0E-44 T 18-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RU84_13035 bfe101076cebd8eb111822a564aef5bc 193 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 4 185 4.9E-26 T 18-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 RU84_00145 222f340397f9ee1811437238a040bdc3 243 Pfam PF01925 Sulfite exporter TauE/SafE 8 240 9.8E-29 T 18-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 7 218 1.6E-75 T 18-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 SUPERFAMILY SSF50475 15 218 1.36E-60 T 18-10-2018 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 PIRSF PIRSF000190 1 218 1.9E-74 T 18-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 14 218 35.991 T 18-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 178 218 7.9E-19 T 18-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 Gene3D G3DSA:2.30.110.10 4 218 6.5E-76 T 18-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 123 5.1E-23 T 18-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RU84_00815 4a87829d3b286160971cbbf51fb4ac54 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 188 201 - T 18-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 RU84_00435 b0910eec920724147c72f01ee3205fd8 171 SUPERFAMILY SSF101307 18 168 1.1E-41 T 18-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 RU84_00435 b0910eec920724147c72f01ee3205fd8 171 PIRSF PIRSF006162 14 171 3.4E-49 T 18-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 RU84_00435 b0910eec920724147c72f01ee3205fd8 171 Pfam PF04608 Phosphatidylglycerophosphatase A 25 167 9.6E-47 T 18-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 16.58 T 18-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 18-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 7.1E-19 T 18-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 7.1E-19 T 18-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 7.1E-19 T 18-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 Pfam PF01632 Ribosomal protein L35 3 60 1.6E-22 T 18-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 SUPERFAMILY SSF143034 3 63 2.62E-21 T 18-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 3 63 8.6E-25 T 18-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 RU84_15310 8b503ba3d59b30ba0e6f04d453aa00db 64 Gene3D G3DSA:2.40.50.530 4 63 8.7E-22 T 18-10-2018 RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 SMART SM00422 1 70 1.2E-27 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 Gene3D G3DSA:1.10.1660.10 1 136 3.9E-29 T 18-10-2018 RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 Pfam PF13411 MerR HTH family regulatory protein 1 69 1.5E-18 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 SUPERFAMILY SSF46955 1 113 1.14E-27 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.3E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.3E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_08200 ec1fd21142e2fd322ece2025c7d5f234 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.3E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_10090 9a0d1a859d3c6c0f4e8f04f197b64be8 253 TIGRFAM TIGR00808 malonate_madM: malonate transporter, MadM subunit 3 253 6.3E-133 T 18-10-2018 IPR004691 Malonate/sodium symporter MadM subunit GO:0044668 RU84_10090 9a0d1a859d3c6c0f4e8f04f197b64be8 253 Pfam PF03818 Malonate/sodium symporter MadM subunit 2 60 2.2E-22 T 18-10-2018 IPR018402 Malonate/sodium symporter MadM subunit, N-terminal RU84_16080 6fa6b08d4ea350dde8cbd45cc37b68b5 173 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 3 152 3.7E-62 T 18-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RU84_16080 6fa6b08d4ea350dde8cbd45cc37b68b5 173 Pfam PF01625 Peptide methionine sulfoxide reductase 3 153 1.7E-65 T 18-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RU84_16080 6fa6b08d4ea350dde8cbd45cc37b68b5 173 SUPERFAMILY SSF55068 1 163 1.05E-73 T 18-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RU84_16080 6fa6b08d4ea350dde8cbd45cc37b68b5 173 Gene3D G3DSA:3.30.1060.10 1 159 1.8E-72 T 18-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RU84_16080 6fa6b08d4ea350dde8cbd45cc37b68b5 173 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 157 37.498 T 18-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 RU84_01170 7fbe4783bb2d390deb7e6576e8f3b482 252 SUPERFAMILY SSF51366 1 251 1.02E-85 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_01170 7fbe4783bb2d390deb7e6576e8f3b482 252 Gene3D G3DSA:3.20.20.70 1 252 6.6E-110 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_01170 7fbe4783bb2d390deb7e6576e8f3b482 252 Pfam PF00977 Histidine biosynthesis protein 5 234 8.2E-89 T 18-10-2018 IPR006062 Histidine biosynthesis GO:0000105 RU84_01170 7fbe4783bb2d390deb7e6576e8f3b482 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 5.7E-113 T 18-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RU84_01170 7fbe4783bb2d390deb7e6576e8f3b482 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 48.716 T 18-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 10 426 5.9E-205 T 18-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 PIRSF PIRSF006444 1 428 1.4E-201 T 18-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 Pfam PF14535 AMP-binding enzyme C-terminal domain 334 426 4.2E-26 T 18-10-2018 IPR028154 AMP-dependent ligase, C-terminal RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 Pfam PF00501 AMP-binding enzyme 14 287 3.7E-18 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 Gene3D G3DSA:3.40.50.12780 1 327 2.7E-131 T 18-10-2018 RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 Gene3D G3DSA:3.30.300.30 328 427 9.3E-32 T 18-10-2018 RU84_10720 88a39eb96e58a5b628ab750264955fb1 429 SUPERFAMILY SSF56801 37 406 1.83E-63 T 18-10-2018 RU84_07865 0a98a6bbe53a85f7908374e461ee6b61 364 PIRSF PIRSF005211 2 364 1.4E-58 T 18-10-2018 IPR012020 AB hydrolase 4 family RU84_07865 0a98a6bbe53a85f7908374e461ee6b61 364 SUPERFAMILY SSF53474 55 358 6.18E-27 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07865 0a98a6bbe53a85f7908374e461ee6b61 364 Pfam PF12146 Serine aminopeptidase, S33 106 340 2.9E-7 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_07865 0a98a6bbe53a85f7908374e461ee6b61 364 Gene3D G3DSA:3.40.50.1820 87 356 2.8E-19 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_09865 47fc31580b5c69d6e03aca2c4ab4f3f4 129 SUPERFAMILY SSF55331 4 121 5.09E-32 T 18-10-2018 IPR014347 Tautomerase/MIF superfamily RU84_09865 47fc31580b5c69d6e03aca2c4ab4f3f4 129 Gene3D G3DSA:3.30.429.10 2 129 2.6E-41 T 18-10-2018 IPR014347 Tautomerase/MIF superfamily RU84_09865 47fc31580b5c69d6e03aca2c4ab4f3f4 129 Pfam PF14552 Tautomerase enzyme 38 114 7.7E-26 T 18-10-2018 IPR037479 Tautomerase, MSAD family RU84_10675 4396b427fe9e1f73d61d45fec86fecad 397 SUPERFAMILY SSF89796 4 396 2.62E-122 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_10675 4396b427fe9e1f73d61d45fec86fecad 397 Pfam PF02515 CoA-transferase family III 5 373 1.0E-114 T 18-10-2018 IPR003673 CoA-transferase family III GO:0003824 RU84_10675 4396b427fe9e1f73d61d45fec86fecad 397 Gene3D G3DSA:3.30.1540.10 227 325 3.1E-123 T 18-10-2018 RU84_10675 4396b427fe9e1f73d61d45fec86fecad 397 Gene3D G3DSA:3.40.50.10540 5 390 3.1E-123 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 310 2.1E-128 T 18-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 119 2.4E-40 T 18-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 Gene3D G3DSA:3.30.1490.20 136 200 1.6E-108 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 SUPERFAMILY SSF52440 1 121 2.01E-40 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 SUPERFAMILY SSF56059 122 309 1.81E-55 T 18-10-2018 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 Hamap MF_00162 Glutathione synthetase [gshB]. 1 314 158.743 T 18-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 Gene3D G3DSA:3.30.470.20 114 294 1.6E-108 T 18-10-2018 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 Gene3D G3DSA:3.40.50.20 6 113 1.6E-108 T 18-10-2018 RU84_00720 4e6d146853bfb924cc5d4f2147b4d865 314 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 123 296 1.5E-75 T 18-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 RU84_08145 548522c826f050dc1c4e7f31eb1e27df 264 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 27 264 5.5E-39 T 18-10-2018 IPR010239 Conserved hypothetical protein CHP02001 RU84_08145 548522c826f050dc1c4e7f31eb1e27df 264 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 6 264 4.1E-39 T 18-10-2018 IPR010239 Conserved hypothetical protein CHP02001 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 336 348 - T 18-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 PRINTS PR00147 DNA photolyase signature 356 374 1.2E-23 T 18-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 PRINTS PR00147 DNA photolyase signature 395 409 1.2E-23 T 18-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 PRINTS PR00147 DNA photolyase signature 145 161 1.2E-23 T 18-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 PRINTS PR00147 DNA photolyase signature 336 352 1.2E-23 T 18-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 Gene3D G3DSA:1.10.579.10 304 480 5.3E-81 T 18-10-2018 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 Pfam PF03441 FAD binding domain of DNA photolyase 286 478 2.9E-83 T 18-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 SUPERFAMILY SSF52425 5 194 7.19E-46 T 18-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 Gene3D G3DSA:3.40.50.620 7 213 2.5E-73 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 SUPERFAMILY SSF48173 200 478 7.06E-108 T 18-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 Pfam PF00875 DNA photolyase 7 171 9.8E-39 T 18-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 RU84_04930 2c5ac42be6f984ba5039df9bfa6d49f0 480 Gene3D G3DSA:1.25.40.80 136 297 2.5E-73 T 18-10-2018 RU84_12490 bebf3733bd18f35ff536524727926ee0 133 SMART SM00507 6 75 4.5E-4 T 18-10-2018 IPR003615 HNH nuclease RU84_12490 bebf3733bd18f35ff536524727926ee0 133 Gene3D G3DSA:3.30.40.60 1 106 9.4E-12 T 18-10-2018 RU84_00855 d3f5c3813bb11f1683ad1239066d9d09 326 Gene3D G3DSA:2.30.30.60 159 207 9.5E-15 T 18-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily RU84_00855 d3f5c3813bb11f1683ad1239066d9d09 326 SUPERFAMILY SSF82689 213 310 4.05E-26 T 18-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 RU84_00855 d3f5c3813bb11f1683ad1239066d9d09 326 SUPERFAMILY SSF50182 143 205 2.84E-16 T 18-10-2018 IPR010920 LSM domain superfamily RU84_00855 d3f5c3813bb11f1683ad1239066d9d09 326 Gene3D G3DSA:3.30.70.100 210 304 1.3E-22 T 18-10-2018 RU84_00855 d3f5c3813bb11f1683ad1239066d9d09 326 SUPERFAMILY SSF82861 57 142 1.7E-8 T 18-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 RU84_00855 d3f5c3813bb11f1683ad1239066d9d09 326 Pfam PF00924 Mechanosensitive ion channel 105 300 1.1E-44 T 18-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 SMART SM00448 17 130 5.6E-35 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 Gene3D G3DSA:1.10.10.10 255 317 5.4E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 SMART SM00421 254 311 3.7E-19 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 Pfam PF00196 Bacterial regulatory proteins, luxR family 256 309 1.3E-19 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 ProSitePatterns PS00622 LuxR-type HTH domain signature. 271 298 - T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 Gene3D G3DSA:3.40.50.12740 16 190 9.3E-41 T 18-10-2018 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 SUPERFAMILY SSF46894 245 311 1.8E-18 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 SUPERFAMILY SSF52172 12 149 3.98E-37 T 18-10-2018 IPR011006 CheY-like superfamily RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 Pfam PF00072 Response regulator receiver domain 19 130 1.9E-25 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 287 299 5.2E-12 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 257 271 5.2E-12 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_10265 2b41cae1358bbe4c9846e2562955f810 319 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 271 287 5.2E-12 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_16675 1f652bf06bfdd0a16c5c6c0355186c53 500 Pfam PF13245 AAA domain 13 252 7.0E-13 T 18-10-2018 RU84_16675 1f652bf06bfdd0a16c5c6c0355186c53 500 Gene3D G3DSA:3.40.50.300 272 486 2.6E-12 T 18-10-2018 RU84_16675 1f652bf06bfdd0a16c5c6c0355186c53 500 SUPERFAMILY SSF52540 9 481 3.28E-49 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16675 1f652bf06bfdd0a16c5c6c0355186c53 500 Pfam PF13361 UvrD-like helicase C-terminal domain 424 477 3.3E-10 T 18-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 Pfam PF02634 FdhD/NarQ family 29 262 1.6E-67 T 18-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 Gene3D G3DSA:3.40.140.10 122 263 5.2E-45 T 18-10-2018 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 25 262 1.3E-67 T 18-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 PIRSF PIRSF015626 4 263 2.8E-76 T 18-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 SUPERFAMILY SSF53927 10 262 2.92E-76 T 18-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 Gene3D G3DSA:3.10.20.10 31 116 4.4E-6 T 18-10-2018 RU84_04300 a9574cb5b5d151dc38fd98be23246b42 263 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 5 263 29.289 T 18-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 RU84_06485 3f1d6d172acafcc63f6b108ef7abacca 301 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 298 2.2E-88 T 18-10-2018 RU84_06485 3f1d6d172acafcc63f6b108ef7abacca 301 Gene3D G3DSA:3.40.50.150 102 301 4.3E-54 T 18-10-2018 RU84_06485 3f1d6d172acafcc63f6b108ef7abacca 301 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 291 3.7E-85 T 18-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RU84_06485 3f1d6d172acafcc63f6b108ef7abacca 301 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 297 31.879 T 18-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RU84_06485 3f1d6d172acafcc63f6b108ef7abacca 301 SUPERFAMILY SSF53335 63 286 1.49E-39 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_06485 3f1d6d172acafcc63f6b108ef7abacca 301 PIRSF PIRSF000401 1 299 2.1E-84 T 18-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 RU84_09075 66e65db34863bcdfdcf9afeba10457d0 477 SUPERFAMILY SSF51905 2 238 5.73E-14 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09075 66e65db34863bcdfdcf9afeba10457d0 477 Gene3D G3DSA:3.50.50.60 1 424 7.2E-115 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09075 66e65db34863bcdfdcf9afeba10457d0 477 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 2 341 3.7E-111 T 18-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase RU84_00740 13bdcc9ffa1fede126d35456cc0f2e92 284 Pfam PF08478 POTRA domain, FtsQ-type 61 127 8.1E-13 T 18-10-2018 IPR013685 POTRA domain, FtsQ-type RU84_00740 13bdcc9ffa1fede126d35456cc0f2e92 284 Pfam PF03799 Cell division protein FtsQ 132 245 7.0E-16 T 18-10-2018 IPR005548 Cell division protein FtsQ/DivIB RU84_00740 13bdcc9ffa1fede126d35456cc0f2e92 284 Gene3D G3DSA:3.10.20.310 59 127 2.4E-12 T 18-10-2018 RU84_00740 13bdcc9ffa1fede126d35456cc0f2e92 284 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 32 253 22.235 T 18-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 RU84_00740 13bdcc9ffa1fede126d35456cc0f2e92 284 Gene3D G3DSA:3.40.50.11690 130 258 1.2E-30 T 18-10-2018 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 Pfam PF13604 AAA domain 126 321 2.4E-33 T 18-10-2018 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 Gene3D G3DSA:3.40.50.300 92 313 1.6E-52 T 18-10-2018 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 SUPERFAMILY SSF52540 126 558 1.32E-49 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 Gene3D G3DSA:3.40.50.300 451 567 2.1E-22 T 18-10-2018 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 Gene3D G3DSA:3.40.50.300 314 447 2.8E-12 T 18-10-2018 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 SMART SM00382 138 328 0.0086 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 58 578 7.7E-123 T 18-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 576 41.105 T 18-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 RU84_16615 436d54d49d1fe1d4e7dbdf73dd2ff4df 583 Pfam PF13538 UvrD-like helicase C-terminal domain 507 552 1.2E-12 T 18-10-2018 IPR027785 UvrD-like helicase C-terminal domain RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 5.9E-235 T 18-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 7.5E-39 T 18-10-2018 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 7.5E-39 T 18-10-2018 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 7.5E-39 T 18-10-2018 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 7.5E-39 T 18-10-2018 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 7.5E-39 T 18-10-2018 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 SUPERFAMILY SSF52833 1 100 2.12E-28 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 Gene3D G3DSA:3.50.50.60 327 450 3.4E-109 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 Gene3D G3DSA:3.40.30.80 1 199 3.3E-64 T 18-10-2018 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 Gene3D G3DSA:3.50.50.60 212 509 3.4E-109 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 18-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 SUPERFAMILY SSF52833 103 195 1.08E-20 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 1.7E-63 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 Pfam PF13192 Thioredoxin domain 119 194 2.0E-8 T 18-10-2018 IPR012336 Thioredoxin-like fold RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 PIRSF PIRSF000238 1 521 3.0E-257 T 18-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 504 2.1E-46 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_09950 8b51619ab90597c5dcbc72d48950922b 521 SUPERFAMILY SSF51905 202 514 5.25E-51 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08165 446ce2f18273bba30e3738550244db55 332 Gene3D G3DSA:3.90.850.10 109 320 3.4E-12 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_08165 446ce2f18273bba30e3738550244db55 332 PIRSF PIRSF033905 1 329 7.2E-157 T 18-10-2018 IPR009645 Uncharacterised conserved protein GguC RU84_08165 446ce2f18273bba30e3738550244db55 332 SUPERFAMILY SSF56529 116 312 2.56E-24 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_09080 06ffd81583b8bf5d159c320322d0f662 594 Pfam PF04183 IucA / IucC family 145 377 5.8E-51 T 18-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 RU84_09080 06ffd81583b8bf5d159c320322d0f662 594 Gene3D G3DSA:1.10.510.40 369 561 2.0E-12 T 18-10-2018 RU84_09080 06ffd81583b8bf5d159c320322d0f662 594 Pfam PF06276 Ferric iron reductase FhuF-like transporter 409 567 2.0E-34 T 18-10-2018 IPR022770 Ferric iron reductase FhuF domain RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 Pfam PF01842 ACT domain 352 417 1.8E-11 T 18-10-2018 IPR002912 ACT domain RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 Pfam PF00742 Homoserine dehydrogenase 135 313 1.1E-65 T 18-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 181 203 - T 18-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 SUPERFAMILY SSF55347 135 300 4.58E-54 T 18-10-2018 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 Gene3D G3DSA:3.30.70.260 347 419 2.8E-160 T 18-10-2018 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 SUPERFAMILY SSF51735 2 156 3.49E-34 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 Gene3D G3DSA:3.30.360.10 134 346 2.8E-160 T 18-10-2018 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 127 9.3E-20 T 18-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 SUPERFAMILY SSF55021 350 420 3.23E-11 T 18-10-2018 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 PIRSF PIRSF000098 1 431 2.9E-162 T 18-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RU84_17190 d25bdaa83f8e949de28fff6f166e8849 433 Gene3D G3DSA:3.40.50.720 4 338 2.8E-160 T 18-10-2018 RU84_07280 838b813157968dc9e4cd304439450b37 336 Pfam PF13379 NMT1-like family 3 248 2.7E-53 T 18-10-2018 RU84_07280 838b813157968dc9e4cd304439450b37 336 Gene3D G3DSA:3.40.190.10 95 210 7.6E-76 T 18-10-2018 RU84_07280 838b813157968dc9e4cd304439450b37 336 Gene3D G3DSA:3.40.190.10 11 334 7.6E-76 T 18-10-2018 RU84_07280 838b813157968dc9e4cd304439450b37 336 SUPERFAMILY SSF53850 8 262 1.32E-14 T 18-10-2018 RU84_02300 75a1ba7e60ea3f699c74e61ca79f74ce 647 SUPERFAMILY SSF53955 485 633 1.74E-39 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_02300 75a1ba7e60ea3f699c74e61ca79f74ce 647 Gene3D G3DSA:1.10.530.10 474 639 1.5E-38 T 18-10-2018 RU84_02300 75a1ba7e60ea3f699c74e61ca79f74ce 647 Pfam PF01464 Transglycosylase SLT domain 489 590 2.3E-20 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_02300 75a1ba7e60ea3f699c74e61ca79f74ce 647 Gene3D G3DSA:1.25.20.10 24 383 9.1E-53 T 18-10-2018 RU84_02300 75a1ba7e60ea3f699c74e61ca79f74ce 647 SUPERFAMILY SSF48435 26 477 1.44E-87 T 18-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 RU84_10595 99428e65716794e88d0f762462fc8f4d 301 Pfam PF03466 LysR substrate binding domain 92 295 1.3E-41 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10595 99428e65716794e88d0f762462fc8f4d 301 Gene3D G3DSA:1.10.10.10 1 86 2.1E-27 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10595 99428e65716794e88d0f762462fc8f4d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.8E-20 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10595 99428e65716794e88d0f762462fc8f4d 301 SUPERFAMILY SSF53850 92 297 2.71E-42 T 18-10-2018 RU84_10595 99428e65716794e88d0f762462fc8f4d 301 Gene3D G3DSA:3.40.190.290 92 295 6.4E-63 T 18-10-2018 RU84_10595 99428e65716794e88d0f762462fc8f4d 301 SUPERFAMILY SSF46785 5 86 1.01E-22 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10595 99428e65716794e88d0f762462fc8f4d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.9E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10595 99428e65716794e88d0f762462fc8f4d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.9E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10595 99428e65716794e88d0f762462fc8f4d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.9E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_06425 5b7ac07542ffcabd34fd90b2e637488c 400 SUPERFAMILY SSF103473 23 399 1.01E-32 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_06425 5b7ac07542ffcabd34fd90b2e637488c 400 Gene3D G3DSA:1.20.1250.20 16 396 4.9E-26 T 18-10-2018 RU84_06425 5b7ac07542ffcabd34fd90b2e637488c 400 Pfam PF07690 Major Facilitator Superfamily 27 348 6.4E-20 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_05330 af7188ab5f829f5e724bf69f5c09868e 256 SMART SM00382 26 213 3.7E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05330 af7188ab5f829f5e724bf69f5c09868e 256 Pfam PF00005 ABC transporter 17 164 7.5E-31 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_05330 af7188ab5f829f5e724bf69f5c09868e 256 Gene3D G3DSA:3.40.50.300 1 252 7.9E-70 T 18-10-2018 RU84_05330 af7188ab5f829f5e724bf69f5c09868e 256 SUPERFAMILY SSF52540 2 228 4.67E-62 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05330 af7188ab5f829f5e724bf69f5c09868e 256 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 Gene3D G3DSA:3.10.20.30 1 102 2.0E-31 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 233 7.3E-24 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 199 208 7.3E-24 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 156 163 7.3E-24 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 239 248 7.3E-24 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 139 151 7.3E-24 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00410 Phenol hydroxylase reductase family signature 303 311 7.3E-24 T 18-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 11 88 8.6E-17 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 156 163 3.8E-7 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 3.8E-7 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 303 311 3.8E-7 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 SUPERFAMILY SSF63380 78 207 1.56E-24 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 Gene3D G3DSA:3.40.50.80 203 335 2.1E-38 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 Pfam PF00175 Oxidoreductase NAD-binding domain 215 317 2.0E-23 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 SUPERFAMILY SSF52343 207 335 2.62E-34 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 SUPERFAMILY SSF54292 9 100 7.08E-28 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 Pfam PF00970 Oxidoreductase FAD-binding domain 111 205 2.0E-20 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_11320 73ad32a8a7e8a29d5eefa8decee4b8d4 338 Gene3D G3DSA:2.40.30.10 103 202 5.6E-25 T 18-10-2018 RU84_04170 6f58e1d1c84dc96aa366110baac1fea4 320 SUPERFAMILY SSF56281 24 303 2.36E-48 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_04170 6f58e1d1c84dc96aa366110baac1fea4 320 SMART SM00849 82 290 4.7E-28 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_04170 6f58e1d1c84dc96aa366110baac1fea4 320 Pfam PF00753 Metallo-beta-lactamase superfamily 81 276 3.4E-20 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_04170 6f58e1d1c84dc96aa366110baac1fea4 320 Gene3D G3DSA:3.60.15.10 26 316 1.8E-104 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 SUPERFAMILY SSF52540 317 525 3.3E-60 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 SUPERFAMILY SSF90123 22 315 1.83E-22 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 ProSitePatterns PS00211 ABC transporters family signature. 458 472 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 Pfam PF00664 ABC transporter transmembrane region 58 275 1.5E-7 T 18-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 Pfam PF00005 ABC transporter 337 486 2.6E-32 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 Gene3D G3DSA:1.20.1560.10 5 314 4.4E-15 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 SMART SM00382 346 529 2.1E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05380 76c3a71dc802fece47119c1e2f271bff 531 Gene3D G3DSA:3.40.50.300 322 529 1.9E-64 T 18-10-2018 RU84_06805 f56e129d13e1380ddae5c170ed981fbf 147 Pfam PF00583 Acetyltransferase (GNAT) family 32 133 3.1E-17 T 18-10-2018 IPR000182 GNAT domain RU84_06805 f56e129d13e1380ddae5c170ed981fbf 147 Gene3D G3DSA:3.40.630.30 2 139 7.0E-36 T 18-10-2018 RU84_06805 f56e129d13e1380ddae5c170ed981fbf 147 SUPERFAMILY SSF55729 1 140 1.21E-33 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_06805 f56e129d13e1380ddae5c170ed981fbf 147 PIRSF PIRSF037663 1 143 3.6E-11 T 18-10-2018 IPR017255 Acetyltransferase, GNAT, predicted RU84_07970 7812648b36377a425d8cabf401d04e05 809 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 417 438 - T 18-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RU84_07970 7812648b36377a425d8cabf401d04e05 809 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 172 200 - T 18-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 RU84_07970 7812648b36377a425d8cabf401d04e05 809 SMART SM00564 352 393 0.018 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 SMART SM00564 438 471 76.0 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 SMART SM00564 730 763 7.7E-5 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 SMART SM00564 224 255 0.0074 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 SMART SM00564 663 702 29.0 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 SUPERFAMILY SSF50998 172 793 8.11E-140 T 18-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RU84_07970 7812648b36377a425d8cabf401d04e05 809 Pfam PF01011 PQQ enzyme repeat 737 772 1.3E-5 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 Pfam PF01011 PQQ enzyme repeat 451 481 3.1E-9 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 Pfam PF13360 PQQ-like domain 201 390 2.8E-8 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_07970 7812648b36377a425d8cabf401d04e05 809 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 18 808 0.0 T 18-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 RU84_10220 0cc3dd39af3a8315bd729d00762c77ae 653 Gene3D G3DSA:3.40.640.10 281 541 7.1E-165 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_10220 0cc3dd39af3a8315bd729d00762c77ae 653 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 252 647 7.3E-164 T 18-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 RU84_10220 0cc3dd39af3a8315bd729d00762c77ae 653 Gene3D G3DSA:3.90.1150.10 253 642 7.1E-165 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_10220 0cc3dd39af3a8315bd729d00762c77ae 653 SUPERFAMILY SSF53383 249 648 1.38E-121 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_10220 0cc3dd39af3a8315bd729d00762c77ae 653 Pfam PF00266 Aminotransferase class-V 270 639 2.0E-143 T 18-10-2018 IPR000192 Aminotransferase class V domain RU84_16800 b792abbb38096c79d38b16f3ed875755 555 Gene3D G3DSA:3.40.50.300 1 200 5.2E-38 T 18-10-2018 RU84_16800 b792abbb38096c79d38b16f3ed875755 555 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 505 2.1E-18 T 18-10-2018 IPR003395 RecF/RecN/SMC, N-terminal RU84_16800 b792abbb38096c79d38b16f3ed875755 555 SUPERFAMILY SSF52540 1 215 1.33E-50 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16800 b792abbb38096c79d38b16f3ed875755 555 SUPERFAMILY SSF52540 3 504 5.67E-28 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16800 b792abbb38096c79d38b16f3ed875755 555 Gene3D G3DSA:3.40.50.300 220 547 1.4E-47 T 18-10-2018 RU84_16800 b792abbb38096c79d38b16f3ed875755 555 PIRSF PIRSF003128 1 551 1.3E-137 T 18-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RU84_16800 b792abbb38096c79d38b16f3ed875755 555 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 545 5.6E-138 T 18-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 RU84_08540 8e69cdee3230e32c88f9f105c28c014b 369 Gene3D G3DSA:1.10.260.40 3 65 5.1E-6 T 18-10-2018 RU84_08540 8e69cdee3230e32c88f9f105c28c014b 369 SUPERFAMILY SSF47413 4 66 2.04E-8 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_08540 8e69cdee3230e32c88f9f105c28c014b 369 Pfam PF06114 IrrE N-terminal-like domain 156 277 3.2E-20 T 18-10-2018 IPR010359 IrrE N-terminal-like domain RU84_13600 82aef8fd4fd552ae994968c5435e7ebb 226 SUPERFAMILY SSF53098 1 198 1.9E-24 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_13600 82aef8fd4fd552ae994968c5435e7ebb 226 SMART SM00479 2 169 4.5E-4 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_13600 82aef8fd4fd552ae994968c5435e7ebb 226 Gene3D G3DSA:3.30.420.10 3 177 1.6E-24 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 PIRSF PIRSF002097 1 87 6.1E-35 T 18-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 Pfam PF02954 Bacterial regulatory protein, Fis family 44 83 3.2E-15 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 50 67 1.3E-12 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 67 87 1.3E-12 T 18-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 46 58 2.0E-9 T 18-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 31 46 2.0E-9 T 18-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 15 31 2.0E-9 T 18-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 Gene3D G3DSA:1.10.10.60 2 86 7.0E-27 T 18-10-2018 RU84_06475 9beb2be0ff7814b76031033622824e1f 89 SUPERFAMILY SSF46689 15 86 6.27E-22 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03730 84d5fdd73163fcf8366d72de636dba12 395 Gene3D G3DSA:1.10.3430.10 1 394 1.6E-97 T 18-10-2018 IPR029020 Ammonium/urea transporter RU84_03730 84d5fdd73163fcf8366d72de636dba12 395 Pfam PF00909 Ammonium Transporter Family 8 386 1.6E-84 T 18-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RU84_03730 84d5fdd73163fcf8366d72de636dba12 395 SUPERFAMILY SSF111352 2 370 1.83E-94 T 18-10-2018 RU84_03730 84d5fdd73163fcf8366d72de636dba12 395 ProSitePatterns PS01219 Ammonium transporters signature. 152 177 - T 18-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RU84_19310 a528299c50fcbb727f6b13f0662c40b2 230 SUPERFAMILY SSF53098 66 224 1.9E-48 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_19310 a528299c50fcbb727f6b13f0662c40b2 230 Pfam PF00665 Integrase core domain 66 176 6.4E-26 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_19310 a528299c50fcbb727f6b13f0662c40b2 230 Gene3D G3DSA:3.30.420.10 61 209 7.7E-19 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_15795 28d973050975d47a64e240ffca298af3 243 Pfam PF12811 Bax inhibitor 1 like 5 240 3.4E-62 T 18-10-2018 IPR010539 Protein of unknown function UCP009160 RU84_15795 28d973050975d47a64e240ffca298af3 243 PIRSF PIRSF009160 1 243 1.7E-78 T 18-10-2018 IPR010539 Protein of unknown function UCP009160 RU84_12765 14c0aab14b725d4d9c2821d349052515 162 SUPERFAMILY SSF53474 2 95 5.68E-11 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_12765 14c0aab14b725d4d9c2821d349052515 162 Gene3D G3DSA:3.40.50.1820 1 161 5.7E-17 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_12765 14c0aab14b725d4d9c2821d349052515 162 Pfam PF05728 Uncharacterised protein family (UPF0227) 2 88 1.8E-10 T 18-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RU84_06225 17f82660dd275fe914e807b2e0d2027d 182 Pfam PF05229 Spore Coat Protein U domain 27 179 1.1E-10 T 18-10-2018 IPR007893 Spore coat protein U RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 SUPERFAMILY SSF50129 9 174 2.2E-28 T 18-10-2018 IPR011032 GroES-like superfamily RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 SUPERFAMILY SSF51735 141 342 4.68E-28 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 Gene3D G3DSA:3.40.50.720 153 227 3.4E-51 T 18-10-2018 RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 Gene3D G3DSA:3.90.180.10 16 152 3.4E-51 T 18-10-2018 RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 Gene3D G3DSA:3.40.50.720 272 324 2.3E-14 T 18-10-2018 RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 Pfam PF00107 Zinc-binding dehydrogenase 175 340 2.6E-13 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 102 9.9E-11 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_14955 55cd59e3a0bd0df3bf14f6b8c31b5647 391 Gene3D G3DSA:3.90.180.10 327 366 2.3E-14 T 18-10-2018 RU84_19120 3690a9bb8ce09869a45f4b4e2f201712 160 ProSitePatterns PS01123 Thermonuclease family signature 1. 29 54 - T 18-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 RU84_19120 3690a9bb8ce09869a45f4b4e2f201712 160 SUPERFAMILY SSF50199 16 152 4.18E-38 T 18-10-2018 RU84_19120 3690a9bb8ce09869a45f4b4e2f201712 160 SMART SM00318 18 147 2.9E-43 T 18-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 RU84_19120 3690a9bb8ce09869a45f4b4e2f201712 160 Pfam PF00565 Staphylococcal nuclease homologue 44 146 7.2E-26 T 18-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 RU84_19120 3690a9bb8ce09869a45f4b4e2f201712 160 Gene3D G3DSA:2.40.50.90 11 152 1.9E-36 T 18-10-2018 IPR035437 SNase-like, OB-fold superfamily RU84_06480 b81870ca7a6923b4915e85e495fba70f 281 Pfam PF11906 Protein of unknown function (DUF3426) 139 278 2.6E-15 T 18-10-2018 IPR021834 Protein of unknown function DUF3426 RU84_06480 b81870ca7a6923b4915e85e495fba70f 281 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 40 2.4E-8 T 18-10-2018 IPR011723 Zinc finger/thioredoxin putative RU84_09580 335b67b9a931b19677a1273285c0bfda 248 Pfam PF09992 Phosphodiester glycosidase 74 222 1.6E-21 T 18-10-2018 IPR018711 Phosphodiester glycosidase RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 SUPERFAMILY SSF51120 1074 1209 4.84E-16 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF12245 Bacterial Ig-like domain (group 3) 682 698 1.5 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF12245 Bacterial Ig-like domain (group 3) 517 530 3.9 T 18-10-2018 IPR022038 Bacterial Ig-like domain RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 368 448 1.6E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 456 532 2.8E-7 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 120 197 1.7E-7 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 536 615 2.4E-6 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 205 280 7.2E-12 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 288 363 1.1E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 620 700 2.7E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.60.40.10 919 996 3.4E-8 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 SUPERFAMILY SSF51120 1238 1393 4.84E-19 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.150.10.10 1253 1387 2.4E-16 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1110 1128 - T 18-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 PRINTS PR00313 NodO calcium binding signature 1294 1302 8.6E-11 T 18-10-2018 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 PRINTS PR00313 NodO calcium binding signature 1276 1284 8.6E-11 T 18-10-2018 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 PRINTS PR00313 NodO calcium binding signature 1465 1474 8.6E-11 T 18-10-2018 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 PRINTS PR00313 NodO calcium binding signature 1120 1131 8.6E-11 T 18-10-2018 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1438 1454 0.13 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1426 1436 58.0 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1286 1301 0.033 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1115 1130 0.033 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1096 1112 0.0024 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1457 1472 0.033 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1267 1283 0.13 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1255 1265 58.0 T 18-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1281 1299 - T 18-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.150.10.10 1089 1236 1.6E-16 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 1628 1692 3.5E-8 T 18-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1452 1470 - T 18-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 SUPERFAMILY SSF51120 1409 1574 7.85E-18 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_08370 2c0c22dfe80bba407fe645c20a307d9e 1705 Gene3D G3DSA:2.150.10.10 1388 1541 3.8E-17 T 18-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal RU84_13700 bcfd5591bc260c4e1192d79356939535 125 SUPERFAMILY SSF54593 3 121 1.21E-15 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_13700 bcfd5591bc260c4e1192d79356939535 125 Gene3D G3DSA:3.10.180.10 3 121 2.5E-18 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_07095 3c7203f0717af10fd6d161ad3907991e 390 Pfam PF03594 Benzoate membrane transport protein 6 382 5.2E-126 T 18-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RU84_07095 3c7203f0717af10fd6d161ad3907991e 390 TIGRFAM TIGR00843 benE: benzoate transporter 8 384 1.3E-110 T 18-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RU84_11825 3d545fa218fc4252cb2682c098160d2f 443 Pfam PF00324 Amino acid permease 16 376 1.9E-30 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_11825 3d545fa218fc4252cb2682c098160d2f 443 PIRSF PIRSF006060 1 439 6.8E-58 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_11825 3d545fa218fc4252cb2682c098160d2f 443 Gene3D G3DSA:1.20.1740.10 6 442 3.5E-65 T 18-10-2018 RU84_01175 a3abf415b69460939d2ab837e06e7cb8 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 93.723 T 18-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 RU84_01175 a3abf415b69460939d2ab837e06e7cb8 316 Gene3D G3DSA:3.30.200.20 1 101 3.0E-19 T 18-10-2018 RU84_01175 a3abf415b69460939d2ab837e06e7cb8 316 Gene3D G3DSA:3.90.1200.10 104 315 1.1E-53 T 18-10-2018 RU84_01175 a3abf415b69460939d2ab837e06e7cb8 316 SUPERFAMILY SSF56112 5 313 1.46E-53 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_01175 a3abf415b69460939d2ab837e06e7cb8 316 Pfam PF01636 Phosphotransferase enzyme family 26 255 1.7E-22 T 18-10-2018 IPR002575 Aminoglycoside phosphotransferase RU84_17850 fe06d5fdb8550deb9ad44c5b933086bd 126 Pfam PF12680 SnoaL-like domain 10 107 1.0E-9 T 18-10-2018 IPR037401 SnoaL-like domain RU84_17850 fe06d5fdb8550deb9ad44c5b933086bd 126 SUPERFAMILY SSF54427 2 114 2.99E-18 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_17850 fe06d5fdb8550deb9ad44c5b933086bd 126 Gene3D G3DSA:3.10.450.50 3 126 1.4E-21 T 18-10-2018 RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 Gene3D G3DSA:1.10.10.10 26 105 6.4E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 SMART SM00346 37 127 2.4E-22 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 Gene3D G3DSA:3.30.450.40 106 281 3.1E-33 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 Pfam PF09339 IclR helix-turn-helix domain 39 90 4.5E-16 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 SUPERFAMILY SSF46785 37 111 2.1E-12 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 SUPERFAMILY SSF55781 109 279 9.81E-39 T 18-10-2018 RU84_10515 b58f095d31f93817027a0fca4cb03e07 281 Pfam PF01614 Bacterial transcriptional regulator 155 276 2.0E-13 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_04400 9741e4b728708c6f0e58e084e7e7df22 356 Pfam PF12698 ABC-2 family transporter protein 1 343 5.7E-27 T 18-10-2018 RU84_04400 9741e4b728708c6f0e58e084e7e7df22 356 Gene3D G3DSA:3.40.1710.10 20 135 7.0E-6 T 18-10-2018 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 SUPERFAMILY SSF52029 184 376 1.24E-82 T 18-10-2018 IPR027409 GroEL-like apical domain superfamily RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 Gene3D G3DSA:3.50.7.10 173 379 8.9E-236 T 18-10-2018 IPR027409 GroEL-like apical domain superfamily RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 544 41.407 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.5E-96 T 18-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 83 110 8.2E-75 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 398 419 8.2E-75 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 350 375 8.2E-75 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 268 291 8.2E-75 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 27 53 8.2E-75 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 Gene3D G3DSA:1.10.560.10 8 521 8.9E-236 T 18-10-2018 IPR027413 GroEL-like equatorial domain superfamily RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 SUPERFAMILY SSF48592 7 521 5.42E-77 T 18-10-2018 IPR027413 GroEL-like equatorial domain superfamily RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 18-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 1.4E-254 T 18-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 SUPERFAMILY SSF54849 139 203 2.52E-24 T 18-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RU84_19075 e4bfe23eda6b05eff10a1663f9a96968 546 Gene3D G3DSA:3.30.260.10 138 410 8.9E-236 T 18-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 Gene3D G3DSA:1.10.1660.10 1 129 4.7E-29 T 18-10-2018 RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 2.6E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 2.6E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 2.6E-7 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 SUPERFAMILY SSF46955 3 127 4.03E-30 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 Pfam PF13411 MerR HTH family regulatory protein 4 68 6.7E-17 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_12195 cf172517fafdc0d6da0fa47081e405be 133 SMART SM00422 3 72 1.6E-23 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_01515 26d0abd458eadb75182c33064da2f27e 542 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 369 532 8.5E-14 T 18-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal RU84_01515 26d0abd458eadb75182c33064da2f27e 542 Pfam PF15864 Protein glycosylation ligase 153 178 2.2E-10 T 18-10-2018 IPR031726 Protein glycosylation ligase domain RU84_01515 26d0abd458eadb75182c33064da2f27e 542 Pfam PF04932 O-Antigen ligase 192 342 1.8E-16 T 18-10-2018 IPR007016 O-antigen ligase-related RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 26 278 1.4E-105 T 18-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 26 306 39.5 T 18-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 Gene3D G3DSA:3.40.50.620 26 300 3.9E-100 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 SUPERFAMILY SSF52374 26 300 1.56E-80 T 18-10-2018 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 PRINTS PR00987 Glutamyl-tRNA synthetase signature 205 213 4.7E-14 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 PRINTS PR00987 Glutamyl-tRNA synthetase signature 189 199 4.7E-14 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 PRINTS PR00987 Glutamyl-tRNA synthetase signature 58 71 4.7E-14 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 PRINTS PR00987 Glutamyl-tRNA synthetase signature 29 41 4.7E-14 T 18-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 29 256 7.2E-47 T 18-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 RU84_17150 e90e5efa0034f297b1c7a3c002658eeb 310 Gene3D G3DSA:3.40.50.620 101 237 3.9E-100 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_02970 b4e4318919ac684090dec2d77cdd441e 183 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 181 5.5E-73 T 18-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RU84_02970 b4e4318919ac684090dec2d77cdd441e 183 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 178 4.0E-96 T 18-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RU84_02970 b4e4318919ac684090dec2d77cdd441e 183 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 181 5.3E-74 T 18-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 RU84_02970 b4e4318919ac684090dec2d77cdd441e 183 SUPERFAMILY SSF51182 1 182 3.96E-75 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_02970 b4e4318919ac684090dec2d77cdd441e 183 Gene3D G3DSA:2.60.120.10 1 183 1.2E-74 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_14330 46d235aea60a1d4cdedd47a591a4b1f9 245 Gene3D G3DSA:3.60.140.10 17 245 3.2E-68 T 18-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily RU84_14330 46d235aea60a1d4cdedd47a591a4b1f9 245 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 29 245 1.7E-50 T 18-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RU84_14330 46d235aea60a1d4cdedd47a591a4b1f9 245 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 29 243 7.1E-61 T 18-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase RU84_14330 46d235aea60a1d4cdedd47a591a4b1f9 245 SUPERFAMILY SSF64438 27 244 3.3E-66 T 18-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic RU84_08720 a375d3d75f16114b106109ba4e7d29a0 449 TIGRFAM TIGR00937 2A51: chromate efflux transporter 26 443 4.2E-74 T 18-10-2018 IPR014047 Chromate transporter, long chain RU84_08720 a375d3d75f16114b106109ba4e7d29a0 449 Pfam PF02417 Chromate transporter 259 443 7.5E-33 T 18-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 RU84_08720 a375d3d75f16114b106109ba4e7d29a0 449 Pfam PF02417 Chromate transporter 19 183 6.1E-37 T 18-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 RU84_08720 a375d3d75f16114b106109ba4e7d29a0 449 PIRSF PIRSF004810 1 449 8.7E-131 T 18-10-2018 IPR014047 Chromate transporter, long chain RU84_17320 fd1464175c0df5f2c8fbbaf4ac81469e 438 Gene3D G3DSA:2.40.160.10 12 438 6.0E-157 T 18-10-2018 IPR023614 Porin domain superfamily RU84_17320 fd1464175c0df5f2c8fbbaf4ac81469e 438 Pfam PF03573 outer membrane porin, OprD family 30 436 1.1E-108 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_07200 f85fcb4f2d1c4f5abdcd44398bcf34b3 376 Pfam PF02698 DUF218 domain 212 359 3.3E-21 T 18-10-2018 IPR003848 Domain of unknown function DUF218 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 SUPERFAMILY SSF89550 8 254 7.26E-13 T 18-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 Pfam PF14579 Helix-hairpin-helix motif 799 888 4.3E-28 T 18-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 Gene3D G3DSA:3.20.20.140 1 261 2.2E-76 T 18-10-2018 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 283 725 2.1E-165 T 18-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 SMART SM00481 4 71 2.0E-13 T 18-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 988 0.0 T 18-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 SUPERFAMILY SSF160975 823 873 4.32E-5 T 18-10-2018 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 Gene3D G3DSA:1.10.10.1600 428 511 5.4E-25 T 18-10-2018 RU84_09925 31f2acad472d4886a9317f9ea65e3218 1187 Pfam PF02811 PHP domain 6 163 1.0E-24 T 18-10-2018 IPR004013 PHP domain GO:0003824 RU84_05040 355a105329cd892cce1f1ed556f5c68d 212 Pfam PF00849 RNA pseudouridylate synthase 15 163 9.0E-27 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_05040 355a105329cd892cce1f1ed556f5c68d 212 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 52 66 - T 18-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_05040 355a105329cd892cce1f1ed556f5c68d 212 Gene3D G3DSA:3.30.2350.10 5 211 2.5E-63 T 18-10-2018 RU84_05040 355a105329cd892cce1f1ed556f5c68d 212 SUPERFAMILY SSF55120 7 211 2.24E-62 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 Pfam PF00152 tRNA synthetases class II (D, K and N) 13 321 1.4E-40 T 18-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 14 319 1.3E-118 T 18-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 Gene3D G3DSA:3.30.930.10 1 324 7.2E-95 T 18-10-2018 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 PRINTS PR00982 Lysyl-tRNA synthetase signature 206 222 1.2E-12 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 PRINTS PR00982 Lysyl-tRNA synthetase signature 77 90 1.2E-12 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 PRINTS PR00982 Lysyl-tRNA synthetase signature 29 39 1.2E-12 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 PRINTS PR00982 Lysyl-tRNA synthetase signature 95 112 1.2E-12 T 18-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 RU84_04315 454c182d8a5d0d71f264213c7c68d8c5 324 SUPERFAMILY SSF55681 10 321 3.02E-68 T 18-10-2018 RU84_15660 452b8a2474de3f64410af3a3edba98ca 90 Pfam PF11112 Pyocin activator protein PrtN 8 81 4.4E-19 T 18-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 RU84_05280 83be5ecd8fc769e44c85aed7da556d12 467 Gene3D G3DSA:3.40.980.10 194 203 1.8E-19 T 18-10-2018 IPR036425 MoaB/Mog-like domain superfamily RU84_05280 83be5ecd8fc769e44c85aed7da556d12 467 Pfam PF03453 MoeA N-terminal region (domain I and II) 32 186 1.7E-14 T 18-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_05280 83be5ecd8fc769e44c85aed7da556d12 467 SUPERFAMILY SSF63882 32 194 4.58E-19 T 18-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_05280 83be5ecd8fc769e44c85aed7da556d12 467 Gene3D G3DSA:2.170.190.11 56 160 1.8E-19 T 18-10-2018 RU84_05280 83be5ecd8fc769e44c85aed7da556d12 467 Gene3D G3DSA:3.90.105.10 33 193 1.8E-19 T 18-10-2018 RU84_09955 7be956cc33f2409546d4d8d21c446859 173 Pfam PF02417 Chromate transporter 7 169 1.1E-32 T 18-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 RU84_09955 7be956cc33f2409546d4d8d21c446859 173 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 18 32 - T 18-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 RU84_10960 bafcdd3204ff4dc8002104e388221f65 142 Pfam PF00583 Acetyltransferase (GNAT) family 17 83 2.1E-5 T 18-10-2018 IPR000182 GNAT domain RU84_10960 bafcdd3204ff4dc8002104e388221f65 142 Gene3D G3DSA:3.40.630.30 8 124 5.8E-9 T 18-10-2018 RU84_10960 bafcdd3204ff4dc8002104e388221f65 142 SUPERFAMILY SSF55729 1 116 4.4E-14 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 441 61.239 T 18-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 SUPERFAMILY SSF102114 121 367 8.24E-53 T 18-10-2018 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 438 4.4E-104 T 18-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 Pfam PF04055 Radical SAM superfamily 143 320 9.5E-28 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 18-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 SMART SM00729 137 362 3.7E-54 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 Gene3D G3DSA:3.40.50.12160 5 125 1.6E-28 T 18-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 438 1.4E-180 T 18-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 Gene3D G3DSA:3.80.30.20 135 376 4.9E-72 T 18-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 Pfam PF00919 Uncharacterized protein family UPF0004 5 95 8.5E-21 T 18-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 RU84_07445 de8a70e141f49d2ef34846b7f614f86b 447 Gene3D G3DSA:2.40.50.140 377 446 1.9E-19 T 18-10-2018 RU84_07945 6fe5d840ebce80a64f1a3849ee1f533d 241 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 11 42 6.7E-15 T 18-10-2018 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 RU84_07945 6fe5d840ebce80a64f1a3849ee1f533d 241 Pfam PF00775 Dioxygenase 47 229 1.0E-45 T 18-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RU84_07945 6fe5d840ebce80a64f1a3849ee1f533d 241 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 17 238 8.6E-107 T 18-10-2018 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|MetaCyc: PWY-6041 RU84_07945 6fe5d840ebce80a64f1a3849ee1f533d 241 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 81 109 - T 18-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RU84_07945 6fe5d840ebce80a64f1a3849ee1f533d 241 SUPERFAMILY SSF49482 9 238 5.1E-73 T 18-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RU84_07945 6fe5d840ebce80a64f1a3849ee1f533d 241 Gene3D G3DSA:2.60.130.10 1 241 1.0E-101 T 18-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RU84_02620 6846f0c9a3aeecc4f68e5f1efa0f62bf 104 SMART SM00450 2 99 2.8E-11 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_02620 6846f0c9a3aeecc4f68e5f1efa0f62bf 104 SUPERFAMILY SSF52821 14 103 4.32E-19 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_02620 6846f0c9a3aeecc4f68e5f1efa0f62bf 104 Gene3D G3DSA:3.40.250.10 11 104 2.0E-18 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_02620 6846f0c9a3aeecc4f68e5f1efa0f62bf 104 Pfam PF00581 Rhodanese-like domain 16 91 4.6E-9 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_02230 b989f7e84ea3defe7895f2f627dec5bf 230 Pfam PF00881 Nitroreductase family 40 208 3.2E-14 T 18-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RU84_02230 b989f7e84ea3defe7895f2f627dec5bf 230 Gene3D G3DSA:3.40.109.10 33 230 3.0E-83 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_02230 b989f7e84ea3defe7895f2f627dec5bf 230 SUPERFAMILY SSF55469 35 230 2.75E-69 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_02790 1302a6c18937f6f087e42408a75028ae 66 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 27 60 4.1E-8 T 18-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RU84_02790 1302a6c18937f6f087e42408a75028ae 66 Gene3D G3DSA:1.20.120.910 1 65 2.2E-10 T 18-10-2018 RU84_07495 c500f35c57eab6438ee4be3a7274edc7 161 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 16 153 8.4E-56 T 18-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RU84_07495 c500f35c57eab6438ee4be3a7274edc7 161 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 16 157 30.805 T 18-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RU84_07495 c500f35c57eab6438ee4be3a7274edc7 161 SUPERFAMILY SSF54637 16 158 3.55E-45 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_07495 c500f35c57eab6438ee4be3a7274edc7 161 Gene3D G3DSA:3.10.129.10 11 158 9.9E-55 T 18-10-2018 RU84_07495 c500f35c57eab6438ee4be3a7274edc7 161 Pfam PF07977 FabA-like domain 25 149 1.3E-31 T 18-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 RU84_10095 b1bc9ae8f54119a401460e5e0e98056e 133 Pfam PF03817 Malonate transporter MadL subunit 1 116 9.8E-42 T 18-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 RU84_10095 b1bc9ae8f54119a401460e5e0e98056e 133 TIGRFAM TIGR00807 malonate_madL: malonate transporter, MadL subunit 1 127 4.8E-57 T 18-10-2018 IPR004690 Malonate transporter MadL subunit GO:0016020 RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 Gene3D G3DSA:3.40.50.2300 1 123 2.7E-37 T 18-10-2018 RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 Pfam PF00072 Response regulator receiver domain 3 113 2.6E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 Gene3D G3DSA:1.10.10.10 124 219 2.7E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 SUPERFAMILY SSF52172 1 179 1.25E-39 T 18-10-2018 IPR011006 CheY-like superfamily RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 SMART SM00448 1 112 1.1E-36 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 SMART SM00862 145 216 1.2E-23 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_05815 bd0efcfd6d6b39713658f3760d3c3062 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.1E-20 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_00795 ce735b4542826f94ea426c8500311a76 265 SMART SM00849 32 229 1.1E-18 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_00795 ce735b4542826f94ea426c8500311a76 265 Pfam PF00753 Metallo-beta-lactamase superfamily 31 229 2.7E-16 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_00795 ce735b4542826f94ea426c8500311a76 265 SUPERFAMILY SSF56281 30 249 9.52E-32 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_00795 ce735b4542826f94ea426c8500311a76 265 Gene3D G3DSA:3.60.15.10 9 248 6.0E-36 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 Gene3D G3DSA:2.20.28.60 2 52 6.9E-24 T 18-10-2018 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PRINTS PR00143 Citrate synthase signature 167 180 3.3E-55 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PRINTS PR00143 Citrate synthase signature 360 376 3.3E-55 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PRINTS PR00143 Citrate synthase signature 244 272 3.3E-55 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PRINTS PR00143 Citrate synthase signature 297 317 3.3E-55 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PRINTS PR00143 Citrate synthase signature 380 394 3.3E-55 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PRINTS PR00143 Citrate synthase signature 222 237 3.3E-55 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 Gene3D G3DSA:1.10.580.10 59 411 1.4E-145 T 18-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 422 2.4E-242 T 18-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 SUPERFAMILY SSF48256 6 422 5.89E-165 T 18-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 Pfam PF00285 Citrate synthase, C-terminal domain 48 411 2.3E-134 T 18-10-2018 IPR002020 Citrate synthase GO:0046912 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 18-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 PIRSF PIRSF001369 40 424 2.2E-170 T 18-10-2018 IPR024176 Citrate synthase, bacterial-type RU84_03915 80111d3ec4be7d9e17138d6526d1dc2f 424 Gene3D G3DSA:1.10.230.10 271 377 1.4E-145 T 18-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain RU84_14555 9819843023def0a24d2bf4ae5ea9b534 267 Pfam PF01925 Sulfite exporter TauE/SafE 7 259 7.0E-53 T 18-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RU84_08125 52871ed4f70cbc0a7c010321b3b13b9f 306 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 133 161 - T 18-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RU84_08125 52871ed4f70cbc0a7c010321b3b13b9f 306 Pfam PF04444 Catechol dioxygenase N terminus 23 92 1.2E-20 T 18-10-2018 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 RU84_08125 52871ed4f70cbc0a7c010321b3b13b9f 306 SUPERFAMILY SSF49482 15 290 1.7E-83 T 18-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RU84_08125 52871ed4f70cbc0a7c010321b3b13b9f 306 Gene3D G3DSA:2.60.130.10 1 306 8.4E-121 T 18-10-2018 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 RU84_08125 52871ed4f70cbc0a7c010321b3b13b9f 306 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 2 287 2.6E-146 T 18-10-2018 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 RU84_08125 52871ed4f70cbc0a7c010321b3b13b9f 306 Pfam PF00775 Dioxygenase 101 287 2.2E-59 T 18-10-2018 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 Gene3D G3DSA:3.40.190.10 40 185 2.0E-14 T 18-10-2018 RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 SUPERFAMILY SSF53850 52 119 5.43E-8 T 18-10-2018 RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 230 258 - T 18-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 SUPERFAMILY SSF53955 167 360 7.31E-32 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 Pfam PF01464 Transglycosylase SLT domain 213 323 4.3E-21 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 57 119 1.2E-6 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_04210 ae562c3cbdc39e68898fe52fc16a041b 370 Gene3D G3DSA:1.10.530.10 207 369 1.4E-34 T 18-10-2018 RU84_04055 2b1516e85b37917f7e49aaa3cecf236c 107 Gene3D G3DSA:3.30.110.60 2 105 2.8E-30 T 18-10-2018 IPR035920 YhbY-like superfamily RU84_04055 2b1516e85b37917f7e49aaa3cecf236c 107 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 6 94 1.4E-23 T 18-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 RU84_04055 2b1516e85b37917f7e49aaa3cecf236c 107 SUPERFAMILY SSF75471 4 97 1.44E-26 T 18-10-2018 IPR035920 YhbY-like superfamily RU84_04055 2b1516e85b37917f7e49aaa3cecf236c 107 SMART SM01103 4 87 1.5E-36 T 18-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RU84_04055 2b1516e85b37917f7e49aaa3cecf236c 107 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 87 3.3E-19 T 18-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RU84_04055 2b1516e85b37917f7e49aaa3cecf236c 107 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 12 86 8.0E-29 T 18-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 RU84_18355 76a950436e7519a1fb8fec4465edb007 351 SUPERFAMILY SSF55961 144 345 4.89E-26 T 18-10-2018 RU84_18355 76a950436e7519a1fb8fec4465edb007 351 SUPERFAMILY SSF50022 18 136 1.1E-32 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_18355 76a950436e7519a1fb8fec4465edb007 351 Gene3D G3DSA:2.102.10.10 26 158 7.9E-35 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_18355 76a950436e7519a1fb8fec4465edb007 351 Pfam PF00355 Rieske [2Fe-2S] domain 29 113 1.6E-20 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_18355 76a950436e7519a1fb8fec4465edb007 351 Gene3D G3DSA:3.30.530.90 175 348 1.4E-7 T 18-10-2018 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 Hamap MF_01974 Methionine aminopeptidase [map]. 6 254 41.376 T 18-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 Gene3D G3DSA:3.90.230.10 4 256 4.3E-107 T 18-10-2018 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 7 252 2.2E-98 T 18-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 SUPERFAMILY SSF55920 7 257 2.09E-90 T 18-10-2018 IPR036005 Creatinase/aminopeptidase-like RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 171 189 - T 18-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 Pfam PF00557 Metallopeptidase family M24 15 245 8.8E-52 T 18-10-2018 IPR000994 Peptidase M24 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 4.7E-23 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 4.7E-23 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 4.7E-23 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_07660 be3154b1485247f98a4bcea4f58ebd5a 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 72 85 4.7E-23 T 18-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 Pfam PF01409 tRNA synthetases class II core domain (F) 91 325 2.5E-104 T 18-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 SUPERFAMILY SSF55681 91 325 9.4E-82 T 18-10-2018 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 Gene3D G3DSA:3.30.930.10 7 326 4.2E-121 T 18-10-2018 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 7 325 47.244 T 18-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 18 86 1.3E-19 T 18-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 SUPERFAMILY SSF46589 11 98 1.05E-19 T 18-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 RU84_15285 34a60034398a77e6297cbc323fc41c68 326 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 325 2.7E-109 T 18-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 RU84_10420 b9dd3907655d41021fbd6d5078b5f94c 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 8.5E-16 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10420 b9dd3907655d41021fbd6d5078b5f94c 313 Pfam PF03466 LysR substrate binding domain 95 298 3.5E-36 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10420 b9dd3907655d41021fbd6d5078b5f94c 313 SUPERFAMILY SSF46785 11 118 5.44E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10420 b9dd3907655d41021fbd6d5078b5f94c 313 Gene3D G3DSA:1.10.10.10 9 95 9.6E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10420 b9dd3907655d41021fbd6d5078b5f94c 313 Gene3D G3DSA:3.40.190.290 97 300 3.4E-57 T 18-10-2018 RU84_10420 b9dd3907655d41021fbd6d5078b5f94c 313 SUPERFAMILY SSF53850 94 302 1.81E-41 T 18-10-2018 RU84_03830 ee46cd3678f151ba24260b5ae85f75b1 231 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 41 231 1.0E-23 T 18-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 RU84_03830 ee46cd3678f151ba24260b5ae85f75b1 231 Gene3D G3DSA:2.50.20.10 36 231 8.6E-51 T 18-10-2018 RU84_03830 ee46cd3678f151ba24260b5ae85f75b1 231 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 20 231 28.498 T 18-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 RU84_03830 ee46cd3678f151ba24260b5ae85f75b1 231 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 50 221 2.3E-39 T 18-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like RU84_03830 ee46cd3678f151ba24260b5ae85f75b1 231 SUPERFAMILY SSF89392 39 231 1.92E-46 T 18-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RU84_07380 7be55a06ffc60be8970549f06ff962c9 335 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 260 2.5E-40 T 18-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 RU84_07380 7be55a06ffc60be8970549f06ff962c9 335 Gene3D G3DSA:3.90.25.10 193 328 2.5E-90 T 18-10-2018 RU84_07380 7be55a06ffc60be8970549f06ff962c9 335 Gene3D G3DSA:3.40.50.720 2 273 2.5E-90 T 18-10-2018 RU84_07380 7be55a06ffc60be8970549f06ff962c9 335 SUPERFAMILY SSF51735 2 332 6.21E-64 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 126 144 - T 18-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 26 168 2.1E-46 T 18-10-2018 RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 Gene3D G3DSA:1.10.10.1590 16 85 2.1E-15 T 18-10-2018 RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 PIRSF PIRSF000216 5 169 4.2E-49 T 18-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 SUPERFAMILY SSF52833 18 168 1.79E-46 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 24 168 2.1E-46 T 18-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14770 95825814cbbe4d434c2fdedf6871d875 169 Gene3D G3DSA:3.40.30.10 86 168 3.1E-23 T 18-10-2018 RU84_14540 04f1a5ea0b8f06585fa3f4888be4437a 345 SMART SM00771 204 335 2.2E-49 T 18-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 RU84_14540 04f1a5ea0b8f06585fa3f4888be4437a 345 Gene3D G3DSA:3.30.1400.10 202 343 4.0E-35 T 18-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 RU84_14540 04f1a5ea0b8f06585fa3f4888be4437a 345 SUPERFAMILY SSF64383 205 339 1.57E-32 T 18-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 RU84_14540 04f1a5ea0b8f06585fa3f4888be4437a 345 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 206 333 4.6E-31 T 18-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 RU84_14540 04f1a5ea0b8f06585fa3f4888be4437a 345 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 220 343 3.0E-61 T 18-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 RU84_09785 41d9141ddd402d2425d05f0848f9e2ed 297 Gene3D G3DSA:3.40.190.10 27 272 2.6E-92 T 18-10-2018 RU84_09785 41d9141ddd402d2425d05f0848f9e2ed 297 Gene3D G3DSA:3.40.190.10 131 226 2.6E-92 T 18-10-2018 RU84_09785 41d9141ddd402d2425d05f0848f9e2ed 297 SUPERFAMILY SSF53850 1 270 3.24E-60 T 18-10-2018 RU84_09785 41d9141ddd402d2425d05f0848f9e2ed 297 SMART SM00062 38 269 6.4E-54 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_09785 41d9141ddd402d2425d05f0848f9e2ed 297 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 267 8.1E-50 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_11620 1aff57f92f456d2f045cc98d0027586d 556 Gene3D G3DSA:3.50.50.60 177 331 5.1E-29 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11620 1aff57f92f456d2f045cc98d0027586d 556 Gene3D G3DSA:3.50.50.60 441 534 5.6E-23 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11620 1aff57f92f456d2f045cc98d0027586d 556 SUPERFAMILY SSF51905 4 534 6.71E-45 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11620 1aff57f92f456d2f045cc98d0027586d 556 Pfam PF05199 GMC oxidoreductase 469 526 1.9E-17 T 18-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 RU84_11620 1aff57f92f456d2f045cc98d0027586d 556 Pfam PF00732 GMC oxidoreductase 8 284 3.9E-9 T 18-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 RU84_11620 1aff57f92f456d2f045cc98d0027586d 556 Gene3D G3DSA:3.50.50.60 6 176 2.5E-28 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09930 6fce447217316a4013408f95490a2fc2 279 PIRSF PIRSF004808 11 265 3.6E-68 T 18-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 RU84_09930 6fce447217316a4013408f95490a2fc2 279 Gene3D G3DSA:3.40.1280.10 12 178 6.0E-63 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_09930 6fce447217316a4013408f95490a2fc2 279 SUPERFAMILY SSF75217 13 175 4.06E-37 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_09930 6fce447217316a4013408f95490a2fc2 279 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 14 260 7.6E-68 T 18-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 RU84_09930 6fce447217316a4013408f95490a2fc2 279 Pfam PF00588 SpoU rRNA Methylase family 16 166 1.4E-34 T 18-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RU84_09930 6fce447217316a4013408f95490a2fc2 279 Gene3D G3DSA:1.10.8.590 189 276 1.1E-21 T 18-10-2018 RU84_10385 6f4543ed685f8b000504232954647475 564 Gene3D G3DSA:3.40.50.12780 6 448 1.4E-122 T 18-10-2018 RU84_10385 6f4543ed685f8b000504232954647475 564 Pfam PF13193 AMP-binding enzyme C-terminal domain 467 542 5.6E-16 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_10385 6f4543ed685f8b000504232954647475 564 ProSitePatterns PS00455 Putative AMP-binding domain signature. 208 219 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_10385 6f4543ed685f8b000504232954647475 564 SUPERFAMILY SSF56801 16 553 1.06E-154 T 18-10-2018 RU84_10385 6f4543ed685f8b000504232954647475 564 Gene3D G3DSA:3.30.300.30 452 557 1.2E-29 T 18-10-2018 RU84_10385 6f4543ed685f8b000504232954647475 564 Pfam PF00501 AMP-binding enzyme 26 458 2.4E-110 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 363 8.6E-25 T 18-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 Gene3D G3DSA:3.40.710.10 17 271 9.4E-85 T 18-10-2018 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 1.4E-16 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 57 68 1.4E-16 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 1.4E-16 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 SMART SM00936 273 363 3.4E-33 T 18-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 SUPERFAMILY SSF69189 273 365 1.29E-25 T 18-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 24 252 1.1E-77 T 18-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 Gene3D G3DSA:2.60.410.10 273 363 1.8E-29 T 18-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 RU84_05175 d515167a719dbaff94df5c134ea4971b 382 SUPERFAMILY SSF56601 4 273 5.64E-78 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_17090 1a7fa4bf9b6e461aa056943618df7050 379 SUPERFAMILY SSF55874 240 355 1.74E-5 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_17090 1a7fa4bf9b6e461aa056943618df7050 379 Gene3D G3DSA:3.30.565.10 240 371 7.0E-8 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_17090 1a7fa4bf9b6e461aa056943618df7050 379 Pfam PF06580 Histidine kinase 187 264 1.8E-23 T 18-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 RU84_06070 4f2da54836482f1ea942a4f40a3b82d5 585 PIRSF PIRSF029745 5 585 4.5E-180 T 18-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 RU84_06070 4f2da54836482f1ea942a4f40a3b82d5 585 Pfam PF08479 POTRA domain, ShlB-type 87 166 7.4E-19 T 18-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type RU84_06070 4f2da54836482f1ea942a4f40a3b82d5 585 Pfam PF17287 POTRA domain 167 221 2.1E-16 T 18-10-2018 IPR035251 ShlB, POTRA domain RU84_06070 4f2da54836482f1ea942a4f40a3b82d5 585 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 229 547 1.6E-107 T 18-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal RU84_06070 4f2da54836482f1ea942a4f40a3b82d5 585 Gene3D G3DSA:2.40.160.50 198 585 3.1E-106 T 18-10-2018 RU84_06070 4f2da54836482f1ea942a4f40a3b82d5 585 Gene3D G3DSA:3.10.20.310 66 166 7.0E-8 T 18-10-2018 RU84_08960 7bca474dca5eb78520bf87368c4fc2c3 711 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 159 2.6E-14 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_08960 7bca474dca5eb78520bf87368c4fc2c3 711 SUPERFAMILY SSF56935 25 711 1.05E-116 T 18-10-2018 RU84_08960 7bca474dca5eb78520bf87368c4fc2c3 711 Gene3D G3DSA:2.40.170.20 177 711 3.5E-141 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_08960 7bca474dca5eb78520bf87368c4fc2c3 711 Pfam PF00593 TonB dependent receptor 258 710 1.2E-42 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_08960 7bca474dca5eb78520bf87368c4fc2c3 711 Gene3D G3DSA:2.170.130.10 45 176 9.8E-36 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_08960 7bca474dca5eb78520bf87368c4fc2c3 711 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 70 707 1.4E-91 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 18-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 SUPERFAMILY SSF52016 421 607 2.28E-60 T 18-10-2018 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 SUPERFAMILY SSF143975 3 420 1.7E-137 T 18-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 Pfam PF00920 Dehydratase family 34 605 2.5E-224 T 18-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 18-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 608 44.804 T 18-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 1.5E-252 T 18-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_00135 bee3d038de2b8da6c7437ac906248de6 609 Gene3D G3DSA:3.50.30.80 421 572 1.0E-55 T 18-10-2018 RU84_01030 723904406ddf1c6d3367f91691c6e50b 432 SUPERFAMILY SSF51905 2 411 7.59E-39 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_01030 723904406ddf1c6d3367f91691c6e50b 432 Pfam PF01593 Flavin containing amine oxidoreductase 10 265 3.9E-18 T 18-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 RU84_01030 723904406ddf1c6d3367f91691c6e50b 432 Gene3D G3DSA:3.50.50.60 1 281 7.5E-22 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10130 b5253f7590453c32f7508e6c3ac904c3 559 TIGRFAM TIGR01110 mdcA: malonate decarboxylase, alpha subunit 12 559 6.4E-301 T 18-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 RU84_10130 b5253f7590453c32f7508e6c3ac904c3 559 Pfam PF16957 Malonate decarboxylase, alpha subunit, transporter 12 559 1.5E-290 T 18-10-2018 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 RU84_10130 b5253f7590453c32f7508e6c3ac904c3 559 Gene3D G3DSA:3.40.1080.10 39 247 2.0E-16 T 18-10-2018 RU84_10130 b5253f7590453c32f7508e6c3ac904c3 559 SUPERFAMILY SSF100950 231 497 2.75E-20 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_10130 b5253f7590453c32f7508e6c3ac904c3 559 SUPERFAMILY SSF100950 43 283 3.7E-32 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_10775 984f16bb9632ba8ed18da5d7d04735d4 459 Gene3D G3DSA:3.30.1330.90 11 160 1.8E-53 T 18-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RU84_10775 984f16bb9632ba8ed18da5d7d04735d4 459 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 455 3.8E-228 T 18-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RU84_10775 984f16bb9632ba8ed18da5d7d04735d4 459 SUPERFAMILY SSF143548 17 157 2.62E-46 T 18-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 RU84_10775 984f16bb9632ba8ed18da5d7d04735d4 459 Pfam PF03313 Serine dehydratase alpha chain 187 453 1.2E-105 T 18-10-2018 IPR005130 Serine dehydratase-like, alpha subunit RU84_10775 984f16bb9632ba8ed18da5d7d04735d4 459 Pfam PF03315 Serine dehydratase beta chain 4 156 9.6E-58 T 18-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 RU84_11645 e5a225430de4c3c0600e074f1f703faa 395 Pfam PF03573 outer membrane porin, OprD family 32 395 3.8E-36 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_11645 e5a225430de4c3c0600e074f1f703faa 395 Gene3D G3DSA:2.40.160.10 24 395 3.8E-63 T 18-10-2018 IPR023614 Porin domain superfamily RU84_03205 79eefa421b7bb38062c1a45564ec714a 417 Pfam PF04966 Carbohydrate-selective porin, OprB family 75 417 2.2E-85 T 18-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 RU84_03205 79eefa421b7bb38062c1a45564ec714a 417 Gene3D G3DSA:2.40.160.180 30 417 3.4E-124 T 18-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily RU84_00440 d4bb723085d8277655c8061099db7d8b 305 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 304 29.459 T 18-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RU84_00440 d4bb723085d8277655c8061099db7d8b 305 SUPERFAMILY SSF55326 2 136 1.57E-40 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_00440 d4bb723085d8277655c8061099db7d8b 305 PIRSF PIRSF005303 1 304 4.1E-96 T 18-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RU84_00440 d4bb723085d8277655c8061099db7d8b 305 Gene3D G3DSA:3.90.650.10 142 305 2.0E-48 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_00440 d4bb723085d8277655c8061099db7d8b 305 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 135 7.1E-28 T 18-10-2018 IPR016188 PurM-like, N-terminal domain RU84_00440 d4bb723085d8277655c8061099db7d8b 305 Pfam PF02769 AIR synthase related protein, C-terminal domain 185 286 4.8E-5 T 18-10-2018 IPR010918 PurM-like, C-terminal domain RU84_00440 d4bb723085d8277655c8061099db7d8b 305 SUPERFAMILY SSF56042 140 286 1.23E-33 T 18-10-2018 IPR036676 PurM-like, C-terminal domain superfamily RU84_00440 d4bb723085d8277655c8061099db7d8b 305 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 304 1.1E-107 T 18-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 RU84_00440 d4bb723085d8277655c8061099db7d8b 305 Gene3D G3DSA:3.30.1330.10 1 141 1.7E-50 T 18-10-2018 IPR036921 PurM-like, N-terminal domain superfamily RU84_05455 67e42f1772f1a6fe2dc014bc51869e80 268 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 7 263 35.61 T 18-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RU84_05455 67e42f1772f1a6fe2dc014bc51869e80 268 SUPERFAMILY SSF51366 16 263 2.47E-87 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_05455 67e42f1772f1a6fe2dc014bc51869e80 268 Pfam PF00218 Indole-3-glycerol phosphate synthase 9 261 2.0E-99 T 18-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 RU84_05455 67e42f1772f1a6fe2dc014bc51869e80 268 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 18-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 RU84_05455 67e42f1772f1a6fe2dc014bc51869e80 268 Gene3D G3DSA:3.20.20.70 2 267 1.5E-98 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 SUPERFAMILY SSF53623 11 288 1.6E-84 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 Gene3D G3DSA:3.40.1190.10 2 290 6.4E-90 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 TIGRFAM TIGR01499 folC: bifunctional protein FolC 31 423 6.6E-104 T 18-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 Gene3D G3DSA:3.90.190.20 291 425 4.6E-28 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 51 74 - T 18-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 Pfam PF02875 Mur ligase family, glutamate ligase domain 290 346 2.3E-5 T 18-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 PIRSF PIRSF001563 5 428 9.1E-108 T 18-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 SUPERFAMILY SSF53244 291 425 1.19E-25 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_03120 92e0443855dcd45fcb6dd29af0acea23 428 Pfam PF08245 Mur ligase middle domain 53 267 1.5E-16 T 18-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RU84_13140 24354769daec12055a65fe26db24ebcd 637 Pfam PF07819 PGAP1-like protein 360 453 1.0E-5 T 18-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 RU84_13140 24354769daec12055a65fe26db24ebcd 637 Gene3D G3DSA:3.40.50.1820 354 608 6.4E-27 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_13140 24354769daec12055a65fe26db24ebcd 637 SUPERFAMILY SSF53474 356 614 2.52E-21 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17870 771d473c43d66fc1527c8682cde4fca0 233 SUPERFAMILY SSF51735 4 221 6.33E-25 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17870 771d473c43d66fc1527c8682cde4fca0 233 Gene3D G3DSA:3.40.50.720 2 228 1.9E-27 T 18-10-2018 RU84_17870 771d473c43d66fc1527c8682cde4fca0 233 Pfam PF00106 short chain dehydrogenase 4 185 5.5E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_03175 b418483fd9655a8f30e728da21ac2a55 286 Pfam PF01734 Patatin-like phospholipase 9 172 1.7E-14 T 18-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RU84_03175 b418483fd9655a8f30e728da21ac2a55 286 Gene3D G3DSA:3.40.1090.10 2 106 2.2E-9 T 18-10-2018 RU84_03175 b418483fd9655a8f30e728da21ac2a55 286 SUPERFAMILY SSF52151 6 283 1.73E-34 T 18-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 223 1.7E-23 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 SUPERFAMILY SSF46894 122 225 3.12E-25 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 SMART SM00862 144 223 7.9E-24 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 Pfam PF00072 Response regulator receiver domain 4 113 9.1E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 Gene3D G3DSA:1.10.10.10 121 225 7.4E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 SMART SM00448 2 112 3.1E-41 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 SUPERFAMILY SSF52172 1 126 2.85E-41 T 18-10-2018 IPR011006 CheY-like superfamily RU84_03045 5e9c764d93c6123d25c69cc2666f2d40 228 Gene3D G3DSA:3.40.50.2300 1 120 5.3E-37 T 18-10-2018 RU84_12505 dbca125a3017758e6235c4dc79f36993 293 Gene3D G3DSA:1.10.10.10 9 91 2.8E-12 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_12505 dbca125a3017758e6235c4dc79f36993 293 Pfam PF04492 Bacteriophage replication protein O 12 81 1.2E-9 T 18-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 RU84_06155 24a8ad2a0944796069a95beb41c3b000 199 SUPERFAMILY SSF53335 6 154 3.04E-28 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_06155 24a8ad2a0944796069a95beb41c3b000 199 Gene3D G3DSA:3.40.50.150 24 187 1.0E-41 T 18-10-2018 RU84_06155 24a8ad2a0944796069a95beb41c3b000 199 Pfam PF05401 Nodulation protein S (NodS) 15 142 3.0E-18 T 18-10-2018 IPR008715 SAM-dependent methyltransferase, NodS-related GO:0008757|GO:0009312|GO:0009877 RU84_03490 ffb33e08b6282bbdcc62b6de356e14a0 404 Pfam PF07690 Major Facilitator Superfamily 18 361 4.6E-41 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_03490 ffb33e08b6282bbdcc62b6de356e14a0 404 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 14 390 5.0E-88 T 18-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RU84_03490 ffb33e08b6282bbdcc62b6de356e14a0 404 Gene3D G3DSA:1.20.1720.10 14 394 2.5E-103 T 18-10-2018 RU84_03490 ffb33e08b6282bbdcc62b6de356e14a0 404 SUPERFAMILY SSF103473 8 399 8.89E-58 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 Gene3D G3DSA:3.40.50.12370 2 283 1.4E-63 T 18-10-2018 RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 SUPERFAMILY SSF52402 163 283 1.42E-20 T 18-10-2018 RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 SUPERFAMILY SSF52402 1 155 1.26E-15 T 18-10-2018 RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 PRINTS PR01438 Universal stress protein signature 243 255 9.1E-10 T 18-10-2018 IPR006015 Universal stress protein A RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 PRINTS PR01438 Universal stress protein signature 261 283 9.1E-10 T 18-10-2018 IPR006015 Universal stress protein A RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 PRINTS PR01438 Universal stress protein signature 1 11 9.1E-10 T 18-10-2018 IPR006015 Universal stress protein A RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 Pfam PF00582 Universal stress protein family 2 156 5.0E-11 T 18-10-2018 IPR006016 UspA RU84_19335 d9e0722befb821e95e9481e0e1d00a10 283 Pfam PF00582 Universal stress protein family 211 283 5.1E-13 T 18-10-2018 IPR006016 UspA RU84_08680 51e3b8c5a085d5e4a7704d7df9871153 93 Pfam PF06155 Protein of unknown function (DUF971) 7 87 1.8E-15 T 18-10-2018 IPR010376 Gamma-butyrobetaine hydroxylase-like, N-terminal Reactome: R-HSA-71262 RU84_08680 51e3b8c5a085d5e4a7704d7df9871153 93 Gene3D G3DSA:3.30.2020.30 1 92 4.5E-19 T 18-10-2018 IPR038492 GBBH-like, N-terminal domain superfamily Reactome: R-HSA-71262 RU84_03260 c22c6fdda5e0eb7c1220165c8f8e418a 486 PIRSF PIRSF006060 1 483 3.1E-82 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_03260 c22c6fdda5e0eb7c1220165c8f8e418a 486 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_03260 c22c6fdda5e0eb7c1220165c8f8e418a 486 Gene3D G3DSA:1.20.1740.10 8 479 2.5E-61 T 18-10-2018 RU84_03260 c22c6fdda5e0eb7c1220165c8f8e418a 486 Pfam PF00324 Amino acid permease 18 472 2.1E-138 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_11190 3b3a272fd048a18f518dd69f2935682c 181 SUPERFAMILY SSF53955 1 179 2.17E-42 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_11190 3b3a272fd048a18f518dd69f2935682c 181 Pfam PF09374 Predicted Peptidoglycan domain 97 178 9.0E-15 T 18-10-2018 IPR018537 Peptidoglycan binding domain RU84_11190 3b3a272fd048a18f518dd69f2935682c 181 Pfam PF05838 Glycosyl hydrolase 108 8 90 2.0E-23 T 18-10-2018 IPR008565 Protein of unknown function DUF847 RU84_11190 3b3a272fd048a18f518dd69f2935682c 181 Gene3D G3DSA:1.20.141.10 2 181 2.7E-38 T 18-10-2018 RU84_08575 80c3955d88f5cb943da650b2a2357630 304 Gene3D G3DSA:3.40.50.1820 17 281 1.4E-51 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08575 80c3955d88f5cb943da650b2a2357630 304 SUPERFAMILY SSF53474 12 300 1.34E-49 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08575 80c3955d88f5cb943da650b2a2357630 304 Gene3D G3DSA:1.10.10.800 147 230 1.4E-51 T 18-10-2018 RU84_08575 80c3955d88f5cb943da650b2a2357630 304 Pfam PF12146 Serine aminopeptidase, S33 38 276 1.7E-14 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_18865 b392476ff328d89b0f602e942b3bf17c 140 SUPERFAMILY SSF52833 42 135 2.53E-12 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_18865 b392476ff328d89b0f602e942b3bf17c 140 Pfam PF00085 Thioredoxin 47 125 1.5E-6 T 18-10-2018 IPR013766 Thioredoxin domain GO:0045454 RU84_18865 b392476ff328d89b0f602e942b3bf17c 140 Gene3D G3DSA:3.40.30.10 32 138 4.9E-10 T 18-10-2018 RU84_02500 fa0abc8e5307b3dba02dd03bfcc7479a 279 SUPERFAMILY SSF56300 7 267 8.7E-49 T 18-10-2018 RU84_02500 fa0abc8e5307b3dba02dd03bfcc7479a 279 PIRSF PIRSF000903 4 278 8.7E-93 T 18-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RU84_02500 fa0abc8e5307b3dba02dd03bfcc7479a 279 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 6 275 9.8E-82 T 18-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 RU84_02500 fa0abc8e5307b3dba02dd03bfcc7479a 279 Gene3D G3DSA:3.60.21.10 6 278 8.9E-65 T 18-10-2018 IPR029052 Metallo-dependent phosphatase-like RU84_02500 fa0abc8e5307b3dba02dd03bfcc7479a 279 Pfam PF00149 Calcineurin-like phosphoesterase 8 132 2.1E-13 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 Gene3D G3DSA:1.10.40.30 413 462 2.4E-16 T 18-10-2018 RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 PRINTS PR00149 Fumarate lyase superfamily signature 184 202 2.1E-28 T 18-10-2018 IPR000362 Fumarate lyase family RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 2.1E-28 T 18-10-2018 IPR000362 Fumarate lyase family RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 2.1E-28 T 18-10-2018 IPR000362 Fumarate lyase family RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 PRINTS PR00149 Fumarate lyase superfamily signature 139 157 2.1E-28 T 18-10-2018 IPR000362 Fumarate lyase family RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 SUPERFAMILY SSF48557 7 465 8.01E-132 T 18-10-2018 IPR008948 L-Aspartase-like GO:0003824 RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 Pfam PF10415 Fumarase C C-terminus 413 465 6.2E-16 T 18-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 Gene3D G3DSA:1.20.200.10 144 411 1.5E-102 T 18-10-2018 RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 Gene3D G3DSA:1.10.275.10 5 143 1.4E-54 T 18-10-2018 IPR024083 Fumarase/histidase, N-terminal RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 18-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RU84_08665 951e4b2783991e3e70350ac79556ebd4 471 Pfam PF00206 Lyase 16 346 4.2E-92 T 18-10-2018 IPR022761 Fumarate lyase, N-terminal RU84_07505 2dfb48de14adb0f019497e07555046f3 294 SUPERFAMILY SSF48452 176 290 1.52E-5 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_07505 2dfb48de14adb0f019497e07555046f3 294 Pfam PF16331 TolA binding protein trimerisation 50 103 1.1E-10 T 18-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 RU84_07505 2dfb48de14adb0f019497e07555046f3 294 Gene3D G3DSA:1.25.40.10 175 293 6.4E-18 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_07505 2dfb48de14adb0f019497e07555046f3 294 Pfam PF13174 Tetratricopeptide repeat 181 209 0.023 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_07505 2dfb48de14adb0f019497e07555046f3 294 Pfam PF13174 Tetratricopeptide repeat 215 248 0.039 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 Gene3D G3DSA:3.50.50.100 1 409 2.8E-109 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 8.1E-12 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 8.1E-12 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 8.1E-12 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 8.1E-12 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 4.0E-6 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 4.0E-6 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 4.0E-6 T 18-10-2018 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 337 6.1E-52 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_04940 a8f980becc83cbb09c860e2a5e42216d 428 SUPERFAMILY SSF51905 6 346 1.75E-27 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 Gene3D G3DSA:2.40.50.100 70 214 1.5E-104 T 18-10-2018 RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 69 297 1.6E-14 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 Gene3D G3DSA:2.40.420.20 309 378 1.5E-104 T 18-10-2018 RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 Gene3D G3DSA:2.40.30.170 57 308 1.5E-104 T 18-10-2018 RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 380 2.3E-82 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 SUPERFAMILY SSF111369 59 305 2.62E-79 T 18-10-2018 RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 Pfam PF00529 HlyD membrane-fusion protein of T1SS 298 365 1.1E-7 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_03795 b743742b80f47e92ce4c7593a61e025b 416 Gene3D G3DSA:1.10.287.470 105 178 1.5E-104 T 18-10-2018 RU84_08250 a248d9ffdebc78930954b6930018b322 303 Pfam PF00106 short chain dehydrogenase 9 197 1.8E-47 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 3.5E-24 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.5E-24 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 3.5E-24 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 3.5E-24 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 3.5E-24 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 4.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 4.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 4.5E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_08250 a248d9ffdebc78930954b6930018b322 303 Gene3D G3DSA:3.40.50.720 8 298 3.6E-75 T 18-10-2018 RU84_08250 a248d9ffdebc78930954b6930018b322 303 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_08250 a248d9ffdebc78930954b6930018b322 303 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 204 5.6E-6 T 18-10-2018 RU84_08250 a248d9ffdebc78930954b6930018b322 303 SUPERFAMILY SSF51735 1 242 6.15E-67 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10755 598fa1b38d49fded78334577e41b38e4 251 Gene3D G3DSA:1.20.1260.10 1 251 2.0E-93 T 18-10-2018 IPR012347 Ferritin-like RU84_10755 598fa1b38d49fded78334577e41b38e4 251 SUPERFAMILY SSF47240 5 245 1.3E-76 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_10755 598fa1b38d49fded78334577e41b38e4 251 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 14 251 1.2E-90 T 18-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 RU84_10755 598fa1b38d49fded78334577e41b38e4 251 PIRSF PIRSF037834 1 251 6.2E-91 T 18-10-2018 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 RU84_10755 598fa1b38d49fded78334577e41b38e4 251 Pfam PF05138 Phenylacetic acid catabolic protein 5 251 1.2E-85 T 18-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 RU84_08985 5118020bb8d9f6efa7440cfda6727764 362 SUPERFAMILY SSF51569 15 356 1.28E-133 T 18-10-2018 RU84_08985 5118020bb8d9f6efa7440cfda6727764 362 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 14 357 4.8E-153 T 18-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RU84_08985 5118020bb8d9f6efa7440cfda6727764 362 Pfam PF00793 DAHP synthetase I family 52 347 2.8E-95 T 18-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_08985 5118020bb8d9f6efa7440cfda6727764 362 Gene3D G3DSA:3.20.20.70 10 358 6.6E-153 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_08985 5118020bb8d9f6efa7440cfda6727764 362 PIRSF PIRSF001361 1 362 3.9E-159 T 18-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 52 71 - T 18-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 SMART SM00411 6 96 5.0E-37 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 Gene3D G3DSA:4.10.520.10 6 99 9.4E-32 T 18-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 PRINTS PR01727 Prokaryotic integration host factor signature 46 61 2.1E-18 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 PRINTS PR01727 Prokaryotic integration host factor signature 80 94 2.1E-18 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 PRINTS PR01727 Prokaryotic integration host factor signature 64 77 2.1E-18 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 SUPERFAMILY SSF47729 6 96 5.15E-28 T 18-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 7 98 5.0E-39 T 18-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 RU84_09330 f74fa26c5e15e9b6f22ca8ee71dc69c5 100 Pfam PF00216 Bacterial DNA-binding protein 6 96 1.1E-27 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_17780 574c7186e1d0b268794af05503905ac9 257 Gene3D G3DSA:1.10.12.10 200 256 1.1E-25 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_17780 574c7186e1d0b268794af05503905ac9 257 SUPERFAMILY SSF52096 1 256 2.7E-89 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_17780 574c7186e1d0b268794af05503905ac9 257 Gene3D G3DSA:3.90.226.10 2 199 1.7E-75 T 18-10-2018 RU84_17780 574c7186e1d0b268794af05503905ac9 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 257 4.5E-86 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_17780 574c7186e1d0b268794af05503905ac9 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_06520 202befcf2b60f058d60c541ccd94f9ad 244 Pfam PF00227 Proteasome subunit 4 173 2.6E-7 T 18-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 RU84_06520 202befcf2b60f058d60c541ccd94f9ad 244 SUPERFAMILY SSF56235 2 238 2.72E-34 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_06520 202befcf2b60f058d60c541ccd94f9ad 244 Gene3D G3DSA:3.60.20.10 2 235 4.4E-25 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_06520 202befcf2b60f058d60c541ccd94f9ad 244 PIRSF PIRSF009120 1 243 8.0E-106 T 18-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 RU84_06195 37acde206baa024f79522bd82a7bc51c 411 Pfam PF03616 Sodium/glutamate symporter 5 379 2.4E-138 T 18-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 RU84_06195 37acde206baa024f79522bd82a7bc51c 411 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 5 410 7.8E-151 T 18-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 RU84_06195 37acde206baa024f79522bd82a7bc51c 411 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 410 24.896 T 18-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 Gene3D G3DSA:1.10.10.10 126 223 1.3E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 SUPERFAMILY SSF52172 1 176 3.42E-38 T 18-10-2018 IPR011006 CheY-like superfamily RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 SMART SM00448 2 112 3.9E-38 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 221 1.1E-19 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 Pfam PF00072 Response regulator receiver domain 4 112 1.5E-26 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 SMART SM00862 150 221 2.2E-21 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_03715 3ec960100d64f6a4b2687f1e68fa457a 224 Gene3D G3DSA:3.40.50.2300 1 122 2.3E-35 T 18-10-2018 RU84_07820 c4172463c366b69c2e10b1767f90f843 137 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 48 131 27.569 T 18-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS RU84_07820 c4172463c366b69c2e10b1767f90f843 137 SUPERFAMILY SSF54736 51 135 6.28E-31 T 18-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RU84_07820 c4172463c366b69c2e10b1767f90f843 137 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 53 131 1.9E-32 T 18-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 RU84_07820 c4172463c366b69c2e10b1767f90f843 137 Gene3D G3DSA:3.30.1390.10 31 137 4.0E-40 T 18-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like RU84_15370 b370515c3fa1927068d8352bd0c26c71 160 SUPERFAMILY SSF55083 4 147 4.45E-47 T 18-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_15370 b370515c3fa1927068d8352bd0c26c71 160 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 86 97 - T 18-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_15370 b370515c3fa1927068d8352bd0c26c71 160 Gene3D G3DSA:3.30.70.560 2 153 8.5E-50 T 18-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_15370 b370515c3fa1927068d8352bd0c26c71 160 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 130 1.8E-35 T 18-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_15370 b370515c3fa1927068d8352bd0c26c71 160 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 130 1.1E-40 T 18-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 RU84_10505 3aa8763a1601bdfbc617c9df2b493d11 323 SUPERFAMILY SSF51412 1 315 1.31E-70 T 18-10-2018 RU84_10505 3aa8763a1601bdfbc617c9df2b493d11 323 Pfam PF03060 Nitronate monooxygenase 3 310 1.4E-62 T 18-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RU84_10505 3aa8763a1601bdfbc617c9df2b493d11 323 Gene3D G3DSA:3.20.20.70 1 323 4.0E-117 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_13455 973f81f7ad497071c47a8380758c0dce 314 Pfam PF07751 Abi-like protein 26 200 8.9E-12 T 18-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 Gene3D G3DSA:3.40.50.970 1 180 1.0E-70 T 18-10-2018 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 Gene3D G3DSA:3.40.50.1220 188 345 3.8E-38 T 18-10-2018 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 SUPERFAMILY SSF52518 5 179 5.89E-39 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 Gene3D G3DSA:3.40.50.970 350 543 2.0E-58 T 18-10-2018 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 PIRSF PIRSF036565 1 549 1.2E-193 T 18-10-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 SUPERFAMILY SSF52467 180 339 2.22E-26 T 18-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 175 4.5E-32 T 18-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 SUPERFAMILY SSF52518 359 541 5.5E-43 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 307 8.0E-19 T 18-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 526 1.3E-19 T 18-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 RU84_05105 9e11a234518c6950c2878c7564a6d8ed 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 18-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 205 219 2.8E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 2.8E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 2.8E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 105 2.8E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 Gene3D G3DSA:3.40.50.1820 3 260 1.6E-61 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 18 259 5.3E-84 T 18-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 SUPERFAMILY SSF53474 9 259 6.08E-58 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07930 0dd7fb9b5bab40b0288a2ecb4d474c31 261 Pfam PF00561 alpha/beta hydrolase fold 24 245 8.9E-22 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_19185 28a478d9d66b82ab78417ec30a489832 245 Gene3D G3DSA:2.60.40.2500 140 241 4.8E-19 T 18-10-2018 IPR038161 VirB9/CagX/TrbG, C-terminal domain superfamily RU84_19185 28a478d9d66b82ab78417ec30a489832 245 Pfam PF03524 Conjugal transfer protein 33 237 5.4E-47 T 18-10-2018 IPR010258 Conjugal transfer, TrbG/VirB9/CagX RU84_14465 dc9842d2873404ccda1161274263df46 220 Pfam PF04315 Elongation factor P hydroxylase 53 214 2.7E-61 T 18-10-2018 IPR007411 Elongation factor P hydroxylase RU84_09585 56d69c9f14d66af5770c7039c4856511 196 Pfam PF04970 Lecithin retinol acyltransferase 9 107 1.2E-15 T 18-10-2018 IPR007053 LRAT-like domain RU84_07905 ec8701de00cbc3c437949ead4e7d6dbd 238 Gene3D G3DSA:3.90.550.10 6 237 2.8E-67 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_07905 ec8701de00cbc3c437949ead4e7d6dbd 238 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 110 117 - T 18-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RU84_07905 ec8701de00cbc3c437949ead4e7d6dbd 238 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 14 234 4.6E-67 T 18-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RU84_07905 ec8701de00cbc3c437949ead4e7d6dbd 238 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 14 235 1.2E-63 T 18-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RU84_07905 ec8701de00cbc3c437949ead4e7d6dbd 238 SUPERFAMILY SSF53448 13 235 1.64E-52 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_07905 ec8701de00cbc3c437949ead4e7d6dbd 238 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 12 234 39.401 T 18-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 RU84_02885 80a2e6cff4aa1165421eef17fc24d142 69 Gene3D G3DSA:3.10.350.10 1 69 1.1E-29 T 18-10-2018 IPR036779 LysM domain superfamily RU84_02885 80a2e6cff4aa1165421eef17fc24d142 69 Pfam PF05489 Phage Tail Protein X 3 59 3.5E-26 T 18-10-2018 IPR008861 Phage Tail Protein X-like RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 Gene3D G3DSA:3.40.50.300 2 195 1.3E-44 T 18-10-2018 RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 Pfam PF07670 Nucleoside recognition 447 581 6.7E-24 T 18-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 Pfam PF07670 Nucleoside recognition 281 370 6.9E-13 T 18-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 1.8E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 6 26 1.8E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 SUPERFAMILY SSF52540 5 168 3.73E-36 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 Pfam PF07664 Ferrous iron transport protein B C terminus 390 442 5.7E-14 T 18-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 RU84_15545 10d53d5c1e9863572ebff15c96eaa8f2 609 Pfam PF02421 Ferrous iron transport protein B 5 164 6.2E-56 T 18-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 Pfam PF13522 Glutamine amidotransferase domain 65 208 6.3E-16 T 18-10-2018 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 467 44.669 T 18-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 PIRSF PIRSF000485 1 484 2.0E-163 T 18-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 Pfam PF00156 Phosphoribosyl transferase domain 276 395 8.4E-10 T 18-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 Gene3D G3DSA:3.60.20.10 2 468 3.3E-149 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 SUPERFAMILY SSF53271 251 486 6.29E-71 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 Gene3D G3DSA:3.40.50.2020 276 446 3.3E-149 T 18-10-2018 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 467 3.8E-156 T 18-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 RU84_05990 0ba795834e72d32da6ba245a127cbf66 513 SUPERFAMILY SSF56235 2 258 3.77E-71 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_03800 c044baedf6fae98880bc0a5eb6653e57 208 SUPERFAMILY SSF48317 5 200 1.18E-33 T 18-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RU84_03800 c044baedf6fae98880bc0a5eb6653e57 208 SMART SM00014 79 191 3.3E-16 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_03800 c044baedf6fae98880bc0a5eb6653e57 208 Pfam PF01569 PAP2 superfamily 82 195 9.6E-20 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_03800 c044baedf6fae98880bc0a5eb6653e57 208 Gene3D G3DSA:1.20.144.10 109 206 1.7E-21 T 18-10-2018 RU84_03800 c044baedf6fae98880bc0a5eb6653e57 208 Gene3D G3DSA:1.20.144.10 7 108 5.9E-7 T 18-10-2018 RU84_12250 b704d311115bfd914608a704bec2719e 211 Pfam PF02586 SOS response associated peptidase (SRAP) 26 188 2.8E-22 T 18-10-2018 IPR003738 SOS response associated peptidase (SRAP) RU84_12250 b704d311115bfd914608a704bec2719e 211 Gene3D G3DSA:3.90.1680.10 1 207 1.6E-53 T 18-10-2018 IPR036590 SOS response associated peptidase-like RU84_12250 b704d311115bfd914608a704bec2719e 211 SUPERFAMILY SSF143081 15 200 6.54E-48 T 18-10-2018 IPR036590 SOS response associated peptidase-like RU84_11995 bc30efd4ecf0c4b9a15b51c61a74fee1 346 Pfam PF06067 Domain of unknown function (DUF932) 77 326 2.3E-76 T 18-10-2018 IPR026325 Protein of unknown function DUF932 RU84_11995 bc30efd4ecf0c4b9a15b51c61a74fee1 346 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 342 2.4E-116 T 18-10-2018 IPR017686 Phage/plasmid-like protein RU84_07940 92e5c1d7008233688bddd3242e33cb4a 137 Gene3D G3DSA:1.20.1290.10 4 125 3.5E-41 T 18-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RU84_07940 92e5c1d7008233688bddd3242e33cb4a 137 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 4 124 7.1E-51 T 18-10-2018 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44 RU84_07940 92e5c1d7008233688bddd3242e33cb4a 137 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 119 1.5E-24 T 18-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RU84_07940 92e5c1d7008233688bddd3242e33cb4a 137 SUPERFAMILY SSF69118 4 131 6.02E-38 T 18-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 7.5E-61 T 18-10-2018 RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 Gene3D G3DSA:3.40.50.720 1 244 3.5E-70 T 18-10-2018 RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.2E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 2.2E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.2E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.2E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.2E-33 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 SUPERFAMILY SSF51735 6 244 1.82E-72 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 1.1E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 1.1E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.1E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10195 52b695085496ac8f8c47018cc8a05e5e 245 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 184 0.0039 T 18-10-2018 RU84_04570 fe78d7ea8ba4ea63ae6ef1c4c46291a1 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 113 1.5E-25 T 18-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RU84_04570 fe78d7ea8ba4ea63ae6ef1c4c46291a1 135 Pfam PF03061 Thioesterase superfamily 19 101 2.6E-15 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_04570 fe78d7ea8ba4ea63ae6ef1c4c46291a1 135 PIRSF PIRSF003230 1 135 1.5E-51 T 18-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 RU84_04570 fe78d7ea8ba4ea63ae6ef1c4c46291a1 135 Gene3D G3DSA:3.10.129.10 1 130 1.5E-39 T 18-10-2018 RU84_04570 fe78d7ea8ba4ea63ae6ef1c4c46291a1 135 SUPERFAMILY SSF54637 2 129 1.94E-37 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_04570 fe78d7ea8ba4ea63ae6ef1c4c46291a1 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 5 126 2.0E-45 T 18-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 RU84_16000 7f11f5d5e395f458b7388ade1aca4320 197 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 195 2.3E-79 T 18-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 RU84_16000 7f11f5d5e395f458b7388ade1aca4320 197 SUPERFAMILY SSF53335 9 171 2.41E-29 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_16000 7f11f5d5e395f458b7388ade1aca4320 197 Gene3D G3DSA:3.40.50.150 2 173 1.6E-26 T 18-10-2018 RU84_16000 7f11f5d5e395f458b7388ade1aca4320 197 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 9.0E-76 T 18-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 RU84_15540 595f86c864ec450d31767b5d34f89836 86 Gene3D G3DSA:2.30.30.90 1 86 1.0E-20 T 18-10-2018 IPR038157 Ferrous iron transporter, core domain RU84_15540 595f86c864ec450d31767b5d34f89836 86 SUPERFAMILY SSF50037 5 82 9.16E-13 T 18-10-2018 IPR008988 Transcriptional repressor, C-terminal RU84_15540 595f86c864ec450d31767b5d34f89836 86 Pfam PF04023 FeoA domain 1 80 3.4E-15 T 18-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RU84_15540 595f86c864ec450d31767b5d34f89836 86 SMART SM00899 1 81 1.6E-15 T 18-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 RU84_11580 449aeb265fd7ffcb0ee8daaf63e16b53 319 PIRSF PIRSF007580 22 303 1.2E-50 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_11580 449aeb265fd7ffcb0ee8daaf63e16b53 319 Pfam PF10118 Predicted metal-dependent hydrolase 33 285 9.4E-65 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_08490 0da4203f477ecc6fb34f0eea2901713a 515 Gene3D G3DSA:1.20.1720.10 19 199 1.7E-33 T 18-10-2018 RU84_08490 0da4203f477ecc6fb34f0eea2901713a 515 SUPERFAMILY SSF103473 7 510 2.62E-59 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_08490 0da4203f477ecc6fb34f0eea2901713a 515 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 506 4.6E-112 T 18-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RU84_08490 0da4203f477ecc6fb34f0eea2901713a 515 Gene3D G3DSA:1.20.1250.20 267 513 5.4E-16 T 18-10-2018 RU84_08490 0da4203f477ecc6fb34f0eea2901713a 515 Pfam PF07690 Major Facilitator Superfamily 20 417 7.6E-42 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_15630 5ec5125c75898e20c6c6092018eebb80 355 SUPERFAMILY SSF46565 278 349 4.97E-11 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_15630 5ec5125c75898e20c6c6092018eebb80 355 Gene3D G3DSA:1.10.287.110 286 351 7.8E-11 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_15630 5ec5125c75898e20c6c6092018eebb80 355 SMART SM00271 289 353 0.0068 T 18-10-2018 IPR001623 DnaJ domain RU84_07845 5f60c6d6e777751655a707e9e04b700b 186 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 7.5E-10 T 18-10-2018 IPR005149 Transcription regulator PadR, N-terminal RU84_07845 5f60c6d6e777751655a707e9e04b700b 186 Pfam PF10400 Virulence activator alpha C-term 91 175 6.8E-19 T 18-10-2018 IPR018309 Transcription regulator PadR, C-terminal RU84_07845 5f60c6d6e777751655a707e9e04b700b 186 Gene3D G3DSA:1.10.10.10 1 88 1.3E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07845 5f60c6d6e777751655a707e9e04b700b 186 SUPERFAMILY SSF46785 3 176 2.47E-35 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 Gene3D G3DSA:3.40.50.850 1 209 1.4E-74 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 SUPERFAMILY SSF47336 216 284 6.41E-9 T 18-10-2018 IPR036736 ACP-like superfamily RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PIRSF PIRSF001111 1 288 1.9E-132 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PRINTS PR01398 Isochorismatase signature 2 14 4.2E-45 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PRINTS PR01398 Isochorismatase signature 113 135 4.2E-45 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PRINTS PR01398 Isochorismatase signature 63 80 4.2E-45 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PRINTS PR01398 Isochorismatase signature 187 204 4.2E-45 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PRINTS PR01398 Isochorismatase signature 169 187 4.2E-45 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 PRINTS PR01398 Isochorismatase signature 80 99 4.2E-45 T 18-10-2018 IPR016291 Isochorismatase GO:0008908 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 Pfam PF00550 Phosphopantetheine attachment site 220 276 2.1E-7 T 18-10-2018 IPR009081 Phosphopantetheine binding ACP domain RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 SUPERFAMILY SSF52499 1 225 1.18E-60 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 Pfam PF00857 Isochorismatase family 32 205 2.9E-31 T 18-10-2018 IPR000868 Isochorismatase-like GO:0003824 RU84_05360 8653b9f2e06ab09763f740eea6f8f8e6 289 Gene3D G3DSA:1.10.1200.10 215 285 1.1E-18 T 18-10-2018 IPR036736 ACP-like superfamily RU84_04765 1936a847747009ec61cde3dde32846a4 241 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 5 237 1.5E-102 T 18-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RU84_04765 1936a847747009ec61cde3dde32846a4 241 Gene3D G3DSA:3.20.20.70 1 241 1.3E-105 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_04765 1936a847747009ec61cde3dde32846a4 241 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 241 128.071 T 18-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RU84_04765 1936a847747009ec61cde3dde32846a4 241 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 5 238 5.5E-97 T 18-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RU84_04765 1936a847747009ec61cde3dde32846a4 241 SUPERFAMILY SSF63892 3 238 9.29E-99 T 18-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 RU84_01615 07c176640c7cc6fcfd823df3659be7ee 343 SUPERFAMILY SSF158855 60 334 6.41E-86 T 18-10-2018 RU84_01615 07c176640c7cc6fcfd823df3659be7ee 343 Hamap MF_00790 Lipase chaperone [lifO]. 5 331 19.508 T 18-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 RU84_01615 07c176640c7cc6fcfd823df3659be7ee 343 Pfam PF03280 Proteobacterial lipase chaperone protein 132 322 1.7E-49 T 18-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 RU84_00340 ea313837091a13641829f38cb71d0deb 182 SUPERFAMILY SSF54593 2 140 6.85E-37 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_00340 ea313837091a13641829f38cb71d0deb 182 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 136 4.0E-18 T 18-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RU84_00340 ea313837091a13641829f38cb71d0deb 182 Gene3D G3DSA:3.10.180.10 1 175 1.2E-36 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_00340 ea313837091a13641829f38cb71d0deb 182 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 116 135 - T 18-10-2018 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 RU84_12055 201ad97347be000d07f9895b5062e430 220 Pfam PF14103 Domain of unknown function (DUF4276) 8 215 1.1E-45 T 18-10-2018 IPR025455 Protein of unknown function DUF4276 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 Gene3D G3DSA:3.30.420.40 157 320 4.1E-126 T 18-10-2018 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 Pfam PF06723 MreB/Mbl protein 13 337 1.4E-140 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 SUPERFAMILY SSF53067 10 151 2.59E-36 T 18-10-2018 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 Gene3D G3DSA:3.30.420.40 14 330 4.1E-126 T 18-10-2018 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 337 3.3E-146 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 SUPERFAMILY SSF53067 153 337 4.05E-48 T 18-10-2018 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 Gene3D G3DSA:3.90.640.10 189 262 4.1E-126 T 18-10-2018 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 3.2E-60 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 3.2E-60 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 3.2E-60 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 3.2E-60 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_03565 87cd53bc3f5bfe9b536fa193f50f8bc0 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 3.2E-60 T 18-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 RU84_05955 c765478b7be53e8c012294eb78e5074d 191 PIRSF PIRSF000232 5 191 9.8E-64 T 18-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like RU84_05955 c765478b7be53e8c012294eb78e5074d 191 Pfam PF00881 Nitroreductase family 13 168 7.2E-23 T 18-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RU84_05955 c765478b7be53e8c012294eb78e5074d 191 Gene3D G3DSA:3.40.109.10 9 188 7.3E-36 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_05955 c765478b7be53e8c012294eb78e5074d 191 SUPERFAMILY SSF55469 11 187 4.58E-30 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Gene3D G3DSA:3.30.530.20 1 149 6.7E-22 T 18-10-2018 IPR023393 START-like domain superfamily RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Pfam PF03176 MMPL family 254 557 6.4E-24 T 18-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Pfam PF03176 MMPL family 727 948 2.5E-15 T 18-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 SUPERFAMILY SSF82866 724 940 1.57E-32 T 18-10-2018 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 SUPERFAMILY SSF55961 1 143 3.3E-24 T 18-10-2018 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 141 7.0E-14 T 18-10-2018 IPR019587 Polyketide cyclase/dehydrase RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Gene3D G3DSA:2.50.20.10 974 1216 6.8E-62 T 18-10-2018 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Pfam PF17131 Outer membrane lipoprotein-sorting protein 1028 1216 1.2E-45 T 18-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Gene3D G3DSA:1.20.1640.10 760 949 5.4E-19 T 18-10-2018 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 Gene3D G3DSA:1.20.1640.10 368 558 1.2E-8 T 18-10-2018 RU84_17730 ad15e9364a531fe527bf8c1d02aa1e86 1216 SUPERFAMILY SSF82866 327 547 4.19E-28 T 18-10-2018 RU84_07140 19ffdcaa55ead7252cdf04c970597b53 419 Gene3D G3DSA:3.40.710.30 14 407 9.0E-100 T 18-10-2018 RU84_07140 19ffdcaa55ead7252cdf04c970597b53 419 Pfam PF00144 Beta-lactamase 35 385 3.8E-54 T 18-10-2018 IPR001466 Beta-lactamase-related RU84_07140 19ffdcaa55ead7252cdf04c970597b53 419 SUPERFAMILY SSF56601 35 389 7.89E-69 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_05615 9d3abd33ef92440b8cf8a2c86187aa80 448 Gene3D G3DSA:1.20.1250.20 231 439 1.5E-31 T 18-10-2018 RU84_05615 9d3abd33ef92440b8cf8a2c86187aa80 448 Gene3D G3DSA:1.20.1250.20 16 211 6.2E-39 T 18-10-2018 RU84_05615 9d3abd33ef92440b8cf8a2c86187aa80 448 Pfam PF07690 Major Facilitator Superfamily 32 358 7.4E-25 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_05615 9d3abd33ef92440b8cf8a2c86187aa80 448 SUPERFAMILY SSF103473 15 433 7.32E-55 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 10 340 7.8E-118 T 18-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 Pfam PF00591 Glycosyl transferase family, a/b domain 77 332 1.5E-100 T 18-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 7 341 37.702 T 18-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 Gene3D G3DSA:3.40.1030.10 73 350 3.5E-102 T 18-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 Pfam PF02885 Glycosyl transferase family, helical bundle domain 9 68 8.3E-17 T 18-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 SUPERFAMILY SSF52418 77 344 6.15E-88 T 18-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 Gene3D G3DSA:1.20.970.10 1 72 2.9E-31 T 18-10-2018 RU84_05460 ac974ea6655dda4f9e843e24559a330f 351 SUPERFAMILY SSF47648 3 72 2.75E-19 T 18-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 RU84_03075 ba11d3497ac2cc0084d8d25aa92c7094 620 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 155 3.5E-22 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_03075 ba11d3497ac2cc0084d8d25aa92c7094 620 Gene3D G3DSA:2.170.130.10 36 160 3.1E-30 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_03075 ba11d3497ac2cc0084d8d25aa92c7094 620 SUPERFAMILY SSF56935 36 619 2.36E-103 T 18-10-2018 RU84_03075 ba11d3497ac2cc0084d8d25aa92c7094 620 Gene3D G3DSA:2.40.170.20 161 613 5.0E-73 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_03075 ba11d3497ac2cc0084d8d25aa92c7094 620 Pfam PF00593 TonB dependent receptor 210 618 5.5E-42 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_04355 66fa5eb707549976116042af3b77c897 308 Gene3D G3DSA:1.10.150.130 8 111 4.6E-22 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_04355 66fa5eb707549976116042af3b77c897 308 Pfam PF00589 Phage integrase family 131 290 3.5E-42 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_04355 66fa5eb707549976116042af3b77c897 308 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 21 91 6.4E-15 T 18-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 RU84_04355 66fa5eb707549976116042af3b77c897 308 Gene3D G3DSA:1.10.443.10 116 299 3.2E-57 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_04355 66fa5eb707549976116042af3b77c897 308 SUPERFAMILY SSF56349 11 299 2.03E-55 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_04355 66fa5eb707549976116042af3b77c897 308 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 305 51.82 T 18-10-2018 IPR023009 Tyrosine recombinase XerC/XerD RU84_02460 ff9523cc5d2edd3f71f55ef73ef69a4f 119 SUPERFAMILY SSF103196 7 116 2.41E-6 T 18-10-2018 RU84_02460 ff9523cc5d2edd3f71f55ef73ef69a4f 119 Gene3D G3DSA:3.30.450.30 3 117 3.1E-5 T 18-10-2018 RU84_00800 9636ac4a220af27a6aac079838e6d2ae 121 Pfam PF03692 Putative zinc- or iron-chelating domain 10 89 9.0E-8 T 18-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein RU84_02740 2cac850bbc1a3458e4169ae21686670e 143 Pfam PF10800 Protein of unknown function (DUF2528) 46 85 3.9E-6 T 18-10-2018 IPR024252 Protein of unknown function DUF2528 RU84_12410 5c487cd0cce55b077fc90755d7ed378b 367 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 154 267 1.7E-18 T 18-10-2018 IPR006528 Phage head morphogenesis domain RU84_12410 5c487cd0cce55b077fc90755d7ed378b 367 Pfam PF04233 Phage Mu protein F like protein 151 263 1.7E-13 T 18-10-2018 IPR006528 Phage head morphogenesis domain RU84_02860 f0628ae906c11caef080cda6ec6a3d87 149 Pfam PF05069 Phage virion morphogenesis family 3 146 3.8E-33 T 18-10-2018 IPR006522 Phage virion morphogensis protein RU84_02860 f0628ae906c11caef080cda6ec6a3d87 149 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 3 146 1.6E-34 T 18-10-2018 IPR006522 Phage virion morphogensis protein RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 SMART SM00487 104 358 3.0E-7 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 SMART SM00490 432 513 2.3E-12 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 SUPERFAMILY SSF52540 107 338 3.22E-15 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 SUPERFAMILY SSF52540 296 526 2.66E-28 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 Gene3D G3DSA:3.40.50.300 373 555 3.6E-32 T 18-10-2018 RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 Pfam PF04851 Type III restriction enzyme, res subunit 110 333 5.0E-11 T 18-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 RU84_18840 9cc172ee4015ac54cefe2123653bd8a5 569 Pfam PF00271 Helicase conserved C-terminal domain 406 512 9.2E-13 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_11005 b03f91d372070085cd0b38cc7c9a49f3 117 Gene3D G3DSA:1.20.58.340 30 105 1.1E-22 T 18-10-2018 RU84_11005 b03f91d372070085cd0b38cc7c9a49f3 117 Pfam PF01544 CorA-like Mg2+ transporter protein 14 100 3.7E-22 T 18-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 RU84_11005 b03f91d372070085cd0b38cc7c9a49f3 117 SUPERFAMILY SSF144083 40 102 4.05E-17 T 18-10-2018 RU84_16330 3a40b6b0e7b638a728fe66110b6eefc3 201 Pfam PF14497 Glutathione S-transferase, C-terminal domain 135 194 7.1E-5 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_16330 3a40b6b0e7b638a728fe66110b6eefc3 201 SUPERFAMILY SSF47616 80 194 3.76E-15 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_16330 3a40b6b0e7b638a728fe66110b6eefc3 201 Gene3D G3DSA:1.20.1050.10 82 189 5.1E-41 T 18-10-2018 RU84_16330 3a40b6b0e7b638a728fe66110b6eefc3 201 SUPERFAMILY SSF52833 2 83 2.99E-22 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_16330 3a40b6b0e7b638a728fe66110b6eefc3 201 Gene3D G3DSA:3.40.30.10 5 193 5.1E-41 T 18-10-2018 RU84_16330 3a40b6b0e7b638a728fe66110b6eefc3 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 73 1.9E-15 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_01250 b9f94d2780105d2b63db548f33072337 485 SMART SM00304 206 259 5.8E-5 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_01250 b9f94d2780105d2b63db548f33072337 485 Pfam PF00672 HAMP domain 206 251 1.3E-7 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_01250 b9f94d2780105d2b63db548f33072337 485 SMART SM00388 260 318 9.3E-10 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_01250 b9f94d2780105d2b63db548f33072337 485 Gene3D G3DSA:3.30.565.10 320 467 3.3E-33 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_01250 b9f94d2780105d2b63db548f33072337 485 Gene3D G3DSA:1.10.287.130 203 313 3.8E-20 T 18-10-2018 RU84_01250 b9f94d2780105d2b63db548f33072337 485 SMART SM00387 354 462 8.5E-29 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_01250 b9f94d2780105d2b63db548f33072337 485 Pfam PF00512 His Kinase A (phospho-acceptor) domain 261 310 2.0E-8 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_01250 b9f94d2780105d2b63db548f33072337 485 SUPERFAMILY SSF47384 244 316 6.67E-13 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_01250 b9f94d2780105d2b63db548f33072337 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 1.9E-12 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_01250 b9f94d2780105d2b63db548f33072337 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 459 1.9E-12 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_01250 b9f94d2780105d2b63db548f33072337 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 1.9E-12 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_01250 b9f94d2780105d2b63db548f33072337 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 1.9E-12 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_01250 b9f94d2780105d2b63db548f33072337 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 460 4.3E-21 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_01250 b9f94d2780105d2b63db548f33072337 485 SUPERFAMILY SSF55874 316 462 3.93E-34 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_02035 774a2883ca33b13d52ae7b828a079092 109 Gene3D G3DSA:3.90.470.10 1 109 3.9E-45 T 18-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02035 774a2883ca33b13d52ae7b828a079092 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.6E-46 T 18-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02035 774a2883ca33b13d52ae7b828a079092 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 25.555 T 18-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02035 774a2883ca33b13d52ae7b828a079092 109 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 18-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_02035 774a2883ca33b13d52ae7b828a079092 109 SUPERFAMILY SSF54843 1 107 9.29E-42 T 18-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02035 774a2883ca33b13d52ae7b828a079092 109 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 3.6E-36 T 18-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 358 2.2E-162 T 18-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 Gene3D G3DSA:1.20.58.410 2 101 3.0E-5 T 18-10-2018 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 18-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 Gene3D G3DSA:3.30.70.1660 112 342 2.9E-95 T 18-10-2018 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.361 T 18-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 Gene3D G3DSA:3.30.160.20 210 297 2.9E-95 T 18-10-2018 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 SMART SM00937 63 178 6.9E-66 T 18-10-2018 IPR005139 Peptide chain release factor GO:0006415 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 Pfam PF03462 PCRF domain 14 203 2.3E-73 T 18-10-2018 IPR005139 Peptide chain release factor GO:0006415 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 SUPERFAMILY SSF75620 12 353 6.41E-135 T 18-10-2018 RU84_06640 0e92f59a65caa0411e3fe094b92eeb4a 362 Pfam PF00472 RF-1 domain 213 321 2.6E-40 T 18-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RU84_17350 86fb791cfb4fb044a259ae4adee98896 439 SUPERFAMILY SSF103473 10 436 3.01E-91 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_17350 86fb791cfb4fb044a259ae4adee98896 439 Pfam PF00083 Sugar (and other) transporter 51 437 2.9E-47 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_17350 86fb791cfb4fb044a259ae4adee98896 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_17350 86fb791cfb4fb044a259ae4adee98896 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 115 140 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_17350 86fb791cfb4fb044a259ae4adee98896 439 Gene3D G3DSA:1.20.1250.20 12 438 4.4E-92 T 18-10-2018 RU84_17350 86fb791cfb4fb044a259ae4adee98896 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 305 320 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_19160 d04084bbe1825614812a6d1e55a89cec 415 Pfam PF01464 Transglycosylase SLT domain 30 132 2.9E-26 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_19160 d04084bbe1825614812a6d1e55a89cec 415 SUPERFAMILY SSF53955 21 150 3.44E-41 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_19160 d04084bbe1825614812a6d1e55a89cec 415 Gene3D G3DSA:1.10.530.10 21 154 1.0E-39 T 18-10-2018 RU84_19160 d04084bbe1825614812a6d1e55a89cec 415 Pfam PF07996 Type IV secretion system proteins 227 393 4.7E-6 T 18-10-2018 IPR014158 Type IV secretion system, VirB5 RU84_19160 d04084bbe1825614812a6d1e55a89cec 415 Gene3D G3DSA:1.20.58.430 224 405 2.8E-7 T 18-10-2018 IPR023220 Type IV secretion system, VirB5-domain RU84_19160 d04084bbe1825614812a6d1e55a89cec 415 SUPERFAMILY SSF101082 227 391 1.7E-9 T 18-10-2018 RU84_12110 51a288eab24701580e0d384c6a8890b1 414 Gene3D G3DSA:3.20.20.70 1 350 4.9E-119 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_12110 51a288eab24701580e0d384c6a8890b1 414 SUPERFAMILY SSF51395 1 348 1.59E-106 T 18-10-2018 RU84_12110 51a288eab24701580e0d384c6a8890b1 414 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 341 1.4E-60 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_02480 3579afc6a353333caf8033bee1297eeb 128 ProSitePatterns PS00360 Ribosomal protein S9 signature. 67 85 - T 18-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 RU84_02480 3579afc6a353333caf8033bee1297eeb 128 SUPERFAMILY SSF54211 4 128 1.18E-46 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_02480 3579afc6a353333caf8033bee1297eeb 128 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 128 31.08 T 18-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid RU84_02480 3579afc6a353333caf8033bee1297eeb 128 Gene3D G3DSA:3.30.230.10 2 128 3.4E-50 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_02480 3579afc6a353333caf8033bee1297eeb 128 Pfam PF00380 Ribosomal protein S9/S16 8 128 3.5E-44 T 18-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 SUPERFAMILY SSF50022 14 171 1.03E-44 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 203 391 2.0E-19 T 18-10-2018 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 109 129 1.4E-48 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 88 108 1.4E-48 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 196 218 1.4E-48 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 155 181 1.4E-48 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 37 62 1.4E-48 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 67 82 1.4E-48 T 18-10-2018 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0044237|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 Gene3D G3DSA:2.102.10.10 52 179 1.8E-112 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 Pfam PF00355 Rieske [2Fe-2S] domain 52 135 2.1E-22 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 SUPERFAMILY SSF55961 171 453 1.18E-69 T 18-10-2018 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 95 118 - T 18-10-2018 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0051537|GO:0055114 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 Gene3D G3DSA:3.90.380.10 30 443 1.8E-112 T 18-10-2018 RU84_11310 23fdd734bffe96d1b57dba86f3d32c81 460 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 15 447 3.1E-274 T 18-10-2018 IPR017639 Benzoate 1,2-dioxygenase, large subunit RU84_00310 e77a7b7482651ae09e26c59ea5cbad46 214 SUPERFAMILY SSF52499 6 213 1.44E-52 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_00310 e77a7b7482651ae09e26c59ea5cbad46 214 Pfam PF00857 Isochorismatase family 10 207 1.2E-33 T 18-10-2018 IPR000868 Isochorismatase-like GO:0003824 RU84_00310 e77a7b7482651ae09e26c59ea5cbad46 214 Gene3D G3DSA:3.40.50.850 5 214 2.5E-83 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 Gene3D G3DSA:3.40.605.10 21 474 1.2E-186 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 Pfam PF00171 Aldehyde dehydrogenase family 20 478 4.5E-175 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 Gene3D G3DSA:3.40.309.10 262 451 1.2E-186 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 31 477 1.7E-214 T 18-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 SUPERFAMILY SSF53720 6 482 4.45E-175 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 255 262 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_13935 0ccff8342b4b3e7381ba1b8b467b5e59 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 283 294 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 6.6E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 6.6E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 214 6.6E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 Gene3D G3DSA:3.40.50.720 1 290 3.6E-88 T 18-10-2018 RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 56 287 2.3E-62 T 18-10-2018 RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 134 7.5E-40 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 235 7.5E-40 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 185 7.5E-40 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 195 214 7.5E-40 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 48 65 7.5E-40 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 252 272 7.5E-40 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 182 210 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_10315 c7225a686bbd6c87cb7de9b9a0130127 292 SUPERFAMILY SSF51735 45 290 1.13E-80 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 Gene3D G3DSA:3.40.50.150 8 203 2.2E-68 T 18-10-2018 RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 267 1.7E-86 T 18-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 SUPERFAMILY SSF53335 10 268 2.61E-77 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 Gene3D G3DSA:1.10.8.100 207 270 5.0E-22 T 18-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 269 58.219 T 18-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 SMART SM00650 30 202 7.5E-83 T 18-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 14 266 1.1E-66 T 18-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm RU84_02495 59ebd8e07a8a915c84be8b468b2ee44e 270 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 46 73 - T 18-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 RU84_17935 768d596cdb76a8586275bf6cd729c537 383 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 74.465 T 18-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 RU84_17935 768d596cdb76a8586275bf6cd729c537 383 PIRSF PIRSF000138 2 380 1.6E-121 T 18-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RU84_17935 768d596cdb76a8586275bf6cd729c537 383 Pfam PF01070 FMN-dependent dehydrogenase 13 375 3.0E-125 T 18-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 RU84_17935 768d596cdb76a8586275bf6cd729c537 383 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 18-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 RU84_17935 768d596cdb76a8586275bf6cd729c537 383 Gene3D G3DSA:3.20.20.70 3 381 1.6E-125 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_17935 768d596cdb76a8586275bf6cd729c537 383 SUPERFAMILY SSF51395 5 376 2.2E-99 T 18-10-2018 RU84_15875 91edea8f67a6d573c7cadc79d82f07da 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 1.2E-31 T 18-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RU84_15875 91edea8f67a6d573c7cadc79d82f07da 66 Gene3D G3DSA:1.10.10.600 1 66 2.6E-28 T 18-10-2018 IPR036762 IscX-like superfamily RU84_15875 91edea8f67a6d573c7cadc79d82f07da 66 SUPERFAMILY SSF140319 3 64 1.1E-26 T 18-10-2018 IPR036762 IscX-like superfamily RU84_15875 91edea8f67a6d573c7cadc79d82f07da 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 65 9.5E-32 T 18-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RU84_15875 91edea8f67a6d573c7cadc79d82f07da 66 PIRSF PIRSF039003 3 66 2.7E-35 T 18-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 RU84_10150 6b6b98491b347b4731aa19cef072de35 197 SUPERFAMILY SSF55729 5 179 1.53E-37 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_10150 6b6b98491b347b4731aa19cef072de35 197 Gene3D G3DSA:3.40.630.30 1 194 1.2E-42 T 18-10-2018 RU84_10150 6b6b98491b347b4731aa19cef072de35 197 Pfam PF13302 Acetyltransferase (GNAT) domain 14 153 1.4E-12 T 18-10-2018 IPR000182 GNAT domain RU84_01425 c745fe20e0a22b91d98bb62bda53d938 268 SUPERFAMILY SSF53335 2 255 3.44E-41 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_01425 c745fe20e0a22b91d98bb62bda53d938 268 Gene3D G3DSA:3.40.50.150 1 264 3.4E-73 T 18-10-2018 RU84_01425 c745fe20e0a22b91d98bb62bda53d938 268 Pfam PF08241 Methyltransferase domain 84 168 1.9E-12 T 18-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 RU84_01425 c745fe20e0a22b91d98bb62bda53d938 268 PIRSF PIRSF018249 1 263 2.9E-88 T 18-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 RU84_01080 0ab8aad6c15e36e389f417a280301d00 300 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 279 5.3E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_01080 0ab8aad6c15e36e389f417a280301d00 300 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 295 5.3E-6 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_01080 0ab8aad6c15e36e389f417a280301d00 300 SMART SM00342 211 295 3.4E-15 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_01080 0ab8aad6c15e36e389f417a280301d00 300 Gene3D G3DSA:1.10.10.60 193 298 4.2E-21 T 18-10-2018 RU84_01080 0ab8aad6c15e36e389f417a280301d00 300 SUPERFAMILY SSF46689 251 297 1.12E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_01080 0ab8aad6c15e36e389f417a280301d00 300 Pfam PF12833 Helix-turn-helix domain 222 296 4.5E-16 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_15050 61a0efce80a55774cbb1572aaed3c491 263 Pfam PF04445 Putative SAM-dependent methyltransferase 67 262 6.3E-50 T 18-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 RU84_15050 61a0efce80a55774cbb1572aaed3c491 263 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 1 263 26.136 T 18-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 RU84_15050 61a0efce80a55774cbb1572aaed3c491 263 SUPERFAMILY SSF53335 33 262 1.52E-52 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_15050 61a0efce80a55774cbb1572aaed3c491 263 Gene3D G3DSA:3.40.50.150 67 263 7.7E-62 T 18-10-2018 RU84_01725 207876652f99c55ff3d8bf6fe724bfb6 477 Gene3D G3DSA:1.20.1740.10 20 476 1.3E-64 T 18-10-2018 RU84_01725 207876652f99c55ff3d8bf6fe724bfb6 477 ProSitePatterns PS00218 Amino acid permeases signature. 53 84 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_01725 207876652f99c55ff3d8bf6fe724bfb6 477 Pfam PF00324 Amino acid permease 28 472 2.3E-112 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_01725 207876652f99c55ff3d8bf6fe724bfb6 477 PIRSF PIRSF006060 2 477 4.0E-80 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_10225 06697c771f5603ae0dc3155d5fb94ccd 212 Pfam PF01810 LysE type translocator 19 208 1.4E-32 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_10225 06697c771f5603ae0dc3155d5fb94ccd 212 PIRSF PIRSF006324 5 210 5.4E-46 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_08730 69c0c3224ee4c3d22f02b973d12f48b9 75 Pfam PF01638 HxlR-like helix-turn-helix 1 54 2.5E-15 T 18-10-2018 IPR002577 Helix-turn-helix, HxlR type RU84_08730 69c0c3224ee4c3d22f02b973d12f48b9 75 SUPERFAMILY SSF46785 1 64 3.2E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08730 69c0c3224ee4c3d22f02b973d12f48b9 75 Gene3D G3DSA:1.10.10.10 1 67 1.7E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07675 8975242db5f055a05d3dd925d5e4f55b 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 10 105 4.7E-44 T 18-10-2018 IPR004480 Monothiol glutaredoxin-related RU84_07675 8975242db5f055a05d3dd925d5e4f55b 113 SUPERFAMILY SSF52833 7 108 2.5E-34 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_07675 8975242db5f055a05d3dd925d5e4f55b 113 Gene3D G3DSA:3.40.30.10 6 109 4.8E-31 T 18-10-2018 RU84_07675 8975242db5f055a05d3dd925d5e4f55b 113 Pfam PF00462 Glutaredoxin 21 85 4.5E-18 T 18-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 RU84_07675 8975242db5f055a05d3dd925d5e4f55b 113 PIRSF PIRSF005894 2 112 4.4E-47 T 18-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 Gene3D G3DSA:3.50.50.60 9 311 1.1E-122 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 300 9.7E-50 T 18-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 SUPERFAMILY SSF51905 2 312 4.65E-55 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 18-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.1E-38 T 18-10-2018 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 1.1E-38 T 18-10-2018 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.1E-38 T 18-10-2018 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 1.1E-38 T 18-10-2018 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 1.1E-38 T 18-10-2018 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 237 258 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 293 312 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 4.8E-79 T 18-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 312 2.5E-121 T 18-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 RU84_15500 9712a0a95f963bfb7e858d17cf636492 317 Gene3D G3DSA:3.50.50.60 117 243 1.1E-122 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13960 2d4265d439853d9102f9800b108088e3 326 Gene3D G3DSA:3.40.190.10 95 291 7.5E-54 T 18-10-2018 RU84_13960 2d4265d439853d9102f9800b108088e3 326 SUPERFAMILY SSF46785 6 87 3.1E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_13960 2d4265d439853d9102f9800b108088e3 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.3E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_13960 2d4265d439853d9102f9800b108088e3 326 Pfam PF03466 LysR substrate binding domain 93 294 7.0E-28 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_13960 2d4265d439853d9102f9800b108088e3 326 Gene3D G3DSA:1.10.10.10 6 90 2.0E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_13960 2d4265d439853d9102f9800b108088e3 326 Gene3D G3DSA:3.40.190.10 166 267 7.5E-54 T 18-10-2018 RU84_13960 2d4265d439853d9102f9800b108088e3 326 SUPERFAMILY SSF53850 93 295 6.15E-34 T 18-10-2018 RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 SUPERFAMILY SSF52402 3 145 3.68E-38 T 18-10-2018 RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 PRINTS PR01438 Universal stress protein signature 123 145 1.8E-21 T 18-10-2018 IPR006015 Universal stress protein A RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 PRINTS PR01438 Universal stress protein signature 3 21 1.8E-21 T 18-10-2018 IPR006015 Universal stress protein A RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 PRINTS PR01438 Universal stress protein signature 105 117 1.8E-21 T 18-10-2018 IPR006015 Universal stress protein A RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 PIRSF PIRSF006276 1 145 9.8E-21 T 18-10-2018 IPR006015 Universal stress protein A RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 Pfam PF00582 Universal stress protein family 3 145 6.3E-30 T 18-10-2018 IPR006016 UspA RU84_04010 ffd7f7491bed8250e7686c43d8dada4f 145 Gene3D G3DSA:3.40.50.620 1 145 4.5E-38 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_14290 0b7f35fa10268348fdc94f660149d901 310 Pfam PF13479 AAA domain 20 201 1.1E-30 T 18-10-2018 RU84_14290 0b7f35fa10268348fdc94f660149d901 310 SUPERFAMILY SSF52540 18 103 9.45E-6 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18005 6ac095356bea41a6ea681c29ac185446 345 SUPERFAMILY SSF51269 283 344 2.88E-18 T 18-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 13 339 1.2E-155 T 18-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 Pfam PF08666 SAF domain 288 342 5.7E-11 T 18-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 SUPERFAMILY SSF51569 1 299 3.17E-94 T 18-10-2018 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 Gene3D G3DSA:3.90.1210.10 288 345 3.6E-18 T 18-10-2018 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 Pfam PF03102 NeuB family 34 272 1.2E-92 T 18-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 SMART SM00858 287 345 6.3E-8 T 18-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 RU84_18005 6ac095356bea41a6ea681c29ac185446 345 Gene3D G3DSA:3.20.20.70 1 272 2.6E-96 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_15980 ecc312f4001d19c5232e9c137039d814 767 SUPERFAMILY SSF56935 25 767 4.09E-123 T 18-10-2018 RU84_15980 ecc312f4001d19c5232e9c137039d814 767 Gene3D G3DSA:2.170.130.10 44 172 4.5E-38 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_15980 ecc312f4001d19c5232e9c137039d814 767 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 160 5.8E-19 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_15980 ecc312f4001d19c5232e9c137039d814 767 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 766 4.5E-85 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_15980 ecc312f4001d19c5232e9c137039d814 767 Pfam PF00593 TonB dependent receptor 236 766 1.7E-52 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_15980 ecc312f4001d19c5232e9c137039d814 767 Gene3D G3DSA:2.40.170.20 176 767 1.8E-132 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_02820 39c96e92da7870ee6ed15941a863b835 172 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 170 3.6E-43 T 18-10-2018 IPR006498 Tail tube protein RU84_02820 39c96e92da7870ee6ed15941a863b835 172 Pfam PF04985 Phage tail tube protein FII 4 170 1.6E-55 T 18-10-2018 IPR006498 Tail tube protein RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 716 738 - T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 Gene3D G3DSA:3.20.70.20 219 882 8.1E-249 T 18-10-2018 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 Pfam PF03477 ATP cone domain 123 201 3.9E-5 T 18-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 Pfam PF03477 ATP cone domain 11 108 3.6E-18 T 18-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 278 869 9.6E-122 T 18-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 SUPERFAMILY SSF48168 128 336 1.02E-57 T 18-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 Pfam PF02867 Ribonucleotide reductase, barrel domain 338 872 3.3E-185 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 SUPERFAMILY SSF51998 337 874 3.66E-183 T 18-10-2018 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 261 332 1.6E-19 T 18-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 584 607 2.7E-47 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 622 644 2.7E-47 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 413 432 2.7E-47 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 547 558 2.7E-47 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 650 673 2.7E-47 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 PRINTS PR01183 Ribonucleotide reductase large chain signature 727 754 2.7E-47 T 18-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14815 ccf05522c6cabf13a97af26a62ed8a98 943 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 264 874 1.0E-213 T 18-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_02855 531a7ee4e3274a6587a2cbd956f227f8 208 Pfam PF04717 Type VI secretion system, phage-baseplate injector 3 117 2.1E-25 T 18-10-2018 IPR006531 Gp5 N-terminal RU84_02855 531a7ee4e3274a6587a2cbd956f227f8 208 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 6 206 3.3E-27 T 18-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 RU84_02855 531a7ee4e3274a6587a2cbd956f227f8 208 Gene3D G3DSA:2.40.50.230 2 87 2.4E-21 T 18-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily RU84_04460 8c4cff0532aebcb16fdf227117f6c576 319 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 13 277 3.5E-36 T 18-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RU84_04460 8c4cff0532aebcb16fdf227117f6c576 319 PIRSF PIRSF026649 1 285 5.6E-67 T 18-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RU84_11670 8f87a960be5c805251b1426f84674e07 410 Pfam PF07690 Major Facilitator Superfamily 19 321 1.4E-42 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_11670 8f87a960be5c805251b1426f84674e07 410 SUPERFAMILY SSF103473 9 399 1.7E-75 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_11670 8f87a960be5c805251b1426f84674e07 410 Gene3D G3DSA:1.20.1250.20 9 204 8.9E-40 T 18-10-2018 RU84_11670 8f87a960be5c805251b1426f84674e07 410 Gene3D G3DSA:1.20.1250.20 216 402 2.5E-23 T 18-10-2018 RU84_11670 8f87a960be5c805251b1426f84674e07 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 68 84 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 Gene3D G3DSA:3.30.930.10 3 216 5.0E-113 T 18-10-2018 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 Gene3D G3DSA:1.20.58.180 217 298 2.2E-35 T 18-10-2018 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 SUPERFAMILY SSF55681 10 292 5.74E-137 T 18-10-2018 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.334 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.3E-69 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.3E-69 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.3E-69 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.3E-69 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.3E-69 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.3E-69 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 2.2E-163 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01815 7c4219d5dc6f531c87b7e41a301cc226 325 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 1.2E-153 T 18-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 SMART SM00382 39 224 1.4E-10 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 SMART SM00382 366 545 3.2E-15 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 Pfam PF00005 ABC transporter 32 173 4.8E-30 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 Gene3D G3DSA:3.40.50.300 329 573 1.5E-63 T 18-10-2018 RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 Gene3D G3DSA:3.40.50.300 1 241 3.1E-62 T 18-10-2018 RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 SUPERFAMILY SSF52540 8 233 6.31E-55 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 Pfam PF00005 ABC transporter 358 499 2.5E-28 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_08940 f5aeb0ffb213e38b10bf29d0e0fbbb5a 587 SUPERFAMILY SSF52540 340 560 1.38E-58 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12900 b031f2b4aebc749e3467d96e14c1fa77 281 SUPERFAMILY SSF52518 9 275 7.54E-76 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_12900 b031f2b4aebc749e3467d96e14c1fa77 281 Gene3D G3DSA:3.40.50.970 4 279 2.6E-85 T 18-10-2018 RU84_12900 b031f2b4aebc749e3467d96e14c1fa77 281 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 19 267 4.2E-38 T 18-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 RU84_08630 8a713207c9156f825793eea3ea007c97 213 Pfam PF01144 Coenzyme A transferase 7 199 1.4E-44 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08630 8a713207c9156f825793eea3ea007c97 213 SUPERFAMILY SSF100950 3 209 3.18E-75 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_08630 8a713207c9156f825793eea3ea007c97 213 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 207 1.6E-99 T 18-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 RU84_08630 8a713207c9156f825793eea3ea007c97 213 SMART SM00882 6 202 1.3E-77 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08630 8a713207c9156f825793eea3ea007c97 213 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 18-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 RU84_08630 8a713207c9156f825793eea3ea007c97 213 Gene3D G3DSA:3.40.1080.10 2 210 2.0E-103 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 SMART SM00382 91 246 6.0E-8 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_04325 e05894b998015b6822938315e6bd4830 462 Hamap MF_01498 DNA repair protein RadA [radA]. 21 455 42.661 T 18-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RU84_04325 e05894b998015b6822938315e6bd4830 462 SUPERFAMILY SSF54211 256 454 8.72E-39 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_04325 e05894b998015b6822938315e6bd4830 462 Gene3D G3DSA:3.30.230.10 319 458 3.5E-17 T 18-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup RU84_04325 e05894b998015b6822938315e6bd4830 462 Pfam PF06745 KaiC 75 150 4.3E-11 T 18-10-2018 IPR014774 KaiC-like domain RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 125 142 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 249 275 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 214 242 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 322 345 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 10 34 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 175 199 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 PRINTS PR01874 DNA repair protein radA signature 83 111 5.2E-91 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 451 6.9E-191 T 18-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 RU84_04325 e05894b998015b6822938315e6bd4830 462 Pfam PF13541 Subunit ChlI of Mg-chelatase 347 430 7.8E-7 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 Gene3D G3DSA:3.40.50.300 60 275 2.1E-40 T 18-10-2018 RU84_04325 e05894b998015b6822938315e6bd4830 462 SUPERFAMILY SSF52540 70 288 3.73E-48 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01740 9c458ee40e171600f2c4cf913e107319 343 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 9.8E-149 T 18-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RU84_01740 9c458ee40e171600f2c4cf913e107319 343 SUPERFAMILY SSF55729 1 337 2.52E-129 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_01740 9c458ee40e171600f2c4cf913e107319 343 Gene3D G3DSA:2.40.40.20 273 338 1.0E-13 T 18-10-2018 RU84_01740 9c458ee40e171600f2c4cf913e107319 343 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 335 2.9E-139 T 18-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RU84_01740 9c458ee40e171600f2c4cf913e107319 343 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 337 4.2E-157 T 18-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RU84_01740 9c458ee40e171600f2c4cf913e107319 343 Gene3D G3DSA:3.40.630.30 1 272 7.1E-115 T 18-10-2018 RU84_06160 b918a30e8bd31fe0bf72e8a8efc86d81 214 Gene3D G3DSA:3.90.550.10 1 199 7.7E-28 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_06160 b918a30e8bd31fe0bf72e8a8efc86d81 214 SUPERFAMILY SSF53448 1 202 2.16E-30 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_06160 b918a30e8bd31fe0bf72e8a8efc86d81 214 Pfam PF00535 Glycosyl transferase family 2 5 106 3.3E-14 T 18-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 Gene3D G3DSA:3.40.50.300 275 529 8.2E-82 T 18-10-2018 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 Gene3D G3DSA:3.40.50.300 13 274 6.1E-75 T 18-10-2018 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 SMART SM00382 312 510 5.5E-15 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 SMART SM00382 40 237 6.0E-14 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 ProSitePatterns PS00211 ABC transporters family signature. 425 439 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 SUPERFAMILY SSF52540 277 524 1.65E-64 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 Pfam PF00005 ABC transporter 304 453 6.4E-33 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 Pfam PF00005 ABC transporter 31 187 8.7E-27 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_12115 658dd97b6c95e1fdd4ba38c6d531e24c 529 SUPERFAMILY SSF52540 16 259 9.8E-61 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07740 9af1a46becd2d29106bed47cca57faf3 528 PIRSF PIRSF006446 352 526 9.0E-31 T 18-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RU84_07740 9af1a46becd2d29106bed47cca57faf3 528 PIRSF PIRSF006446 2 329 1.8E-117 T 18-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RU84_07740 9af1a46becd2d29106bed47cca57faf3 528 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 2.5E-174 T 18-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 SUPERFAMILY SSF46946 128 220 1.44E-28 T 18-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 SUPERFAMILY SSF81624 2 136 1.44E-36 T 18-10-2018 IPR035937 MutM-like, N-terminal RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 111 3.0E-27 T 18-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 216 1.4E-26 T 18-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 267 39.487 T 18-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 SUPERFAMILY SSF57716 215 267 2.02E-15 T 18-10-2018 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 Gene3D G3DSA:3.20.190.10 2 125 4.3E-35 T 18-10-2018 IPR035937 MutM-like, N-terminal RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 SMART SM00898 2 113 8.5E-45 T 18-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 Pfam PF06827 Zinc finger found in FPG and IleRS 239 267 4.3E-8 T 18-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 SMART SM01232 127 219 4.7E-43 T 18-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 Gene3D G3DSA:1.10.8.50 129 267 2.4E-45 T 18-10-2018 RU84_03295 681e2699a8e48b63c09793dbdfbaa09d 274 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 266 1.1E-86 T 18-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 RU84_05055 8b7f9b085d3e92eef39af31ce5b7e55e 231 Pfam PF00440 Bacterial regulatory proteins, tetR family 42 85 1.7E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_05055 8b7f9b085d3e92eef39af31ce5b7e55e 231 Gene3D G3DSA:1.10.10.60 23 77 9.2E-17 T 18-10-2018 RU84_05055 8b7f9b085d3e92eef39af31ce5b7e55e 231 Gene3D G3DSA:1.10.357.10 78 230 6.8E-27 T 18-10-2018 RU84_05055 8b7f9b085d3e92eef39af31ce5b7e55e 231 SUPERFAMILY SSF46689 27 101 7.18E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_15705 971c03bbf6004434564fb39da9ff4365 313 Gene3D G3DSA:3.90.640.20 205 299 1.9E-27 T 18-10-2018 IPR037126 PdaC/RsiV-like superfamily RU84_15705 971c03bbf6004434564fb39da9ff4365 313 Gene3D G3DSA:3.30.565.40 42 203 2.8E-29 T 18-10-2018 RU84_15705 971c03bbf6004434564fb39da9ff4365 313 Pfam PF11738 Protein of unknown function (DUF3298) 207 285 2.7E-10 T 18-10-2018 IPR021729 Domain of unknown function DUF3298 RU84_09325 f941795c3f7c3839c7dbc8e13ae521f0 121 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 87 2.7E-16 T 18-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 RU84_13680 14489558ea32e18dc9d488488011dda4 337 SUPERFAMILY SSF51569 6 335 4.15E-134 T 18-10-2018 RU84_13680 14489558ea32e18dc9d488488011dda4 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 331 5.8E-132 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 253 265 - T 18-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 Gene3D G3DSA:3.20.20.70 2 337 2.0E-140 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PIRSF PIRSF001415 2 336 6.6E-140 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 1.7E-55 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.7E-55 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 1.7E-55 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 1.7E-55 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 1.7E-55 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 1.7E-55 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_13680 14489558ea32e18dc9d488488011dda4 337 SMART SM01004 10 333 4.6E-223 T 18-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 RU84_09495 a4ecb854796dc014a905537b81272d92 387 Pfam PF08007 Cupin superfamily protein 14 312 2.3E-86 T 18-10-2018 IPR003347 JmjC domain RU84_09495 a4ecb854796dc014a905537b81272d92 387 Gene3D G3DSA:2.60.120.650 1 213 1.1E-73 T 18-10-2018 RU84_09495 a4ecb854796dc014a905537b81272d92 387 Gene3D G3DSA:1.10.10.2510 216 386 4.4E-14 T 18-10-2018 RU84_09495 a4ecb854796dc014a905537b81272d92 387 SMART SM00558 81 228 8.7E-6 T 18-10-2018 IPR003347 JmjC domain RU84_09495 a4ecb854796dc014a905537b81272d92 387 SUPERFAMILY SSF51197 7 296 4.39E-63 T 18-10-2018 RU84_04320 b998944c3c7028047899d620a4aed562 326 Pfam PF04280 Tim44-like domain 210 325 5.4E-11 T 18-10-2018 IPR007379 Tim44-like domain RU84_04320 b998944c3c7028047899d620a4aed562 326 SUPERFAMILY SSF54427 211 325 1.58E-7 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_04320 b998944c3c7028047899d620a4aed562 326 SMART SM00978 195 325 7.5E-30 T 18-10-2018 IPR007379 Tim44-like domain RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 SUPERFAMILY SSF52540 5 334 4.2E-73 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 SMART SM00382 122 247 5.8E-4 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 Pfam PF00437 Type II/IV secretion system protein 12 269 6.0E-47 T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 Gene3D G3DSA:3.30.450.90 1 100 4.7E-37 T 18-10-2018 RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 Gene3D G3DSA:3.40.50.300 101 345 1.0E-106 T 18-10-2018 RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 9.7E-155 T 18-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 RU84_13725 0670b5c243926a10facbbe9db69abfdc 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 18-10-2018 IPR001482 Type II/IV secretion system protein RU84_12720 9f359f55b17b2b029154fe097fadd073 329 SUPERFAMILY SSF46785 2 83 4.69E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_12720 9f359f55b17b2b029154fe097fadd073 329 Pfam PF03466 LysR substrate binding domain 97 304 8.2E-17 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_12720 9f359f55b17b2b029154fe097fadd073 329 Gene3D G3DSA:3.40.190.10 170 279 4.9E-61 T 18-10-2018 RU84_12720 9f359f55b17b2b029154fe097fadd073 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.9E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12720 9f359f55b17b2b029154fe097fadd073 329 Gene3D G3DSA:1.10.10.10 1 86 3.8E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_12720 9f359f55b17b2b029154fe097fadd073 329 Gene3D G3DSA:3.40.190.10 92 303 4.9E-61 T 18-10-2018 RU84_12720 9f359f55b17b2b029154fe097fadd073 329 SUPERFAMILY SSF53850 90 305 9.96E-37 T 18-10-2018 RU84_12720 9f359f55b17b2b029154fe097fadd073 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12720 9f359f55b17b2b029154fe097fadd073 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12720 9f359f55b17b2b029154fe097fadd073 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-6 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04125 e105efebda25187670dc83e4bac28041 502 SUPERFAMILY SSF53067 257 500 4.14E-86 T 18-10-2018 RU84_04125 e105efebda25187670dc83e4bac28041 502 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 8 255 3.5E-89 T 18-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 RU84_04125 e105efebda25187670dc83e4bac28041 502 Hamap MF_00186 Glycerol kinase [glpK]. 6 500 59.362 T 18-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RU84_04125 e105efebda25187670dc83e4bac28041 502 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 365 385 - T 18-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RU84_04125 e105efebda25187670dc83e4bac28041 502 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 264 453 1.6E-64 T 18-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 RU84_04125 e105efebda25187670dc83e4bac28041 502 PIRSF PIRSF000538 6 502 9.1E-181 T 18-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RU84_04125 e105efebda25187670dc83e4bac28041 502 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 7 499 1.5E-228 T 18-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 RU84_04125 e105efebda25187670dc83e4bac28041 502 Gene3D G3DSA:3.30.420.40 5 256 1.0E-111 T 18-10-2018 RU84_04125 e105efebda25187670dc83e4bac28041 502 SUPERFAMILY SSF53067 7 258 1.55E-97 T 18-10-2018 RU84_04125 e105efebda25187670dc83e4bac28041 502 Gene3D G3DSA:3.30.420.40 257 502 1.3E-93 T 18-10-2018 RU84_04125 e105efebda25187670dc83e4bac28041 502 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 138 150 - T 18-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 RU84_12045 67cb9bffff3821594db31fb9a2f9b543 96 Pfam PF11112 Pyocin activator protein PrtN 7 78 8.8E-16 T 18-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 RU84_12045 67cb9bffff3821594db31fb9a2f9b543 96 ProDom PD069311 TRANSCRIPTIONAL ACTIVATOR PRTN TRANSCRIPTION PYOCIN BIOSYNTHESIS DNA-BINDING BACTERIOCIN REGULATOR REGULATOR 2 74 0.003 T 18-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 RU84_04655 ce3922907fa79d3f580de99360cd621a 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 18-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RU84_04655 ce3922907fa79d3f580de99360cd621a 273 SUPERFAMILY SSF51161 2 256 7.21E-73 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_04655 ce3922907fa79d3f580de99360cd621a 273 Gene3D G3DSA:1.10.166.10 1 70 1.4E-28 T 18-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 RU84_04655 ce3922907fa79d3f580de99360cd621a 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 8.0E-25 T 18-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 RU84_04655 ce3922907fa79d3f580de99360cd621a 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 3.5E-13 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_04655 ce3922907fa79d3f580de99360cd621a 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 272 3.0E-147 T 18-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 RU84_04655 ce3922907fa79d3f580de99360cd621a 273 Gene3D G3DSA:2.160.10.10 87 257 3.7E-55 T 18-10-2018 RU84_04655 ce3922907fa79d3f580de99360cd621a 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0014 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_04655 ce3922907fa79d3f580de99360cd621a 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 57.401 T 18-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 RU84_11275 f36482c06d45b31675ad29822b1d4eb0 332 Gene3D G3DSA:1.10.620.20 1 330 1.2E-110 T 18-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RU84_11275 f36482c06d45b31675ad29822b1d4eb0 332 PIRSF PIRSF000040 1 330 7.0E-100 T 18-10-2018 IPR012078 Methane/phenol monooxygenase, hydroxylase component GO:0016709|GO:0055114 RU84_11275 f36482c06d45b31675ad29822b1d4eb0 332 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 51 274 3.2E-60 T 18-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 RU84_11275 f36482c06d45b31675ad29822b1d4eb0 332 SUPERFAMILY SSF47240 1 326 3.11E-102 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_06335 80c990a196001ca4b62f0dad12220182 187 PIRSF PIRSF036893 4 187 3.7E-60 T 18-10-2018 IPR022271 Lipocalin, ApoD type RU84_06335 80c990a196001ca4b62f0dad12220182 187 SUPERFAMILY SSF50814 16 186 1.47E-44 T 18-10-2018 IPR012674 Calycin RU84_06335 80c990a196001ca4b62f0dad12220182 187 PRINTS PR01171 Bacterial lipocalin signature 174 184 2.3E-7 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_06335 80c990a196001ca4b62f0dad12220182 187 PRINTS PR01171 Bacterial lipocalin signature 147 158 2.3E-7 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_06335 80c990a196001ca4b62f0dad12220182 187 PRINTS PR01171 Bacterial lipocalin signature 39 53 2.3E-7 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_06335 80c990a196001ca4b62f0dad12220182 187 Gene3D G3DSA:2.40.128.20 16 186 4.6E-51 T 18-10-2018 IPR012674 Calycin RU84_06335 80c990a196001ca4b62f0dad12220182 187 Pfam PF08212 Lipocalin-like domain 39 185 4.0E-51 T 18-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RU84_06335 80c990a196001ca4b62f0dad12220182 187 ProSitePatterns PS00213 Lipocalin signature. 40 51 - T 18-10-2018 IPR022272 Lipocalin family conserved site RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 Pfam PF03466 LysR substrate binding domain 92 292 1.9E-52 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.6E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.6E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.6E-5 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 SUPERFAMILY SSF46785 1 111 1.58E-19 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 Gene3D G3DSA:3.40.190.290 92 294 9.5E-43 T 18-10-2018 RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 SUPERFAMILY SSF53850 93 292 1.3E-46 T 18-10-2018 RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 Gene3D G3DSA:1.10.10.10 1 86 5.8E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14710 336fd5b7ec4ef003f58f368f7f7bbbe1 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.4E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Gene3D G3DSA:3.90.600.10 329 428 7.5E-33 T 18-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 18-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 SMART SM01209 103 296 2.6E-140 T 18-10-2018 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 2.8E-85 T 18-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 8.7E-35 T 18-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 SUPERFAMILY SSF56059 104 321 3.89E-66 T 18-10-2018 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Gene3D G3DSA:3.30.1490.20 122 190 2.9E-28 T 18-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 SUPERFAMILY SSF51246 328 423 1.65E-29 T 18-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 420 5.8E-27 T 18-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 SMART SM01210 329 422 6.0E-47 T 18-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Gene3D G3DSA:3.30.470.20 191 328 9.1E-58 T 18-10-2018 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 1.1E-175 T 18-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Gene3D G3DSA:3.40.50.20 2 95 7.6E-36 T 18-10-2018 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 42.95 T 18-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 RU84_06465 ba551b6855455c06a4b4ca43d2f637e7 428 SUPERFAMILY SSF52440 1 103 4.75E-36 T 18-10-2018 IPR016185 Pre-ATP-grasp domain superfamily RU84_09490 07b2df9269ad3053bd62e30e488764aa 197 Pfam PF02545 Maf-like protein 5 191 9.2E-37 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_09490 07b2df9269ad3053bd62e30e488764aa 197 PIRSF PIRSF006305 1 196 9.5E-37 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_09490 07b2df9269ad3053bd62e30e488764aa 197 Gene3D G3DSA:3.90.950.10 4 196 2.7E-47 T 18-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RU84_09490 07b2df9269ad3053bd62e30e488764aa 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 190 9.7E-38 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_09490 07b2df9269ad3053bd62e30e488764aa 197 Hamap MF_00528 Septum formation protein Maf [maf]. 5 196 22.2 T 18-10-2018 IPR003697 Maf-like protein GO:0047429 RU84_09490 07b2df9269ad3053bd62e30e488764aa 197 SUPERFAMILY SSF52972 2 191 2.49E-49 T 18-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 PIRSF PIRSF005261 1 289 1.3E-63 T 18-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 Gene3D G3DSA:1.10.287.480 183 230 1.2E-17 T 18-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 Gene3D G3DSA:3.90.1280.10 231 288 2.1E-18 T 18-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 SUPERFAMILY SSF118352 231 287 2.09E-15 T 18-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 Gene3D G3DSA:3.55.30.10 1 175 2.4E-50 T 18-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 Pfam PF01430 Hsp33 protein 5 278 4.9E-73 T 18-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 RU84_16575 906ba7e30f469d9822698f09ee4ecb02 291 SUPERFAMILY SSF64397 2 239 2.22E-61 T 18-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 RU84_07335 81239c303693647a096312c1af71f681 307 Pfam PF01967 MoaC family 1 136 1.3E-41 T 18-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07335 81239c303693647a096312c1af71f681 307 SMART SM00852 151 293 8.8E-21 T 18-10-2018 IPR001453 MoaB/Mog domain RU84_07335 81239c303693647a096312c1af71f681 307 Pfam PF00994 Probable molybdopterin binding domain 151 291 1.1E-29 T 18-10-2018 IPR001453 MoaB/Mog domain RU84_07335 81239c303693647a096312c1af71f681 307 PIRSF PIRSF036594 1 304 1.6E-65 T 18-10-2018 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823 RU84_07335 81239c303693647a096312c1af71f681 307 Gene3D G3DSA:3.30.70.640 1 146 7.5E-48 T 18-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07335 81239c303693647a096312c1af71f681 307 SUPERFAMILY SSF55040 1 140 1.57E-44 T 18-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 RU84_07335 81239c303693647a096312c1af71f681 307 SUPERFAMILY SSF53218 147 298 1.11E-36 T 18-10-2018 IPR036425 MoaB/Mog-like domain superfamily RU84_07335 81239c303693647a096312c1af71f681 307 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 149 287 1.7E-27 T 18-10-2018 IPR001453 MoaB/Mog domain RU84_07335 81239c303693647a096312c1af71f681 307 Gene3D G3DSA:3.40.980.10 147 302 4.0E-45 T 18-10-2018 IPR036425 MoaB/Mog-like domain superfamily RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 6.3E-7 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 6.3E-7 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 6.3E-7 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 SMART SM01130 4 300 2.4E-43 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 Pfam PF00701 Dihydrodipicolinate synthetase family 5 244 5.8E-28 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 Gene3D G3DSA:3.20.20.70 1 311 3.1E-113 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 SUPERFAMILY SSF51569 2 273 2.72E-50 T 18-10-2018 RU84_10830 b95b709f4534ec92bda2ef783feaeb38 311 PIRSF PIRSF001365 1 311 2.2E-61 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_15900 6634c39f9874c833791a17e9c59c0797 280 Pfam PF04072 Leucine carboxyl methyltransferase 58 182 5.1E-10 T 18-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RU84_15900 6634c39f9874c833791a17e9c59c0797 280 SUPERFAMILY SSF53335 53 270 2.55E-30 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_15900 6634c39f9874c833791a17e9c59c0797 280 Gene3D G3DSA:3.40.50.150 30 268 2.3E-20 T 18-10-2018 RU84_05995 2d67444069be307cc043e15a9aa122e0 629 Gene3D G3DSA:3.30.2010.10 92 183 3.3E-14 T 18-10-2018 RU84_05995 2d67444069be307cc043e15a9aa122e0 629 Pfam PF01435 Peptidase family M48 108 318 2.0E-6 T 18-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RU84_11170 da282263dbc2457aff361126639a2cc9 271 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 260 20.422 T 18-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_11170 da282263dbc2457aff361126639a2cc9 271 Gene3D G3DSA:3.40.50.720 3 157 6.4E-25 T 18-10-2018 RU84_11170 da282263dbc2457aff361126639a2cc9 271 PIRSF PIRSF000193 6 263 3.1E-50 T 18-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_11170 da282263dbc2457aff361126639a2cc9 271 SUPERFAMILY SSF48179 155 261 1.12E-26 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_11170 da282263dbc2457aff361126639a2cc9 271 Gene3D G3DSA:1.10.3730.10 158 264 8.6E-31 T 18-10-2018 RU84_11170 da282263dbc2457aff361126639a2cc9 271 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 156 259 1.5E-26 T 18-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 RU84_11170 da282263dbc2457aff361126639a2cc9 271 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 93 9.1E-7 T 18-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RU84_11170 da282263dbc2457aff361126639a2cc9 271 SUPERFAMILY SSF51735 8 152 4.92E-13 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11700 abfd33454ae6dd64f74e8e3459a4e6df 178 Pfam PF11578 Protein of unknown function (DUF3237) 29 176 6.1E-44 T 18-10-2018 IPR020915 Uncharacterised protein family UPF0311 RU84_11700 abfd33454ae6dd64f74e8e3459a4e6df 178 Hamap MF_00775 UPF0311 protein . 28 178 26.666 T 18-10-2018 IPR020915 Uncharacterised protein family UPF0311 RU84_11700 abfd33454ae6dd64f74e8e3459a4e6df 178 Gene3D G3DSA:2.40.160.20 19 178 1.8E-69 T 18-10-2018 RU84_09530 1d46ec888fade139b2966d1cc59f6164 146 SUPERFAMILY SSF54637 2 144 6.26E-32 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_09530 1d46ec888fade139b2966d1cc59f6164 146 Gene3D G3DSA:3.10.129.10 1 145 1.9E-40 T 18-10-2018 RU84_09530 1d46ec888fade139b2966d1cc59f6164 146 Pfam PF01575 MaoC like domain 16 112 9.3E-14 T 18-10-2018 IPR002539 MaoC-like dehydratase domain RU84_13090 b08c483471bcd853a4ab7db30eb42558 204 Pfam PF01914 MarC family integral membrane protein 5 200 4.3E-17 T 18-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 RU84_10065 b546116f9496bb3f0a3cb62fd41529c3 481 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 10 439 3.0E-168 T 18-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RU84_10065 b546116f9496bb3f0a3cb62fd41529c3 481 PIRSF PIRSF006446 3 464 6.1E-212 T 18-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 SUPERFAMILY SSF51735 7 250 1.55E-55 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 249 3.4E-43 T 18-10-2018 RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 Gene3D G3DSA:3.40.50.720 1 251 1.3E-60 T 18-10-2018 RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.8E-17 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.8E-17 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.8E-17 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.8E-17 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_16375 99f2384f395b6456b0a07aa3f7080ab2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.8E-17 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04410 1cff2431b770046e9c4cd515d78cfb40 495 Pfam PF02321 Outer membrane efflux protein 310 474 7.4E-19 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_04410 1cff2431b770046e9c4cd515d78cfb40 495 Pfam PF02321 Outer membrane efflux protein 40 279 3.8E-16 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_04410 1cff2431b770046e9c4cd515d78cfb40 495 SUPERFAMILY SSF56954 14 478 3.4E-59 T 18-10-2018 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 169 470 9.4E-120 T 18-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 Gene3D G3DSA:3.40.630.10 166 479 2.8E-133 T 18-10-2018 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 SUPERFAMILY SSF53187 163 478 1.98E-121 T 18-10-2018 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 37 135 2.6E-9 T 18-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 479 34.965 T 18-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 Gene3D G3DSA:3.40.220.10 1 165 2.6E-13 T 18-10-2018 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 331 338 - T 18-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 SUPERFAMILY SSF52949 1 163 5.41E-12 T 18-10-2018 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 PRINTS PR00481 Cytosol aminopeptidase signature 327 347 2.3E-54 T 18-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 PRINTS PR00481 Cytosol aminopeptidase signature 355 370 2.3E-54 T 18-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 PRINTS PR00481 Cytosol aminopeptidase signature 268 289 2.3E-54 T 18-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 PRINTS PR00481 Cytosol aminopeptidase signature 305 326 2.3E-54 T 18-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RU84_17240 501a3a5490c55de053b4df0a6c2ea5db 482 PRINTS PR00481 Cytosol aminopeptidase signature 246 263 2.3E-54 T 18-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 RU84_04475 81ae4342426fb84bae160dfd535d101b 208 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 2 183 30.486 T 18-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RU84_04475 81ae4342426fb84bae160dfd535d101b 208 Pfam PF00551 Formyl transferase 1 176 6.8E-60 T 18-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_04475 81ae4342426fb84bae160dfd535d101b 208 SUPERFAMILY SSF53328 1 198 1.15E-63 T 18-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 RU84_04475 81ae4342426fb84bae160dfd535d101b 208 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 1 185 2.1E-70 T 18-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 RU84_04475 81ae4342426fb84bae160dfd535d101b 208 Gene3D G3DSA:3.40.50.170 1 204 2.9E-78 T 18-10-2018 RU84_14520 33dfa4835d16b27d0c3632c83a577ee9 476 Gene3D G3DSA:3.40.50.2000 21 450 2.2E-144 T 18-10-2018 RU84_14520 33dfa4835d16b27d0c3632c83a577ee9 476 SUPERFAMILY SSF53756 3 454 5.53E-122 T 18-10-2018 RU84_14520 33dfa4835d16b27d0c3632c83a577ee9 476 Pfam PF00982 Glycosyltransferase family 20 17 453 4.2E-117 T 18-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 RU84_14520 33dfa4835d16b27d0c3632c83a577ee9 476 Gene3D G3DSA:3.40.50.2000 231 438 2.2E-144 T 18-10-2018 RU84_16690 d743e61e95cdc57218fb8da39608624d 122 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 107 2.4E-25 T 18-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RU84_06955 920d6130e474ca9c98d68b78e83505f4 228 SUPERFAMILY SSF52833 3 104 2.24E-25 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_06955 920d6130e474ca9c98d68b78e83505f4 228 Gene3D G3DSA:1.20.1050.10 88 225 1.3E-12 T 18-10-2018 RU84_06955 920d6130e474ca9c98d68b78e83505f4 228 SUPERFAMILY SSF47616 78 225 2.14E-15 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_06955 920d6130e474ca9c98d68b78e83505f4 228 Pfam PF14497 Glutathione S-transferase, C-terminal domain 148 225 1.4E-6 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_06955 920d6130e474ca9c98d68b78e83505f4 228 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 79 1.9E-15 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_06955 920d6130e474ca9c98d68b78e83505f4 228 Gene3D G3DSA:3.40.30.10 1 87 1.5E-18 T 18-10-2018 RU84_10785 af8e45f1702870c53f94538df788f41a 526 SUPERFAMILY SSF53720 20 517 2.75E-95 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_10785 af8e45f1702870c53f94538df788f41a 526 Gene3D G3DSA:3.40.605.10 44 519 2.4E-198 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_10785 af8e45f1702870c53f94538df788f41a 526 Gene3D G3DSA:3.40.309.10 267 454 2.4E-198 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_10785 af8e45f1702870c53f94538df788f41a 526 Pfam PF00171 Aldehyde dehydrogenase family 26 457 1.4E-43 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_11790 401d7e7d5c9202d0151d1161cacd8170 364 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 2.3E-133 T 18-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RU84_11790 401d7e7d5c9202d0151d1161cacd8170 364 SUPERFAMILY SSF55729 1 338 7.79E-122 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_11790 401d7e7d5c9202d0151d1161cacd8170 364 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 337 2.6E-129 T 18-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RU84_11790 401d7e7d5c9202d0151d1161cacd8170 364 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 6.3E-145 T 18-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 RU84_11790 401d7e7d5c9202d0151d1161cacd8170 364 Gene3D G3DSA:3.40.630.30 1 272 1.5E-110 T 18-10-2018 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 Gene3D G3DSA:3.20.19.10 678 917 2.8E-110 T 18-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 ProSitePatterns PS00450 Aconitase family signature 1. 452 468 - T 18-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 Gene3D G3DSA:1.10.1440.20 616 675 8.4E-19 T 18-10-2018 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 SUPERFAMILY SSF53732 7 651 1.57E-225 T 18-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 Pfam PF00330 Aconitase family (aconitate hydratase) 76 587 4.7E-181 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 Gene3D G3DSA:3.30.499.20 8 375 1.2E-160 T 18-10-2018 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 149 162 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 173 181 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 518 531 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 456 467 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 296 309 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 206 219 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 220 235 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 282 295 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 PRINTS PR00415 Aconitase family signature 375 389 1.2E-40 T 18-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 Pfam PF00694 Aconitase C-terminal domain 716 842 1.4E-50 T 18-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 Gene3D G3DSA:3.30.499.10 376 615 3.9E-98 T 18-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 SUPERFAMILY SSF52016 655 915 1.35E-89 T 18-10-2018 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 23 916 0.0 T 18-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 RU84_15695 fba64ebf31a001176b04bbcb2bb175f9 918 ProSitePatterns PS01244 Aconitase family signature 2. 518 531 - T 18-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 SMART SM00937 30 140 1.6E-58 T 18-10-2018 IPR005139 Peptide chain release factor GO:0006415 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 308 6.7E-145 T 18-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 Gene3D G3DSA:3.30.160.20 171 266 3.5E-96 T 18-10-2018 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 190 206 - T 18-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 310 33.237 T 18-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 SUPERFAMILY SSF75620 2 307 1.7E-125 T 18-10-2018 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 Gene3D G3DSA:1.20.58.410 1 61 4.3E-10 T 18-10-2018 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 Gene3D G3DSA:3.30.70.1660 75 303 3.5E-96 T 18-10-2018 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 Pfam PF00472 RF-1 domain 173 282 1.1E-40 T 18-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 RU84_00830 2c2e598da9c911128cab4d2da073ab5d 310 Pfam PF03462 PCRF domain 2 165 5.0E-53 T 18-10-2018 IPR005139 Peptide chain release factor GO:0006415 RU84_10260 5c523ba09c524debe80cfbd5a67372a9 94 Gene3D G3DSA:3.40.630.30 2 94 2.2E-22 T 18-10-2018 RU84_10260 5c523ba09c524debe80cfbd5a67372a9 94 Pfam PF14542 GCN5-related N-acetyl-transferase 14 90 5.4E-20 T 18-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase RU84_10260 5c523ba09c524debe80cfbd5a67372a9 94 SUPERFAMILY SSF55729 3 92 7.77E-23 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_17055 4c4b6c797db79801fa8da57b0a033552 108 SMART SM00528 63 108 1.0E-15 T 18-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 RU84_17055 4c4b6c797db79801fa8da57b0a033552 108 SUPERFAMILY SSF81273 66 108 4.71E-12 T 18-10-2018 RU84_17055 4c4b6c797db79801fa8da57b0a033552 108 Gene3D G3DSA:4.10.430.10 58 108 9.2E-19 T 18-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 RU84_17055 4c4b6c797db79801fa8da57b0a033552 108 Pfam PF00816 H-NS histone family 12 101 4.0E-22 T 18-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 RU84_06885 b7c60ce121d00bc25a5fabb34f1e5517 503 Gene3D G3DSA:3.40.309.10 266 461 3.7E-159 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_06885 b7c60ce121d00bc25a5fabb34f1e5517 503 SUPERFAMILY SSF53720 14 495 4.45E-158 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_06885 b7c60ce121d00bc25a5fabb34f1e5517 503 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_06885 b7c60ce121d00bc25a5fabb34f1e5517 503 Gene3D G3DSA:3.40.605.10 23 489 3.7E-159 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_06885 b7c60ce121d00bc25a5fabb34f1e5517 503 Pfam PF00171 Aldehyde dehydrogenase family 27 490 1.4E-158 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_06885 b7c60ce121d00bc25a5fabb34f1e5517 503 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_08395 0ff1aef8509a19b9a16d3fdd307f7ff7 595 Gene3D G3DSA:3.50.30.80 383 547 1.9E-34 T 18-10-2018 RU84_08395 0ff1aef8509a19b9a16d3fdd307f7ff7 595 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 129 139 - T 18-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_08395 0ff1aef8509a19b9a16d3fdd307f7ff7 595 SUPERFAMILY SSF52016 383 579 2.98E-46 T 18-10-2018 RU84_08395 0ff1aef8509a19b9a16d3fdd307f7ff7 595 Pfam PF00920 Dehydratase family 46 572 4.8E-158 T 18-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_08395 0ff1aef8509a19b9a16d3fdd307f7ff7 595 SUPERFAMILY SSF143975 7 380 2.48E-116 T 18-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_16925 bd305b2d10c52c5a7f993a298528632c 193 Gene3D G3DSA:2.40.160.20 18 193 1.8E-36 T 18-10-2018 RU84_16925 bd305b2d10c52c5a7f993a298528632c 193 SUPERFAMILY SSF56925 19 193 8.63E-21 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_16925 bd305b2d10c52c5a7f993a298528632c 193 Pfam PF03922 OmpW family 19 193 8.8E-32 T 18-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 RU84_12670 18335abaad845fd8265e43ee7b5a5e35 204 Hamap MF_01389 Urease accessory protein UreG [ureG]. 5 203 47.593 T 18-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RU84_12670 18335abaad845fd8265e43ee7b5a5e35 204 Gene3D G3DSA:3.40.50.300 7 203 7.6E-50 T 18-10-2018 RU84_12670 18335abaad845fd8265e43ee7b5a5e35 204 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 7 203 4.2E-104 T 18-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 RU84_12670 18335abaad845fd8265e43ee7b5a5e35 204 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 9 179 1.0E-36 T 18-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RU84_12670 18335abaad845fd8265e43ee7b5a5e35 204 PIRSF PIRSF005624 1 203 1.9E-47 T 18-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 RU84_12670 18335abaad845fd8265e43ee7b5a5e35 204 SUPERFAMILY SSF52540 4 198 2.55E-35 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04530 e547d61eaabf8963db8e4a5c8688d753 258 Pfam PF00588 SpoU rRNA Methylase family 117 250 2.4E-29 T 18-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RU84_04530 e547d61eaabf8963db8e4a5c8688d753 258 SUPERFAMILY SSF75217 116 258 3.14E-35 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_04530 e547d61eaabf8963db8e4a5c8688d753 258 Gene3D G3DSA:3.40.1280.10 114 258 9.6E-44 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_04530 e547d61eaabf8963db8e4a5c8688d753 258 SUPERFAMILY SSF55315 5 105 3.06E-14 T 18-10-2018 IPR029064 50S ribosomal protein L30e-like RU84_04530 e547d61eaabf8963db8e4a5c8688d753 258 Gene3D G3DSA:3.30.1330.30 5 105 1.9E-8 T 18-10-2018 IPR029064 50S ribosomal protein L30e-like RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SUPERFAMILY SSF47336 969 1043 2.36E-18 T 18-10-2018 IPR036736 ACP-like superfamily RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SMART SM00824 Thioesterase 1076 1315 9.3E-4 T 18-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Gene3D G3DSA:3.30.300.30 867 967 3.2E-32 T 18-10-2018 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1001 1016 - T 18-10-2018 IPR006162 Phosphopantetheine attachment site RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SUPERFAMILY SSF56801 475 990 8.9E-138 T 18-10-2018 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Pfam PF00550 Phosphopantetheine attachment site 980 1040 6.1E-13 T 18-10-2018 IPR009081 Phosphopantetheine binding ACP domain RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Pfam PF13193 AMP-binding enzyme C-terminal domain 880 952 7.8E-8 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Pfam PF00975 Thioesterase domain 1064 1313 9.8E-31 T 18-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Gene3D G3DSA:1.10.1200.10 968 1047 1.7E-23 T 18-10-2018 IPR036736 ACP-like superfamily RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SUPERFAMILY SSF53474 1049 1313 5.04E-54 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Gene3D G3DSA:3.40.50.1820 1048 1314 1.4E-57 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 ProSitePatterns PS00455 Putative AMP-binding domain signature. 622 633 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Pfam PF00501 AMP-binding enzyme 488 872 7.2E-86 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Pfam PF00668 Condensation domain 17 460 3.3E-67 T 18-10-2018 IPR001242 Condensation domain RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 506 896 5.6E-118 T 18-10-2018 IPR010071 Amino acid adenylation domain RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SUPERFAMILY SSF52777 192 456 1.78E-46 T 18-10-2018 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SMART SM00823 Phosphopantetheine attachment site 977 1046 9.1E-4 T 18-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Gene3D G3DSA:3.30.559.30 191 451 1.2E-89 T 18-10-2018 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Gene3D G3DSA:3.30.559.10 17 394 1.2E-89 T 18-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 SUPERFAMILY SSF52777 18 187 1.11E-24 T 18-10-2018 RU84_17735 39d72dadb15ab8cf00c76c3a824ac911 1319 Gene3D G3DSA:3.40.50.12780 472 866 9.2E-112 T 18-10-2018 RU84_12435 d219d703ef1ff69e80bf1ed442b864c5 142 Gene3D G3DSA:3.40.960.10 29 135 3.6E-6 T 18-10-2018 RU84_03670 78ead1aecbebb9bafc0b594742e31b35 303 Gene3D G3DSA:1.10.600.10 6 300 1.7E-88 T 18-10-2018 IPR008949 Isoprenoid synthase domain superfamily RU84_03670 78ead1aecbebb9bafc0b594742e31b35 303 SUPERFAMILY SSF48576 11 289 1.54E-77 T 18-10-2018 IPR008949 Isoprenoid synthase domain superfamily RU84_03670 78ead1aecbebb9bafc0b594742e31b35 303 Pfam PF00348 Polyprenyl synthetase 36 274 4.8E-57 T 18-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RU84_03670 78ead1aecbebb9bafc0b594742e31b35 303 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 18-10-2018 IPR033749 Polyprenyl synthetase, conserved site RU84_10255 57870a52af723d23109d5f682de73c70 219 Gene3D G3DSA:1.10.3720.10 1 215 4.9E-54 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10255 57870a52af723d23109d5f682de73c70 219 SUPERFAMILY SSF161098 11 204 2.22E-43 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10255 57870a52af723d23109d5f682de73c70 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 107 4.7E-31 T 18-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RU84_10255 57870a52af723d23109d5f682de73c70 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 213 7.7E-20 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 4 175 1.7E-62 T 18-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 9.9E-16 T 18-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 9.9E-16 T 18-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 9.9E-16 T 18-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 Pfam PF02357 Transcription termination factor nusG 2 107 1.1E-27 T 18-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 SMART SM00738 1 110 1.7E-43 T 18-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 Gene3D G3DSA:2.30.30.30 118 175 1.2E-19 T 18-10-2018 IPR014722 Ribosomal protein L2, domain 2 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 SMART SM00739 122 149 0.0029 T 18-10-2018 IPR005824 KOW RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 Gene3D G3DSA:3.30.70.940 1 117 5.7E-46 T 18-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 SUPERFAMILY SSF50104 120 175 4.21E-15 T 18-10-2018 IPR008991 Translation protein SH3-like domain superfamily RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 176 22.877 T 18-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 RU84_16985 a787310025a76be0e52b2f12f99ad9be 177 SUPERFAMILY SSF82679 1 112 1.31E-37 T 18-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 RU84_15355 e964c640c375250cfdff7d5916807c7e 283 Pfam PF03668 P-loop ATPase protein family 4 280 4.2E-86 T 18-10-2018 IPR005337 RapZ-like family GO:0005524 RU84_15355 e964c640c375250cfdff7d5916807c7e 283 PIRSF PIRSF005052 2 283 6.7E-111 T 18-10-2018 IPR005337 RapZ-like family GO:0005524 RU84_15355 e964c640c375250cfdff7d5916807c7e 283 Gene3D G3DSA:3.40.50.300 1 159 2.6E-5 T 18-10-2018 RU84_15355 e964c640c375250cfdff7d5916807c7e 283 SUPERFAMILY SSF52540 3 157 6.82E-10 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15355 e964c640c375250cfdff7d5916807c7e 283 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 2 281 38.305 T 18-10-2018 IPR005337 RapZ-like family GO:0005524 RU84_07430 53201070dcffc61d2a8643badc25a54e 217 SUPERFAMILY SSF46689 15 91 4.1E-18 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_07430 53201070dcffc61d2a8643badc25a54e 217 Gene3D G3DSA:1.10.357.10 89 217 2.3E-15 T 18-10-2018 RU84_07430 53201070dcffc61d2a8643badc25a54e 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 29 74 2.0E-15 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07430 53201070dcffc61d2a8643badc25a54e 217 SUPERFAMILY SSF48498 96 214 2.67E-5 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_07430 53201070dcffc61d2a8643badc25a54e 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 2.2E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07430 53201070dcffc61d2a8643badc25a54e 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 2.2E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07430 53201070dcffc61d2a8643badc25a54e 217 Gene3D G3DSA:1.10.10.60 6 74 6.9E-28 T 18-10-2018 RU84_01830 80eb34ca6efe16f416613f41dc964af1 265 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 8 261 3.6E-78 T 18-10-2018 IPR023875 DNA metabolism protein, putative RU84_01830 80eb34ca6efe16f416613f41dc964af1 265 Pfam PF13566 Domain of unknown function (DUF4130 89 260 2.7E-48 T 18-10-2018 IPR025404 Domain of unknown function DUF4130 RU84_11985 4932daa357f632c8f37d912944156295 653 SUPERFAMILY SSF52540 133 224 2.82E-5 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11985 4932daa357f632c8f37d912944156295 653 SUPERFAMILY SSF52540 199 491 1.09E-8 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11985 4932daa357f632c8f37d912944156295 653 Gene3D G3DSA:3.40.50.300 347 505 6.8E-10 T 18-10-2018 RU84_11985 4932daa357f632c8f37d912944156295 653 Pfam PF07728 AAA domain (dynein-related subfamily) 400 490 7.6E-9 T 18-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RU84_18560 49f605a6745db4b0569b2302bf36d9b5 371 SUPERFAMILY SSF56300 8 249 1.65E-16 T 18-10-2018 RU84_18560 49f605a6745db4b0569b2302bf36d9b5 371 Pfam PF00149 Calcineurin-like phosphoesterase 5 107 1.0E-4 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_18560 49f605a6745db4b0569b2302bf36d9b5 371 Gene3D G3DSA:3.60.21.10 7 253 2.9E-14 T 18-10-2018 IPR029052 Metallo-dependent phosphatase-like RU84_12220 6bb7ba8e163eae9f9fdfc64a7c964503 210 Gene3D G3DSA:1.20.120.740 2 175 1.0E-39 T 18-10-2018 RU84_12220 6bb7ba8e163eae9f9fdfc64a7c964503 210 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 10 166 2.2E-10 T 18-10-2018 IPR011978 Uncharacterised protein family UPF0149 RU84_12220 6bb7ba8e163eae9f9fdfc64a7c964503 210 SUPERFAMILY SSF101327 7 167 1.15E-35 T 18-10-2018 IPR036255 YgfB-like superfamily RU84_12220 6bb7ba8e163eae9f9fdfc64a7c964503 210 Pfam PF03695 Uncharacterised protein family (UPF0149) 21 164 4.0E-23 T 18-10-2018 IPR011978 Uncharacterised protein family UPF0149 RU84_05515 184aad7b79a174833ea03ee027b8c5a1 147 Pfam PF10881 Protein of unknown function (DUF2726) 38 146 7.2E-17 T 18-10-2018 IPR024402 Domain of unknown function DUF2726 RU84_05515 184aad7b79a174833ea03ee027b8c5a1 147 Gene3D G3DSA:3.40.960.10 41 146 9.3E-9 T 18-10-2018 RU84_18490 cb1cacf1cfe56065120f5e9551063988 640 PIRSF PIRSF031715 2 640 1.9E-78 T 18-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 RU84_18490 cb1cacf1cfe56065120f5e9551063988 640 Pfam PF11775 Cobalamin biosynthesis protein CobT VWA domain 423 638 5.4E-42 T 18-10-2018 IPR025861 Cobalamin biosynthesis protein CobT VWA domain KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 RU84_18490 cb1cacf1cfe56065120f5e9551063988 640 SUPERFAMILY SSF53300 434 632 3.9E-12 T 18-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RU84_18490 cb1cacf1cfe56065120f5e9551063988 640 Gene3D G3DSA:3.40.50.410 427 632 2.8E-8 T 18-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RU84_18490 cb1cacf1cfe56065120f5e9551063988 640 Pfam PF06213 Cobalamin biosynthesis protein CobT 7 275 1.8E-15 T 18-10-2018 IPR006538 Cobalt chelatase, CobT subunit GO:0009236 KEGG: 00860+6.6.1.2|MetaCyc: PWY-7376 RU84_16275 d00186bc9a5da0e0669047b087860862 215 Gene3D G3DSA:3.20.19.10 1 184 1.2E-77 T 18-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 RU84_16275 d00186bc9a5da0e0669047b087860862 215 SUPERFAMILY SSF52016 2 204 4.71E-62 T 18-10-2018 RU84_16275 d00186bc9a5da0e0669047b087860862 215 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 8.9E-84 T 18-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RU84_16275 d00186bc9a5da0e0669047b087860862 215 Pfam PF00694 Aconitase C-terminal domain 1 132 3.2E-37 T 18-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 RU84_16275 d00186bc9a5da0e0669047b087860862 215 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 43.682 T 18-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 RU84_07955 67bf17855749ceb8a8b0021467f85594 277 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 40 272 37.823 T 18-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07955 67bf17855749ceb8a8b0021467f85594 277 ProSitePatterns PS01028 Dehydroquinase class I active site. 138 168 - T 18-10-2018 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07955 67bf17855749ceb8a8b0021467f85594 277 SUPERFAMILY SSF51569 37 272 2.01E-68 T 18-10-2018 RU84_07955 67bf17855749ceb8a8b0021467f85594 277 Gene3D G3DSA:3.20.20.70 29 274 1.4E-80 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_07955 67bf17855749ceb8a8b0021467f85594 277 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 40 269 2.8E-80 T 18-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07955 67bf17855749ceb8a8b0021467f85594 277 Pfam PF01487 Type I 3-dehydroquinase 43 269 1.5E-62 T 18-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_17790 19f1796d44f75abca713497018c600dd 549 Gene3D G3DSA:3.30.300.30 440 548 3.0E-29 T 18-10-2018 RU84_17790 19f1796d44f75abca713497018c600dd 549 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 530 1.9E-23 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_17790 19f1796d44f75abca713497018c600dd 549 Gene3D G3DSA:3.40.50.12780 19 439 6.5E-97 T 18-10-2018 RU84_17790 19f1796d44f75abca713497018c600dd 549 SUPERFAMILY SSF56801 27 542 1.96E-138 T 18-10-2018 RU84_17790 19f1796d44f75abca713497018c600dd 549 ProSitePatterns PS00455 Putative AMP-binding domain signature. 194 205 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_17790 19f1796d44f75abca713497018c600dd 549 Pfam PF00501 AMP-binding enzyme 40 443 2.0E-77 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_07525 3f51933ff2092013517ed5986e437c72 146 Gene3D G3DSA:3.10.290.10 5 112 2.5E-35 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_07525 3f51933ff2092013517ed5986e437c72 146 SUPERFAMILY SSF55174 12 108 9.42E-26 T 18-10-2018 RU84_07525 3f51933ff2092013517ed5986e437c72 146 SMART SM00363 13 77 1.7E-8 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_07525 3f51933ff2092013517ed5986e437c72 146 PIRSF PIRSF016821 10 135 2.4E-39 T 18-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 RU84_07525 3f51933ff2092013517ed5986e437c72 146 Pfam PF01479 S4 domain 13 58 5.1E-11 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_04490 63ceb2c1edea25ea575a429fb92bdb32 232 Gene3D G3DSA:3.40.50.300 29 155 2.1E-22 T 18-10-2018 RU84_04490 63ceb2c1edea25ea575a429fb92bdb32 232 Pfam PF00308 Bacterial dnaA protein 31 185 1.5E-9 T 18-10-2018 IPR013317 Chromosomal replication initiator protein DnaA RU84_04490 63ceb2c1edea25ea575a429fb92bdb32 232 SUPERFAMILY SSF52540 34 190 2.38E-16 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04490 63ceb2c1edea25ea575a429fb92bdb32 232 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 3 224 5.9E-59 T 18-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 SUPERFAMILY SSF51905 1 360 3.97E-58 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 1.5E-20 T 18-10-2018 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 326 342 1.5E-20 T 18-10-2018 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.5E-20 T 18-10-2018 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 146 161 1.5E-20 T 18-10-2018 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 1.5E-20 T 18-10-2018 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 Pfam PF01494 FAD binding domain 2 339 3.0E-29 T 18-10-2018 IPR002938 FAD-binding domain GO:0071949 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 Gene3D G3DSA:3.30.9.30 35 269 4.5E-114 T 18-10-2018 RU84_00630 2220b9b0d716021c911e3457a2fa7301 385 Gene3D G3DSA:3.50.50.60 4 342 4.5E-114 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_05415 4c453e6c1118dae6a6edc22f6a375938 156 Pfam PF11220 Protein of unknown function (DUF3015) 19 155 2.2E-40 T 18-10-2018 IPR021383 Protein of unknown function DUF3015 RU84_18625 be194ec3095c018df58a134519894f3e 51 Gene3D G3DSA:3.40.50.2300 1 49 1.7E-7 T 18-10-2018 RU84_18625 be194ec3095c018df58a134519894f3e 51 Pfam PF00072 Response regulator receiver domain 4 47 9.5E-5 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_18625 be194ec3095c018df58a134519894f3e 51 SUPERFAMILY SSF52172 1 46 2.13E-9 T 18-10-2018 IPR011006 CheY-like superfamily RU84_07450 101864605a7c7521f644e6cefa2e2046 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 241 41.399 T 18-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RU84_07450 101864605a7c7521f644e6cefa2e2046 242 Gene3D G3DSA:3.40.1160.10 3 242 2.2E-66 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_07450 101864605a7c7521f644e6cefa2e2046 242 Pfam PF00696 Amino acid kinase family 11 220 9.7E-24 T 18-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 RU84_07450 101864605a7c7521f644e6cefa2e2046 242 SUPERFAMILY SSF53633 7 240 3.67E-63 T 18-10-2018 IPR036393 Acetylglutamate kinase-like superfamily RU84_07450 101864605a7c7521f644e6cefa2e2046 242 PIRSF PIRSF005650 4 242 5.6E-84 T 18-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 RU84_07450 101864605a7c7521f644e6cefa2e2046 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.6E-93 T 18-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 RU84_01160 f672a07a06ab0b5949ac0e09a7f680af 334 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 51 199 7.6E-25 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_01160 f672a07a06ab0b5949ac0e09a7f680af 334 SUPERFAMILY SSF46689 280 331 1.97E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_01160 f672a07a06ab0b5949ac0e09a7f680af 334 Gene3D G3DSA:1.10.10.60 224 333 7.2E-23 T 18-10-2018 RU84_01160 f672a07a06ab0b5949ac0e09a7f680af 334 Pfam PF12833 Helix-turn-helix domain 251 328 2.1E-18 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_01160 f672a07a06ab0b5949ac0e09a7f680af 334 SMART SM00342 245 327 3.7E-17 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_02765 87180ce6f4e33db1e8d84e79b0725d9f 113 SUPERFAMILY SSF47413 8 67 8.04E-7 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_02765 87180ce6f4e33db1e8d84e79b0725d9f 113 SMART SM00530 12 69 8.0E-4 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_02765 87180ce6f4e33db1e8d84e79b0725d9f 113 Gene3D G3DSA:1.10.260.40 6 70 9.2E-8 T 18-10-2018 RU84_12130 ccef8b0794a53ca839bcfe327053a57c 610 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 100 512 2.0E-70 T 18-10-2018 IPR000914 Solute-binding protein family 5 domain RU84_12130 ccef8b0794a53ca839bcfe327053a57c 610 PIRSF PIRSF002741 3 600 4.1E-92 T 18-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 RU84_12130 ccef8b0794a53ca839bcfe327053a57c 610 SUPERFAMILY SSF53850 51 596 3.62E-108 T 18-10-2018 RU84_12130 ccef8b0794a53ca839bcfe327053a57c 610 Gene3D G3DSA:3.40.190.10 31 595 2.0E-215 T 18-10-2018 RU84_12130 ccef8b0794a53ca839bcfe327053a57c 610 Gene3D G3DSA:3.10.105.10 314 575 2.0E-215 T 18-10-2018 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Gene3D G3DSA:1.10.486.10 384 553 4.9E-120 T 18-10-2018 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Gene3D G3DSA:1.10.10.160 112 188 4.1E-92 T 18-10-2018 IPR013986 DExx box DNA helicase domain superfamily RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 6 678 3.7E-288 T 18-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 SUPERFAMILY SSF52540 5 647 3.58E-156 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Gene3D G3DSA:3.40.50.300 8 273 4.1E-92 T 18-10-2018 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Pfam PF13361 UvrD-like helicase C-terminal domain 278 622 6.5E-71 T 18-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 272 2.8E-71 T 18-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Gene3D G3DSA:3.40.50.300 281 641 4.9E-120 T 18-10-2018 RU84_13785 fc7fab4d6fb1f943d23174bd64939aab 679 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 5 678 39.54 T 18-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 RU84_11570 a8ad71783d031f3513476f704626e715 240 SUPERFAMILY SSF51182 1 233 7.64E-76 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_11570 a8ad71783d031f3513476f704626e715 240 Pfam PF02678 Pirin 8 119 2.8E-35 T 18-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RU84_11570 a8ad71783d031f3513476f704626e715 240 PIRSF PIRSF006232 1 238 1.8E-52 T 18-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RU84_11570 a8ad71783d031f3513476f704626e715 240 Gene3D G3DSA:2.60.120.10 12 132 1.6E-56 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_11570 a8ad71783d031f3513476f704626e715 240 Gene3D G3DSA:2.60.120.10 133 237 5.6E-29 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_06565 26078a85733bafa2932225147c1739db 663 SUPERFAMILY SSF81442 45 559 3.92E-176 T 18-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 413 432 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 126 150 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 49 74 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 280 301 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 168 180 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 200 218 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 350 371 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 99 122 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 403 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 463 484 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 229 248 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 326 341 1.3E-94 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 58 506 3.1E-137 T 18-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 5 649 0.0 T 18-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 RU84_06565 26078a85733bafa2932225147c1739db 663 Gene3D G3DSA:1.20.210.10 31 561 5.4E-187 T 18-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06565 26078a85733bafa2932225147c1739db 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 282 336 - T 18-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_18320 03b40da69e72ae5e2c739e2fafe162dc 121 Pfam PF04342 Putative member of DMT superfamily (DUF486) 14 118 8.5E-39 T 18-10-2018 IPR007437 Protein of unknown function DUF486 RU84_18320 03b40da69e72ae5e2c739e2fafe162dc 121 PIRSF PIRSF021239 7 121 5.7E-47 T 18-10-2018 IPR007437 Protein of unknown function DUF486 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 18-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.2E-7 T 18-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.2E-7 T 18-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.2E-7 T 18-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 Pfam PF00137 ATP synthase subunit C 10 72 8.8E-9 T 18-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 Gene3D G3DSA:1.20.20.10 1 77 3.0E-27 T 18-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 1.2E-28 T 18-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 SUPERFAMILY SSF81333 2 78 4.05E-18 T 18-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily RU84_17570 94b12579d392b38dd17e2e4359e55ecc 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.695 T 18-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 5.0E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 5.0E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 5.0E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 182 8.7E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 8.7E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 184 201 8.7E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 8.7E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 8.7E-22 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 Pfam PF00106 short chain dehydrogenase 16 202 2.0E-50 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 Gene3D G3DSA:3.40.50.720 9 262 1.9E-65 T 18-10-2018 RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 SUPERFAMILY SSF51735 13 268 2.39E-65 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11560 65cbef9a057842fff8aac7c0f04e2074 276 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 150 178 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_17800 e4c8d2ea9a5aa38c31a8cc54d1950f26 505 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 13 488 5.2E-229 T 18-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 RU84_17800 e4c8d2ea9a5aa38c31a8cc54d1950f26 505 Pfam PF00171 Aldehyde dehydrogenase family 21 484 3.0E-145 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_17800 e4c8d2ea9a5aa38c31a8cc54d1950f26 505 Gene3D G3DSA:3.40.309.10 257 457 4.2E-151 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_17800 e4c8d2ea9a5aa38c31a8cc54d1950f26 505 Gene3D G3DSA:3.40.605.10 32 465 4.2E-151 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_17800 e4c8d2ea9a5aa38c31a8cc54d1950f26 505 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_17800 e4c8d2ea9a5aa38c31a8cc54d1950f26 505 SUPERFAMILY SSF53720 9 490 2.49E-152 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_11710 a3fe2cf2c4c5bf1e38d7eba7736cee5f 583 SUPERFAMILY SSF53474 142 513 4.77E-14 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_11710 a3fe2cf2c4c5bf1e38d7eba7736cee5f 583 Pfam PF07519 Tannase and feruloyl esterase 91 583 3.0E-156 T 18-10-2018 IPR011118 Tannase/feruloyl esterase MetaCyc: PWY-6784 RU84_10425 276dc92391a9853344280c32c8240350 1160 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 747 932 4.4E-27 T 18-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 RU84_10425 276dc92391a9853344280c32c8240350 1160 SUPERFAMILY SSF52518 455 633 4.3E-12 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_10425 276dc92391a9853344280c32c8240350 1160 SUPERFAMILY SSF52518 29 206 1.24E-15 T 18-10-2018 IPR029061 Thiamin diphosphate-binding fold RU84_10425 276dc92391a9853344280c32c8240350 1160 Gene3D G3DSA:3.40.50.970 16 231 2.3E-24 T 18-10-2018 RU84_10425 276dc92391a9853344280c32c8240350 1160 SUPERFAMILY SSF52922 277 355 3.66E-6 T 18-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 RU84_10425 276dc92391a9853344280c32c8240350 1160 Gene3D G3DSA:3.40.920.10 738 942 2.5E-23 T 18-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RU84_10425 276dc92391a9853344280c32c8240350 1160 SUPERFAMILY SSF53323 740 980 1.18E-27 T 18-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 RU84_05385 2ca43a84ed44f9f794e723ca7cca3a21 244 Pfam PF00975 Thioesterase domain 8 234 8.0E-30 T 18-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 RU84_05385 2ca43a84ed44f9f794e723ca7cca3a21 244 Gene3D G3DSA:3.40.50.1820 5 243 7.3E-43 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05385 2ca43a84ed44f9f794e723ca7cca3a21 244 SUPERFAMILY SSF53474 5 230 3.67E-33 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05285 4486ebb3ae33ce9f06bfa4858ea89970 187 SUPERFAMILY SSF46689 13 69 3.64E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_05285 4486ebb3ae33ce9f06bfa4858ea89970 187 Gene3D G3DSA:1.10.357.10 7 180 2.8E-19 T 18-10-2018 RU84_05285 4486ebb3ae33ce9f06bfa4858ea89970 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 5.6E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_05285 4486ebb3ae33ce9f06bfa4858ea89970 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 4.2E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_05285 4486ebb3ae33ce9f06bfa4858ea89970 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 4.2E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07625 7ec21c432014f785faaf20801f5f094e 315 Gene3D G3DSA:3.40.1190.20 1 307 1.1E-89 T 18-10-2018 IPR029056 Ribokinase-like RU84_07625 7ec21c432014f785faaf20801f5f094e 315 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 18-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RU84_07625 7ec21c432014f785faaf20801f5f094e 315 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 18-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 RU84_07625 7ec21c432014f785faaf20801f5f094e 315 Pfam PF00294 pfkB family carbohydrate kinase 14 291 3.7E-45 T 18-10-2018 IPR011611 Carbohydrate kinase PfkB RU84_07625 7ec21c432014f785faaf20801f5f094e 315 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 4 305 7.6E-102 T 18-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 RU84_07625 7ec21c432014f785faaf20801f5f094e 315 SUPERFAMILY SSF53613 4 291 1.09E-62 T 18-10-2018 IPR029056 Ribokinase-like RU84_07625 7ec21c432014f785faaf20801f5f094e 315 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 305 3.9E-100 T 18-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RU84_07625 7ec21c432014f785faaf20801f5f094e 315 PIRSF PIRSF000535 1 308 6.4E-87 T 18-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 SMART SM00382 99 252 1.5E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 1.7E-72 T 18-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 SUPERFAMILY SSF52540 42 351 5.31E-56 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 SMART SM00963 1 86 1.3E-36 T 18-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 SMART SM00962 100 296 4.1E-112 T 18-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 18-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 SUPERFAMILY SSF47446 298 432 1.44E-43 T 18-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Gene3D G3DSA:1.10.260.30 310 447 3.8E-37 T 18-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 442 33.781 T 18-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Gene3D G3DSA:1.20.120.140 5 305 6.5E-122 T 18-10-2018 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 4.5E-22 T 18-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 431 1.0E-174 T 18-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Gene3D G3DSA:3.40.50.300 90 285 6.5E-122 T 18-10-2018 RU84_14570 eeb4f8efa9af814e2abd5f2a9d5d673c 469 Pfam PF02978 Signal peptide binding domain 329 429 1.1E-29 T 18-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 RU84_00260 b26f9c4e4eadea4d511faa63b026e133 245 Pfam PF01738 Dienelactone hydrolase family 22 242 4.6E-45 T 18-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 RU84_00260 b26f9c4e4eadea4d511faa63b026e133 245 Gene3D G3DSA:3.40.50.1820 1 244 3.3E-60 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00260 b26f9c4e4eadea4d511faa63b026e133 245 SUPERFAMILY SSF53474 6 244 3.0E-40 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17205 4711fff218b23268ad75321c6673ea01 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17205 4711fff218b23268ad75321c6673ea01 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.9E-7 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17205 4711fff218b23268ad75321c6673ea01 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.9E-7 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17205 4711fff218b23268ad75321c6673ea01 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.9E-7 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17205 4711fff218b23268ad75321c6673ea01 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 203 6.6E-16 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17205 4711fff218b23268ad75321c6673ea01 211 Pfam PF00072 Response regulator receiver domain 4 116 4.2E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17205 4711fff218b23268ad75321c6673ea01 211 Gene3D G3DSA:3.40.50.12740 2 209 4.5E-62 T 18-10-2018 RU84_17205 4711fff218b23268ad75321c6673ea01 211 SMART SM00448 2 115 7.6E-31 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_17205 4711fff218b23268ad75321c6673ea01 211 SMART SM00421 146 203 3.9E-16 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17205 4711fff218b23268ad75321c6673ea01 211 SUPERFAMILY SSF52172 3 176 1.76E-34 T 18-10-2018 IPR011006 CheY-like superfamily RU84_03095 ff6a9a973a823d38d1a72635a83dccc8 331 Pfam PF10974 Protein of unknown function (DUF2804) 7 330 5.6E-64 T 18-10-2018 IPR021243 Protein of unknown function DUF2804 RU84_05570 72133025a138fd4b38351d19e022f58e 278 SUPERFAMILY SSF51730 3 276 3.73E-89 T 18-10-2018 IPR029041 FAD-linked oxidoreductase-like RU84_05570 72133025a138fd4b38351d19e022f58e 278 Gene3D G3DSA:3.20.20.220 1 278 2.4E-93 T 18-10-2018 RU84_05570 72133025a138fd4b38351d19e022f58e 278 Pfam PF02219 Methylenetetrahydrofolate reductase 3 274 2.9E-81 T 18-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RU84_05570 72133025a138fd4b38351d19e022f58e 278 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 7 273 5.9E-94 T 18-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 RU84_00105 b8e2121705e3d94c6de85b77935a8626 199 Gene3D G3DSA:3.40.30.10 1 78 8.5E-23 T 18-10-2018 RU84_00105 b8e2121705e3d94c6de85b77935a8626 199 SUPERFAMILY SSF52833 1 86 4.81E-21 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_00105 b8e2121705e3d94c6de85b77935a8626 199 Gene3D G3DSA:1.20.1050.10 81 196 9.7E-41 T 18-10-2018 RU84_00105 b8e2121705e3d94c6de85b77935a8626 199 Pfam PF00043 Glutathione S-transferase, C-terminal domain 120 189 1.6E-12 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_00105 b8e2121705e3d94c6de85b77935a8626 199 SUPERFAMILY SSF47616 72 198 3.55E-29 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_00105 b8e2121705e3d94c6de85b77935a8626 199 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 75 9.2E-12 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_16590 a2fe7b89092f45807e84f2d58d822372 109 Pfam PF13591 MerR HTH family regulatory protein 28 107 1.0E-17 T 18-10-2018 RU84_16590 a2fe7b89092f45807e84f2d58d822372 109 Gene3D G3DSA:1.10.1660.10 19 109 1.1E-23 T 18-10-2018 RU84_16200 71cf4612a0c380dc05cc69def428812b 311 PIRSF PIRSF026649 8 311 6.5E-89 T 18-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RU84_16200 71cf4612a0c380dc05cc69def428812b 311 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 9 311 42.782 T 18-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 RU84_16200 71cf4612a0c380dc05cc69def428812b 311 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 302 5.6E-68 T 18-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 RU84_16200 71cf4612a0c380dc05cc69def428812b 311 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 11 311 1.3E-89 T 18-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 RU84_09005 000f5b96d47bf386a65f59aaa6d96224 351 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 14 345 1.5E-125 T 18-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RU84_09005 000f5b96d47bf386a65f59aaa6d96224 351 Gene3D G3DSA:3.40.50.10210 54 328 1.8E-122 T 18-10-2018 RU84_09005 000f5b96d47bf386a65f59aaa6d96224 351 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 10 347 33.775 T 18-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RU84_09005 000f5b96d47bf386a65f59aaa6d96224 351 Pfam PF02277 Phosphoribosyltransferase 8 345 1.2E-123 T 18-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RU84_09005 000f5b96d47bf386a65f59aaa6d96224 351 Gene3D G3DSA:1.10.1610.10 22 345 1.8E-122 T 18-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RU84_09005 000f5b96d47bf386a65f59aaa6d96224 351 SUPERFAMILY SSF52733 2 346 7.06E-111 T 18-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 RU84_00845 037e44e5300f363e98911079e977ea2b 430 Gene3D G3DSA:3.40.50.11720 32 213 1.5E-41 T 18-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 RU84_00845 037e44e5300f363e98911079e977ea2b 430 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 37 215 3.2E-54 T 18-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 RU84_00845 037e44e5300f363e98911079e977ea2b 430 SUPERFAMILY SSF53756 177 411 1.26E-10 T 18-10-2018 RU84_00845 037e44e5300f363e98911079e977ea2b 430 Gene3D G3DSA:3.40.50.2000 219 410 2.4E-63 T 18-10-2018 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 PIRSF PIRSF001467 10 184 1.2E-28 T 18-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 23 179 6.9E-48 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 6.9E-13 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 6.9E-13 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 6.9E-13 T 18-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 Gene3D G3DSA:2.40.100.10 19 182 5.8E-62 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_18245 a47db3d400f2861e2f791c9567d35204 185 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 - T 18-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 RU84_18245 a47db3d400f2861e2f791c9567d35204 185 SUPERFAMILY SSF50891 18 180 5.26E-59 T 18-10-2018 IPR029000 Cyclophilin-like domain superfamily RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 SUPERFAMILY SSF48179 187 291 3.91E-29 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 SUPERFAMILY SSF48179 415 496 3.57E-17 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 8 186 4.3E-59 T 18-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 Gene3D G3DSA:3.40.50.720 1 190 5.3E-68 T 18-10-2018 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 SUPERFAMILY SSF51735 4 187 1.23E-54 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 415 496 2.1E-16 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 285 7.7E-28 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 Gene3D G3DSA:3.30.750.190 295 412 4.4E-93 T 18-10-2018 RU84_10485 32943997c3e7f20e5762c79aa6124ae1 507 Gene3D G3DSA:1.10.1040.50 191 495 4.4E-93 T 18-10-2018 RU84_12820 cacc48e9e772db1a73c8c226307beeee 230 SMART SM00382 34 223 8.7E-13 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_12820 cacc48e9e772db1a73c8c226307beeee 230 Pfam PF00005 ABC transporter 25 174 1.2E-34 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_12820 cacc48e9e772db1a73c8c226307beeee 230 SUPERFAMILY SSF52540 6 226 5.06E-67 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12820 cacc48e9e772db1a73c8c226307beeee 230 Gene3D G3DSA:3.40.50.300 4 229 3.0E-67 T 18-10-2018 RU84_12820 cacc48e9e772db1a73c8c226307beeee 230 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05695 e4602874d90530ae8de72e7fceb172d5 311 Gene3D G3DSA:3.40.50.300 1 236 9.0E-63 T 18-10-2018 RU84_05695 e4602874d90530ae8de72e7fceb172d5 311 SMART SM00382 30 213 5.2E-12 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_05695 e4602874d90530ae8de72e7fceb172d5 311 SUPERFAMILY SSF52540 4 228 8.91E-62 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_05695 e4602874d90530ae8de72e7fceb172d5 311 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_05695 e4602874d90530ae8de72e7fceb172d5 311 Pfam PF00005 ABC transporter 21 165 2.6E-32 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 5.1E-10 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 5.1E-10 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 5.1E-10 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 Pfam PF01022 Bacterial regulatory protein, arsR family 28 71 1.5E-11 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 SUPERFAMILY SSF46785 14 101 4.54E-23 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 Gene3D G3DSA:1.10.10.10 6 102 7.4E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_09505 d9fe41f62ab13f451ebb79f862595c90 102 SMART SM00418 19 97 1.0E-18 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_03510 b22c818d500c0934cb8564254112c3a8 323 Gene3D G3DSA:3.40.1090.20 53 146 3.2E-17 T 18-10-2018 RU84_03510 b22c818d500c0934cb8564254112c3a8 323 Gene3D G3DSA:3.40.1090.10 147 280 8.5E-19 T 18-10-2018 RU84_03510 b22c818d500c0934cb8564254112c3a8 323 Pfam PF01734 Patatin-like phospholipase 57 214 1.1E-27 T 18-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RU84_03510 b22c818d500c0934cb8564254112c3a8 323 SUPERFAMILY SSF52151 24 304 6.28E-54 T 18-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 204 7.6E-88 T 18-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 34 48 - T 18-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 Gene3D G3DSA:3.20.20.70 6 223 1.6E-82 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 PIRSF PIRSF001461 1 228 1.1E-101 T 18-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 SUPERFAMILY SSF51366 4 219 1.99E-74 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 217 2.5E-96 T 18-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RU84_15030 03ccf66d72b9666a25f2f73e44fc882b 228 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 137 159 - T 18-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 RU84_18860 352d943724c4bb126ca16e7077bc12c0 218 SUPERFAMILY SSF52540 34 192 5.96E-22 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18860 352d943724c4bb126ca16e7077bc12c0 218 Pfam PF00005 ABC transporter 40 90 7.4E-6 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_18860 352d943724c4bb126ca16e7077bc12c0 218 Gene3D G3DSA:3.40.50.300 10 217 4.5E-21 T 18-10-2018 RU84_18860 352d943724c4bb126ca16e7077bc12c0 218 SMART SM00382 48 212 4.0E-10 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_17815 d18cb6cea8c6cf4b1ec099422acb83fd 479 PIRSF PIRSF006060 3 478 6.6E-70 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_17815 d18cb6cea8c6cf4b1ec099422acb83fd 479 ProSitePatterns PS00218 Amino acid permeases signature. 49 79 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_17815 d18cb6cea8c6cf4b1ec099422acb83fd 479 Pfam PF00324 Amino acid permease 24 466 8.1E-107 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_17815 d18cb6cea8c6cf4b1ec099422acb83fd 479 Gene3D G3DSA:1.20.1740.10 14 476 4.7E-64 T 18-10-2018 RU84_06605 3fe735d81627529aa01946090c03088a 154 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 28 149 9.7E-23 T 18-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 RU84_06605 3fe735d81627529aa01946090c03088a 154 Pfam PF13994 PgaD-like protein 26 148 6.0E-22 T 18-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 RU84_11405 5cab56cd138103f9741b53edd41d0ecc 259 Gene3D G3DSA:1.10.1040.20 156 256 1.2E-33 T 18-10-2018 IPR037108 TM1727-like, C-terminal domain superfamily RU84_11405 5cab56cd138103f9741b53edd41d0ecc 259 SUPERFAMILY SSF48179 159 257 3.74E-24 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_11405 5cab56cd138103f9741b53edd41d0ecc 259 Pfam PF10728 Domain of unknown function (DUF2520) 126 250 9.7E-30 T 18-10-2018 IPR018931 Domain of unknown function DUF2520 RU84_11405 5cab56cd138103f9741b53edd41d0ecc 259 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 88 3.4E-11 T 18-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal RU84_11405 5cab56cd138103f9741b53edd41d0ecc 259 SUPERFAMILY SSF51735 2 157 5.11E-31 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_11405 5cab56cd138103f9741b53edd41d0ecc 259 Gene3D G3DSA:3.40.50.720 1 155 2.4E-44 T 18-10-2018 RU84_09425 7902929b6a7271f0741e82913403f4d4 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 134 2.0E-24 T 18-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RU84_09425 7902929b6a7271f0741e82913403f4d4 142 Gene3D G3DSA:3.30.420.270 60 131 4.4E-7 T 18-10-2018 RU84_01490 7fc3b6f5c0fb4378abfd82df42d7a0d2 196 Gene3D G3DSA:1.20.1440.20 19 195 1.6E-64 T 18-10-2018 IPR023353 LemA-like domain superfamily RU84_01490 7fc3b6f5c0fb4378abfd82df42d7a0d2 196 Pfam PF04011 LemA family 14 195 2.8E-67 T 18-10-2018 IPR007156 LemA RU84_01490 7fc3b6f5c0fb4378abfd82df42d7a0d2 196 SUPERFAMILY SSF140478 27 184 1.27E-52 T 18-10-2018 IPR023353 LemA-like domain superfamily RU84_12165 ec94209b316e593a3868cc23056324d3 133 Hamap MF_00048 UPF0102 protein YraN [yraN]. 4 115 19.798 T 18-10-2018 IPR003509 Uncharacterised protein family UPF0102 RU84_12165 ec94209b316e593a3868cc23056324d3 133 SUPERFAMILY SSF52980 6 105 3.43E-20 T 18-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RU84_12165 ec94209b316e593a3868cc23056324d3 133 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 5 111 9.6E-28 T 18-10-2018 IPR003509 Uncharacterised protein family UPF0102 RU84_12165 ec94209b316e593a3868cc23056324d3 133 Pfam PF02021 Uncharacterised protein family UPF0102 11 101 3.7E-24 T 18-10-2018 IPR003509 Uncharacterised protein family UPF0102 RU84_12165 ec94209b316e593a3868cc23056324d3 133 Gene3D G3DSA:3.40.1350.10 10 131 7.6E-30 T 18-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 RU84_17405 581fbe07cbcad5ba955830ca6f921843 419 Pfam PF13449 Esterase-like activity of phytase 74 393 4.8E-56 T 18-10-2018 IPR027372 Phytase-like domain RU84_01305 d533efb1b3bcae0db9be02dc4bf1b18a 203 Pfam PF04191 Phospholipid methyltransferase 43 136 1.2E-11 T 18-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 RU84_01305 d533efb1b3bcae0db9be02dc4bf1b18a 203 Gene3D G3DSA:1.20.120.1630 6 151 3.5E-20 T 18-10-2018 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 329 64.029 T 18-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 SUPERFAMILY SSF53067 101 307 6.15E-44 T 18-10-2018 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 Gene3D G3DSA:3.30.420.40 129 291 1.2E-126 T 18-10-2018 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 Gene3D G3DSA:3.30.420.40 3 313 1.2E-126 T 18-10-2018 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 SUPERFAMILY SSF53067 3 121 7.12E-30 T 18-10-2018 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 18-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 312 5.3E-133 T 18-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 RU84_06025 32563372b58a1e648ca098d1f5555e35 336 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 304 3.9E-118 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 261 270 3.6E-49 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 3.6E-49 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 3.6E-49 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 3.6E-49 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.6E-49 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 3.6E-49 T 18-10-2018 IPR017861 Kae1/TsaD family RU84_06025 32563372b58a1e648ca098d1f5555e35 336 Pfam PF00814 Glycoprotease family 25 305 2.3E-102 T 18-10-2018 IPR000905 Gcp-like domain RU84_01575 ab7d60b8cb64b2f5a59c6eb3558bc9c6 1284 SUPERFAMILY SSF53300 49 162 1.61E-8 T 18-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RU84_01575 ab7d60b8cb64b2f5a59c6eb3558bc9c6 1284 Pfam PF13519 von Willebrand factor type A domain 51 160 3.8E-8 T 18-10-2018 IPR002035 von Willebrand factor, type A RU84_01575 ab7d60b8cb64b2f5a59c6eb3558bc9c6 1284 Pfam PF05567 Neisseria PilC beta-propeller domain 715 964 1.7E-14 T 18-10-2018 IPR008707 PilC beta-propeller domain RU84_01575 ab7d60b8cb64b2f5a59c6eb3558bc9c6 1284 Gene3D G3DSA:3.40.50.410 48 173 2.7E-10 T 18-10-2018 IPR036465 von Willebrand factor A-like domain superfamily RU84_01575 ab7d60b8cb64b2f5a59c6eb3558bc9c6 1284 SUPERFAMILY SSF50998 865 1029 9.16E-5 T 18-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 SUPERFAMILY SSF49265 670 740 3.59E-6 T 18-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 3521 3598 1.3E-5 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 1363 1470 8.7E-12 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 2451 2556 9.6E-11 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 1927 2037 1.6E-9 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 2170 2295 8.6E-10 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 3342 3448 9.3E-10 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 1606 1697 2.5E-13 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:1.20.5.340 1698 1765 2.0E-6 T 18-10-2018 RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:2.60.40.10 665 753 3.4E-6 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Gene3D G3DSA:2.60.120.260 2756 2912 5.8E-8 T 18-10-2018 IPR008979 Galactose-binding-like domain superfamily RU84_18985 d28aeb43ea828dbc5cf9e4fa4f5c5707 3727 Pfam PF13550 Putative phage tail protein 367 517 3.6E-24 T 18-10-2018 IPR032876 Tip attachment protein J RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 SMART SM00388 656 724 1.1E-16 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 SUPERFAMILY SSF52402 251 368 1.59E-7 T 18-10-2018 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 SUPERFAMILY SSF52540 21 190 7.31E-7 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Gene3D G3DSA:3.30.450.40 512 648 3.4E-21 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Gene3D G3DSA:3.40.50.300 19 227 2.5E-95 T 18-10-2018 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 SUPERFAMILY SSF47384 650 724 2.35E-16 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 773 880 4.6E-18 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Gene3D G3DSA:3.30.565.10 736 880 4.7E-30 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 865 878 2.5E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 840 858 2.5E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 806 820 2.5E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 824 834 2.5E-13 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 229 1.8E-92 T 18-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 SMART SM00387 768 881 2.1E-24 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Gene3D G3DSA:1.10.287.130 649 723 3.2E-18 T 18-10-2018 RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Pfam PF13493 Domain of unknown function (DUF4118) 403 500 2.5E-18 T 18-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Gene3D G3DSA:1.20.120.620 394 500 1.4E-18 T 18-10-2018 IPR038318 KdpD, transmembrane domain superfamily RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Gene3D G3DSA:3.40.50.620 228 370 1.0E-5 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Pfam PF00582 Universal stress protein family 251 366 3.1E-5 T 18-10-2018 IPR006016 UspA RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 SUPERFAMILY SSF55874 714 881 4.58E-33 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06710 96a916b7fb8f693ff53a7e7a7d9c2088 884 Pfam PF00512 His Kinase A (phospho-acceptor) domain 657 723 1.1E-14 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_01005 9437b826118130f66c74650e36d3dc50 430 Gene3D G3DSA:3.40.640.10 60 319 5.4E-148 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_01005 9437b826118130f66c74650e36d3dc50 430 SUPERFAMILY SSF53383 26 415 1.17E-124 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_01005 9437b826118130f66c74650e36d3dc50 430 PIRSF PIRSF000521 3 131 0.002 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01005 9437b826118130f66c74650e36d3dc50 430 PIRSF PIRSF000521 127 418 1.4E-45 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01005 9437b826118130f66c74650e36d3dc50 430 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01005 9437b826118130f66c74650e36d3dc50 430 Pfam PF00202 Aminotransferase class-III 26 413 1.5E-123 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_01005 9437b826118130f66c74650e36d3dc50 430 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 11 415 6.4E-173 T 18-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 RU84_01005 9437b826118130f66c74650e36d3dc50 430 Gene3D G3DSA:3.90.1150.10 9 411 5.4E-148 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 SUPERFAMILY SSF52980 923 1223 1.23E-61 T 18-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Pfam PF00580 UvrD/REP helicase N-terminal domain 19 471 2.8E-48 T 18-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Gene3D G3DSA:3.90.320.10 917 1229 5.8E-71 T 18-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Gene3D G3DSA:3.40.50.300 13 470 1.5E-74 T 18-10-2018 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Pfam PF13361 UvrD-like helicase C-terminal domain 479 857 9.4E-26 T 18-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 SUPERFAMILY SSF52540 15 860 4.94E-93 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Gene3D G3DSA:1.10.486.10 611 757 1.2E-71 T 18-10-2018 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 8 1224 15.816 T 18-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Gene3D G3DSA:3.40.50.300 484 864 1.2E-71 T 18-10-2018 RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Pfam PF12705 PD-(D/E)XK nuclease superfamily 986 1196 4.4E-6 T 18-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type RU84_16620 8192b4f226d44b2c4551c58618b0d81b 1232 Gene3D G3DSA:1.10.3170.10 162 380 1.5E-74 T 18-10-2018 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 Pfam PF00561 alpha/beta hydrolase fold 28 265 5.8E-24 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 SUPERFAMILY SSF53474 13 277 1.25E-51 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 PRINTS PR00412 Epoxide hydrolase signature 254 276 3.9E-12 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 PRINTS PR00412 Epoxide hydrolase signature 34 52 3.9E-12 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 PRINTS PR00412 Epoxide hydrolase signature 221 237 3.9E-12 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 PRINTS PR00412 Epoxide hydrolase signature 99 112 3.9E-12 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 PRINTS PR00412 Epoxide hydrolase signature 54 69 3.9E-12 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_00060 9e8fdb56a17500d4501b242d1afc6613 280 Gene3D G3DSA:3.40.50.1820 7 275 6.4E-55 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_12525 5277d3341abc71ba9cc4377da402dc66 61 SUPERFAMILY SSF47413 1 54 3.21E-9 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_12525 5277d3341abc71ba9cc4377da402dc66 61 Gene3D G3DSA:1.10.260.40 1 59 3.0E-8 T 18-10-2018 RU84_12525 5277d3341abc71ba9cc4377da402dc66 61 Pfam PF14549 DNA-binding transcriptional regulator Cro 16 51 1.1E-9 T 18-10-2018 RU84_11735 fe7703f2d4c8f605f7179d5cd2f0e5d2 452 Gene3D G3DSA:1.20.1250.20 14 215 3.4E-48 T 18-10-2018 RU84_11735 fe7703f2d4c8f605f7179d5cd2f0e5d2 452 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 31 440 1.1E-140 T 18-10-2018 RU84_11735 fe7703f2d4c8f605f7179d5cd2f0e5d2 452 Gene3D G3DSA:1.20.1250.20 246 447 2.6E-33 T 18-10-2018 RU84_11735 fe7703f2d4c8f605f7179d5cd2f0e5d2 452 SUPERFAMILY SSF103473 14 447 6.54E-84 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_11735 fe7703f2d4c8f605f7179d5cd2f0e5d2 452 Pfam PF07690 Major Facilitator Superfamily 29 322 2.2E-53 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_11735 fe7703f2d4c8f605f7179d5cd2f0e5d2 452 PIRSF PIRSF002808 2 451 1.8E-45 T 18-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 RU84_02015 766187e2e2e374bc137dc7676879ab35 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 2 200 32.569 T 18-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02015 766187e2e2e374bc137dc7676879ab35 200 SUPERFAMILY SSF52166 7 196 1.96E-68 T 18-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02015 766187e2e2e374bc137dc7676879ab35 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 196 2.1E-71 T 18-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02015 766187e2e2e374bc137dc7676879ab35 200 Gene3D G3DSA:3.40.1370.10 3 199 3.0E-65 T 18-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 RU84_02015 766187e2e2e374bc137dc7676879ab35 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 196 1.9E-61 T 18-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PIRSF PIRSF000724 1 395 4.7E-127 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 SUPERFAMILY SSF53748 2 392 1.88E-138 T 18-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 18-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 Pfam PF00162 Phosphoglycerate kinase 6 383 1.1E-138 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 Gene3D G3DSA:3.40.50.1260 165 383 1.0E-161 T 18-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 38.188 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 Gene3D G3DSA:3.40.50.1260 10 389 1.0E-161 T 18-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_09480 c5797a6d2acdf9457afae4336e00a506 395 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 4.4E-80 T 18-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 RU84_14230 0015963b8ea6cafcda22179d123bdece 124 Gene3D G3DSA:1.10.260.40 2 87 2.2E-6 T 18-10-2018 RU84_14230 0015963b8ea6cafcda22179d123bdece 124 SUPERFAMILY SSF47413 7 89 1.13E-12 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_07910 7fb21007764d2c931d421e805ef37460 223 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 18-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 RU84_07910 7fb21007764d2c931d421e805ef37460 223 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 220 5.9E-122 T 18-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 RU84_07910 7fb21007764d2c931d421e805ef37460 223 Gene3D G3DSA:3.40.1080.10 1 218 1.4E-79 T 18-10-2018 RU84_07910 7fb21007764d2c931d421e805ef37460 223 SMART SM00882 6 219 3.3E-81 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_07910 7fb21007764d2c931d421e805ef37460 223 Pfam PF01144 Coenzyme A transferase 8 218 1.8E-73 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_07910 7fb21007764d2c931d421e805ef37460 223 SUPERFAMILY SSF100950 2 221 1.56E-79 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_08670 f617977726e0c65764b15dcca553c04a 731 Pfam PF07715 TonB-dependent Receptor Plug Domain 78 177 5.7E-10 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_08670 f617977726e0c65764b15dcca553c04a 731 Gene3D G3DSA:2.170.130.10 59 187 4.2E-22 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_08670 f617977726e0c65764b15dcca553c04a 731 Pfam PF00593 TonB dependent receptor 270 729 3.1E-39 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_08670 f617977726e0c65764b15dcca553c04a 731 Gene3D G3DSA:2.40.170.20 188 731 2.6E-80 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_08670 f617977726e0c65764b15dcca553c04a 731 SUPERFAMILY SSF56935 41 731 2.81E-98 T 18-10-2018 RU84_08670 f617977726e0c65764b15dcca553c04a 731 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 80 731 4.8E-115 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_08670 f617977726e0c65764b15dcca553c04a 731 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 714 731 - T 18-10-2018 IPR010917 TonB-dependent receptor, conserved site RU84_04005 18f554505959dacf1234b18dd40447a7 113 Gene3D G3DSA:1.10.10.10 13 113 3.9E-33 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_04005 18f554505959dacf1234b18dd40447a7 113 SUPERFAMILY SSF46767 15 98 4.45E-24 T 18-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RU84_04005 18f554505959dacf1234b18dd40447a7 113 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 16 97 3.9E-24 T 18-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RU84_05710 795d3d73e4c683f874f9139d2e04594e 228 SUPERFAMILY SSF53098 3 200 3.85E-21 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_05710 795d3d73e4c683f874f9139d2e04594e 228 Gene3D G3DSA:3.30.420.10 3 187 1.5E-20 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_05710 795d3d73e4c683f874f9139d2e04594e 228 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 187 213 3.4E-5 T 18-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor RU84_05710 795d3d73e4c683f874f9139d2e04594e 228 SMART SM00479 2 170 0.0043 T 18-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III RU84_07855 f1c3e0c25a4b9dd27d77a408c995e619 135 SUPERFAMILY SSF54427 8 114 6.58E-22 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_07855 f1c3e0c25a4b9dd27d77a408c995e619 135 Pfam PF12680 SnoaL-like domain 11 107 4.7E-9 T 18-10-2018 IPR037401 SnoaL-like domain RU84_07855 f1c3e0c25a4b9dd27d77a408c995e619 135 Gene3D G3DSA:3.10.450.50 4 133 9.7E-45 T 18-10-2018 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 SUPERFAMILY SSF57938 134 209 1.31E-21 T 18-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 SUPERFAMILY SSF46565 1 106 1.57E-37 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Pfam PF00684 DnaJ central domain 147 207 9.7E-14 T 18-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 18-10-2018 IPR018253 DnaJ domain, conserved site RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Pfam PF01556 DnaJ C terminal domain 121 332 4.2E-41 T 18-10-2018 IPR002939 Chaperone DnaJ, C-terminal RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 PRINTS PR00625 DnaJ domain signature 42 62 7.3E-34 T 18-10-2018 IPR001623 DnaJ domain RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 PRINTS PR00625 DnaJ domain signature 62 81 7.3E-34 T 18-10-2018 IPR001623 DnaJ domain RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 PRINTS PR00625 DnaJ domain signature 7 25 7.3E-34 T 18-10-2018 IPR001623 DnaJ domain RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 PRINTS PR00625 DnaJ domain signature 25 40 7.3E-34 T 18-10-2018 IPR001623 DnaJ domain RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 348 1.1E-140 T 18-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 SUPERFAMILY SSF49493 113 260 8.37E-20 T 18-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 SUPERFAMILY SSF49493 258 343 5.49E-22 T 18-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 SMART SM00271 4 62 1.8E-35 T 18-10-2018 IPR001623 DnaJ domain RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Gene3D G3DSA:2.10.230.10 147 207 3.9E-37 T 18-10-2018 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 369 41.127 T 18-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Gene3D G3DSA:2.60.260.20 117 248 3.9E-37 T 18-10-2018 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Gene3D G3DSA:1.10.287.110 1 114 5.4E-40 T 18-10-2018 IPR036869 Chaperone J-domain superfamily RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Gene3D G3DSA:2.60.260.20 253 364 1.9E-28 T 18-10-2018 RU84_00185 67973b17edd31d8a2879d7ef5178a588 370 Pfam PF00226 DnaJ domain 5 67 2.7E-30 T 18-10-2018 IPR001623 DnaJ domain RU84_15320 2d6c5324a48c83b0f61957c4fb78a898 142 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 4 113 3.0E-7 T 18-10-2018 IPR020143 Uncharacterised protein family, RP436 RU84_15320 2d6c5324a48c83b0f61957c4fb78a898 142 Pfam PF09335 SNARE associated Golgi protein 25 133 1.9E-13 T 18-10-2018 IPR032816 SNARE associated Golgi protein RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 Gene3D G3DSA:1.10.10.10 75 159 5.0E-34 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 SUPERFAMILY SSF46767 77 158 5.36E-30 T 18-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 158 42.762 T 18-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 79 158 1.4E-30 T 18-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 SUPERFAMILY SSF53155 4 83 1.67E-17 T 18-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 3 75 1.8E-12 T 18-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 78 157 6.5E-33 T 18-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 RU84_14995 e4f238bc6a0d0b1f74b01ab63519bf92 159 Gene3D G3DSA:3.30.160.70 2 74 2.3E-17 T 18-10-2018 RU84_05640 07964b3cd0b585377fcdb0db7ae3da25 161 Pfam PF11948 Protein of unknown function (DUF3465) 47 161 7.3E-52 T 18-10-2018 IPR021856 Protein of unknown function DUF3465 RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 Gene3D G3DSA:3.30.70.270 252 431 3.0E-52 T 18-10-2018 RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 SMART SM00052 429 674 1.0E-105 T 18-10-2018 IPR001633 EAL domain RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 Pfam PF00563 EAL domain 435 669 6.2E-70 T 18-10-2018 IPR001633 EAL domain RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 254 417 5.0E-38 T 18-10-2018 IPR000160 GGDEF domain RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 Pfam PF00990 Diguanylate cyclase, GGDEF domain 259 414 5.3E-42 T 18-10-2018 IPR000160 GGDEF domain RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 SUPERFAMILY SSF141868 435 677 1.96E-85 T 18-10-2018 IPR035919 EAL domain superfamily RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 SMART SM00267 247 418 1.5E-51 T 18-10-2018 IPR000160 GGDEF domain RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 SUPERFAMILY SSF55073 263 419 5.65E-47 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_15735 acd813195a8d2957d80ad92b8d1a9058 684 Gene3D G3DSA:3.20.20.450 432 680 3.0E-92 T 18-10-2018 IPR035919 EAL domain superfamily RU84_09445 f032d44bc54b1b1ad3f594b225187079 210 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 208 2.3E-49 T 18-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RU84_09445 f032d44bc54b1b1ad3f594b225187079 210 PIRSF PIRSF003078 1 210 4.7E-51 T 18-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RU84_09445 f032d44bc54b1b1ad3f594b225187079 210 Pfam PF02527 rRNA small subunit methyltransferase G 26 204 2.3E-51 T 18-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RU84_09445 f032d44bc54b1b1ad3f594b225187079 210 Gene3D G3DSA:3.40.50.150 3 210 2.5E-64 T 18-10-2018 RU84_09445 f032d44bc54b1b1ad3f594b225187079 210 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 206 26.817 T 18-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 RU84_09445 f032d44bc54b1b1ad3f594b225187079 210 SUPERFAMILY SSF53335 7 209 1.44E-34 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_14510 567c98285fc36bdd0cf779b8c47b2540 244 Gene3D G3DSA:3.40.50.1820 8 239 3.6E-20 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_14510 567c98285fc36bdd0cf779b8c47b2540 244 SUPERFAMILY SSF53474 7 238 1.91E-17 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 309 325 8.3E-16 T 18-10-2018 RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 8.3E-16 T 18-10-2018 RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 309 8.3E-16 T 18-10-2018 RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.3E-16 T 18-10-2018 RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 Pfam PF01494 FAD binding domain 7 340 8.4E-22 T 18-10-2018 IPR002938 FAD-binding domain GO:0071949 RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 Gene3D G3DSA:3.30.9.30 38 288 6.6E-53 T 18-10-2018 RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 SUPERFAMILY SSF51905 7 395 1.23E-53 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_16660 3c1303bd3bb8276cfd9a29eb6c06d579 437 Gene3D G3DSA:3.50.50.60 7 355 6.6E-53 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08855 9040d3164e75d9af4f1f70f51beae072 109 Gene3D G3DSA:3.30.1310.10 1 109 5.8E-35 T 18-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RU84_08855 9040d3164e75d9af4f1f70f51beae072 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 98 21.709 T 18-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RU84_08855 9040d3164e75d9af4f1f70f51beae072 109 Pfam PF02575 YbaB/EbfC DNA-binding family 7 99 3.9E-30 T 18-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RU84_08855 9040d3164e75d9af4f1f70f51beae072 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 105 3.7E-25 T 18-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RU84_08855 9040d3164e75d9af4f1f70f51beae072 109 SUPERFAMILY SSF82607 7 103 1.05E-29 T 18-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily RU84_08855 9040d3164e75d9af4f1f70f51beae072 109 PIRSF PIRSF004555 1 109 2.4E-32 T 18-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family RU84_05895 59cf8d17303066547854faec5cc96665 318 Hamap MF_01818 Ribonuclease BN [rbn]. 2 308 29.072 T 18-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 RU84_05895 59cf8d17303066547854faec5cc96665 318 Pfam PF00753 Metallo-beta-lactamase superfamily 29 95 4.8E-9 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_05895 59cf8d17303066547854faec5cc96665 318 Gene3D G3DSA:3.60.15.10 2 308 4.6E-76 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_05895 59cf8d17303066547854faec5cc96665 318 SUPERFAMILY SSF56281 4 309 1.66E-59 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_05465 5f98bc8e7c8adb2db112880881d5439f 910 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 181 1.3E-25 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_05465 5f98bc8e7c8adb2db112880881d5439f 910 Pfam PF00593 TonB dependent receptor 409 909 2.5E-39 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_05465 5f98bc8e7c8adb2db112880881d5439f 910 SUPERFAMILY SSF56935 52 910 5.49E-92 T 18-10-2018 RU84_05465 5f98bc8e7c8adb2db112880881d5439f 910 Gene3D G3DSA:2.170.130.10 46 185 5.8E-37 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 Gene3D G3DSA:3.40.190.10 166 267 1.1E-55 T 18-10-2018 RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.3E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 Gene3D G3DSA:3.40.190.10 92 294 1.1E-55 T 18-10-2018 RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 SUPERFAMILY SSF53850 90 299 2.76E-41 T 18-10-2018 RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 Pfam PF03466 LysR substrate binding domain 90 296 6.5E-40 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 SUPERFAMILY SSF46785 4 86 5.9E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_07665 9126ddcb7827c7f3e99648dae4ba1b64 300 Gene3D G3DSA:1.10.10.10 3 90 8.1E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 401 8.8E-140 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 Pfam PF02803 Thiolase, C-terminal domain 278 402 1.9E-46 T 18-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 Pfam PF00108 Thiolase, N-terminal domain 7 270 2.1E-80 T 18-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 4 403 2.3E-227 T 18-10-2018 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 18-10-2018 IPR020610 Thiolase, active site GO:0016747 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 ProSitePatterns PS00737 Thiolases signature 2. 349 365 - T 18-10-2018 IPR020613 Thiolase, conserved site GO:0016747 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 88 106 - T 18-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 Gene3D G3DSA:3.40.47.10 8 284 9.1E-159 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 SUPERFAMILY SSF53901 5 278 4.28E-83 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 SUPERFAMILY SSF53901 279 402 6.76E-45 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 Gene3D G3DSA:3.40.47.10 143 400 9.1E-159 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_07920 6489112de0c22eb4f973ddebb7d794d2 403 PIRSF PIRSF000429 1 403 9.9E-133 T 18-10-2018 IPR002155 Thiolase GO:0016747 RU84_11145 8fe3826f4242e00b0161cc83837b9e76 148 SUPERFAMILY SSF46785 8 144 1.41E-37 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11145 8fe3826f4242e00b0161cc83837b9e76 148 Gene3D G3DSA:1.10.10.10 6 148 2.2E-41 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_11145 8fe3826f4242e00b0161cc83837b9e76 148 Pfam PF01638 HxlR-like helix-turn-helix 20 105 6.4E-21 T 18-10-2018 IPR002577 Helix-turn-helix, HxlR type RU84_01180 4f6fcb6b43a98070ce11dd97284ab2f0 209 Pfam PF06961 Protein of unknown function (DUF1294) 127 181 1.2E-20 T 18-10-2018 IPR010718 Protein of unknown function DUF1294 RU84_01180 4f6fcb6b43a98070ce11dd97284ab2f0 209 Pfam PF00313 'Cold-shock' DNA-binding domain 8 42 6.0E-8 T 18-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 RU84_01180 4f6fcb6b43a98070ce11dd97284ab2f0 209 SUPERFAMILY SSF50249 8 70 2.69E-11 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_01180 4f6fcb6b43a98070ce11dd97284ab2f0 209 SMART SM00357 5 69 0.0062 T 18-10-2018 IPR011129 Cold shock domain GO:0003676 RU84_01180 4f6fcb6b43a98070ce11dd97284ab2f0 209 Gene3D G3DSA:2.40.50.140 2 77 3.2E-12 T 18-10-2018 RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 Gene3D G3DSA:1.25.40.10 25 271 2.2E-35 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 SUPERFAMILY SSF81901 32 251 4.53E-25 T 18-10-2018 RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 SMART SM00671 60 95 7.9E-7 T 18-10-2018 IPR006597 Sel1-like repeat RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 SMART SM00671 96 132 7.9E-5 T 18-10-2018 IPR006597 Sel1-like repeat RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 SMART SM00671 207 242 0.063 T 18-10-2018 IPR006597 Sel1-like repeat RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 Pfam PF08238 Sel1 repeat 60 95 1.9E-5 T 18-10-2018 IPR006597 Sel1-like repeat RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 Pfam PF08238 Sel1 repeat 209 241 8.0 T 18-10-2018 IPR006597 Sel1-like repeat RU84_03320 be2ba44a6c5945d3a7cfab8fadbf0db8 274 Pfam PF08238 Sel1 repeat 97 132 1.5 T 18-10-2018 IPR006597 Sel1-like repeat RU84_12325 6616ad3a568ac219ce02b4085f5d2660 60 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 5 59 2.5E-24 T 18-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 RU84_12325 6616ad3a568ac219ce02b4085f5d2660 60 SUPERFAMILY SSF54786 2 60 1.33E-19 T 18-10-2018 RU84_12325 6616ad3a568ac219ce02b4085f5d2660 60 Gene3D G3DSA:3.30.920.30 1 59 9.5E-33 T 18-10-2018 IPR038570 HicA superfamily RU84_06840 c80441ba3d20f9eb627a264f65f4b72b 285 SUPERFAMILY SSF103481 38 135 7.45E-11 T 18-10-2018 RU84_06840 c80441ba3d20f9eb627a264f65f4b72b 285 Pfam PF00892 EamA-like transporter family 148 280 8.9E-8 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_06840 c80441ba3d20f9eb627a264f65f4b72b 285 Pfam PF00892 EamA-like transporter family 2 132 1.0E-13 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_06840 c80441ba3d20f9eb627a264f65f4b72b 285 SUPERFAMILY SSF103481 182 282 8.11E-7 T 18-10-2018 RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 Pfam PF00691 OmpA family 56 151 3.8E-23 T 18-10-2018 IPR006665 OmpA-like domain RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 PRINTS PR01021 OMPA domain signature 57 79 1.1E-15 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 PRINTS PR01021 OMPA domain signature 87 102 1.1E-15 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 PRINTS PR01021 OMPA domain signature 102 118 1.1E-15 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 SUPERFAMILY SSF103088 43 159 9.16E-37 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 ProSitePatterns PS01068 OmpA-like domain. 89 133 - T 18-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RU84_02540 cc5b3ab56c0b94760f3fb3b6b1514287 159 Gene3D G3DSA:3.30.1330.60 25 158 5.6E-41 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 SMART SM00226 5 160 2.7E-40 T 18-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 Gene3D G3DSA:3.40.50.2300 1 166 3.3E-51 T 18-10-2018 RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 SUPERFAMILY SSF52788 3 161 2.35E-47 T 18-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 132 147 2.5E-16 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 126 2.5E-16 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 7 24 2.5E-16 T 18-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 RU84_07190 cfe9bc63c507b70ef0a9f7dcf04128c9 167 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 7 157 1.4E-35 T 18-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RU84_08625 74a7e88ca285e6b971095f42f88e2f77 234 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 18-10-2018 IPR004163 Coenzyme A transferase binding site GO:0008410 Reactome: R-HSA-77108 RU84_08625 74a7e88ca285e6b971095f42f88e2f77 234 Gene3D G3DSA:3.40.1080.10 1 216 1.3E-96 T 18-10-2018 RU84_08625 74a7e88ca285e6b971095f42f88e2f77 234 SMART SM00882 5 217 2.6E-90 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08625 74a7e88ca285e6b971095f42f88e2f77 234 Pfam PF01144 Coenzyme A transferase 6 217 4.5E-78 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08625 74a7e88ca285e6b971095f42f88e2f77 234 SUPERFAMILY SSF100950 2 226 7.67E-87 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_08625 74a7e88ca285e6b971095f42f88e2f77 234 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 217 6.9E-78 T 18-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 18-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 2.7E-11 T 18-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 103 112 2.7E-11 T 18-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 94 102 2.7E-11 T 18-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 140 5.5E-44 T 18-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 141 23.567 T 18-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 Gene3D G3DSA:1.10.1200.120 3 143 2.1E-41 T 18-10-2018 IPR036019 Gated mechanosensitive channel RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 SUPERFAMILY SSF81330 12 136 2.48E-34 T 18-10-2018 IPR036019 Gated mechanosensitive channel RU84_03280 ac3fba9dc036e2adfff370d4a29d3738 143 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 142 3.0E-37 T 18-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Hamap MF_01113 DNA polymerase IV [dinB]. 1 350 37.283 T 18-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Pfam PF11799 impB/mucB/samB family C-terminal domain 232 345 2.1E-13 T 18-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 SUPERFAMILY SSF56672 1 233 9.78E-93 T 18-10-2018 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Pfam PF00817 impB/mucB/samB family 7 153 1.2E-51 T 18-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Gene3D G3DSA:3.30.1490.100 239 346 3.6E-19 T 18-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 SUPERFAMILY SSF100879 237 336 6.08E-21 T 18-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Gene3D G3DSA:1.10.150.20 165 228 4.5E-20 T 18-10-2018 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Gene3D G3DSA:2.30.40.20 21 72 1.4E-63 T 18-10-2018 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Pfam PF11798 IMS family HHH motif 168 194 1.1E-7 T 18-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 RU84_17385 f4e6aea4a2b245ded579df6a6704914e 351 Gene3D G3DSA:3.30.70.270 4 163 1.4E-63 T 18-10-2018 RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 18-10-2018 IPR018336 Ribonuclease PH, conserved site RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 SUPERFAMILY SSF55666 154 236 5.76E-24 T 18-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 44.024 T 18-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 Gene3D G3DSA:3.30.230.70 10 237 1.5E-63 T 18-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 4.0E-115 T 18-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 SUPERFAMILY SSF54211 1 181 7.09E-46 T 18-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 224 1.3E-9 T 18-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_18090 f429e7aab9b18312a2ebc6e01958cce5 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.3E-23 T 18-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 RU84_17700 83010dca46a6a2df66843e338a8142b5 102 SUPERFAMILY SSF82657 2 88 2.75E-26 T 18-10-2018 IPR036065 BolA-like superfamily RU84_17700 83010dca46a6a2df66843e338a8142b5 102 Gene3D G3DSA:3.30.300.90 2 90 2.3E-26 T 18-10-2018 RU84_17700 83010dca46a6a2df66843e338a8142b5 102 PIRSF PIRSF003113 1 98 3.5E-32 T 18-10-2018 IPR002634 BolA protein RU84_17700 83010dca46a6a2df66843e338a8142b5 102 Pfam PF01722 BolA-like protein 12 85 6.1E-25 T 18-10-2018 IPR002634 BolA protein RU84_05365 8cdb4d102cea8175134f4ae554f24f24 383 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 226 247 - T 18-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 RU84_05365 8cdb4d102cea8175134f4ae554f24f24 383 Hamap MF_00609 Histidine decarboxylase [hdc]. 2 374 67.96 T 18-10-2018 IPR023523 Histidine decarboxylase, bacteria GO:0004398|GO:0030170 KEGG: 00340+4.1.1.22|MetaCyc: PWY-6173 RU84_05365 8cdb4d102cea8175134f4ae554f24f24 383 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 112 311 6.4E-25 T 18-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 RU84_05365 8cdb4d102cea8175134f4ae554f24f24 383 Gene3D G3DSA:3.40.640.10 44 287 4.3E-54 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_05365 8cdb4d102cea8175134f4ae554f24f24 383 SUPERFAMILY SSF53383 35 370 2.3E-75 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_03270 81135b014f4d674a4eef82b8d0927925 452 Pfam PF00860 Permease family 26 416 2.4E-99 T 18-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RU84_03270 81135b014f4d674a4eef82b8d0927925 452 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 22 446 6.1E-123 T 18-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RU84_03270 81135b014f4d674a4eef82b8d0927925 452 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 364 384 - T 18-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RU84_03270 81135b014f4d674a4eef82b8d0927925 452 TIGRFAM TIGR03173 pbuX: xanthine permease 29 448 2.7E-127 T 18-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RU84_07590 63e789f52c5a84a027269794cc6617e2 480 Pfam PF07995 Glucose / Sorbosone dehydrogenase 369 453 2.5E-9 T 18-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RU84_07590 63e789f52c5a84a027269794cc6617e2 480 Pfam PF07995 Glucose / Sorbosone dehydrogenase 51 348 1.4E-54 T 18-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RU84_07590 63e789f52c5a84a027269794cc6617e2 480 TIGRFAM TIGR03606 non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family 23 480 4.6E-240 T 18-10-2018 IPR019893 PQQ-dependent dehydrogenase, s-GDH family KEGG: 00030+1.1.5.2|MetaCyc: PWY-7165 RU84_07590 63e789f52c5a84a027269794cc6617e2 480 SUPERFAMILY SSF50952 34 456 1.07E-55 T 18-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RU84_07590 63e789f52c5a84a027269794cc6617e2 480 Gene3D G3DSA:2.120.10.30 26 480 1.3E-189 T 18-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 Gene3D G3DSA:3.40.50.300 11 296 7.1E-94 T 18-10-2018 RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 SUPERFAMILY SSF52540 6 231 5.06E-5 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 SUPERFAMILY SSF52540 8 151 1.77E-16 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 Pfam PF01715 IPP transferase 41 293 4.4E-79 T 18-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 Gene3D G3DSA:1.10.20.140 114 186 7.1E-94 T 18-10-2018 RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 296 2.1E-90 T 18-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RU84_06830 db1fa13ca398ece9926ff731ded642bb 314 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 307 29.269 T 18-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 RU84_19135 3125b7e88a1e344b4b4dac8b8633e543 903 SUPERFAMILY SSF52540 488 807 1.49E-19 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_19135 3125b7e88a1e344b4b4dac8b8633e543 903 Pfam PF03135 CagE, TrbE, VirB family, component of type IV transporter system 282 487 1.0E-21 T 18-10-2018 IPR018145 CagE, TrbE, VirB component of type IV transporter system, central domain GO:0005524 RU84_17630 93309edc71fe0560f6998d4c3905a626 222 Gene3D G3DSA:3.40.30.10 1 83 4.0E-30 T 18-10-2018 RU84_17630 93309edc71fe0560f6998d4c3905a626 222 Gene3D G3DSA:1.20.1050.10 84 208 1.4E-27 T 18-10-2018 RU84_17630 93309edc71fe0560f6998d4c3905a626 222 Pfam PF14497 Glutathione S-transferase, C-terminal domain 135 206 3.1E-8 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_17630 93309edc71fe0560f6998d4c3905a626 222 SUPERFAMILY SSF52833 5 80 3.47E-18 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_17630 93309edc71fe0560f6998d4c3905a626 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 73 7.6E-16 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_17630 93309edc71fe0560f6998d4c3905a626 222 SUPERFAMILY SSF47616 84 208 1.1E-20 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 SUPERFAMILY SSF55174 5 97 1.03E-17 T 18-10-2018 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 Gene3D G3DSA:3.30.70.1560 134 217 4.3E-49 T 18-10-2018 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 Gene3D G3DSA:3.30.70.580 68 235 4.3E-49 T 18-10-2018 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 105 119 - T 18-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 Pfam PF01479 S4 domain 4 48 1.4E-11 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 Gene3D G3DSA:3.10.290.10 1 58 3.1E-19 T 18-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 SUPERFAMILY SSF55120 66 235 3.74E-41 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 SMART SM00363 3 64 6.2E-9 T 18-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 231 5.2E-53 T 18-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 RU84_14485 fdd40895150e52f1e4ab073d9a88d372 307 Pfam PF00849 RNA pseudouridylate synthase 67 199 2.5E-16 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_11640 075754caece405862f34c20137d33722 322 Pfam PF03781 Sulfatase-modifying factor enzyme 1 52 320 2.9E-67 T 18-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 RU84_11640 075754caece405862f34c20137d33722 322 Gene3D G3DSA:3.90.1580.10 42 322 2.6E-82 T 18-10-2018 RU84_11640 075754caece405862f34c20137d33722 322 SUPERFAMILY SSF56436 53 320 2.59E-72 T 18-10-2018 IPR016187 C-type lectin fold RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 Gene3D G3DSA:3.30.565.10 311 458 8.3E-30 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 SUPERFAMILY SSF158472 189 237 4.45E-6 T 18-10-2018 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 Pfam PF00672 HAMP domain 186 235 8.8E-7 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 9 456 4.2E-143 T 18-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 SMART SM00387 349 458 7.1E-27 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 SMART SM00388 240 306 1.7E-13 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 447 7.6E-15 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 SMART SM00304 186 239 4.1E-10 T 18-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 SUPERFAMILY SSF47384 223 306 3.92E-16 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 SUPERFAMILY SSF55874 295 448 1.96E-30 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 1.4E-6 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 1.4E-6 T 18-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 Gene3D G3DSA:1.10.287.130 190 306 1.4E-23 T 18-10-2018 RU84_15595 5fba04a5bae1e4cb0c0cacd401387c15 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 306 2.3E-10 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_10500 710e75fb0a46f7cf450b19b6d23ee727 394 Gene3D G3DSA:1.20.1250.20 11 387 5.2E-36 T 18-10-2018 RU84_10500 710e75fb0a46f7cf450b19b6d23ee727 394 Pfam PF07690 Major Facilitator Superfamily 20 324 8.9E-22 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_10500 710e75fb0a46f7cf450b19b6d23ee727 394 SUPERFAMILY SSF103473 11 384 4.32E-39 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_04870 c8e40a68624deb6abf58a06085f2f912 218 SUPERFAMILY SSF56784 13 206 1.74E-20 T 18-10-2018 IPR036412 HAD-like superfamily RU84_04870 c8e40a68624deb6abf58a06085f2f912 218 Gene3D G3DSA:3.40.50.1000 14 208 2.3E-37 T 18-10-2018 IPR023214 HAD superfamily RU84_04870 c8e40a68624deb6abf58a06085f2f912 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 15 193 4.3E-28 T 18-10-2018 RU84_04870 c8e40a68624deb6abf58a06085f2f912 218 Gene3D G3DSA:1.20.1440.100 26 97 2.3E-37 T 18-10-2018 RU84_04870 c8e40a68624deb6abf58a06085f2f912 218 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 14 205 3.2E-32 T 18-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RU84_04870 c8e40a68624deb6abf58a06085f2f912 218 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 14 196 4.5E-23 T 18-10-2018 RU84_00940 3867533e247237cc239658adfd97fa24 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 7.3E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00940 3867533e247237cc239658adfd97fa24 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 7.3E-5 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00940 3867533e247237cc239658adfd97fa24 200 SUPERFAMILY SSF48498 82 196 1.84E-23 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_00940 3867533e247237cc239658adfd97fa24 200 Gene3D G3DSA:1.10.357.10 1 200 5.5E-71 T 18-10-2018 RU84_00940 3867533e247237cc239658adfd97fa24 200 SUPERFAMILY SSF46689 3 78 1.95E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_00940 3867533e247237cc239658adfd97fa24 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 55 2.2E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00940 3867533e247237cc239658adfd97fa24 200 Pfam PF16925 Bacterial transcriptional repressor C-terminal 102 193 2.9E-12 T 18-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal RU84_10520 a5a7f2e4cf13b6fd4560cb7a81ef7105 405 Gene3D G3DSA:3.30.1540.10 242 333 1.7E-138 T 18-10-2018 RU84_10520 a5a7f2e4cf13b6fd4560cb7a81ef7105 405 Pfam PF02515 CoA-transferase family III 4 382 4.5E-133 T 18-10-2018 IPR003673 CoA-transferase family III GO:0003824 RU84_10520 a5a7f2e4cf13b6fd4560cb7a81ef7105 405 SUPERFAMILY SSF89796 1 404 3.92E-140 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_10520 a5a7f2e4cf13b6fd4560cb7a81ef7105 405 Gene3D G3DSA:3.40.50.10540 4 398 1.7E-138 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 Pfam PF04551 GcpE protein 11 352 8.1E-133 T 18-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 Gene3D G3DSA:3.30.413.10 261 361 1.8E-27 T 18-10-2018 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 PIRSF PIRSF004640 1 362 1.1E-146 T 18-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 SUPERFAMILY SSF56014 264 352 1.36E-13 T 18-10-2018 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 8 351 4.6E-130 T 18-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 SUPERFAMILY SSF51717 15 208 1.73E-10 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 6 362 34.66 T 18-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 RU84_15850 b12bad0fdbd42ccf3c9276a7b0239cf8 371 Gene3D G3DSA:3.20.20.20 1 260 1.1E-103 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_10380 32440dd21d10478a79db231ef699c724 223 Pfam PF13649 Methyltransferase domain 46 141 3.9E-15 T 18-10-2018 RU84_10380 32440dd21d10478a79db231ef699c724 223 SUPERFAMILY SSF53335 9 221 4.65E-33 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_10380 32440dd21d10478a79db231ef699c724 223 Gene3D G3DSA:3.40.50.150 5 223 3.2E-39 T 18-10-2018 RU84_17625 14c51d3d10fd136ff35d8ee6b9f0e258 208 Gene3D G3DSA:3.30.70.1070 127 207 5.4E-16 T 18-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RU84_17625 14c51d3d10fd136ff35d8ee6b9f0e258 208 Pfam PF05036 Sporulation related domain 133 206 1.5E-17 T 18-10-2018 IPR007730 Sporulation-like domain GO:0042834 RU84_17625 14c51d3d10fd136ff35d8ee6b9f0e258 208 SUPERFAMILY SSF110997 131 206 3.79E-16 T 18-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RU84_05195 69837b0f4562325c457eb4a1084523d7 276 Gene3D G3DSA:3.10.350.10 51 105 8.0E-14 T 18-10-2018 IPR036779 LysM domain superfamily RU84_05195 69837b0f4562325c457eb4a1084523d7 276 SUPERFAMILY SSF51261 54 274 1.99E-44 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_05195 69837b0f4562325c457eb4a1084523d7 276 SMART SM00257 54 98 1.2E-12 T 18-10-2018 IPR018392 LysM domain RU84_05195 69837b0f4562325c457eb4a1084523d7 276 Pfam PF01551 Peptidase family M23 178 270 1.1E-27 T 18-10-2018 IPR016047 Peptidase M23 RU84_05195 69837b0f4562325c457eb4a1084523d7 276 Pfam PF01476 LysM domain 55 97 5.6E-13 T 18-10-2018 IPR018392 LysM domain RU84_05195 69837b0f4562325c457eb4a1084523d7 276 Gene3D G3DSA:2.70.70.10 143 274 3.8E-31 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_15225 937fcebe5eb2c2712c36a053a58eb75a 934 Pfam PF10101 Predicted membrane protein (DUF2339) 187 921 3.8E-97 T 18-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane RU84_06015 970cf8e0e3a61b518ebe7b4d0a956af9 148 SUPERFAMILY SSF89095 3 147 2.62E-39 T 18-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 RU84_06015 970cf8e0e3a61b518ebe7b4d0a956af9 148 Gene3D G3DSA:1.10.1510.10 1 91 2.3E-26 T 18-10-2018 RU84_06015 970cf8e0e3a61b518ebe7b4d0a956af9 148 Pfam PF09424 Yqey-like protein 5 147 2.1E-50 T 18-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 RU84_06015 970cf8e0e3a61b518ebe7b4d0a956af9 148 Gene3D G3DSA:1.10.10.410 92 148 3.1E-17 T 18-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 PRINTS PR00138 Matrixin signature 251 276 4.3E-11 T 18-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 PRINTS PR00138 Matrixin signature 58 73 4.3E-11 T 18-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 PRINTS PR00138 Matrixin signature 286 299 4.3E-11 T 18-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 Pfam PF00413 Matrixin 36 299 2.1E-13 T 18-10-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 SMART SM00235 168 300 7.4E-5 T 18-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 Gene3D G3DSA:3.40.390.10 128 305 4.6E-19 T 18-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 RU84_18285 91e763646388ae70acd8fbc4dae5cb5d 305 SUPERFAMILY SSF55486 231 302 3.42E-17 T 18-10-2018 RU84_17875 6a4a950715a6786625797032c4b4935f 409 SUPERFAMILY SSF53901 1 251 3.94E-55 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_17875 6a4a950715a6786625797032c4b4935f 409 SUPERFAMILY SSF53901 213 407 2.63E-60 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_17875 6a4a950715a6786625797032c4b4935f 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 364 1.0E-30 T 18-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RU84_17875 6a4a950715a6786625797032c4b4935f 409 SMART SM00825 Beta-ketoacyl synthase 4 409 4.5E-14 T 18-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RU84_17875 6a4a950715a6786625797032c4b4935f 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 18-10-2018 IPR018201 Beta-ketoacyl synthase, active site RU84_17875 6a4a950715a6786625797032c4b4935f 409 Gene3D G3DSA:3.40.47.10 4 257 7.0E-58 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_17875 6a4a950715a6786625797032c4b4935f 409 Gene3D G3DSA:3.40.47.10 258 408 3.3E-43 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_17875 6a4a950715a6786625797032c4b4935f 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 3.2E-39 T 18-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RU84_03690 d34bdbbe50f26527a694d2e5eeb50be1 305 SUPERFAMILY SSF52151 35 287 1.07E-57 T 18-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RU84_03690 d34bdbbe50f26527a694d2e5eeb50be1 305 Gene3D G3DSA:3.40.1090.20 159 211 3.3E-5 T 18-10-2018 RU84_03690 d34bdbbe50f26527a694d2e5eeb50be1 305 Pfam PF01734 Patatin-like phospholipase 41 198 2.0E-24 T 18-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RU84_03690 d34bdbbe50f26527a694d2e5eeb50be1 305 Gene3D G3DSA:3.40.1090.10 24 137 1.1E-24 T 18-10-2018 RU84_02910 30dca789a00d97f2aca7edf33434b827 594 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 13 68 1.3E-17 T 18-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 RU84_02910 30dca789a00d97f2aca7edf33434b827 594 Gene3D G3DSA:3.40.50.300 86 307 1.8E-19 T 18-10-2018 RU84_02910 30dca789a00d97f2aca7edf33434b827 594 Pfam PF17289 Terminase RNaseH-like domain 417 575 4.2E-28 T 18-10-2018 IPR035421 Terminase, large subunit gp17-like RU84_02910 30dca789a00d97f2aca7edf33434b827 594 Gene3D G3DSA:3.30.420.240 403 572 7.0E-11 T 18-10-2018 RU84_02910 30dca789a00d97f2aca7edf33434b827 594 Pfam PF03237 Terminase-like family 164 388 1.1E-50 T 18-10-2018 IPR004921 Terminase large subunit, T4likevirus-type RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 3.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 3.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 3.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 3.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 3.9E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 Gene3D G3DSA:3.40.50.720 2 261 5.9E-62 T 18-10-2018 RU84_01270 df57d0219441b189716648b8c117221b 296 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_01270 df57d0219441b189716648b8c117221b 296 Pfam PF00106 short chain dehydrogenase 16 205 2.0E-53 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 SUPERFAMILY SSF51735 13 236 2.34E-60 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 6.8E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 6.8E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_01270 df57d0219441b189716648b8c117221b 296 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 6.8E-11 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12990 d3f953a8d647611b6ce9fcaf0d2e1a6e 407 Gene3D G3DSA:1.20.1250.20 217 406 1.3E-31 T 18-10-2018 RU84_12990 d3f953a8d647611b6ce9fcaf0d2e1a6e 407 SUPERFAMILY SSF103473 5 406 3.27E-69 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_12990 d3f953a8d647611b6ce9fcaf0d2e1a6e 407 Gene3D G3DSA:1.20.1250.20 8 200 4.1E-34 T 18-10-2018 RU84_12990 d3f953a8d647611b6ce9fcaf0d2e1a6e 407 ProSitePatterns PS00216 Sugar transport proteins signature 1. 282 299 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_12990 d3f953a8d647611b6ce9fcaf0d2e1a6e 407 Pfam PF07690 Major Facilitator Superfamily 18 369 1.6E-48 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_13215 cad08088d2d2404ae4e611bd368c2bf2 859 SMART SM00490 431 513 5.8E-7 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_13215 cad08088d2d2404ae4e611bd368c2bf2 859 Gene3D G3DSA:3.40.50.300 349 529 1.7E-31 T 18-10-2018 RU84_13215 cad08088d2d2404ae4e611bd368c2bf2 859 SUPERFAMILY SSF52540 150 523 1.82E-30 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13215 cad08088d2d2404ae4e611bd368c2bf2 859 Pfam PF00270 DEAD/DEAH box helicase 143 280 8.2E-17 T 18-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RU84_13215 cad08088d2d2404ae4e611bd368c2bf2 859 SMART SM00487 138 323 9.3E-13 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_13215 cad08088d2d2404ae4e611bd368c2bf2 859 Gene3D G3DSA:3.40.50.300 119 300 1.0E-27 T 18-10-2018 RU84_05215 e9e0cec8f0fd8e4c904592f27d46cbb5 133 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 18-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RU84_05215 e9e0cec8f0fd8e4c904592f27d46cbb5 133 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 129 6.8E-67 T 18-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RU84_05215 e9e0cec8f0fd8e4c904592f27d46cbb5 133 Gene3D G3DSA:3.10.180.10 1 132 4.0E-51 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_05215 e9e0cec8f0fd8e4c904592f27d46cbb5 133 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 18-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 RU84_05215 e9e0cec8f0fd8e4c904592f27d46cbb5 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 1.6E-24 T 18-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RU84_05215 e9e0cec8f0fd8e4c904592f27d46cbb5 133 SUPERFAMILY SSF54593 1 126 1.88E-37 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 Gene3D G3DSA:3.40.50.2000 187 349 3.1E-46 T 18-10-2018 RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 12 365 34.351 T 18-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 12 148 1.4E-41 T 18-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 195 354 2.5E-36 T 18-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 Gene3D G3DSA:3.40.50.2000 9 186 1.5E-61 T 18-10-2018 RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 SUPERFAMILY SSF53756 10 364 4.35E-115 T 18-10-2018 RU84_00725 2056291a87d9994b2564ebd8dc068c4c 365 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 6 362 1.5E-105 T 18-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_02945 28a9e8460ad35d4f320685d9ad422231 327 Gene3D G3DSA:3.40.50.2000 1 151 4.9E-19 T 18-10-2018 RU84_02945 28a9e8460ad35d4f320685d9ad422231 327 Pfam PF00534 Glycosyl transferases group 1 157 289 5.3E-22 T 18-10-2018 IPR001296 Glycosyl transferase, family 1 RU84_02945 28a9e8460ad35d4f320685d9ad422231 327 Pfam PF13439 Glycosyltransferase Family 4 13 148 2.5E-15 T 18-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 RU84_02945 28a9e8460ad35d4f320685d9ad422231 327 Gene3D G3DSA:3.40.50.2000 152 306 1.5E-29 T 18-10-2018 RU84_02945 28a9e8460ad35d4f320685d9ad422231 327 SUPERFAMILY SSF53756 1 325 8.07E-56 T 18-10-2018 RU84_04455 acea5c78ca0c506e21b344bd9da70e4c 244 Pfam PF00753 Metallo-beta-lactamase superfamily 6 88 5.8E-8 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_04455 acea5c78ca0c506e21b344bd9da70e4c 244 Gene3D G3DSA:3.60.15.10 2 231 9.6E-53 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_04455 acea5c78ca0c506e21b344bd9da70e4c 244 SUPERFAMILY SSF56281 5 230 1.43E-42 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_10180 c9b78153de552a6831f0360f24158576 208 SUPERFAMILY SSF47616 84 204 3.48E-13 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_10180 c9b78153de552a6831f0360f24158576 208 Gene3D G3DSA:1.20.1050.10 87 195 1.8E-82 T 18-10-2018 RU84_10180 c9b78153de552a6831f0360f24158576 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 85 8.8E-15 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_10180 c9b78153de552a6831f0360f24158576 208 Pfam PF14834 Glutathione S-transferase, C-terminal domain 92 206 1.5E-46 T 18-10-2018 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|KEGG: 00983+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 RU84_10180 c9b78153de552a6831f0360f24158576 208 Gene3D G3DSA:3.40.30.10 8 203 1.8E-82 T 18-10-2018 RU84_10180 c9b78153de552a6831f0360f24158576 208 SUPERFAMILY SSF52833 7 91 7.18E-19 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_02325 ef949e7d6e1f907678636063ed63494d 201 Gene3D G3DSA:2.60.120.620 11 198 2.9E-48 T 18-10-2018 RU84_02325 ef949e7d6e1f907678636063ed63494d 201 SMART SM00702 30 194 3.6E-11 T 18-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 RU84_02325 ef949e7d6e1f907678636063ed63494d 201 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 106 194 1.8E-21 T 18-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 RU84_02020 f26acbe57a8e705ccbad17db0801a2bc 106 Pfam PF00276 Ribosomal protein L23 9 93 1.4E-28 T 18-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RU84_02020 f26acbe57a8e705ccbad17db0801a2bc 106 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 21.2 T 18-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 RU84_02020 f26acbe57a8e705ccbad17db0801a2bc 106 Gene3D G3DSA:3.30.70.330 1 97 1.0E-32 T 18-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily RU84_02020 f26acbe57a8e705ccbad17db0801a2bc 106 SUPERFAMILY SSF54189 2 91 3.24E-31 T 18-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16715 c50b73a0ee5a1dab527750e28ebd7d91 133 Pfam PF02033 Ribosome-binding factor A 6 114 1.9E-30 T 18-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RU84_16715 c50b73a0ee5a1dab527750e28ebd7d91 133 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 120 3.7E-25 T 18-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RU84_16715 c50b73a0ee5a1dab527750e28ebd7d91 133 SUPERFAMILY SSF89919 2 110 1.44E-31 T 18-10-2018 IPR023799 Ribosome-binding factor A domain superfamily RU84_16715 c50b73a0ee5a1dab527750e28ebd7d91 133 Gene3D G3DSA:3.30.300.20 3 111 2.2E-35 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_16715 c50b73a0ee5a1dab527750e28ebd7d91 133 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 104 6.0E-44 T 18-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RU84_16715 c50b73a0ee5a1dab527750e28ebd7d91 133 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 117 25.164 T 18-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 SUPERFAMILY SSF53850 92 299 7.12E-32 T 18-10-2018 RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 Gene3D G3DSA:1.10.10.10 3 88 2.0E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.9E-15 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 SUPERFAMILY SSF46785 5 115 3.01E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 Gene3D G3DSA:3.40.190.10 96 290 5.4E-52 T 18-10-2018 RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 Pfam PF03466 LysR substrate binding domain 91 294 7.8E-41 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_12790 418bf21ba330abf0ffb64fdaefd226ce 302 Gene3D G3DSA:3.40.190.10 165 268 5.4E-52 T 18-10-2018 RU84_16635 93c50a596c2ac56a237203d18b99b1be 472 Gene3D G3DSA:3.40.50.300 227 472 5.0E-93 T 18-10-2018 RU84_16635 93c50a596c2ac56a237203d18b99b1be 472 Gene3D G3DSA:3.40.50.300 3 225 2.2E-41 T 18-10-2018 RU84_16635 93c50a596c2ac56a237203d18b99b1be 472 SUPERFAMILY SSF52540 280 470 3.81E-27 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_16635 93c50a596c2ac56a237203d18b99b1be 472 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 14 224 9.8E-24 T 18-10-2018 IPR022488 Polyphosphate kinase-2-related RU84_16635 93c50a596c2ac56a237203d18b99b1be 472 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 254 470 9.8E-78 T 18-10-2018 IPR022488 Polyphosphate kinase-2-related RU84_14120 6c21296fde796d7b0bbb48bbdb3aa4b2 155 Pfam PF03592 Terminase small subunit 3 65 5.2E-9 T 18-10-2018 IPR005335 Terminase small subunit GO:0006323 RU84_14120 6c21296fde796d7b0bbb48bbdb3aa4b2 155 Gene3D G3DSA:1.10.10.1400 1 63 2.1E-10 T 18-10-2018 IPR038713 Terminase small subunit, N-terminal domain superfamily RU84_05790 10170e9de49dce61d300d7f71642449f 259 Gene3D G3DSA:3.40.50.80 100 255 5.1E-38 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_05790 10170e9de49dce61d300d7f71642449f 259 SUPERFAMILY SSF63380 7 99 5.02E-25 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_05790 10170e9de49dce61d300d7f71642449f 259 Pfam PF00175 Oxidoreductase NAD-binding domain 112 230 4.6E-8 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_05790 10170e9de49dce61d300d7f71642449f 259 Pfam PF00970 Oxidoreductase FAD-binding domain 15 99 4.2E-10 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_05790 10170e9de49dce61d300d7f71642449f 259 Gene3D G3DSA:2.40.30.10 1 96 9.1E-29 T 18-10-2018 RU84_05790 10170e9de49dce61d300d7f71642449f 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 216 224 7.4E-5 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_05790 10170e9de49dce61d300d7f71642449f 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 111 130 7.4E-5 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_05790 10170e9de49dce61d300d7f71642449f 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 51 58 7.4E-5 T 18-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 RU84_05790 10170e9de49dce61d300d7f71642449f 259 SUPERFAMILY SSF52343 102 257 2.88E-37 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_07165 138d64696320b6940371bc48b3eef80c 704 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 355 1.5E-132 T 18-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 RU84_07165 138d64696320b6940371bc48b3eef80c 704 Pfam PF13177 DNA polymerase III, delta subunit 19 177 1.5E-40 T 18-10-2018 RU84_07165 138d64696320b6940371bc48b3eef80c 704 SUPERFAMILY SSF48019 242 365 3.74E-26 T 18-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 RU84_07165 138d64696320b6940371bc48b3eef80c 704 SUPERFAMILY SSF52540 33 222 3.35E-56 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_07165 138d64696320b6940371bc48b3eef80c 704 Gene3D G3DSA:1.20.272.10 241 361 3.7E-31 T 18-10-2018 RU84_07165 138d64696320b6940371bc48b3eef80c 704 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 231 365 4.6E-27 T 18-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 RU84_07165 138d64696320b6940371bc48b3eef80c 704 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 40 58 2.1E-5 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_07165 138d64696320b6940371bc48b3eef80c 704 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 123 141 2.1E-5 T 18-10-2018 IPR001270 ClpA/B family GO:0005524 RU84_07165 138d64696320b6940371bc48b3eef80c 704 SMART SM00382 36 177 3.5E-8 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_07165 138d64696320b6940371bc48b3eef80c 704 Gene3D G3DSA:3.40.50.300 12 176 2.1E-103 T 18-10-2018 RU84_07165 138d64696320b6940371bc48b3eef80c 704 Gene3D G3DSA:1.10.8.60 7 239 2.1E-103 T 18-10-2018 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 SUPERFAMILY SSF56037 300 403 2.09E-15 T 18-10-2018 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 Gene3D G3DSA:3.40.50.620 1 198 6.3E-58 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 SUPERFAMILY SSF52402 1 197 1.2E-45 T 18-10-2018 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 337 378 2.1E-13 T 18-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 Pfam PF01171 PP-loop family 1 164 2.8E-43 T 18-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 Pfam PF11734 TilS substrate C-terminal domain 334 394 6.7E-8 T 18-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 SUPERFAMILY SSF82829 200 283 4.84E-20 T 18-10-2018 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 Gene3D G3DSA:1.20.59.20 199 282 1.7E-13 T 18-10-2018 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 Pfam PF09179 TilS substrate binding domain 212 279 8.7E-12 T 18-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 1 168 2.9E-44 T 18-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 SMART SM00977 333 408 1.7E-8 T 18-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RU84_15245 afd2fc84d7509774bfc0a3f63d6e0b18 427 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 1 271 17.378 T 18-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 RU84_14080 7bd9db943aae3aa5c7fabf271e85e967 153 Pfam PF04883 Bacteriophage HK97-gp10, putative tail-component 12 113 5.6E-11 T 18-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component RU84_14080 7bd9db943aae3aa5c7fabf271e85e967 153 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 8 144 6.2E-22 T 18-10-2018 IPR010064 Bacteriophage HK97-gp10, putative tail-component RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 Gene3D G3DSA:2.40.50.100 100 239 2.8E-60 T 18-10-2018 RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 SUPERFAMILY SSF111369 99 316 1.24E-19 T 18-10-2018 RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 83 310 5.7E-30 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 Gene3D G3DSA:2.40.420.20 74 380 2.8E-60 T 18-10-2018 RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 Gene3D G3DSA:2.40.30.170 86 318 2.8E-60 T 18-10-2018 RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 Gene3D G3DSA:1.10.287.470 134 203 2.8E-60 T 18-10-2018 RU84_01320 6981b1ae327970f1f7c901f4233abf2e 402 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 73 390 3.0E-39 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_17390 23b0bf599ce3455b141ca265f412f837 117 Gene3D G3DSA:3.30.1330.40 1 117 2.2E-39 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_17390 23b0bf599ce3455b141ca265f412f837 117 SUPERFAMILY SSF55298 10 117 1.73E-32 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_17390 23b0bf599ce3455b141ca265f412f837 117 Pfam PF01042 Endoribonuclease L-PSP 4 115 1.9E-27 T 18-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RU84_10120 feb3b7329a64157383bb0d8f6e8fea9d 99 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 2 95 7.1E-36 T 18-10-2018 IPR009662 Malonate decarboxylase delta subunit RU84_10120 feb3b7329a64157383bb0d8f6e8fea9d 99 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 99 50.867 T 18-10-2018 IPR009662 Malonate decarboxylase delta subunit RU84_10120 feb3b7329a64157383bb0d8f6e8fea9d 99 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 16 95 4.6E-25 T 18-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein RU84_10120 feb3b7329a64157383bb0d8f6e8fea9d 99 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 1 94 4.0E-35 T 18-10-2018 IPR009662 Malonate decarboxylase delta subunit RU84_13065 26eb71a3a5c34c6f674230b264db5d64 176 Pfam PF07152 YaeQ protein 1 170 3.0E-65 T 18-10-2018 IPR009822 YaeQ RU84_13065 26eb71a3a5c34c6f674230b264db5d64 176 Gene3D G3DSA:3.10.640.10 1 176 3.5E-67 T 18-10-2018 IPR038590 YaeQ superfamily RU84_13065 26eb71a3a5c34c6f674230b264db5d64 176 SMART SM01322 1 174 2.7E-99 T 18-10-2018 IPR009822 YaeQ RU84_13065 26eb71a3a5c34c6f674230b264db5d64 176 SUPERFAMILY SSF52980 2 175 3.22E-62 T 18-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RU84_13065 26eb71a3a5c34c6f674230b264db5d64 176 PIRSF PIRSF011484 1 176 4.8E-59 T 18-10-2018 IPR009822 YaeQ RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 Gene3D G3DSA:3.40.50.1000 3 212 4.8E-45 T 18-10-2018 IPR023214 HAD superfamily RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 Gene3D G3DSA:1.10.150.520 16 91 4.8E-45 T 18-10-2018 RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 189 7.1E-37 T 18-10-2018 RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 92 185 2.1E-18 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 SUPERFAMILY SSF56784 1 216 2.44E-40 T 18-10-2018 IPR036412 HAD-like superfamily RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 95 189 2.9E-13 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_10955 ca851801d13ba884b9949a0a7d38d7a8 225 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 90 192 4.9E-16 T 18-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 RU84_03130 f472620e2a7458b9a4b312044fa57333 192 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 126 136 - T 18-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 RU84_03130 f472620e2a7458b9a4b312044fa57333 192 Pfam PF00782 Dual specificity phosphatase, catalytic domain 54 160 6.7E-12 T 18-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 RU84_03130 f472620e2a7458b9a4b312044fa57333 192 SUPERFAMILY SSF52799 38 164 5.31E-26 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_03130 f472620e2a7458b9a4b312044fa57333 192 Gene3D G3DSA:3.90.190.10 28 191 5.5E-36 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_02370 7507a40a9fc1ba62d2b1ad65186a184e 131 SUPERFAMILY SSF54913 9 68 4.22E-5 T 18-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta RU84_02370 7507a40a9fc1ba62d2b1ad65186a184e 131 Pfam PF09413 Putative prokaryotic signal transducing protein 7 64 1.8E-6 T 18-10-2018 IPR018551 Domain of unknown function DUF2007 RU84_09545 d964219031be6bf017198e14f6bf471c 232 Gene3D G3DSA:3.40.50.1220 5 202 9.6E-65 T 18-10-2018 RU84_09545 d964219031be6bf017198e14f6bf471c 232 Gene3D G3DSA:3.30.1600.10 18 154 9.6E-65 T 18-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily RU84_09545 d964219031be6bf017198e14f6bf471c 232 Pfam PF02146 Sir2 family 9 182 1.0E-47 T 18-10-2018 IPR003000 Sirtuin family GO:0070403 RU84_09545 d964219031be6bf017198e14f6bf471c 232 SUPERFAMILY SSF52467 3 230 3.97E-66 T 18-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RU84_02950 f3167e3452f82145480f71f7e9a63828 347 Pfam PF06258 Mitochondrial fission ELM1 16 322 2.5E-25 T 18-10-2018 IPR009367 Mitochondrial fission protein ELM1-like RU84_01495 353d26564512408411ccea0f7d393a1f 360 Pfam PF04536 TPM domain 100 223 2.3E-38 T 18-10-2018 IPR007621 TPM domain RU84_01495 353d26564512408411ccea0f7d393a1f 360 Gene3D G3DSA:3.10.310.50 89 229 4.0E-47 T 18-10-2018 RU84_06870 01130ec36897be3a6a2d5f6cc3d2aaf3 271 Gene3D G3DSA:3.40.50.11240 69 252 5.3E-60 T 18-10-2018 RU84_06870 01130ec36897be3a6a2d5f6cc3d2aaf3 271 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 15 253 1.4E-87 T 18-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 RU84_06870 01130ec36897be3a6a2d5f6cc3d2aaf3 271 PIRSF PIRSF018982 1 264 1.3E-90 T 18-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 RU84_06870 01130ec36897be3a6a2d5f6cc3d2aaf3 271 Gene3D G3DSA:1.10.30.40 1 61 4.8E-13 T 18-10-2018 RU84_16920 fa02de54cc0bb1fc08eb4b114693a23c 117 Pfam PF07007 Lysozyme inhibitor LprI 28 102 3.3E-4 T 18-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal RU84_11100 fa0b499243d44f0e14272496b6c77d9c 179 PIRSF PIRSF006118 1 175 7.9E-60 T 18-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_11100 fa0b499243d44f0e14272496b6c77d9c 179 SUPERFAMILY SSF56784 10 171 2.17E-40 T 18-10-2018 IPR036412 HAD-like superfamily RU84_11100 fa0b499243d44f0e14272496b6c77d9c 179 Pfam PF08282 haloacid dehalogenase-like hydrolase 88 145 1.8E-9 T 18-10-2018 RU84_11100 fa0b499243d44f0e14272496b6c77d9c 179 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 14 164 4.2E-47 T 18-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 RU84_11100 fa0b499243d44f0e14272496b6c77d9c 179 Gene3D G3DSA:3.40.50.1000 2 176 8.3E-52 T 18-10-2018 IPR023214 HAD superfamily RU84_11100 fa0b499243d44f0e14272496b6c77d9c 179 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 15 127 1.6E-13 T 18-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 RU84_14785 5d055870490ce58069bb816bedd13784 183 Gene3D G3DSA:1.20.58.1610 2 121 6.9E-31 T 18-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14785 5d055870490ce58069bb816bedd13784 183 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 120 3.0E-25 T 18-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14785 5d055870490ce58069bb816bedd13784 183 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 17.894 T 18-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 RU84_07135 0b1b92cb805d54a8697b64910a756e1c 284 SUPERFAMILY SSF54637 33 154 9.7E-7 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_07135 0b1b92cb805d54a8697b64910a756e1c 284 Gene3D G3DSA:3.10.129.10 34 284 6.3E-65 T 18-10-2018 RU84_07135 0b1b92cb805d54a8697b64910a756e1c 284 SUPERFAMILY SSF54637 171 282 1.49E-16 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_07135 0b1b92cb805d54a8697b64910a756e1c 284 Pfam PF01575 MaoC like domain 178 231 1.2E-11 T 18-10-2018 IPR002539 MaoC-like dehydratase domain RU84_07135 0b1b92cb805d54a8697b64910a756e1c 284 PRINTS PR01483 Fatty acid synthase signature 206 227 7.8E-5 T 18-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RU84_07135 0b1b92cb805d54a8697b64910a756e1c 284 PRINTS PR01483 Fatty acid synthase signature 184 206 7.8E-5 T 18-10-2018 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 RU84_09980 6b828fbacef400b058def76d3a0b4b86 142 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 117 1.5E-39 T 18-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 RU84_09980 6b828fbacef400b058def76d3a0b4b86 142 Pfam PF03960 ArsC family 8 115 7.0E-16 T 18-10-2018 IPR006660 Arsenate reductase-like RU84_09980 6b828fbacef400b058def76d3a0b4b86 142 Gene3D G3DSA:3.40.30.10 2 142 7.1E-57 T 18-10-2018 RU84_09980 6b828fbacef400b058def76d3a0b4b86 142 SUPERFAMILY SSF52833 5 138 6.51E-38 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_08530 a1636b1b445c37542e1452d242767130 103 Gene3D G3DSA:1.10.260.40 25 99 5.0E-9 T 18-10-2018 RU84_08530 a1636b1b445c37542e1452d242767130 103 Pfam PF01381 Helix-turn-helix 37 84 1.0E-8 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_08530 a1636b1b445c37542e1452d242767130 103 SUPERFAMILY SSF47413 27 87 4.29E-9 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_08530 a1636b1b445c37542e1452d242767130 103 SMART SM00530 32 88 8.0E-4 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_15420 310c6e1ed6f6d0805363b3805266ad07 262 Gene3D G3DSA:3.90.226.10 2 249 8.6E-66 T 18-10-2018 RU84_15420 310c6e1ed6f6d0805363b3805266ad07 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 220 1.3E-41 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_15420 310c6e1ed6f6d0805363b3805266ad07 262 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 104 124 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_15420 310c6e1ed6f6d0805363b3805266ad07 262 SUPERFAMILY SSF52096 3 243 2.33E-65 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 266 274 - T 18-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 Gene3D G3DSA:2.40.30.10 1 100 1.2E-23 T 18-10-2018 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 Pfam PF00970 Oxidoreductase FAD-binding domain 8 98 1.1E-5 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 Gene3D G3DSA:3.40.50.80 104 221 1.1E-21 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 75 89 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 110 129 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 39 51 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 189 197 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 29 39 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 135 144 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 PRINTS PR00409 Phthalate dioxygenase reductase family signature 51 65 7.9E-35 T 18-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 240 307 3.2E-13 T 18-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 SUPERFAMILY SSF52343 97 224 1.57E-24 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 SUPERFAMILY SSF63380 3 99 4.92E-22 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 SUPERFAMILY SSF54292 211 315 6.82E-28 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 Pfam PF00175 Oxidoreductase NAD-binding domain 111 201 1.8E-4 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_08075 5a96075124e29f30ac76cb98bd8ebdd8 317 Gene3D G3DSA:3.10.20.30 222 317 6.7E-25 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_01415 8b84a17075109facda77b11329438c17 372 Pfam PF00953 Glycosyl transferase family 4 99 296 5.9E-33 T 18-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 RU84_01415 8b84a17075109facda77b11329438c17 372 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 372 1.6E-124 T 18-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_01415 8b84a17075109facda77b11329438c17 372 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 18-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_01415 8b84a17075109facda77b11329438c17 372 ProSitePatterns PS01348 MraY family signature 2. 201 212 - T 18-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_01415 8b84a17075109facda77b11329438c17 372 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 370 23.387 T 18-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_17120 a35792735272cc19bbf2fccbd34f5d7b 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 9.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17120 a35792735272cc19bbf2fccbd34f5d7b 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 9.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17120 a35792735272cc19bbf2fccbd34f5d7b 193 SUPERFAMILY SSF48498 78 186 1.21E-7 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_17120 a35792735272cc19bbf2fccbd34f5d7b 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 55 5.0E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17120 a35792735272cc19bbf2fccbd34f5d7b 193 Gene3D G3DSA:1.10.357.10 2 192 1.1E-47 T 18-10-2018 RU84_17120 a35792735272cc19bbf2fccbd34f5d7b 193 SUPERFAMILY SSF46689 4 75 6.67E-15 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_02260 c9a56f0eef77606345350a9e1eddbb5b 197 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 5 195 1.8E-45 T 18-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 RU84_02260 c9a56f0eef77606345350a9e1eddbb5b 197 SUPERFAMILY SSF52218 4 195 2.67E-58 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_02260 c9a56f0eef77606345350a9e1eddbb5b 197 Gene3D G3DSA:3.40.50.360 1 196 3.8E-62 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_02260 c9a56f0eef77606345350a9e1eddbb5b 197 ProSitePatterns PS00201 Flavodoxin signature. 7 23 - T 18-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RU84_02260 c9a56f0eef77606345350a9e1eddbb5b 197 Pfam PF03358 NADPH-dependent FMN reductase 12 125 5.8E-9 T 18-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 SUPERFAMILY SSF81464 14 115 3.43E-22 T 18-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 Gene3D G3DSA:1.10.287.90 26 110 2.0E-30 T 18-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 SUPERFAMILY SSF49503 117 254 5.27E-44 T 18-10-2018 IPR008972 Cupredoxin RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 144 222 1.0E-5 T 18-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 Pfam PF06481 COX Aromatic Rich Motif 297 323 5.7E-9 T 18-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 Gene3D G3DSA:2.60.40.420 111 279 1.2E-47 T 18-10-2018 IPR008972 Cupredoxin RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 12 236 1.4E-100 T 18-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RU84_06570 a97cd7f4499ae02b341fc91c97f39500 350 PIRSF PIRSF000292 1 349 1.3E-127 T 18-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 RU84_10510 fa469266477be1903e3b8de7c7b5dad6 269 Gene3D G3DSA:3.90.226.10 2 209 3.1E-60 T 18-10-2018 RU84_10510 fa469266477be1903e3b8de7c7b5dad6 269 Pfam PF00378 Enoyl-CoA hydratase/isomerase 22 266 3.5E-56 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_10510 fa469266477be1903e3b8de7c7b5dad6 269 Gene3D G3DSA:1.10.12.10 210 266 2.9E-24 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_10510 fa469266477be1903e3b8de7c7b5dad6 269 SUPERFAMILY SSF52096 13 266 3.78E-74 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 SUPERFAMILY SSF53720 4 457 2.62E-122 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 Pfam PF00171 Aldehyde dehydrogenase family 11 461 3.5E-120 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 Gene3D G3DSA:3.40.605.10 11 451 7.7E-142 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 Gene3D G3DSA:3.40.309.10 249 439 7.7E-142 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 272 283 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 5 487 3.5E-257 T 18-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 244 251 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_01745 333cc3b3fd844325a706ed6b919f534b 489 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 3 488 58.151 T 18-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 RU84_02170 4bd12ba7aea8918a5adcd62773892d92 188 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 29 177 3.0E-46 T 18-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria RU84_02170 4bd12ba7aea8918a5adcd62773892d92 188 Gene3D G3DSA:1.20.1540.10 6 181 1.0E-15 T 18-10-2018 IPR035952 Rhomboid-like superfamily RU84_02170 4bd12ba7aea8918a5adcd62773892d92 188 Pfam PF01694 Rhomboid family 39 181 3.3E-13 T 18-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RU84_02170 4bd12ba7aea8918a5adcd62773892d92 188 SUPERFAMILY SSF144091 11 186 1.31E-23 T 18-10-2018 RU84_14000 5b95bab24188507fef5938d89ca65a19 184 SUPERFAMILY SSF53955 37 183 1.48E-52 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_14000 5b95bab24188507fef5938d89ca65a19 184 Gene3D G3DSA:1.10.530.40 20 184 6.0E-58 T 18-10-2018 RU84_14000 5b95bab24188507fef5938d89ca65a19 184 Pfam PF00959 Phage lysozyme 65 175 6.8E-25 T 18-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 RU84_03995 e1dcfffb6869d1d24ac2b4bd7ef976b2 575 SMART SM00854 239 494 2.1E-53 T 18-10-2018 IPR019079 Capsule synthesis protein, CapA RU84_03995 e1dcfffb6869d1d24ac2b4bd7ef976b2 575 SUPERFAMILY SSF56300 263 494 1.14E-25 T 18-10-2018 RU84_03995 e1dcfffb6869d1d24ac2b4bd7ef976b2 575 Gene3D G3DSA:3.40.710.10 33 128 1.2E-7 T 18-10-2018 RU84_03995 e1dcfffb6869d1d24ac2b4bd7ef976b2 575 Pfam PF09587 Bacterial capsule synthesis protein PGA_cap 242 493 2.3E-42 T 18-10-2018 IPR019079 Capsule synthesis protein, CapA RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 444 261.075 T 18-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 18-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 SUPERFAMILY SSF53686 77 438 1.1E-56 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 Gene3D G3DSA:3.40.50.1100 116 238 8.2E-196 T 18-10-2018 RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 394 8.8E-59 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 12 438 4.5E-220 T 18-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 RU84_12880 6b8afe6a3f233226928c0c22636fa32a 444 Gene3D G3DSA:3.40.50.1100 24 438 8.2E-196 T 18-10-2018 RU84_03570 a55fb95f5d1492c00e042b9765afbba5 285 Pfam PF04085 rod shape-determining protein MreC 125 271 2.6E-37 T 18-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RU84_03570 a55fb95f5d1492c00e042b9765afbba5 285 PIRSF PIRSF038471 3 285 3.2E-64 T 18-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RU84_03570 a55fb95f5d1492c00e042b9765afbba5 285 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 6 276 1.7E-48 T 18-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 RU84_03570 a55fb95f5d1492c00e042b9765afbba5 285 Gene3D G3DSA:2.40.10.340 123 270 3.2E-36 T 18-10-2018 RU84_03570 a55fb95f5d1492c00e042b9765afbba5 285 Gene3D G3DSA:2.40.10.350 182 259 3.2E-36 T 18-10-2018 RU84_06220 1a8440be75a8f5a225081717ec3916ab 178 Pfam PF05229 Spore Coat Protein U domain 26 175 3.0E-23 T 18-10-2018 IPR007893 Spore coat protein U RU84_06220 1a8440be75a8f5a225081717ec3916ab 178 SMART SM00972 117 175 6.6E-14 T 18-10-2018 IPR007893 Spore coat protein U RU84_17140 578415c3a237373153059f7bc43bce4d 270 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 13 256 37.539 T 18-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 RU84_17140 578415c3a237373153059f7bc43bce4d 270 Pfam PF00149 Calcineurin-like phosphoesterase 14 202 9.0E-13 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_17140 578415c3a237373153059f7bc43bce4d 270 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 256 1.0E-9 T 18-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 RU84_17140 578415c3a237373153059f7bc43bce4d 270 Gene3D G3DSA:3.60.21.10 2 267 2.1E-63 T 18-10-2018 IPR029052 Metallo-dependent phosphatase-like RU84_17140 578415c3a237373153059f7bc43bce4d 270 SUPERFAMILY SSF56300 15 265 3.97E-55 T 18-10-2018 RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 79 1.0E-11 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 Gene3D G3DSA:1.10.10.10 3 80 8.3E-16 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 SMART SM00345 21 79 8.6E-11 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 SMART SM00895 89 212 9.8E-19 T 18-10-2018 IPR011711 GntR, C-terminal RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 SUPERFAMILY SSF48008 86 217 1.65E-26 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 SUPERFAMILY SSF46785 17 83 4.28E-13 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 Gene3D G3DSA:1.20.120.530 83 224 2.0E-28 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_10005 d61b96777ce3bea451d43bab750cccd4 245 Pfam PF07729 FCD domain 89 211 3.1E-22 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11565 6cbf9320434a841af482774546ff046a 320 Pfam PF10118 Predicted metal-dependent hydrolase 33 285 1.2E-62 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_11565 6cbf9320434a841af482774546ff046a 320 PIRSF PIRSF007580 20 303 2.3E-49 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_11385 b386242db91d632fd19b76669af8afd6 203 SUPERFAMILY SSF52833 1 84 1.45E-17 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_11385 b386242db91d632fd19b76669af8afd6 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 111 189 4.0E-8 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_11385 b386242db91d632fd19b76669af8afd6 203 SUPERFAMILY SSF47616 81 199 1.09E-21 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_11385 b386242db91d632fd19b76669af8afd6 203 Gene3D G3DSA:1.20.1050.10 83 189 1.9E-59 T 18-10-2018 RU84_11385 b386242db91d632fd19b76669af8afd6 203 Gene3D G3DSA:3.40.30.10 3 195 1.9E-59 T 18-10-2018 RU84_11385 b386242db91d632fd19b76669af8afd6 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 2.0E-9 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.2E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 Pfam PF03466 LysR substrate binding domain 89 292 1.0E-40 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 Gene3D G3DSA:3.40.190.10 164 263 1.3E-59 T 18-10-2018 RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 Gene3D G3DSA:1.10.10.10 4 91 2.3E-25 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 Gene3D G3DSA:3.40.190.10 93 290 1.3E-59 T 18-10-2018 RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 SUPERFAMILY SSF46785 5 89 1.4E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00215 cf74f6634d3afc382a5e3f91ef7c672f 300 SUPERFAMILY SSF53850 90 294 2.64E-40 T 18-10-2018 RU84_13980 6ca06cba4083e2102846938565c4318b 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 60 1.8E-17 T 18-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RU84_13980 6ca06cba4083e2102846938565c4318b 163 Gene3D G3DSA:3.40.50.620 1 163 1.5E-59 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_13980 6ca06cba4083e2102846938565c4318b 163 SUPERFAMILY SSF52374 3 158 3.49E-45 T 18-10-2018 RU84_13980 6ca06cba4083e2102846938565c4318b 163 Pfam PF01467 Cytidylyltransferase-like 7 135 4.6E-21 T 18-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 RU84_13980 6ca06cba4083e2102846938565c4318b 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 35.651 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_13980 6ca06cba4083e2102846938565c4318b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 5.4E-48 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_13980 6ca06cba4083e2102846938565c4318b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 5.4E-48 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_13980 6ca06cba4083e2102846938565c4318b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 5.4E-48 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_13980 6ca06cba4083e2102846938565c4318b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 5.4E-48 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_13980 6ca06cba4083e2102846938565c4318b 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 5.4E-48 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_13980 6ca06cba4083e2102846938565c4318b 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 6 158 1.5E-58 T 18-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 451 2.0E-114 T 18-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 SUPERFAMILY SSF50156 205 288 1.08E-15 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 Pfam PF02163 Peptidase family M50 10 436 2.7E-78 T 18-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 SMART SM00228 116 187 5.3E-5 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 SMART SM00228 209 278 2.3E-7 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 SUPERFAMILY SSF50156 89 195 1.58E-15 T 18-10-2018 IPR036034 PDZ superfamily GO:0005515 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 Gene3D G3DSA:2.30.42.10 219 309 1.7E-15 T 18-10-2018 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 Gene3D G3DSA:2.30.42.10 127 218 2.2E-21 T 18-10-2018 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 Pfam PF13180 PDZ domain 128 192 4.8E-8 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_07475 d1aefb3a38b08ab2d5995f1bd6134b9a 451 Pfam PF13180 PDZ domain 222 285 1.4E-6 T 18-10-2018 IPR001478 PDZ domain GO:0005515 RU84_17600 71a96e16ba28cd7aa77482b442cc0cbd 269 SUPERFAMILY SSF81345 4 256 6.8E-33 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_17600 71a96e16ba28cd7aa77482b442cc0cbd 269 Gene3D G3DSA:1.10.3470.10 34 268 1.1E-7 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_17600 71a96e16ba28cd7aa77482b442cc0cbd 269 Pfam PF00950 ABC 3 transport family 6 259 1.3E-53 T 18-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 RU84_03925 68e3b34192c08cafe5e519cf4e562013 121 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 9 119 2.5E-34 T 18-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 RU84_03925 68e3b34192c08cafe5e519cf4e562013 121 PIRSF PIRSF000169 1 121 1.8E-40 T 18-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 RU84_03925 68e3b34192c08cafe5e519cf4e562013 121 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 12 109 6.5E-7 T 18-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03925 68e3b34192c08cafe5e519cf4e562013 121 Gene3D G3DSA:1.20.1300.10 1 120 3.8E-30 T 18-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_03925 68e3b34192c08cafe5e519cf4e562013 121 SUPERFAMILY SSF81343 4 119 2.62E-26 T 18-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_04600 aca45182f64927cc45ab52f0e9b3ccc4 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 381 5.0E-69 T 18-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 RU84_04600 aca45182f64927cc45ab52f0e9b3ccc4 401 Pfam PF07690 Major Facilitator Superfamily 16 358 2.0E-35 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_04600 aca45182f64927cc45ab52f0e9b3ccc4 401 Gene3D G3DSA:1.20.1720.10 10 392 1.1E-91 T 18-10-2018 RU84_04600 aca45182f64927cc45ab52f0e9b3ccc4 401 SUPERFAMILY SSF103473 8 390 1.1E-58 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_04600 aca45182f64927cc45ab52f0e9b3ccc4 401 ProSitePatterns PS00216 Sugar transport proteins signature 1. 65 81 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 Gene3D G3DSA:1.10.3130.10 1 66 5.3E-24 T 18-10-2018 RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 SUPERFAMILY SSF51161 4 169 1.15E-57 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 1.2E-75 T 18-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 152 1.7E-6 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 3.8E-5 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 Pfam PF06426 Serine acetyltransferase, N-terminal 3 35 1.5E-4 T 18-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 RU84_09935 bad720915394b9e728fcb3f0b34c5551 271 Gene3D G3DSA:2.160.10.10 67 190 4.1E-38 T 18-10-2018 RU84_07460 b80b951fec4ff507758b09409aca6e75 250 SUPERFAMILY SSF64005 8 232 2.49E-82 T 18-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RU84_07460 b80b951fec4ff507758b09409aca6e75 250 Pfam PF01255 Putative undecaprenyl diphosphate synthase 16 236 1.5E-76 T 18-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RU84_07460 b80b951fec4ff507758b09409aca6e75 250 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 9 236 1.6E-83 T 18-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RU84_07460 b80b951fec4ff507758b09409aca6e75 250 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 9 237 37.084 T 18-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 RU84_07460 b80b951fec4ff507758b09409aca6e75 250 Gene3D G3DSA:3.40.1180.10 2 237 6.2E-91 T 18-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 RU84_07460 b80b951fec4ff507758b09409aca6e75 250 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 182 199 - T 18-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 RU84_16825 bae545a3763cc399aa6ea2b7ca391371 699 Pfam PF04632 Fusaric acid resistance protein family 15 678 1.2E-146 T 18-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 RU84_08480 97af7f45c8fd95cc35a45e1b622b9aa3 464 Pfam PF02219 Methylenetetrahydrofolate reductase 64 267 2.0E-21 T 18-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 RU84_08480 97af7f45c8fd95cc35a45e1b622b9aa3 464 Pfam PF12225 Methylene-tetrahydrofolate reductase C terminal 361 442 1.9E-18 T 18-10-2018 IPR022026 Methylene-tetrahydrofolate reductase C-terminal RU84_08480 97af7f45c8fd95cc35a45e1b622b9aa3 464 SUPERFAMILY SSF51730 1 278 1.39E-43 T 18-10-2018 IPR029041 FAD-linked oxidoreductase-like RU84_08480 97af7f45c8fd95cc35a45e1b622b9aa3 464 Gene3D G3DSA:3.20.20.220 29 277 1.9E-28 T 18-10-2018 RU84_03980 b8356f7354016491b0aceabb84ef7393 500 Gene3D G3DSA:1.20.1530.20 2 418 1.9E-7 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_03980 b8356f7354016491b0aceabb84ef7393 500 Pfam PF00999 Sodium/hydrogen exchanger family 16 409 1.4E-35 T 18-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RU84_13735 da6a16bc85fad3d0092cc24f6c78e9b0 145 Gene3D G3DSA:1.10.10.10 2 84 1.1E-35 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_13735 da6a16bc85fad3d0092cc24f6c78e9b0 145 Gene3D G3DSA:3.30.1490.190 85 141 7.9E-24 T 18-10-2018 RU84_13735 da6a16bc85fad3d0092cc24f6c78e9b0 145 SUPERFAMILY SSF46785 6 134 1.7E-44 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_13735 da6a16bc85fad3d0092cc24f6c78e9b0 145 Pfam PF01475 Ferric uptake regulator family 10 130 1.9E-45 T 18-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 Gene3D G3DSA:1.10.275.10 4 137 6.4E-59 T 18-10-2018 IPR024083 Fumarase/histidase, N-terminal RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 6.7E-35 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 6.7E-35 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 6.7E-35 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 6.7E-35 T 18-10-2018 IPR000362 Fumarate lyase family RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 Pfam PF00206 Lyase 11 341 1.0E-114 T 18-10-2018 IPR022761 Fumarate lyase, N-terminal RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 Gene3D G3DSA:1.20.200.10 138 405 2.1E-118 T 18-10-2018 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 91.329 T 18-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 460 1.0E-230 T 18-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 SUPERFAMILY SSF48557 3 461 1.52E-160 T 18-10-2018 IPR008948 L-Aspartase-like GO:0003824 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 18-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 Pfam PF10415 Fumarase C C-terminus 407 459 9.4E-26 T 18-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 332 8.6E-5 T 18-10-2018 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 PRINTS PR00145 Argininosuccinate lyase family signature 174 194 8.6E-5 T 18-10-2018 RU84_07385 608199c9a1d3a52b16e0f8e09b137426 464 Gene3D G3DSA:1.10.40.30 406 464 9.7E-28 T 18-10-2018 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 Gene3D G3DSA:3.40.50.720 1 138 1.2E-59 T 18-10-2018 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 18-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 SMART SM00859 2 122 1.3E-27 T 18-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 367 9.4E-196 T 18-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 SUPERFAMILY SSF55347 134 354 3.57E-76 T 18-10-2018 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 PIRSF PIRSF000148 1 371 3.0E-66 T 18-10-2018 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 SUPERFAMILY SSF51735 1 147 1.15E-53 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 33.236 T 18-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 353 5.4E-56 T 18-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 Gene3D G3DSA:3.30.360.10 139 350 2.4E-80 T 18-10-2018 RU84_16220 b7c9b54540b76ed169dec20351a6ea89 372 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 121 1.7E-23 T 18-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RU84_00705 30940721dcb70ddb817605c6209f3c92 216 Gene3D G3DSA:3.40.50.2020 6 216 7.8E-77 T 18-10-2018 RU84_00705 30940721dcb70ddb817605c6209f3c92 216 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 14 191 5.4E-58 T 18-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_00705 30940721dcb70ddb817605c6209f3c92 216 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 216 33.431 T 18-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 RU84_00705 30940721dcb70ddb817605c6209f3c92 216 Pfam PF00156 Phosphoribosyl transferase domain 47 163 1.3E-15 T 18-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RU84_00705 30940721dcb70ddb817605c6209f3c92 216 SUPERFAMILY SSF53271 10 199 6.29E-49 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.6E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 1.6E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.6E-6 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 SUPERFAMILY SSF51735 6 261 1.49E-66 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.8E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.8E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.8E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.8E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.8E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 1.8E-30 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 Gene3D G3DSA:3.40.50.720 1 263 2.3E-67 T 18-10-2018 RU84_12975 dae8765cee031e9f9a9c6393cbb6cb9e 264 Pfam PF00106 short chain dehydrogenase 8 201 3.9E-47 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 8 573 6.0E-208 T 18-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 Gene3D G3DSA:1.20.1560.10 1 324 6.4E-76 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 SMART SM00382 360 547 1.4E-17 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 SUPERFAMILY SSF90123 10 321 1.44E-70 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 Pfam PF00005 ABC transporter 352 501 3.1E-34 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 SUPERFAMILY SSF52540 327 570 6.01E-95 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 Pfam PF00664 ABC transporter transmembrane region 24 291 8.8E-48 T 18-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 RU84_09420 2bf3d4aba5b18d14528270e70af5566c 575 Gene3D G3DSA:3.40.50.300 326 574 1.9E-94 T 18-10-2018 RU84_13405 e5b0ec79959406eac4b4221168bee1a2 66 Gene3D G3DSA:1.20.120.910 3 66 3.6E-13 T 18-10-2018 RU84_13405 e5b0ec79959406eac4b4221168bee1a2 66 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 32 63 2.1E-10 T 18-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 RU84_15710 b7f5cdd13017c3020b6b92e2a3ed99f1 280 Gene3D G3DSA:3.30.565.40 52 163 1.4E-8 T 18-10-2018 RU84_02330 d1e4c442e3a345560d1b34b4d7d2e92f 285 Gene3D G3DSA:3.40.50.150 1 285 3.0E-100 T 18-10-2018 RU84_02330 d1e4c442e3a345560d1b34b4d7d2e92f 285 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 270 39.699 T 18-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RU84_02330 d1e4c442e3a345560d1b34b4d7d2e92f 285 SUPERFAMILY SSF53335 8 276 1.34E-83 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_02330 d1e4c442e3a345560d1b34b4d7d2e92f 285 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 283 7.0E-72 T 18-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 RU84_10115 5ffae81c2b2e6e0a78f0e6b69b27dbbd 283 Pfam PF01039 Carboxyl transferase domain 17 275 1.8E-17 T 18-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RU84_10115 5ffae81c2b2e6e0a78f0e6b69b27dbbd 283 Gene3D G3DSA:3.90.226.10 4 241 1.4E-52 T 18-10-2018 RU84_10115 5ffae81c2b2e6e0a78f0e6b69b27dbbd 283 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 12 282 1.0E-120 T 18-10-2018 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 RU84_10115 5ffae81c2b2e6e0a78f0e6b69b27dbbd 283 SUPERFAMILY SSF52096 9 235 1.96E-38 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_06170 380faaa3d8385ebe18286cdee4d01a21 156 SMART SM01034 3 96 5.5E-34 T 18-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 RU84_06170 380faaa3d8385ebe18286cdee4d01a21 156 Gene3D G3DSA:3.30.70.100 2 128 9.9E-33 T 18-10-2018 RU84_06170 380faaa3d8385ebe18286cdee4d01a21 156 Pfam PF04940 Sensors of blue-light using FAD 4 95 3.5E-27 T 18-10-2018 IPR007024 BLUF domain GO:0009882|GO:0071949 RU84_06170 380faaa3d8385ebe18286cdee4d01a21 156 SUPERFAMILY SSF54975 1 132 8.83E-37 T 18-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 RU84_03705 528aeeabc8e184f2cc1ffee9c0f8e3a1 434 SUPERFAMILY SSF56935 94 434 4.45E-26 T 18-10-2018 RU84_03705 528aeeabc8e184f2cc1ffee9c0f8e3a1 434 Pfam PF02530 Porin subfamily 125 341 2.3E-5 T 18-10-2018 IPR003684 Porin, alpha proteobacteria type GO:0015288|GO:0016020|GO:0055085 RU84_15000 07cffdbe524e747b71dab1492e2f2f1b 106 SUPERFAMILY SSF103481 6 104 8.63E-21 T 18-10-2018 RU84_15000 07cffdbe524e747b71dab1492e2f2f1b 106 Gene3D G3DSA:1.10.3730.20 1 106 3.5E-32 T 18-10-2018 RU84_15000 07cffdbe524e747b71dab1492e2f2f1b 106 Pfam PF00893 Small Multidrug Resistance protein 1 93 7.9E-29 T 18-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RU84_17185 563201bf99b9c8f1c94c341648440e21 271 Pfam PF10411 Disulfide bond isomerase protein N-terminus 62 115 3.9E-14 T 18-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal RU84_17185 563201bf99b9c8f1c94c341648440e21 271 Gene3D G3DSA:3.10.450.70 57 119 9.3E-8 T 18-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RU84_17185 563201bf99b9c8f1c94c341648440e21 271 Gene3D G3DSA:3.40.30.10 120 271 7.6E-40 T 18-10-2018 RU84_17185 563201bf99b9c8f1c94c341648440e21 271 SUPERFAMILY SSF54423 66 117 9.16E-10 T 18-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 RU84_17185 563201bf99b9c8f1c94c341648440e21 271 SUPERFAMILY SSF52833 130 271 2.44E-32 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_17185 563201bf99b9c8f1c94c341648440e21 271 Pfam PF13098 Thioredoxin-like domain 150 269 1.1E-25 T 18-10-2018 IPR012336 Thioredoxin-like fold RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 Pfam PF02501 Type II secretion system (T2SS), protein I 42 103 1.7E-9 T 18-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 3.1E-9 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 4 24 - T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 SUPERFAMILY SSF54523 42 108 1.52E-13 T 18-10-2018 RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 TIGRFAM TIGR01707 gspI: type II secretion system protein I 5 100 1.6E-14 T 18-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 Gene3D G3DSA:3.30.1300.30 33 120 5.5E-10 T 18-10-2018 RU84_09380 2a3c3c1aa17a4791ae7beb9bc014c679 126 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 25 1.4E-8 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_03105 97a32d336b402ee13be25fb61d03ea46 349 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 47 207 7.2E-23 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_03105 97a32d336b402ee13be25fb61d03ea46 349 Gene3D G3DSA:1.10.10.60 232 347 2.2E-17 T 18-10-2018 RU84_03105 97a32d336b402ee13be25fb61d03ea46 349 Pfam PF12833 Helix-turn-helix domain 263 332 1.8E-13 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03105 97a32d336b402ee13be25fb61d03ea46 349 SUPERFAMILY SSF46689 294 340 9.41E-6 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03105 97a32d336b402ee13be25fb61d03ea46 349 SMART SM00342 256 337 1.0E-14 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_02185 b6c68178caef8727c1af08d4da5aaa96 69 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 2 47 3.3E-17 T 18-10-2018 IPR012658 Conserved hypothetical protein CHP02443 RU84_02185 b6c68178caef8727c1af08d4da5aaa96 69 Pfam PF09526 Probable metal-binding protein (DUF2387) 1 45 1.2E-17 T 18-10-2018 IPR012658 Conserved hypothetical protein CHP02443 RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 Gene3D G3DSA:3.40.50.1100 58 160 2.6E-122 T 18-10-2018 RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 TIGRFAM TIGR01139 cysK: cysteine synthase A 22 326 7.5E-132 T 18-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 46 64 - T 18-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 TIGRFAM TIGR01136 cysKM: cysteine synthase 22 326 9.2E-127 T 18-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 Gene3D G3DSA:3.40.50.1100 25 321 2.6E-122 T 18-10-2018 RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 315 1.1E-64 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_17430 f8a39d41ccf79c2eb94e337252ba4b36 332 SUPERFAMILY SSF53686 18 325 3.93E-97 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_10330 49d9ef14053a0d007f1a4e59ac26c6ae 159 Pfam PF02464 Competence-damaged protein 4 122 6.0E-21 T 18-10-2018 IPR008136 CinA, C-terminal RU84_10330 49d9ef14053a0d007f1a4e59ac26c6ae 159 SUPERFAMILY SSF142433 3 131 3.66E-28 T 18-10-2018 IPR036653 CinA-like, C-terminal RU84_10330 49d9ef14053a0d007f1a4e59ac26c6ae 159 Gene3D G3DSA:3.90.950.20 1 135 3.5E-25 T 18-10-2018 IPR036653 CinA-like, C-terminal RU84_04760 9519ee6cb2dc407bf9fd15313443b567 237 Pfam PF02565 Recombination protein O C terminal 77 227 6.6E-21 T 18-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RU84_04760 9519ee6cb2dc407bf9fd15313443b567 237 SUPERFAMILY SSF50249 1 69 5.14E-6 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_04760 9519ee6cb2dc407bf9fd15313443b567 237 Gene3D G3DSA:1.20.1440.120 74 237 7.7E-43 T 18-10-2018 RU84_04760 9519ee6cb2dc407bf9fd15313443b567 237 Gene3D G3DSA:2.40.50.140 4 69 3.5E-10 T 18-10-2018 RU84_04760 9519ee6cb2dc407bf9fd15313443b567 237 Pfam PF11967 Recombination protein O N terminal 3 41 1.2E-8 T 18-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal RU84_04760 9519ee6cb2dc407bf9fd15313443b567 237 TIGRFAM TIGR00613 reco: DNA repair protein RecO 9 228 4.1E-14 T 18-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 RU84_08335 26c60b03f541fdb4a917f856422cdc43 429 Pfam PF07158 Dicarboxylate carrier protein MatC N-terminus 4 147 4.7E-33 T 18-10-2018 IPR009827 Dicarboxylate carrier MatC N-terminal RU84_13975 f8857aabee6b6213440e568d009bd628 87 SUPERFAMILY SSF54862 4 76 1.71E-19 T 18-10-2018 RU84_13975 f8857aabee6b6213440e568d009bd628 87 Pfam PF00037 4Fe-4S binding domain 5 24 1.9E-6 T 18-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain RU84_13975 f8857aabee6b6213440e568d009bd628 87 Gene3D G3DSA:3.30.70.20 2 81 7.8E-32 T 18-10-2018 RU84_13975 f8857aabee6b6213440e568d009bd628 87 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 18-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site RU84_09045 e945d73f2b6b36c85382ccb2ec61970b 772 Pfam PF07715 TonB-dependent Receptor Plug Domain 80 182 1.5E-17 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_09045 e945d73f2b6b36c85382ccb2ec61970b 772 Pfam PF00593 TonB dependent receptor 275 771 4.8E-36 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_09045 e945d73f2b6b36c85382ccb2ec61970b 772 SUPERFAMILY SSF56935 57 772 2.82E-96 T 18-10-2018 RU84_09045 e945d73f2b6b36c85382ccb2ec61970b 772 Gene3D G3DSA:2.170.130.10 65 187 4.7E-22 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_09045 e945d73f2b6b36c85382ccb2ec61970b 772 Gene3D G3DSA:2.40.170.20 190 771 1.0E-58 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_08275 7a7466160a67ae8282e76ed5bc4d6bf7 300 Gene3D G3DSA:1.20.1530.20 2 288 1.9E-73 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_08275 7a7466160a67ae8282e76ed5bc4d6bf7 300 Pfam PF01758 Sodium Bile acid symporter family 11 194 1.2E-32 T 18-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 RU84_02065 c95f575e30547f3d14d843a18a08609e 105 Pfam PF00467 KOW motif 6 34 4.4E-7 T 18-10-2018 IPR005824 KOW RU84_02065 c95f575e30547f3d14d843a18a08609e 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 37 100 2.0E-21 T 18-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02065 c95f575e30547f3d14d843a18a08609e 105 SUPERFAMILY SSF50104 3 99 6.39E-30 T 18-10-2018 IPR008991 Translation protein SH3-like domain superfamily RU84_02065 c95f575e30547f3d14d843a18a08609e 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 18-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02065 c95f575e30547f3d14d843a18a08609e 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 95 19.332 T 18-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02065 c95f575e30547f3d14d843a18a08609e 105 SMART SM00739 3 30 1.7E-6 T 18-10-2018 IPR005824 KOW RU84_02065 c95f575e30547f3d14d843a18a08609e 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 1.2E-33 T 18-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02065 c95f575e30547f3d14d843a18a08609e 105 Gene3D G3DSA:2.30.30.30 1 102 2.9E-34 T 18-10-2018 IPR014722 Ribosomal protein L2, domain 2 RU84_18475 8976d722bc3912d0b77bcd6a34d534eb 194 Pfam PF00589 Phage integrase family 22 182 1.0E-25 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_18475 8976d722bc3912d0b77bcd6a34d534eb 194 SUPERFAMILY SSF56349 7 193 4.41E-35 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_18475 8976d722bc3912d0b77bcd6a34d534eb 194 Gene3D G3DSA:1.10.443.10 8 194 1.0E-34 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_10010 0f2e9a545e5592f0284439a969a2c6a5 489 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 25 461 1.2E-91 T 18-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RU84_10010 0f2e9a545e5592f0284439a969a2c6a5 489 Gene3D G3DSA:1.10.4160.10 8 485 4.5E-103 T 18-10-2018 IPR038271 Purine-cytosine permease superfamily RU84_14960 73ae215b63fc57cc8d27dfe8a6cb7717 331 Gene3D G3DSA:3.20.20.140 1 331 8.1E-96 T 18-10-2018 RU84_14960 73ae215b63fc57cc8d27dfe8a6cb7717 331 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 329 1.9E-109 T 18-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RU84_14960 73ae215b63fc57cc8d27dfe8a6cb7717 331 SUPERFAMILY SSF51556 3 324 5.96E-74 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_14960 73ae215b63fc57cc8d27dfe8a6cb7717 331 Hamap MF_00540 Adenosine deaminase [add]. 1 331 51.991 T 18-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 RU84_14960 73ae215b63fc57cc8d27dfe8a6cb7717 331 Pfam PF00962 Adenosine/AMP deaminase 6 327 2.6E-91 T 18-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RU84_04060 132fa03f96be73daadf3cf7db04fe4e7 216 Pfam PF01728 FtsJ-like methyltransferase 35 210 3.2E-58 T 18-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 RU84_04060 132fa03f96be73daadf3cf7db04fe4e7 216 PIRSF PIRSF005461 3 216 2.2E-80 T 18-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 RU84_04060 132fa03f96be73daadf3cf7db04fe4e7 216 SUPERFAMILY SSF53335 34 212 3.08E-40 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_04060 132fa03f96be73daadf3cf7db04fe4e7 216 Gene3D G3DSA:3.40.50.150 31 215 8.3E-61 T 18-10-2018 RU84_04060 132fa03f96be73daadf3cf7db04fe4e7 216 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 19 212 30.905 T 18-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 Gene3D G3DSA:3.40.50.150 1 149 1.3E-40 T 18-10-2018 RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 Pfam PF08468 Methyltransferase small domain N-terminal 5 156 2.1E-45 T 18-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 266 272 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 337 39.511 T 18-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 Pfam PF05175 Methyltransferase small domain 164 333 1.1E-50 T 18-10-2018 IPR007848 Methyltransferase small domain GO:0008168 RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 SUPERFAMILY SSF53335 149 333 6.1E-26 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_03265 3eafdde9a976e23ab5a677d97361161d 337 Gene3D G3DSA:3.40.50.150 151 337 1.3E-40 T 18-10-2018 RU84_06345 819ee43428599322a999f4fbe8775eb7 420 SUPERFAMILY SSF51905 1 418 1.81E-42 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_06345 819ee43428599322a999f4fbe8775eb7 420 Gene3D G3DSA:3.50.50.60 3 403 3.7E-27 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_06345 819ee43428599322a999f4fbe8775eb7 420 Gene3D G3DSA:3.30.70.1990 282 368 3.7E-27 T 18-10-2018 RU84_06345 819ee43428599322a999f4fbe8775eb7 420 Gene3D G3DSA:1.10.405.20 75 199 3.7E-27 T 18-10-2018 RU84_06345 819ee43428599322a999f4fbe8775eb7 420 Pfam PF13450 NAD(P)-binding Rossmann-like domain 5 74 4.4E-15 T 18-10-2018 RU84_05240 af15657424005ef0feea8f061a39ef39 338 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 11 332 3.9E-133 T 18-10-2018 IPR022462 Lysine-2,3-aminomutase-like RU84_05240 af15657424005ef0feea8f061a39ef39 338 Pfam PF04055 Radical SAM superfamily 113 214 5.3E-8 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_05240 af15657424005ef0feea8f061a39ef39 338 PIRSF PIRSF004911 3 337 5.1E-108 T 18-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase RU84_05240 af15657424005ef0feea8f061a39ef39 338 TIGRFAM TIGR00238 TIGR00238: KamA family protein 8 325 2.4E-96 T 18-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase RU84_05240 af15657424005ef0feea8f061a39ef39 338 Gene3D G3DSA:3.20.20.70 46 331 5.7E-85 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_05240 af15657424005ef0feea8f061a39ef39 338 Pfam PF13394 4Fe-4S single cluster domain 114 178 1.5E-5 T 18-10-2018 RU84_05240 af15657424005ef0feea8f061a39ef39 338 SUPERFAMILY SSF102114 98 321 4.32E-21 T 18-10-2018 RU84_18620 eb62cdeffb39919d5c360e749e6e1543 234 Pfam PF13610 DDE domain 74 212 7.9E-48 T 18-10-2018 IPR032874 DDE domain RU84_18620 eb62cdeffb39919d5c360e749e6e1543 234 SUPERFAMILY SSF53098 72 191 2.12E-8 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_04560 19323f9bb1744ae72afd8a767b824442 150 TIGRFAM TIGR02801 tolR: protein TolR 17 147 5.0E-44 T 18-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 RU84_04560 19323f9bb1744ae72afd8a767b824442 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 148 1.8E-29 T 18-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RU84_04560 19323f9bb1744ae72afd8a767b824442 150 Gene3D G3DSA:3.30.420.270 65 144 1.2E-12 T 18-10-2018 RU84_04560 19323f9bb1744ae72afd8a767b824442 150 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 10 147 27.65 T 18-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 RU84_10105 56eaef6d9eb94c0c3f51951d1376959d 200 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 7 197 5.4E-47 T 18-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 RU84_10105 56eaef6d9eb94c0c3f51951d1376959d 200 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 7 198 6.6E-49 T 18-10-2018 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 Gene3D G3DSA:1.10.10.10 7 88 1.1E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 5.6E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 5.6E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 5.6E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 Pfam PF03466 LysR substrate binding domain 94 290 8.1E-34 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 Gene3D G3DSA:3.40.190.290 94 289 1.6E-39 T 18-10-2018 RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 2.8E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 SUPERFAMILY SSF46785 5 115 1.36E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_05075 f116aabdce1a54ad9a23fb228dbfeef1 298 SUPERFAMILY SSF53850 94 294 2.48E-37 T 18-10-2018 RU84_13520 d96ca6f6ad297f8a9968b83e2c34b0f2 490 Gene3D G3DSA:3.40.50.150 12 211 8.1E-46 T 18-10-2018 RU84_13520 d96ca6f6ad297f8a9968b83e2c34b0f2 490 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 175 188 6.5E-9 T 18-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RU84_13520 d96ca6f6ad297f8a9968b83e2c34b0f2 490 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 12 28 6.5E-9 T 18-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RU84_13520 d96ca6f6ad297f8a9968b83e2c34b0f2 490 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 117 131 6.5E-9 T 18-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RU84_13520 d96ca6f6ad297f8a9968b83e2c34b0f2 490 SUPERFAMILY SSF53335 13 478 6.47E-72 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_13520 d96ca6f6ad297f8a9968b83e2c34b0f2 490 Pfam PF00145 C-5 cytosine-specific DNA methylase 13 195 9.2E-23 T 18-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 RU84_08460 0fe988c14c7186be519e3a8969c6b223 269 Pfam PF01925 Sulfite exporter TauE/SafE 5 264 1.4E-35 T 18-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RU84_18140 fafc3292445a31375a39ff3cb4ed96c4 106 Gene3D G3DSA:3.10.450.160 28 106 2.8E-13 T 18-10-2018 RU84_18140 fafc3292445a31375a39ff3cb4ed96c4 106 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 50 104 1.0E-12 T 18-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB RU84_18140 fafc3292445a31375a39ff3cb4ed96c4 106 Pfam PF11776 Nickel/cobalt transporter regulator 53 102 1.3E-13 T 18-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB RU84_07270 b229082c2368b007e04cff0d80333696 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 18-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07270 b229082c2368b007e04cff0d80333696 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 142 2.0E-66 T 18-10-2018 RU84_07270 b229082c2368b007e04cff0d80333696 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 144 1.8E-62 T 18-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07270 b229082c2368b007e04cff0d80333696 151 SUPERFAMILY SSF52304 4 146 3.27E-62 T 18-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07270 b229082c2368b007e04cff0d80333696 151 PIRSF PIRSF001399 1 148 2.3E-62 T 18-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07270 b229082c2368b007e04cff0d80333696 151 Pfam PF01220 Dehydroquinase class II 5 141 5.8E-62 T 18-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07270 b229082c2368b007e04cff0d80333696 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 72.729 T 18-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_07270 b229082c2368b007e04cff0d80333696 151 Gene3D G3DSA:3.40.50.9100 1 151 1.5E-68 T 18-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 RU84_18445 15996107213dc54d380ff8a48908f667 567 Gene3D G3DSA:3.30.470.30 143 336 9.6E-8 T 18-10-2018 RU84_18445 15996107213dc54d380ff8a48908f667 567 SUPERFAMILY SSF50249 311 407 6.17E-7 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_18445 15996107213dc54d380ff8a48908f667 567 SUPERFAMILY SSF56091 135 337 1.67E-20 T 18-10-2018 RU84_18445 15996107213dc54d380ff8a48908f667 567 Pfam PF01068 ATP dependent DNA ligase domain 155 337 2.1E-11 T 18-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 RU84_11830 2093391f6576dd7a098a0fac5752d436 481 Gene3D G3DSA:3.30.9.10 168 390 2.5E-57 T 18-10-2018 RU84_11830 2093391f6576dd7a098a0fac5752d436 481 SUPERFAMILY SSF51905 72 364 1.0E-37 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11830 2093391f6576dd7a098a0fac5752d436 481 Gene3D G3DSA:3.50.50.60 74 428 2.5E-57 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11830 2093391f6576dd7a098a0fac5752d436 481 Pfam PF01266 FAD dependent oxidoreductase 74 428 4.3E-46 T 18-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 RU84_04875 be16a992bff95feb23874ea217dea48a 402 Pfam PF07759 Protein of unknown function (DUF1615) 52 396 1.7E-118 T 18-10-2018 IPR011673 Protein of unknown function DUF1615 RU84_04875 be16a992bff95feb23874ea217dea48a 402 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 21 396 1.0E-160 T 18-10-2018 IPR011673 Protein of unknown function DUF1615 RU84_11635 feee07dc75342863cba71d0cd2fa9367 561 ProSitePatterns PS00523 Sulfatases signature 1. 78 90 - T 18-10-2018 IPR024607 Sulfatase, conserved site RU84_11635 feee07dc75342863cba71d0cd2fa9367 561 Gene3D G3DSA:3.40.720.10 31 474 4.4E-128 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_11635 feee07dc75342863cba71d0cd2fa9367 561 Pfam PF00884 Sulfatase 34 445 1.4E-76 T 18-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RU84_11635 feee07dc75342863cba71d0cd2fa9367 561 SUPERFAMILY SSF53649 32 552 3.93E-136 T 18-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RU84_11635 feee07dc75342863cba71d0cd2fa9367 561 Gene3D G3DSA:3.30.1120.10 480 559 3.4E-17 T 18-10-2018 RU84_10250 aed9fbf03229a3b7c4511b6811cd0afb 221 Gene3D G3DSA:1.10.3720.10 1 221 3.5E-44 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10250 aed9fbf03229a3b7c4511b6811cd0afb 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 217 1.5E-17 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_10250 aed9fbf03229a3b7c4511b6811cd0afb 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 1.5E-16 T 18-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RU84_10250 aed9fbf03229a3b7c4511b6811cd0afb 221 SUPERFAMILY SSF161098 14 209 3.05E-36 T 18-10-2018 IPR035906 MetI-like superfamily RU84_19280 fb8a6667e0d5c0c8877c42efe0e150f9 178 Pfam PF06412 Conjugal transfer protein TraD 97 155 5.8E-8 T 18-10-2018 IPR009444 Conjugal transfer, TraD, alpha-type GO:0000746 RU84_18725 fb89a91c18bd9064e37cd9d27f3e4505 100 SUPERFAMILY SSF54909 1 98 1.22E-26 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_18725 fb89a91c18bd9064e37cd9d27f3e4505 100 Gene3D G3DSA:3.30.70.100 1 93 7.7E-32 T 18-10-2018 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 Gene3D G3DSA:1.20.1090.10 172 360 2.0E-75 T 18-10-2018 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 16 352 1.7E-113 T 18-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 Pfam PF01761 3-dehydroquinate synthase 66 323 7.0E-107 T 18-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 PIRSF PIRSF001455 7 359 3.6E-104 T 18-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 Gene3D G3DSA:3.40.50.1970 1 171 1.3E-65 T 18-10-2018 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 SUPERFAMILY SSF56796 3 354 1.06E-111 T 18-10-2018 RU84_01465 c88f0c905050c932dc6673f163a6da9a 360 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 69.376 T 18-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 RU84_18755 7f1d03382964bf1ae7b5b3a51cb8ddf2 153 Pfam PF11726 Inovirus Gp2 32 146 2.8E-11 T 18-10-2018 RU84_19035 ad1c103b17d5c4d31dce4b548f757ea6 467 Pfam PF03796 DnaB-like helicase C terminal domain 202 459 2.8E-12 T 18-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 RU84_19035 ad1c103b17d5c4d31dce4b548f757ea6 467 Gene3D G3DSA:3.40.50.300 180 462 4.2E-34 T 18-10-2018 RU84_19035 ad1c103b17d5c4d31dce4b548f757ea6 467 SUPERFAMILY SSF52540 195 395 2.92E-16 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17595 0cbe4a2b70ca4a7b9ff763ac90564710 262 SMART SM00382 38 213 9.3E-10 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_17595 0cbe4a2b70ca4a7b9ff763ac90564710 262 SUPERFAMILY SSF52540 7 225 1.23E-53 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17595 0cbe4a2b70ca4a7b9ff763ac90564710 262 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_17595 0cbe4a2b70ca4a7b9ff763ac90564710 262 Gene3D G3DSA:3.40.50.300 7 241 2.0E-56 T 18-10-2018 RU84_17595 0cbe4a2b70ca4a7b9ff763ac90564710 262 Pfam PF00005 ABC transporter 29 156 2.3E-27 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_13895 56168b44660451d4e5e95e331ed82a17 409 SUPERFAMILY SSF53901 2 251 3.04E-58 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_13895 56168b44660451d4e5e95e331ed82a17 409 SUPERFAMILY SSF53901 213 407 1.48E-62 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_13895 56168b44660451d4e5e95e331ed82a17 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.1E-39 T 18-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal RU84_13895 56168b44660451d4e5e95e331ed82a17 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 364 2.4E-31 T 18-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal RU84_13895 56168b44660451d4e5e95e331ed82a17 409 Gene3D G3DSA:3.40.47.10 258 408 1.5E-44 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_13895 56168b44660451d4e5e95e331ed82a17 409 SMART SM00825 Beta-ketoacyl synthase 4 409 1.9E-13 T 18-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain RU84_13895 56168b44660451d4e5e95e331ed82a17 409 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 18-10-2018 IPR018201 Beta-ketoacyl synthase, active site RU84_13895 56168b44660451d4e5e95e331ed82a17 409 Gene3D G3DSA:3.40.47.10 1 252 1.9E-59 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_08770 5a925b8e0a1728a0f994abd91194d2ba 303 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 281 7.9E-57 T 18-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 RU84_09150 38ccff9fed00891e823f620f837052f6 128 SUPERFAMILY SSF82649 1 125 3.92E-49 T 18-10-2018 RU84_09150 38ccff9fed00891e823f620f837052f6 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.1E-68 T 18-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 RU84_09150 38ccff9fed00891e823f620f837052f6 128 Gene3D G3DSA:3.90.1010.10 1 128 3.0E-58 T 18-10-2018 RU84_09150 38ccff9fed00891e823f620f837052f6 128 Pfam PF01592 NifU-like N terminal domain 2 127 1.2E-56 T 18-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 RU84_03315 a9618d0635003a627335287df0a33620 307 Pfam PF03547 Membrane transport protein 2 145 9.3E-15 T 18-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RU84_03315 a9618d0635003a627335287df0a33620 307 Pfam PF03547 Membrane transport protein 152 297 5.3E-11 T 18-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 238 257 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 367 387 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 86 111 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 340 359 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 10 30 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 156 178 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 305 331 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 PRINTS PR00173 Glutamate-aspartate symporter signature 56 76 6.1E-54 T 18-10-2018 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 Pfam PF00375 Sodium:dicarboxylate symporter family 12 412 2.1E-118 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 Gene3D G3DSA:1.10.3860.10 3 420 3.1E-125 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_01965 2dfdae47871a82cde9b1ea3c9e0987e0 421 SUPERFAMILY SSF118215 12 413 2.62E-107 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_18250 591b7b60ee8702c7983bae30fbad5ee9 356 SUPERFAMILY SSF53474 68 343 4.61E-62 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_18250 591b7b60ee8702c7983bae30fbad5ee9 356 Pfam PF07859 alpha/beta hydrolase fold 123 328 1.3E-62 T 18-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RU84_18250 591b7b60ee8702c7983bae30fbad5ee9 356 Gene3D G3DSA:3.40.50.1820 48 351 6.5E-73 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 Pfam PF09298 Fumarylacetoacetase N-terminal 20 122 1.2E-31 T 18-10-2018 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 Gene3D G3DSA:3.90.850.10 120 421 4.7E-129 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 SUPERFAMILY SSF56529 124 419 3.4E-104 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 Gene3D G3DSA:2.30.30.230 1 119 6.7E-40 T 18-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 128 416 1.6E-57 T 18-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 SUPERFAMILY SSF63433 7 122 4.18E-36 T 18-10-2018 IPR036462 Fumarylacetoacetase, N-terminal domain superfamily GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RU84_00350 f47c8a90f2ff34ffaf222975cd6598e9 435 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 7 420 8.8E-178 T 18-10-2018 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|Reactome: R-HSA-71182 RU84_03855 9d9d69256ee694913b2d7d6f90c4bb25 126 Pfam PF01638 HxlR-like helix-turn-helix 23 110 2.6E-23 T 18-10-2018 IPR002577 Helix-turn-helix, HxlR type RU84_03855 9d9d69256ee694913b2d7d6f90c4bb25 126 SUPERFAMILY SSF46785 8 124 3.88E-29 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_03855 9d9d69256ee694913b2d7d6f90c4bb25 126 Gene3D G3DSA:1.10.10.10 1 121 1.4E-34 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08140 00f1b801f58d493f049789d005acf146 304 SUPERFAMILY SSF53850 90 295 5.52E-26 T 18-10-2018 RU84_08140 00f1b801f58d493f049789d005acf146 304 Gene3D G3DSA:3.40.190.10 162 268 1.1E-69 T 18-10-2018 RU84_08140 00f1b801f58d493f049789d005acf146 304 SUPERFAMILY SSF46785 1 83 7.35E-23 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08140 00f1b801f58d493f049789d005acf146 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.6E-21 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08140 00f1b801f58d493f049789d005acf146 304 Gene3D G3DSA:3.40.190.10 92 293 1.1E-69 T 18-10-2018 RU84_08140 00f1b801f58d493f049789d005acf146 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.2E-10 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08140 00f1b801f58d493f049789d005acf146 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.2E-10 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08140 00f1b801f58d493f049789d005acf146 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.2E-10 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08140 00f1b801f58d493f049789d005acf146 304 Gene3D G3DSA:1.10.10.10 1 91 2.7E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08140 00f1b801f58d493f049789d005acf146 304 Pfam PF03466 LysR substrate binding domain 90 289 4.0E-28 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10710 b7e02d1628b23a2bad865a65eabc1ffc 201 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 15 43 8.0E-4 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_10710 b7e02d1628b23a2bad865a65eabc1ffc 201 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 3.2E-9 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_10710 b7e02d1628b23a2bad865a65eabc1ffc 201 Gene3D G3DSA:2.160.10.10 3 182 2.6E-52 T 18-10-2018 RU84_10710 b7e02d1628b23a2bad865a65eabc1ffc 201 SUPERFAMILY SSF51161 2 171 6.24E-42 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_05585 697b72a29ef5873edd90fc81c537074f 127 Gene3D G3DSA:1.20.1290.10 3 126 2.4E-37 T 18-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RU84_05585 697b72a29ef5873edd90fc81c537074f 127 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 7.4E-23 T 18-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RU84_05585 697b72a29ef5873edd90fc81c537074f 127 SUPERFAMILY SSF69118 4 123 1.31E-34 T 18-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 RU84_02810 2b758327ec83bfefec8dbdbfd75db8e0 816 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 191 540 2.6E-70 T 18-10-2018 IPR010090 Phage tail tape measure protein RU84_02810 2b758327ec83bfefec8dbdbfd75db8e0 816 Pfam PF10145 Phage-related minor tail protein 230 432 4.6E-31 T 18-10-2018 IPR010090 Phage tail tape measure protein RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 SUPERFAMILY SSF53223 7 270 1.15E-110 T 18-10-2018 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 4.0E-102 T 18-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 SUPERFAMILY SSF51735 271 562 6.49E-95 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PIRSF PIRSF000106 4 563 9.3E-230 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 1.8E-78 T 18-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 Gene3D G3DSA:3.40.50.720 269 564 2.1E-109 T 18-10-2018 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 Gene3D G3DSA:3.40.50.10380 16 268 6.3E-115 T 18-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 SMART SM01274 81 261 1.4E-107 T 18-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 18-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.271 T 18-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 SMART SM00919 271 531 7.5E-132 T 18-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 87 111 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 408 424 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 183 205 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 267 283 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 242 260 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 298 314 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_17615 15f4e135602d06086cc1949e9c74bdaa 565 PRINTS PR00072 Malic enzyme signature 147 176 1.1E-74 T 18-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 RU84_13020 f4030bfb8e39acbbfff330cd8e1f652e 101 SUPERFAMILY SSF50022 1 101 4.98E-32 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_13020 f4030bfb8e39acbbfff330cd8e1f652e 101 Gene3D G3DSA:2.102.10.10 1 101 1.5E-33 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_13020 f4030bfb8e39acbbfff330cd8e1f652e 101 Pfam PF00355 Rieske [2Fe-2S] domain 2 89 2.4E-21 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_05020 8c4e56ce5bc54f899b2f33a65cb9bbd2 125 Pfam PF06127 Protein of unknown function (DUF962) 20 112 3.9E-31 T 18-10-2018 IPR009305 Protein of unknown function DUF962 RU84_07175 6082333cb31060bf613a34f9256c7f67 144 Pfam PF13279 Thioesterase-like superfamily 21 136 2.4E-13 T 18-10-2018 RU84_07175 6082333cb31060bf613a34f9256c7f67 144 Gene3D G3DSA:3.10.129.10 2 142 1.1E-45 T 18-10-2018 RU84_07175 6082333cb31060bf613a34f9256c7f67 144 SUPERFAMILY SSF54637 10 143 5.67E-35 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Gene3D G3DSA:3.40.50.300 171 350 7.2E-49 T 18-10-2018 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 SUPERFAMILY SSF52540 4 168 1.82E-44 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 SUPERFAMILY SSF52540 137 438 7.76E-65 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Gene3D G3DSA:3.30.300.20 352 434 7.4E-21 T 18-10-2018 IPR015946 K homology domain-like, alpha/beta RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.3E-9 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.3E-9 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 352 432 6.9E-27 T 18-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Gene3D G3DSA:3.40.50.300 1 161 1.6E-43 T 18-10-2018 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 432 1.2E-179 T 18-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 PIRSF PIRSF006485 1 440 5.7E-174 T 18-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Hamap MF_00195 GTPase Der [der]. 2 435 38.235 T 18-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Pfam PF01926 50S ribosome-binding GTPase 179 296 9.4E-24 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 Pfam PF01926 50S ribosome-binding GTPase 5 119 1.6E-24 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 134 4.6E-22 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_15830 e0137e4b2ea3719620de22d8e3b1c644 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 177 339 1.6E-22 T 18-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 RU84_06395 86a3ee547a0cdf39eed35892b4672cce 242 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 232 1.3E-73 T 18-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 RU84_06395 86a3ee547a0cdf39eed35892b4672cce 242 Gene3D G3DSA:3.40.50.1860 4 223 1.2E-84 T 18-10-2018 RU84_06395 86a3ee547a0cdf39eed35892b4672cce 242 Gene3D G3DSA:3.40.50.1860 104 214 1.2E-84 T 18-10-2018 RU84_06395 86a3ee547a0cdf39eed35892b4672cce 242 SUPERFAMILY SSF53681 118 228 1.54E-35 T 18-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_06395 86a3ee547a0cdf39eed35892b4672cce 242 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 223 2.0E-60 T 18-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_06395 86a3ee547a0cdf39eed35892b4672cce 242 SUPERFAMILY SSF53681 1 113 2.62E-36 T 18-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.8E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.8E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.8E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 SUPERFAMILY SSF46785 1 108 1.96E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 Gene3D G3DSA:1.10.10.10 1 90 1.2E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 SUPERFAMILY SSF53850 90 293 4.24E-37 T 18-10-2018 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 Gene3D G3DSA:3.40.190.290 91 293 1.8E-43 T 18-10-2018 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.7E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_03735 7e71441b7d69ae05230f96e8c8f00f26 294 Pfam PF03466 LysR substrate binding domain 88 290 1.2E-39 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 5.2E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 28 46 5.2E-6 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 Gene3D G3DSA:3.40.50.300 5 198 2.0E-44 T 18-10-2018 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 Pfam PF07670 Nucleoside recognition 451 587 7.5E-24 T 18-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 Pfam PF07670 Nucleoside recognition 283 374 1.2E-11 T 18-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 Pfam PF07664 Ferrous iron transport protein B C terminus 394 446 3.8E-13 T 18-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 Pfam PF02421 Ferrous iron transport protein B 6 165 1.2E-56 T 18-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 RU84_17170 0183b02fca88963e7e7e704b0ed810e2 617 SUPERFAMILY SSF52540 5 170 1.67E-37 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_10895 321351860a186a54eab7afde12c89730 410 Pfam PF01566 Natural resistance-associated macrophage protein 44 376 1.0E-24 T 18-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 RU84_14470 6cd5771473697dee78cb6b3d1b181ca8 205 Pfam PF01300 Telomere recombination 22 197 1.6E-42 T 18-10-2018 IPR006070 YrdC-like domain GO:0003725 RU84_14470 6cd5771473697dee78cb6b3d1b181ca8 205 SUPERFAMILY SSF55821 3 203 7.02E-59 T 18-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RU84_14470 6cd5771473697dee78cb6b3d1b181ca8 205 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 6 200 3.1E-59 T 18-10-2018 IPR006070 YrdC-like domain GO:0003725 RU84_14470 6cd5771473697dee78cb6b3d1b181ca8 205 Gene3D G3DSA:3.90.870.10 2 205 5.2E-60 T 18-10-2018 RU84_17155 a79050cd4a8da76912ebfbc7b78bbee9 398 Pfam PF01098 Cell cycle protein 33 386 3.1E-100 T 18-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_17155 a79050cd4a8da76912ebfbc7b78bbee9 398 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 344 368 - T 18-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_17155 a79050cd4a8da76912ebfbc7b78bbee9 398 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 384 1.1E-122 T 18-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_17155 a79050cd4a8da76912ebfbc7b78bbee9 398 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 28 396 38.052 T 18-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 Pfam PF05195 Aminopeptidase P, N-terminal domain 8 126 2.4E-35 T 18-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 SMART SM01011 3 139 1.1E-51 T 18-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 SUPERFAMILY SSF53092 3 176 5.49E-46 T 18-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 Pfam PF00557 Metallopeptidase family M24 182 413 1.4E-62 T 18-10-2018 IPR000994 Peptidase M24 RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 Gene3D G3DSA:3.40.350.10 4 173 8.3E-51 T 18-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 SUPERFAMILY SSF55920 177 436 5.63E-85 T 18-10-2018 IPR036005 Creatinase/aminopeptidase-like RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 349 361 - T 18-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site RU84_12215 56e718c74479ca464dc5b2914809cbe5 440 Gene3D G3DSA:3.90.230.10 174 440 2.7E-99 T 18-10-2018 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Pfam PF13954 PapC N-terminal domain 47 188 6.4E-45 T 18-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 SUPERFAMILY SSF141729 67 180 9.02E-34 T 18-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Gene3D G3DSA:3.10.20.410 44 166 4.0E-32 T 18-10-2018 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Pfam PF00577 Outer membrane usher protein 206 754 2.4E-152 T 18-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Pfam PF13953 PapC C-terminal domain 764 827 5.8E-17 T 18-10-2018 IPR025949 PapC-like, C-terminal domain RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Gene3D G3DSA:2.60.40.3110 278 367 3.4E-35 T 18-10-2018 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Gene3D G3DSA:2.60.40.2610 669 759 4.8E-28 T 18-10-2018 RU84_09680 d392119fd46464dec5dd03bc627c26b4 845 Gene3D G3DSA:2.60.40.2070 762 845 6.6E-16 T 18-10-2018 RU84_13745 396ead9fba58660aee79dffdca5a97be 107 Hamap MF_00460 Protein RnfH [rnfH]. 5 93 21.473 T 18-10-2018 IPR005346 RnfH protein RU84_13745 396ead9fba58660aee79dffdca5a97be 107 Pfam PF03658 RnfH family Ubiquitin 6 85 4.6E-24 T 18-10-2018 IPR005346 RnfH protein RU84_13745 396ead9fba58660aee79dffdca5a97be 107 SUPERFAMILY SSF54285 6 77 4.58E-19 T 18-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp RU84_13745 396ead9fba58660aee79dffdca5a97be 107 Gene3D G3DSA:3.10.20.280 1 87 1.2E-24 T 18-10-2018 IPR037021 RnfH superfamily RU84_13040 e82cd5009ecca44a0d08ac0f923fcb9a 262 Gene3D G3DSA:1.10.12.10 205 262 2.3E-19 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_13040 e82cd5009ecca44a0d08ac0f923fcb9a 262 Gene3D G3DSA:3.90.226.10 2 204 8.3E-57 T 18-10-2018 RU84_13040 e82cd5009ecca44a0d08ac0f923fcb9a 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 261 4.4E-42 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_13040 e82cd5009ecca44a0d08ac0f923fcb9a 262 SUPERFAMILY SSF52096 7 261 4.98E-63 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 Pfam PF00216 Bacterial DNA-binding protein 1 89 7.9E-36 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 Gene3D G3DSA:4.10.520.10 1 90 5.4E-39 T 18-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 SMART SM00411 1 90 1.3E-47 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 18-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.3E-20 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.3E-20 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.3E-20 T 18-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 RU84_09125 94ba72ee0b3b30658dd6ec86f643e8ef 90 SUPERFAMILY SSF47729 1 89 2.06E-34 T 18-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 RU84_06040 d693afa192b450f22ffe1b7300da1105 502 SUPERFAMILY SSF52151 156 484 2.88E-46 T 18-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase RU84_06040 d693afa192b450f22ffe1b7300da1105 502 Pfam PF01734 Patatin-like phospholipase 157 339 1.9E-24 T 18-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 RU84_06040 d693afa192b450f22ffe1b7300da1105 502 Gene3D G3DSA:3.40.1090.10 237 367 1.1E-13 T 18-10-2018 RU84_06040 d693afa192b450f22ffe1b7300da1105 502 Pfam PF11815 Domain of unknown function (DUF3336) 15 149 5.6E-35 T 18-10-2018 IPR021771 Triacylglycerol lipase GO:0004806|GO:0006629 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 350 7.9E-55 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 Pfam PF13533 Biotin-lipoyl like 73 120 4.0E-8 T 18-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 Pfam PF13437 HlyD family secretion protein 183 273 4.2E-18 T 18-10-2018 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 Gene3D G3DSA:2.40.420.20 50 350 6.6E-50 T 18-10-2018 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 Gene3D G3DSA:2.40.50.100 72 212 6.6E-50 T 18-10-2018 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 Gene3D G3DSA:2.40.30.170 60 292 6.6E-50 T 18-10-2018 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 SUPERFAMILY SSF111369 61 242 3.01E-21 T 18-10-2018 RU84_03365 a2fa0bb7a1183840949a427657491e1b 372 Gene3D G3DSA:1.10.287.470 110 176 6.6E-50 T 18-10-2018 RU84_11845 e356b78390eb80411f6b01b2405a1b4f 1078 Pfam PF13086 AAA domain 751 817 3.8E-8 T 18-10-2018 RU84_11845 e356b78390eb80411f6b01b2405a1b4f 1078 SUPERFAMILY SSF52540 306 572 1.14E-5 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11845 e356b78390eb80411f6b01b2405a1b4f 1078 Pfam PF13087 AAA domain 876 1050 3.6E-17 T 18-10-2018 RU84_11845 e356b78390eb80411f6b01b2405a1b4f 1078 SUPERFAMILY SSF52540 294 1056 5.99E-35 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11845 e356b78390eb80411f6b01b2405a1b4f 1078 Gene3D G3DSA:3.40.50.300 603 837 2.7E-12 T 18-10-2018 RU84_11845 e356b78390eb80411f6b01b2405a1b4f 1078 Gene3D G3DSA:3.40.50.300 881 1074 2.1E-26 T 18-10-2018 RU84_11480 71093100be9f63c0b59392916c805e67 259 Pfam PF01435 Peptidase family M48 75 246 4.0E-33 T 18-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 SUPERFAMILY SSF51735 117 293 1.21E-46 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 SMART SM00829 16 328 2.2E-62 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 Gene3D G3DSA:3.40.50.720 126 267 6.2E-111 T 18-10-2018 RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 Gene3D G3DSA:3.90.180.10 19 328 6.2E-111 T 18-10-2018 RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 7 330 6.7E-147 T 18-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 Pfam PF00107 Zinc-binding dehydrogenase 157 274 2.2E-25 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 SUPERFAMILY SSF50129 7 146 1.89E-42 T 18-10-2018 IPR011032 GroES-like superfamily RU84_03645 9d3e03333fbbf021ad0dc1e0bd03151c 332 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 34 105 1.5E-11 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 SUPERFAMILY SSF55681 11 203 3.4E-62 T 18-10-2018 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 PIRSF PIRSF016262 4 203 5.8E-58 T 18-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 Hamap MF_00013 Octanoyltransferase [lipB]. 7 206 33.589 T 18-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 78 131 8.0E-23 T 18-10-2018 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 74 89 - T 18-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 Gene3D G3DSA:3.30.930.10 5 204 2.7E-56 T 18-10-2018 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 160 2.7E-9 T 18-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 RU84_03880 6420f1f07143313d1da5f2f8ec867ea8 217 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 30 186 3.2E-57 T 18-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_16485 0453f298feb62e33f0865a6621692a2f 210 Pfam PF02390 Putative methyltransferase 24 176 1.0E-17 T 18-10-2018 RU84_16485 0453f298feb62e33f0865a6621692a2f 210 Gene3D G3DSA:3.40.50.150 2 195 1.8E-25 T 18-10-2018 RU84_16485 0453f298feb62e33f0865a6621692a2f 210 SUPERFAMILY SSF53335 18 160 3.61E-11 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_07960 440b446d7e8d975496658029e238a6a7 483 Pfam PF13229 Right handed beta helix region 121 253 2.2E-11 T 18-10-2018 IPR039448 Right handed beta helix domain RU84_07960 440b446d7e8d975496658029e238a6a7 483 Gene3D G3DSA:2.160.20.10 66 336 1.2E-13 T 18-10-2018 IPR012334 Pectin lyase fold RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 157 180 1.3 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 312 351 7000.0 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 135 156 1000.0 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 286 307 110.0 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 192 213 93.0 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 265 285 5600.0 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SMART SM00710 243 263 3700.0 T 18-10-2018 IPR006626 Parallel beta-helix repeat RU84_07960 440b446d7e8d975496658029e238a6a7 483 SUPERFAMILY SSF51126 9 338 1.93E-31 T 18-10-2018 IPR011050 Pectin lyase fold/virulence factor RU84_03030 9d0b5f6c6049092426dd03c148107252 600 SUPERFAMILY SSF56645 41 280 2.09E-59 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Gene3D G3DSA:2.40.110.10 162 288 6.5E-29 T 18-10-2018 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Gene3D G3DSA:1.20.140.10 289 498 6.6E-41 T 18-10-2018 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 469 594 2.3E-37 T 18-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 7.1E-19 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 158 1.4E-15 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 SUPERFAMILY SSF47203 288 476 2.26E-46 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Gene3D G3DSA:1.10.540.10 30 160 3.8E-19 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 273 8.2E-18 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_03030 9d0b5f6c6049092426dd03c148107252 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 32 1.5E-13 T 18-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria RU84_16570 190d38d061b797c27392c31cbc25d97b 613 Gene3D G3DSA:1.20.1530.20 1 377 2.2E-85 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_16570 190d38d061b797c27392c31cbc25d97b 613 SUPERFAMILY SSF51735 398 527 8.0E-30 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_16570 190d38d061b797c27392c31cbc25d97b 613 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 12 279 9.1E-79 T 18-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 RU84_16570 190d38d061b797c27392c31cbc25d97b 613 Pfam PF02254 TrkA-N domain 400 512 1.6E-23 T 18-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 RU84_16570 190d38d061b797c27392c31cbc25d97b 613 Pfam PF00999 Sodium/hydrogen exchanger family 9 369 1.6E-68 T 18-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 RU84_16570 190d38d061b797c27392c31cbc25d97b 613 Gene3D G3DSA:3.40.50.720 395 559 8.0E-35 T 18-10-2018 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 Gene3D G3DSA:1.20.140.10 228 405 1.3E-53 T 18-10-2018 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 PIRSF PIRSF016578 4 90 4.8E-7 T 18-10-2018 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 PIRSF PIRSF016578 141 394 1.4E-22 T 18-10-2018 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 SUPERFAMILY SSF47203 238 382 8.19E-13 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 244 382 1.5E-16 T 18-10-2018 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 Gene3D G3DSA:1.10.540.10 13 128 5.8E-18 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 SUPERFAMILY SSF56645 25 227 1.23E-35 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_16395 84589e3dad43bac9508e2bf8ebd1dd3f 416 Gene3D G3DSA:2.40.110.10 129 227 1.2E-26 T 18-10-2018 RU84_17690 8d6e25127cd547bbf44bd7da54dcb016 280 Gene3D G3DSA:3.40.50.300 2 280 6.6E-60 T 18-10-2018 RU84_17690 8d6e25127cd547bbf44bd7da54dcb016 280 SUPERFAMILY SSF52540 3 278 9.69E-50 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17690 8d6e25127cd547bbf44bd7da54dcb016 280 Pfam PF13614 AAA domain 6 206 2.1E-37 T 18-10-2018 IPR025669 AAA domain RU84_12690 85286e734fa76ef8e78ce6234afe3365 102 SUPERFAMILY SSF51278 1 102 1.96E-46 T 18-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12690 85286e734fa76ef8e78ce6234afe3365 102 Gene3D G3DSA:2.10.150.10 1 102 3.9E-47 T 18-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12690 85286e734fa76ef8e78ce6234afe3365 102 Pfam PF00699 Urease beta subunit 3 100 2.1E-44 T 18-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12690 85286e734fa76ef8e78ce6234afe3365 102 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.518 T 18-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_12690 85286e734fa76ef8e78ce6234afe3365 102 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 102 6.9E-46 T 18-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 RU84_18105 36161d05bff9630f48158c1507230e97 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 60 2.6E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18105 36161d05bff9630f48158c1507230e97 212 SUPERFAMILY SSF46689 2 76 2.13E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_18105 36161d05bff9630f48158c1507230e97 212 Gene3D G3DSA:1.10.357.10 53 212 7.0E-38 T 18-10-2018 RU84_18105 36161d05bff9630f48158c1507230e97 212 Gene3D G3DSA:1.10.10.60 1 52 1.4E-25 T 18-10-2018 RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 PIRSF PIRSF004749 1 175 3.6E-58 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 161 1.6E-57 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 Pfam PF01327 Polypeptide deformylase 5 153 1.0E-52 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 PRINTS PR01576 Peptide deformylase signature 102 120 1.2E-37 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 PRINTS PR01576 Peptide deformylase signature 33 62 1.2E-37 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 PRINTS PR01576 Peptide deformylase signature 90 101 1.2E-37 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 PRINTS PR01576 Peptide deformylase signature 121 150 1.2E-37 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 Hamap MF_00163 Peptide deformylase [def]. 2 163 31.537 T 18-10-2018 IPR023635 Peptide deformylase RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 SUPERFAMILY SSF56420 2 165 1.96E-62 T 18-10-2018 IPR036821 Peptide deformylase superfamily RU84_17490 f55f2fee6c7f8540c18593e1e9a4cf07 176 Gene3D G3DSA:3.90.45.10 1 168 4.4E-66 T 18-10-2018 IPR036821 Peptide deformylase superfamily RU84_11050 c744edcbe255a181b172ea5c6b99b645 222 Gene3D G3DSA:3.40.50.150 1 222 5.7E-64 T 18-10-2018 RU84_11050 c744edcbe255a181b172ea5c6b99b645 222 Pfam PF01596 O-methyltransferase 29 185 5.4E-39 T 18-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 RU84_11050 c744edcbe255a181b172ea5c6b99b645 222 SUPERFAMILY SSF53335 4 221 1.6E-36 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_00380 485dab9ccf2a340dd92db052a563c8e1 191 Gene3D G3DSA:2.60.120.10 11 111 3.1E-57 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_00380 485dab9ccf2a340dd92db052a563c8e1 191 SUPERFAMILY SSF51182 1 188 3.56E-54 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_00380 485dab9ccf2a340dd92db052a563c8e1 191 Pfam PF05962 HutD 8 168 4.8E-46 T 18-10-2018 IPR010282 Uncharacterised protein family HutD/Ves RU84_00380 485dab9ccf2a340dd92db052a563c8e1 191 Gene3D G3DSA:2.60.120.10 6 177 3.1E-57 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_06115 f5528f6b56aeff207feeceb8cd4053e3 187 SUPERFAMILY SSF46689 13 69 2.98E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06115 f5528f6b56aeff207feeceb8cd4053e3 187 Gene3D G3DSA:1.10.357.10 7 180 9.8E-20 T 18-10-2018 RU84_06115 f5528f6b56aeff207feeceb8cd4053e3 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 3.8E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06115 f5528f6b56aeff207feeceb8cd4053e3 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.8E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06115 f5528f6b56aeff207feeceb8cd4053e3 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.8E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00450 65feef3655325e08c78aa2e33c27d1ca 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 17 152 5.4E-54 T 18-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00450 65feef3655325e08c78aa2e33c27d1ca 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 11 156 30.988 T 18-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00450 65feef3655325e08c78aa2e33c27d1ca 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 17 153 4.6E-56 T 18-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00450 65feef3655325e08c78aa2e33c27d1ca 156 SUPERFAMILY SSF52121 11 156 2.49E-59 T 18-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_00450 65feef3655325e08c78aa2e33c27d1ca 156 Gene3D G3DSA:3.40.50.960 3 156 1.1E-58 T 18-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_10765 c33e9aa6094b762de14905b4e720c7fa 312 Gene3D G3DSA:1.20.1260.10 2 310 1.2E-136 T 18-10-2018 IPR012347 Ferritin-like RU84_10765 c33e9aa6094b762de14905b4e720c7fa 312 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 8 296 1.3E-157 T 18-10-2018 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149 RU84_10765 c33e9aa6094b762de14905b4e720c7fa 312 SUPERFAMILY SSF47240 28 270 5.81E-85 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_10765 c33e9aa6094b762de14905b4e720c7fa 312 Pfam PF05138 Phenylacetic acid catabolic protein 18 292 2.3E-103 T 18-10-2018 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 Gene3D G3DSA:3.40.1350.30 39 182 3.3E-134 T 18-10-2018 RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 SUPERFAMILY SSF53335 3 360 9.85E-55 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 Gene3D G3DSA:3.40.50.150 7 357 3.3E-134 T 18-10-2018 RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 294 323 - T 18-10-2018 IPR030390 RNA methyltransferase TrmA, active site RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 4 360 2.3E-167 T 18-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 5 360 4.0E-164 T 18-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 343 353 - T 18-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site RU84_09570 69e60b3eaab4d73ceaff56bb18a769eb 361 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 1 361 43.396 T 18-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 RU84_04635 f285528ed213e7c45ed89a43154c8d48 228 Gene3D G3DSA:3.90.1490.10 150 228 1.6E-12 T 18-10-2018 RU84_04635 f285528ed213e7c45ed89a43154c8d48 228 Pfam PF01902 Diphthamide synthase 14 224 3.2E-46 T 18-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 RU84_04635 f285528ed213e7c45ed89a43154c8d48 228 TIGRFAM TIGR00290 MJ0570_dom: MJ0570-related uncharacterized domain 15 225 9.9E-45 T 18-10-2018 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 RU84_04635 f285528ed213e7c45ed89a43154c8d48 228 SUPERFAMILY SSF52402 15 224 6.17E-60 T 18-10-2018 RU84_04635 f285528ed213e7c45ed89a43154c8d48 228 Gene3D G3DSA:3.40.50.620 10 148 8.6E-25 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_11455 43f28f6ed970851dbe22638dee34a0de 268 Gene3D G3DSA:2.60.40.1590 20 110 1.1E-19 T 18-10-2018 RU84_11455 43f28f6ed970851dbe22638dee34a0de 268 Gene3D G3DSA:2.70.70.10 111 267 8.9E-51 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_11455 43f28f6ed970851dbe22638dee34a0de 268 Pfam PF01551 Peptidase family M23 166 260 3.9E-30 T 18-10-2018 IPR016047 Peptidase M23 RU84_11455 43f28f6ed970851dbe22638dee34a0de 268 SUPERFAMILY SSF51261 85 264 3.27E-50 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_13085 378a33ac9acdbe04d2e74224649dc2b9 171 Gene3D G3DSA:3.10.129.10 6 162 1.7E-58 T 18-10-2018 RU84_13085 378a33ac9acdbe04d2e74224649dc2b9 171 SUPERFAMILY SSF54637 9 159 1.08E-45 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_13085 378a33ac9acdbe04d2e74224649dc2b9 171 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 7 102 9.9E-11 T 18-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RU84_13085 378a33ac9acdbe04d2e74224649dc2b9 171 Pfam PF03061 Thioesterase superfamily 32 103 1.8E-18 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_18110 7fcc77b50973c61d3310bc60fa252e37 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 6.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18110 7fcc77b50973c61d3310bc60fa252e37 215 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18110 7fcc77b50973c61d3310bc60fa252e37 215 SUPERFAMILY SSF46689 12 71 9.75E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_18110 7fcc77b50973c61d3310bc60fa252e37 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.1E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18110 7fcc77b50973c61d3310bc60fa252e37 215 Gene3D G3DSA:1.10.357.10 5 170 1.4E-13 T 18-10-2018 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 369 388 - T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 Gene3D G3DSA:1.10.10.1330 115 252 5.8E-21 T 18-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 48 6.8E-14 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 460 467 - T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 PIRSF PIRSF000774 1 481 9.5E-144 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 Pfam PF04552 Sigma-54, DNA binding domain 323 479 7.5E-69 T 18-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 Gene3D G3DSA:1.10.10.60 422 480 1.7E-25 T 18-10-2018 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 PRINTS PR00045 Sigma-54 factor signature 381 393 5.0E-32 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 PRINTS PR00045 Sigma-54 factor signature 192 209 5.0E-32 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 PRINTS PR00045 Sigma-54 factor signature 455 473 5.0E-32 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 PRINTS PR00045 Sigma-54 factor signature 397 408 5.0E-32 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 479 2.2E-153 T 18-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 RU84_15145 c3cd8869a058fcddc648deb7acc5d60b 482 Pfam PF04963 Sigma-54 factor, core binding domain 111 308 1.8E-53 T 18-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 RU84_06135 0173b3f50489dc569c4b285f2056908c 465 PIRSF PIRSF006060 2 463 3.3E-69 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_06135 0173b3f50489dc569c4b285f2056908c 465 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_06135 0173b3f50489dc569c4b285f2056908c 465 Pfam PF00324 Amino acid permease 17 430 4.4E-106 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_06135 0173b3f50489dc569c4b285f2056908c 465 Gene3D G3DSA:1.20.1740.10 11 464 1.2E-61 T 18-10-2018 RU84_18710 fac2ced581cfe3480fe2912216329021 375 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 352 3.1E-89 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_18710 fac2ced581cfe3480fe2912216329021 375 Gene3D G3DSA:3.20.20.70 4 375 4.5E-135 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_18710 fac2ced581cfe3480fe2912216329021 375 SUPERFAMILY SSF51395 2 373 4.58E-121 T 18-10-2018 RU84_11035 fdd7e895130e5dd3773c40a3370bd5ed 191 Pfam PF13673 Acetyltransferase (GNAT) domain 73 170 3.4E-11 T 18-10-2018 IPR000182 GNAT domain RU84_11035 fdd7e895130e5dd3773c40a3370bd5ed 191 Gene3D G3DSA:3.40.630.30 42 175 2.0E-15 T 18-10-2018 RU84_11035 fdd7e895130e5dd3773c40a3370bd5ed 191 SUPERFAMILY SSF55729 52 177 1.75E-17 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 SMART SM01130 10 301 3.4E-75 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 SUPERFAMILY SSF51569 12 300 2.72E-68 T 18-10-2018 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 10 301 43.496 T 18-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 5 298 6.5E-129 T 18-10-2018 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 Pfam PF00701 Dihydrodipicolinate synthetase family 12 298 1.3E-57 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 PIRSF PIRSF001365 6 303 4.2E-62 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 Gene3D G3DSA:3.20.20.70 1 301 3.4E-94 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 80 98 1.0E-5 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 111 127 1.0E-5 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_11725 97d494022155bbafcd5c2fb376b8e209 303 PRINTS PR00146 Dihydrodipicolinate synthase signature 44 65 1.0E-5 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 352 372 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 169 186 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 244 258 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 259 277 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 330 347 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 214 233 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 191 207 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 PRINTS PR01486 Bacterial phospholipase A1 protein signature 294 312 2.5E-38 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 SUPERFAMILY SSF56931 118 382 1.44E-89 T 18-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 Gene3D G3DSA:2.40.230.10 123 383 8.7E-88 T 18-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_07775 60fbac3685d94fc9b43ff85e76ae82d8 383 Pfam PF02253 Phospholipase A1 117 379 5.4E-105 T 18-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 195 1.3E-7 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 12 220 2.1E-61 T 18-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 Gene3D G3DSA:3.40.50.1000 12 216 1.5E-63 T 18-10-2018 IPR023214 HAD superfamily RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 SUPERFAMILY SSF56784 7 220 9.9E-58 T 18-10-2018 IPR036412 HAD-like superfamily RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 195 2.9E-37 T 18-10-2018 RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 99 189 1.3E-10 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_17030 026d0e19d91f59d7840f5ccf5f89429a 222 Gene3D G3DSA:1.10.150.240 24 94 1.5E-63 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 18-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 Gene3D G3DSA:3.90.170.10 268 439 1.5E-61 T 18-10-2018 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 18-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 Gene3D G3DSA:1.10.300.10 102 202 4.7E-98 T 18-10-2018 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 SUPERFAMILY SSF52540 3 437 9.45E-167 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 437 1.1E-169 T 18-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 Pfam PF00709 Adenylosuccinate synthetase 5 431 2.0E-167 T 18-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 SMART SM00788 4 432 3.1E-277 T 18-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 439 203.039 T 18-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 RU84_11490 812f0acee568cc0ea58ac272eb6a690b 439 Gene3D G3DSA:3.40.440.10 6 250 4.7E-98 T 18-10-2018 RU84_11390 dff7a5e54b473c61756f68ea6ed27e4d 812 Pfam PF00932 Lamin Tail Domain 24 129 3.7E-12 T 18-10-2018 IPR001322 Lamin tail domain RU84_11390 dff7a5e54b473c61756f68ea6ed27e4d 812 SUPERFAMILY SSF56219 456 781 8.35E-30 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_11390 dff7a5e54b473c61756f68ea6ed27e4d 812 Gene3D G3DSA:3.60.10.10 464 777 1.7E-37 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 SUPERFAMILY SSF55729 19 183 5.67E-37 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 Pfam PF00765 Autoinducer synthase 18 181 1.2E-26 T 18-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 1.2E-18 T 18-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 PRINTS PR01549 Autoinducer synthesis protein signature 18 37 1.2E-18 T 18-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 PRINTS PR01549 Autoinducer synthesis protein signature 145 166 1.2E-18 T 18-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 PRINTS PR01549 Autoinducer synthesis protein signature 38 60 1.2E-18 T 18-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 PRINTS PR01549 Autoinducer synthesis protein signature 123 144 1.2E-18 T 18-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 RU84_17765 ae60579d1f91b21ac1fc14eb5bfdfaa1 183 Gene3D G3DSA:3.40.630.30 3 183 1.0E-48 T 18-10-2018 RU84_06835 6f3dd565c2be4061d98dde9506035c62 168 Pfam PF17209 Hfq protein 7 68 8.9E-31 T 18-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RU84_06835 6f3dd565c2be4061d98dde9506035c62 168 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.0E-29 T 18-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RU84_06835 6f3dd565c2be4061d98dde9506035c62 168 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.6 T 18-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 RU84_06835 6f3dd565c2be4061d98dde9506035c62 168 Gene3D G3DSA:2.30.30.100 1 69 1.3E-31 T 18-10-2018 RU84_06835 6f3dd565c2be4061d98dde9506035c62 168 SUPERFAMILY SSF50182 7 67 3.07E-23 T 18-10-2018 IPR010920 LSM domain superfamily RU84_02110 5b363985e2c9a4073241c5497f268185 450 Pfam PF00344 SecY translocase 81 423 5.7E-113 T 18-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 121 144 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 28 46 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 376 394 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 80 100 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 321 343 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 408 426 3.1E-92 T 18-10-2018 RU84_02110 5b363985e2c9a4073241c5497f268185 450 SUPERFAMILY SSF103491 9 430 5.36E-127 T 18-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_02110 5b363985e2c9a4073241c5497f268185 450 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 26 435 3.1E-125 T 18-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_02110 5b363985e2c9a4073241c5497f268185 450 ProSitePatterns PS00755 Protein secY signature 1. 81 100 - T 18-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_02110 5b363985e2c9a4073241c5497f268185 450 Gene3D G3DSA:1.10.3370.10 12 435 1.1E-157 T 18-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_02110 5b363985e2c9a4073241c5497f268185 450 Hamap MF_01465 Protein translocase subunit SecY [secY]. 15 439 28.367 T 18-10-2018 IPR026593 Protein translocase subunit SecY RU84_02110 5b363985e2c9a4073241c5497f268185 450 PIRSF PIRSF004557 9 445 9.5E-121 T 18-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 7.6E-122 T 18-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 SMART SM00382 27 214 9.2E-21 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 SUPERFAMILY SSF52540 3 243 8.57E-87 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 Pfam PF12857 TOBE-like domain 287 341 1.7E-7 T 18-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 SUPERFAMILY SSF50331 240 348 6.8E-8 T 18-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 Pfam PF00005 ABC transporter 18 164 8.3E-37 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_04670 1c348883ffdd06ea95caf49ac09f1a7c 353 Gene3D G3DSA:3.40.50.300 2 289 6.1E-82 T 18-10-2018 RU84_17680 9a24e1988f85f4fee4fabbbe01709c57 196 Pfam PF01810 LysE type translocator 13 164 2.5E-6 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_16300 17001696f576915c17368588f55be348 161 Pfam PF00293 NUDIX domain 7 145 4.9E-26 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_16300 17001696f576915c17368588f55be348 161 Gene3D G3DSA:3.90.79.10 1 155 3.1E-46 T 18-10-2018 RU84_16300 17001696f576915c17368588f55be348 161 SUPERFAMILY SSF55811 7 155 8.12E-33 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_16300 17001696f576915c17368588f55be348 161 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.5E-7 T 18-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RU84_16300 17001696f576915c17368588f55be348 161 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.5E-7 T 18-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RU84_16300 17001696f576915c17368588f55be348 161 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_16300 17001696f576915c17368588f55be348 161 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 36.3 T 18-10-2018 IPR022927 RNA pyrophosphohydrolase RppH RU84_05420 0735a5c84e6df777e7e7705de4e6af30 630 Pfam PF13387 Domain of unknown function (DUF4105) 125 294 1.8E-55 T 18-10-2018 IPR025178 Domain of unknown function DUF4105 RU84_07870 fdb3b31c18ca0cb51d6d604051d9a5f3 281 Pfam PF10118 Predicted metal-dependent hydrolase 14 259 6.6E-69 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_07870 fdb3b31c18ca0cb51d6d604051d9a5f3 281 PIRSF PIRSF007580 1 277 2.6E-59 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_18360 4913315fc193c322e93e64ddd459c325 441 SUPERFAMILY SSF51556 75 378 7.21E-105 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_18360 4913315fc193c322e93e64ddd459c325 441 Gene3D G3DSA:2.30.40.10 10 429 2.5E-200 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_18360 4913315fc193c322e93e64ddd459c325 441 Gene3D G3DSA:3.20.20.140 76 393 2.5E-200 T 18-10-2018 RU84_18360 4913315fc193c322e93e64ddd459c325 441 SUPERFAMILY SSF51338 32 90 1.27E-7 T 18-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 RU84_18360 4913315fc193c322e93e64ddd459c325 441 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 32 431 2.6E-193 T 18-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 RU84_18360 4913315fc193c322e93e64ddd459c325 441 Pfam PF01979 Amidohydrolase family 73 432 1.2E-74 T 18-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RU84_02420 de5616fd536f9e84944201b0df3e1006 139 SUPERFAMILY SSF103196 27 135 1.46E-13 T 18-10-2018 RU84_02420 de5616fd536f9e84944201b0df3e1006 139 Gene3D G3DSA:3.30.450.30 22 136 6.3E-16 T 18-10-2018 RU84_02420 de5616fd536f9e84944201b0df3e1006 139 Pfam PF03259 Roadblock/LC7 domain 24 99 4.0E-7 T 18-10-2018 IPR004942 Roadblock/LAMTOR2 domain RU84_00835 69c5414917d10941d50734f832af249d 100 Gene3D G3DSA:1.10.10.10 1 100 4.1E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_00835 69c5414917d10941d50734f832af249d 100 SUPERFAMILY SSF46785 2 98 1.09E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_00835 69c5414917d10941d50734f832af249d 100 Pfam PF12840 Helix-turn-helix domain 4 75 1.2E-14 T 18-10-2018 RU84_00835 69c5414917d10941d50734f832af249d 100 SMART SM00418 5 94 4.4E-6 T 18-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 RU84_09630 34117c8a1dc362f777f86414810a3503 181 Gene3D G3DSA:3.40.630.30 2 181 2.1E-53 T 18-10-2018 RU84_09630 34117c8a1dc362f777f86414810a3503 181 Pfam PF13420 Acetyltransferase (GNAT) domain 21 165 1.5E-19 T 18-10-2018 RU84_09630 34117c8a1dc362f777f86414810a3503 181 SUPERFAMILY SSF55729 17 173 3.32E-31 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_09140 1db71d4175c103e86e448095b91a1603 157 SUPERFAMILY SSF46785 2 132 3.67E-38 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_09140 1db71d4175c103e86e448095b91a1603 157 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 2.9E-46 T 18-10-2018 IPR000944 Transcription regulator Rrf2-type RU84_09140 1db71d4175c103e86e448095b91a1603 157 Pfam PF02082 Transcriptional regulator 1 83 5.4E-31 T 18-10-2018 IPR000944 Transcription regulator Rrf2-type RU84_09140 1db71d4175c103e86e448095b91a1603 157 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 18-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site RU84_09140 1db71d4175c103e86e448095b91a1603 157 Gene3D G3DSA:1.10.10.10 1 144 5.6E-53 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_03660 4a12f49c6568a273b97f1d1e571943f0 451 Pfam PF00324 Amino acid permease 16 420 1.2E-111 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_03660 4a12f49c6568a273b97f1d1e571943f0 451 PIRSF PIRSF006060 2 450 5.0E-81 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_03660 4a12f49c6568a273b97f1d1e571943f0 451 Gene3D G3DSA:1.20.1740.10 8 451 1.9E-68 T 18-10-2018 RU84_03660 4a12f49c6568a273b97f1d1e571943f0 451 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_06365 8494a27a10549d5f6731e62ae0eb8279 348 SUPERFAMILY SSF53335 70 339 6.44E-60 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_06365 8494a27a10549d5f6731e62ae0eb8279 348 Gene3D G3DSA:3.40.50.150 56 341 1.5E-74 T 18-10-2018 RU84_06365 8494a27a10549d5f6731e62ae0eb8279 348 Pfam PF02353 Mycolic acid cyclopropane synthetase 67 330 1.6E-44 T 18-10-2018 RU84_11720 88732b88dc1fb802ff9908b97c51215c 528 Gene3D G3DSA:3.40.605.10 44 521 2.0E-196 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_11720 88732b88dc1fb802ff9908b97c51215c 528 Pfam PF00171 Aldehyde dehydrogenase family 37 467 5.7E-46 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_11720 88732b88dc1fb802ff9908b97c51215c 528 SUPERFAMILY SSF53720 26 521 3.93E-92 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_11720 88732b88dc1fb802ff9908b97c51215c 528 Gene3D G3DSA:3.40.309.10 267 456 2.0E-196 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_08500 b23a61e62f97a7b9083db2c760965b03 528 Pfam PF03321 GH3 auxin-responsive promoter 26 517 7.0E-80 T 18-10-2018 IPR004993 GH3 family Reactome: R-HSA-6798695 RU84_17725 501e64f1ee7fd1ef42fa24c05cb37cc4 424 SUPERFAMILY SSF56935 37 424 1.68E-12 T 18-10-2018 RU84_17050 bc74124a3265c2d9e1d399316af6bf24 247 Pfam PF01203 Type II secretion system (T2SS), protein N 41 211 4.9E-15 T 18-10-2018 IPR022792 Type II secretion system, protein N RU84_06405 083499452d12fa20f1ac4dfdfdd25809 455 SUPERFAMILY SSF50952 62 435 2.48E-38 T 18-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RU84_06405 083499452d12fa20f1ac4dfdfdd25809 455 Gene3D G3DSA:2.120.10.30 159 376 6.4E-17 T 18-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RU84_06405 083499452d12fa20f1ac4dfdfdd25809 455 Pfam PF07995 Glucose / Sorbosone dehydrogenase 169 361 1.2E-15 T 18-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RU84_16020 021c7b6fb2a3d9006876b48da259b75b 72 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 9.3E-19 T 18-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RU84_16020 021c7b6fb2a3d9006876b48da259b75b 72 Pfam PF02416 mttA/Hcf106 family 4 49 4.2E-13 T 18-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 RU84_16020 021c7b6fb2a3d9006876b48da259b75b 72 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 71 20.38 T 18-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 293 3.2E-113 T 18-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 PIRSF PIRSF001365 3 297 4.2E-99 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 Pfam PF00701 Dihydrodipicolinate synthetase family 9 293 4.3E-104 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 SMART SM01130 7 295 4.7E-145 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 139 169 - T 18-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 293 65.772 T 18-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 44 61 - T 18-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 2.8E-37 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 2.8E-37 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 2.8E-37 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 2.8E-37 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 SUPERFAMILY SSF51569 8 295 1.67E-107 T 18-10-2018 RU84_00305 ff1e88d15ff4a3b0efba2e185b703141 297 Gene3D G3DSA:3.20.20.70 7 297 4.6E-127 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_06745 8c72e6d550befbbdc0ee0f8bd9964b34 1501 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1154 1501 3.0E-43 T 18-10-2018 IPR007452 Translocation and assembly module TamB RU84_10230 93d2693471a3e7950b56517c0990b6a9 311 SUPERFAMILY SSF53850 95 304 2.9E-42 T 18-10-2018 RU84_10230 93d2693471a3e7950b56517c0990b6a9 311 Pfam PF03466 LysR substrate binding domain 95 301 2.7E-39 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10230 93d2693471a3e7950b56517c0990b6a9 311 Gene3D G3DSA:1.10.10.10 9 93 6.1E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10230 93d2693471a3e7950b56517c0990b6a9 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.0E-19 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10230 93d2693471a3e7950b56517c0990b6a9 311 Gene3D G3DSA:3.40.190.290 97 301 1.4E-63 T 18-10-2018 RU84_10230 93d2693471a3e7950b56517c0990b6a9 311 SUPERFAMILY SSF46785 10 89 5.18E-20 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_03420 93611d02c08b8b8ee955df0f70e35b64 46 Pfam PF08085 Entericidin EcnA/B family 19 39 6.0E-10 T 18-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 SUPERFAMILY SSF56645 15 246 2.36E-31 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 223 4.0E-10 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 Gene3D G3DSA:2.40.110.10 126 238 1.6E-21 T 18-10-2018 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 Gene3D G3DSA:1.10.540.10 28 123 2.1E-5 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 Gene3D G3DSA:1.20.140.10 239 389 1.3E-17 T 18-10-2018 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 383 7.3E-11 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_17745 6cfb20f6bf2e0ceb0f93946fac2916b8 597 SUPERFAMILY SSF47203 236 384 1.55E-17 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_07570 d825a7afdbc442e35db5a7ba016fa5fc 248 Gene3D G3DSA:3.40.50.1820 24 245 6.5E-42 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07570 d825a7afdbc442e35db5a7ba016fa5fc 248 SUPERFAMILY SSF53474 22 242 2.06E-40 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07570 d825a7afdbc442e35db5a7ba016fa5fc 248 Pfam PF07859 alpha/beta hydrolase fold 59 142 2.2E-9 T 18-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RU84_03480 d6ebb56ee456ef845661e280a96f0a73 191 Pfam PF14317 YcxB-like protein 108 182 1.4E-20 T 18-10-2018 IPR025588 YcxB-like protein RU84_09625 bdaba1bfc10e72037158235143f135d6 274 SUPERFAMILY SSF56601 49 260 1.57E-30 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_09625 bdaba1bfc10e72037158235143f135d6 274 Gene3D G3DSA:3.40.710.10 25 274 1.3E-90 T 18-10-2018 RU84_09625 bdaba1bfc10e72037158235143f135d6 274 Pfam PF00905 Penicillin binding protein transpeptidase domain 47 268 2.1E-28 T 18-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 RU84_15580 7d21773af97de4a515927f9de9a8814b 571 Pfam PF00394 Multicopper oxidase 145 303 1.9E-26 T 18-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 RU84_15580 7d21773af97de4a515927f9de9a8814b 571 SUPERFAMILY SSF49503 142 346 1.25E-43 T 18-10-2018 IPR008972 Cupredoxin RU84_15580 7d21773af97de4a515927f9de9a8814b 571 ProSitePatterns PS00079 Multicopper oxidases signature 1. 519 539 - T 18-10-2018 IPR033138 Multicopper oxidases, conserved site RU84_15580 7d21773af97de4a515927f9de9a8814b 571 SUPERFAMILY SSF49503 392 541 1.58E-36 T 18-10-2018 IPR008972 Cupredoxin RU84_15580 7d21773af97de4a515927f9de9a8814b 571 Gene3D G3DSA:2.60.40.420 408 555 1.7E-33 T 18-10-2018 IPR008972 Cupredoxin RU84_15580 7d21773af97de4a515927f9de9a8814b 571 SUPERFAMILY SSF49503 7 160 1.56E-34 T 18-10-2018 IPR008972 Cupredoxin RU84_15580 7d21773af97de4a515927f9de9a8814b 571 Gene3D G3DSA:2.60.40.420 2 130 1.0E-37 T 18-10-2018 IPR008972 Cupredoxin RU84_15580 7d21773af97de4a515927f9de9a8814b 571 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 11 541 5.2E-190 T 18-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 RU84_15580 7d21773af97de4a515927f9de9a8814b 571 Gene3D G3DSA:2.60.40.420 143 354 4.4E-39 T 18-10-2018 IPR008972 Cupredoxin RU84_15580 7d21773af97de4a515927f9de9a8814b 571 ProSitePatterns PS00080 Multicopper oxidases signature 2. 524 535 - T 18-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 RU84_15580 7d21773af97de4a515927f9de9a8814b 571 Pfam PF07732 Multicopper oxidase 18 132 7.5E-35 T 18-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RU84_15580 7d21773af97de4a515927f9de9a8814b 571 Pfam PF07731 Multicopper oxidase 431 543 2.0E-27 T 18-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RU84_10760 f58a9304ced3936f3f8336cc361e9b2d 96 PIRSF PIRSF030200 1 96 4.0E-42 T 18-10-2018 IPR009359 Phenylacetic acid degradation B RU84_10760 f58a9304ced3936f3f8336cc361e9b2d 96 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 7 96 1.9E-45 T 18-10-2018 IPR009359 Phenylacetic acid degradation B RU84_10760 f58a9304ced3936f3f8336cc361e9b2d 96 Pfam PF06243 Phenylacetic acid degradation B 6 92 1.3E-37 T 18-10-2018 IPR009359 Phenylacetic acid degradation B RU84_10760 f58a9304ced3936f3f8336cc361e9b2d 96 Gene3D G3DSA:3.10.20.520 2 66 1.8E-29 T 18-10-2018 IPR038693 Phenylacetyl-CoA epoxidase, subunit B RU84_15040 c59f74de12bf8711eb3765f99a306698 282 Gene3D G3DSA:3.40.50.1820 1 279 2.7E-87 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_15040 c59f74de12bf8711eb3765f99a306698 282 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 3 275 2.5E-119 T 18-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 RU84_15040 c59f74de12bf8711eb3765f99a306698 282 SUPERFAMILY SSF53474 1 273 2.09E-78 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_15040 c59f74de12bf8711eb3765f99a306698 282 Pfam PF00756 Putative esterase 21 270 6.1E-52 T 18-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RU84_09280 e8f9b830437c6c0a32ef910fd2b08c02 292 Pfam PF01618 MotA/TolQ/ExbB proton channel family 163 265 1.5E-34 T 18-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RU84_05675 1616369e093813b486346ee2c4cc337c 380 Pfam PF01098 Cell cycle protein 37 379 6.5E-103 T 18-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05675 1616369e093813b486346ee2c4cc337c 380 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 33 380 1.6E-126 T 18-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05675 1616369e093813b486346ee2c4cc337c 380 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 27 380 26.98 T 18-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_05675 1616369e093813b486346ee2c4cc337c 380 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 338 362 - T 18-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 RU84_14115 b86b2d915deff80a9785b89422ff16fb 557 Gene3D G3DSA:3.40.50.300 56 248 4.1E-19 T 18-10-2018 RU84_14115 b86b2d915deff80a9785b89422ff16fb 557 Pfam PF03354 Phage Terminase 70 321 2.8E-18 T 18-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type RU84_11345 80db3f2719d1a09e376812016f459420 368 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 275 364 1.1E-20 T 18-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RU84_11345 80db3f2719d1a09e376812016f459420 368 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 149 226 1.0E-19 T 18-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 RU84_11345 80db3f2719d1a09e376812016f459420 368 Gene3D G3DSA:3.40.47.10 2 211 4.9E-55 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_11345 80db3f2719d1a09e376812016f459420 368 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 146 162 - T 18-10-2018 IPR018201 Beta-ketoacyl synthase, active site RU84_11345 80db3f2719d1a09e376812016f459420 368 SUPERFAMILY SSF53901 2 364 1.27E-49 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_11345 80db3f2719d1a09e376812016f459420 368 Gene3D G3DSA:3.40.47.10 213 366 8.6E-38 T 18-10-2018 IPR016039 Thiolase-like GO:0003824 RU84_18515 6e62f3516d7cf6392664bf4f32c46e20 191 Pfam PF07463 NUMOD4 motif 2 58 7.2E-16 T 18-10-2018 IPR010902 NUMOD4 GO:0016788 RU84_18515 6e62f3516d7cf6392664bf4f32c46e20 191 SUPERFAMILY SSF54060 2 118 3.3E-26 T 18-10-2018 RU84_18515 6e62f3516d7cf6392664bf4f32c46e20 191 Pfam PF13392 HNH endonuclease 70 112 1.2E-11 T 18-10-2018 IPR003615 HNH nuclease RU84_18515 6e62f3516d7cf6392664bf4f32c46e20 191 Gene3D G3DSA:3.90.75.20 2 120 5.3E-31 T 18-10-2018 RU84_17760 e3efc36ba9d0bd48fa01360fc2e383b0 121 Gene3D G3DSA:3.10.450.610 1 119 7.9E-27 T 18-10-2018 RU84_17760 e3efc36ba9d0bd48fa01360fc2e383b0 121 Pfam PF16245 Domain of unknown function (DUF4902) 1 103 9.3E-20 T 18-10-2018 IPR032598 Protein of unknown function DUF4902 RU84_01540 b6d071eb737a56f888b6715b22e46c07 92 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.307 T 18-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_01540 b6d071eb737a56f888b6715b22e46c07 92 Pfam PF01192 RNA polymerase Rpb6 8 59 4.8E-17 T 18-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RU84_01540 b6d071eb737a56f888b6715b22e46c07 92 Gene3D G3DSA:3.90.940.10 1 84 1.8E-27 T 18-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RU84_01540 b6d071eb737a56f888b6715b22e46c07 92 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 7.7E-22 T 18-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 RU84_01540 b6d071eb737a56f888b6715b22e46c07 92 SUPERFAMILY SSF63562 1 70 1.34E-25 T 18-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RU84_01540 b6d071eb737a56f888b6715b22e46c07 92 SMART SM01409 8 61 4.3E-17 T 18-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 RU84_08155 31865ffce852585c587038ef73980c63 577 SUPERFAMILY SSF52016 378 564 1.88E-55 T 18-10-2018 RU84_08155 31865ffce852585c587038ef73980c63 577 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 123 133 - T 18-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_08155 31865ffce852585c587038ef73980c63 577 Pfam PF00920 Dehydratase family 40 559 9.7E-176 T 18-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_08155 31865ffce852585c587038ef73980c63 577 Gene3D G3DSA:3.50.30.80 378 532 1.2E-46 T 18-10-2018 RU84_08155 31865ffce852585c587038ef73980c63 577 SUPERFAMILY SSF143975 6 377 3.14E-123 T 18-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 RU84_03310 f6c10fe36afb63649f42f6d46a4df5a4 369 Gene3D G3DSA:3.20.20.70 1 358 7.0E-118 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_03310 f6c10fe36afb63649f42f6d46a4df5a4 369 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 3 340 1.1E-71 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_03310 f6c10fe36afb63649f42f6d46a4df5a4 369 SUPERFAMILY SSF51395 1 360 1.95E-109 T 18-10-2018 RU84_18790 2827c49ed683262713eb2024929b3215 82 Gene3D G3DSA:1.10.260.40 13 72 2.0E-5 T 18-10-2018 RU84_01265 717f1ef4d7399a3b3e2f30142e385143 729 SMART SM00947 558 728 4.4E-48 T 18-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RU84_01265 717f1ef4d7399a3b3e2f30142e385143 729 Gene3D G3DSA:3.40.1050.10 514 729 1.3E-54 T 18-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RU84_01265 717f1ef4d7399a3b3e2f30142e385143 729 Pfam PF00916 Sulfate permease family 13 373 2.0E-55 T 18-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 RU84_01265 717f1ef4d7399a3b3e2f30142e385143 729 SUPERFAMILY SSF53056 506 728 4.71E-52 T 18-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 RU84_01265 717f1ef4d7399a3b3e2f30142e385143 729 Pfam PF00484 Carbonic anhydrase 566 724 1.2E-33 T 18-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 RU84_17465 72994dce9b9575e4a3f7ede0a4f96d4e 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 4.7E-14 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17465 72994dce9b9575e4a3f7ede0a4f96d4e 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 60 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_17465 72994dce9b9575e4a3f7ede0a4f96d4e 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 2.3E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17465 72994dce9b9575e4a3f7ede0a4f96d4e 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 2.3E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_17465 72994dce9b9575e4a3f7ede0a4f96d4e 198 SUPERFAMILY SSF46689 2 82 2.44E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_17465 72994dce9b9575e4a3f7ede0a4f96d4e 198 Gene3D G3DSA:1.10.357.10 13 198 5.5E-24 T 18-10-2018 RU84_12255 2fccf3cb12656cf1fa125b12825c2c21 166 Gene3D G3DSA:2.10.109.10 48 163 1.4E-41 T 18-10-2018 RU84_12255 2fccf3cb12656cf1fa125b12825c2c21 166 Pfam PF00717 Peptidase S24-like 78 143 8.2E-14 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_12255 2fccf3cb12656cf1fa125b12825c2c21 166 SUPERFAMILY SSF51306 37 159 4.01E-30 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_08390 5aeee71fd926d280f199cd738e6fce8f 525 Pfam PF00171 Aldehyde dehydrogenase family 18 457 2.1E-49 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_08390 5aeee71fd926d280f199cd738e6fce8f 525 Gene3D G3DSA:3.40.309.10 266 453 6.5E-203 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_08390 5aeee71fd926d280f199cd738e6fce8f 525 Gene3D G3DSA:3.40.605.10 43 518 6.5E-203 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_08390 5aeee71fd926d280f199cd738e6fce8f 525 SUPERFAMILY SSF53720 21 517 1.44E-102 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_03200 1bebb03e7c57b1b2a67d3c5318f871b3 372 SUPERFAMILY SSF89796 3 370 5.49E-109 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_03200 1bebb03e7c57b1b2a67d3c5318f871b3 372 Gene3D G3DSA:3.30.1540.10 226 314 2.6E-108 T 18-10-2018 RU84_03200 1bebb03e7c57b1b2a67d3c5318f871b3 372 Gene3D G3DSA:3.40.50.10540 5 333 2.6E-108 T 18-10-2018 IPR023606 CoA-transferase family III domain superfamily RU84_03200 1bebb03e7c57b1b2a67d3c5318f871b3 372 Pfam PF02515 CoA-transferase family III 5 361 3.5E-96 T 18-10-2018 IPR003673 CoA-transferase family III GO:0003824 RU84_03110 c4ad0511fb825461bd84cee62c983a7d 267 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 18-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_03110 c4ad0511fb825461bd84cee62c983a7d 267 Pfam PF00290 Tryptophan synthase alpha chain 8 260 2.0E-87 T 18-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_03110 c4ad0511fb825461bd84cee62c983a7d 267 Gene3D G3DSA:3.20.20.70 1 267 6.3E-100 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_03110 c4ad0511fb825461bd84cee62c983a7d 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 262 34.147 T 18-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_03110 c4ad0511fb825461bd84cee62c983a7d 267 SUPERFAMILY SSF51366 1 245 4.52E-90 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_03110 c4ad0511fb825461bd84cee62c983a7d 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 259 1.5E-76 T 18-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 RU84_05495 726ad52bb7f1b68c37dcf7c45de5fadf 169 SUPERFAMILY SSF64288 10 158 4.87E-38 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_05495 726ad52bb7f1b68c37dcf7c45de5fadf 169 Pfam PF04345 Chorismate lyase 13 153 3.4E-19 T 18-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 RU84_05495 726ad52bb7f1b68c37dcf7c45de5fadf 169 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 1 159 21.88 T 18-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 RU84_05495 726ad52bb7f1b68c37dcf7c45de5fadf 169 Gene3D G3DSA:3.40.1410.10 2 159 1.5E-35 T 18-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily RU84_06120 f9dd1acbe786bddf552de0378bc53ed8 305 SUPERFAMILY SSF53850 101 303 2.35E-20 T 18-10-2018 RU84_06120 f9dd1acbe786bddf552de0378bc53ed8 305 Gene3D G3DSA:3.40.190.290 103 305 4.2E-13 T 18-10-2018 RU84_06120 f9dd1acbe786bddf552de0378bc53ed8 305 SUPERFAMILY SSF46785 13 98 1.25E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06120 f9dd1acbe786bddf552de0378bc53ed8 305 Pfam PF03466 LysR substrate binding domain 99 301 9.2E-19 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_06120 f9dd1acbe786bddf552de0378bc53ed8 305 Gene3D G3DSA:1.10.10.10 12 102 1.6E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06120 f9dd1acbe786bddf552de0378bc53ed8 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 73 1.1E-13 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_04740 575683e0cd28f10be595fc3c819f25bb 124 Pfam PF16137 Domain of unknown function (DUF4845) 30 112 2.2E-15 T 18-10-2018 IPR032314 Protein of unknown function DUF4845 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 222 246 3.0E-9 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 92 108 3.0E-9 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 3.0E-9 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 3.0E-9 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 Gene3D G3DSA:3.40.190.80 162 270 4.4E-26 T 18-10-2018 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 Gene3D G3DSA:3.30.540.10 10 159 1.4E-32 T 18-10-2018 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 92 105 - T 18-10-2018 IPR020583 Inositol monophosphatase, metal-binding site RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 SUPERFAMILY SSF56655 11 278 1.7E-57 T 18-10-2018 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 12 267 35.396 T 18-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 RU84_09225 d1a941bf5e4b05f893c6e4a906f8895a 285 Pfam PF00459 Inositol monophosphatase family 18 259 1.1E-37 T 18-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 RU84_05870 b9f82ff5bd22cbeea54c2418bdcbf78d 292 Gene3D G3DSA:3.40.50.1820 9 284 1.1E-70 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05870 b9f82ff5bd22cbeea54c2418bdcbf78d 292 SUPERFAMILY SSF53474 15 270 8.11E-57 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05870 b9f82ff5bd22cbeea54c2418bdcbf78d 292 Pfam PF00756 Putative esterase 25 205 2.0E-24 T 18-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RU84_03725 1b5588f291c71c51a9a551e02320d2d3 232 SUPERFAMILY SSF48317 10 223 7.03E-12 T 18-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RU84_03725 1b5588f291c71c51a9a551e02320d2d3 232 Pfam PF01569 PAP2 superfamily 99 215 7.2E-8 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_03050 39d3d9f33c5a9c62482ae1ebd4a7cd37 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 4 446 1.0E-117 T 18-10-2018 IPR003846 Uncharacterised protein family UPF0061 RU84_04885 ee3c3a717efbcb555ffb798ee74ade6b 348 Pfam PF03060 Nitronate monooxygenase 5 342 2.0E-68 T 18-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 RU84_04885 ee3c3a717efbcb555ffb798ee74ade6b 348 Gene3D G3DSA:3.20.20.70 1 345 5.8E-99 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_04885 ee3c3a717efbcb555ffb798ee74ade6b 348 SUPERFAMILY SSF51412 3 341 2.9E-56 T 18-10-2018 RU84_05165 41dca4223d3bdb05c735f534d77352ed 162 Gene3D G3DSA:3.90.79.10 1 151 3.7E-38 T 18-10-2018 RU84_05165 41dca4223d3bdb05c735f534d77352ed 162 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_05165 41dca4223d3bdb05c735f534d77352ed 162 Pfam PF00293 NUDIX domain 7 127 5.6E-16 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_05165 41dca4223d3bdb05c735f534d77352ed 162 SUPERFAMILY SSF55811 3 146 2.71E-30 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 138 226 1.1E-27 T 18-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 Gene3D G3DSA:3.10.50.40 123 230 1.5E-42 T 18-10-2018 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 PRINTS PR01730 Macrophage infectivity potentiator signature 73 87 2.0E-5 T 18-10-2018 IPR008104 Macrophage infectivity potentiator GO:0003755|GO:0016020 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 PRINTS PR01730 Macrophage infectivity potentiator signature 24 38 2.0E-5 T 18-10-2018 IPR008104 Macrophage infectivity potentiator GO:0003755|GO:0016020 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 PRINTS PR01730 Macrophage infectivity potentiator signature 91 110 2.0E-5 T 18-10-2018 IPR008104 Macrophage infectivity potentiator GO:0003755|GO:0016020 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 28 131 4.6E-28 T 18-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 Gene3D G3DSA:1.10.287.460 23 122 1.7E-25 T 18-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 RU84_18060 6a1e00ea10025e1901e4d8de86059a9c 231 SUPERFAMILY SSF54534 31 229 6.48E-61 T 18-10-2018 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 Gene3D G3DSA:3.10.20.30 265 356 2.3E-13 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 PRINTS PR00406 Cytochrome B5 reductase signature 232 240 1.1E-5 T 18-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 PRINTS PR00406 Cytochrome B5 reductase signature 144 163 1.1E-5 T 18-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 PRINTS PR00406 Cytochrome B5 reductase signature 122 136 1.1E-5 T 18-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 Pfam PF00970 Oxidoreductase FAD-binding domain 43 134 9.4E-9 T 18-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 SUPERFAMILY SSF63380 31 134 1.7E-17 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 SUPERFAMILY SSF54292 256 356 2.23E-14 T 18-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 Gene3D G3DSA:3.40.50.80 136 264 1.6E-24 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 Pfam PF00175 Oxidoreductase NAD-binding domain 145 246 9.0E-14 T 18-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 SUPERFAMILY SSF52343 130 251 1.57E-24 T 18-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain RU84_05060 00e6d6cb0f9bb7b9d61249000a2201b3 356 Gene3D G3DSA:2.40.30.10 35 135 1.0E-14 T 18-10-2018 RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 Gene3D G3DSA:3.90.1150.10 43 450 1.0E-151 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 266 303 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 SUPERFAMILY SSF53383 29 454 2.2E-114 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 PIRSF PIRSF000521 47 156 0.0065 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 PIRSF PIRSF000521 205 457 7.2E-20 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 Gene3D G3DSA:3.40.640.10 79 361 1.0E-151 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_06125 2ff23b951e76d2d3aacdd1b643b9c42f 458 Pfam PF00202 Aminotransferase class-III 45 454 9.2E-86 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_13755 a120e0743f77bdbabd4cf4fcfc6d45d7 151 Pfam PF01814 Hemerythrin HHE cation binding domain 12 124 1.1E-8 T 18-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RU84_13755 a120e0743f77bdbabd4cf4fcfc6d45d7 151 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 123 4.8E-30 T 18-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 RU84_13755 a120e0743f77bdbabd4cf4fcfc6d45d7 151 Gene3D G3DSA:1.20.120.50 1 127 6.2E-31 T 18-10-2018 IPR035938 Hemerythrin-like superfamily RU84_13755 a120e0743f77bdbabd4cf4fcfc6d45d7 151 SUPERFAMILY SSF47188 2 124 1.44E-27 T 18-10-2018 IPR035938 Hemerythrin-like superfamily RU84_01795 7f08622aa6e910e3ef4bface97895d7e 94 Pfam PF03795 YCII-related domain 1 74 6.1E-11 T 18-10-2018 IPR005545 YCII-related RU84_01795 7f08622aa6e910e3ef4bface97895d7e 94 SUPERFAMILY SSF54909 3 81 1.26E-13 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_05070 ad9e368908de65cf2d6cc1d86f739f03 191 Pfam PF02525 Flavodoxin-like fold 3 168 5.8E-34 T 18-10-2018 IPR003680 Flavodoxin-like fold RU84_05070 ad9e368908de65cf2d6cc1d86f739f03 191 Gene3D G3DSA:3.40.50.360 3 177 6.4E-38 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_05070 ad9e368908de65cf2d6cc1d86f739f03 191 SUPERFAMILY SSF52218 1 177 3.49E-31 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_12355 ae4dcf935b2eb9259535ffe38812abe1 132 Pfam PF13554 Bacteriophage related domain of unknown function 9 97 1.3E-7 T 18-10-2018 IPR025395 Protein of unknown function DUF4128 RU84_00495 33f3cdc09b8018fe4a3e007d16fe88c5 283 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 16 283 42.61 T 18-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 RU84_00495 33f3cdc09b8018fe4a3e007d16fe88c5 283 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 56 280 8.8E-68 T 18-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RU84_00495 33f3cdc09b8018fe4a3e007d16fe88c5 283 Pfam PF02666 Phosphatidylserine decarboxylase 69 280 2.0E-59 T 18-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 RU84_09255 2fd8513d7db108a672945c333e732f77 670 SUPERFAMILY SSF55486 34 662 1.18E-137 T 18-10-2018 RU84_09255 2fd8513d7db108a672945c333e732f77 670 Gene3D G3DSA:1.10.1370.10 153 599 1.8E-169 T 18-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RU84_09255 2fd8513d7db108a672945c333e732f77 670 Pfam PF01432 Peptidase family M3 229 663 4.8E-106 T 18-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RU84_09255 2fd8513d7db108a672945c333e732f77 670 Gene3D G3DSA:1.10.1370.40 65 661 1.8E-169 T 18-10-2018 RU84_12320 fa0e24285b2629a75662bfb1aceec0aa 134 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 126 1.4E-46 T 18-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system RU84_12320 fa0e24285b2629a75662bfb1aceec0aa 134 SUPERFAMILY SSF143100 1 63 1.83E-20 T 18-10-2018 IPR035069 TTHA1013/TTHA0281-like RU84_12320 fa0e24285b2629a75662bfb1aceec0aa 134 Gene3D G3DSA:3.30.160.250 1 85 1.1E-26 T 18-10-2018 RU84_17715 0a54bd0dd29fa8f1f346dfa09e412f76 254 SUPERFAMILY SSF56214 110 226 3.84E-18 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_17715 0a54bd0dd29fa8f1f346dfa09e412f76 254 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 111 206 1.3E-13 T 18-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_17715 0a54bd0dd29fa8f1f346dfa09e412f76 254 Gene3D G3DSA:3.90.470.20 25 231 1.8E-41 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_17715 0a54bd0dd29fa8f1f346dfa09e412f76 254 Gene3D G3DSA:3.90.470.20 111 221 1.8E-41 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_17715 0a54bd0dd29fa8f1f346dfa09e412f76 254 SUPERFAMILY SSF56214 9 102 8.89E-17 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 Pfam PF00742 Homoserine dehydrogenase 149 325 2.4E-43 T 18-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 140 3.4E-11 T 18-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 Gene3D G3DSA:3.30.360.10 149 311 1.3E-76 T 18-10-2018 RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 SUPERFAMILY SSF55347 149 310 5.23E-35 T 18-10-2018 RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 SUPERFAMILY SSF51735 1 170 4.07E-18 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 Gene3D G3DSA:3.40.50.720 6 319 1.3E-76 T 18-10-2018 RU84_08745 37c1b9c27236d9c912cd406fe3c35ca8 334 PIRSF PIRSF036497 1 332 8.5E-72 T 18-10-2018 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 RU84_18825 9a533538abeea60e0624deed99eac129 189 SMART SM00257 26 70 4.1E-8 T 18-10-2018 IPR018392 LysM domain RU84_18825 9a533538abeea60e0624deed99eac129 189 SUPERFAMILY SSF54106 26 69 3.92E-9 T 18-10-2018 RU84_18825 9a533538abeea60e0624deed99eac129 189 Pfam PF01476 LysM domain 27 69 9.2E-12 T 18-10-2018 IPR018392 LysM domain RU84_18825 9a533538abeea60e0624deed99eac129 189 Gene3D G3DSA:3.10.350.10 13 83 1.0E-13 T 18-10-2018 IPR036779 LysM domain superfamily RU84_03560 1a4973d11d6451a0b790cde9c3c1dc52 104 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 28 99 6.8E-17 T 18-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RU84_03560 1a4973d11d6451a0b790cde9c3c1dc52 104 Gene3D G3DSA:1.10.20.60 9 102 1.5E-21 T 18-10-2018 RU84_03560 1a4973d11d6451a0b790cde9c3c1dc52 104 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 13 104 7.8E-28 T 18-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RU84_03560 1a4973d11d6451a0b790cde9c3c1dc52 104 SUPERFAMILY SSF141000 12 102 3.4E-27 T 18-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 RU84_03560 1a4973d11d6451a0b790cde9c3c1dc52 104 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 11 104 22.367 T 18-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 RU84_04260 3985e6ec4e2cf5c0a194c37cf02a4420 192 SUPERFAMILY SSF46689 13 69 2.41E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_04260 3985e6ec4e2cf5c0a194c37cf02a4420 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04260 3985e6ec4e2cf5c0a194c37cf02a4420 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04260 3985e6ec4e2cf5c0a194c37cf02a4420 192 Gene3D G3DSA:1.10.357.10 7 179 4.9E-20 T 18-10-2018 RU84_04260 3985e6ec4e2cf5c0a194c37cf02a4420 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 2.5E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14635 035ed0c8e244431c87c208d89569984d 409 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 150 391 1.2E-96 T 18-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 RU84_14635 035ed0c8e244431c87c208d89569984d 409 ProSitePatterns PS01215 Mrp family signature. 257 273 - T 18-10-2018 IPR000808 Mrp, conserved site GO:0005524 RU84_14635 035ed0c8e244431c87c208d89569984d 409 Gene3D G3DSA:3.40.50.300 146 389 4.2E-80 T 18-10-2018 RU84_14635 035ed0c8e244431c87c208d89569984d 409 SUPERFAMILY SSF52540 143 374 1.6E-56 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_14635 035ed0c8e244431c87c208d89569984d 409 Hamap MF_02040 Iron-sulfur cluster carrier protein. 144 403 36.263 T 18-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein RU84_00445 cddf5644c2b9760b29f96605f6014ae0 149 SUPERFAMILY SSF48013 10 141 3.01E-37 T 18-10-2018 IPR035926 NusB-like superfamily RU84_00445 cddf5644c2b9760b29f96605f6014ae0 149 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 10 141 20.952 T 18-10-2018 IPR011605 NusB antitermination factor GO:0006353 RU84_00445 cddf5644c2b9760b29f96605f6014ae0 149 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 12 138 4.9E-39 T 18-10-2018 IPR011605 NusB antitermination factor GO:0006353 RU84_00445 cddf5644c2b9760b29f96605f6014ae0 149 Gene3D G3DSA:1.10.940.10 6 145 8.9E-45 T 18-10-2018 IPR035926 NusB-like superfamily RU84_00445 cddf5644c2b9760b29f96605f6014ae0 149 Pfam PF01029 NusB family 13 136 5.2E-29 T 18-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 RU84_14360 5ae9d7af498f3f76238074aedb589d96 192 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 34 191 3.4E-30 T 18-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 RU84_14360 5ae9d7af498f3f76238074aedb589d96 192 Pfam PF03550 Outer membrane lipoprotein LolB 41 191 7.3E-39 T 18-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 RU84_14360 5ae9d7af498f3f76238074aedb589d96 192 Gene3D G3DSA:2.50.20.10 25 191 5.3E-35 T 18-10-2018 RU84_14360 5ae9d7af498f3f76238074aedb589d96 192 SUPERFAMILY SSF89392 21 191 2.24E-34 T 18-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX RU84_18375 9a58ceb378ce6f912967aa51eaa3ffdc 83 Pfam PF04226 Transglycosylase associated protein 34 81 5.7E-13 T 18-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 RU84_11355 ac6dfa1aa0729fd24450a40a01f5d3ab 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 7.4E-105 T 18-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 RU84_11355 ac6dfa1aa0729fd24450a40a01f5d3ab 187 Gene3D G3DSA:3.40.30.10 1 186 3.3E-65 T 18-10-2018 RU84_11355 ac6dfa1aa0729fd24450a40a01f5d3ab 187 SUPERFAMILY SSF52833 1 186 2.87E-59 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_11355 ac6dfa1aa0729fd24450a40a01f5d3ab 187 PIRSF PIRSF000239 1 187 1.5E-55 T 18-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_11355 ac6dfa1aa0729fd24450a40a01f5d3ab 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 4.9E-6 T 18-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_11355 ac6dfa1aa0729fd24450a40a01f5d3ab 187 Pfam PF00578 AhpC/TSA family 5 132 2.5E-35 T 18-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 RU84_05910 1203bf0c46225749cbf32968463884aa 207 SUPERFAMILY SSF109604 23 205 5.83E-26 T 18-10-2018 RU84_05910 1203bf0c46225749cbf32968463884aa 207 Gene3D G3DSA:1.10.3210.10 21 181 3.2E-7 T 18-10-2018 RU84_05910 1203bf0c46225749cbf32968463884aa 207 PIRSF PIRSF035170 16 207 1.3E-46 T 18-10-2018 IPR009218 Predicted HD phosphohydrolase RU84_04710 7c1bea3577a978d037c3cd92500cb542 138 Pfam PF03061 Thioesterase superfamily 47 122 4.4E-10 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_04710 7c1bea3577a978d037c3cd92500cb542 138 SUPERFAMILY SSF54637 22 135 3.32E-23 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_04710 7c1bea3577a978d037c3cd92500cb542 138 Gene3D G3DSA:3.10.129.10 4 137 3.2E-50 T 18-10-2018 RU84_00535 f85c5efa10ed479996902a97a53626b8 277 Gene3D G3DSA:3.40.50.720 1 275 3.1E-68 T 18-10-2018 RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.5E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 1.5E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.5E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 1.5E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.5E-21 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.2E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.2E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.2E-10 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 Pfam PF00106 short chain dehydrogenase 7 199 7.5E-45 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_00535 f85c5efa10ed479996902a97a53626b8 277 SUPERFAMILY SSF51735 1 271 1.38E-62 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_18335 f372ce445e576044ecf94b74a0e99ffc 198 SMART SM00014 58 166 2.0E-12 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_18335 f372ce445e576044ecf94b74a0e99ffc 198 SUPERFAMILY SSF48317 5 172 3.14E-26 T 18-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily RU84_18335 f372ce445e576044ecf94b74a0e99ffc 198 Gene3D G3DSA:1.20.144.10 89 182 6.9E-15 T 18-10-2018 RU84_18335 f372ce445e576044ecf94b74a0e99ffc 198 Pfam PF01569 PAP2 superfamily 62 169 7.2E-12 T 18-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase RU84_06145 e9a03507e977f5a233ba56a4cefb74a7 329 SUPERFAMILY SSF56645 44 175 2.96E-7 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_06145 e9a03507e977f5a233ba56a4cefb74a7 329 Gene3D G3DSA:2.40.110.10 102 180 4.9E-8 T 18-10-2018 RU84_10185 603596d1234287793ef6132a19fde534 286 Pfam PF00043 Glutathione S-transferase, C-terminal domain 178 246 1.3E-10 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_10185 603596d1234287793ef6132a19fde534 286 SUPERFAMILY SSF52833 32 126 9.26E-17 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_10185 603596d1234287793ef6132a19fde534 286 Gene3D G3DSA:3.40.30.10 17 251 5.9E-110 T 18-10-2018 RU84_10185 603596d1234287793ef6132a19fde534 286 Gene3D G3DSA:1.20.1050.10 129 245 5.9E-110 T 18-10-2018 RU84_10185 603596d1234287793ef6132a19fde534 286 SUPERFAMILY SSF47616 113 255 1.39E-34 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_10185 603596d1234287793ef6132a19fde534 286 Pfam PF02798 Glutathione S-transferase, N-terminal domain 43 123 1.4E-7 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_14925 f5417b73a3740fb37c19adbd82dc2bcf 177 Pfam PF04982 HPP family 46 166 3.1E-39 T 18-10-2018 IPR007065 HPP RU84_16005 b03534b59c999de6870186d4aa8566ac 195 Gene3D G3DSA:1.25.40.10 14 195 2.3E-38 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_16005 b03534b59c999de6870186d4aa8566ac 195 Pfam PF08238 Sel1 repeat 89 124 6.1E-9 T 18-10-2018 IPR006597 Sel1-like repeat RU84_16005 b03534b59c999de6870186d4aa8566ac 195 Pfam PF08238 Sel1 repeat 127 152 10.0 T 18-10-2018 IPR006597 Sel1-like repeat RU84_16005 b03534b59c999de6870186d4aa8566ac 195 Pfam PF08238 Sel1 repeat 54 87 3.8E-7 T 18-10-2018 IPR006597 Sel1-like repeat RU84_16005 b03534b59c999de6870186d4aa8566ac 195 SMART SM00671 53 88 7.3E-9 T 18-10-2018 IPR006597 Sel1-like repeat RU84_16005 b03534b59c999de6870186d4aa8566ac 195 SMART SM00671 89 124 4.3E-10 T 18-10-2018 IPR006597 Sel1-like repeat RU84_16005 b03534b59c999de6870186d4aa8566ac 195 SMART SM00671 125 156 190.0 T 18-10-2018 IPR006597 Sel1-like repeat RU84_16005 b03534b59c999de6870186d4aa8566ac 195 SUPERFAMILY SSF81901 41 152 9.94E-29 T 18-10-2018 RU84_14930 e4824f926c4a5e3397c8af864a90ac9f 183 SUPERFAMILY SSF48498 74 159 6.99E-8 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_14930 e4824f926c4a5e3397c8af864a90ac9f 183 SUPERFAMILY SSF46689 7 74 2.05E-11 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_14930 e4824f926c4a5e3397c8af864a90ac9f 183 Gene3D G3DSA:1.10.357.10 2 180 2.3E-32 T 18-10-2018 RU84_14930 e4824f926c4a5e3397c8af864a90ac9f 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 5.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14930 e4824f926c4a5e3397c8af864a90ac9f 183 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 5.7E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14930 e4824f926c4a5e3397c8af864a90ac9f 183 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 53 2.0E-9 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06310 6f1bef295bba10193ddc21ac0f0c9016 235 SUPERFAMILY SSF159594 40 221 2.88E-21 T 18-10-2018 RU84_06310 6f1bef295bba10193ddc21ac0f0c9016 235 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 44 213 9.9E-24 T 18-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component RU84_10365 be0366120c734ed1d48a6f790d55263d 301 Gene3D G3DSA:3.40.190.10 167 268 1.6E-59 T 18-10-2018 RU84_10365 be0366120c734ed1d48a6f790d55263d 301 Pfam PF03466 LysR substrate binding domain 94 298 4.0E-37 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10365 be0366120c734ed1d48a6f790d55263d 301 Gene3D G3DSA:1.10.10.10 8 93 2.3E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10365 be0366120c734ed1d48a6f790d55263d 301 Gene3D G3DSA:3.40.190.10 95 296 1.6E-59 T 18-10-2018 RU84_10365 be0366120c734ed1d48a6f790d55263d 301 SUPERFAMILY SSF53850 94 298 2.35E-39 T 18-10-2018 RU84_10365 be0366120c734ed1d48a6f790d55263d 301 SUPERFAMILY SSF46785 10 115 1.39E-22 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10365 be0366120c734ed1d48a6f790d55263d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 67 7.1E-19 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_07285 5284d183a67ecde701e212739b6707e0 196 SMART SM01012 128 183 6.8E-20 T 18-10-2018 IPR005561 ANTAR domain GO:0003723 RU84_07285 5284d183a67ecde701e212739b6707e0 196 Pfam PF00072 Response regulator receiver domain 6 112 6.0E-9 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_07285 5284d183a67ecde701e212739b6707e0 196 Gene3D G3DSA:1.10.10.10 131 191 1.3E-15 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07285 5284d183a67ecde701e212739b6707e0 196 SUPERFAMILY SSF52172 1 183 3.56E-42 T 18-10-2018 IPR011006 CheY-like superfamily RU84_07285 5284d183a67ecde701e212739b6707e0 196 PIRSF PIRSF036382 1 190 1.1E-48 T 18-10-2018 IPR008327 Signal transduction response regulator, antiterminator RU84_07285 5284d183a67ecde701e212739b6707e0 196 Pfam PF03861 ANTAR domain 131 183 2.9E-16 T 18-10-2018 IPR005561 ANTAR domain GO:0003723 RU84_07285 5284d183a67ecde701e212739b6707e0 196 Gene3D G3DSA:3.40.50.2300 1 129 2.2E-13 T 18-10-2018 RU84_07285 5284d183a67ecde701e212739b6707e0 196 SMART SM00448 4 112 0.0038 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_11260 ccfa26b5ee6d38e6e9ad393663111cef 64 ProSitePatterns PS01047 Heavy-metal-associated domain. 5 34 - T 18-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 RU84_11260 ccfa26b5ee6d38e6e9ad393663111cef 64 Gene3D G3DSA:3.30.70.100 1 61 2.2E-18 T 18-10-2018 RU84_11260 ccfa26b5ee6d38e6e9ad393663111cef 64 Pfam PF00403 Heavy-metal-associated domain 4 58 7.1E-13 T 18-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 RU84_11260 ccfa26b5ee6d38e6e9ad393663111cef 64 SUPERFAMILY SSF55008 2 62 4.32E-16 T 18-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RU84_08360 d07bd88c8445924c24dbfbd55b690091 144 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 140 9.9E-33 T 18-10-2018 IPR006750 Putative inner membrane exporter, YdcZ RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 4 621 5.7E-201 T 18-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 8.0E-22 T 18-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 Pfam PF00361 Proton-conducting membrane transporter 134 412 1.0E-83 T 18-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 423 442 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 5.9E-52 T 18-10-2018 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 7.8E-8 T 18-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 7.8E-8 T 18-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RU84_14735 47a5c80bbe06ab7e1677c17c3b855735 629 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 422 444 7.8E-8 T 18-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 RU84_06900 c8b94f35ddf53096674359e45ae99a3f 390 SUPERFAMILY SSF56796 13 389 3.79E-136 T 18-10-2018 RU84_06900 c8b94f35ddf53096674359e45ae99a3f 390 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 267 287 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_06900 c8b94f35ddf53096674359e45ae99a3f 390 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 180 208 - T 18-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 RU84_06900 c8b94f35ddf53096674359e45ae99a3f 390 Gene3D G3DSA:1.20.1090.10 193 390 5.1E-78 T 18-10-2018 RU84_06900 c8b94f35ddf53096674359e45ae99a3f 390 Gene3D G3DSA:3.40.50.1970 3 191 7.7E-55 T 18-10-2018 RU84_06900 c8b94f35ddf53096674359e45ae99a3f 390 Pfam PF00465 Iron-containing alcohol dehydrogenase 20 382 5.5E-127 T 18-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 RU84_15835 a56c83e257b3a48124f630181341fba2 381 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 379 3.5E-109 T 18-10-2018 IPR017687 Outer membrane protein assembly factor BamB RU84_15835 a56c83e257b3a48124f630181341fba2 381 Gene3D G3DSA:2.130.10.10 46 380 1.4E-78 T 18-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 RU84_15835 a56c83e257b3a48124f630181341fba2 381 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 380 26.732 T 18-10-2018 IPR017687 Outer membrane protein assembly factor BamB RU84_15835 a56c83e257b3a48124f630181341fba2 381 Pfam PF13360 PQQ-like domain 78 309 1.9E-37 T 18-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SMART SM00564 143 175 0.15 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SMART SM00564 189 221 24.0 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SMART SM00564 103 135 6.9E-5 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SMART SM00564 279 310 2.6E-5 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SMART SM00564 241 272 99.0 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SMART SM00564 320 351 1.7 T 18-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat RU84_15835 a56c83e257b3a48124f630181341fba2 381 SUPERFAMILY SSF50998 46 367 3.69E-58 T 18-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily RU84_10555 0c6759606ef90398bfd08d069e2db237 400 Gene3D G3DSA:2.40.50.140 317 384 1.5E-12 T 18-10-2018 RU84_10555 0c6759606ef90398bfd08d069e2db237 400 SUPERFAMILY SSF50331 274 397 2.28E-10 T 18-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal RU84_10555 0c6759606ef90398bfd08d069e2db237 400 ProSitePatterns PS00211 ABC transporters family signature. 171 185 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_10555 0c6759606ef90398bfd08d069e2db237 400 SUPERFAMILY SSF52540 41 278 3.96E-83 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_10555 0c6759606ef90398bfd08d069e2db237 400 SMART SM00382 65 248 1.5E-19 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_10555 0c6759606ef90398bfd08d069e2db237 400 Pfam PF00005 ABC transporter 56 198 1.6E-35 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_10555 0c6759606ef90398bfd08d069e2db237 400 Gene3D G3DSA:3.40.50.300 38 253 1.0E-64 T 18-10-2018 RU84_10555 0c6759606ef90398bfd08d069e2db237 400 Gene3D G3DSA:2.40.50.940 255 393 1.5E-12 T 18-10-2018 RU84_05795 254f0211b4b88c4e2b08b4c1b768b026 231 Pfam PF01980 Uncharacterised protein family UPF0066 9 135 3.7E-40 T 18-10-2018 IPR023370 YaeB-like, N-terminal domain RU84_05795 254f0211b4b88c4e2b08b4c1b768b026 231 Gene3D G3DSA:3.30.2310.10 134 223 6.4E-14 T 18-10-2018 RU84_05795 254f0211b4b88c4e2b08b4c1b768b026 231 SUPERFAMILY SSF118196 2 222 6.93E-67 T 18-10-2018 IPR036413 YaeB-like superfamily RU84_05795 254f0211b4b88c4e2b08b4c1b768b026 231 Gene3D G3DSA:2.40.30.70 1 133 7.2E-43 T 18-10-2018 IPR036414 YaeB, N-terminal domain superfamily RU84_05795 254f0211b4b88c4e2b08b4c1b768b026 231 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 3 141 1.2E-37 T 18-10-2018 IPR023370 YaeB-like, N-terminal domain RU84_14675 4bb8057e0fd4c9d29361c95bee5f6812 293 Gene3D G3DSA:3.40.50.1100 19 284 1.6E-58 T 18-10-2018 RU84_14675 4bb8057e0fd4c9d29361c95bee5f6812 293 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 281 3.5E-18 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_14675 4bb8057e0fd4c9d29361c95bee5f6812 293 SUPERFAMILY SSF53686 16 284 8.21E-52 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_14675 4bb8057e0fd4c9d29361c95bee5f6812 293 Gene3D G3DSA:3.40.50.1100 37 142 1.6E-58 T 18-10-2018 RU84_14675 4bb8057e0fd4c9d29361c95bee5f6812 293 PIRSF PIRSF006278 2 290 1.0E-69 T 18-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase RU84_03695 399aa921051da73c6f99e149399acdc9 208 SMART SM00563 46 158 1.0E-18 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_03695 399aa921051da73c6f99e149399acdc9 208 SUPERFAMILY SSF69593 19 159 2.75E-19 T 18-10-2018 RU84_03695 399aa921051da73c6f99e149399acdc9 208 Pfam PF01553 Acyltransferase 46 151 2.2E-9 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_12540 d7f5c7d02a73aa5ab589c5931eca0259 159 Gene3D G3DSA:1.10.260.40 12 85 7.2E-10 T 18-10-2018 RU84_12540 d7f5c7d02a73aa5ab589c5931eca0259 159 SUPERFAMILY SSF47413 22 84 2.69E-10 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_12540 d7f5c7d02a73aa5ab589c5931eca0259 159 Pfam PF13744 Helix-turn-helix domain 21 81 1.6E-8 T 18-10-2018 IPR039554 HigA2-like, helix-turn-helix domain RU84_12540 d7f5c7d02a73aa5ab589c5931eca0259 159 SMART SM00530 27 82 5.9E-6 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_11925 1d82036fd68453302840ef302861ade1 612 Gene3D G3DSA:3.40.50.300 369 528 3.4E-10 T 18-10-2018 RU84_11925 1d82036fd68453302840ef302861ade1 612 TIGRFAM TIGR04435 restrict_AAA_1: restriction system-associated AAA family ATPase 1 603 8.1E-246 T 18-10-2018 IPR030974 Restriction system-associated AAA family ATPase RU84_11925 1d82036fd68453302840ef302861ade1 612 SUPERFAMILY SSF52540 47 520 8.04E-16 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11925 1d82036fd68453302840ef302861ade1 612 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 334 506 4.0E-11 T 18-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 RU84_17810 03ee42006fb29570a84bafc1f97e26f8 476 Pfam PF00324 Amino acid permease 24 467 1.2E-103 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_17810 03ee42006fb29570a84bafc1f97e26f8 476 ProSitePatterns PS00218 Amino acid permeases signature. 49 79 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_17810 03ee42006fb29570a84bafc1f97e26f8 476 Gene3D G3DSA:1.20.1740.10 14 474 3.7E-63 T 18-10-2018 RU84_17810 03ee42006fb29570a84bafc1f97e26f8 476 PIRSF PIRSF006060 3 475 1.5E-67 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_14940 6a8ef6b7a4013f41b124cd573869ac85 440 Pfam PF07690 Major Facilitator Superfamily 39 301 2.0E-39 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_14940 6a8ef6b7a4013f41b124cd573869ac85 440 Gene3D G3DSA:1.20.1250.20 28 231 4.9E-40 T 18-10-2018 RU84_14940 6a8ef6b7a4013f41b124cd573869ac85 440 Gene3D G3DSA:1.20.1250.20 242 435 1.1E-32 T 18-10-2018 RU84_14940 6a8ef6b7a4013f41b124cd573869ac85 440 SUPERFAMILY SSF103473 27 432 7.06E-83 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_12950 3e554ee64dab5451fbfad7dba778ef0c 432 SUPERFAMILY SSF103473 15 430 6.93E-61 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_12950 3e554ee64dab5451fbfad7dba778ef0c 432 Pfam PF07690 Major Facilitator Superfamily 66 301 6.2E-22 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_12950 3e554ee64dab5451fbfad7dba778ef0c 432 Gene3D G3DSA:1.20.1250.20 18 431 2.6E-57 T 18-10-2018 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 Pfam PF00255 Glutathione peroxidase 5 111 9.9E-40 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 SUPERFAMILY SSF52833 3 180 1.96E-54 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_17530 6249612c65a32adac631d75f5bd2926b 181 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 18-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.7E-18 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 PRINTS PR01011 Glutathione peroxidase family signature 141 150 1.7E-18 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.7E-18 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 Gene3D G3DSA:3.40.30.10 1 181 2.0E-61 T 18-10-2018 RU84_17530 6249612c65a32adac631d75f5bd2926b 181 PIRSF PIRSF000303 1 181 4.8E-61 T 18-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 RU84_19345 f49dbc4ca2121d0b7bf6845b0b8ce7d2 118 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 106 5.1E-25 T 18-10-2018 IPR009241 Toxin HigB-like RU84_12665 11d2be57384383b831dfaaa09f2c5a18 189 PIRSF PIRSF016919 3 189 1.9E-26 T 18-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RU84_12665 11d2be57384383b831dfaaa09f2c5a18 189 Pfam PF04955 HupE / UreJ protein 12 185 2.5E-26 T 18-10-2018 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein RU84_15365 a6b38ffabef4894c1e9f8369f673f4a3 269 Gene3D G3DSA:3.20.20.60 1 269 1.4E-97 T 18-10-2018 RU84_15365 a6b38ffabef4894c1e9f8369f673f4a3 269 SUPERFAMILY SSF51621 2 265 1.22E-94 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_15365 a6b38ffabef4894c1e9f8369f673f4a3 269 PIRSF PIRSF000388 1 268 7.3E-92 T 18-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RU84_15365 a6b38ffabef4894c1e9f8369f673f4a3 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 265 39.41 T 18-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RU84_15365 a6b38ffabef4894c1e9f8369f673f4a3 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 260 4.3E-99 T 18-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RU84_15365 a6b38ffabef4894c1e9f8369f673f4a3 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 7 266 4.0E-96 T 18-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 RU84_10640 d7151d587fefbec4b9f8b950e9fdf487 200 Gene3D G3DSA:3.30.1330.110 2 191 7.8E-65 T 18-10-2018 IPR035936 BB2672 superfamily RU84_10640 d7151d587fefbec4b9f8b950e9fdf487 200 Pfam PF06684 Amino acid synthesis 4 180 1.7E-65 T 18-10-2018 IPR009569 Amino acid synthesis, putative RU84_10640 d7151d587fefbec4b9f8b950e9fdf487 200 SUPERFAMILY SSF160519 4 193 2.62E-66 T 18-10-2018 IPR035936 BB2672 superfamily RU84_17580 f105addd31577ace0146878d81408702 132 Pfam PF03899 ATP synthase I chain 16 112 2.4E-20 T 18-10-2018 IPR005598 ATP synthase protein I RU84_14240 a426630e8ab7780d033228a27198c654 247 Gene3D G3DSA:1.10.260.40 1 66 9.3E-23 T 18-10-2018 RU84_14240 a426630e8ab7780d033228a27198c654 247 Pfam PF01381 Helix-turn-helix 8 62 1.1E-12 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_14240 a426630e8ab7780d033228a27198c654 247 SUPERFAMILY SSF51306 137 244 3.66E-18 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_14240 a426630e8ab7780d033228a27198c654 247 SMART SM00530 7 62 9.7E-14 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_14240 a426630e8ab7780d033228a27198c654 247 Pfam PF00717 Peptidase S24-like 163 230 3.2E-8 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_14240 a426630e8ab7780d033228a27198c654 247 SUPERFAMILY SSF47413 2 68 1.5E-16 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_14240 a426630e8ab7780d033228a27198c654 247 Gene3D G3DSA:2.10.109.10 127 246 6.3E-13 T 18-10-2018 RU84_13860 8b50a15ca8bbae640f3c6169c82ed756 291 Pfam PF10118 Predicted metal-dependent hydrolase 17 277 5.5E-77 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_13860 8b50a15ca8bbae640f3c6169c82ed756 291 PIRSF PIRSF007580 2 290 5.2E-72 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_13860 8b50a15ca8bbae640f3c6169c82ed756 291 Pfam PF00182 Chitinase class I 73 195 1.2E-4 T 18-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 Pfam PF09190 DALR domain 349 411 7.2E-20 T 18-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 SMART SM00840 349 411 9.0E-21 T 18-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 Gene3D G3DSA:3.40.50.620 1 309 3.4E-135 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 SUPERFAMILY SSF47323 330 471 3.14E-35 T 18-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 Gene3D G3DSA:1.20.120.640 311 472 2.2E-42 T 18-10-2018 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 5 471 2.5E-178 T 18-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 SUPERFAMILY SSF52374 6 316 2.3E-97 T 18-10-2018 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 4 472 38.506 T 18-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 63 72 8.7E-31 T 18-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 27 38 8.7E-31 T 18-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 226 247 8.7E-31 T 18-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 195 213 8.7E-31 T 18-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 RU84_11110 0befc7faee80b937ad6d3d34bf4e5de2 473 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 317 1.0E-132 T 18-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 157 178 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 52 68 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 133 157 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 416 433 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 357 376 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 33 52 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PRINTS PR01806 Virulence factor MviN signature 259 285 1.1E-69 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 PIRSF PIRSF002869 1 512 1.1E-155 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 Pfam PF03023 MviN-like protein 30 472 5.0E-130 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 503 6.0E-132 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_18065 929b6325e2e5667385186d4c85a447f3 513 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 474 19.676 T 18-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ RU84_05660 07c8d9987fa245f103fe773c84826041 150 Pfam PF06127 Protein of unknown function (DUF962) 1 135 6.1E-22 T 18-10-2018 IPR009305 Protein of unknown function DUF962 RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 SUPERFAMILY SSF48498 78 183 4.18E-20 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 Gene3D G3DSA:1.10.10.60 5 51 2.4E-18 T 18-10-2018 RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 7.8E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 7.8E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 SUPERFAMILY SSF46689 3 74 9.23E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 2.0E-12 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04285 f46d04f79b6bd24d0a382722df1d71ca 188 Gene3D G3DSA:1.10.357.10 52 183 6.8E-27 T 18-10-2018 RU84_08415 b554c999beeaaf53be2fdf09efbe0a35 458 SUPERFAMILY SSF103473 8 436 3.4E-82 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_08415 b554c999beeaaf53be2fdf09efbe0a35 458 Pfam PF07690 Major Facilitator Superfamily 26 400 3.1E-48 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_08415 b554c999beeaaf53be2fdf09efbe0a35 458 Gene3D G3DSA:1.20.1250.20 4 442 3.7E-76 T 18-10-2018 RU84_00955 a30c72adc665961b1cf51eacb8c259b7 113 Pfam PF06942 GlpM protein 6 111 1.4E-45 T 18-10-2018 IPR009707 Membrane protein GlpM/YdgC RU84_00955 a30c72adc665961b1cf51eacb8c259b7 113 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 15 108 7.0E-28 T 18-10-2018 IPR009707 Membrane protein GlpM/YdgC RU84_07985 a80a5e0b8073e5dc12bb984864cafe9b 137 Pfam PF04143 Sulphur transport 33 130 5.1E-9 T 18-10-2018 IPR007272 Sulphur transport domain RU84_18845 35246a825b236f667949bcd81ae33821 212 SUPERFAMILY SSF110849 8 127 2.79E-19 T 18-10-2018 IPR036086 ParB/Sulfiredoxin superfamily RU84_18845 35246a825b236f667949bcd81ae33821 212 Pfam PF02195 ParB-like nuclease domain 7 95 5.3E-14 T 18-10-2018 IPR003115 ParB/Sulfiredoxin RU84_18845 35246a825b236f667949bcd81ae33821 212 Gene3D G3DSA:3.90.1530.30 21 79 3.9E-7 T 18-10-2018 RU84_18845 35246a825b236f667949bcd81ae33821 212 SMART SM00470 6 96 3.1E-10 T 18-10-2018 IPR003115 ParB/Sulfiredoxin RU84_19260 b12159254005e866cbebd887a4567141 266 Pfam PF12083 Domain of unknown function (DUF3560) 9 129 1.7E-44 T 18-10-2018 IPR021944 Protein of unknown function DUF3560 RU84_03610 a8df12f7daac04e43617b6f4098f630a 501 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 105 501 2.8E-10 T 18-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) RU84_03610 a8df12f7daac04e43617b6f4098f630a 501 SUPERFAMILY SSF56935 14 501 3.57E-51 T 18-10-2018 RU84_03610 a8df12f7daac04e43617b6f4098f630a 501 Gene3D G3DSA:2.40.160.60 105 501 9.6E-22 T 18-10-2018 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 SUPERFAMILY SSF53383 1 397 4.65E-120 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 18-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 Gene3D G3DSA:3.90.1150.10 11 392 1.2E-153 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 Pfam PF00155 Aminotransferase class I and II 27 391 6.9E-83 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 Gene3D G3DSA:3.40.640.10 60 301 1.2E-153 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 PRINTS PR00799 Aspartate aminotransferase signature 342 360 2.3E-35 T 18-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 PRINTS PR00799 Aspartate aminotransferase signature 207 219 2.3E-35 T 18-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 PRINTS PR00799 Aspartate aminotransferase signature 176 195 2.3E-35 T 18-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RU84_17925 f358e8ddb2083a5067f9e63319da0d85 404 PRINTS PR00799 Aspartate aminotransferase signature 274 299 2.3E-35 T 18-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 RU84_15460 0a4c9a3ba2c78a6b468b3e9d0a85eab5 308 SUPERFAMILY SSF103481 220 305 1.96E-13 T 18-10-2018 RU84_15460 0a4c9a3ba2c78a6b468b3e9d0a85eab5 308 Pfam PF00892 EamA-like transporter family 10 147 7.6E-19 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_15460 0a4c9a3ba2c78a6b468b3e9d0a85eab5 308 Pfam PF00892 EamA-like transporter family 162 300 1.3E-15 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_15460 0a4c9a3ba2c78a6b468b3e9d0a85eab5 308 SUPERFAMILY SSF103481 47 151 2.48E-14 T 18-10-2018 RU84_03230 4993cf8a839276d7298cbbf6b4e00a88 147 SUPERFAMILY SSF54593 1 143 6.97E-30 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_03230 4993cf8a839276d7298cbbf6b4e00a88 147 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 140 2.0E-6 T 18-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RU84_03230 4993cf8a839276d7298cbbf6b4e00a88 147 Gene3D G3DSA:3.10.180.10 1 147 1.2E-43 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_18265 da1dbab71c6a85bf6e990d3fbc41040a 288 SUPERFAMILY SSF56281 39 246 7.98E-31 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_18265 da1dbab71c6a85bf6e990d3fbc41040a 288 SMART SM00849 41 222 6.7E-13 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_18265 da1dbab71c6a85bf6e990d3fbc41040a 288 Gene3D G3DSA:3.60.15.10 27 257 2.2E-21 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_01940 8e13da00df309eba6223027abfce7cf6 681 Gene3D G3DSA:2.40.50.140 40 133 1.8E-9 T 18-10-2018 RU84_01940 8e13da00df309eba6223027abfce7cf6 681 SUPERFAMILY SSF52540 192 442 2.29E-60 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01940 8e13da00df309eba6223027abfce7cf6 681 Pfam PF00271 Helicase conserved C-terminal domain 466 576 4.0E-17 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_01940 8e13da00df309eba6223027abfce7cf6 681 SUPERFAMILY SSF52540 282 639 1.36E-42 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01940 8e13da00df309eba6223027abfce7cf6 681 Pfam PF00270 DEAD/DEAH box helicase 262 422 2.1E-18 T 18-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 RU84_01940 8e13da00df309eba6223027abfce7cf6 681 Pfam PF17191 RecG wedge domain 6 163 2.1E-21 T 18-10-2018 IPR033454 RecG, wedge domain RU84_01940 8e13da00df309eba6223027abfce7cf6 681 SUPERFAMILY SSF50249 2 166 5.23E-33 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_01940 8e13da00df309eba6223027abfce7cf6 681 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 22 651 1.0E-229 T 18-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 RU84_01940 8e13da00df309eba6223027abfce7cf6 681 Gene3D G3DSA:3.40.50.300 446 618 2.1E-54 T 18-10-2018 RU84_01940 8e13da00df309eba6223027abfce7cf6 681 SMART SM00487 255 448 4.8E-31 T 18-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain RU84_01940 8e13da00df309eba6223027abfce7cf6 681 Gene3D G3DSA:3.40.50.300 198 439 9.2E-84 T 18-10-2018 RU84_01940 8e13da00df309eba6223027abfce7cf6 681 SMART SM00490 493 577 8.6E-22 T 18-10-2018 IPR001650 Helicase, C-terminal RU84_13060 dc081e3b89bd94ce59d3f9a563837918 113 Gene3D G3DSA:3.10.50.40 2 113 1.2E-42 T 18-10-2018 RU84_13060 dc081e3b89bd94ce59d3f9a563837918 113 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 16 105 4.9E-33 T 18-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RU84_13060 dc081e3b89bd94ce59d3f9a563837918 113 SUPERFAMILY SSF54534 4 111 2.75E-40 T 18-10-2018 RU84_16315 c71c30e23b8ef5b2472e54c2871af6e0 350 Pfam PF12706 Beta-lactamase superfamily domain 114 308 2.6E-35 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_16315 c71c30e23b8ef5b2472e54c2871af6e0 350 PIRSF PIRSF038896 3 350 2.8E-88 T 18-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 RU84_16315 c71c30e23b8ef5b2472e54c2871af6e0 350 Gene3D G3DSA:3.60.15.10 64 350 2.7E-68 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_16315 c71c30e23b8ef5b2472e54c2871af6e0 350 SUPERFAMILY SSF56281 95 313 1.97E-27 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_04690 67701f1a915a8d951f385e56c12722c9 335 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 327 1.7E-144 T 18-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RU84_04690 67701f1a915a8d951f385e56c12722c9 335 Gene3D G3DSA:3.40.190.10 116 326 2.2E-130 T 18-10-2018 RU84_04690 67701f1a915a8d951f385e56c12722c9 335 Pfam PF13531 Bacterial extracellular solute-binding protein 47 281 7.4E-43 T 18-10-2018 RU84_04690 67701f1a915a8d951f385e56c12722c9 335 Gene3D G3DSA:3.40.190.10 28 296 2.2E-130 T 18-10-2018 RU84_04690 67701f1a915a8d951f385e56c12722c9 335 SUPERFAMILY SSF53850 21 328 7.48E-84 T 18-10-2018 RU84_04690 67701f1a915a8d951f385e56c12722c9 335 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 147 155 - T 18-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 Pfam PF01494 FAD binding domain 5 345 3.7E-90 T 18-10-2018 IPR002938 FAD-binding domain GO:0071949 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 4 392 6.1E-210 T 18-10-2018 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 153 168 1.9E-26 T 18-10-2018 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 1.9E-26 T 18-10-2018 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 1.9E-26 T 18-10-2018 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 1.9E-26 T 18-10-2018 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 SUPERFAMILY SSF54373 177 277 2.67E-45 T 18-10-2018 RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 Gene3D G3DSA:3.50.50.60 5 353 7.0E-165 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 SUPERFAMILY SSF51905 5 392 2.69E-49 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_10580 a9a20d23774c0e7bb2d6c0507dc78355 404 Gene3D G3DSA:3.30.9.10 76 389 7.0E-165 T 18-10-2018 RU84_11975 80c04ac04d734981c2c14e20bcbabbde 301 Pfam PF08220 DeoR-like helix-turn-helix domain 14 58 6.1E-5 T 18-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 RU84_11975 80c04ac04d734981c2c14e20bcbabbde 301 Pfam PF13280 WYL domain 130 296 3.2E-27 T 18-10-2018 IPR026881 WYL domain RU84_11975 80c04ac04d734981c2c14e20bcbabbde 301 SUPERFAMILY SSF46785 11 60 7.37E-6 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_12700 c33284ea4e5692205fea4178641520f7 245 Pfam PF01774 UreD urease accessory protein 13 217 3.6E-45 T 18-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RU84_12700 c33284ea4e5692205fea4178641520f7 245 Hamap MF_01384 Urease accessory protein UreD [ureD]. 3 229 21.066 T 18-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.8E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.8E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.8E-9 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 SUPERFAMILY SSF51735 3 233 1.95E-57 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 Pfam PF00106 short chain dehydrogenase 3 187 6.1E-52 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 2.6E-25 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.6E-25 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.6E-25 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.6E-25 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.6E-25 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 2.6E-25 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 18-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 RU84_04775 8c64c646fe2c22bfff8331860ff9bf24 252 Gene3D G3DSA:3.40.50.720 2 238 1.1E-61 T 18-10-2018 RU84_08580 8c4ae266c1028579fc7516d4cdd17221 341 SMART SM00342 252 334 3.8E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08580 8c4ae266c1028579fc7516d4cdd17221 341 Gene3D G3DSA:1.10.10.60 232 340 2.8E-23 T 18-10-2018 RU84_08580 8c4ae266c1028579fc7516d4cdd17221 341 SUPERFAMILY SSF46689 287 337 4.93E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08580 8c4ae266c1028579fc7516d4cdd17221 341 Pfam PF12833 Helix-turn-helix domain 258 335 2.3E-16 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08580 8c4ae266c1028579fc7516d4cdd17221 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 49 208 6.3E-29 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 PRINTS PR00169 Potassium channel signature 159 182 1.1E-35 T 18-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 PRINTS PR00169 Potassium channel signature 63 86 1.1E-35 T 18-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 PRINTS PR00169 Potassium channel signature 21 49 1.1E-35 T 18-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 PRINTS PR00169 Potassium channel signature 219 245 1.1E-35 T 18-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 PRINTS PR00169 Potassium channel signature 130 156 1.1E-35 T 18-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 PRINTS PR00169 Potassium channel signature 190 212 1.1E-35 T 18-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 Pfam PF00520 Ion transport protein 28 246 2.6E-29 T 18-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 Gene3D G3DSA:1.10.287.70 27 249 2.3E-57 T 18-10-2018 RU84_06765 7dbf10f78e3ec794ccedd926bb3f4459 327 SUPERFAMILY SSF81324 27 246 4.35E-47 T 18-10-2018 RU84_16865 1aefa46d8551dc416fbaee7105bbf719 304 Gene3D G3DSA:2.60.120.330 44 229 1.7E-43 T 18-10-2018 IPR027443 Isopenicillin N synthase-like RU84_16865 1aefa46d8551dc416fbaee7105bbf719 304 SUPERFAMILY SSF51197 100 224 4.67E-17 T 18-10-2018 RU84_16865 1aefa46d8551dc416fbaee7105bbf719 304 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 70 223 1.2E-47 T 18-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 RU84_17510 06a2e6bb19a697e9200313920aa97506 302 SUPERFAMILY SSF103481 40 143 7.32E-14 T 18-10-2018 RU84_17510 06a2e6bb19a697e9200313920aa97506 302 Pfam PF00892 EamA-like transporter family 6 140 3.7E-25 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_17510 06a2e6bb19a697e9200313920aa97506 302 Pfam PF00892 EamA-like transporter family 155 285 5.7E-19 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_17510 06a2e6bb19a697e9200313920aa97506 302 SUPERFAMILY SSF103481 193 286 1.57E-11 T 18-10-2018 RU84_13000 18eea3c261b6a58837dfe3a4bdd2b455 309 SUPERFAMILY SSF54593 1 281 3.48E-30 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_13000 18eea3c261b6a58837dfe3a4bdd2b455 309 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 153 266 7.1E-12 T 18-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain RU84_13000 18eea3c261b6a58837dfe3a4bdd2b455 309 Gene3D G3DSA:3.10.180.10 147 291 3.0E-31 T 18-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase RU84_06735 fa3ba3e99639d69ae2f949f5e77beaa4 439 SUPERFAMILY SSF103473 9 427 9.94E-34 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_06735 fa3ba3e99639d69ae2f949f5e77beaa4 439 Gene3D G3DSA:1.20.1250.20 6 424 2.1E-31 T 18-10-2018 RU84_06735 fa3ba3e99639d69ae2f949f5e77beaa4 439 Pfam PF07690 Major Facilitator Superfamily 17 311 1.7E-16 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_13965 33df8c1477b70ffa4d14f7b1150bb7ad 394 Pfam PF07396 Phosphate-selective porin O and P 100 199 3.6E-6 T 18-10-2018 IPR010870 Phosphate-selective porin O/P RU84_13965 33df8c1477b70ffa4d14f7b1150bb7ad 394 SUPERFAMILY SSF56935 35 394 1.71E-5 T 18-10-2018 RU84_13120 6b5abcd429b952a5d97d691b8ff9ae2b 546 Gene3D G3DSA:3.50.50.60 205 276 4.6E-5 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13120 6b5abcd429b952a5d97d691b8ff9ae2b 546 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 41 522 1.8E-191 T 18-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 RU84_13120 6b5abcd429b952a5d97d691b8ff9ae2b 546 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 41 524 6.9E-219 T 18-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 RU84_13120 6b5abcd429b952a5d97d691b8ff9ae2b 546 SUPERFAMILY SSF51905 39 360 1.58E-23 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_13120 6b5abcd429b952a5d97d691b8ff9ae2b 546 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 37 524 49.345 T 18-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 RU84_17110 eed37cfec88d33497ae7b76927557f22 448 Gene3D G3DSA:1.20.1600.10 22 448 1.5E-99 T 18-10-2018 RU84_17110 eed37cfec88d33497ae7b76927557f22 448 Pfam PF02321 Outer membrane efflux protein 245 431 1.6E-32 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_17110 eed37cfec88d33497ae7b76927557f22 448 Pfam PF02321 Outer membrane efflux protein 25 222 6.5E-22 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_17110 eed37cfec88d33497ae7b76927557f22 448 SUPERFAMILY SSF56954 1 435 1.96E-87 T 18-10-2018 RU84_17110 eed37cfec88d33497ae7b76927557f22 448 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 20 445 7.3E-80 T 18-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 RU84_13010 1b5d7435232755fa02382deeee551459 355 Pfam PF00355 Rieske [2Fe-2S] domain 22 112 1.0E-17 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_13010 1b5d7435232755fa02382deeee551459 355 Gene3D G3DSA:3.30.530.90 151 340 3.8E-7 T 18-10-2018 RU84_13010 1b5d7435232755fa02382deeee551459 355 SUPERFAMILY SSF50022 10 132 1.7E-32 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_13010 1b5d7435232755fa02382deeee551459 355 Gene3D G3DSA:2.102.10.10 19 150 8.7E-34 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_13010 1b5d7435232755fa02382deeee551459 355 SUPERFAMILY SSF55961 136 334 2.53E-41 T 18-10-2018 RU84_02215 1e4705ad9763692c797112d6674b860c 198 SUPERFAMILY SSF56784 2 188 3.89E-21 T 18-10-2018 IPR036412 HAD-like superfamily RU84_02215 1e4705ad9763692c797112d6674b860c 198 Gene3D G3DSA:3.40.50.1000 3 189 3.3E-25 T 18-10-2018 IPR023214 HAD superfamily RU84_02215 1e4705ad9763692c797112d6674b860c 198 Gene3D G3DSA:1.20.1440.100 15 87 3.3E-25 T 18-10-2018 RU84_02215 1e4705ad9763692c797112d6674b860c 198 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 185 4.8E-27 T 18-10-2018 RU84_02215 1e4705ad9763692c797112d6674b860c 198 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 187 1.5E-24 T 18-10-2018 RU84_02215 1e4705ad9763692c797112d6674b860c 198 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 192 4.5E-31 T 18-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like RU84_06995 ea79ceb18007b46e6b5a801ad2052d1d 184 SUPERFAMILY SSF46689 6 73 4.16E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06995 ea79ceb18007b46e6b5a801ad2052d1d 184 Gene3D G3DSA:1.10.357.10 3 179 2.8E-23 T 18-10-2018 RU84_06995 ea79ceb18007b46e6b5a801ad2052d1d 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 57 1.5E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06995 ea79ceb18007b46e6b5a801ad2052d1d 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_06995 ea79ceb18007b46e6b5a801ad2052d1d 184 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.3E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_15525 79b07b4de69744de155f75ff481c0b00 144 Pfam PF03960 ArsC family 10 117 2.0E-15 T 18-10-2018 IPR006660 Arsenate reductase-like RU84_15525 79b07b4de69744de155f75ff481c0b00 144 SUPERFAMILY SSF52833 6 141 1.43E-36 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_15525 79b07b4de69744de155f75ff481c0b00 144 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 7 119 5.1E-40 T 18-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 RU84_15525 79b07b4de69744de155f75ff481c0b00 144 Gene3D G3DSA:3.40.30.10 5 144 9.4E-55 T 18-10-2018 RU84_09685 52ac8472ef8a46d0290f642e709fe832 339 Gene3D G3DSA:2.60.40.1090 193 339 7.5E-25 T 18-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 RU84_09685 52ac8472ef8a46d0290f642e709fe832 339 Pfam PF00419 Fimbrial protein 185 338 7.4E-19 T 18-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 RU84_09685 52ac8472ef8a46d0290f642e709fe832 339 Gene3D G3DSA:2.60.40.3310 23 192 8.6E-46 T 18-10-2018 RU84_09685 52ac8472ef8a46d0290f642e709fe832 339 SUPERFAMILY SSF49401 191 339 2.98E-20 T 18-10-2018 IPR008966 Adhesion domain superfamily RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 430 8.6E-189 T 18-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 Gene3D G3DSA:3.90.1150.10 10 424 3.3E-176 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 SUPERFAMILY SSF53383 5 430 3.6E-129 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 275 - T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 Gene3D G3DSA:3.40.640.10 72 322 3.3E-176 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 Pfam PF00202 Aminotransferase class-III 35 401 7.2E-77 T 18-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 RU84_05030 4afae4018687fbed6cc1b305419f7c48 432 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 431 105.433 T 18-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 RU84_09110 68a19a9c3a99db71a490c7d4a11c51d9 407 Pfam PF00487 Fatty acid desaturase 131 339 1.4E-27 T 18-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RU84_03070 6df92bcffb12131069c31d6282742ba2 192 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 185 3.1E-51 T 18-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RU84_03070 6df92bcffb12131069c31d6282742ba2 192 Gene3D G3DSA:1.20.1200.10 17 189 1.6E-54 T 18-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RU84_03070 6df92bcffb12131069c31d6282742ba2 192 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 26 186 2.0E-76 T 18-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RU84_03070 6df92bcffb12131069c31d6282742ba2 192 SUPERFAMILY SSF89028 7 185 2.94E-56 T 18-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RU84_03070 6df92bcffb12131069c31d6282742ba2 192 Pfam PF01923 Cobalamin adenosyltransferase 8 172 3.2E-54 T 18-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 RU84_08560 321891704cb467a60ef4d69600b3caad 299 Gene3D G3DSA:3.40.190.290 92 295 1.5E-47 T 18-10-2018 RU84_08560 321891704cb467a60ef4d69600b3caad 299 Gene3D G3DSA:1.10.10.10 3 90 6.5E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08560 321891704cb467a60ef4d69600b3caad 299 SUPERFAMILY SSF53850 90 297 4.34E-37 T 18-10-2018 RU84_08560 321891704cb467a60ef4d69600b3caad 299 SUPERFAMILY SSF46785 4 89 1.56E-22 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08560 321891704cb467a60ef4d69600b3caad 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 9.3E-21 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08560 321891704cb467a60ef4d69600b3caad 299 Pfam PF03466 LysR substrate binding domain 89 296 6.7E-34 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08560 321891704cb467a60ef4d69600b3caad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.4E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08560 321891704cb467a60ef4d69600b3caad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.4E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08560 321891704cb467a60ef4d69600b3caad 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.4E-8 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_15930 46cf8c6a67df166b4044f988b84f5504 206 Gene3D G3DSA:3.20.20.70 1 206 7.0E-70 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_15930 46cf8c6a67df166b4044f988b84f5504 206 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 18-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RU84_15930 46cf8c6a67df166b4044f988b84f5504 206 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 18-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RU84_15930 46cf8c6a67df166b4044f988b84f5504 206 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 5 203 1.1E-72 T 18-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RU84_15930 46cf8c6a67df166b4044f988b84f5504 206 SUPERFAMILY SSF51569 4 203 7.87E-64 T 18-10-2018 RU84_15930 46cf8c6a67df166b4044f988b84f5504 206 Pfam PF01081 KDPG and KHG aldolase 4 199 4.9E-66 T 18-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 RU84_14835 7847fb39a0946bd4170c1a25e17eb84d 199 Gene3D G3DSA:1.10.357.10 19 198 5.3E-32 T 18-10-2018 RU84_14835 7847fb39a0946bd4170c1a25e17eb84d 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 4.6E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14835 7847fb39a0946bd4170c1a25e17eb84d 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 7.0E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14835 7847fb39a0946bd4170c1a25e17eb84d 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 7.0E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_14835 7847fb39a0946bd4170c1a25e17eb84d 199 SUPERFAMILY SSF46689 9 90 4.89E-18 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03340 7c8da0eef398275ca98208428a85739a 118 Pfam PF04343 Protein of unknown function, DUF488 4 112 2.0E-33 T 18-10-2018 IPR007438 Protein of unknown function DUF488 RU84_04275 a5b6aa180871528550f17779d965ff9b 201 Gene3D G3DSA:3.40.109.10 1 197 1.0E-47 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_04275 a5b6aa180871528550f17779d965ff9b 201 Pfam PF00881 Nitroreductase family 7 178 2.6E-30 T 18-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RU84_04275 a5b6aa180871528550f17779d965ff9b 201 SUPERFAMILY SSF55469 1 196 1.57E-50 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_11290 cb67f92ae4caf97aa0f9d6594f6a8ff6 120 Pfam PF04663 Phenol hydroxylase conserved region 16 79 2.5E-21 T 18-10-2018 IPR006756 Phenol hydroxylase KEGG: 00623+1.14.13.7|KEGG: 00627+1.14.13.7|MetaCyc: PWY-5418|MetaCyc: PWY-6197 RU84_11290 cb67f92ae4caf97aa0f9d6594f6a8ff6 120 Gene3D G3DSA:3.10.20.560 18 119 1.3E-36 T 18-10-2018 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 SMART SM00448 4 116 1.5E-32 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 Gene3D G3DSA:3.40.50.2300 1 122 7.6E-35 T 18-10-2018 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 Pfam PF00072 Response regulator receiver domain 6 116 4.3E-25 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 SUPERFAMILY SSF46894 127 224 7.94E-22 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 Gene3D G3DSA:1.10.10.10 123 229 2.0E-24 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 221 1.0E-19 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 SMART SM00862 150 224 1.2E-17 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_06375 3927905e144297a5a8467f5e2aae2f4a 231 SUPERFAMILY SSF52172 2 126 5.41E-36 T 18-10-2018 IPR011006 CheY-like superfamily RU84_04025 0ff3fe7d3710399bbaaf072e50c15862 195 Gene3D G3DSA:1.10.357.10 2 194 1.1E-52 T 18-10-2018 RU84_04025 0ff3fe7d3710399bbaaf072e50c15862 195 SUPERFAMILY SSF46689 4 86 4.46E-22 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_04025 0ff3fe7d3710399bbaaf072e50c15862 195 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.2E-16 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04025 0ff3fe7d3710399bbaaf072e50c15862 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 9.4E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04025 0ff3fe7d3710399bbaaf072e50c15862 195 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 9.4E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04025 0ff3fe7d3710399bbaaf072e50c15862 195 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 247 38.011 T 18-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 SUPERFAMILY SSF55315 3 78 5.89E-17 T 18-10-2018 IPR029064 50S ribosomal protein L30e-like RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 SMART SM00967 6 82 4.1E-16 T 18-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 Gene3D G3DSA:3.30.1330.30 1 78 7.0E-24 T 18-10-2018 IPR029064 50S ribosomal protein L30e-like RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 Pfam PF00588 SpoU rRNA Methylase family 98 240 3.6E-37 T 18-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 SUPERFAMILY SSF75217 70 246 4.97E-45 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 Gene3D G3DSA:3.40.1280.10 81 247 7.4E-52 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 246 3.7E-64 T 18-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 RU84_16785 404e6aa3052bf04496d4ec1de11f98aa 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 6 80 1.5E-17 T 18-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 RU84_02000 d6d650684e2301a70a126bbac69403fa 242 Gene3D G3DSA:3.40.50.880 5 241 5.3E-52 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_02000 d6d650684e2301a70a126bbac69403fa 242 SUPERFAMILY SSF52317 30 216 6.45E-40 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_02000 d6d650684e2301a70a126bbac69403fa 242 Pfam PF00117 Glutamine amidotransferase class-I 48 193 4.5E-16 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_13165 475d69a369c9a69e737fcc3ebaf94ac1 461 ProSitePatterns PS00217 Sugar transport proteins signature 2. 131 156 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_13165 475d69a369c9a69e737fcc3ebaf94ac1 461 SUPERFAMILY SSF103473 21 458 5.1E-84 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_13165 475d69a369c9a69e737fcc3ebaf94ac1 461 Pfam PF00083 Sugar (and other) transporter 69 459 1.1E-52 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_13165 475d69a369c9a69e737fcc3ebaf94ac1 461 Gene3D G3DSA:1.20.1250.20 33 453 2.2E-88 T 18-10-2018 RU84_11395 77344943745bc5bf7cc19b448fa49668 238 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 59 237 4.4E-53 T 18-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RU84_11395 77344943745bc5bf7cc19b448fa49668 238 Gene3D G3DSA:3.40.50.150 34 238 2.7E-57 T 18-10-2018 RU84_11395 77344943745bc5bf7cc19b448fa49668 238 Pfam PF02390 Putative methyltransferase 64 230 5.0E-51 T 18-10-2018 RU84_11395 77344943745bc5bf7cc19b448fa49668 238 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 26 237 28.855 T 18-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 RU84_11395 77344943745bc5bf7cc19b448fa49668 238 SUPERFAMILY SSF53335 45 235 6.17E-28 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_18040 5afba636b2f7053e8b57b1d42e2159a2 366 Gene3D G3DSA:3.10.560.10 48 336 6.5E-83 T 18-10-2018 RU84_18040 5afba636b2f7053e8b57b1d42e2159a2 366 Gene3D G3DSA:3.10.560.10 60 251 6.5E-83 T 18-10-2018 RU84_18040 5afba636b2f7053e8b57b1d42e2159a2 366 Pfam PF02563 Polysaccharide biosynthesis/export protein 74 162 1.4E-23 T 18-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 RU84_18040 5afba636b2f7053e8b57b1d42e2159a2 366 Gene3D G3DSA:3.30.1950.10 82 166 6.5E-83 T 18-10-2018 RU84_04840 508308aa654440a04469762693bf5b4b 314 SUPERFAMILY SSF103481 196 283 5.1E-7 T 18-10-2018 RU84_04840 508308aa654440a04469762693bf5b4b 314 TIGRFAM TIGR00688 rarD: protein RarD 3 255 6.7E-55 T 18-10-2018 IPR004626 RarD protein GO:0005887 RU84_04840 508308aa654440a04469762693bf5b4b 314 Pfam PF00892 EamA-like transporter family 3 139 4.2E-11 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_04840 508308aa654440a04469762693bf5b4b 314 SUPERFAMILY SSF103481 36 139 4.71E-9 T 18-10-2018 RU84_06245 7321c43dc344ad1f681492fdfabe04ae 832 Gene3D G3DSA:2.60.40.3110 269 357 9.6E-9 T 18-10-2018 RU84_06245 7321c43dc344ad1f681492fdfabe04ae 832 Gene3D G3DSA:2.60.40.2070 747 829 1.6E-8 T 18-10-2018 RU84_06245 7321c43dc344ad1f681492fdfabe04ae 832 Pfam PF13953 PapC C-terminal domain 752 809 1.4E-13 T 18-10-2018 IPR025949 PapC-like, C-terminal domain RU84_06245 7321c43dc344ad1f681492fdfabe04ae 832 Gene3D G3DSA:2.60.40.2610 653 744 2.3E-11 T 18-10-2018 RU84_06245 7321c43dc344ad1f681492fdfabe04ae 832 Pfam PF00577 Outer membrane usher protein 241 740 9.1E-36 T 18-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 RU84_06245 7321c43dc344ad1f681492fdfabe04ae 832 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 310 320 - T 18-10-2018 IPR018030 Fimbrial membrane usher, conserved site RU84_11335 e39a97224d339cfa687ef9dddf78fd4d 452 Gene3D G3DSA:1.20.1250.20 19 430 9.4E-76 T 18-10-2018 RU84_11335 e39a97224d339cfa687ef9dddf78fd4d 452 SUPERFAMILY SSF103473 9 429 1.16E-83 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_11335 e39a97224d339cfa687ef9dddf78fd4d 452 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_11335 e39a97224d339cfa687ef9dddf78fd4d 452 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 8 402 9.2E-131 T 18-10-2018 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0016021|GO:0022857|GO:0055085 RU84_11335 e39a97224d339cfa687ef9dddf78fd4d 452 Pfam PF07690 Major Facilitator Superfamily 29 337 2.5E-38 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_01680 2061ec9da00676375ab76d8c56d3568a 716 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 11 708 1.6E-203 T 18-10-2018 IPR010019 Integral membrane protein, YccS RU84_01680 2061ec9da00676375ab76d8c56d3568a 716 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 11 707 1.4E-198 T 18-10-2018 IPR010020 Integral membrane protein, YccS/YhfK RU84_01680 2061ec9da00676375ab76d8c56d3568a 716 Pfam PF13515 Fusaric acid resistance protein-like 409 530 1.4E-22 T 18-10-2018 RU84_01680 2061ec9da00676375ab76d8c56d3568a 716 Pfam PF12805 FUSC-like inner membrane protein yccS 68 346 2.4E-86 T 18-10-2018 IPR032692 Integral membrane protein YccS, N-terminal RU84_00365 bd7bbb5b9cb80f9418f14c0f5d8a6889 409 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 13 217 3.7E-60 T 18-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain RU84_00365 bd7bbb5b9cb80f9418f14c0f5d8a6889 409 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 264 379 3.5E-30 T 18-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RU84_00365 bd7bbb5b9cb80f9418f14c0f5d8a6889 409 Gene3D G3DSA:3.40.50.300 10 237 1.1E-73 T 18-10-2018 RU84_00365 bd7bbb5b9cb80f9418f14c0f5d8a6889 409 SUPERFAMILY SSF52540 10 327 7.01E-47 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00365 bd7bbb5b9cb80f9418f14c0f5d8a6889 409 SMART SM00833 264 379 1.7E-52 T 18-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal RU84_16700 fe2909a459fb8b37a2e10bb62a81afff 175 PIRSF PIRSF019239 7 170 1.3E-48 T 18-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RU84_16700 fe2909a459fb8b37a2e10bb62a81afff 175 Pfam PF01899 Na+/H+ ion antiporter subunit 18 164 1.1E-36 T 18-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 RU84_02585 6aea7c16242cf6b8421c7685c60ae35b 491 Gene3D G3DSA:2.60.40.10 176 257 4.1E-5 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_02585 6aea7c16242cf6b8421c7685c60ae35b 491 SUPERFAMILY SSF49373 173 245 1.14E-5 T 18-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments RU84_01660 5feeae9292138b266ad60ffa00d08498 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 87 1.5E-21 T 18-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain RU84_01660 5feeae9292138b266ad60ffa00d08498 104 SUPERFAMILY SSF54909 1 99 2.19E-27 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_01660 5feeae9292138b266ad60ffa00d08498 104 Gene3D G3DSA:3.30.70.100 1 104 1.2E-30 T 18-10-2018 RU84_16340 5fa86d3ab5343dcf44abc2899df106ca 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 2.7E-34 T 18-10-2018 RU84_16340 5fa86d3ab5343dcf44abc2899df106ca 224 Gene3D G3DSA:1.10.150.240 20 83 1.2E-49 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_16340 5fa86d3ab5343dcf44abc2899df106ca 224 Gene3D G3DSA:3.40.50.1000 8 204 1.2E-49 T 18-10-2018 IPR023214 HAD superfamily RU84_16340 5fa86d3ab5343dcf44abc2899df106ca 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 76 177 3.6E-9 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_16340 5fa86d3ab5343dcf44abc2899df106ca 224 SUPERFAMILY SSF56784 4 215 5.19E-56 T 18-10-2018 IPR036412 HAD-like superfamily RU84_14085 eb62718d85c42a4fb0d3ee494fba554f 115 Pfam PF05521 Phage head-tail joining protein 9 104 8.3E-27 T 18-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor RU84_14085 eb62718d85c42a4fb0d3ee494fba554f 115 Gene3D G3DSA:2.40.10.270 3 113 1.4E-32 T 18-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily RU84_14085 eb62718d85c42a4fb0d3ee494fba554f 115 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 8 96 1.6E-16 T 18-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor RU84_01685 804b02258b4efbb1b3814f350c6bf098 191 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 179 190 - T 18-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RU84_01685 804b02258b4efbb1b3814f350c6bf098 191 SUPERFAMILY SSF49329 46 191 1.15E-44 T 18-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RU84_01685 804b02258b4efbb1b3814f350c6bf098 191 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 85 95 - T 18-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RU84_01685 804b02258b4efbb1b3814f350c6bf098 191 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 55 190 6.8E-32 T 18-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RU84_01685 804b02258b4efbb1b3814f350c6bf098 191 Gene3D G3DSA:2.60.40.200 40 191 5.9E-49 T 18-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 RU84_06685 9061ba971d4f635f3580fc3239bc98d8 126 Gene3D G3DSA:3.30.1130.10 1 121 1.7E-32 T 18-10-2018 RU84_06685 9061ba971d4f635f3580fc3239bc98d8 126 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 114 7.7E-25 T 18-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RU84_06685 9061ba971d4f635f3580fc3239bc98d8 126 SMART SM00905 4 115 1.4E-37 T 18-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RU84_06685 9061ba971d4f635f3580fc3239bc98d8 126 Pfam PF02152 Dihydroneopterin aldolase 4 113 1.4E-28 T 18-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RU84_06685 9061ba971d4f635f3580fc3239bc98d8 126 TIGRFAM TIGR00526 folB_dom: FolB domain 1 119 1.2E-27 T 18-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 RU84_06685 9061ba971d4f635f3580fc3239bc98d8 126 SUPERFAMILY SSF55620 1 117 2.39E-30 T 18-10-2018 RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 Pfam PF00155 Aminotransferase class I and II 136 466 2.7E-27 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 Gene3D G3DSA:1.10.10.10 6 83 3.2E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 82 2.6E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 Gene3D G3DSA:3.40.640.10 103 465 8.9E-102 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 SUPERFAMILY SSF46785 15 85 6.39E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 1.8E-5 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 1.8E-5 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 SUPERFAMILY SSF53383 76 470 9.26E-81 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_17300 c652cd8bdeb6340ced4ea47cc1662b95 470 SMART SM00345 23 82 5.5E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_05540 a898a582cbd1e0b19077cf694142c235 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 240 2.5E-64 T 18-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RU84_05540 a898a582cbd1e0b19077cf694142c235 252 SUPERFAMILY SSF102705 1 251 7.32E-79 T 18-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily RU84_05540 a898a582cbd1e0b19077cf694142c235 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 2 250 4.8E-62 T 18-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 RU84_05540 a898a582cbd1e0b19077cf694142c235 252 Gene3D G3DSA:3.40.1390.30 7 239 3.1E-83 T 18-10-2018 RU84_05540 a898a582cbd1e0b19077cf694142c235 252 Gene3D G3DSA:3.40.1390.30 98 223 3.1E-83 T 18-10-2018 RU84_11540 ada9dea529a5fc881f0eaeb8b5c5e828 332 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 10 328 9.9E-128 T 18-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 RU84_11540 ada9dea529a5fc881f0eaeb8b5c5e828 332 SUPERFAMILY SSF51556 5 331 8.51E-95 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_11540 ada9dea529a5fc881f0eaeb8b5c5e828 332 Hamap MF_01962 Adenine deaminase. 6 318 90.177 T 18-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 RU84_11540 ada9dea529a5fc881f0eaeb8b5c5e828 332 Pfam PF00962 Adenosine/AMP deaminase 10 327 1.0E-81 T 18-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 RU84_11540 ada9dea529a5fc881f0eaeb8b5c5e828 332 Gene3D G3DSA:3.20.20.140 1 332 8.4E-111 T 18-10-2018 RU84_04440 9770728f61dd6bbc5df1275746b10fbd 228 SMART SM00382 34 223 1.4E-12 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_04440 9770728f61dd6bbc5df1275746b10fbd 228 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 223 6.1E-94 T 18-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 RU84_04440 9770728f61dd6bbc5df1275746b10fbd 228 SUPERFAMILY SSF52540 5 226 3.04E-68 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_04440 9770728f61dd6bbc5df1275746b10fbd 228 Gene3D G3DSA:3.40.50.300 3 226 6.6E-66 T 18-10-2018 RU84_04440 9770728f61dd6bbc5df1275746b10fbd 228 Pfam PF00005 ABC transporter 26 174 1.4E-32 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_04440 9770728f61dd6bbc5df1275746b10fbd 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_16705 f069d907abe33c846908a74c3e3a6fea 91 PIRSF PIRSF028784 1 91 4.7E-27 T 18-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RU84_16705 f069d907abe33c846908a74c3e3a6fea 91 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 84 1.9E-17 T 18-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Gene3D G3DSA:3.30.70.610 359 430 3.5E-18 T 18-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Gene3D G3DSA:3.30.70.610 267 344 5.0E-14 T 18-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Pfam PF01565 FAD binding domain 45 163 1.3E-7 T 18-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Gene3D G3DSA:3.30.465.10 103 266 1.2E-74 T 18-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 RU84_17930 008767a5a93f351a1c285382c3227e06 568 SUPERFAMILY SSF56176 7 269 1.45E-69 T 18-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 RU84_17930 008767a5a93f351a1c285382c3227e06 568 SUPERFAMILY SSF55103 274 563 1.01E-105 T 18-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 RU84_17930 008767a5a93f351a1c285382c3227e06 568 PIRSF PIRSF000101 1 565 3.0E-270 T 18-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 7 564 56.964 T 18-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Gene3D G3DSA:3.30.43.10 2 100 4.2E-12 T 18-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Pfam PF09330 D-lactate dehydrogenase, membrane binding 275 563 1.3E-134 T 18-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 RU84_17930 008767a5a93f351a1c285382c3227e06 568 Gene3D G3DSA:3.30.1370.20 431 515 5.3E-40 T 18-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 RU84_07215 4f7488267995611e00e19fad42bfa386 351 Gene3D G3DSA:3.60.60.10 24 350 3.5E-128 T 18-10-2018 RU84_07215 4f7488267995611e00e19fad42bfa386 351 SUPERFAMILY SSF56235 24 329 9.26E-98 T 18-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal RU84_07215 4f7488267995611e00e19fad42bfa386 351 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 24 311 2.7E-46 T 18-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal RU84_00970 8852e693efa743c23031b0b0633ff7f3 454 Gene3D G3DSA:1.20.1250.20 1 384 1.3E-68 T 18-10-2018 RU84_00970 8852e693efa743c23031b0b0633ff7f3 454 Gene3D G3DSA:3.30.70.100 385 447 1.0E-7 T 18-10-2018 RU84_00970 8852e693efa743c23031b0b0633ff7f3 454 SUPERFAMILY SSF103473 6 384 4.45E-54 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_00970 8852e693efa743c23031b0b0633ff7f3 454 Pfam PF07690 Major Facilitator Superfamily 15 349 5.0E-38 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_11885 a2f38ff335df67e8573f1a9e7ccf8fc0 292 SUPERFAMILY SSF53850 41 282 2.92E-64 T 18-10-2018 RU84_11885 a2f38ff335df67e8573f1a9e7ccf8fc0 292 Pfam PF03180 NLPA lipoprotein 46 281 3.7E-63 T 18-10-2018 IPR004872 Lipoprotein NlpA family RU84_11885 a2f38ff335df67e8573f1a9e7ccf8fc0 292 Gene3D G3DSA:3.40.190.10 124 230 6.0E-73 T 18-10-2018 RU84_11885 a2f38ff335df67e8573f1a9e7ccf8fc0 292 Gene3D G3DSA:3.40.190.10 46 276 6.0E-73 T 18-10-2018 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 3 441 33.824 T 18-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 Gene3D G3DSA:1.10.3090.10 157 399 3.0E-68 T 18-10-2018 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 186 246 2.2E-11 T 18-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 Gene3D G3DSA:3.30.460.10 2 155 7.1E-46 T 18-10-2018 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 Pfam PF01743 Poly A polymerase head domain 34 159 1.0E-29 T 18-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 SUPERFAMILY SSF81891 157 384 5.1E-38 T 18-10-2018 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 6 407 2.6E-117 T 18-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 Pfam PF12626 Polymerase A arginine-rich C-terminus 296 408 3.1E-29 T 18-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain RU84_15375 8838d3b2fae9d518dd4a3ea375668781 487 SUPERFAMILY SSF81301 10 156 2.29E-33 T 18-10-2018 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 Gene3D G3DSA:2.60.40.180 1 107 5.8E-39 T 18-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 PRINTS PR00189 Transthyretin signature 1 21 4.2E-8 T 18-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 PRINTS PR00189 Transthyretin signature 85 107 4.2E-8 T 18-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 107 4.0E-39 T 18-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 Pfam PF00576 HIUase/Transthyretin family 2 106 9.3E-36 T 18-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 ProSitePatterns PS00768 Transthyretin signature 1. 5 20 - T 18-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_00645 8308b9c949183abe31556c7b5dd112d3 107 SUPERFAMILY SSF49472 2 107 2.49E-37 T 18-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 RU84_07840 83bdbc7d66a5f7c8193b5ad26d8cb856 305 SUPERFAMILY SSF53474 3 300 1.5E-38 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07840 83bdbc7d66a5f7c8193b5ad26d8cb856 305 Gene3D G3DSA:3.40.50.1820 2 300 4.2E-38 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07840 83bdbc7d66a5f7c8193b5ad26d8cb856 305 Pfam PF12697 Alpha/beta hydrolase family 23 289 2.5E-16 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_07145 99ebb60d4f8d4fff611da34f560a8947 192 SUPERFAMILY SSF48498 84 190 9.49E-16 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_07145 99ebb60d4f8d4fff611da34f560a8947 192 SUPERFAMILY SSF46689 4 69 1.03E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_07145 99ebb60d4f8d4fff611da34f560a8947 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 51 1.5E-8 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07145 99ebb60d4f8d4fff611da34f560a8947 192 Gene3D G3DSA:1.10.357.10 6 192 2.1E-27 T 18-10-2018 RU84_17975 836dab161c653f66909bffeec20aeef8 206 Pfam PF02397 Bacterial sugar transferase 2 176 1.1E-64 T 18-10-2018 IPR003362 Bacterial sugar transferase RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 11 186 4.6E-59 T 18-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PIRSF PIRSF500210 1 323 1.3E-121 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 63 89 5.3E-66 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 140 163 5.3E-66 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 197 224 5.3E-66 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 299 323 5.3E-66 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 26 53 5.3E-66 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 171 194 5.3E-66 T 18-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 Gene3D G3DSA:3.30.540.10 2 187 8.4E-66 T 18-10-2018 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 PIRSF PIRSF000904 1 323 5.4E-120 T 18-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 SUPERFAMILY SSF56655 5 323 2.96E-109 T 18-10-2018 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 Gene3D G3DSA:3.40.190.80 188 323 8.0E-51 T 18-10-2018 RU84_04535 577dc7924fad42ec11ab1836c54bc22a 323 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 323 44.474 T 18-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 Gene3D G3DSA:3.30.450.40 91 269 6.0E-38 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 SUPERFAMILY SSF55781 88 268 3.47E-35 T 18-10-2018 RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 Pfam PF01614 Bacterial transcriptional regulator 141 267 6.9E-35 T 18-10-2018 IPR014757 Transcription regulator IclR, C-terminal RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 Pfam PF09339 IclR helix-turn-helix domain 26 74 9.6E-17 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 SUPERFAMILY SSF46785 24 95 4.6E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 Gene3D G3DSA:1.10.10.10 8 90 2.4E-20 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_13025 3e3d37217af40dfc18aacaa7c33aef18 270 SMART SM00346 23 112 1.1E-34 T 18-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 RU84_16115 174f4aecd6a65137d5d00e493258875d 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 7.8E-28 T 18-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16115 174f4aecd6a65137d5d00e493258875d 78 Pfam PF00830 Ribosomal L28 family 3 61 1.0E-26 T 18-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16115 174f4aecd6a65137d5d00e493258875d 78 SUPERFAMILY SSF143800 2 77 5.3E-30 T 18-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16115 174f4aecd6a65137d5d00e493258875d 78 Gene3D G3DSA:2.30.170.40 2 78 6.1E-33 T 18-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16115 174f4aecd6a65137d5d00e493258875d 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.279 T 18-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_01020 828c41ee85a438bdefb7725a133ab3a5 208 Gene3D G3DSA:3.40.50.850 1 208 1.9E-59 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_01020 828c41ee85a438bdefb7725a133ab3a5 208 SUPERFAMILY SSF52499 5 201 7.98E-53 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_01020 828c41ee85a438bdefb7725a133ab3a5 208 Pfam PF00857 Isochorismatase family 14 165 2.0E-23 T 18-10-2018 IPR000868 Isochorismatase-like GO:0003824 RU84_07355 dc0383398800bb015715222babddf67e 287 Pfam PF00892 EamA-like transporter family 6 135 1.8E-15 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_07355 dc0383398800bb015715222babddf67e 287 Pfam PF00892 EamA-like transporter family 149 280 8.6E-13 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_07355 dc0383398800bb015715222babddf67e 287 SUPERFAMILY SSF103481 183 282 1.83E-8 T 18-10-2018 RU84_07355 dc0383398800bb015715222babddf67e 287 SUPERFAMILY SSF103481 41 132 3.53E-10 T 18-10-2018 RU84_08555 e957a70e293539c9bc9ffe1117324f1b 308 Pfam PF00326 Prolyl oligopeptidase family 85 138 1.1E-6 T 18-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 RU84_08555 e957a70e293539c9bc9ffe1117324f1b 308 Gene3D G3DSA:3.40.50.1820 6 290 2.9E-88 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08555 e957a70e293539c9bc9ffe1117324f1b 308 Gene3D G3DSA:1.10.10.800 141 231 2.9E-88 T 18-10-2018 RU84_08555 e957a70e293539c9bc9ffe1117324f1b 308 SUPERFAMILY SSF53474 2 308 3.15E-39 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17495 d30a8cf2053814f27f58fc45035a8e2c 384 SUPERFAMILY SSF54106 55 103 8.89E-7 T 18-10-2018 RU84_17495 d30a8cf2053814f27f58fc45035a8e2c 384 Gene3D G3DSA:3.10.350.10 56 101 3.0E-12 T 18-10-2018 IPR036779 LysM domain superfamily RU84_17495 d30a8cf2053814f27f58fc45035a8e2c 384 Pfam PF01476 LysM domain 57 102 7.7E-13 T 18-10-2018 IPR018392 LysM domain RU84_18895 75195f431f5fec239c781c7fbde48d27 414 Pfam PF04466 Phage terminase large subunit 21 192 5.8E-8 T 18-10-2018 IPR035412 Phage terminase large subunit, N-terminal RU84_18895 75195f431f5fec239c781c7fbde48d27 414 Pfam PF17289 Terminase RNaseH-like domain 243 400 1.8E-5 T 18-10-2018 IPR035421 Terminase, large subunit gp17-like RU84_18895 75195f431f5fec239c781c7fbde48d27 414 Gene3D G3DSA:3.30.420.280 216 407 1.3E-17 T 18-10-2018 RU84_18895 75195f431f5fec239c781c7fbde48d27 414 Gene3D G3DSA:3.40.50.300 2 169 1.9E-29 T 18-10-2018 RU84_18895 75195f431f5fec239c781c7fbde48d27 414 SUPERFAMILY SSF52540 7 152 2.63E-8 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15505 4720605ff6b966df5839621d2d97ad09 234 Pfam PF03358 NADPH-dependent FMN reductase 28 170 2.1E-26 T 18-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RU84_15505 4720605ff6b966df5839621d2d97ad09 234 SUPERFAMILY SSF52218 3 222 1.47E-62 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_15505 4720605ff6b966df5839621d2d97ad09 234 Gene3D G3DSA:3.40.50.360 1 234 1.2E-77 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_15505 4720605ff6b966df5839621d2d97ad09 234 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 3 220 1.5E-118 T 18-10-2018 IPR014063 Arsenate resistance ArsH RU84_02640 c5203415a807670cfe2fca03a2f5165a 204 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 202 15.843 T 18-10-2018 IPR006008 Intracellular septation protein A GO:0016021 RU84_02640 c5203415a807670cfe2fca03a2f5165a 204 Pfam PF04279 Intracellular septation protein A 1 201 2.1E-47 T 18-10-2018 IPR006008 Intracellular septation protein A GO:0016021 RU84_05425 8f4b20004c3e206d7b970f094c20fd46 383 Pfam PF00144 Beta-lactamase 36 380 8.1E-66 T 18-10-2018 IPR001466 Beta-lactamase-related RU84_05425 8f4b20004c3e206d7b970f094c20fd46 383 SUPERFAMILY SSF56601 29 381 6.86E-87 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_05425 8f4b20004c3e206d7b970f094c20fd46 383 Gene3D G3DSA:3.40.710.10 23 383 9.1E-148 T 18-10-2018 RU84_05425 8f4b20004c3e206d7b970f094c20fd46 383 ProSitePatterns PS00336 Beta-lactamase class-C active site. 84 91 - T 18-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 RU84_17955 854156a0b228d7da6b3a4ea9b69b2b26 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 336 2.0E-138 T 18-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 RU84_17955 854156a0b228d7da6b3a4ea9b69b2b26 338 Gene3D G3DSA:3.90.25.10 195 330 2.1E-137 T 18-10-2018 RU84_17955 854156a0b228d7da6b3a4ea9b69b2b26 338 SUPERFAMILY SSF51735 1 337 1.96E-95 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17955 854156a0b228d7da6b3a4ea9b69b2b26 338 Gene3D G3DSA:3.40.50.720 4 275 2.1E-137 T 18-10-2018 RU84_17955 854156a0b228d7da6b3a4ea9b69b2b26 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 325 4.7E-56 T 18-10-2018 IPR016040 NAD(P)-binding domain RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 SUPERFAMILY SSF53474 5 257 2.11E-69 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 4.2E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 4.2E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 4.2E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 4.2E-7 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 257 3.7E-91 T 18-10-2018 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 Gene3D G3DSA:3.40.50.1820 3 258 7.4E-71 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08105 da470764bd0b5afa9119f74fb91b08ab 259 Pfam PF00561 alpha/beta hydrolase fold 22 244 1.4E-27 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_01285 40eb08e68d69f740e76bbf0c2939dc09 126 SUPERFAMILY SSF81901 57 117 1.57E-12 T 18-10-2018 RU84_01285 40eb08e68d69f740e76bbf0c2939dc09 126 Gene3D G3DSA:1.25.40.10 26 125 1.8E-15 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_01285 40eb08e68d69f740e76bbf0c2939dc09 126 Pfam PF08238 Sel1 repeat 53 73 7.1 T 18-10-2018 IPR006597 Sel1-like repeat RU84_01285 40eb08e68d69f740e76bbf0c2939dc09 126 Pfam PF08238 Sel1 repeat 74 110 2.5E-8 T 18-10-2018 IPR006597 Sel1-like repeat RU84_01285 40eb08e68d69f740e76bbf0c2939dc09 126 SMART SM00671 74 110 1.9E-4 T 18-10-2018 IPR006597 Sel1-like repeat RU84_06505 e5f8692b04056b543bf2822e94930677 516 Pfam PF14403 Circularly permuted ATP-grasp type 2 115 489 1.3E-147 T 18-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 RU84_06505 e5f8692b04056b543bf2822e94930677 516 SUPERFAMILY SSF56059 66 504 7.77E-54 T 18-10-2018 RU84_06505 e5f8692b04056b543bf2822e94930677 516 PIRSF PIRSF005522 35 516 4.0E-215 T 18-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 RU84_06505 e5f8692b04056b543bf2822e94930677 516 Gene3D G3DSA:3.40.50.11290 250 348 3.8E-39 T 18-10-2018 RU84_06505 e5f8692b04056b543bf2822e94930677 516 Gene3D G3DSA:3.30.1490.270 385 445 6.7E-27 T 18-10-2018 RU84_03805 e2c503054cc84d702e50f90dc4084fd4 686 Pfam PF10136 Site-specific recombinase 26 665 6.2E-223 T 18-10-2018 IPR011385 Putative site-specific recombinase Gcr RU84_03805 e2c503054cc84d702e50f90dc4084fd4 686 PIRSF PIRSF015380 7 681 1.6E-166 T 18-10-2018 IPR011385 Putative site-specific recombinase Gcr RU84_00840 1336ad353277041199f3ad81665ff539 352 SUPERFAMILY SSF51395 1 349 9.95E-113 T 18-10-2018 RU84_00840 1336ad353277041199f3ad81665ff539 352 Gene3D G3DSA:3.20.20.70 1 352 2.1E-131 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_00840 1336ad353277041199f3ad81665ff539 352 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 328 1.5E-81 T 18-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 RU84_12730 cfa16ef0a1e00f081d102d3729860c30 445 TIGRFAM TIGR00784 citMHS: citrate transporter 1 439 1.9E-171 T 18-10-2018 IPR014738 Citrate transporter GO:0015137|GO:0015746 RU84_12730 cfa16ef0a1e00f081d102d3729860c30 445 Pfam PF03600 Citrate transporter 13 387 2.6E-50 T 18-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 RU84_18120 772ce69098e22c069c27c1ed6ae05ab1 237 SUPERFAMILY SSF53335 14 230 1.53E-50 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_18120 772ce69098e22c069c27c1ed6ae05ab1 237 Gene3D G3DSA:3.40.50.150 10 234 5.9E-78 T 18-10-2018 RU84_18120 772ce69098e22c069c27c1ed6ae05ab1 237 Pfam PF13489 Methyltransferase domain 50 203 2.3E-25 T 18-10-2018 RU84_18120 772ce69098e22c069c27c1ed6ae05ab1 237 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 10 229 7.0E-90 T 18-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 RU84_18120 772ce69098e22c069c27c1ed6ae05ab1 237 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 235 37.886 T 18-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 RU84_17480 eaef846179fa128f011f8a0cea4d5e77 704 SUPERFAMILY SSF56935 44 704 1.25E-78 T 18-10-2018 RU84_17480 eaef846179fa128f011f8a0cea4d5e77 704 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 61 704 3.1E-232 T 18-10-2018 IPR010100 TonB-dependent copper receptor RU84_17480 eaef846179fa128f011f8a0cea4d5e77 704 Gene3D G3DSA:2.40.170.20 168 704 2.2E-55 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_17480 eaef846179fa128f011f8a0cea4d5e77 704 Pfam PF00593 TonB dependent receptor 211 703 2.6E-38 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_17480 eaef846179fa128f011f8a0cea4d5e77 704 Pfam PF07715 TonB-dependent Receptor Plug Domain 67 156 3.2E-12 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_17480 eaef846179fa128f011f8a0cea4d5e77 704 Gene3D G3DSA:2.170.130.10 63 164 3.8E-11 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_18185 51666324571679e1f27f8e456973a622 377 Pfam PF03595 Voltage-dependent anion channel 17 355 1.6E-78 T 18-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 RU84_18185 51666324571679e1f27f8e456973a622 377 Gene3D G3DSA:1.50.10.150 12 366 9.1E-16 T 18-10-2018 IPR038665 Voltage-dependent anion channel superfamily RU84_00905 33c9d3536a9b53e3478b597d8548c1f2 110 Pfam PF04341 Protein of unknown function, DUF485 11 96 2.4E-30 T 18-10-2018 IPR007436 Protein of unknown function DUF485 RU84_03020 226b0dd1f18c3a9a0f8e5c54dfc79a25 160 Pfam PF06146 Phosphate-starvation-inducible E 54 122 3.7E-17 T 18-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like RU84_03020 226b0dd1f18c3a9a0f8e5c54dfc79a25 160 PIRSF PIRSF029598 2 140 7.6E-34 T 18-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 RU84_12105 e05f19e4dd825d282f2bb51a34467a2e 704 SUPERFAMILY SSF56935 29 704 1.15E-138 T 18-10-2018 RU84_12105 e05f19e4dd825d282f2bb51a34467a2e 704 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 161 1.9E-20 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_12105 e05f19e4dd825d282f2bb51a34467a2e 704 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 704 2.5E-105 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_12105 e05f19e4dd825d282f2bb51a34467a2e 704 Pfam PF00593 TonB dependent receptor 255 703 8.3E-63 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_12105 e05f19e4dd825d282f2bb51a34467a2e 704 Gene3D G3DSA:2.170.130.10 43 171 1.9E-32 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_12105 e05f19e4dd825d282f2bb51a34467a2e 704 Gene3D G3DSA:2.40.170.20 172 704 2.8E-130 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 SMART SM00829 15 336 4.3E-8 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 Gene3D G3DSA:3.90.180.10 15 336 3.8E-112 T 18-10-2018 RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 SUPERFAMILY SSF51735 143 306 1.18E-37 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 SUPERFAMILY SSF50129 8 164 2.43E-42 T 18-10-2018 IPR011032 GroES-like superfamily RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 Pfam PF00107 Zinc-binding dehydrogenase 180 302 3.3E-22 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 173 200 - T 18-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 Gene3D G3DSA:3.40.50.720 154 308 3.8E-112 T 18-10-2018 RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 137 6.8E-25 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_00230 f7fab2ca05e27b3ccc7e8c3648d5fbc0 342 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 18-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RU84_04525 637a592bf154c04d003fbe3631e84cbe 204 Gene3D G3DSA:1.10.10.10 119 195 1.9E-17 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_04525 637a592bf154c04d003fbe3631e84cbe 204 Pfam PF08281 Sigma-70, region 4 136 185 8.3E-16 T 18-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 RU84_04525 637a592bf154c04d003fbe3631e84cbe 204 Pfam PF04542 Sigma-70 region 2 45 95 1.4E-5 T 18-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 RU84_04525 637a592bf154c04d003fbe3631e84cbe 204 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 43 192 2.4E-21 T 18-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 RU84_04525 637a592bf154c04d003fbe3631e84cbe 204 SUPERFAMILY SSF88659 105 194 1.27E-16 T 18-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like RU84_04525 637a592bf154c04d003fbe3631e84cbe 204 SUPERFAMILY SSF88946 42 97 2.47E-7 T 18-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 RU84_17200 f0088cfeabeffe5df173e6612dd0553a 340 Gene3D G3DSA:3.40.710.10 79 335 4.3E-67 T 18-10-2018 RU84_17200 f0088cfeabeffe5df173e6612dd0553a 340 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 122 133 1.5E-12 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_17200 f0088cfeabeffe5df173e6612dd0553a 340 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 174 191 1.5E-12 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_17200 f0088cfeabeffe5df173e6612dd0553a 340 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 201 214 1.5E-12 T 18-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 RU84_17200 f0088cfeabeffe5df173e6612dd0553a 340 SUPERFAMILY SSF56601 85 333 1.72E-57 T 18-10-2018 IPR012338 Beta-lactamase/transpeptidase-like RU84_17200 f0088cfeabeffe5df173e6612dd0553a 340 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 90 316 5.6E-60 T 18-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 RU84_08440 f9176862ab2d27e3d47373765b9c76f1 338 SUPERFAMILY SSF81345 8 330 5.49E-70 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_08440 f9176862ab2d27e3d47373765b9c76f1 338 Gene3D G3DSA:1.10.3470.10 7 337 7.3E-88 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_08440 f9176862ab2d27e3d47373765b9c76f1 338 Pfam PF01032 FecCD transport family 17 330 1.1E-76 T 18-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RU84_11460 172801e9930a6a36abcca0c3845b06ed 141 SUPERFAMILY SSF55729 2 136 2.62E-24 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_11460 172801e9930a6a36abcca0c3845b06ed 141 Pfam PF00583 Acetyltransferase (GNAT) family 32 128 5.8E-13 T 18-10-2018 IPR000182 GNAT domain RU84_11460 172801e9930a6a36abcca0c3845b06ed 141 Gene3D G3DSA:3.40.630.30 1 140 2.2E-29 T 18-10-2018 RU84_09440 033db51cf5c4de89c9d708a82cbd20cd 260 PIRSF PIRSF009320 2 84 2.4E-15 T 18-10-2018 RU84_09440 033db51cf5c4de89c9d708a82cbd20cd 260 PIRSF PIRSF009320 85 259 2.3E-9 T 18-10-2018 RU84_09440 033db51cf5c4de89c9d708a82cbd20cd 260 Gene3D G3DSA:3.40.50.300 1 259 4.6E-81 T 18-10-2018 RU84_09440 033db51cf5c4de89c9d708a82cbd20cd 260 SUPERFAMILY SSF52540 1 252 3.65E-65 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09440 033db51cf5c4de89c9d708a82cbd20cd 260 Pfam PF13614 AAA domain 3 177 3.4E-61 T 18-10-2018 IPR025669 AAA domain RU84_09215 89add2ce7c62f165e69143b7c58e45cf 88 Pfam PF01649 Ribosomal protein S20 2 84 1.5E-26 T 18-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_09215 89add2ce7c62f165e69143b7c58e45cf 88 Gene3D G3DSA:1.20.58.110 1 87 3.8E-28 T 18-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_09215 89add2ce7c62f165e69143b7c58e45cf 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 86 3.2E-27 T 18-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_09215 89add2ce7c62f165e69143b7c58e45cf 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.746 T 18-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_09215 89add2ce7c62f165e69143b7c58e45cf 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 88 5.0E-35 T 18-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_09215 89add2ce7c62f165e69143b7c58e45cf 88 SUPERFAMILY SSF46992 3 86 2.22E-31 T 18-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_09065 4e2c5fd4cf18e78c49ab8f3dcc68623f 613 Gene3D G3DSA:1.10.510.40 394 613 6.7E-69 T 18-10-2018 RU84_09065 4e2c5fd4cf18e78c49ab8f3dcc68623f 613 Pfam PF06276 Ferric iron reductase FhuF-like transporter 425 594 1.1E-34 T 18-10-2018 IPR022770 Ferric iron reductase FhuF domain RU84_09065 4e2c5fd4cf18e78c49ab8f3dcc68623f 613 Pfam PF04183 IucA / IucC family 158 403 3.3E-73 T 18-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 SUPERFAMILY SSF53681 22 125 1.44E-34 T 18-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 Hamap MF_00258 Glutamate racemase [murI]. 21 276 33.984 T 18-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 Pfam PF01177 Asp/Glu/Hydantoin racemase 23 235 4.6E-29 T 18-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 87 95 - T 18-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 TIGRFAM TIGR00067 glut_race: glutamate racemase 23 264 4.0E-65 T 18-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 SUPERFAMILY SSF53681 127 267 3.49E-29 T 18-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 200 210 - T 18-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 Gene3D G3DSA:3.40.50.1860 114 227 1.2E-75 T 18-10-2018 RU84_16510 7eaa5ccae2610c96036cfe060fbdc37d 288 Gene3D G3DSA:3.40.50.1860 22 263 1.2E-75 T 18-10-2018 RU84_06780 14f3208f92d200465f33f135c0d69241 264 Pfam PF10670 Domain of unknown function (DUF4198) 17 241 5.2E-17 T 18-10-2018 IPR019613 Protein of unknown function DUF4198 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 Gene3D G3DSA:3.20.20.70 1 241 2.3E-76 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 309 49.438 T 18-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 18-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 Gene3D G3DSA:1.20.225.30 245 313 1.9E-10 T 18-10-2018 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 SUPERFAMILY SSF51395 2 309 2.01E-69 T 18-10-2018 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 PIRSF PIRSF006621 1 314 2.6E-77 T 18-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_14580 6cd852cd7e6bb7c7d80c589f105fd60a 314 Pfam PF01207 Dihydrouridine synthase (Dus) 4 309 1.7E-73 T 18-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 RU84_16235 73df860a81675bbec1e9de87a419f958 323 PIRSF PIRSF500176 1 306 1.8E-38 T 18-10-2018 RU84_16235 73df860a81675bbec1e9de87a419f958 323 SUPERFAMILY SSF53774 1 322 2.36E-61 T 18-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 PRINTS PR00139 Asparaginase/glutaminase family signature 253 271 2.5E-5 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 PRINTS PR00139 Asparaginase/glutaminase family signature 77 95 2.5E-5 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 2.5E-5 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 Gene3D G3DSA:3.40.50.40 208 323 8.6E-12 T 18-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 Gene3D G3DSA:3.40.50.1170 1 202 2.6E-36 T 18-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 Pfam PF00710 Asparaginase, N-terminal 3 174 3.1E-33 T 18-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 PIRSF PIRSF001220 1 313 7.5E-33 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_16235 73df860a81675bbec1e9de87a419f958 323 SMART SM00870 3 315 2.3E-24 T 18-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 RU84_06290 cb5f79a19077701c30a17145bb0547b8 69 Gene3D G3DSA:3.30.429.10 1 62 2.2E-15 T 18-10-2018 IPR014347 Tautomerase/MIF superfamily RU84_06290 cb5f79a19077701c30a17145bb0547b8 69 Pfam PF14552 Tautomerase enzyme 2 53 2.3E-14 T 18-10-2018 IPR037479 Tautomerase, MSAD family RU84_06290 cb5f79a19077701c30a17145bb0547b8 69 SUPERFAMILY SSF55331 2 56 8.32E-12 T 18-10-2018 IPR014347 Tautomerase/MIF superfamily RU84_00640 d16798e484f5af228bae40300d1c2d00 455 TIGRFAM TIGR03173 pbuX: xanthine permease 24 432 5.3E-154 T 18-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 RU84_00640 d16798e484f5af228bae40300d1c2d00 455 Pfam PF00860 Permease family 20 395 2.9E-89 T 18-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RU84_00640 d16798e484f5af228bae40300d1c2d00 455 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 347 367 - T 18-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RU84_00640 d16798e484f5af228bae40300d1c2d00 455 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 20 430 1.5E-108 T 18-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RU84_12160 4914f273a3c53b72b1d37f656325a8ac 235 Pfam PF04972 BON domain 124 186 0.0067 T 18-10-2018 IPR007055 BON domain RU84_12160 4914f273a3c53b72b1d37f656325a8ac 235 Pfam PF04972 BON domain 60 113 4.6E-11 T 18-10-2018 IPR007055 BON domain RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PIRSF PIRSF038927 4 710 0.0 T 18-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 375 383 - T 18-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 SUPERFAMILY SSF52317 559 708 6.52E-12 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 Pfam PF00199 Catalase 45 430 4.2E-178 T 18-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 Gene3D G3DSA:2.40.180.10 2 457 1.0E-214 T 18-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 Gene3D G3DSA:1.20.1370.20 460 560 8.7E-34 T 18-10-2018 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PRINTS PR00067 Catalase signature 58 81 3.6E-69 T 18-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PRINTS PR00067 Catalase signature 330 357 3.6E-69 T 18-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PRINTS PR00067 Catalase signature 161 179 3.6E-69 T 18-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PRINTS PR00067 Catalase signature 121 139 3.6E-69 T 18-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PRINTS PR00067 Catalase signature 362 388 3.6E-69 T 18-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 PRINTS PR00067 Catalase signature 142 159 3.6E-69 T 18-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 Gene3D G3DSA:3.40.50.880 561 712 2.7E-30 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 SMART SM01060 45 433 2.9E-270 T 18-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 Pfam PF06628 Catalase-related immune-responsive 462 527 8.7E-19 T 18-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_10320 e6eb72ae392c8eae1f120c3b0c2647e6 712 SUPERFAMILY SSF56634 22 545 1.16E-222 T 18-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 RU84_16750 1fb12965cceb24b5f329f40d520a3168 109 Pfam PF03840 Preprotein translocase SecG subunit 4 72 1.2E-21 T 18-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RU84_16750 1fb12965cceb24b5f329f40d520a3168 109 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 8.0E-36 T 18-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RU84_16750 1fb12965cceb24b5f329f40d520a3168 109 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 8.0E-36 T 18-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RU84_16750 1fb12965cceb24b5f329f40d520a3168 109 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 8.0E-36 T 18-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RU84_16750 1fb12965cceb24b5f329f40d520a3168 109 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 8.0E-36 T 18-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RU84_16750 1fb12965cceb24b5f329f40d520a3168 109 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 6.9E-26 T 18-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 2.9E-22 T 18-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 2.9E-22 T 18-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 2.9E-22 T 18-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 PRINTS PR01703 Manganese superoxide dismutase signature 71 84 2.9E-22 T 18-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 2.9E-22 T 18-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 PIRSF PIRSF000349 1 206 4.6E-83 T 18-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 SUPERFAMILY SSF54719 90 199 4.45E-43 T 18-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 Gene3D G3DSA:1.10.287.990 21 87 1.7E-25 T 18-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 Gene3D G3DSA:2.40.500.20 88 204 5.6E-42 T 18-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 197 4.4E-37 T 18-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 SUPERFAMILY SSF46609 3 89 2.09E-36 T 18-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 5 88 1.8E-33 T 18-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_05535 296816e12a0cc196b4c074ba6a52c2e7 208 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 18-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 RU84_12065 1cf14bffc91d86b8fd1de4fa15ed107a 404 Gene3D G3DSA:3.30.160.390 8 97 3.7E-27 T 18-10-2018 IPR038488 Integrase, DNA-binding domain superfamily RU84_12065 1cf14bffc91d86b8fd1de4fa15ed107a 404 Pfam PF00589 Phage integrase family 238 367 6.5E-10 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_12065 1cf14bffc91d86b8fd1de4fa15ed107a 404 Gene3D G3DSA:1.10.150.130 98 209 1.8E-20 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_12065 1cf14bffc91d86b8fd1de4fa15ed107a 404 SUPERFAMILY SSF56349 107 390 1.84E-42 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_12065 1cf14bffc91d86b8fd1de4fa15ed107a 404 Gene3D G3DSA:1.10.443.10 219 391 1.3E-10 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_12065 1cf14bffc91d86b8fd1de4fa15ed107a 404 Pfam PF13356 Arm DNA-binding domain 9 95 1.0E-18 T 18-10-2018 IPR025166 Integrase, DNA-binding domain RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 Pfam PF00561 alpha/beta hydrolase fold 34 131 6.5E-21 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 116 129 4.9E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 217 231 4.9E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 57 72 4.9E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 PRINTS PR00111 Alpha/beta hydrolase fold signature 102 115 4.9E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 SUPERFAMILY SSF53474 5 268 1.29E-56 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_12980 bea15eded3ae1550f3cdf6de63344dd8 274 Gene3D G3DSA:3.40.50.1820 4 273 7.8E-55 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00265 9dc94c69d073c05fd9ba2a9026166a5a 52 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 3.1E-10 T 18-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 RU84_00265 9dc94c69d073c05fd9ba2a9026166a5a 52 PIRSF PIRSF036466 1 52 5.1E-19 T 18-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 RU84_00265 9dc94c69d073c05fd9ba2a9026166a5a 52 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 51 17.701 T 18-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 RU84_08180 cf00abb76439dbd91328e59fcef24c1d 276 Gene3D G3DSA:3.40.50.1820 1 275 8.0E-91 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08180 cf00abb76439dbd91328e59fcef24c1d 276 Pfam PF00561 alpha/beta hydrolase fold 24 256 4.1E-26 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08180 cf00abb76439dbd91328e59fcef24c1d 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 6.5E-10 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08180 cf00abb76439dbd91328e59fcef24c1d 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 6.5E-10 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08180 cf00abb76439dbd91328e59fcef24c1d 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 6.5E-10 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08180 cf00abb76439dbd91328e59fcef24c1d 276 SUPERFAMILY SSF53474 1 276 2.52E-65 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05750 00648fc8b28dc509a940288c50426eed 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 219 4.5E-25 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_05750 00648fc8b28dc509a940288c50426eed 229 SUPERFAMILY SSF161098 8 206 1.96E-42 T 18-10-2018 IPR035906 MetI-like superfamily RU84_05750 00648fc8b28dc509a940288c50426eed 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 115 6.1E-20 T 18-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RU84_05750 00648fc8b28dc509a940288c50426eed 229 Gene3D G3DSA:1.10.3720.10 2 223 8.2E-53 T 18-10-2018 IPR035906 MetI-like superfamily RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 Gene3D G3DSA:3.40.50.790 68 159 4.0E-76 T 18-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 PIRSF PIRSF002155 1 227 9.9E-75 T 18-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 Gene3D G3DSA:3.30.190.20 21 225 4.0E-76 T 18-10-2018 RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 18-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.091 T 18-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 Pfam PF00687 Ribosomal protein L1p/L10e family 35 220 1.0E-49 T 18-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.8E-100 T 18-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 RU84_16975 fb030f1fb018c18ee3c02781427c724f 231 SUPERFAMILY SSF56808 6 227 3.92E-79 T 18-10-2018 IPR023674 Ribosomal protein L1-like RU84_18170 7afad4f3e889c9d9398fc09f096a7e62 266 Pfam PF00005 ABC transporter 47 183 3.0E-32 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_18170 7afad4f3e889c9d9398fc09f096a7e62 266 SUPERFAMILY SSF52540 32 253 6.8E-66 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18170 7afad4f3e889c9d9398fc09f096a7e62 266 Gene3D G3DSA:3.40.50.300 32 262 1.6E-63 T 18-10-2018 RU84_18170 7afad4f3e889c9d9398fc09f096a7e62 266 SMART SM00382 56 233 1.2E-17 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_01935 a46728c88bba9bc2d14b95afbc9a88b0 211 SUPERFAMILY SSF53271 51 205 2.36E-22 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_01935 a46728c88bba9bc2d14b95afbc9a88b0 211 Pfam PF00156 Phosphoribosyl transferase domain 116 208 3.8E-8 T 18-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 RU84_01935 a46728c88bba9bc2d14b95afbc9a88b0 211 Gene3D G3DSA:3.40.50.2020 60 210 2.2E-16 T 18-10-2018 RU84_00065 5e40526c55cf8e790d73cad3cf5da5db 375 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 373 6.4E-134 T 18-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 RU84_00065 5e40526c55cf8e790d73cad3cf5da5db 375 Gene3D G3DSA:3.30.420.40 140 335 2.2E-125 T 18-10-2018 RU84_00065 5e40526c55cf8e790d73cad3cf5da5db 375 SUPERFAMILY SSF53067 4 347 4.66E-24 T 18-10-2018 RU84_00065 5e40526c55cf8e790d73cad3cf5da5db 375 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 375 40.396 T 18-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 RU84_00065 5e40526c55cf8e790d73cad3cf5da5db 375 Gene3D G3DSA:3.30.420.40 11 370 2.2E-125 T 18-10-2018 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 Gene3D G3DSA:3.20.20.70 152 299 2.9E-27 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 Pfam PF02581 Thiamine monophosphate synthase 160 298 3.9E-18 T 18-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 PRINTS PR00502 NUDIX hydrolase family signature 34 48 4.7E-7 T 18-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 PRINTS PR00502 NUDIX hydrolase family signature 48 63 4.7E-7 T 18-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 SUPERFAMILY SSF55811 3 126 3.52E-29 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 Gene3D G3DSA:3.90.79.10 3 128 1.2E-27 T 18-10-2018 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 SUPERFAMILY SSF51391 149 298 4.71E-23 T 18-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_05830 d52eb6c76ad9bd3f10729a6acf65a65b 299 Pfam PF00293 NUDIX domain 8 125 3.3E-16 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_00910 0532c53f6f8c3c0e5912f40afb4541e0 571 Pfam PF00474 Sodium:solute symporter family 68 489 4.5E-112 T 18-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RU84_00910 0532c53f6f8c3c0e5912f40afb4541e0 571 Gene3D G3DSA:1.20.1730.10 56 568 2.4E-62 T 18-10-2018 IPR038377 Sodium/glucose symporter superfamily RU84_00910 0532c53f6f8c3c0e5912f40afb4541e0 571 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 489 1.1E-62 T 18-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 RU84_00910 0532c53f6f8c3c0e5912f40afb4541e0 571 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 183 208 - T 18-10-2018 IPR018212 Sodium/solute symporter, conserved site RU84_07990 fcbad166b591e0ef2e9f4ac61d9e350a 288 SUPERFAMILY SSF56281 9 288 6.77E-43 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_07990 fcbad166b591e0ef2e9f4ac61d9e350a 288 Gene3D G3DSA:3.60.15.10 2 288 9.6E-102 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_07990 fcbad166b591e0ef2e9f4ac61d9e350a 288 Pfam PF00753 Metallo-beta-lactamase superfamily 15 205 3.1E-20 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_07990 fcbad166b591e0ef2e9f4ac61d9e350a 288 SMART SM00849 15 205 3.6E-21 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_15200 3463d26f2d412513d96f78d859195c81 145 SMART SM00347 31 130 9.9E-24 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_15200 3463d26f2d412513d96f78d859195c81 145 SUPERFAMILY SSF46785 10 120 4.74E-32 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_15200 3463d26f2d412513d96f78d859195c81 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 3.3E-5 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_15200 3463d26f2d412513d96f78d859195c81 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 3.3E-5 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_15200 3463d26f2d412513d96f78d859195c81 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 3.3E-5 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_15200 3463d26f2d412513d96f78d859195c81 145 Pfam PF01047 MarR family 38 96 5.2E-16 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_15200 3463d26f2d412513d96f78d859195c81 145 Gene3D G3DSA:1.10.10.10 1 144 1.8E-35 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_15950 52af454df48d20b2252f74ce1065d030 508 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 486 7.4E-49 T 18-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RU84_15950 52af454df48d20b2252f74ce1065d030 508 Gene3D G3DSA:3.20.130.10 305 487 1.8E-61 T 18-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RU84_15950 52af454df48d20b2252f74ce1065d030 508 PIRSF PIRSF001394 1 505 9.7E-212 T 18-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 RU84_15950 52af454df48d20b2252f74ce1065d030 508 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 14 285 1.1E-68 T 18-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RU84_15950 52af454df48d20b2252f74ce1065d030 508 Pfam PF05681 Fumarate hydratase (Fumerase) 13 285 2.8E-102 T 18-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 RU84_15950 52af454df48d20b2252f74ce1065d030 508 SUPERFAMILY SSF117457 316 486 3.4E-64 T 18-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 RU84_15950 52af454df48d20b2252f74ce1065d030 508 Pfam PF05683 Fumarase C-terminus 289 487 4.7E-78 T 18-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 RU84_08970 ced6f7bb415e85fee367a002c7f189d8 518 Pfam PF03929 PepSY-associated TM region 10 358 5.6E-57 T 18-10-2018 IPR005625 PepSY-associated TM protein RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 Gene3D G3DSA:2.170.130.10 39 180 8.2E-44 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 737 754 - T 18-10-2018 IPR010917 TonB-dependent receptor, conserved site RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 SUPERFAMILY SSF56935 46 754 1.31E-125 T 18-10-2018 RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 Pfam PF00593 TonB dependent receptor 293 753 1.4E-52 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 58 754 2.5E-68 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 175 2.5E-28 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_12845 eaeb4cca0f413c3c5a61f64dfe4d4f2b 754 Gene3D G3DSA:2.40.170.20 186 754 1.4E-182 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_07900 c9ca221d0673afaa9801b95c5c34816d 129 Pfam PF04977 Septum formation initiator 20 97 2.2E-23 T 18-10-2018 IPR007060 Septum formation initiator FtsL/DivIC RU84_07900 c9ca221d0673afaa9801b95c5c34816d 129 Hamap MF_00599 Cell division protein FtsB [ftsB]. 11 99 27.581 T 18-10-2018 IPR023081 Cell division protein FtsB RU84_00245 198134f5af07bb44f5fd820162a3c64a 178 SUPERFAMILY SSF51261 44 177 2.2E-33 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_00245 198134f5af07bb44f5fd820162a3c64a 178 Pfam PF01551 Peptidase family M23 72 166 3.6E-23 T 18-10-2018 IPR016047 Peptidase M23 RU84_00245 198134f5af07bb44f5fd820162a3c64a 178 Gene3D G3DSA:2.70.70.10 28 178 5.7E-47 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_03005 cea26bf1908a388925e787ab8998da29 487 Gene3D G3DSA:3.30.870.10 300 458 2.9E-27 T 18-10-2018 RU84_03005 cea26bf1908a388925e787ab8998da29 487 Pfam PF13091 PLD-like domain 311 450 1.7E-21 T 18-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 RU84_03005 cea26bf1908a388925e787ab8998da29 487 SUPERFAMILY SSF56024 72 268 1.08E-18 T 18-10-2018 RU84_03005 cea26bf1908a388925e787ab8998da29 487 SUPERFAMILY SSF56024 303 449 1.54E-19 T 18-10-2018 RU84_15070 2a6402da9bc2e04f62ea13a36e6612dc 182 SUPERFAMILY SSF55811 3 163 7.04E-36 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_15070 2a6402da9bc2e04f62ea13a36e6612dc 182 Pfam PF00293 NUDIX domain 43 141 6.1E-10 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_15070 2a6402da9bc2e04f62ea13a36e6612dc 182 Gene3D G3DSA:2.20.70.10 1 35 2.5E-12 T 18-10-2018 RU84_15070 2a6402da9bc2e04f62ea13a36e6612dc 182 Gene3D G3DSA:3.90.79.10 36 180 4.2E-37 T 18-10-2018 RU84_15070 2a6402da9bc2e04f62ea13a36e6612dc 182 Pfam PF14803 Nudix N-terminal 3 35 6.5E-14 T 18-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 RU84_05735 28459c8c1653081397eb0e6582a18060 405 SUPERFAMILY SSF111369 59 299 3.66E-69 T 18-10-2018 RU84_05735 28459c8c1653081397eb0e6582a18060 405 Gene3D G3DSA:2.40.30.170 57 304 1.8E-101 T 18-10-2018 RU84_05735 28459c8c1653081397eb0e6582a18060 405 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 294 6.6E-17 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_05735 28459c8c1653081397eb0e6582a18060 405 Gene3D G3DSA:2.40.50.100 70 215 1.8E-101 T 18-10-2018 RU84_05735 28459c8c1653081397eb0e6582a18060 405 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 375 5.4E-87 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_05735 28459c8c1653081397eb0e6582a18060 405 Gene3D G3DSA:1.10.287.470 105 178 1.8E-101 T 18-10-2018 RU84_05735 28459c8c1653081397eb0e6582a18060 405 Gene3D G3DSA:2.40.420.20 305 373 1.8E-101 T 18-10-2018 RU84_14105 ad55647f97471f103a6e3b8144caf643 196 Pfam PF04586 Caudovirus prohead serine protease 50 160 1.6E-7 T 18-10-2018 IPR006433 Prohead protease RU84_03155 e236e0a2c30ae2c18109b125ea41ad6a 436 Gene3D G3DSA:1.20.1250.20 16 435 1.9E-64 T 18-10-2018 RU84_03155 e236e0a2c30ae2c18109b125ea41ad6a 436 ProSitePatterns PS00216 Sugar transport proteins signature 1. 301 316 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_03155 e236e0a2c30ae2c18109b125ea41ad6a 436 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 27 418 4.1E-138 T 18-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 RU84_03155 e236e0a2c30ae2c18109b125ea41ad6a 436 Pfam PF00083 Sugar (and other) transporter 258 431 1.3E-6 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_03155 e236e0a2c30ae2c18109b125ea41ad6a 436 Pfam PF00083 Sugar (and other) transporter 22 228 2.0E-23 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_03155 e236e0a2c30ae2c18109b125ea41ad6a 436 SUPERFAMILY SSF103473 16 432 3.27E-63 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_11330 f209f411708b83fd2c6f0d146f8b8f48 397 Pfam PF03594 Benzoate membrane transport protein 11 387 2.9E-158 T 18-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RU84_11330 f209f411708b83fd2c6f0d146f8b8f48 397 TIGRFAM TIGR00843 benE: benzoate transporter 1 388 1.7E-185 T 18-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 RU84_04615 3994649528c07f14c655c0a64927cd30 266 SUPERFAMILY SSF52096 9 264 3.5E-67 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_04615 3994649528c07f14c655c0a64927cd30 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 264 6.4E-44 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_04615 3994649528c07f14c655c0a64927cd30 266 Gene3D G3DSA:3.90.226.10 10 192 6.8E-64 T 18-10-2018 RU84_04615 3994649528c07f14c655c0a64927cd30 266 Gene3D G3DSA:1.10.12.10 210 255 4.0E-32 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_19180 ba7ce6b375a0b0e141abb0290ee3c304 459 Pfam PF03743 Bacterial conjugation TrbI-like protein 275 453 1.4E-51 T 18-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI RU84_19180 ba7ce6b375a0b0e141abb0290ee3c304 459 Gene3D G3DSA:2.40.128.260 278 451 3.2E-52 T 18-10-2018 RU84_19180 ba7ce6b375a0b0e141abb0290ee3c304 459 Gene3D G3DSA:1.10.1200.160 399 432 3.2E-52 T 18-10-2018 RU84_12770 74bcd1db35263b2b7c77c73b25035448 145 Gene3D G3DSA:3.30.530.20 2 145 1.0E-19 T 18-10-2018 IPR023393 START-like domain superfamily RU84_12770 74bcd1db35263b2b7c77c73b25035448 145 SUPERFAMILY SSF55961 2 139 1.4E-21 T 18-10-2018 RU84_12770 74bcd1db35263b2b7c77c73b25035448 145 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 11 122 4.9E-10 T 18-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RU84_15405 8097fa6f1868208b078042e91dc353f4 272 SUPERFAMILY SSF53098 4 221 3.8E-34 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_15405 8097fa6f1868208b078042e91dc353f4 272 Gene3D G3DSA:3.30.420.10 5 213 6.7E-20 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_15405 8097fa6f1868208b078042e91dc353f4 272 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 47 253 3.4E-73 T 18-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 Gene3D G3DSA:2.40.50.620 34 95 1.0E-15 T 18-10-2018 RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.688 T 18-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 207 4.6E-86 T 18-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 ProSitePatterns PS00474 Ribosomal protein L3 signature. 104 127 - T 18-10-2018 IPR019926 Ribosomal protein L3, conserved site RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 Pfam PF00297 Ribosomal protein L3 51 185 3.1E-14 T 18-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 Gene3D G3DSA:2.40.30.10 132 212 2.4E-14 T 18-10-2018 RU84_02010 cd2aaa5092bf4460911188f6f169176b 212 SUPERFAMILY SSF50447 2 211 6.62E-78 T 18-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily RU84_10685 df89637ed864caeadb58e6c65878747e 189 SUPERFAMILY SSF46689 12 69 2.92E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_10685 df89637ed864caeadb58e6c65878747e 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.8E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10685 df89637ed864caeadb58e6c65878747e 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.8E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10685 df89637ed864caeadb58e6c65878747e 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 3.8E-11 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10685 df89637ed864caeadb58e6c65878747e 189 Gene3D G3DSA:1.10.357.10 8 185 2.8E-20 T 18-10-2018 RU84_08195 4a644191d0ebab1758af723278c99465 268 Gene3D G3DSA:3.40.50.880 14 267 3.2E-72 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_08195 4a644191d0ebab1758af723278c99465 268 SUPERFAMILY SSF52317 40 264 2.03E-65 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_08195 4a644191d0ebab1758af723278c99465 268 Pfam PF01965 DJ-1/PfpI family 64 262 1.0E-10 T 18-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RU84_05755 0663087654001b229a7252d396cf31b1 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 228 1.7E-17 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_05755 0663087654001b229a7252d396cf31b1 237 Gene3D G3DSA:1.10.3720.10 9 229 1.1E-43 T 18-10-2018 IPR035906 MetI-like superfamily RU84_05755 0663087654001b229a7252d396cf31b1 237 SUPERFAMILY SSF161098 17 220 1.44E-34 T 18-10-2018 IPR035906 MetI-like superfamily RU84_05755 0663087654001b229a7252d396cf31b1 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 20 122 8.9E-15 T 18-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 RU84_01385 ee6776eec5fa6b984495f148f1e630e2 333 Gene3D G3DSA:3.40.190.10 29 297 8.6E-134 T 18-10-2018 RU84_01385 ee6776eec5fa6b984495f148f1e630e2 333 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 18 328 7.1E-142 T 18-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 RU84_01385 ee6776eec5fa6b984495f148f1e630e2 333 Gene3D G3DSA:3.40.190.10 116 327 8.6E-134 T 18-10-2018 RU84_01385 ee6776eec5fa6b984495f148f1e630e2 333 Pfam PF13531 Bacterial extracellular solute-binding protein 43 282 3.4E-43 T 18-10-2018 RU84_01385 ee6776eec5fa6b984495f148f1e630e2 333 SUPERFAMILY SSF53850 22 329 1.49E-87 T 18-10-2018 RU84_17665 12a074a44e2e5f9d44e39444b4e5772c 409 Pfam PF04286 Protein of unknown function (DUF445) 223 342 6.0E-10 T 18-10-2018 IPR007383 Protein of unknown function DUF445 RU84_10615 e9d84a2893d0be4da6d493565c74c265 468 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 21 439 9.7E-44 T 18-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 RU84_10615 e9d84a2893d0be4da6d493565c74c265 468 PIRSF PIRSF002744 1 457 1.2E-98 T 18-10-2018 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 RU84_10615 e9d84a2893d0be4da6d493565c74c265 468 Gene3D G3DSA:1.10.4160.10 5 454 1.7E-35 T 18-10-2018 IPR038271 Purine-cytosine permease superfamily RU84_14075 e618c03ab97679fd9ec4467fcedd84f5 120 Pfam PF11367 Protein of unknown function (DUF3168) 6 93 5.2E-14 T 18-10-2018 IPR021508 Tail completion protein RU84_07225 3745d1f453505714325a1bd898e92398 445 Pfam PF03929 PepSY-associated TM region 15 380 7.9E-58 T 18-10-2018 IPR005625 PepSY-associated TM protein RU84_04685 076b910e80772b2335ddd405cb17fa92 202 Pfam PF06821 Serine hydrolase 4 177 2.1E-52 T 18-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 RU84_04685 076b910e80772b2335ddd405cb17fa92 202 SUPERFAMILY SSF53474 3 179 2.15E-32 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_04685 076b910e80772b2335ddd405cb17fa92 202 Gene3D G3DSA:3.40.50.1820 1 181 5.0E-47 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 25 1.8E-9 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 Gene3D G3DSA:3.30.700.10 5 138 2.9E-21 T 18-10-2018 RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 SUPERFAMILY SSF54523 5 122 4.55E-22 T 18-10-2018 RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 40 58 6.4E-10 T 18-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 4 29 6.4E-10 T 18-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 24 1.2E-7 T 18-10-2018 IPR012902 Prokaryotic N-terminal methylation site RU84_01585 e887ef8fa34c1abe35b7c68763bde04b 141 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 26 115 1.0E-14 T 18-10-2018 IPR031982 Type IV minor pilin ComP RU84_09905 2c3b651a8a46778b29827e92133ae6eb 139 SUPERFAMILY SSF51316 4 138 2.25E-59 T 18-10-2018 IPR011057 Mss4-like superfamily RU84_09905 2c3b651a8a46778b29827e92133ae6eb 139 Pfam PF01641 SelR domain 10 128 3.9E-55 T 18-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RU84_09905 2c3b651a8a46778b29827e92133ae6eb 139 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 138 1.8E-56 T 18-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RU84_09905 2c3b651a8a46778b29827e92133ae6eb 139 Gene3D G3DSA:2.170.150.20 2 139 1.4E-62 T 18-10-2018 RU84_09905 2c3b651a8a46778b29827e92133ae6eb 139 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 36.983 T 18-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 RU84_10370 e23a02b0dd84d9d6f4b2beaa3bc32c05 412 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 203 398 1.3E-21 T 18-10-2018 IPR013830 SGNH hydrolase-type esterase domain RU84_10370 e23a02b0dd84d9d6f4b2beaa3bc32c05 412 Gene3D G3DSA:3.40.50.1110 164 412 3.2E-31 T 18-10-2018 IPR036514 SGNH hydrolase superfamily RU84_10370 e23a02b0dd84d9d6f4b2beaa3bc32c05 412 SUPERFAMILY SSF52266 192 404 4.0E-45 T 18-10-2018 RU84_00565 a85c27382e7f3765a239923e3f375dcc 525 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 525 187.104 T 18-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RU84_00565 a85c27382e7f3765a239923e3f375dcc 525 Pfam PF04262 Glutamate-cysteine ligase 18 388 1.3E-143 T 18-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RU84_00565 a85c27382e7f3765a239923e3f375dcc 525 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 18 523 2.3E-157 T 18-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 RU84_00565 a85c27382e7f3765a239923e3f375dcc 525 SUPERFAMILY SSF55931 10 521 2.29E-177 T 18-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 RU84_00565 a85c27382e7f3765a239923e3f375dcc 525 Gene3D G3DSA:3.30.590.20 19 525 2.4E-174 T 18-10-2018 RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 Gene3D G3DSA:3.40.190.290 95 300 3.7E-46 T 18-10-2018 RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 SUPERFAMILY SSF53850 95 298 1.49E-38 T 18-10-2018 RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 Gene3D G3DSA:1.10.10.10 1 84 7.2E-22 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 SUPERFAMILY SSF46785 3 91 2.47E-18 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 Pfam PF03466 LysR substrate binding domain 92 296 9.2E-44 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 67 2.8E-17 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.2E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.2E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_10175 13f373e052c401b4ce0f7b8f8c859e96 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.2E-7 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_06360 6fd510c1dec540f3c46ff847dfa69bdd 259 Pfam PF06966 Protein of unknown function (DUF1295) 17 249 1.4E-56 T 18-10-2018 IPR010721 Protein of unknown function DUF1295 RU84_06360 6fd510c1dec540f3c46ff847dfa69bdd 259 Gene3D G3DSA:1.20.120.1630 56 255 1.2E-17 T 18-10-2018 RU84_12230 7c49eb717908abfeb3449039f9576579 94 Pfam PF05164 Cell division protein ZapA 7 78 1.6E-12 T 18-10-2018 IPR007838 Cell division protein ZapA-like RU84_12230 7c49eb717908abfeb3449039f9576579 94 SUPERFAMILY SSF102829 7 89 8.63E-15 T 18-10-2018 IPR036192 Cell division protein ZapA-like superfamily RU84_12230 7c49eb717908abfeb3449039f9576579 94 Gene3D G3DSA:1.10.20.30 1 46 3.4E-7 T 18-10-2018 RU84_03520 d430e10471efc346025f399d6230786d 397 SUPERFAMILY SSF90123 98 392 1.47E-8 T 18-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 RU84_03520 d430e10471efc346025f399d6230786d 397 Pfam PF05992 SbmA/BacA-like family 84 396 3.9E-156 T 18-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 RU84_18085 f72d90b7a7a8e991c1d00e4ee5fa3e89 722 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 2 718 3.6E-281 T 18-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RU84_18085 f72d90b7a7a8e991c1d00e4ee5fa3e89 722 Pfam PF04185 Phosphoesterase family 45 454 6.0E-113 T 18-10-2018 IPR007312 Phosphoesterase GO:0016788 RU84_18085 f72d90b7a7a8e991c1d00e4ee5fa3e89 722 Pfam PF05506 Domain of unknown function (DUF756) 526 612 2.8E-23 T 18-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RU84_18085 f72d90b7a7a8e991c1d00e4ee5fa3e89 722 Pfam PF05506 Domain of unknown function (DUF756) 623 704 2.4E-14 T 18-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RU84_18085 f72d90b7a7a8e991c1d00e4ee5fa3e89 722 Gene3D G3DSA:3.40.720.10 34 201 4.6E-30 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_18085 f72d90b7a7a8e991c1d00e4ee5fa3e89 722 Gene3D G3DSA:3.40.720.10 299 503 2.8E-50 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_19020 6092269cfa080ab3688ddaecd575ff8a 373 Gene3D G3DSA:1.10.10.10 146 251 4.3E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_19020 6092269cfa080ab3688ddaecd575ff8a 373 Gene3D G3DSA:1.10.10.10 1 143 2.8E-35 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_19020 6092269cfa080ab3688ddaecd575ff8a 373 SUPERFAMILY SSF46785 12 139 9.07E-25 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_19020 6092269cfa080ab3688ddaecd575ff8a 373 SUPERFAMILY SSF46785 132 242 4.76E-26 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_19020 6092269cfa080ab3688ddaecd575ff8a 373 Pfam PF01051 Initiator Replication protein 8 238 1.1E-39 T 18-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 65 177 1.0E-6 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 Gene3D G3DSA:1.10.150.240 22 86 2.8E-35 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 Gene3D G3DSA:3.40.50.1000 11 202 2.8E-35 T 18-10-2018 IPR023214 HAD superfamily RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 183 7.3E-36 T 18-10-2018 RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 8.9E-5 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 8 19 8.9E-5 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_00415 9282fdc5305d9bbc86dbd66b34e9535a 212 SUPERFAMILY SSF56784 8 210 2.46E-40 T 18-10-2018 IPR036412 HAD-like superfamily RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 SMART SM00530 14 69 1.3E-15 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 Pfam PF01381 Helix-turn-helix 15 67 3.5E-15 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 Pfam PF07883 Cupin domain 113 178 1.0E-7 T 18-10-2018 IPR013096 Cupin 2, conserved barrel RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 Gene3D G3DSA:2.60.120.10 94 183 1.6E-15 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 Gene3D G3DSA:1.10.260.40 2 75 4.2E-19 T 18-10-2018 RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 SUPERFAMILY SSF47413 6 70 6.44E-17 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_01195 a8574c29c1a1dfd0908df7e9a85d5a07 183 SUPERFAMILY SSF51182 92 179 4.21E-12 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 201 220 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 151 173 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 336 355 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 363 383 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 301 327 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 6.3E-37 T 18-10-2018 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 Pfam PF00375 Sodium:dicarboxylate symporter family 6 408 1.5E-104 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 SUPERFAMILY SSF118215 6 410 1.44E-110 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_09915 d181d32fdc6f1ca89d34f1ae360b7155 435 Gene3D G3DSA:1.10.3860.10 1 420 3.8E-115 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 Pfam PF12833 Helix-turn-helix domain 195 271 5.4E-21 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 Gene3D G3DSA:1.10.10.60 168 275 1.2E-27 T 18-10-2018 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 SUPERFAMILY SSF46689 174 222 3.65E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 SMART SM00342 188 270 8.6E-24 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 Pfam PF02311 AraC-like ligand binding domain 15 133 1.4E-23 T 18-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 SUPERFAMILY SSF46689 224 271 2.78E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_06185 f76397c4aabc3d12616d093059d1a433 278 SUPERFAMILY SSF51215 13 137 7.98E-25 T 18-10-2018 IPR037923 Transcription regulator HTH-like RU84_10970 3aadb44d68102af38ca28439ccd26997 316 SUPERFAMILY SSF51735 3 188 1.67E-44 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10970 3aadb44d68102af38ca28439ccd26997 316 SUPERFAMILY SSF48179 191 281 4.25E-12 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_10970 3aadb44d68102af38ca28439ccd26997 316 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 247 1.0E-10 T 18-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_10970 3aadb44d68102af38ca28439ccd26997 316 PIRSF PIRSF000105 1 315 7.3E-63 T 18-10-2018 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 RU84_10970 3aadb44d68102af38ca28439ccd26997 316 Gene3D G3DSA:3.40.50.720 4 191 1.1E-52 T 18-10-2018 RU84_10970 3aadb44d68102af38ca28439ccd26997 316 Gene3D G3DSA:1.10.1040.10 192 315 1.8E-32 T 18-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RU84_10970 3aadb44d68102af38ca28439ccd26997 316 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 6 187 2.8E-46 T 18-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 RU84_05725 660f03d4795a099f80be0072b36f2bee 482 Gene3D G3DSA:2.20.200.10 111 368 1.4E-132 T 18-10-2018 RU84_05725 660f03d4795a099f80be0072b36f2bee 482 Gene3D G3DSA:1.20.1600.10 64 480 1.4E-132 T 18-10-2018 RU84_05725 660f03d4795a099f80be0072b36f2bee 482 Pfam PF02321 Outer membrane efflux protein 74 266 1.5E-27 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_05725 660f03d4795a099f80be0072b36f2bee 482 Pfam PF02321 Outer membrane efflux protein 291 477 1.7E-25 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_05725 660f03d4795a099f80be0072b36f2bee 482 SUPERFAMILY SSF56954 7 480 5.75E-109 T 18-10-2018 RU84_05725 660f03d4795a099f80be0072b36f2bee 482 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 479 1.0E-124 T 18-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 RU84_00930 92e3375dfa0d726fd9430805460f7c27 568 Pfam PF00990 Diguanylate cyclase, GGDEF domain 410 564 1.6E-39 T 18-10-2018 IPR000160 GGDEF domain RU84_00930 92e3375dfa0d726fd9430805460f7c27 568 SMART SM00267 399 567 1.4E-41 T 18-10-2018 IPR000160 GGDEF domain RU84_00930 92e3375dfa0d726fd9430805460f7c27 568 SUPERFAMILY SSF55073 415 566 4.94E-38 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_00930 92e3375dfa0d726fd9430805460f7c27 568 Gene3D G3DSA:3.30.70.270 397 567 2.6E-46 T 18-10-2018 RU84_00930 92e3375dfa0d726fd9430805460f7c27 568 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 406 567 1.4E-43 T 18-10-2018 IPR000160 GGDEF domain RU84_18965 136bd971d2cdc42cd802147014f93f7d 108 Pfam PF05939 Phage minor tail protein 2 107 7.1E-26 T 18-10-2018 IPR010265 Bacteriophage lambda, GpM, minor tail RU84_05580 e6718f5b23711d56e8d018b58604d499 178 Gene3D G3DSA:3.90.70.10 12 173 1.4E-9 T 18-10-2018 RU84_05580 e6718f5b23711d56e8d018b58604d499 178 Pfam PF03412 Peptidase C39 family 13 66 1.7E-8 T 18-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 RU84_10025 f4f43877197f123d6bd79de459a19ab0 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 284 6.7E-28 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_10025 f4f43877197f123d6bd79de459a19ab0 289 SUPERFAMILY SSF161098 89 274 1.16E-37 T 18-10-2018 IPR035906 MetI-like superfamily RU84_10025 f4f43877197f123d6bd79de459a19ab0 289 Gene3D G3DSA:1.10.3720.10 84 281 2.9E-31 T 18-10-2018 IPR035906 MetI-like superfamily RU84_11675 131eb0e9475850bded05aa9cf1d8e4f7 277 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 264 2.3E-55 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_11675 131eb0e9475850bded05aa9cf1d8e4f7 277 SUPERFAMILY SSF52096 6 263 9.96E-67 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_11675 131eb0e9475850bded05aa9cf1d8e4f7 277 Gene3D G3DSA:3.90.226.10 1 210 3.2E-75 T 18-10-2018 RU84_11675 131eb0e9475850bded05aa9cf1d8e4f7 277 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 109 129 - T 18-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 PRINTS PR00342 Rhesus blood group protein signature 163 179 5.4E-7 T 18-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 PRINTS PR00342 Rhesus blood group protein signature 290 312 5.4E-7 T 18-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 PRINTS PR00342 Rhesus blood group protein signature 345 363 5.4E-7 T 18-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 PRINTS PR00342 Rhesus blood group protein signature 259 277 5.4E-7 T 18-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 TIGRFAM TIGR00836 amt: ammonium transporter 68 462 3.8E-133 T 18-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 SUPERFAMILY SSF111352 64 446 1.44E-129 T 18-10-2018 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 Pfam PF00909 Ammonium Transporter Family 71 462 5.8E-118 T 18-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 ProSitePatterns PS01219 Ammonium transporters signature. 220 245 - T 18-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 RU84_17280 6882df7ea1846e41cf6eb4a97cd9248e 465 Gene3D G3DSA:1.10.3430.10 44 465 3.7E-140 T 18-10-2018 IPR029020 Ammonium/urea transporter RU84_01960 b4a36308704ea6d1521074fa41345876 290 SUPERFAMILY SSF54637 5 112 1.21E-36 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_01960 b4a36308704ea6d1521074fa41345876 290 Pfam PF13622 Thioesterase-like superfamily 33 282 5.0E-53 T 18-10-2018 RU84_01960 b4a36308704ea6d1521074fa41345876 290 SUPERFAMILY SSF54637 115 283 1.58E-48 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_01960 b4a36308704ea6d1521074fa41345876 290 Gene3D G3DSA:3.10.129.90 2 287 2.2E-96 T 18-10-2018 RU84_01115 27f10851c1d47a6b2d83e8680f0ba33e 185 Gene3D G3DSA:3.40.50.360 1 184 1.0E-55 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_01115 27f10851c1d47a6b2d83e8680f0ba33e 185 SUPERFAMILY SSF52218 1 180 6.29E-46 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_01115 27f10851c1d47a6b2d83e8680f0ba33e 185 Pfam PF02525 Flavodoxin-like fold 2 166 1.5E-40 T 18-10-2018 IPR003680 Flavodoxin-like fold RU84_11630 1b75996e9b400ef7edb1ddf1056e1ed2 448 Gene3D G3DSA:1.20.1250.20 15 431 9.5E-67 T 18-10-2018 RU84_11630 1b75996e9b400ef7edb1ddf1056e1ed2 448 Pfam PF07690 Major Facilitator Superfamily 26 363 2.0E-43 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_11630 1b75996e9b400ef7edb1ddf1056e1ed2 448 SUPERFAMILY SSF103473 8 439 1.96E-75 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_11630 1b75996e9b400ef7edb1ddf1056e1ed2 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 117 142 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_17555 3f81b6b773414227672dccac6b04075d 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 1.2E-13 T 18-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17555 3f81b6b773414227672dccac6b04075d 514 SUPERFAMILY SSF47917 384 512 7.85E-46 T 18-10-2018 RU84_17555 3f81b6b773414227672dccac6b04075d 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 49.709 T 18-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17555 3f81b6b773414227672dccac6b04075d 514 SUPERFAMILY SSF50615 11 95 3.4E-27 T 18-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17555 3f81b6b773414227672dccac6b04075d 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 2.4E-44 T 18-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17555 3f81b6b773414227672dccac6b04075d 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 5.1E-74 T 18-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17555 3f81b6b773414227672dccac6b04075d 514 SUPERFAMILY SSF52540 97 382 1.76E-92 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_17555 3f81b6b773414227672dccac6b04075d 514 Gene3D G3DSA:1.20.150.20 384 514 3.3E-46 T 18-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17555 3f81b6b773414227672dccac6b04075d 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 512 7.7E-249 T 18-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 RU84_17555 3f81b6b773414227672dccac6b04075d 514 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 367 376 - T 18-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17555 3f81b6b773414227672dccac6b04075d 514 Gene3D G3DSA:3.40.50.300 95 383 2.5E-129 T 18-10-2018 RU84_17555 3f81b6b773414227672dccac6b04075d 514 Gene3D G3DSA:2.40.30.20 2 94 6.2E-31 T 18-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_09995 c0e39065267430412a54a2cf75e37b72 228 Gene3D G3DSA:3.40.50.850 4 207 5.4E-46 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_09995 c0e39065267430412a54a2cf75e37b72 228 SUPERFAMILY SSF52499 6 207 6.54E-44 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_09995 c0e39065267430412a54a2cf75e37b72 228 Pfam PF00857 Isochorismatase family 16 168 2.0E-27 T 18-10-2018 IPR000868 Isochorismatase-like GO:0003824 RU84_14090 65659bd59152958157cb39a4cf4c4ac0 97 Gene3D G3DSA:1.10.3230.30 1 96 4.0E-13 T 18-10-2018 RU84_14090 65659bd59152958157cb39a4cf4c4ac0 97 Pfam PF05135 Phage gp6-like head-tail connector protein 4 92 1.8E-11 T 18-10-2018 IPR021146 Phage gp6-like head-tail connector protein RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Gene3D G3DSA:3.40.1390.10 1 93 1.6E-38 T 18-10-2018 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Pfam PF01225 Mur ligase family, catalytic domain 36 104 1.8E-7 T 18-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 SUPERFAMILY SSF53244 325 461 1.53E-28 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 SUPERFAMILY SSF63418 14 109 1.83E-22 T 18-10-2018 IPR035911 MurE/MurF, N-terminal RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 403 1.9E-12 T 18-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Pfam PF08245 Mur ligase middle domain 120 303 5.8E-44 T 18-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 42 461 1.0E-127 T 18-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 SUPERFAMILY SSF53623 114 323 1.31E-55 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Gene3D G3DSA:3.40.1190.10 94 322 3.8E-92 T 18-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Gene3D G3DSA:3.90.190.20 323 466 5.4E-48 T 18-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 RU84_01410 9b5da85357d4c97f79ddb70e77e27003 466 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 14 463 30.908 T 18-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_09735 e8663f1fb12948b447e456c57364dfb9 287 Gene3D G3DSA:1.20.910.10 27 280 1.4E-29 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_09735 e8663f1fb12948b447e456c57364dfb9 287 SMART SM01236 111 223 2.9E-13 T 18-10-2018 RU84_09735 e8663f1fb12948b447e456c57364dfb9 287 SUPERFAMILY SSF48613 34 272 3.25E-13 T 18-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 RU84_06770 ed2816a77c4c362daf9fca7edb18d15d 399 Gene3D G3DSA:1.20.1250.20 210 398 3.7E-18 T 18-10-2018 RU84_06770 ed2816a77c4c362daf9fca7edb18d15d 399 SUPERFAMILY SSF103473 10 390 8.63E-60 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_06770 ed2816a77c4c362daf9fca7edb18d15d 399 Pfam PF07690 Major Facilitator Superfamily 23 350 7.9E-37 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_06770 ed2816a77c4c362daf9fca7edb18d15d 399 Gene3D G3DSA:1.20.1250.20 15 209 5.3E-28 T 18-10-2018 RU84_14225 34be79be88cd3b5894c17bf09382bdc5 247 Pfam PF04492 Bacteriophage replication protein O 10 87 9.1E-11 T 18-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 RU84_14225 34be79be88cd3b5894c17bf09382bdc5 247 Gene3D G3DSA:1.10.10.10 7 93 6.0E-14 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 18-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.206 T 18-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 SMART SM01387 8 88 1.6E-51 T 18-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.9E-38 T 18-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 SUPERFAMILY SSF47060 3 89 4.41E-35 T 18-10-2018 IPR009068 S15/NS1, RNA-binding RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 Pfam PF00312 Ribosomal protein S15 9 88 2.2E-36 T 18-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 6.0E-37 T 18-10-2018 RU84_16605 8bfaa2541ec67e17d2423c4666159fc8 89 Gene3D G3DSA:1.10.287.10 2 89 2.9E-35 T 18-10-2018 RU84_19145 3a5d6fd272473e89db494e45fcf24dc2 236 SUPERFAMILY SSF53955 14 146 7.6E-44 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_19145 3a5d6fd272473e89db494e45fcf24dc2 236 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 43 71 - T 18-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 RU84_19145 3a5d6fd272473e89db494e45fcf24dc2 236 Gene3D G3DSA:1.10.530.10 17 158 2.1E-41 T 18-10-2018 RU84_19145 3a5d6fd272473e89db494e45fcf24dc2 236 Pfam PF01464 Transglycosylase SLT domain 25 130 1.8E-28 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_07860 b3b2b1e87a94130cf22e27a449660efa 238 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 50 222 3.3E-15 T 18-10-2018 IPR013830 SGNH hydrolase-type esterase domain RU84_07860 b3b2b1e87a94130cf22e27a449660efa 238 Gene3D G3DSA:3.40.50.1110 17 238 4.6E-26 T 18-10-2018 IPR036514 SGNH hydrolase superfamily RU84_07860 b3b2b1e87a94130cf22e27a449660efa 238 SUPERFAMILY SSF52266 43 234 2.6E-32 T 18-10-2018 RU84_08515 18cf3572140a65ba7ae5faf836a842b6 322 SUPERFAMILY SSF64167 21 317 4.97E-41 T 18-10-2018 RU84_08515 18cf3572140a65ba7ae5faf836a842b6 322 Pfam PF01975 Survival protein SurE 23 243 1.7E-37 T 18-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RU84_08515 18cf3572140a65ba7ae5faf836a842b6 322 Gene3D G3DSA:3.40.1210.10 21 317 1.2E-43 T 18-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RU84_16655 ecc24697bad0bb9ee78cdd488c0e24a7 539 Pfam PF03109 ABC1 family 113 231 2.5E-33 T 18-10-2018 IPR004147 UbiB domain RU84_16655 ecc24697bad0bb9ee78cdd488c0e24a7 539 SUPERFAMILY SSF56112 95 435 5.31E-24 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_09415 f3030a9c2709d8ab90fdaaf11b569581 336 SUPERFAMILY SSF52540 52 155 8.7E-12 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09415 f3030a9c2709d8ab90fdaaf11b569581 336 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 6 336 34.345 T 18-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 RU84_09415 f3030a9c2709d8ab90fdaaf11b569581 336 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 26 329 1.7E-67 T 18-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 RU84_09415 f3030a9c2709d8ab90fdaaf11b569581 336 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 329 3.4E-97 T 18-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 RU84_08365 fd282847f4de1a5da8a19d75ca819f3e 152 Pfam PF04657 Putative inner membrane exporter, YdcZ 4 139 1.7E-34 T 18-10-2018 IPR006750 Putative inner membrane exporter, YdcZ RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 Pfam PF12833 Helix-turn-helix domain 228 306 2.3E-20 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 Gene3D G3DSA:1.10.10.60 202 309 2.1E-26 T 18-10-2018 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 289 9.8E-7 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 289 305 9.8E-7 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 SUPERFAMILY SSF51182 40 75 7.69E-5 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 SUPERFAMILY SSF46689 258 309 3.14E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 SUPERFAMILY SSF46689 206 256 5.02E-5 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 SMART SM00342 222 305 9.4E-29 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_09115 ec5fb0a92378c6b2cc8241a6a3e94293 315 Pfam PF12852 Cupin 2 190 7.8E-27 T 18-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 109 124 1.7E-19 T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 61 69 1.7E-19 T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 145 161 1.7E-19 T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 Pfam PF01252 Signal peptidase (SPase) II 24 165 3.4E-38 T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 15 170 17.593 T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 TIGRFAM TIGR00077 lspA: signal peptidase II 18 170 2.9E-41 T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_18200 9e0507ecff5527f35c8c9bfb640395a9 176 ProSitePatterns PS00855 Signal peptidases II signature. 112 124 - T 18-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 RU84_03620 7640c2c101a8325757adcac3c733740b 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 301 316 1.0E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_03620 7640c2c101a8325757adcac3c733740b 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 316 332 1.0E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_03620 7640c2c101a8325757adcac3c733740b 344 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 21 203 2.0E-21 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_03620 7640c2c101a8325757adcac3c733740b 344 Gene3D G3DSA:1.10.10.60 231 341 4.3E-24 T 18-10-2018 RU84_03620 7640c2c101a8325757adcac3c733740b 344 SUPERFAMILY SSF46689 286 335 2.54E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_03620 7640c2c101a8325757adcac3c733740b 344 SMART SM00342 250 332 2.8E-24 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_03620 7640c2c101a8325757adcac3c733740b 344 Pfam PF12833 Helix-turn-helix domain 257 332 1.3E-16 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_05310 9479ee0ea6e981f2827d2a76872dd974 615 Gene3D G3DSA:3.30.300.30 414 542 6.6E-24 T 18-10-2018 RU84_05310 9479ee0ea6e981f2827d2a76872dd974 615 ProSitePatterns PS00455 Putative AMP-binding domain signature. 161 172 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_05310 9479ee0ea6e981f2827d2a76872dd974 615 SUPERFAMILY SSF56801 19 518 4.19E-117 T 18-10-2018 RU84_05310 9479ee0ea6e981f2827d2a76872dd974 615 Pfam PF00501 AMP-binding enzyme 32 417 4.1E-71 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_05310 9479ee0ea6e981f2827d2a76872dd974 615 Pfam PF13193 AMP-binding enzyme C-terminal domain 426 505 3.9E-9 T 18-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain RU84_05310 9479ee0ea6e981f2827d2a76872dd974 615 Gene3D G3DSA:3.40.50.12780 17 410 1.4E-88 T 18-10-2018 RU84_01675 6171103088a7f9338271ca8c885bb62e 409 SUPERFAMILY SSF103473 9 399 2.35E-55 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_01675 6171103088a7f9338271ca8c885bb62e 409 Gene3D G3DSA:1.20.1720.10 17 391 2.3E-64 T 18-10-2018 RU84_01675 6171103088a7f9338271ca8c885bb62e 409 ProSitePatterns PS00216 Sugar transport proteins signature 1. 70 86 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_01675 6171103088a7f9338271ca8c885bb62e 409 Pfam PF07690 Major Facilitator Superfamily 23 353 4.2E-40 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_16455 8f883b84e718132c4ae5cac139556c82 491 Gene3D G3DSA:3.40.50.300 1 93 4.9E-6 T 18-10-2018 RU84_16455 8f883b84e718132c4ae5cac139556c82 491 Gene3D G3DSA:3.40.50.300 99 262 1.4E-30 T 18-10-2018 RU84_16455 8f883b84e718132c4ae5cac139556c82 491 Pfam PF05707 Zonular occludens toxin (Zot) 138 260 2.5E-10 T 18-10-2018 IPR008900 Zona occludens toxin RU84_11600 e5237a67573ead6ab97d5a15000f9944 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 25 207 1.4E-39 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_11600 e5237a67573ead6ab97d5a15000f9944 337 SMART SM00342 251 333 3.3E-15 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_11600 e5237a67573ead6ab97d5a15000f9944 337 Pfam PF12833 Helix-turn-helix domain 257 333 1.1E-14 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_11600 e5237a67573ead6ab97d5a15000f9944 337 SUPERFAMILY SSF46689 287 334 1.88E-8 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_11600 e5237a67573ead6ab97d5a15000f9944 337 Gene3D G3DSA:1.10.10.60 229 337 6.2E-18 T 18-10-2018 RU84_08870 e5c8a37226a843f43baf3f8dea42c267 361 Pfam PF00561 alpha/beta hydrolase fold 74 335 8.2E-13 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_08870 e5c8a37226a843f43baf3f8dea42c267 361 Gene3D G3DSA:3.40.50.1820 41 360 4.5E-22 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08870 e5c8a37226a843f43baf3f8dea42c267 361 SUPERFAMILY SSF53474 49 354 1.91E-27 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17260 e72432d01f6700bae27e432f6121e909 219 Gene3D G3DSA:2.40.30.20 1 88 1.0E-27 T 18-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17260 e72432d01f6700bae27e432f6121e909 219 Gene3D G3DSA:2.40.30.20 101 205 2.5E-34 T 18-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 RU84_17260 e72432d01f6700bae27e432f6121e909 219 Pfam PF00677 Lumazine binding domain 99 183 3.4E-24 T 18-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_17260 e72432d01f6700bae27e432f6121e909 219 Pfam PF00677 Lumazine binding domain 3 86 4.9E-22 T 18-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_17260 e72432d01f6700bae27e432f6121e909 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 1.2E-64 T 18-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_17260 e72432d01f6700bae27e432f6121e909 219 SUPERFAMILY SSF63380 92 193 6.63E-32 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_17260 e72432d01f6700bae27e432f6121e909 219 PIRSF PIRSF000498 1 212 3.5E-78 T 18-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_17260 e72432d01f6700bae27e432f6121e909 219 SUPERFAMILY SSF63380 1 88 3.23E-27 T 18-10-2018 IPR017938 Riboflavin synthase-like beta-barrel RU84_00920 10f2496b76de7edf52fa78814c1a0c75 655 ProSitePatterns PS01303 BCCT family of transporters signature. 316 325 - T 18-10-2018 IPR018093 BCCT transporter, conserved site RU84_00920 10f2496b76de7edf52fa78814c1a0c75 655 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 496 1.5E-194 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_00920 10f2496b76de7edf52fa78814c1a0c75 655 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 497 2.7E-166 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_15765 408b539d66d6995f5d47ab2588f64915 169 Gene3D G3DSA:3.30.160.150 28 169 1.0E-41 T 18-10-2018 RU84_15765 408b539d66d6995f5d47ab2588f64915 169 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 8 164 21.455 T 18-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 RU84_14740 824c87049403c03beb3130fab279785f 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 18.295 T 18-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 RU84_14740 824c87049403c03beb3130fab279785f 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 96 7.2E-23 T 18-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like RU84_02875 1398e2b35014a25aa2f60b23aa6f87af 89 Pfam PF05449 Putative 3TM holin, Phage_holin_3 10 85 2.8E-11 T 18-10-2018 IPR008473 Putative 3TM holin, Phage holin 3 RU84_03380 184614c19d715e2af97535124fb13cb9 120 SMART SM00448 2 115 1.7E-37 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_03380 184614c19d715e2af97535124fb13cb9 120 Gene3D G3DSA:3.40.50.12740 1 120 3.8E-42 T 18-10-2018 RU84_03380 184614c19d715e2af97535124fb13cb9 120 SUPERFAMILY SSF52172 1 120 1.2E-37 T 18-10-2018 IPR011006 CheY-like superfamily RU84_03380 184614c19d715e2af97535124fb13cb9 120 Pfam PF00072 Response regulator receiver domain 4 115 9.1E-28 T 18-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 RU84_08695 ffb386e2bf43d90df63c71f3a3b9f903 284 SUPERFAMILY SSF161098 87 263 2.62E-28 T 18-10-2018 IPR035906 MetI-like superfamily RU84_08695 ffb386e2bf43d90df63c71f3a3b9f903 284 Gene3D G3DSA:1.10.3720.10 80 276 7.5E-22 T 18-10-2018 IPR035906 MetI-like superfamily RU84_08695 ffb386e2bf43d90df63c71f3a3b9f903 284 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 277 1.5E-20 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_04790 6cd80cc380f8f91e86f1c01c66793933 145 Pfam PF03061 Thioesterase superfamily 57 133 7.7E-9 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_04790 6cd80cc380f8f91e86f1c01c66793933 145 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 29 141 3.5E-20 T 18-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RU84_04790 6cd80cc380f8f91e86f1c01c66793933 145 Gene3D G3DSA:3.10.129.10 5 145 8.9E-37 T 18-10-2018 RU84_04790 6cd80cc380f8f91e86f1c01c66793933 145 SUPERFAMILY SSF54637 5 141 1.5E-35 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 Pfam PF02080 TrkA-C domain 307 373 1.8E-12 T 18-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 Gene3D G3DSA:3.30.70.1450 305 380 2.4E-12 T 18-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 Pfam PF06826 Predicted Permease Membrane Region 17 180 6.2E-33 T 18-10-2018 IPR006512 YidE/YbjL duplication RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 Pfam PF06826 Predicted Permease Membrane Region 391 558 1.1E-34 T 18-10-2018 IPR006512 YidE/YbjL duplication RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 Gene3D G3DSA:3.30.70.1450 222 293 2.2E-5 T 18-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 SUPERFAMILY SSF116726 229 288 1.57E-6 T 18-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 SUPERFAMILY SSF116726 305 375 7.85E-11 T 18-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 TIGRFAM TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter 3 560 1.9E-225 T 18-10-2018 IPR022457 Aspartate-alanine antiporter GO:0005215|GO:0016020 RU84_06285 48c6e538552f21fb1ab4ffbaeb8a2e42 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 393 545 3.3E-24 T 18-10-2018 IPR006512 YidE/YbjL duplication RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 Gene3D G3DSA:1.10.10.60 160 264 1.2E-23 T 18-10-2018 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 Gene3D G3DSA:2.60.120.10 11 98 1.0E-5 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 SUPERFAMILY SSF46689 215 261 2.4E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 229 244 2.4E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 260 2.4E-5 T 18-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 SUPERFAMILY SSF51182 16 208 1.35E-12 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 SMART SM00342 178 260 5.4E-23 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 Pfam PF02311 AraC-like ligand binding domain 33 140 1.2E-7 T 18-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 Pfam PF12833 Helix-turn-helix domain 184 261 1.2E-20 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_02245 6287322ca31815ef4ad0931d94a5b490 264 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 215 256 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_01975 4542d862720872f4d5136b3c12aee33f 258 Pfam PF01926 50S ribosome-binding GTPase 63 176 2.9E-18 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_01975 4542d862720872f4d5136b3c12aee33f 258 SUPERFAMILY SSF52540 53 237 3.61E-33 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01975 4542d862720872f4d5136b3c12aee33f 258 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 44 229 6.7E-73 T 18-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 RU84_01975 4542d862720872f4d5136b3c12aee33f 258 Gene3D G3DSA:3.40.50.300 38 236 3.0E-49 T 18-10-2018 RU84_01975 4542d862720872f4d5136b3c12aee33f 258 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 49 233 26.87 T 18-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 RU84_02190 e201b93071349e76dea1fce7b2220da3 684 SUPERFAMILY SSF55486 14 676 2.3E-188 T 18-10-2018 RU84_02190 e201b93071349e76dea1fce7b2220da3 684 Gene3D G3DSA:1.10.1370.40 17 674 7.1E-245 T 18-10-2018 RU84_02190 e201b93071349e76dea1fce7b2220da3 684 Pfam PF01432 Peptidase family M3 226 675 1.9E-150 T 18-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 RU84_02190 e201b93071349e76dea1fce7b2220da3 684 Gene3D G3DSA:1.10.1370.10 145 609 7.1E-245 T 18-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 RU84_17750 f1be2e34005ba38d0426b85d6a853067 629 Pfam PF00501 AMP-binding enzyme 14 461 3.0E-84 T 18-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 RU84_17750 f1be2e34005ba38d0426b85d6a853067 629 ProSitePatterns PS00455 Putative AMP-binding domain signature. 167 178 - T 18-10-2018 IPR020845 AMP-binding, conserved site RU84_17750 f1be2e34005ba38d0426b85d6a853067 629 Gene3D G3DSA:3.40.50.12780 1 454 5.9E-136 T 18-10-2018 RU84_17750 f1be2e34005ba38d0426b85d6a853067 629 Gene3D G3DSA:3.30.300.30 455 584 7.5E-33 T 18-10-2018 RU84_17750 f1be2e34005ba38d0426b85d6a853067 629 SUPERFAMILY SSF56801 8 563 5.1E-108 T 18-10-2018 RU84_11525 e5425cc29192d403edb609fecb32dc6a 188 Gene3D G3DSA:3.30.420.10 1 187 1.0E-75 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_11525 e5425cc29192d403edb609fecb32dc6a 188 Pfam PF01351 Ribonuclease HII 4 181 1.6E-40 T 18-10-2018 IPR024567 Ribonuclease HII/HIII domain RU84_11525 e5425cc29192d403edb609fecb32dc6a 188 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 182 37.252 T 18-10-2018 IPR022898 Ribonuclease HII GO:0004523 RU84_11525 e5425cc29192d403edb609fecb32dc6a 188 SUPERFAMILY SSF53098 2 187 5.61E-68 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_06320 bd9b32e068d90d8924b7272cff6d1a79 162 SUPERFAMILY SSF143744 26 159 1.07E-32 T 18-10-2018 IPR038084 GlcG-like domain superfamily RU84_06320 bd9b32e068d90d8924b7272cff6d1a79 162 Gene3D G3DSA:3.30.450.150 18 159 1.2E-34 T 18-10-2018 IPR038084 GlcG-like domain superfamily RU84_06320 bd9b32e068d90d8924b7272cff6d1a79 162 Pfam PF03928 Haem-degrading 31 157 5.3E-27 T 18-10-2018 IPR005624 Haem-degrading RU84_09830 689c7206e3f977b174026609b1a93cec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.4E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_09830 689c7206e3f977b174026609b1a93cec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.4E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_09830 689c7206e3f977b174026609b1a93cec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.4E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_09830 689c7206e3f977b174026609b1a93cec 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.4E-33 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_09830 689c7206e3f977b174026609b1a93cec 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 4.4E-160 T 18-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RU84_09830 689c7206e3f977b174026609b1a93cec 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 2.6E-41 T 18-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 RU84_09830 689c7206e3f977b174026609b1a93cec 363 SUPERFAMILY SSF81271 279 360 7.19E-38 T 18-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 RU84_09830 689c7206e3f977b174026609b1a93cec 363 Gene3D G3DSA:3.40.50.300 4 278 5.3E-153 T 18-10-2018 RU84_09830 689c7206e3f977b174026609b1a93cec 363 PIRSF PIRSF006641 1 363 1.7E-156 T 18-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RU84_09830 689c7206e3f977b174026609b1a93cec 363 Gene3D G3DSA:3.10.20.30 48 361 5.3E-153 T 18-10-2018 IPR012675 Beta-grasp domain superfamily RU84_09830 689c7206e3f977b174026609b1a93cec 363 SUPERFAMILY SSF52540 3 301 4.04E-83 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09830 689c7206e3f977b174026609b1a93cec 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.249 T 18-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 RU84_09830 689c7206e3f977b174026609b1a93cec 363 Pfam PF01926 50S ribosome-binding GTPase 5 128 8.4E-23 T 18-10-2018 IPR006073 GTP binding domain GO:0005525 RU84_09830 689c7206e3f977b174026609b1a93cec 363 Gene3D G3DSA:1.10.150.300 113 200 5.3E-153 T 18-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 RU84_12020 934b7ccffc0a5756cdffc20f55e0c49c 251 SUPERFAMILY SSF52540 2 208 1.68E-11 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_11595 96457e09f0dfca6230c9c127ea32735b 291 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 8 269 1.2E-45 T 18-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 RU84_11595 96457e09f0dfca6230c9c127ea32735b 291 Pfam PF04072 Leucine carboxyl methyltransferase 11 193 6.6E-39 T 18-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 RU84_11595 96457e09f0dfca6230c9c127ea32735b 291 SUPERFAMILY SSF53335 7 288 5.14E-49 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_11595 96457e09f0dfca6230c9c127ea32735b 291 Gene3D G3DSA:3.40.50.150 2 285 1.2E-45 T 18-10-2018 RU84_17675 8d1bb935836753c4666122c7dfef940e 213 Pfam PF09335 SNARE associated Golgi protein 45 171 6.2E-24 T 18-10-2018 IPR032816 SNARE associated Golgi protein RU84_03245 0ff05003903165476eaa63b1a815b54b 356 Gene3D G3DSA:3.30.1330.60 218 339 3.2E-45 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_03245 0ff05003903165476eaa63b1a815b54b 356 PRINTS PR01021 OMPA domain signature 264 279 6.4E-10 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_03245 0ff05003903165476eaa63b1a815b54b 356 PRINTS PR01021 OMPA domain signature 234 256 6.4E-10 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_03245 0ff05003903165476eaa63b1a815b54b 356 PRINTS PR01021 OMPA domain signature 279 295 6.4E-10 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_03245 0ff05003903165476eaa63b1a815b54b 356 Gene3D G3DSA:2.40.160.20 14 193 2.6E-18 T 18-10-2018 RU84_03245 0ff05003903165476eaa63b1a815b54b 356 SUPERFAMILY SSF103088 212 333 4.45E-34 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_03245 0ff05003903165476eaa63b1a815b54b 356 SUPERFAMILY SSF56925 31 198 9.68E-19 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_03245 0ff05003903165476eaa63b1a815b54b 356 Pfam PF00691 OmpA family 233 329 2.0E-23 T 18-10-2018 IPR006665 OmpA-like domain RU84_03245 0ff05003903165476eaa63b1a815b54b 356 Pfam PF13505 Outer membrane protein beta-barrel domain 7 191 7.8E-12 T 18-10-2018 IPR027385 Outer membrane protein beta-barrel RU84_09235 c49a6f73d6e6a8f038253e4c6e24fbce 219 Pfam PF02586 SOS response associated peptidase (SRAP) 44 206 4.3E-24 T 18-10-2018 IPR003738 SOS response associated peptidase (SRAP) RU84_09235 c49a6f73d6e6a8f038253e4c6e24fbce 219 Gene3D G3DSA:3.90.1680.10 2 209 1.3E-43 T 18-10-2018 IPR036590 SOS response associated peptidase-like RU84_09235 c49a6f73d6e6a8f038253e4c6e24fbce 219 SUPERFAMILY SSF143081 21 203 3.53E-43 T 18-10-2018 IPR036590 SOS response associated peptidase-like RU84_18520 be1f2edb77b79a5fad6ddfa9fc179289 421 SUPERFAMILY SSF52141 243 399 2.68E-17 T 18-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_18520 be1f2edb77b79a5fad6ddfa9fc179289 421 Gene3D G3DSA:1.10.150.870 56 150 1.5E-7 T 18-10-2018 RU84_18520 be1f2edb77b79a5fad6ddfa9fc179289 421 Pfam PF03167 Uracil DNA glycosylase superfamily 272 378 1.1E-9 T 18-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_18520 be1f2edb77b79a5fad6ddfa9fc179289 421 Gene3D G3DSA:3.40.470.10 227 421 1.2E-21 T 18-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 RU84_18520 be1f2edb77b79a5fad6ddfa9fc179289 421 Pfam PF14579 Helix-hairpin-helix motif 84 136 1.6E-10 T 18-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 SUPERFAMILY SSF51735 152 312 8.66E-41 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 146 6.9E-27 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 Gene3D G3DSA:3.90.180.10 12 341 1.6E-133 T 18-10-2018 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 SMART SM00829 9 342 3.0E-5 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 180 207 - T 18-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 SUPERFAMILY SSF50129 12 176 1.67E-50 T 18-10-2018 IPR011032 GroES-like superfamily RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 18-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 Gene3D G3DSA:3.40.50.720 168 321 1.6E-133 T 18-10-2018 RU84_08430 ffcb31cad7ddc5ba459ec55119e272dd 350 Pfam PF00107 Zinc-binding dehydrogenase 187 306 1.1E-21 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_18630 7984fd56915c1dfe145e1e88456377ed 558 Pfam PF00884 Sulfatase 243 535 8.1E-55 T 18-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 RU84_18630 7984fd56915c1dfe145e1e88456377ed 558 Gene3D G3DSA:3.40.720.10 226 553 5.5E-92 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_18630 7984fd56915c1dfe145e1e88456377ed 558 Pfam PF08019 Domain of unknown function (DUF1705) 64 213 4.8E-42 T 18-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 RU84_18630 7984fd56915c1dfe145e1e88456377ed 558 SUPERFAMILY SSF53649 238 540 1.0E-25 T 18-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 Pfam PF00701 Dihydrodipicolinate synthetase family 3 289 4.5E-66 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 SUPERFAMILY SSF51569 1 290 2.51E-83 T 18-10-2018 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 1.5E-15 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 1.5E-15 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 1.5E-15 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 1.5E-15 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 SMART SM01130 2 291 7.5E-91 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 Gene3D G3DSA:3.20.20.70 1 292 1.5E-95 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_17310 534dfaf2a2c09417bcadb867277e6f4b 292 PIRSF PIRSF001365 1 292 2.1E-78 T 18-10-2018 IPR002220 DapA-like GO:0016829 RU84_19360 a424417480d12b719682d6aa573892e0 172 Gene3D G3DSA:1.25.40.10 88 172 4.7E-24 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_19360 a424417480d12b719682d6aa573892e0 172 Gene3D G3DSA:1.25.40.10 12 87 8.9E-12 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_19360 a424417480d12b719682d6aa573892e0 172 Pfam PF08238 Sel1 repeat 23 57 5.0E-7 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 Pfam PF08238 Sel1 repeat 103 139 0.012 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 Pfam PF08238 Sel1 repeat 142 169 0.068 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 Pfam PF08238 Sel1 repeat 59 102 1.4E-4 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 SMART SM00671 140 172 26.0 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 SMART SM00671 22 57 3.1E-7 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 SMART SM00671 65 102 6.2 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 SMART SM00671 103 139 0.002 T 18-10-2018 IPR006597 Sel1-like repeat RU84_19360 a424417480d12b719682d6aa573892e0 172 SUPERFAMILY SSF81901 17 170 4.53E-28 T 18-10-2018 RU84_05390 17aa837a5ff5b44006be4334fad16b62 251 SUPERFAMILY SSF56214 137 250 6.8E-13 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_05390 17aa837a5ff5b44006be4334fad16b62 251 PRINTS PR01399 Enterobactin synthetase component D signature 96 114 6.5E-8 T 18-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 RU84_05390 17aa837a5ff5b44006be4334fad16b62 251 PRINTS PR01399 Enterobactin synthetase component D signature 66 86 6.5E-8 T 18-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 RU84_05390 17aa837a5ff5b44006be4334fad16b62 251 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 136 218 1.6E-11 T 18-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_05390 17aa837a5ff5b44006be4334fad16b62 251 Gene3D G3DSA:3.90.470.20 135 250 2.4E-7 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_05230 6ab874ab8b25667f25cbc578668a6be7 707 Gene3D G3DSA:3.20.20.450 459 705 1.1E-26 T 18-10-2018 IPR035919 EAL domain superfamily RU84_05230 6ab874ab8b25667f25cbc578668a6be7 707 Pfam PF00563 EAL domain 462 696 4.3E-24 T 18-10-2018 IPR001633 EAL domain RU84_05230 6ab874ab8b25667f25cbc578668a6be7 707 SUPERFAMILY SSF141868 462 696 6.28E-27 T 18-10-2018 IPR035919 EAL domain superfamily RU84_05230 6ab874ab8b25667f25cbc578668a6be7 707 Gene3D G3DSA:3.30.450.20 156 264 1.7E-7 T 18-10-2018 RU84_05230 6ab874ab8b25667f25cbc578668a6be7 707 SUPERFAMILY SSF55785 146 232 7.85E-7 T 18-10-2018 IPR035965 PAS domain superfamily RU84_05230 6ab874ab8b25667f25cbc578668a6be7 707 SMART SM00052 456 702 1.7E-7 T 18-10-2018 IPR001633 EAL domain RU84_14315 9f7290260dda37ce334094b93f5d558b 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 5 51 9.6E-9 T 18-10-2018 IPR010260 DNA-binding transcriptional activator AlpA RU84_01395 e98ca2806a2225534caea035e950768d 110 Hamap MF_00910 Cell division protein FtsL [ftsL]. 17 100 13.629 T 18-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RU84_01395 e98ca2806a2225534caea035e950768d 110 Pfam PF04999 Cell division protein FtsL 16 101 2.3E-26 T 18-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RU84_01395 e98ca2806a2225534caea035e950768d 110 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 19 100 6.6E-12 T 18-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 RU84_11475 b3fe32e450cee012e16df404f2ae97b6 349 PRINTS PR00069 Aldo-keto reductase signature 167 184 1.3E-7 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_11475 b3fe32e450cee012e16df404f2ae97b6 349 PRINTS PR00069 Aldo-keto reductase signature 116 134 1.3E-7 T 18-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 RU84_11475 b3fe32e450cee012e16df404f2ae97b6 349 SUPERFAMILY SSF51430 1 347 8.25E-106 T 18-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RU84_11475 b3fe32e450cee012e16df404f2ae97b6 349 Gene3D G3DSA:3.20.20.100 1 349 2.3E-124 T 18-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RU84_11475 b3fe32e450cee012e16df404f2ae97b6 349 Pfam PF00248 Aldo/keto reductase family 15 340 5.6E-69 T 18-10-2018 IPR023210 NADP-dependent oxidoreductase domain RU84_02590 17146c561dd3730db67975f1d91e2379 111 Pfam PF04273 Putative phosphatase (DUF442) 2 106 1.2E-30 T 18-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 RU84_02590 17146c561dd3730db67975f1d91e2379 111 Gene3D G3DSA:3.90.190.10 1 110 2.1E-30 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_02590 17146c561dd3730db67975f1d91e2379 111 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 3 105 2.6E-27 T 18-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 RU84_06385 6d924b8dbc2435814c2c6279b80ed1aa 190 SUPERFAMILY SSF54427 46 164 5.72E-13 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_06385 6d924b8dbc2435814c2c6279b80ed1aa 190 Gene3D G3DSA:3.10.450.50 48 174 7.3E-10 T 18-10-2018 RU84_00670 3e2bdf4d487a110c1730d28430518328 255 Pfam PF13557 Putative MetA-pathway of phenol degradation 27 254 7.7E-20 T 18-10-2018 IPR025737 MetA-pathway of phenol degradation, putative RU84_03410 d2a01f1ae2f9c1b340c35c7d8929dd64 293 Pfam PF12146 Serine aminopeptidase, S33 33 234 5.8E-10 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_03410 d2a01f1ae2f9c1b340c35c7d8929dd64 293 SUPERFAMILY SSF53474 6 286 2.2E-32 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_03410 d2a01f1ae2f9c1b340c35c7d8929dd64 293 Gene3D G3DSA:3.40.50.1820 188 287 5.8E-7 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_03410 d2a01f1ae2f9c1b340c35c7d8929dd64 293 Gene3D G3DSA:3.40.50.1820 2 187 7.0E-21 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_11805 6ab9d37910a4d5d5c3bc7218db5ccedd 476 Pfam PF00171 Aldehyde dehydrogenase family 15 471 3.4E-156 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_11805 6ab9d37910a4d5d5c3bc7218db5ccedd 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 18-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 RU84_11805 6ab9d37910a4d5d5c3bc7218db5ccedd 476 SUPERFAMILY SSF53720 4 473 6.02E-155 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_11805 6ab9d37910a4d5d5c3bc7218db5ccedd 476 Gene3D G3DSA:3.40.605.10 10 469 2.1E-161 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_11805 6ab9d37910a4d5d5c3bc7218db5ccedd 476 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_11805 6ab9d37910a4d5d5c3bc7218db5ccedd 476 Gene3D G3DSA:3.40.309.10 253 441 2.1E-161 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_10990 995c80d207bd464089aab64dea79cd74 434 Gene3D G3DSA:1.20.1250.20 18 429 4.3E-70 T 18-10-2018 RU84_10990 995c80d207bd464089aab64dea79cd74 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_10990 995c80d207bd464089aab64dea79cd74 434 SUPERFAMILY SSF103473 10 429 1.05E-76 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10990 995c80d207bd464089aab64dea79cd74 434 Pfam PF07690 Major Facilitator Superfamily 28 356 1.4E-40 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_00665 1f60164fef7b8678d4b01c6e39cbb8fa 181 Gene3D G3DSA:1.25.40.20 2 180 7.2E-16 T 18-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RU84_00665 1f60164fef7b8678d4b01c6e39cbb8fa 181 SUPERFAMILY SSF48403 6 139 3.8E-10 T 18-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily RU84_02075 08f4885e201b1c8b060ee623838fd856 101 SUPERFAMILY SSF57716 2 101 9.27E-39 T 18-10-2018 RU84_02075 08f4885e201b1c8b060ee623838fd856 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 27.764 T 18-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid RU84_02075 08f4885e201b1c8b060ee623838fd856 101 Gene3D G3DSA:4.10.830.10 41 101 7.9E-22 T 18-10-2018 RU84_02075 08f4885e201b1c8b060ee623838fd856 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 2.4E-25 T 18-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_02075 08f4885e201b1c8b060ee623838fd856 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 18-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 RU84_04000 f4a115c18061103469471a11f0edc8dc 238 SUPERFAMILY SSF55486 172 235 1.06E-6 T 18-10-2018 RU84_10235 b7d7c6471106b110d33bc44a4c8a70df 288 SUPERFAMILY SSF53850 12 270 3.18E-58 T 18-10-2018 RU84_10235 b7d7c6471106b110d33bc44a4c8a70df 288 SMART SM00062 53 275 2.9E-69 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_10235 b7d7c6471106b110d33bc44a4c8a70df 288 Gene3D G3DSA:3.40.190.10 48 268 1.7E-76 T 18-10-2018 RU84_10235 b7d7c6471106b110d33bc44a4c8a70df 288 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 76 89 - T 18-10-2018 IPR018313 Solute-binding protein family 3, conserved site RU84_10235 b7d7c6471106b110d33bc44a4c8a70df 288 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 54 270 9.0E-51 T 18-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF RU84_10235 b7d7c6471106b110d33bc44a4c8a70df 288 Gene3D G3DSA:3.40.190.10 143 233 1.7E-76 T 18-10-2018 RU84_05190 f95873ef660cafb90e1048539409f6b1 255 Gene3D G3DSA:3.40.1210.10 1 254 8.1E-83 T 18-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RU84_05190 f95873ef660cafb90e1048539409f6b1 255 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 2 242 8.2E-67 T 18-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RU84_05190 f95873ef660cafb90e1048539409f6b1 255 Pfam PF01975 Survival protein SurE 3 186 2.0E-56 T 18-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RU84_05190 f95873ef660cafb90e1048539409f6b1 255 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 255 34.872 T 18-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 RU84_05190 f95873ef660cafb90e1048539409f6b1 255 SUPERFAMILY SSF64167 2 252 9.29E-76 T 18-10-2018 RU84_13640 80b4196e44f42d2a20372227ccd14212 330 Pfam PF08867 FRG domain 72 198 1.5E-21 T 18-10-2018 IPR014966 FRG domain RU84_13640 80b4196e44f42d2a20372227ccd14212 330 SMART SM00901 69 210 8.9E-22 T 18-10-2018 IPR014966 FRG domain RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 SUPERFAMILY SSF75516 4 165 1.09E-42 T 18-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 231 1.4E-20 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 SMART SM00421 175 232 2.0E-19 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 SUPERFAMILY SSF46894 172 238 9.52E-19 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 Pfam PF03472 Autoinducer binding domain 19 160 5.2E-39 T 18-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 Gene3D G3DSA:1.10.10.10 172 238 5.9E-28 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 2.7E-12 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 2.7E-12 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 2.7E-12 T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 ProSitePatterns PS00622 LuxR-type HTH domain signature. 192 219 - T 18-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 RU84_17755 6b666b42f8ded8b230dc129b3258fa59 238 Gene3D G3DSA:3.30.450.80 3 169 2.8E-55 T 18-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily RU84_01635 2e8e5caa523a261e2db044d0169fffd1 286 SUPERFAMILY SSF103481 186 283 2.35E-12 T 18-10-2018 RU84_01635 2e8e5caa523a261e2db044d0169fffd1 286 Pfam PF00892 EamA-like transporter family 147 278 1.4E-15 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 SUPERFAMILY SSF53067 149 386 3.52E-78 T 18-10-2018 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 Hamap MF_00020 Acetate kinase [ackA]. 1 390 158.344 T 18-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 Pfam PF00871 Acetokinase family 5 381 3.5E-127 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PIRSF PIRSF000722 1 391 2.0E-128 T 18-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 TIGRFAM TIGR00016 ackA: acetate kinase 4 386 8.1E-130 T 18-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 Gene3D G3DSA:3.30.420.40 189 398 2.3E-69 T 18-10-2018 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 SUPERFAMILY SSF53067 4 187 2.36E-58 T 18-10-2018 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 18-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 Gene3D G3DSA:3.30.420.40 1 186 1.0E-60 T 18-10-2018 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PRINTS PR00471 Acetate kinase family signature 368 380 4.0E-41 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PRINTS PR00471 Acetate kinase family signature 313 329 4.0E-41 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PRINTS PR00471 Acetate kinase family signature 194 215 4.0E-41 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PRINTS PR00471 Acetate kinase family signature 165 178 4.0E-41 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PRINTS PR00471 Acetate kinase family signature 291 304 4.0E-41 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_15940 987f369ec77c9a53d17ba7cc947fc185 400 PRINTS PR00471 Acetate kinase family signature 5 16 4.0E-41 T 18-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 RU84_01315 4e90568e934f9b4b563c1caedf739c4c 469 Gene3D G3DSA:1.20.1600.10 54 436 1.1E-32 T 18-10-2018 RU84_01315 4e90568e934f9b4b563c1caedf739c4c 469 SUPERFAMILY SSF56954 48 431 1.7E-41 T 18-10-2018 RU84_01315 4e90568e934f9b4b563c1caedf739c4c 469 Pfam PF02321 Outer membrane efflux protein 263 421 5.7E-7 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_01315 4e90568e934f9b4b563c1caedf739c4c 469 Pfam PF02321 Outer membrane efflux protein 59 233 3.0E-12 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_10155 4da5bd94d53f762370798ad83435ad4e 211 Gene3D G3DSA:2.30.110.10 1 207 7.4E-66 T 18-10-2018 IPR012349 FMN-binding split barrel GO:0048037 RU84_10155 4da5bd94d53f762370798ad83435ad4e 211 Pfam PF04299 Putative FMN-binding domain 1 168 2.7E-63 T 18-10-2018 IPR007396 Transcriptional regulator PAI 2-type RU84_10155 4da5bd94d53f762370798ad83435ad4e 211 SUPERFAMILY SSF50475 12 196 1.64E-39 T 18-10-2018 RU84_10155 4da5bd94d53f762370798ad83435ad4e 211 PIRSF PIRSF010372 1 211 2.6E-83 T 18-10-2018 IPR007396 Transcriptional regulator PAI 2-type RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 SMART SM00388 236 302 3.2E-13 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 SMART SM00387 346 461 9.8E-16 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 Gene3D G3DSA:3.30.565.10 306 466 3.5E-27 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 301 2.0E-9 T 18-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 SUPERFAMILY SSF55874 307 459 1.96E-28 T 18-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 SUPERFAMILY SSF47384 220 300 4.32E-15 T 18-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 458 1.1E-10 T 18-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 7 458 3.4E-105 T 18-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 RU84_06330 766ac2d450d4a47b5bdeb601ec990d35 467 Gene3D G3DSA:1.10.287.130 186 304 3.3E-19 T 18-10-2018 RU84_15005 a9c42f7ccf20e7ed0b2cef60fcdf768d 331 Gene3D G3DSA:1.20.1510.10 151 329 8.0E-8 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_15005 a9c42f7ccf20e7ed0b2cef60fcdf768d 331 SUPERFAMILY SSF161111 152 326 6.41E-30 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_15005 a9c42f7ccf20e7ed0b2cef60fcdf768d 331 Pfam PF01545 Cation efflux family 215 326 2.5E-8 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_15005 a9c42f7ccf20e7ed0b2cef60fcdf768d 331 SUPERFAMILY SSF55008 63 125 2.09E-6 T 18-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 RU84_14900 8fd8ba1dbc5283de5e15afbc8c871e6f 436 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_14900 8fd8ba1dbc5283de5e15afbc8c871e6f 436 ProSitePatterns PS00216 Sugar transport proteins signature 1. 73 89 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_14900 8fd8ba1dbc5283de5e15afbc8c871e6f 436 Pfam PF07690 Major Facilitator Superfamily 20 374 2.5E-33 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_14900 8fd8ba1dbc5283de5e15afbc8c871e6f 436 SUPERFAMILY SSF103473 12 423 3.92E-70 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_14900 8fd8ba1dbc5283de5e15afbc8c871e6f 436 Gene3D G3DSA:1.20.1250.20 12 433 2.1E-68 T 18-10-2018 RU84_14900 8fd8ba1dbc5283de5e15afbc8c871e6f 436 ProSitePatterns PS00216 Sugar transport proteins signature 1. 291 308 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 ProSitePatterns PS00080 Multicopper oxidases signature 2. 598 609 - T 18-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 26 615 2.0E-187 T 18-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 Pfam PF07732 Multicopper oxidase 32 145 1.4E-34 T 18-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 Pfam PF00394 Multicopper oxidase 159 332 8.3E-28 T 18-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 Gene3D G3DSA:2.60.40.420 16 144 6.8E-37 T 18-10-2018 IPR008972 Cupredoxin RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 ProSitePatterns PS00079 Multicopper oxidases signature 1. 593 613 - T 18-10-2018 IPR033138 Multicopper oxidases, conserved site RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 SUPERFAMILY SSF49503 16 173 4.8E-35 T 18-10-2018 IPR008972 Cupredoxin RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 SUPERFAMILY SSF49503 468 615 6.71E-36 T 18-10-2018 IPR008972 Cupredoxin RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 Gene3D G3DSA:2.60.40.420 156 361 4.0E-39 T 18-10-2018 IPR008972 Cupredoxin RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 Pfam PF07731 Multicopper oxidase 507 616 3.0E-27 T 18-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 RU84_15015 baf5134497c92d9dfcf5a6b58991226e 644 SUPERFAMILY SSF49503 156 362 4.23E-45 T 18-10-2018 IPR008972 Cupredoxin RU84_08205 e7c1099cbb944f5bfc953394963e7dc7 230 Gene3D G3DSA:3.40.50.880 2 228 8.1E-68 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_08205 e7c1099cbb944f5bfc953394963e7dc7 230 SUPERFAMILY SSF52317 1 227 3.31E-70 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_08205 e7c1099cbb944f5bfc953394963e7dc7 230 Pfam PF01965 DJ-1/PfpI family 28 226 1.0E-15 T 18-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RU84_09100 597eae9db385984f8e45002bcecdca32 430 SUPERFAMILY SSF47203 299 424 6.77E-37 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_09100 597eae9db385984f8e45002bcecdca32 430 Gene3D G3DSA:1.10.540.10 67 191 8.1E-20 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_09100 597eae9db385984f8e45002bcecdca32 430 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 398 417 - T 18-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 RU84_09100 597eae9db385984f8e45002bcecdca32 430 SUPERFAMILY SSF56645 74 284 1.83E-30 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_09100 597eae9db385984f8e45002bcecdca32 430 Gene3D G3DSA:2.40.110.10 211 297 1.5E-9 T 18-10-2018 RU84_09100 597eae9db385984f8e45002bcecdca32 430 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 79 189 3.0E-16 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_09100 597eae9db385984f8e45002bcecdca32 430 Gene3D G3DSA:1.20.140.10 298 428 7.7E-36 T 18-10-2018 RU84_09100 597eae9db385984f8e45002bcecdca32 430 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 300 424 7.1E-30 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_15065 b34d0d9b0682fcce3b40fcf3b20319e0 205 Gene3D G3DSA:3.90.79.10 2 181 1.1E-44 T 18-10-2018 RU84_15065 b34d0d9b0682fcce3b40fcf3b20319e0 205 Pfam PF00293 NUDIX domain 24 138 6.0E-14 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_15065 b34d0d9b0682fcce3b40fcf3b20319e0 205 SUPERFAMILY SSF55811 24 177 5.42E-29 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_09515 c1cc203bbbdd42088e68a82bef1052ad 226 Pfam PF06912 Protein of unknown function (DUF1275) 14 208 2.4E-31 T 18-10-2018 IPR010699 Protein of unknown function DUF1275 RU84_08995 ff42642c05e921e709dd89743550494b 522 SUPERFAMILY SSF53254 31 502 1.45E-48 T 18-10-2018 IPR029033 Histidine phosphatase superfamily RU84_08995 ff42642c05e921e709dd89743550494b 522 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 129 488 4.6E-12 T 18-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 RU84_03650 1960f4c5ad851fa1e1d57ce2dce7d701 291 SUPERFAMILY SSF52317 8 288 8.97E-52 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_03650 1960f4c5ad851fa1e1d57ce2dce7d701 291 PIRSF PIRSF037798 1 291 2.4E-161 T 18-10-2018 IPR017283 Protein/nucleic acid deglycase HchA GO:0036524 RU84_03650 1960f4c5ad851fa1e1d57ce2dce7d701 291 Pfam PF01965 DJ-1/PfpI family 77 198 7.9E-9 T 18-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 RU84_03650 1960f4c5ad851fa1e1d57ce2dce7d701 291 Gene3D G3DSA:3.40.50.880 4 291 4.8E-77 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 SUPERFAMILY SSF54506 3 276 5.5E-57 T 18-10-2018 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 18-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 Gene3D G3DSA:3.10.310.10 4 272 2.3E-111 T 18-10-2018 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 39.343 T 18-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 2.3E-95 T 18-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 Gene3D G3DSA:3.10.310.10 117 263 2.3E-111 T 18-10-2018 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 Pfam PF01678 Diaminopimelate epimerase 5 125 7.2E-33 T 18-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RU84_04345 feb6f52c53ee47ad73c619b1d4d0045e 281 Pfam PF01678 Diaminopimelate epimerase 155 268 1.2E-28 T 18-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 RU84_10610 79924b4420b3aab0f6483fe4aa81d04e 389 SUPERFAMILY SSF56935 36 365 7.33E-13 T 18-10-2018 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 3.1E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 3.1E-6 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 Gene3D G3DSA:1.10.10.60 1 59 2.3E-18 T 18-10-2018 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.8E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 SUPERFAMILY SSF48498 77 203 8.58E-36 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 Gene3D G3DSA:1.10.357.10 60 203 2.2E-46 T 18-10-2018 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 SUPERFAMILY SSF46689 4 80 1.33E-17 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_18175 e32ce789c3b559fbcba76774a11aaff3 203 Pfam PF08362 YcdC-like protein, C-terminal region 60 203 4.7E-53 T 18-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 RU84_12925 c1143e2ce4728c5fe3011f8f287f821e 381 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 201 210 - T 18-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 RU84_12925 c1143e2ce4728c5fe3011f8f287f821e 381 PIRSF PIRSF005096 19 380 7.4E-129 T 18-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 RU84_12925 c1143e2ce4728c5fe3011f8f287f821e 381 Gene3D G3DSA:2.70.98.10 28 379 1.4E-122 T 18-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 RU84_12925 c1143e2ce4728c5fe3011f8f287f821e 381 SUPERFAMILY SSF74650 26 377 4.52E-110 T 18-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 RU84_12925 c1143e2ce4728c5fe3011f8f287f821e 381 Pfam PF01263 Aldose 1-epimerase 38 376 1.4E-95 T 18-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 RU84_14920 6bb1528456d12f3a8ed52bf506ca02d5 377 TIGRFAM TIGR02484 CitB: CitB domain protein 15 374 5.7E-120 T 18-10-2018 IPR012830 Citrate utilization protein B RU84_14920 6bb1528456d12f3a8ed52bf506ca02d5 377 SUPERFAMILY SSF103501 158 368 1.7E-28 T 18-10-2018 IPR036197 NarG-like superfamily RU84_14920 6bb1528456d12f3a8ed52bf506ca02d5 377 SUPERFAMILY SSF46548 18 72 1.46E-6 T 18-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 RU84_02895 dcdcee9a4574ae65906bc5a157996ac2 254 Gene3D G3DSA:1.25.40.10 98 225 6.2E-5 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_02895 dcdcee9a4574ae65906bc5a157996ac2 254 Pfam PF05944 Phage small terminase subunit 39 171 1.0E-34 T 18-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 RU84_02895 dcdcee9a4574ae65906bc5a157996ac2 254 SUPERFAMILY SSF48452 98 229 5.12E-5 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_02895 dcdcee9a4574ae65906bc5a157996ac2 254 SMART SM00028 174 207 0.006 T 18-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 SUPERFAMILY SSF53383 2 357 8.03E-118 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 Gene3D G3DSA:3.90.1150.10 250 359 1.2E-44 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 PIRSF PIRSF000525 1 359 5.5E-150 T 18-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 357 2.9E-159 T 18-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 Pfam PF00266 Aminotransferase class-V 4 347 7.4E-58 T 18-10-2018 IPR000192 Aminotransferase class V domain RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 186 205 - T 18-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 Gene3D G3DSA:3.40.640.10 16 249 7.4E-95 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_04415 9f0e318407b2666a0b7d91c89fc39e03 359 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 358 50.678 T 18-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 RU84_18390 9a2e1fc56095ecdd71da7b932613d9b1 87 Pfam PF02583 Metal-sensitive transcriptional repressor 7 85 6.0E-24 T 18-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 RU84_18390 9a2e1fc56095ecdd71da7b932613d9b1 87 Gene3D G3DSA:1.20.58.1000 1 87 5.2E-25 T 18-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily RU84_16890 d040114bdfc7ae8504f8bc71eaf76165 121 Gene3D G3DSA:1.10.1660.10 1 121 5.5E-27 T 18-10-2018 RU84_16890 d040114bdfc7ae8504f8bc71eaf76165 121 Pfam PF13411 MerR HTH family regulatory protein 1 66 1.4E-18 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_16890 d040114bdfc7ae8504f8bc71eaf76165 121 SUPERFAMILY SSF46955 1 110 6.59E-24 T 18-10-2018 IPR009061 Putative DNA-binding domain superfamily RU84_16890 d040114bdfc7ae8504f8bc71eaf76165 121 SMART SM00422 1 69 2.4E-18 T 18-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 RU84_01130 2e3ddbe478f0d1e79c9d57946b987d71 625 Pfam PF02705 K+ potassium transporter 15 546 3.3E-205 T 18-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 RU84_01130 2e3ddbe478f0d1e79c9d57946b987d71 625 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 6 625 33.579 T 18-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup RU84_12235 19d47a61ab22214502eaacf7e2b9f525 418 Pfam PF13356 Arm DNA-binding domain 4 57 2.0E-7 T 18-10-2018 IPR025166 Integrase, DNA-binding domain RU84_12235 19d47a61ab22214502eaacf7e2b9f525 418 Pfam PF00589 Phage integrase family 216 344 5.7E-15 T 18-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 RU84_12235 19d47a61ab22214502eaacf7e2b9f525 418 Gene3D G3DSA:1.10.150.130 70 182 3.8E-6 T 18-10-2018 IPR010998 Integrase/recombinase, N-terminal RU84_12235 19d47a61ab22214502eaacf7e2b9f525 418 Gene3D G3DSA:1.10.443.10 201 378 1.6E-24 T 18-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 RU84_12235 19d47a61ab22214502eaacf7e2b9f525 418 SUPERFAMILY SSF56349 74 368 4.71E-36 T 18-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 RU84_15180 3a98fb334baa3cf9b81b4a73cf1eb83d 322 Gene3D G3DSA:3.60.40.10 94 320 6.0E-42 T 18-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RU84_15180 3a98fb334baa3cf9b81b4a73cf1eb83d 322 SMART SM00331 126 320 7.6E-11 T 18-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RU84_15180 3a98fb334baa3cf9b81b4a73cf1eb83d 322 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 153 313 3.5E-23 T 18-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 RU84_00200 21019f5b128bc1dbf62a2fbad5506a0a 217 SUPERFAMILY SSF55961 15 203 1.32E-34 T 18-10-2018 RU84_00200 21019f5b128bc1dbf62a2fbad5506a0a 217 Gene3D G3DSA:3.30.530.20 26 211 7.1E-48 T 18-10-2018 IPR023393 START-like domain superfamily RU84_00200 21019f5b128bc1dbf62a2fbad5506a0a 217 PIRSF PIRSF039033 2 215 2.7E-42 T 18-10-2018 IPR028347 START domain-containing protein RU84_00200 21019f5b128bc1dbf62a2fbad5506a0a 217 Pfam PF01852 START domain 33 192 7.8E-9 T 18-10-2018 IPR002913 START domain GO:0008289 RU84_10390 dd97d2499a63d6da746bde72987b36d6 205 SUPERFAMILY SSF46689 8 89 1.7E-15 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_10390 dd97d2499a63d6da746bde72987b36d6 205 Gene3D G3DSA:1.10.357.10 10 200 1.2E-33 T 18-10-2018 RU84_10390 dd97d2499a63d6da746bde72987b36d6 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 1.7E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10390 dd97d2499a63d6da746bde72987b36d6 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 1.7E-10 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_10390 dd97d2499a63d6da746bde72987b36d6 205 SUPERFAMILY SSF48498 87 182 3.91E-7 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_10390 dd97d2499a63d6da746bde72987b36d6 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 66 2.7E-14 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 Pfam PF00107 Zinc-binding dehydrogenase 151 270 9.4E-14 T 18-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 SMART SM00829 11 323 1.5E-6 T 18-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 Gene3D G3DSA:3.90.180.10 4 310 1.4E-86 T 18-10-2018 RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 SUPERFAMILY SSF51735 113 287 2.42E-43 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 90 2.5E-9 T 18-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 Gene3D G3DSA:3.40.50.720 122 293 1.4E-86 T 18-10-2018 RU84_00945 aac1d826546231f9a776f1cf3a325f70 325 SUPERFAMILY SSF50129 1 144 1.05E-30 T 18-10-2018 IPR011032 GroES-like superfamily RU84_13750 1085cdedb3bb1c68de3f72497e42ca7e 355 SUPERFAMILY SSF161070 35 351 3.14E-10 T 18-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 RU84_18690 cbbd5aa544a5e64ca0faa58f2e9c5bda 123 Pfam PF16884 N-terminal domain of oxidoreductase 1 57 9.2E-17 T 18-10-2018 RU84_18690 cbbd5aa544a5e64ca0faa58f2e9c5bda 123 Gene3D G3DSA:3.40.50.720 73 100 3.0E-30 T 18-10-2018 RU84_18690 cbbd5aa544a5e64ca0faa58f2e9c5bda 123 SUPERFAMILY SSF50129 7 89 1.57E-18 T 18-10-2018 IPR011032 GroES-like superfamily RU84_18690 cbbd5aa544a5e64ca0faa58f2e9c5bda 123 Gene3D G3DSA:3.90.180.10 1 72 3.0E-30 T 18-10-2018 RU84_12750 8cef24baa86f229e51c5ded6ae429db5 302 SUPERFAMILY SSF52402 6 210 1.58E-73 T 18-10-2018 RU84_12750 8cef24baa86f229e51c5ded6ae429db5 302 PIRSF PIRSF002936 1 302 1.6E-157 T 18-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RU84_12750 8cef24baa86f229e51c5ded6ae429db5 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 7.7E-65 T 18-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 RU84_12750 8cef24baa86f229e51c5ded6ae429db5 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 57.005 T 18-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RU84_12750 8cef24baa86f229e51c5ded6ae429db5 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.2E-161 T 18-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 RU84_12750 8cef24baa86f229e51c5ded6ae429db5 302 Gene3D G3DSA:3.40.50.620 7 212 4.2E-64 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_17895 3911eb47d6c297b3e5f840122f32410d 191 Pfam PF13548 Domain of unknown function (DUF4126) 7 179 1.6E-48 T 18-10-2018 IPR025196 Domain of unknown function DUF4126 RU84_09355 7e864db2552f7e6d4716a1fdacde2d16 373 Gene3D G3DSA:3.90.226.10 12 349 8.0E-91 T 18-10-2018 RU84_09355 7e864db2552f7e6d4716a1fdacde2d16 373 Pfam PF16113 Enoyl-CoA hydratase/isomerase 23 340 9.1E-87 T 18-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 RU84_09355 7e864db2552f7e6d4716a1fdacde2d16 373 SUPERFAMILY SSF52096 12 342 1.72E-52 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_16530 3bc28a60d47e95bdb6f6e0735376a0d1 85 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 18-10-2018 IPR001455 TusA-like domain RU84_16530 3bc28a60d47e95bdb6f6e0735376a0d1 85 Gene3D G3DSA:3.30.110.40 2 85 5.9E-28 T 18-10-2018 IPR036868 TusA-like domain superfamily RU84_16530 3bc28a60d47e95bdb6f6e0735376a0d1 85 SUPERFAMILY SSF64307 6 85 8.37E-22 T 18-10-2018 IPR036868 TusA-like domain superfamily RU84_16530 3bc28a60d47e95bdb6f6e0735376a0d1 85 Pfam PF01206 Sulfurtransferase TusA 11 84 3.0E-24 T 18-10-2018 IPR001455 TusA-like domain RU84_04485 7f14f92be0869315ce6238bcc8feab91 397 Pfam PF01594 AI-2E family transporter 11 343 3.8E-60 T 18-10-2018 IPR002549 Transmembrane protein TqsA-like RU84_17775 f692a6d5aa9812fcfdd4ac73854a1fdc 341 Gene3D G3DSA:3.90.226.10 3 340 3.6E-99 T 18-10-2018 RU84_17775 f692a6d5aa9812fcfdd4ac73854a1fdc 341 SUPERFAMILY SSF52096 3 326 4.25E-63 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_17775 f692a6d5aa9812fcfdd4ac73854a1fdc 341 Pfam PF16113 Enoyl-CoA hydratase/isomerase 16 330 1.6E-98 T 18-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 RU84_06635 e8cb1df0f2b51ff52a6f4482f6063b9b 279 Gene3D G3DSA:3.40.50.880 6 279 3.3E-78 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_06635 e8cb1df0f2b51ff52a6f4482f6063b9b 279 SUPERFAMILY SSF52317 24 278 4.06E-54 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_06635 e8cb1df0f2b51ff52a6f4482f6063b9b 279 Pfam PF17124 ThiJ/PfpI family-like 45 180 3.9E-13 T 18-10-2018 IPR032633 ThiJ/PfpI family-like RU84_00655 64ead3d1d6a7d117a31aacfee11e516f 321 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 20 318 4.2E-142 T 18-10-2018 IPR017625 PuuE allantoinase/chitin deacetylase 1 RU84_00655 64ead3d1d6a7d117a31aacfee11e516f 321 Pfam PF01522 Polysaccharide deacetylase 88 176 2.2E-5 T 18-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RU84_00655 64ead3d1d6a7d117a31aacfee11e516f 321 SUPERFAMILY SSF88713 20 318 3.06E-76 T 18-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RU84_00655 64ead3d1d6a7d117a31aacfee11e516f 321 Gene3D G3DSA:3.20.20.370 13 320 4.5E-93 T 18-10-2018 RU84_10680 bca5b86ec8f0e50c620d75e213676c40 308 SUPERFAMILY SSF46785 10 120 8.71E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_10680 bca5b86ec8f0e50c620d75e213676c40 308 Gene3D G3DSA:1.10.10.10 9 97 4.0E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10680 bca5b86ec8f0e50c620d75e213676c40 308 Pfam PF03466 LysR substrate binding domain 99 296 1.9E-26 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_10680 bca5b86ec8f0e50c620d75e213676c40 308 Gene3D G3DSA:3.40.190.290 99 303 2.4E-30 T 18-10-2018 RU84_10680 bca5b86ec8f0e50c620d75e213676c40 308 SUPERFAMILY SSF53850 97 303 3.57E-32 T 18-10-2018 RU84_10680 bca5b86ec8f0e50c620d75e213676c40 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 71 1.5E-14 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_18745 9509546a849306c2b12c2af79a4e7ee7 284 Pfam PF00665 Integrase core domain 119 233 2.2E-29 T 18-10-2018 IPR001584 Integrase, catalytic core GO:0015074 RU84_18745 9509546a849306c2b12c2af79a4e7ee7 284 SUPERFAMILY SSF53098 113 273 5.92E-38 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_18745 9509546a849306c2b12c2af79a4e7ee7 284 Gene3D G3DSA:3.30.420.10 115 277 2.1E-11 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_01750 1ef97154d6e6ed3af728106d7924f16e 447 Pfam PF04996 Succinylarginine dihydrolase 3 446 2.6E-221 T 18-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RU84_01750 1ef97154d6e6ed3af728106d7924f16e 447 Gene3D G3DSA:3.75.10.20 1 447 4.7E-208 T 18-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RU84_01750 1ef97154d6e6ed3af728106d7924f16e 447 SUPERFAMILY SSF55909 3 447 9.12E-208 T 18-10-2018 RU84_01750 1ef97154d6e6ed3af728106d7924f16e 447 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 447 59.383 T 18-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RU84_01750 1ef97154d6e6ed3af728106d7924f16e 447 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 446 2.2E-246 T 18-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 RU84_08650 b4177e135279873dab44f00179bed08c 298 SUPERFAMILY SSF46785 3 114 8.39E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08650 b4177e135279873dab44f00179bed08c 298 Gene3D G3DSA:3.40.190.10 85 200 1.1E-6 T 18-10-2018 RU84_08650 b4177e135279873dab44f00179bed08c 298 Gene3D G3DSA:1.10.10.10 1 84 6.6E-14 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08650 b4177e135279873dab44f00179bed08c 298 Gene3D G3DSA:3.40.190.10 201 265 2.9E-5 T 18-10-2018 RU84_08650 b4177e135279873dab44f00179bed08c 298 Pfam PF03466 LysR substrate binding domain 91 275 1.5E-20 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08650 b4177e135279873dab44f00179bed08c 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.5E-11 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08650 b4177e135279873dab44f00179bed08c 298 SUPERFAMILY SSF53850 91 277 1.85E-19 T 18-10-2018 RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 SUPERFAMILY SSF52283 1 132 2.08E-25 T 18-10-2018 RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 Gene3D G3DSA:3.40.50.720 3 312 3.6E-102 T 18-10-2018 RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 SUPERFAMILY SSF51735 99 286 2.18E-53 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 285 4.9E-55 T 18-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 Gene3D G3DSA:3.40.50.720 96 285 3.6E-102 T 18-10-2018 RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 175 - T 18-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 RU84_06005 42021533c55bbf8ca5ed131ec9c3f4cd 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 317 6.6E-26 T 18-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 RU84_09340 215c4e9cdde0b0d9b1e31bb2c3df19a7 228 Pfam PF02224 Cytidylate kinase 6 222 2.5E-66 T 18-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RU84_09340 215c4e9cdde0b0d9b1e31bb2c3df19a7 228 Gene3D G3DSA:3.40.50.300 1 227 3.0E-76 T 18-10-2018 RU84_09340 215c4e9cdde0b0d9b1e31bb2c3df19a7 228 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 220 2.8E-70 T 18-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RU84_09340 215c4e9cdde0b0d9b1e31bb2c3df19a7 228 Hamap MF_00238 Cytidylate kinase [cmk]. 4 225 32.527 T 18-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 RU84_09340 215c4e9cdde0b0d9b1e31bb2c3df19a7 228 SUPERFAMILY SSF52540 4 224 2.64E-43 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00825 15ccf438244279a7dd1882b3c42883b4 252 Pfam PF16956 Putative general bacterial porin 1 149 6.1E-19 T 18-10-2018 IPR031593 Putative general bacterial porin RU84_00825 15ccf438244279a7dd1882b3c42883b4 252 Pfam PF16956 Putative general bacterial porin 161 241 1.8E-6 T 18-10-2018 IPR031593 Putative general bacterial porin RU84_00825 15ccf438244279a7dd1882b3c42883b4 252 SUPERFAMILY SSF56935 30 252 1.71E-7 T 18-10-2018 RU84_09720 06a929ff46c69b0b9cf8c0bf2eef0ae5 299 Gene3D G3DSA:3.40.190.290 97 294 3.3E-26 T 18-10-2018 RU84_09720 06a929ff46c69b0b9cf8c0bf2eef0ae5 299 Pfam PF03466 LysR substrate binding domain 90 294 1.7E-23 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_09720 06a929ff46c69b0b9cf8c0bf2eef0ae5 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 4.9E-18 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_09720 06a929ff46c69b0b9cf8c0bf2eef0ae5 299 SUPERFAMILY SSF53850 91 297 8.15E-24 T 18-10-2018 RU84_09720 06a929ff46c69b0b9cf8c0bf2eef0ae5 299 Gene3D G3DSA:1.10.10.10 1 86 1.1E-19 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_09720 06a929ff46c69b0b9cf8c0bf2eef0ae5 299 SUPERFAMILY SSF46785 5 84 1.63E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08425 f77c47155f434059bb5361bdce1443cd 294 Pfam PF12833 Helix-turn-helix domain 214 288 1.7E-20 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08425 f77c47155f434059bb5361bdce1443cd 294 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 245 287 - T 18-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 RU84_08425 f77c47155f434059bb5361bdce1443cd 294 Gene3D G3DSA:1.10.10.60 188 292 3.6E-28 T 18-10-2018 RU84_08425 f77c47155f434059bb5361bdce1443cd 294 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 179 1.5E-47 T 18-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal RU84_08425 f77c47155f434059bb5361bdce1443cd 294 SMART SM00342 208 291 3.8E-26 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_08425 f77c47155f434059bb5361bdce1443cd 294 SUPERFAMILY SSF46689 244 291 9.41E-10 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_08425 f77c47155f434059bb5361bdce1443cd 294 SUPERFAMILY SSF46689 192 242 6.28E-12 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_16540 02e46e70ce1db74121d7f0fb3dbcdf11 519 Gene3D G3DSA:3.60.110.10 221 481 3.1E-13 T 18-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RU84_16540 02e46e70ce1db74121d7f0fb3dbcdf11 519 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 20 496 22.427 T 18-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 RU84_16540 02e46e70ce1db74121d7f0fb3dbcdf11 519 Pfam PF00795 Carbon-nitrogen hydrolase 228 476 5.1E-30 T 18-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 RU84_16540 02e46e70ce1db74121d7f0fb3dbcdf11 519 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 73 458 1.4E-94 T 18-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 RU84_16540 02e46e70ce1db74121d7f0fb3dbcdf11 519 SUPERFAMILY SSF56317 224 489 1.31E-44 T 18-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily RU84_04495 711e6bd2800599e69fa92bd208a21c75 617 SUPERFAMILY SSF51126 7 458 1.21E-18 T 18-10-2018 IPR011050 Pectin lyase fold/virulence factor RU84_04495 711e6bd2800599e69fa92bd208a21c75 617 TIGRFAM TIGR04212 GlyGly_RbtA: rhombotarget A 1 615 2.1E-304 T 18-10-2018 IPR026454 Rhombotarget A RU84_04495 711e6bd2800599e69fa92bd208a21c75 617 TIGRFAM TIGR04214 CSLREA_Nterm: CSLREA domain 24 47 9.7E-8 T 18-10-2018 IPR026457 CSLREA domain RU84_13650 d70053b0bc27aa6562738f721f4e09ca 294 SUPERFAMILY SSF56219 3 288 7.72E-23 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_13650 d70053b0bc27aa6562738f721f4e09ca 294 Gene3D G3DSA:3.60.10.10 2 288 1.4E-17 T 18-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily RU84_03290 668fcaeb8aa911a53e2f50e1028c5af6 96 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 30 50 - T 18-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 RU84_03290 668fcaeb8aa911a53e2f50e1028c5af6 96 Gene3D G3DSA:3.10.50.40 1 91 3.7E-31 T 18-10-2018 RU84_03290 668fcaeb8aa911a53e2f50e1028c5af6 96 Pfam PF00639 PPIC-type PPIASE domain 14 88 1.3E-20 T 18-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 RU84_03290 668fcaeb8aa911a53e2f50e1028c5af6 96 SUPERFAMILY SSF54534 4 88 6.15E-27 T 18-10-2018 RU84_07620 c0efb47930fce8e6421ea83f80d1d6a2 572 Pfam PF02378 Phosphotransferase system, EIIC 243 505 3.5E-19 T 18-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 RU84_07620 c0efb47930fce8e6421ea83f80d1d6a2 572 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 118 203 3.1E-17 T 18-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 RU84_07620 c0efb47930fce8e6421ea83f80d1d6a2 572 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 224 561 2.6E-133 T 18-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 RU84_07620 c0efb47930fce8e6421ea83f80d1d6a2 572 SUPERFAMILY SSF52794 116 215 7.15E-35 T 18-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 RU84_07620 c0efb47930fce8e6421ea83f80d1d6a2 572 Gene3D G3DSA:3.40.50.2300 104 215 1.2E-37 T 18-10-2018 RU84_07620 c0efb47930fce8e6421ea83f80d1d6a2 572 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 117 200 1.1E-32 T 18-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 RU84_05765 31be841823d10ebe89884aa79b5f7f82 109 Pfam PF00893 Small Multidrug Resistance protein 1 92 3.6E-29 T 18-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RU84_05765 31be841823d10ebe89884aa79b5f7f82 109 SUPERFAMILY SSF103481 4 105 7.19E-21 T 18-10-2018 RU84_05765 31be841823d10ebe89884aa79b5f7f82 109 Gene3D G3DSA:1.10.3730.20 1 108 1.8E-38 T 18-10-2018 RU84_03350 b111ba700084b9e77f734a4e2e4c78ab 113 Gene3D G3DSA:2.30.29.80 1 113 5.1E-49 T 18-10-2018 RU84_03350 b111ba700084b9e77f734a4e2e4c78ab 113 Pfam PF07411 Domain of unknown function (DUF1508) 61 108 3.0E-21 T 18-10-2018 IPR010879 Domain of unknown function DUF1508 RU84_03350 b111ba700084b9e77f734a4e2e4c78ab 113 Pfam PF07411 Domain of unknown function (DUF1508) 11 57 9.9E-22 T 18-10-2018 IPR010879 Domain of unknown function DUF1508 RU84_03350 b111ba700084b9e77f734a4e2e4c78ab 113 SUPERFAMILY SSF160113 61 109 1.05E-16 T 18-10-2018 IPR036913 YegP-like superfamily RU84_03350 b111ba700084b9e77f734a4e2e4c78ab 113 SUPERFAMILY SSF160113 1 57 2.75E-19 T 18-10-2018 IPR036913 YegP-like superfamily RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 Pfam PF00561 alpha/beta hydrolase fold 28 137 4.7E-12 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 PRINTS PR00412 Epoxide hydrolase signature 230 246 6.1E-5 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 PRINTS PR00412 Epoxide hydrolase signature 33 51 6.1E-5 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 PRINTS PR00412 Epoxide hydrolase signature 99 112 6.1E-5 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 PRINTS PR00412 Epoxide hydrolase signature 263 285 6.1E-5 T 18-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 SUPERFAMILY SSF53474 9 288 6.95E-42 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_16935 43fb8fa6412daf8ba2d45523b387b54c 290 Gene3D G3DSA:3.40.50.1820 5 290 2.7E-39 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_13220 fa5c858c28201bd5617bf18b06885e15 314 Pfam PF08878 Domain of unknown function (DUF1837) 54 290 1.2E-29 T 18-10-2018 IPR014976 Protein of unknown function DUF1837 RU84_14825 8ce16ffa550ba79938471088bc2404c4 427 SUPERFAMILY SSF47240 69 401 5.13E-98 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_14825 8ce16ffa550ba79938471088bc2404c4 427 PIRSF PIRSF000355 78 427 5.4E-139 T 18-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14825 8ce16ffa550ba79938471088bc2404c4 427 Pfam PF00268 Ribonucleotide reductase, small chain 108 395 2.3E-86 T 18-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 RU84_14825 8ce16ffa550ba79938471088bc2404c4 427 Gene3D G3DSA:1.10.620.20 85 421 8.4E-111 T 18-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RU84_17695 5f2da316a63d144efd2ab30a859b5dcd 130 PIRSF PIRSF005610 1 126 6.9E-8 T 18-10-2018 IPR007360 Invasion gene expression up-regulator, SirB RU84_17695 5f2da316a63d144efd2ab30a859b5dcd 130 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 127 5.9E-18 T 18-10-2018 IPR007360 Invasion gene expression up-regulator, SirB RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 ProSitePatterns PS00216 Sugar transport proteins signature 1. 61 77 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 Gene3D G3DSA:1.20.1250.20 1 383 9.3E-66 T 18-10-2018 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 217 234 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 274 295 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 14 30 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 299 319 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 334 357 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 159 179 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 364 383 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 43 62 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 74 98 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 101 122 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 246 266 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 PRINTS PR01035 Tetracycline resistance protein signature 131 153 3.3E-87 T 18-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 SUPERFAMILY SSF103473 2 386 4.32E-62 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 Pfam PF07690 Major Facilitator Superfamily 8 222 4.5E-37 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_01820 e46bcbdce9d3cb928acca9309d406494 394 Pfam PF07690 Major Facilitator Superfamily 237 389 1.2E-10 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_17820 c8be6a64beb744a37e2bdefd5a229c37 119 SUPERFAMILY SSF55298 7 118 9.11E-27 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_17820 c8be6a64beb744a37e2bdefd5a229c37 119 Gene3D G3DSA:3.30.1330.40 1 119 1.3E-34 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_17820 c8be6a64beb744a37e2bdefd5a229c37 119 Pfam PF01042 Endoribonuclease L-PSP 16 117 1.1E-21 T 18-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 Gene3D G3DSA:3.40.190.10 168 266 4.6E-55 T 18-10-2018 RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 SUPERFAMILY SSF53850 88 294 1.16E-37 T 18-10-2018 RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 SUPERFAMILY SSF46785 4 81 3.74E-16 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 Gene3D G3DSA:3.40.190.10 88 290 4.6E-55 T 18-10-2018 RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 Pfam PF03466 LysR substrate binding domain 97 293 3.6E-19 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.0E-12 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_08645 fa16a90cf0125657e9953877ee5c2c24 298 Gene3D G3DSA:1.10.10.10 1 84 1.4E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_06450 3a261689384201d931542d7e1e434f33 231 SUPERFAMILY SSF161098 25 221 4.06E-42 T 18-10-2018 IPR035906 MetI-like superfamily RU84_06450 3a261689384201d931542d7e1e434f33 231 Gene3D G3DSA:1.10.3720.10 21 230 2.2E-44 T 18-10-2018 IPR035906 MetI-like superfamily RU84_06450 3a261689384201d931542d7e1e434f33 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 63 228 7.3E-18 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_11535 746814860ed4732a69c46ceee3d04708 185 SUPERFAMILY SSF81342 4 181 2.12E-33 T 18-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 RU84_11535 746814860ed4732a69c46ceee3d04708 185 Pfam PF01292 Prokaryotic cytochrome b561 9 181 2.3E-26 T 18-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 191 207 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 587 616 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 250 265 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 389 409 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 545 565 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 138 151 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 719 745 5.9E-68 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 Pfam PF00311 Phosphoenolpyruvate carboxylase 134 894 4.1E-280 T 18-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 139 150 - T 18-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 2 894 18.644 T 18-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 547 559 - T 18-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 Gene3D G3DSA:1.20.1440.90 305 392 3.9E-22 T 18-10-2018 RU84_00160 45e8c79f41288d78ffd85f8dc7c211b6 894 SUPERFAMILY SSF51621 6 894 0.0 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_13605 1209dcc4d929066be873fcf8ae6686c8 342 Pfam PF13935 Ead/Ea22-like protein 11 236 2.3E-26 T 18-10-2018 IPR025153 Ead/Ea22-like protein RU84_06905 141941c45a4e1a8c046f6889507e527b 570 SMART SM00382 12 168 8.8E-4 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_06905 141941c45a4e1a8c046f6889507e527b 570 SUPERFAMILY SSF52540 3 178 4.81E-28 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_06905 141941c45a4e1a8c046f6889507e527b 570 Pfam PF14493 Helix-turn-helix domain 466 566 4.5E-18 T 18-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 RU84_06905 141941c45a4e1a8c046f6889507e527b 570 Pfam PF05970 PIF1-like helicase 196 297 1.4E-7 T 18-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 RU84_06905 141941c45a4e1a8c046f6889507e527b 570 Pfam PF05970 PIF1-like helicase 11 182 3.1E-37 T 18-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 RU84_06905 141941c45a4e1a8c046f6889507e527b 570 Gene3D G3DSA:3.40.50.300 1 174 2.7E-32 T 18-10-2018 RU84_06905 141941c45a4e1a8c046f6889507e527b 570 Gene3D G3DSA:3.40.50.300 184 398 1.9E-6 T 18-10-2018 RU84_06905 141941c45a4e1a8c046f6889507e527b 570 SUPERFAMILY SSF52540 125 411 1.56E-39 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 Gene3D G3DSA:2.40.420.20 280 350 5.0E-74 T 18-10-2018 RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 Gene3D G3DSA:2.40.50.100 58 204 5.0E-74 T 18-10-2018 RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 SUPERFAMILY SSF111369 48 273 1.09E-20 T 18-10-2018 RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 Gene3D G3DSA:2.40.30.170 46 279 5.0E-74 T 18-10-2018 RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 351 2.5E-67 T 18-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 267 1.9E-17 T 18-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain RU84_00170 78ff8d3f4ad62ad428ecee05172acb89 366 Gene3D G3DSA:1.10.287.470 92 157 5.0E-74 T 18-10-2018 RU84_11895 6028a1feb575f7fcb1b7926ef2daf594 363 Pfam PF01435 Peptidase family M48 176 353 4.8E-23 T 18-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 RU84_17945 1fd2748ca34a47e4c3b388ead6289c3b 553 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 546 1.2E-226 T 18-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RU84_17945 1fd2748ca34a47e4c3b388ead6289c3b 553 Pfam PF02652 L-lactate permease 17 543 2.0E-216 T 18-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 RU84_03160 9bc76ff30c604d222ab934aa7b65b7f7 213 Pfam PF03006 Haemolysin-III related 12 205 1.0E-33 T 18-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 RU84_03160 9bc76ff30c604d222ab934aa7b65b7f7 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 13 212 5.1E-60 T 18-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 RU84_15315 46700e4a9c345032ae32aa7b52f1d52b 416 SUPERFAMILY SSF103473 12 401 7.59E-33 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_15315 46700e4a9c345032ae32aa7b52f1d52b 416 Pfam PF05977 Transmembrane secretion effector 6 396 3.1E-26 T 18-10-2018 IPR010290 Transmembrane secretion effector RU84_15315 46700e4a9c345032ae32aa7b52f1d52b 416 Gene3D G3DSA:1.20.1250.20 10 401 4.2E-26 T 18-10-2018 RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 SUPERFAMILY SSF46785 8 82 2.72E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 78 1.5E-13 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 SMART SM00345 19 78 7.1E-14 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 1.6E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 1.6E-6 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 Pfam PF07729 FCD domain 110 221 1.5E-20 T 18-10-2018 IPR011711 GntR, C-terminal RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 Gene3D G3DSA:1.20.120.530 105 236 2.4E-25 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 Gene3D G3DSA:1.10.10.10 11 85 8.5E-18 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 SUPERFAMILY SSF48008 108 229 1.12E-24 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_08150 ef7057e07b85f8478f8c17b82d3e40e8 238 SMART SM00895 107 228 6.5E-19 T 18-10-2018 IPR011711 GntR, C-terminal RU84_10650 c10fc0908d6657dd4d6ae8cba94a5a79 94 Pfam PF07045 Domain of unknown function (DUF1330) 2 94 4.4E-37 T 18-10-2018 IPR010753 Domain of unknown function DUF1330 RU84_10650 c10fc0908d6657dd4d6ae8cba94a5a79 94 SUPERFAMILY SSF54909 1 94 6.26E-33 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_10650 c10fc0908d6657dd4d6ae8cba94a5a79 94 Gene3D G3DSA:3.30.70.100 1 94 2.6E-36 T 18-10-2018 RU84_09175 e08ddcfead8664273f0177d5795b59d4 489 SMART SM00044 191 388 3.6E-15 T 18-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RU84_09175 e08ddcfead8664273f0177d5795b59d4 489 Gene3D G3DSA:3.30.70.1230 218 412 4.0E-64 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_09175 e08ddcfead8664273f0177d5795b59d4 489 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 224 407 5.3E-34 T 18-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 RU84_09175 e08ddcfead8664273f0177d5795b59d4 489 SUPERFAMILY SSF55073 223 407 3.61E-54 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_05080 0b7c31c6629e6dfd771b72c112836d26 233 Gene3D G3DSA:3.30.110.170 34 225 1.7E-19 T 18-10-2018 RU84_05080 0b7c31c6629e6dfd771b72c112836d26 233 Gene3D G3DSA:3.30.70.2970 44 146 1.7E-19 T 18-10-2018 RU84_05080 0b7c31c6629e6dfd771b72c112836d26 233 Pfam PF04402 Protein of unknown function (DUF541) 32 227 1.1E-24 T 18-10-2018 IPR007497 Protein of unknown function DUF541 RU84_05935 87a67b177ecc613d78696ffaa9106172 81 Gene3D G3DSA:3.30.110.40 2 81 2.9E-13 T 18-10-2018 IPR036868 TusA-like domain superfamily RU84_05935 87a67b177ecc613d78696ffaa9106172 81 Pfam PF01206 Sulfurtransferase TusA 11 79 3.7E-15 T 18-10-2018 IPR001455 TusA-like domain RU84_05935 87a67b177ecc613d78696ffaa9106172 81 SUPERFAMILY SSF64307 7 79 6.28E-16 T 18-10-2018 IPR036868 TusA-like domain superfamily RU84_01610 a8ffce47411cb00ab36112009322cf7e 324 Pfam PF00561 alpha/beta hydrolase fold 43 293 3.2E-15 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_01610 a8ffce47411cb00ab36112009322cf7e 324 SUPERFAMILY SSF53474 39 319 1.47E-41 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_01610 a8ffce47411cb00ab36112009322cf7e 324 Gene3D G3DSA:3.40.50.1820 36 324 5.6E-85 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_08880 f5c6a9cefd1a38687cb91c70606f2ce4 124 SUPERFAMILY SSF74653 30 123 3.92E-9 T 18-10-2018 RU84_08880 f5c6a9cefd1a38687cb91c70606f2ce4 124 Gene3D G3DSA:3.30.1150.10 26 122 2.3E-18 T 18-10-2018 RU84_08880 f5c6a9cefd1a38687cb91c70606f2ce4 124 Pfam PF13103 TonB C terminal 38 118 1.4E-7 T 18-10-2018 RU84_09070 24482f1471a526a527b703e4b6a2c824 479 SUPERFAMILY SSF103473 17 473 4.19E-60 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_09070 24482f1471a526a527b703e4b6a2c824 479 Pfam PF07690 Major Facilitator Superfamily 25 418 5.9E-47 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_09070 24482f1471a526a527b703e4b6a2c824 479 Gene3D G3DSA:1.20.1720.10 20 225 2.1E-38 T 18-10-2018 RU84_09070 24482f1471a526a527b703e4b6a2c824 479 Gene3D G3DSA:1.20.1250.20 268 473 6.9E-18 T 18-10-2018 RU84_09070 24482f1471a526a527b703e4b6a2c824 479 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 21 431 4.9E-71 T 18-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 260 279 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 1.1E-26 T 18-10-2018 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 Gene3D G3DSA:1.10.3860.10 19 461 2.8E-108 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 SUPERFAMILY SSF118215 29 442 2.62E-98 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_04990 4d353827378c5e463e5878b14bb655e1 464 Pfam PF00375 Sodium:dicarboxylate symporter family 29 442 9.8E-104 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_10375 baf45a92efce062687e6628e75ef396e 423 SUPERFAMILY SSF56935 79 413 2.46E-28 T 18-10-2018 RU84_10375 baf45a92efce062687e6628e75ef396e 423 Gene3D G3DSA:2.40.160.10 211 423 6.6E-8 T 18-10-2018 IPR023614 Porin domain superfamily RU84_14150 4a0628f2a820bb4d9b5d76721c31f149 93 Pfam PF06147 Protein of unknown function (DUF968) 5 58 4.9E-10 T 18-10-2018 IPR010373 Protein of unknown function DUF968 RU84_18640 6d2a0cc41f469516af4f64490d28366d 202 SUPERFAMILY SSF51735 2 175 2.23E-27 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_18640 6d2a0cc41f469516af4f64490d28366d 202 Pfam PF05368 NmrA-like family 2 134 4.8E-12 T 18-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 RU84_18640 6d2a0cc41f469516af4f64490d28366d 202 Gene3D G3DSA:3.40.50.720 1 202 1.7E-25 T 18-10-2018 RU84_06355 feeacf79bbf0babc98d8a93a4f537544 399 SUPERFAMILY SSF53335 16 350 6.05E-77 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_06355 feeacf79bbf0babc98d8a93a4f537544 399 PIRSF PIRSF003085 10 398 6.3E-118 T 18-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 RU84_06355 feeacf79bbf0babc98d8a93a4f537544 399 Pfam PF02353 Mycolic acid cyclopropane synthetase 125 388 3.1E-81 T 18-10-2018 RU84_06355 feeacf79bbf0babc98d8a93a4f537544 399 Gene3D G3DSA:3.40.50.150 129 398 1.0E-96 T 18-10-2018 RU84_15920 ca77ceca549419a1d045cecb05f42b31 170 SUPERFAMILY SSF52540 2 161 7.03E-24 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_15920 ca77ceca549419a1d045cecb05f42b31 170 Gene3D G3DSA:3.40.50.300 1 163 1.1E-62 T 18-10-2018 RU84_15920 ca77ceca549419a1d045cecb05f42b31 170 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 4 159 1.7E-56 T 18-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 RU84_15920 ca77ceca549419a1d045cecb05f42b31 170 Pfam PF01202 Shikimate kinase 10 161 2.0E-15 T 18-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 RU84_16545 e7c654e96457cdd0c4c6aad3db30cc3b 112 Pfam PF01588 Putative tRNA binding domain 14 110 1.3E-13 T 18-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 RU84_16545 e7c654e96457cdd0c4c6aad3db30cc3b 112 Gene3D G3DSA:2.40.50.140 1 112 8.5E-32 T 18-10-2018 RU84_16545 e7c654e96457cdd0c4c6aad3db30cc3b 112 SUPERFAMILY SSF50249 4 111 7.43E-31 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_16545 e7c654e96457cdd0c4c6aad3db30cc3b 112 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 6 111 9.1E-49 T 18-10-2018 IPR008231 Probable chaperone CsaA RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 TIGRFAM TIGR00510 lipA: lipoyl synthase 29 311 6.0E-121 T 18-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 PIRSF PIRSF005963 6 324 6.1E-126 T 18-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 SMART SM00729 81 286 7.2E-17 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 Hamap MF_00206 Lipoyl synthase [lipA]. 1 320 141.831 T 18-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 Gene3D G3DSA:3.20.20.70 76 283 7.8E-19 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 Pfam PF04055 Radical SAM superfamily 88 248 9.8E-12 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_08805 a1d843a7d82661ffb62a4171e5214c90 328 SUPERFAMILY SSF102114 49 312 5.49E-59 T 18-10-2018 RU84_18875 e1b1e0bb323dc50faff91a8537874c6e 107 SUPERFAMILY SSF46785 2 97 2.48E-8 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_18875 e1b1e0bb323dc50faff91a8537874c6e 107 Gene3D G3DSA:1.10.10.10 1 107 1.3E-7 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_10750 dc578e346809aa0ea4bc3a467edc1b5f 166 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 18 166 8.4E-57 T 18-10-2018 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit RU84_10750 dc578e346809aa0ea4bc3a467edc1b5f 166 Gene3D G3DSA:3.30.300.130 4 104 2.9E-26 T 18-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RU84_10750 dc578e346809aa0ea4bc3a467edc1b5f 166 SUPERFAMILY SSF117916 8 102 1.11E-24 T 18-10-2018 IPR034904 Fe-S cluster assembly domain superfamily RU84_10750 dc578e346809aa0ea4bc3a467edc1b5f 166 Pfam PF01883 Iron-sulfur cluster assembly protein 10 71 2.2E-13 T 18-10-2018 IPR002744 MIP18 family-like RU84_06890 d7f0a07e5b2f20c620b0a6d1bba239b6 396 Gene3D G3DSA:3.30.450.40 23 205 3.3E-37 T 18-10-2018 IPR029016 GAF-like domain superfamily RU84_06890 d7f0a07e5b2f20c620b0a6d1bba239b6 396 SUPERFAMILY SSF46894 218 282 2.83E-5 T 18-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 RU84_06890 d7f0a07e5b2f20c620b0a6d1bba239b6 396 Gene3D G3DSA:1.25.40.10 286 390 5.9E-5 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06890 d7f0a07e5b2f20c620b0a6d1bba239b6 396 SMART SM00862 226 291 0.0093 T 18-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 RU84_14615 20fa6d4e403d00cd9e545ab9fe0f5ed0 197 Pfam PF01810 LysE type translocator 12 181 3.3E-12 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_10825 43aead09278f11f12842b44fe36513ab 302 Pfam PF00892 EamA-like transporter family 16 148 1.8E-13 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_10825 43aead09278f11f12842b44fe36513ab 302 Pfam PF00892 EamA-like transporter family 166 299 2.6E-16 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_10825 43aead09278f11f12842b44fe36513ab 302 SUPERFAMILY SSF103481 203 300 2.09E-12 T 18-10-2018 RU84_10825 43aead09278f11f12842b44fe36513ab 302 SUPERFAMILY SSF103481 72 153 1.83E-9 T 18-10-2018 RU84_11410 74617047e082751b08d7c9f3637d7455 471 SUPERFAMILY SSF103088 360 468 2.22E-35 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_11410 74617047e082751b08d7c9f3637d7455 471 PRINTS PR01021 OMPA domain signature 369 391 4.0E-11 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_11410 74617047e082751b08d7c9f3637d7455 471 PRINTS PR01021 OMPA domain signature 399 414 4.0E-11 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_11410 74617047e082751b08d7c9f3637d7455 471 PRINTS PR01021 OMPA domain signature 414 430 4.0E-11 T 18-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 RU84_11410 74617047e082751b08d7c9f3637d7455 471 Gene3D G3DSA:3.30.1330.60 332 471 6.2E-39 T 18-10-2018 IPR036737 OmpA-like domain superfamily RU84_11410 74617047e082751b08d7c9f3637d7455 471 ProSitePatterns PS01068 OmpA-like domain. 401 445 - T 18-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 RU84_11410 74617047e082751b08d7c9f3637d7455 471 Pfam PF00691 OmpA family 368 463 1.4E-22 T 18-10-2018 IPR006665 OmpA-like domain RU84_14915 e320c58ef42c8b3ae4f00f94f84966ce 468 SUPERFAMILY SSF51905 2 461 6.32E-38 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_14915 e320c58ef42c8b3ae4f00f94f84966ce 468 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 3 459 2.6E-199 T 18-10-2018 IPR012831 Precorrin 3B synthase CobZ RU84_14915 e320c58ef42c8b3ae4f00f94f84966ce 468 Gene3D G3DSA:3.90.700.10 236 397 1.8E-90 T 18-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_14915 e320c58ef42c8b3ae4f00f94f84966ce 468 SUPERFAMILY SSF56425 236 396 1.74E-25 T 18-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_14915 e320c58ef42c8b3ae4f00f94f84966ce 468 Pfam PF00890 FAD binding domain 3 432 1.7E-33 T 18-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_14915 e320c58ef42c8b3ae4f00f94f84966ce 468 Gene3D G3DSA:3.50.50.60 3 455 1.8E-90 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 Gene3D G3DSA:3.40.50.1100 17 350 3.4E-115 T 18-10-2018 RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 Gene3D G3DSA:3.40.50.1100 65 161 3.4E-115 T 18-10-2018 RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 TIGRFAM TIGR00260 thrC: threonine synthase 11 350 3.4E-91 T 18-10-2018 IPR004450 Threonine synthase-like RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 PIRSF PIRSF038945 1 375 7.3E-151 T 18-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 343 8.7E-65 T 18-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 57 70 - T 18-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 RU84_17195 fc4d6aa4c7644a040fb228e1ac131f8a 379 SUPERFAMILY SSF53686 11 376 3.14E-101 T 18-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme RU84_11625 531ad23e0c3260b878b66aba880e6e8d 426 Gene3D G3DSA:2.40.160.10 25 426 5.1E-151 T 18-10-2018 IPR023614 Porin domain superfamily RU84_11625 531ad23e0c3260b878b66aba880e6e8d 426 Pfam PF03573 outer membrane porin, OprD family 23 426 4.7E-105 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_00695 5f13b238c74ef7385261ed8ab1901a68 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 114 1.7E-27 T 18-10-2018 IPR006504 Transcriptional regulator Spx/MgsR RU84_00695 5f13b238c74ef7385261ed8ab1901a68 116 SUPERFAMILY SSF52833 1 113 7.18E-31 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_00695 5f13b238c74ef7385261ed8ab1901a68 116 Pfam PF03960 ArsC family 5 112 2.0E-15 T 18-10-2018 IPR006660 Arsenate reductase-like RU84_00695 5f13b238c74ef7385261ed8ab1901a68 116 Gene3D G3DSA:3.40.30.10 1 115 1.2E-39 T 18-10-2018 RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 SUPERFAMILY SSF55154 1 214 2.29E-36 T 18-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 Gene3D G3DSA:2.40.320.10 1 197 9.6E-34 T 18-10-2018 RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 Gene3D G3DSA:1.40.20.10 208 486 1.7E-47 T 18-10-2018 IPR038186 CHAD domain superfamily RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 Pfam PF05235 CHAD domain 231 445 4.0E-36 T 18-10-2018 IPR007899 CHAD domain RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 SMART SM00880 228 480 8.4E-57 T 18-10-2018 IPR007899 CHAD domain RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 Pfam PF01928 CYTH domain 1 194 4.4E-19 T 18-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RU84_05015 e3fb9f698729ce746a2f6959200eac7d 487 SMART SM01118 1 202 4.4E-32 T 18-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 RU84_08895 c424059b0c99c551f964a815fd575921 141 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 105 2.5E-17 T 18-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RU84_08895 c424059b0c99c551f964a815fd575921 141 SUPERFAMILY SSF51316 4 132 6.59E-35 T 18-10-2018 IPR011057 Mss4-like superfamily RU84_08895 c424059b0c99c551f964a815fd575921 141 Gene3D G3DSA:2.170.150.70 4 116 5.2E-15 T 18-10-2018 RU84_10735 6b80e1f306d5c9c5fb2c12f9722e5e2d 263 Gene3D G3DSA:1.10.12.10 206 263 1.8E-24 T 18-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal RU84_10735 6b80e1f306d5c9c5fb2c12f9722e5e2d 263 SUPERFAMILY SSF52096 1 263 1.42E-84 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10735 6b80e1f306d5c9c5fb2c12f9722e5e2d 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 262 2.8E-65 T 18-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 RU84_10735 6b80e1f306d5c9c5fb2c12f9722e5e2d 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 7 263 1.2E-118 T 18-10-2018 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 RU84_10735 6b80e1f306d5c9c5fb2c12f9722e5e2d 263 Gene3D G3DSA:3.90.226.10 1 205 4.3E-74 T 18-10-2018 RU84_15650 7939f1b8704ca27d91a255b7259d5c1f 411 Pfam PF11726 Inovirus Gp2 201 360 1.1E-11 T 18-10-2018 RU84_02725 5c46b96534c180c9438e18159e100494 117 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 29.578 T 18-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RU84_02725 5c46b96534c180c9438e18159e100494 117 Gene3D G3DSA:2.40.50.140 1 110 1.3E-39 T 18-10-2018 RU84_02725 5c46b96534c180c9438e18159e100494 117 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 113 9.5E-41 T 18-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RU84_02725 5c46b96534c180c9438e18159e100494 117 SUPERFAMILY SSF50249 2 115 6.85E-41 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_02725 5c46b96534c180c9438e18159e100494 117 PIRSF PIRSF002070 1 115 2.3E-32 T 18-10-2018 RU84_02725 5c46b96534c180c9438e18159e100494 117 Pfam PF00436 Single-strand binding protein family 4 106 3.2E-34 T 18-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RU84_06740 ecc3f84a1a36dab5d8002dc88ea78fc4 906 Pfam PF07244 Surface antigen variable number repeat 321 395 6.2E-5 T 18-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 RU84_06740 ecc3f84a1a36dab5d8002dc88ea78fc4 906 Gene3D G3DSA:2.40.160.50 575 906 7.5E-97 T 18-10-2018 RU84_06740 ecc3f84a1a36dab5d8002dc88ea78fc4 906 Pfam PF01103 Surface antigen 605 903 6.4E-35 T 18-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 RU84_06740 ecc3f84a1a36dab5d8002dc88ea78fc4 906 Gene3D G3DSA:3.10.20.310 313 400 1.1E-18 T 18-10-2018 RU84_06740 ecc3f84a1a36dab5d8002dc88ea78fc4 906 Pfam PF17243 POTRA domain TamA domain 1 243 311 5.6E-11 T 18-10-2018 IPR035243 TamA, POTRA domain 1 RU84_06740 ecc3f84a1a36dab5d8002dc88ea78fc4 906 Gene3D G3DSA:3.10.20.310 401 489 8.2E-6 T 18-10-2018 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 20 237 2.5E-63 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 Pfam PF00902 Sec-independent protein translocase protein (TatC) 23 232 1.6E-59 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 114 3.9E-38 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 114 140 3.9E-38 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 165 193 3.9E-38 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 19 46 3.9E-38 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_16030 6d5b2ddb25fafcfeb29daa1caea881ba 256 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 13 249 15.515 T 18-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 RU84_19305 2c72634ec14036aba304988575f8c257 101 SUPERFAMILY SSF48295 3 59 4.6E-10 T 18-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 RU84_09790 99406f0fe1612b931a2cd4cb56448f96 254 SUPERFAMILY SSF47616 134 207 3.62E-8 T 18-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily RU84_09790 99406f0fe1612b931a2cd4cb56448f96 254 Gene3D G3DSA:3.40.30.10 1 103 1.8E-15 T 18-10-2018 RU84_09790 99406f0fe1612b931a2cd4cb56448f96 254 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 8.2E-17 T 18-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 RU84_09790 99406f0fe1612b931a2cd4cb56448f96 254 Pfam PF14497 Glutathione S-transferase, C-terminal domain 138 204 8.7E-6 T 18-10-2018 IPR004046 Glutathione S-transferase, C-terminal RU84_09790 99406f0fe1612b931a2cd4cb56448f96 254 Gene3D G3DSA:1.20.1050.10 116 214 2.6E-7 T 18-10-2018 RU84_09790 99406f0fe1612b931a2cd4cb56448f96 254 SUPERFAMILY SSF52833 2 99 3.52E-19 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_03305 6598f8b8a38c4661044a17f07fc44135 709 Gene3D G3DSA:2.40.170.20 176 705 1.6E-91 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_03305 6598f8b8a38c4661044a17f07fc44135 709 Gene3D G3DSA:2.170.130.10 32 172 2.6E-19 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_03305 6598f8b8a38c4661044a17f07fc44135 709 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 160 6.6E-18 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_03305 6598f8b8a38c4661044a17f07fc44135 709 Pfam PF00593 TonB dependent receptor 236 705 2.1E-47 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_03305 6598f8b8a38c4661044a17f07fc44135 709 SUPERFAMILY SSF56935 32 705 2.07E-114 T 18-10-2018 RU84_01060 4e7a39ce531172f41f36f262e28bdfa3 295 SUPERFAMILY SSF103481 192 292 1.03E-14 T 18-10-2018 RU84_01060 4e7a39ce531172f41f36f262e28bdfa3 295 SUPERFAMILY SSF103481 45 152 1.83E-7 T 18-10-2018 RU84_01060 4e7a39ce531172f41f36f262e28bdfa3 295 Pfam PF00892 EamA-like transporter family 157 289 7.7E-15 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_01060 4e7a39ce531172f41f36f262e28bdfa3 295 Pfam PF00892 EamA-like transporter family 6 149 1.3E-11 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 Pfam PF00303 Thymidylate synthase 3 280 4.1E-118 T 18-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 3 280 1.6E-139 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 SUPERFAMILY SSF55831 1 280 9.81E-130 T 18-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 Gene3D G3DSA:3.30.572.10 1 280 3.2E-132 T 18-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 ProSitePatterns PS00091 Thymidylate synthase active site. 142 170 - T 18-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 PRINTS PR00108 Thymidylate synthase family signature 131 150 3.1E-47 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 PRINTS PR00108 Thymidylate synthase family signature 157 172 3.1E-47 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 PRINTS PR00108 Thymidylate synthase family signature 42 63 3.1E-47 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 PRINTS PR00108 Thymidylate synthase family signature 175 201 3.1E-47 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 PRINTS PR00108 Thymidylate synthase family signature 213 230 3.1E-47 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_16065 11b2a8e368cd6567e07ba056c19505ee 280 Hamap MF_00008 Thymidylate synthase [thyA]. 1 280 39.689 T 18-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 RU84_08750 3bfce718b8b75ed1f89eff9d05dba864 263 Pfam PF01925 Sulfite exporter TauE/SafE 8 253 3.5E-39 T 18-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RU84_03970 94982b1f32129c74213e221200bb9047 307 Pfam PF05661 Protein of unknown function (DUF808) 3 294 2.5E-117 T 18-10-2018 IPR008526 Inner membrane protein YedI RU84_03970 94982b1f32129c74213e221200bb9047 307 PIRSF PIRSF016660 1 306 6.2E-131 T 18-10-2018 IPR008526 Inner membrane protein YedI RU84_07755 9ec578da6c7706cefe720169d47511cb 107 SUPERFAMILY SSF50022 3 105 1.31E-23 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_07755 9ec578da6c7706cefe720169d47511cb 107 Pfam PF00355 Rieske [2Fe-2S] domain 4 88 7.6E-15 T 18-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 RU84_07755 9ec578da6c7706cefe720169d47511cb 107 Gene3D G3DSA:2.102.10.10 1 107 2.0E-18 T 18-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 RU84_12145 08c6b3b9a64b4caca0446740ef013985 547 SUPERFAMILY SSF47226 423 531 7.46E-5 T 18-10-2018 IPR036641 HPT domain superfamily GO:0000160 RU84_18730 6a5420a9c2a991dbc8144db583fcefc1 279 SUPERFAMILY SSF53474 1 274 3.59E-86 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_18730 6a5420a9c2a991dbc8144db583fcefc1 279 Pfam PF00756 Putative esterase 21 269 3.8E-67 T 18-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 RU84_18730 6a5420a9c2a991dbc8144db583fcefc1 279 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 273 2.4E-125 T 18-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 RU84_18730 6a5420a9c2a991dbc8144db583fcefc1 279 Gene3D G3DSA:3.40.50.1820 1 277 8.3E-96 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_03810 c2b8c1f3cf9cac0059bbdac40e529c66 325 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 99 - T 18-10-2018 IPR033749 Polyprenyl synthetase, conserved site RU84_03810 c2b8c1f3cf9cac0059bbdac40e529c66 325 Gene3D G3DSA:1.10.600.10 3 324 5.1E-108 T 18-10-2018 IPR008949 Isoprenoid synthase domain superfamily RU84_03810 c2b8c1f3cf9cac0059bbdac40e529c66 325 SUPERFAMILY SSF48576 6 323 2.4E-95 T 18-10-2018 IPR008949 Isoprenoid synthase domain superfamily RU84_03810 c2b8c1f3cf9cac0059bbdac40e529c66 325 Pfam PF00348 Polyprenyl synthetase 36 263 1.5E-72 T 18-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 RU84_03810 c2b8c1f3cf9cac0059bbdac40e529c66 325 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 206 218 - T 18-10-2018 IPR033749 Polyprenyl synthetase, conserved site RU84_14610 2c33849c052a88f88156fab01772ba0e 189 SUPERFAMILY SSF51283 3 188 6.54E-55 T 18-10-2018 IPR036157 dUTPase-like superfamily RU84_14610 2c33849c052a88f88156fab01772ba0e 189 Hamap MF_00146 dCTP deaminase [dcd]. 1 189 29.071 T 18-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RU84_14610 2c33849c052a88f88156fab01772ba0e 189 Pfam PF00692 dUTPase 72 184 3.8E-9 T 18-10-2018 IPR029054 dUTPase-like RU84_14610 2c33849c052a88f88156fab01772ba0e 189 Gene3D G3DSA:2.70.40.10 1 161 1.7E-55 T 18-10-2018 IPR036157 dUTPase-like superfamily RU84_14610 2c33849c052a88f88156fab01772ba0e 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 8.5E-52 T 18-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 RU84_16380 66ada3f36826830d20e5781f36336e04 384 Pfam PF06969 HemN C-terminal domain 312 372 1.9E-12 T 18-10-2018 IPR010723 HemN, C-terminal RU84_16380 66ada3f36826830d20e5781f36336e04 384 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 376 2.9E-115 T 18-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 RU84_16380 66ada3f36826830d20e5781f36336e04 384 SMART SM00729 10 230 3.8E-52 T 18-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 RU84_16380 66ada3f36826830d20e5781f36336e04 384 Gene3D G3DSA:3.80.30.20 2 311 1.6E-92 T 18-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe RU84_16380 66ada3f36826830d20e5781f36336e04 384 SUPERFAMILY SSF102114 10 384 1.7E-102 T 18-10-2018 RU84_16380 66ada3f36826830d20e5781f36336e04 384 Pfam PF04055 Radical SAM superfamily 15 185 9.7E-22 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_01210 fdaef5a38ae95ad9a7df1336f9e48fce 182 Pfam PF05656 Protein of unknown function (DUF805) 16 128 4.4E-21 T 18-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 RU84_15865 14c861013de04159965cedffc6dabd06 410 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 29 387 76.858 T 18-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RU84_15865 14c861013de04159965cedffc6dabd06 410 Gene3D G3DSA:3.20.20.70 91 372 1.4E-108 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_15865 14c861013de04159965cedffc6dabd06 410 Gene3D G3DSA:1.10.150.530 29 90 3.5E-26 T 18-10-2018 RU84_15865 14c861013de04159965cedffc6dabd06 410 SUPERFAMILY SSF102114 135 355 1.15E-16 T 18-10-2018 RU84_15865 14c861013de04159965cedffc6dabd06 410 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 28 392 2.1E-144 T 18-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 RU84_15865 14c861013de04159965cedffc6dabd06 410 Pfam PF04055 Radical SAM superfamily 139 312 3.9E-18 T 18-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 RU84_15865 14c861013de04159965cedffc6dabd06 410 PIRSF PIRSF006004 21 401 3.2E-148 T 18-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 RU84_05985 86b089e1f31d6d75713bb043b38b0858 195 Pfam PF02674 Colicin V production protein 4 142 2.4E-26 T 18-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 9.2E-30 T 18-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 18-10-2018 IPR006162 Phosphopantetheine attachment site RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 6.8E-16 T 18-10-2018 IPR009081 Phosphopantetheine binding ACP domain RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 SUPERFAMILY SSF47336 2 77 1.31E-22 T 18-10-2018 IPR036736 ACP-like superfamily RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 Gene3D G3DSA:1.10.1200.10 1 77 1.2E-25 T 18-10-2018 IPR036736 ACP-like superfamily RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 3.0E-14 T 18-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RU84_14440 46c6b674ae989f0d3640552aaf9543bf 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 20.511 T 18-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 RU84_18415 7d65c1a20020e525331b75ca22e41542 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.163 T 18-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_18415 7d65c1a20020e525331b75ca22e41542 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.1E-26 T 18-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_18415 7d65c1a20020e525331b75ca22e41542 44 Pfam PF00468 Ribosomal protein L34 1 44 1.8E-25 T 18-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_18415 7d65c1a20020e525331b75ca22e41542 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 18-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 RU84_18415 7d65c1a20020e525331b75ca22e41542 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 2.0E-14 T 18-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_12000 b8707477873fc4661a9581b47088b286 214 Pfam PF05656 Protein of unknown function (DUF805) 118 212 6.5E-30 T 18-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 RU84_11890 3aecf376d8ae8db9b53dd91ea9108a03 362 Pfam PF05987 Bacterial protein of unknown function (DUF898) 30 355 4.6E-82 T 18-10-2018 IPR010295 Protein of unknown function DUF898 RU84_00500 5e1a1ee2e4a0665ff2cb598196ed12ab 406 SUPERFAMILY SSF141130 50 400 1.19E-81 T 18-10-2018 RU84_00500 5e1a1ee2e4a0665ff2cb598196ed12ab 406 Gene3D G3DSA:3.10.28.20 322 402 4.9E-22 T 18-10-2018 RU84_00500 5e1a1ee2e4a0665ff2cb598196ed12ab 406 Pfam PF03069 Acetamidase/Formamidase family 242 386 5.8E-26 T 18-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 RU84_00500 5e1a1ee2e4a0665ff2cb598196ed12ab 406 Pfam PF03069 Acetamidase/Formamidase family 130 240 8.7E-9 T 18-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 RU84_00500 5e1a1ee2e4a0665ff2cb598196ed12ab 406 Gene3D G3DSA:2.60.120.580 47 214 1.4E-15 T 18-10-2018 RU84_00500 5e1a1ee2e4a0665ff2cb598196ed12ab 406 Gene3D G3DSA:2.60.120.580 216 313 3.4E-29 T 18-10-2018 RU84_08025 5c42604db16ae3294ba650d7e8f8d7e0 418 Gene3D G3DSA:2.40.160.10 28 418 1.4E-140 T 18-10-2018 IPR023614 Porin domain superfamily RU84_08025 5c42604db16ae3294ba650d7e8f8d7e0 418 Pfam PF03573 outer membrane porin, OprD family 36 417 1.8E-73 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_08330 3b0b1c790303de14f8290362c9cedd04 270 SUPERFAMILY SSF51556 2 267 1.54E-61 T 18-10-2018 IPR032466 Metal-dependent hydrolase RU84_08330 3b0b1c790303de14f8290362c9cedd04 270 Gene3D G3DSA:3.20.20.140 1 270 2.2E-72 T 18-10-2018 RU84_08330 3b0b1c790303de14f8290362c9cedd04 270 Pfam PF04909 Amidohydrolase 4 267 2.2E-25 T 18-10-2018 IPR006680 Amidohydrolase-related GO:0016787 RU84_13900 792b9ed2391ecf8017a516a9b42df597 150 PIRSF PIRSF004638 1 150 2.2E-50 T 18-10-2018 IPR005265 Uncharacterised protein family UPF0093 RU84_13900 792b9ed2391ecf8017a516a9b42df597 150 Pfam PF03653 Uncharacterised protein family (UPF0093) 6 148 8.0E-50 T 18-10-2018 IPR005265 Uncharacterised protein family UPF0093 RU84_13900 792b9ed2391ecf8017a516a9b42df597 150 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 7 148 6.3E-42 T 18-10-2018 IPR005265 Uncharacterised protein family UPF0093 RU84_04810 97e0fa9a6c6d5b235848408fb25ceb58 409 Gene3D G3DSA:3.40.640.10 64 286 9.9E-135 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_04810 97e0fa9a6c6d5b235848408fb25ceb58 409 SUPERFAMILY SSF53383 4 392 9.11E-118 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_04810 97e0fa9a6c6d5b235848408fb25ceb58 409 Gene3D G3DSA:3.90.1150.10 27 387 9.9E-135 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_04810 97e0fa9a6c6d5b235848408fb25ceb58 409 Pfam PF00155 Aminotransferase class I and II 32 385 1.5E-73 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_04810 97e0fa9a6c6d5b235848408fb25ceb58 409 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 18-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 RU84_14325 afb8bac22ea7a7f683d6b345ffe85dca 183 Pfam PF03358 NADPH-dependent FMN reductase 50 121 2.1E-13 T 18-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 RU84_14325 afb8bac22ea7a7f683d6b345ffe85dca 183 Gene3D G3DSA:3.40.50.360 4 183 8.8E-50 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_14325 afb8bac22ea7a7f683d6b345ffe85dca 183 SUPERFAMILY SSF52218 7 182 3.67E-46 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_14325 afb8bac22ea7a7f683d6b345ffe85dca 183 ProSitePatterns PS00201 Flavodoxin signature. 10 26 - T 18-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 RU84_01450 ecad702439ad84997bef661ea8f6de90 175 Pfam PF04351 Pilus assembly protein, PilP 27 170 3.8E-43 T 18-10-2018 IPR007446 Pilus assembly protein PilP RU84_01450 ecad702439ad84997bef661ea8f6de90 175 PIRSF PIRSF016481 1 172 1.0E-36 T 18-10-2018 IPR007446 Pilus assembly protein PilP RU84_01450 ecad702439ad84997bef661ea8f6de90 175 Gene3D G3DSA:2.30.30.830 77 171 3.4E-29 T 18-10-2018 RU84_12675 2d79768bf5aeb878192770f3f4687c93 221 Hamap MF_01385 Urease accessory protein UreF [ureF]. 8 221 26.32 T 18-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RU84_12675 2d79768bf5aeb878192770f3f4687c93 221 PIRSF PIRSF009467 5 221 1.2E-55 T 18-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RU84_12675 2d79768bf5aeb878192770f3f4687c93 221 Pfam PF01730 UreF 40 179 1.3E-27 T 18-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 RU84_12675 2d79768bf5aeb878192770f3f4687c93 221 Gene3D G3DSA:1.10.4190.10 3 200 5.6E-44 T 18-10-2018 IPR038277 UreF domain superfamily RU84_18575 874405e68efbaa33af3a81d4c84e4695 200 Gene3D G3DSA:3.30.420.10 3 180 3.1E-18 T 18-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 RU84_18575 874405e68efbaa33af3a81d4c84e4695 200 SUPERFAMILY SSF53098 6 143 1.74E-7 T 18-10-2018 IPR012337 Ribonuclease H-like superfamily RU84_06850 e86d6e5955406a055cd8e7b5f27c41ba 239 Pfam PF00149 Calcineurin-like phosphoesterase 3 197 7.4E-5 T 18-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 RU84_06850 e86d6e5955406a055cd8e7b5f27c41ba 239 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 226 2.1E-70 T 18-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 RU84_06850 e86d6e5955406a055cd8e7b5f27c41ba 239 SUPERFAMILY SSF56300 2 226 1.07E-24 T 18-10-2018 RU84_06850 e86d6e5955406a055cd8e7b5f27c41ba 239 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 239 90.494 T 18-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 PRINTS PR01650 Bacterial translocase SecE signature 87 107 8.9E-15 T 18-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 PRINTS PR01650 Bacterial translocase SecE signature 131 146 8.9E-15 T 18-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 PRINTS PR01650 Bacterial translocase SecE signature 111 131 8.9E-15 T 18-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 PRINTS PR01650 Bacterial translocase SecE signature 66 87 8.9E-15 T 18-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 94 144 5.6E-17 T 18-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 Hamap MF_00422 Protein translocase subunit SecE [secE]. 88 143 12.785 T 18-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 91 145 6.7E-19 T 18-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 Gene3D G3DSA:1.20.5.1030 88 144 9.5E-16 T 18-10-2018 IPR038379 SecE superfamily RU84_16990 d89b9689e9aa9bc51e9bac912fa2fca5 146 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 93 121 - T 18-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 RU84_00545 903c960d8155ba8b4b54a686114bc746 384 Gene3D G3DSA:3.90.1150.10 17 380 2.1E-129 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_00545 903c960d8155ba8b4b54a686114bc746 384 Gene3D G3DSA:3.40.640.10 41 280 2.1E-129 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_00545 903c960d8155ba8b4b54a686114bc746 384 Pfam PF00155 Aminotransferase class I and II 29 377 7.8E-62 T 18-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 RU84_00545 903c960d8155ba8b4b54a686114bc746 384 SUPERFAMILY SSF53383 5 383 2.15E-97 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_01695 ebcb88d481cce55d7fdfef1b9d20bc6e 214 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 159 2.9E-17 T 18-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RU84_01695 ebcb88d481cce55d7fdfef1b9d20bc6e 214 PIRSF PIRSF009320 1 208 1.3E-29 T 18-10-2018 RU84_01695 ebcb88d481cce55d7fdfef1b9d20bc6e 214 SUPERFAMILY SSF52540 1 205 5.9E-34 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_01695 ebcb88d481cce55d7fdfef1b9d20bc6e 214 Gene3D G3DSA:3.40.50.300 1 208 1.1E-42 T 18-10-2018 RU84_09765 3e5f2b43f68e02856a09a2248fd45003 443 SUPERFAMILY SSF56935 92 443 4.03E-24 T 18-10-2018 RU84_04515 897728edeae2efb4fc7b2f4a53cf1858 129 Pfam PF11304 Protein of unknown function (DUF3106) 39 89 1.3E-7 T 18-10-2018 IPR021455 Protein of unknown function DUF3106 RU84_09130 7dacdad146d1687aaf2ee63ee2ee032f 151 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 23 137 2.8E-31 T 18-10-2018 IPR008769 Poly granule associated RU84_05860 b6e5762d44d847607d3035e48ef32586 452 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 310 333 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_05860 b6e5762d44d847607d3035e48ef32586 452 Pfam PF00375 Sodium:dicarboxylate symporter family 10 416 3.0E-110 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 2.7E-27 T 18-10-2018 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 PRINTS PR00173 Glutamate-aspartate symporter signature 89 114 2.7E-27 T 18-10-2018 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 PRINTS PR00173 Glutamate-aspartate symporter signature 207 226 2.7E-27 T 18-10-2018 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 PRINTS PR00173 Glutamate-aspartate symporter signature 307 333 2.7E-27 T 18-10-2018 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 PRINTS PR00173 Glutamate-aspartate symporter signature 160 182 2.7E-27 T 18-10-2018 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 PRINTS PR00173 Glutamate-aspartate symporter signature 342 361 2.7E-27 T 18-10-2018 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 Gene3D G3DSA:1.10.3860.10 1 434 1.1E-122 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 3 443 37.618 T 18-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 RU84_05860 b6e5762d44d847607d3035e48ef32586 452 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 51 66 - T 18-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site RU84_05860 b6e5762d44d847607d3035e48ef32586 452 SUPERFAMILY SSF118215 10 416 7.06E-120 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 13 393 53.646 T 18-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 SUPERFAMILY SSF53383 29 393 1.3E-120 T 18-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 Gene3D G3DSA:3.90.1150.10 261 395 9.6E-52 T 18-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 Gene3D G3DSA:3.40.640.10 6 258 1.4E-88 T 18-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 392 1.2E-139 T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 PIRSF PIRSF001434 1 395 2.3E-133 T 18-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 RU84_08865 e63f34ecc1b13b04e5de40644c07250f 395 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 12 392 1.0E-176 T 18-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 RU84_06675 901f83bcd9fa22296a3ee994efc19b92 258 Gene3D G3DSA:3.40.50.720 12 258 1.6E-82 T 18-10-2018 RU84_06675 901f83bcd9fa22296a3ee994efc19b92 258 SUPERFAMILY SSF69572 8 256 4.19E-84 T 18-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 RU84_06675 901f83bcd9fa22296a3ee994efc19b92 258 Pfam PF00899 ThiF family 20 252 2.8E-66 T 18-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 RU84_06165 11e67d577d072c585533e3fb59808745 120 Gene3D G3DSA:2.40.50.200 16 120 1.4E-26 T 18-10-2018 IPR036700 Bacterial OB-fold superfamily RU84_06165 11e67d577d072c585533e3fb59808745 120 Pfam PF04076 Bacterial OB fold (BOF) protein 31 117 1.4E-23 T 18-10-2018 IPR005220 Bacterial OB-fold RU84_06165 11e67d577d072c585533e3fb59808745 120 SUPERFAMILY SSF101756 31 118 8.89E-25 T 18-10-2018 IPR036700 Bacterial OB-fold superfamily RU84_04465 c639bad14f1c346502b8bd605125700b 338 Gene3D G3DSA:3.40.1750.20 186 252 8.5E-64 T 18-10-2018 RU84_04465 c639bad14f1c346502b8bd605125700b 338 SUPERFAMILY SSF52096 75 280 1.43E-40 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_04465 c639bad14f1c346502b8bd605125700b 338 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 81 292 8.5E-48 T 18-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 RU84_04465 c639bad14f1c346502b8bd605125700b 338 Gene3D G3DSA:3.90.226.10 82 289 8.5E-64 T 18-10-2018 RU84_04465 c639bad14f1c346502b8bd605125700b 338 Pfam PF01343 Peptidase family S49 148 297 1.7E-37 T 18-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 RU84_15515 ec5b479d163537db19b797e2b2b704e3 157 SUPERFAMILY SSF52788 1 135 7.46E-37 T 18-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily RU84_15515 ec5b479d163537db19b797e2b2b704e3 157 Gene3D G3DSA:3.40.50.2300 1 137 3.8E-37 T 18-10-2018 RU84_15515 ec5b479d163537db19b797e2b2b704e3 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 1.5E-23 T 18-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RU84_15515 ec5b479d163537db19b797e2b2b704e3 157 SMART SM00226 1 136 1.5E-34 T 18-10-2018 IPR023485 Phosphotyrosine protein phosphatase I RU84_08160 ba9857e1139fd51cccb29ecdbf3f504d 434 SUPERFAMILY SSF103473 9 422 4.19E-84 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_08160 ba9857e1139fd51cccb29ecdbf3f504d 434 Pfam PF07690 Major Facilitator Superfamily 20 382 7.8E-46 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_08160 ba9857e1139fd51cccb29ecdbf3f504d 434 Gene3D G3DSA:1.20.1250.20 2 430 3.6E-77 T 18-10-2018 RU84_04890 afde2144a7fddf70a5ce047ddc2a7f88 233 Pfam PF01988 VIT family 18 225 2.5E-54 T 18-10-2018 IPR008217 Ccc1 family RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 18-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 Gene3D G3DSA:3.40.50.300 1 217 9.4E-81 T 18-10-2018 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 Hamap MF_00235 Adenylate kinase [adk]. 1 216 51.096 T 18-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 SUPERFAMILY SSF52540 1 216 8.44E-48 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 Pfam PF00406 Adenylate kinase 5 185 1.0E-54 T 18-10-2018 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 1.1E-73 T 18-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.3E-16 T 18-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 PRINTS PR00094 Adenylate kinase signature 32 46 3.4E-32 T 18-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 PRINTS PR00094 Adenylate kinase signature 81 97 3.4E-32 T 18-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 PRINTS PR00094 Adenylate kinase signature 4 17 3.4E-32 T 18-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 PRINTS PR00094 Adenylate kinase signature 173 187 3.4E-32 T 18-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_12640 9941adc3ed2cbf6dc5bbe13d353ff4f1 217 PRINTS PR00094 Adenylate kinase signature 156 171 3.4E-32 T 18-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 RU84_19055 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 Gene3D G3DSA:3.20.20.70 2 212 9.6E-64 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_19055 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 SUPERFAMILY SSF51366 4 209 3.92E-56 T 18-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 RU84_19055 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 212 37.199 T 18-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RU84_19055 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 205 2.3E-44 T 18-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 Pfam PF07729 FCD domain 75 210 1.9E-12 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 SMART SM00345 7 65 4.6E-9 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 SUPERFAMILY SSF46785 4 69 7.32E-15 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 Gene3D G3DSA:1.20.120.530 73 215 7.3E-19 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 SUPERFAMILY SSF48008 73 211 2.12E-15 T 18-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 SMART SM00895 75 213 5.4E-19 T 18-10-2018 IPR011711 GntR, C-terminal RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 65 5.6E-11 T 18-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 RU84_11660 679edc4fbdf1681045d80437dc34e7d0 226 Gene3D G3DSA:1.10.10.10 1 66 4.7E-16 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01330 3b6103cf3f4270c4cae1d49e7116a83d 318 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 19 291 2.8E-88 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_01330 3b6103cf3f4270c4cae1d49e7116a83d 318 SUPERFAMILY SSF161111 19 214 3.01E-59 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_01330 3b6103cf3f4270c4cae1d49e7116a83d 318 Gene3D G3DSA:1.20.1510.10 19 213 2.7E-48 T 18-10-2018 IPR027469 Cation efflux transmembrane domain superfamily RU84_01330 3b6103cf3f4270c4cae1d49e7116a83d 318 SUPERFAMILY SSF160240 218 289 2.75E-5 T 18-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 RU84_01330 3b6103cf3f4270c4cae1d49e7116a83d 318 Pfam PF01545 Cation efflux family 22 213 5.5E-49 T 18-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 RU84_19365 393ab0a7dfae518f0223f2098b87eeb6 170 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 51 157 3.8E-9 T 18-10-2018 IPR018958 Knr4/Smi1-like domain RU84_19365 393ab0a7dfae518f0223f2098b87eeb6 170 Gene3D G3DSA:3.40.1580.10 48 169 1.7E-9 T 18-10-2018 IPR037883 Knr4/Smi1-like domain superfamily RU84_19365 393ab0a7dfae518f0223f2098b87eeb6 170 SUPERFAMILY SSF160631 49 169 6.41E-8 T 18-10-2018 RU84_04660 1c7dc15766db9d67a51e59488d25440d 249 Gene3D G3DSA:2.40.160.170 22 249 2.0E-86 T 18-10-2018 RU84_04660 1c7dc15766db9d67a51e59488d25440d 249 SUPERFAMILY SSF56925 47 202 4.97E-8 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_13740 5ac258eb3b207d93232703e15c895653 132 Pfam PF04355 SmpA / OmlA family 30 106 1.9E-23 T 18-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 RU84_13740 5ac258eb3b207d93232703e15c895653 132 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 117 31.643 T 18-10-2018 IPR026592 Outer membrane protein assembly factor BamE RU84_13740 5ac258eb3b207d93232703e15c895653 132 Gene3D G3DSA:3.30.1450.10 29 117 3.9E-23 T 18-10-2018 IPR037873 BamE-like RU84_02525 3280b310a1ef12da33b9b96433aeb908 269 SMART SM00563 83 194 5.4E-16 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_02525 3280b310a1ef12da33b9b96433aeb908 269 SUPERFAMILY SSF69593 30 266 1.44E-22 T 18-10-2018 RU84_02525 3280b310a1ef12da33b9b96433aeb908 269 Pfam PF01553 Acyltransferase 72 186 3.8E-16 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_00045 74eb935cfd63c9a9f88996f940a39d79 335 Gene3D G3DSA:3.40.190.170 53 246 8.4E-10 T 18-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily RU84_00045 74eb935cfd63c9a9f88996f940a39d79 335 SUPERFAMILY SSF53850 126 220 5.84E-5 T 18-10-2018 RU84_09270 27911624522dd0e2d233b4dd5e34dede 904 SUPERFAMILY SSF56935 55 904 5.8E-105 T 18-10-2018 RU84_09270 27911624522dd0e2d233b4dd5e34dede 904 Pfam PF00593 TonB dependent receptor 357 903 1.6E-51 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_09270 27911624522dd0e2d233b4dd5e34dede 904 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 180 2.6E-21 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_09270 27911624522dd0e2d233b4dd5e34dede 904 Gene3D G3DSA:2.170.130.10 48 185 1.6E-32 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_11695 38b9dcd0e158da1f8b5b8e87fca3014c 416 Pfam PF03573 outer membrane porin, OprD family 20 415 3.7E-131 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_11695 38b9dcd0e158da1f8b5b8e87fca3014c 416 Gene3D G3DSA:2.40.160.10 12 416 1.9E-167 T 18-10-2018 IPR023614 Porin domain superfamily RU84_05975 b1cb22b853f52f338ebbf4af6e357dbc 159 SUPERFAMILY SSF103054 92 158 3.27E-6 T 18-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily RU84_05975 b1cb22b853f52f338ebbf4af6e357dbc 159 Pfam PF04612 Type II secretion system (T2SS), protein M 16 158 5.8E-14 T 18-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 RU84_08470 9913cec9a6809b4030e03b05339d37b2 497 Gene3D G3DSA:3.20.20.70 154 420 7.0E-95 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_08470 9913cec9a6809b4030e03b05339d37b2 497 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 189 479 3.5E-43 T 18-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 RU84_08470 9913cec9a6809b4030e03b05339d37b2 497 PIRSF PIRSF005943 1 497 1.9E-176 T 18-10-2018 IPR016471 Nicotinamide phosphoribosyl transferase Reactome: R-HSA-1368108|Reactome: R-HSA-197264 RU84_08470 9913cec9a6809b4030e03b05339d37b2 497 SUPERFAMILY SSF51690 189 494 5.18E-36 T 18-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 RU84_17115 ab8aca4535981326968aa8aa94e76b36 301 Pfam PF00892 EamA-like transporter family 12 144 2.2E-11 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_17115 ab8aca4535981326968aa8aa94e76b36 301 Pfam PF00892 EamA-like transporter family 162 296 7.8E-17 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_17115 ab8aca4535981326968aa8aa94e76b36 301 SUPERFAMILY SSF103481 64 148 1.96E-5 T 18-10-2018 RU84_17115 ab8aca4535981326968aa8aa94e76b36 301 SUPERFAMILY SSF103481 202 299 6.15E-12 T 18-10-2018 RU84_15915 48ebb2ae1b932746d24f477f36913119 542 SUPERFAMILY SSF53720 34 508 3.14E-102 T 18-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 RU84_15915 48ebb2ae1b932746d24f477f36913119 542 Gene3D G3DSA:3.40.309.10 290 481 3.6E-102 T 18-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 RU84_15915 48ebb2ae1b932746d24f477f36913119 542 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 314 325 - T 18-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 RU84_15915 48ebb2ae1b932746d24f477f36913119 542 Pfam PF00171 Aldehyde dehydrogenase family 63 507 9.3E-97 T 18-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 RU84_15915 48ebb2ae1b932746d24f477f36913119 542 Gene3D G3DSA:3.40.605.10 66 502 3.6E-102 T 18-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 RU84_11745 7e8748a3e50d43c67a7637b2054f4bfa 298 Pfam PF00892 EamA-like transporter family 160 284 2.5E-14 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_11745 7e8748a3e50d43c67a7637b2054f4bfa 298 Pfam PF00892 EamA-like transporter family 17 146 6.1E-18 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_11745 7e8748a3e50d43c67a7637b2054f4bfa 298 SUPERFAMILY SSF103481 190 285 2.48E-14 T 18-10-2018 RU84_11745 7e8748a3e50d43c67a7637b2054f4bfa 298 SUPERFAMILY SSF103481 50 150 2.22E-16 T 18-10-2018 RU84_00570 ad311e7abfdba30525fdb754c650e3a7 171 SUPERFAMILY SSF158442 11 159 1.29E-41 T 18-10-2018 IPR023380 DsbB-like superfamily RU84_00570 ad311e7abfdba30525fdb754c650e3a7 171 Gene3D G3DSA:1.20.1550.10 3 170 6.0E-49 T 18-10-2018 IPR023380 DsbB-like superfamily RU84_00570 ad311e7abfdba30525fdb754c650e3a7 171 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 1 165 22.864 T 18-10-2018 IPR022920 Disulphide bond formation protein DsbB RU84_00570 ad311e7abfdba30525fdb754c650e3a7 171 Pfam PF02600 Disulfide bond formation protein DsbB 6 157 8.2E-41 T 18-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 RU84_09050 ca96c99812fdc50bd21f17d43420c618 205 Gene3D G3DSA:3.50.30.100 2 189 1.6E-38 T 18-10-2018 RU84_09050 ca96c99812fdc50bd21f17d43420c618 205 Pfam PF03737 Aldolase/RraA 33 166 1.6E-26 T 18-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein RU84_09050 ca96c99812fdc50bd21f17d43420c618 205 SUPERFAMILY SSF89562 16 178 5.1E-33 T 18-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily RU84_13475 148fa348c02103bd36bc92766417a82c 747 Gene3D G3DSA:1.10.530.10 474 618 1.7E-16 T 18-10-2018 RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 ProSitePatterns PS00213 Lipocalin signature. 47 58 - T 18-10-2018 IPR022272 Lipocalin family conserved site RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 SUPERFAMILY SSF50814 38 193 1.5E-41 T 18-10-2018 IPR012674 Calycin RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 PRINTS PR01171 Bacterial lipocalin signature 155 166 2.1E-9 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 PRINTS PR01171 Bacterial lipocalin signature 182 192 2.1E-9 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 PRINTS PR01171 Bacterial lipocalin signature 46 60 2.1E-9 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 PRINTS PR01171 Bacterial lipocalin signature 83 92 2.1E-9 T 18-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 Pfam PF08212 Lipocalin-like domain 46 192 3.0E-46 T 18-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 PIRSF PIRSF036893 7 195 6.8E-58 T 18-10-2018 IPR022271 Lipocalin, ApoD type RU84_04835 4dab65d125f1a50a09afeac6df1384be 195 Gene3D G3DSA:2.40.128.20 27 194 5.5E-49 T 18-10-2018 IPR012674 Calycin RU84_01945 6c33e20fc6356f974e85badfbe9eea64 271 SUPERFAMILY SSF51735 7 230 9.6E-23 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_01945 6c33e20fc6356f974e85badfbe9eea64 271 Pfam PF13460 NAD(P)H-binding 9 190 6.9E-8 T 18-10-2018 IPR016040 NAD(P)-binding domain RU84_01945 6c33e20fc6356f974e85badfbe9eea64 271 Gene3D G3DSA:3.40.50.720 1 269 1.5E-52 T 18-10-2018 RU84_07725 d9b71a50268cf6ce166d1de0ab6d3b83 98 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 19 95 8.2E-24 T 18-10-2018 IPR011846 Cyd operon protein YbgE RU84_15465 e57be9e857098e95b7bfee2458ac8a25 135 Gene3D G3DSA:3.30.1330.40 7 135 2.2E-23 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_15465 e57be9e857098e95b7bfee2458ac8a25 135 Pfam PF01042 Endoribonuclease L-PSP 20 134 1.7E-17 T 18-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 RU84_15465 e57be9e857098e95b7bfee2458ac8a25 135 SUPERFAMILY SSF55298 5 134 7.4E-24 T 18-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 RU84_18070 981a1822f9718721e35904a90068def7 189 SUPERFAMILY SSF55846 10 185 4.32E-63 T 18-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RU84_18070 981a1822f9718721e35904a90068def7 189 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 32 173 5.7E-26 T 18-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RU84_18070 981a1822f9718721e35904a90068def7 189 SMART SM00644 22 172 2.0E-41 T 18-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RU84_18070 981a1822f9718721e35904a90068def7 189 Gene3D G3DSA:3.40.80.10 9 189 1.7E-57 T 18-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 RU84_07005 2c0f44d792312be0ada287aca32a5385 411 SUPERFAMILY SSF50182 186 252 4.25E-12 T 18-10-2018 IPR010920 LSM domain superfamily RU84_07005 2c0f44d792312be0ada287aca32a5385 411 Pfam PF00924 Mechanosensitive ion channel 142 395 1.9E-49 T 18-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 RU84_09210 3a39257d1bc76f9e99dec276e1e68795 221 SUPERFAMILY SSF51735 2 207 8.06E-36 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_09210 3a39257d1bc76f9e99dec276e1e68795 221 Gene3D G3DSA:3.40.50.720 1 220 2.7E-49 T 18-10-2018 RU84_09210 3a39257d1bc76f9e99dec276e1e68795 221 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 8 80 5.0E-7 T 18-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 RU84_03595 dfebbf038eab35885d6536df9cf5bdef 461 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 448 3.4E-156 T 18-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RU84_03595 dfebbf038eab35885d6536df9cf5bdef 461 Pfam PF06974 Protein of unknown function (DUF1298) 302 445 1.9E-41 T 18-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RU84_03595 dfebbf038eab35885d6536df9cf5bdef 461 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 263 8.1E-68 T 18-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 RU84_06875 4500771d8a7d31cc088be40709f99f70 461 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 442 2.3E-218 T 18-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 RU84_06875 4500771d8a7d31cc088be40709f99f70 461 Gene3D G3DSA:3.20.20.70 142 450 1.7E-146 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_06875 4500771d8a7d31cc088be40709f99f70 461 Gene3D G3DSA:2.30.170.30 1 54 2.5E-22 T 18-10-2018 RU84_06875 4500771d8a7d31cc088be40709f99f70 461 PIRSF PIRSF018788 1 459 1.0E-232 T 18-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 RU84_06875 4500771d8a7d31cc088be40709f99f70 461 Gene3D G3DSA:1.10.220.70 55 141 2.6E-34 T 18-10-2018 RU84_06275 816afb431e8ea6f205f4ccd21727fa02 300 SUPERFAMILY SSF103481 191 288 4.18E-17 T 18-10-2018 RU84_06275 816afb431e8ea6f205f4ccd21727fa02 300 Pfam PF00892 EamA-like transporter family 12 142 2.0E-15 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_06275 816afb431e8ea6f205f4ccd21727fa02 300 Pfam PF00892 EamA-like transporter family 156 284 3.4E-21 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_06275 816afb431e8ea6f205f4ccd21727fa02 300 SUPERFAMILY SSF103481 42 143 7.98E-14 T 18-10-2018 RU84_08115 ffdbc205ebfc0dc883c15c8fd1a5117b 216 SUPERFAMILY SSF100950 8 212 1.59E-64 T 18-10-2018 IPR037171 NagB/RpiA transferase-like RU84_08115 ffdbc205ebfc0dc883c15c8fd1a5117b 216 SMART SM00882 9 206 2.4E-65 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_08115 ffdbc205ebfc0dc883c15c8fd1a5117b 216 Gene3D G3DSA:3.40.1080.10 4 215 7.4E-86 T 18-10-2018 RU84_08115 ffdbc205ebfc0dc883c15c8fd1a5117b 216 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 7 212 2.4E-89 T 18-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 RU84_08115 ffdbc205ebfc0dc883c15c8fd1a5117b 216 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 47 55 - T 18-10-2018 IPR004164 Coenzyme A transferase active site GO:0008410 Reactome: R-HSA-77108 RU84_08115 ffdbc205ebfc0dc883c15c8fd1a5117b 216 Pfam PF01144 Coenzyme A transferase 9 204 3.0E-38 T 18-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 RU84_13170 4aa31600caf48e9c92ed26d10c03796d 448 Pfam PF03573 outer membrane porin, OprD family 29 447 5.2E-24 T 18-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 RU84_13170 4aa31600caf48e9c92ed26d10c03796d 448 Gene3D G3DSA:2.40.160.10 27 448 1.0E-47 T 18-10-2018 IPR023614 Porin domain superfamily RU84_13950 f7efff99cd411105fac439b95134bba5 548 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 500 1.1E-109 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_13950 f7efff99cd411105fac439b95134bba5 548 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 501 7.3E-133 T 18-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 RU84_07780 aad1a6170c69f241485e01310837d680 445 Pfam PF02386 Cation transport protein 40 428 2.4E-56 T 18-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 RU84_07780 aad1a6170c69f241485e01310837d680 445 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 33 417 5.5E-100 T 18-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 RU84_12030 04a75e79dfededad465d79255ae19ab2 292 Pfam PF11726 Inovirus Gp2 122 290 9.9E-19 T 18-10-2018 RU84_09520 3af5cbbbcc1a8108e6b5c129250d7d2a 178 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 178 1.1E-53 T 18-10-2018 IPR018636 Protein of unknown function DUF2058 RU84_15825 9e0cce1301cbba9e224b1bbaf5f5ed91 218 Gene3D G3DSA:3.90.470.20 43 95 1.4E-29 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_15825 9e0cce1301cbba9e224b1bbaf5f5ed91 218 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 96 176 3.3E-14 T 18-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_15825 9e0cce1301cbba9e224b1bbaf5f5ed91 218 Gene3D G3DSA:3.90.470.20 96 186 1.4E-29 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_15825 9e0cce1301cbba9e224b1bbaf5f5ed91 218 SUPERFAMILY SSF56214 95 204 9.42E-21 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_15825 9e0cce1301cbba9e224b1bbaf5f5ed91 218 SUPERFAMILY SSF56214 33 86 5.76E-11 T 18-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 RU84_09960 85127e4899b41e3cc37acebdb94322ed 186 Pfam PF02417 Chromate transporter 18 174 1.4E-30 T 18-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 RU84_04070 61e24c88d4c4fd5c1b7e09633bfe3db7 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 25 40 - T 18-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_04070 61e24c88d4c4fd5c1b7e09633bfe3db7 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 59 72 - T 18-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_04070 61e24c88d4c4fd5c1b7e09633bfe3db7 283 Gene3D G3DSA:3.20.20.20 3 283 1.2E-110 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_04070 61e24c88d4c4fd5c1b7e09633bfe3db7 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 25 280 9.6E-96 T 18-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 RU84_04070 61e24c88d4c4fd5c1b7e09633bfe3db7 283 Pfam PF00809 Pterin binding enzyme 26 265 5.8E-81 T 18-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_04070 61e24c88d4c4fd5c1b7e09633bfe3db7 283 SUPERFAMILY SSF51717 11 282 2.49E-98 T 18-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 RU84_09060 0b63c36d48139fce6b70d931d097c039 636 Pfam PF04183 IucA / IucC family 171 421 2.4E-47 T 18-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 RU84_09060 0b63c36d48139fce6b70d931d097c039 636 Gene3D G3DSA:1.10.510.40 451 626 4.1E-8 T 18-10-2018 RU84_09060 0b63c36d48139fce6b70d931d097c039 636 Pfam PF06276 Ferric iron reductase FhuF-like transporter 465 611 1.2E-14 T 18-10-2018 IPR022770 Ferric iron reductase FhuF domain RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 507 4.3E-158 T 18-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 143 162 3.7E-34 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 178 202 3.7E-34 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 395 421 3.7E-34 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 343 362 3.7E-34 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 255 279 3.7E-34 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_14730 6ec9fcb98bbba3db9739c136339ddfb2 532 Pfam PF00361 Proton-conducting membrane transporter 137 437 4.1E-66 T 18-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_18495 3e30d815e71dd03bd0222bdfd0afc1f6 414 Gene3D G3DSA:3.40.50.300 156 334 2.5E-24 T 18-10-2018 RU84_18495 3e30d815e71dd03bd0222bdfd0afc1f6 414 SUPERFAMILY SSF52540 142 377 5.71E-23 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18495 3e30d815e71dd03bd0222bdfd0afc1f6 414 Pfam PF07728 AAA domain (dynein-related subfamily) 177 295 2.4E-17 T 18-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 RU84_18495 3e30d815e71dd03bd0222bdfd0afc1f6 414 Pfam PF08406 CbbQ/NirQ/NorQ C-terminal 329 409 2.2E-6 T 18-10-2018 IPR013615 CbbQ/NirQ/NorQ, C-terminal RU84_09310 9c0f61c1a5b5b88322a8378181caed7b 502 SUPERFAMILY SSF51905 11 482 1.08E-52 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09310 9c0f61c1a5b5b88322a8378181caed7b 502 SUPERFAMILY SSF51905 276 475 1.01E-21 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09310 9c0f61c1a5b5b88322a8378181caed7b 502 Pfam PF00743 Flavin-binding monooxygenase-like 12 347 2.0E-21 T 18-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 RU84_09310 9c0f61c1a5b5b88322a8378181caed7b 502 Gene3D G3DSA:3.50.50.60 304 500 1.4E-38 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_09310 9c0f61c1a5b5b88322a8378181caed7b 502 Gene3D G3DSA:3.50.50.60 1 209 2.7E-54 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_11315 8926a8ce5aea9061baa94251d7eb99c7 166 Pfam PF00866 Ring hydroxylating beta subunit 18 158 1.9E-49 T 18-10-2018 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0006725|GO:0055114 RU84_11315 8926a8ce5aea9061baa94251d7eb99c7 166 Gene3D G3DSA:3.10.450.50 4 166 1.4E-48 T 18-10-2018 RU84_11315 8926a8ce5aea9061baa94251d7eb99c7 166 SUPERFAMILY SSF54427 6 166 1.85E-56 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_11315 8926a8ce5aea9061baa94251d7eb99c7 166 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 12 166 1.3E-92 T 18-10-2018 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0055114 RU84_01075 354f5a2982ca1e57ea6a3b299c6d4237 333 SUPERFAMILY SSF51430 1 317 1.96E-101 T 18-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RU84_01075 354f5a2982ca1e57ea6a3b299c6d4237 333 Pfam PF00248 Aldo/keto reductase family 16 313 6.6E-76 T 18-10-2018 IPR023210 NADP-dependent oxidoreductase domain RU84_01075 354f5a2982ca1e57ea6a3b299c6d4237 333 Gene3D G3DSA:3.20.20.100 1 332 1.4E-117 T 18-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily RU84_06725 3cbba12a793b131073dc69f5796e5255 182 Pfam PF10973 Protein of unknown function (DUF2799) 28 110 1.8E-18 T 18-10-2018 IPR021242 Protein of unknown function DUF2799 RU84_14420 8881b4b6e4d5ac1d6956a5aeabbc8d2a 219 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 16 218 41.825 T 18-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_14420 8881b4b6e4d5ac1d6956a5aeabbc8d2a 219 Gene3D G3DSA:3.90.870.10 7 218 4.5E-87 T 18-10-2018 RU84_14420 8881b4b6e4d5ac1d6956a5aeabbc8d2a 219 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 19 214 1.9E-77 T 18-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_14420 8881b4b6e4d5ac1d6956a5aeabbc8d2a 219 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 22 213 8.1E-81 T 18-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 RU84_14420 8881b4b6e4d5ac1d6956a5aeabbc8d2a 219 SUPERFAMILY SSF55821 17 217 1.81E-82 T 18-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily RU84_04015 1a75f6c450381530e29b75a42f3bffbb 210 Gene3D G3DSA:2.160.10.10 8 210 4.4E-58 T 18-10-2018 RU84_04015 1a75f6c450381530e29b75a42f3bffbb 210 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 1.7E-9 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_04015 1a75f6c450381530e29b75a42f3bffbb 210 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 118 146 - T 18-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 RU84_04015 1a75f6c450381530e29b75a42f3bffbb 210 SUPERFAMILY SSF51161 65 204 1.14E-38 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_05410 dfad643233675a73d31429b28e260707 264 PIRSF PIRSF009141 2 260 3.1E-73 T 18-10-2018 IPR008535 Protein of unknown function DUF817 RU84_05410 dfad643233675a73d31429b28e260707 264 Pfam PF05675 Protein of unknown function (DUF817) 9 245 6.8E-82 T 18-10-2018 IPR008535 Protein of unknown function DUF817 RU84_03530 d58d96e4414932968d07c934f0316c89 249 Pfam PF16142 Domain of unknown function (DUF4850) 59 243 6.2E-70 T 18-10-2018 IPR032322 Protein of unknown function DUF4850 RU84_00870 9be181892e2fb0377054b02cd5f60791 180 Pfam PF00857 Isochorismatase family 4 175 3.4E-36 T 18-10-2018 IPR000868 Isochorismatase-like GO:0003824 RU84_00870 9be181892e2fb0377054b02cd5f60791 180 SUPERFAMILY SSF52499 2 178 3.79E-47 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_00870 9be181892e2fb0377054b02cd5f60791 180 Gene3D G3DSA:3.40.50.850 1 180 4.4E-48 T 18-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 RU84_15060 ab977796cd1182199f2467b564210e83 176 SUPERFAMILY SSF51161 20 172 8.87E-46 T 18-10-2018 IPR011004 Trimeric LpxA-like superfamily RU84_15060 ab977796cd1182199f2467b564210e83 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 123 3.9E-11 T 18-10-2018 IPR001451 Hexapeptide repeat RU84_15060 ab977796cd1182199f2467b564210e83 176 Gene3D G3DSA:2.160.10.10 1 173 3.3E-63 T 18-10-2018 RU84_14720 e6b8597d0e806a732d5bfb84ef4d49cc 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 42.558 T 18-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RU84_14720 e6b8597d0e806a732d5bfb84ef4d49cc 211 Pfam PF14681 Uracil phosphoribosyltransferase 7 206 1.6E-63 T 18-10-2018 RU84_14720 e6b8597d0e806a732d5bfb84ef4d49cc 211 Gene3D G3DSA:3.40.50.2020 2 207 5.0E-70 T 18-10-2018 RU84_14720 e6b8597d0e806a732d5bfb84ef4d49cc 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 6.7E-86 T 18-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 RU84_14720 e6b8597d0e806a732d5bfb84ef4d49cc 211 SUPERFAMILY SSF53271 5 206 1.21E-65 T 18-10-2018 IPR029057 Phosphoribosyltransferase-like RU84_04265 b5391ccaa17cea17526183cfac76156f 287 Pfam PF10118 Predicted metal-dependent hydrolase 14 260 2.9E-58 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_04265 b5391ccaa17cea17526183cfac76156f 287 PIRSF PIRSF007580 1 280 1.7E-51 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_08055 6eb7a7f4896a46cef7528fb43bef3e70 175 Pfam PF13577 SnoaL-like domain 16 150 1.9E-19 T 18-10-2018 IPR037401 SnoaL-like domain RU84_08055 6eb7a7f4896a46cef7528fb43bef3e70 175 Gene3D G3DSA:3.10.450.50 11 160 1.3E-23 T 18-10-2018 RU84_08055 6eb7a7f4896a46cef7528fb43bef3e70 175 SUPERFAMILY SSF54427 8 163 7.76E-22 T 18-10-2018 IPR032710 NTF2-like domain superfamily RU84_01810 2f4960646ca3738414d5a9799974d35a 689 SUPERFAMILY SSF109604 337 489 1.57E-15 T 18-10-2018 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 687 24.811 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 7 550 2.2E-202 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 5.2E-33 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 393 412 5.2E-33 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 5.2E-33 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 5.2E-33 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 5.2E-33 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 Pfam PF05746 DALR anticodon binding domain 582 679 6.9E-8 T 18-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 RU84_01810 2f4960646ca3738414d5a9799974d35a 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 688 1.0E-232 T 18-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 RU84_17860 0f8f850b19eb1afe31c8b741a4c2ff12 221 Pfam PF00849 RNA pseudouridylate synthase 24 171 5.7E-28 T 18-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_17860 0f8f850b19eb1afe31c8b741a4c2ff12 221 SUPERFAMILY SSF55120 12 220 5.76E-58 T 18-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 RU84_17860 0f8f850b19eb1afe31c8b741a4c2ff12 221 Gene3D G3DSA:3.30.2350.10 7 220 9.9E-65 T 18-10-2018 RU84_03900 4a66592669a75df779e26d24dd0545d0 174 Pfam PF03695 Uncharacterised protein family (UPF0149) 7 170 1.3E-20 T 18-10-2018 IPR011978 Uncharacterised protein family UPF0149 RU84_03900 4a66592669a75df779e26d24dd0545d0 174 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 6 169 4.0E-22 T 18-10-2018 IPR011978 Uncharacterised protein family UPF0149 RU84_03900 4a66592669a75df779e26d24dd0545d0 174 Gene3D G3DSA:1.20.120.740 3 164 1.6E-6 T 18-10-2018 RU84_03900 4a66592669a75df779e26d24dd0545d0 174 SUPERFAMILY SSF101327 4 172 2.48E-24 T 18-10-2018 IPR036255 YgfB-like superfamily RU84_05140 fc578df9355157aee810534169850550 728 Gene3D G3DSA:2.60.40.10 514 610 7.6E-15 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_05140 fc578df9355157aee810534169850550 728 Gene3D G3DSA:2.60.40.10 167 243 6.2E-13 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_05140 fc578df9355157aee810534169850550 728 Gene3D G3DSA:2.60.40.10 252 330 1.3E-13 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_05140 fc578df9355157aee810534169850550 728 Gene3D G3DSA:2.60.40.10 337 415 1.0E-13 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_05140 fc578df9355157aee810534169850550 728 Gene3D G3DSA:2.60.40.10 422 499 3.3E-14 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_19030 5f215c43104e11203912c66b63daf2fc 143 Gene3D G3DSA:2.30.30.100 59 131 1.5E-6 T 18-10-2018 RU84_01720 bb13e3c0570a7e4adeedffc8a0373655 425 SUPERFAMILY SSF53474 54 180 1.53E-5 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 SUPERFAMILY SSF51735 1 161 3.58E-49 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 18-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 Gene3D G3DSA:1.10.1040.10 164 294 2.5E-47 T 18-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 Gene3D G3DSA:3.40.50.720 1 163 9.2E-62 T 18-10-2018 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 PIRSF PIRSF000103 1 295 1.4E-77 T 18-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 5 291 2.8E-121 T 18-10-2018 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|Reactome: R-HSA-70895 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 SUPERFAMILY SSF48179 162 291 4.31E-39 T 18-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 3.5E-53 T 18-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 RU84_17795 c4c45f2ec626e2b6832bedc6b9e0d593 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 289 4.8E-36 T 18-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 Pfam PF02110 Hydroxyethylthiazole kinase family 17 258 1.3E-64 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 17 263 27.706 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 36 57 6.2E-25 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 93 110 6.2E-25 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 30 6.2E-25 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 124 138 6.2E-25 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 167 184 6.2E-25 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 67 75 6.2E-25 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 SUPERFAMILY SSF53613 12 268 3.05E-49 T 18-10-2018 IPR029056 Ribokinase-like RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 PIRSF PIRSF000513 9 271 1.5E-72 T 18-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 RU84_06915 06f09f33a0801fb1297ea3ad949808a8 275 Gene3D G3DSA:3.40.1190.20 1 271 1.3E-77 T 18-10-2018 IPR029056 Ribokinase-like RU84_10205 d5dfea40a0bff80135d1c37aa9f767ba 169 SMART SM00450 46 152 6.9E-14 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_10205 d5dfea40a0bff80135d1c37aa9f767ba 169 Gene3D G3DSA:3.40.250.10 40 169 1.1E-34 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_10205 d5dfea40a0bff80135d1c37aa9f767ba 169 SUPERFAMILY SSF52821 42 166 8.64E-22 T 18-10-2018 IPR036873 Rhodanese-like domain superfamily RU84_10205 d5dfea40a0bff80135d1c37aa9f767ba 169 Pfam PF00581 Rhodanese-like domain 48 145 3.8E-13 T 18-10-2018 IPR001763 Rhodanese-like domain RU84_14625 76cf9f5e5e21150f52449ec31d8eb0fa 290 Gene3D G3DSA:3.40.50.1580 41 287 2.9E-73 T 18-10-2018 RU84_14625 76cf9f5e5e21150f52449ec31d8eb0fa 290 SUPERFAMILY SSF53167 44 265 1.11E-44 T 18-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 RU84_14625 76cf9f5e5e21150f52449ec31d8eb0fa 290 Pfam PF01048 Phosphorylase superfamily 44 260 2.7E-39 T 18-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 RU84_04425 5b9f284de09fd0c147274a435201d13c 155 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 21 147 9.0E-46 T 18-10-2018 IPR003791 Protein of unknown function UPF0178 RU84_04425 5b9f284de09fd0c147274a435201d13c 155 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 4 150 27.847 T 18-10-2018 IPR003791 Protein of unknown function UPF0178 RU84_07980 1c2821bdf6788ba809b11fc33b708666 137 Pfam PF04143 Sulphur transport 8 127 5.0E-9 T 18-10-2018 IPR007272 Sulphur transport domain RU84_13665 4a2d1ed58497dcde0a1cf5c7b94191f4 507 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 493 6.3E-137 T 18-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 RU84_13665 4a2d1ed58497dcde0a1cf5c7b94191f4 507 SUPERFAMILY SSF103473 9 499 4.32E-67 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_13665 4a2d1ed58497dcde0a1cf5c7b94191f4 507 Gene3D G3DSA:1.20.1250.20 272 502 1.2E-14 T 18-10-2018 RU84_13665 4a2d1ed58497dcde0a1cf5c7b94191f4 507 Gene3D G3DSA:1.20.1720.10 18 256 5.2E-47 T 18-10-2018 RU84_13665 4a2d1ed58497dcde0a1cf5c7b94191f4 507 Pfam PF07690 Major Facilitator Superfamily 22 416 3.2E-54 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_04350 d0f066687035ba39f91359b53ec85f18 207 Pfam PF01810 LysE type translocator 15 205 3.1E-34 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_04350 d0f066687035ba39f91359b53ec85f18 207 PIRSF PIRSF006324 1 207 1.8E-51 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_07635 2372a26564c76b5f66e6d54645e5a739 286 SUPERFAMILY SSF53474 4 270 1.47E-33 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07635 2372a26564c76b5f66e6d54645e5a739 286 Gene3D G3DSA:3.40.50.1820 3 282 9.9E-30 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07635 2372a26564c76b5f66e6d54645e5a739 286 Pfam PF12146 Serine aminopeptidase, S33 34 248 4.7E-10 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_07635 2372a26564c76b5f66e6d54645e5a739 286 PIRSF PIRSF037442 1 285 8.4E-74 T 18-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 RU84_11245 d2757cc30aeb012314544552e8fb46dc 135 Gene3D G3DSA:3.90.1590.10 1 118 2.3E-23 T 18-10-2018 RU84_11245 d2757cc30aeb012314544552e8fb46dc 135 SUPERFAMILY SSF51316 1 132 5.02E-40 T 18-10-2018 IPR011057 Mss4-like superfamily RU84_11245 d2757cc30aeb012314544552e8fb46dc 135 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 25 112 7.8E-19 T 18-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RU84_19045 60b5735205b7ac9cfcaaad6556311ffe 254 SUPERFAMILY SSF56281 51 253 2.8E-30 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_19045 60b5735205b7ac9cfcaaad6556311ffe 254 SMART SM00849 74 250 2.4E-13 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_19045 60b5735205b7ac9cfcaaad6556311ffe 254 Pfam PF00753 Metallo-beta-lactamase superfamily 72 233 4.6E-9 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_19045 60b5735205b7ac9cfcaaad6556311ffe 254 Gene3D G3DSA:3.60.15.10 29 254 3.6E-92 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_12615 c0a78aba0ba3905a1e046bcab85856b6 258 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 257 1.7E-42 T 18-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 RU84_12615 c0a78aba0ba3905a1e046bcab85856b6 258 SUPERFAMILY SSF53213 6 258 4.19E-84 T 18-10-2018 RU84_12615 c0a78aba0ba3905a1e046bcab85856b6 258 Gene3D G3DSA:3.40.830.10 2 258 3.7E-85 T 18-10-2018 RU84_12615 c0a78aba0ba3905a1e046bcab85856b6 258 PIRSF PIRSF006157 1 258 6.0E-83 T 18-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 RU84_18450 76cc846305c55b338a60a65680b3b42c 190 ProSitePatterns PS00856 Guanylate kinase-like signature. 33 50 - T 18-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 RU84_18450 76cc846305c55b338a60a65680b3b42c 190 Pfam PF00625 Guanylate kinase 3 177 1.5E-23 T 18-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RU84_18450 76cc846305c55b338a60a65680b3b42c 190 SUPERFAMILY SSF52540 3 181 1.89E-30 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18450 76cc846305c55b338a60a65680b3b42c 190 SMART SM00072 1 181 2.5E-13 T 18-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit RU84_18450 76cc846305c55b338a60a65680b3b42c 190 Gene3D G3DSA:3.40.50.300 1 183 1.0E-29 T 18-10-2018 RU84_03335 95aa83997306f150743ba0df99ad25b0 149 Gene3D G3DSA:3.30.530.20 3 148 6.2E-39 T 18-10-2018 IPR023393 START-like domain superfamily RU84_03335 95aa83997306f150743ba0df99ad25b0 149 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 13 142 3.1E-26 T 18-10-2018 IPR013538 Activator of Hsp90 ATPase homologue 1-like RU84_03335 95aa83997306f150743ba0df99ad25b0 149 SUPERFAMILY SSF55961 3 144 5.11E-43 T 18-10-2018 RU84_01840 b453963cc61dfd905ae1394f2b6ba8a9 84 Pfam PF04024 PspC domain 6 63 8.9E-21 T 18-10-2018 IPR007168 Phage shock protein, PspC, N-terminal RU84_07650 97a98836a0b9c4c2d5f5007e85669e13 139 Gene3D G3DSA:3.30.450.150 1 135 1.9E-29 T 18-10-2018 IPR038084 GlcG-like domain superfamily RU84_07650 97a98836a0b9c4c2d5f5007e85669e13 139 SUPERFAMILY SSF143744 3 134 1.24E-29 T 18-10-2018 IPR038084 GlcG-like domain superfamily RU84_07650 97a98836a0b9c4c2d5f5007e85669e13 139 Pfam PF03928 Haem-degrading 7 130 3.7E-22 T 18-10-2018 IPR005624 Haem-degrading RU84_10140 1c751fb21e31c012ce5082c9dfbe199e 224 SUPERFAMILY SSF51182 134 217 6.85E-10 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_10140 1c751fb21e31c012ce5082c9dfbe199e 224 SUPERFAMILY SSF51182 3 126 4.6E-28 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_10140 1c751fb21e31c012ce5082c9dfbe199e 224 Pfam PF12973 ChrR Cupin-like domain 19 109 5.2E-34 T 18-10-2018 IPR025979 ChrR-like cupin domain RU84_10140 1c751fb21e31c012ce5082c9dfbe199e 224 Pfam PF12973 ChrR Cupin-like domain 143 213 2.5E-7 T 18-10-2018 IPR025979 ChrR-like cupin domain RU84_10140 1c751fb21e31c012ce5082c9dfbe199e 224 Gene3D G3DSA:2.60.120.10 2 222 2.4E-72 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_00610 1e9cbe080bc469c733d8e11a73f36d37 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 3 188 4.6E-40 T 18-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA RU84_00610 1e9cbe080bc469c733d8e11a73f36d37 193 Gene3D G3DSA:3.40.50.1820 1 192 7.8E-52 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00610 1e9cbe080bc469c733d8e11a73f36d37 193 SUPERFAMILY SSF53474 3 191 9.06E-20 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07965 949913eed25cada3a864f86cd90518a9 439 Gene3D G3DSA:2.40.160.180 26 439 2.8E-120 T 18-10-2018 IPR038673 Carbohydrate-selective porin OprB superfamily RU84_07965 949913eed25cada3a864f86cd90518a9 439 Pfam PF04966 Carbohydrate-selective porin, OprB family 71 439 2.6E-92 T 18-10-2018 IPR007049 Carbohydrate-selective porin OprB GO:0008643|GO:0015288|GO:0016021 RU84_05775 7e18cdd1d54124de1fe2eaf9853bd6b0 456 Pfam PF16325 Peptidase family U32 C-terminal domain 358 437 2.1E-20 T 18-10-2018 IPR032525 Peptidase family U32, C-terminal RU84_05775 7e18cdd1d54124de1fe2eaf9853bd6b0 456 Gene3D G3DSA:2.40.30.10 354 438 4.6E-10 T 18-10-2018 RU84_05775 7e18cdd1d54124de1fe2eaf9853bd6b0 456 Pfam PF01136 Peptidase family U32 75 340 1.3E-94 T 18-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RU84_05775 7e18cdd1d54124de1fe2eaf9853bd6b0 456 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 18-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 RU84_07465 636760399432843518d57a8bae2c675e 274 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 225 251 - T 18-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 RU84_07465 636760399432843518d57a8bae2c675e 274 Pfam PF01148 Cytidylyltransferase family 3 265 1.1E-59 T 18-10-2018 RU84_09450 38360d75ebd487b3365318b8a081566b 229 Gene3D G3DSA:3.90.550.10 1 226 1.4E-57 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_09450 38360d75ebd487b3365318b8a081566b 229 SUPERFAMILY SSF53448 1 223 6.53E-54 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_09450 38360d75ebd487b3365318b8a081566b 229 Pfam PF00483 Nucleotidyl transferase 2 138 1.8E-18 T 18-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RU84_09055 6ce0f762097ce1617026155cb97fd820 256 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 221 243 1.0E-5 T 18-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 RU84_13795 f874e53a9ba18e35d365a9429bf54e84 308 SMART SM00563 94 236 4.0E-9 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_13795 f874e53a9ba18e35d365a9429bf54e84 308 Pfam PF01553 Acyltransferase 90 235 4.4E-10 T 18-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 RU84_13795 f874e53a9ba18e35d365a9429bf54e84 308 SUPERFAMILY SSF69593 80 306 1.83E-29 T 18-10-2018 RU84_11300 494e12434e41242bbdf072951a4299ee 293 Pfam PF13557 Putative MetA-pathway of phenol degradation 64 289 2.3E-61 T 18-10-2018 IPR025737 MetA-pathway of phenol degradation, putative RU84_02940 a3a6bcbb7ba86a383dda57e44bfad48e 269 SUPERFAMILY SSF88713 49 247 5.44E-42 T 18-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RU84_02940 a3a6bcbb7ba86a383dda57e44bfad48e 269 Pfam PF01522 Polysaccharide deacetylase 84 225 6.5E-30 T 18-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 RU84_02940 a3a6bcbb7ba86a383dda57e44bfad48e 269 Gene3D G3DSA:3.20.20.370 27 263 7.7E-65 T 18-10-2018 RU84_18465 8e2a09a274ba946e4ab97e7ae91446a7 225 SUPERFAMILY SSF52540 2 224 4.72E-26 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_18465 8e2a09a274ba946e4ab97e7ae91446a7 225 PIRSF PIRSF009320 1 225 5.8E-32 T 18-10-2018 RU84_18465 8e2a09a274ba946e4ab97e7ae91446a7 225 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 186 1.1E-12 T 18-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain RU84_18465 8e2a09a274ba946e4ab97e7ae91446a7 225 Gene3D G3DSA:3.40.50.300 2 225 8.1E-38 T 18-10-2018 RU84_05825 2be2fa698b148dc97d75af88e7ea469f 56 Gene3D G3DSA:2.10.70.10 19 56 8.6E-18 T 18-10-2018 RU84_05825 2be2fa698b148dc97d75af88e7ea469f 56 Pfam PF10636 Hemin uptake protein hemP 21 56 1.4E-16 T 18-10-2018 IPR019600 Hemin uptake protein HemP RU84_15130 effc313f577d34ed665ca44ba45c079f 418 Gene3D G3DSA:3.65.10.10 21 229 2.2E-176 T 18-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RU84_15130 effc313f577d34ed665ca44ba45c079f 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 2.9E-108 T 18-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 RU84_15130 effc313f577d34ed665ca44ba45c079f 418 SUPERFAMILY SSF55205 1 417 1.57E-143 T 18-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 RU84_15130 effc313f577d34ed665ca44ba45c079f 418 Gene3D G3DSA:3.65.10.10 6 414 2.2E-176 T 18-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 RU84_15130 effc313f577d34ed665ca44ba45c079f 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 5.8E-176 T 18-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_15130 effc313f577d34ed665ca44ba45c079f 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.358 T 18-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 RU84_10705 a122b230aa5437c8b52a3d55f4ce12a3 127 SUPERFAMILY SSF54637 9 124 1.13E-22 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_10705 a122b230aa5437c8b52a3d55f4ce12a3 127 Pfam PF03061 Thioesterase superfamily 43 109 2.9E-6 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_10705 a122b230aa5437c8b52a3d55f4ce12a3 127 Gene3D G3DSA:3.10.129.10 2 127 5.0E-32 T 18-10-2018 RU84_10705 a122b230aa5437c8b52a3d55f4ce12a3 127 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 12 123 9.6E-19 T 18-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 RU84_08400 43e09f67f5e958787867a27b064e1b28 391 Gene3D G3DSA:3.90.850.10 148 371 4.3E-44 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_08400 43e09f67f5e958787867a27b064e1b28 391 SUPERFAMILY SSF56529 162 372 1.44E-26 T 18-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 RU84_08400 43e09f67f5e958787867a27b064e1b28 391 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 217 365 4.6E-8 T 18-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 ProSitePatterns PS00534 Ferrochelatase signature. 197 216 - T 18-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 TIGRFAM TIGR00109 hemH: ferrochelatase 6 328 2.8E-92 T 18-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 SUPERFAMILY SSF53800 6 333 4.74E-96 T 18-10-2018 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 Gene3D G3DSA:3.40.50.1400 8 329 1.5E-92 T 18-10-2018 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 Gene3D G3DSA:3.40.50.1400 171 309 1.5E-92 T 18-10-2018 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 Hamap MF_00323 Ferrochelatase [hemH]. 7 328 35.385 T 18-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RU84_16500 c9ebb2ec86aaaf528406de7d95f52674 338 Pfam PF00762 Ferrochelatase 8 327 6.3E-102 T 18-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 RU84_00975 af60a220c89c3a5b707b763ef9428954 193 SUPERFAMILY SSF50249 2 193 8.57E-51 T 18-10-2018 IPR012340 Nucleic acid-binding, OB-fold RU84_00975 af60a220c89c3a5b707b763ef9428954 193 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 34.897 T 18-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RU84_00975 af60a220c89c3a5b707b763ef9428954 193 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 193 2.0E-50 T 18-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 RU84_00975 af60a220c89c3a5b707b763ef9428954 193 Gene3D G3DSA:2.40.50.140 1 122 2.2E-43 T 18-10-2018 RU84_00975 af60a220c89c3a5b707b763ef9428954 193 Pfam PF00436 Single-strand binding protein family 4 108 2.7E-38 T 18-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 RU84_14665 78d54a99f3eb3e2f99f1d2678a4b004c 547 Gene3D G3DSA:1.20.1250.20 33 228 3.6E-17 T 18-10-2018 RU84_14665 78d54a99f3eb3e2f99f1d2678a4b004c 547 Pfam PF07690 Major Facilitator Superfamily 44 439 2.0E-15 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_14665 78d54a99f3eb3e2f99f1d2678a4b004c 547 SUPERFAMILY SSF103473 25 449 3.92E-22 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_18020 a5f7bd9fe2757c81e10efee371914561 229 Gene3D G3DSA:3.90.550.10 2 225 5.1E-69 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_18020 a5f7bd9fe2757c81e10efee371914561 229 SUPERFAMILY SSF53448 3 227 5.39E-60 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_18020 a5f7bd9fe2757c81e10efee371914561 229 TIGRFAM TIGR03584 PseF: pseudaminic acid cytidylyltransferase 3 224 2.3E-104 T 18-10-2018 IPR020039 Pseudaminic acid cytidylyltransferase KEGG: 00520+2.7.7.81|MetaCyc: PWY-6143 RU84_18020 a5f7bd9fe2757c81e10efee371914561 229 Pfam PF02348 Cytidylyltransferase 4 209 4.4E-37 T 18-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 RU84_14490 b42a90c73a3677b0d1cecdcbbf17ec3a 218 Pfam PF13500 AAA domain 6 178 2.0E-34 T 18-10-2018 RU84_14490 b42a90c73a3677b0d1cecdcbbf17ec3a 218 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 3 215 25.273 T 18-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RU84_14490 b42a90c73a3677b0d1cecdcbbf17ec3a 218 Gene3D G3DSA:3.40.50.300 1 207 1.7E-55 T 18-10-2018 RU84_14490 b42a90c73a3677b0d1cecdcbbf17ec3a 218 PIRSF PIRSF006755 3 217 1.6E-58 T 18-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RU84_14490 b42a90c73a3677b0d1cecdcbbf17ec3a 218 SUPERFAMILY SSF52540 1 200 7.38E-44 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_14490 b42a90c73a3677b0d1cecdcbbf17ec3a 218 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 176 2.5E-50 T 18-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 RU84_02375 7f174602eecc56b68ab6c9fa019b70a0 187 Pfam PF14066 Protein of unknown function (DUF4256) 15 187 2.1E-89 T 18-10-2018 IPR025352 Protein of unknown function DUF4256 RU84_06615 364b97f87e42835dbef9a43259687dc7 334 Gene3D G3DSA:3.20.20.30 4 332 3.0E-98 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_06615 364b97f87e42835dbef9a43259687dc7 334 Pfam PF00296 Luciferase-like monooxygenase 23 297 1.9E-42 T 18-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 RU84_06615 364b97f87e42835dbef9a43259687dc7 334 SUPERFAMILY SSF51679 8 328 4.84E-89 T 18-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 RU84_06615 364b97f87e42835dbef9a43259687dc7 334 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 329 2.5E-129 T 18-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 RU84_00560 7174ef9ff9212010b7618c2128ab6cdf 179 SUPERFAMILY SSF48452 3 175 3.11E-67 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_00560 7174ef9ff9212010b7618c2128ab6cdf 179 Gene3D G3DSA:1.25.40.10 79 179 2.6E-32 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_00560 7174ef9ff9212010b7618c2128ab6cdf 179 Gene3D G3DSA:1.20.58.320 1 78 2.0E-27 T 18-10-2018 RU84_00560 7174ef9ff9212010b7618c2128ab6cdf 179 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 175 1.2E-63 T 18-10-2018 IPR010323 Protein of unknown function DUF924 RU84_04395 c29499d8a0b0c61e19763de5bf98132e 363 Pfam PF12698 ABC-2 family transporter protein 19 355 7.4E-37 T 18-10-2018 RU84_16245 8d76e7e3ea64f1bcfa38eb5c76cdb85b 336 SMART SM00342 248 330 3.8E-23 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_16245 8d76e7e3ea64f1bcfa38eb5c76cdb85b 336 Gene3D G3DSA:1.10.10.60 228 336 1.1E-25 T 18-10-2018 RU84_16245 8d76e7e3ea64f1bcfa38eb5c76cdb85b 336 SUPERFAMILY SSF46689 283 333 5.82E-13 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_16245 8d76e7e3ea64f1bcfa38eb5c76cdb85b 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 202 8.6E-35 T 18-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal RU84_16245 8d76e7e3ea64f1bcfa38eb5c76cdb85b 336 Pfam PF12833 Helix-turn-helix domain 254 332 7.6E-19 T 18-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 RU84_16140 6d17c9fd16af7af59c5302c3fdb5ccc3 119 SUPERFAMILY SSF88697 3 118 1.14E-15 T 18-10-2018 IPR015947 PUA-like superfamily RU84_16140 6d17c9fd16af7af59c5302c3fdb5ccc3 119 Pfam PF04266 ASCH domain 7 91 7.2E-6 T 18-10-2018 IPR007374 ASCH domain RU84_06865 350502d0b3883ecdb40b526ab49f4347 240 Gene3D G3DSA:3.40.50.880 3 235 5.0E-55 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_06865 350502d0b3883ecdb40b526ab49f4347 240 SUPERFAMILY SSF52317 46 236 1.14E-45 T 18-10-2018 IPR029062 Class I glutamine amidotransferase-like RU84_06865 350502d0b3883ecdb40b526ab49f4347 240 Pfam PF00117 Glutamine amidotransferase class-I 25 190 5.4E-20 T 18-10-2018 IPR017926 Glutamine amidotransferase RU84_02900 16ba5d594a5b26de56620d9fcca14fd5 329 Pfam PF05125 Phage major capsid protein, P2 family 8 326 4.6E-131 T 18-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid RU84_02900 16ba5d594a5b26de56620d9fcca14fd5 329 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 11 326 2.0E-89 T 18-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid RU84_09035 d6e085e159a6d113aff123a784e2a815 507 Pfam PF03929 PepSY-associated TM region 10 364 3.0E-56 T 18-10-2018 IPR005625 PepSY-associated TM protein RU84_07550 6b074dc24075e587dd5341cef504c0c1 178 SUPERFAMILY SSF55729 1 169 6.38E-43 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_07550 6b074dc24075e587dd5341cef504c0c1 178 Gene3D G3DSA:3.40.630.30 1 156 3.9E-44 T 18-10-2018 RU84_07550 6b074dc24075e587dd5341cef504c0c1 178 Pfam PF13302 Acetyltransferase (GNAT) domain 6 147 1.6E-33 T 18-10-2018 IPR000182 GNAT domain RU84_12660 af1a359dd266d5ec3614ab9880ee38f4 183 SUPERFAMILY SSF53335 4 179 5.77E-48 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_12660 af1a359dd266d5ec3614ab9880ee38f4 183 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 180 1.3E-50 T 18-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RU84_12660 af1a359dd266d5ec3614ab9880ee38f4 183 Gene3D G3DSA:3.40.50.150 1 182 1.3E-54 T 18-10-2018 RU84_12660 af1a359dd266d5ec3614ab9880ee38f4 183 PIRSF PIRSF004553 4 182 8.7E-47 T 18-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 RU84_12660 af1a359dd266d5ec3614ab9880ee38f4 183 Pfam PF03602 Conserved hypothetical protein 95 5 179 5.1E-54 T 18-10-2018 RU84_12660 af1a359dd266d5ec3614ab9880ee38f4 183 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 117 123 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_06180 73ff3668a91af19a2321b1f3e9274548 201 Pfam PF01810 LysE type translocator 13 190 4.9E-14 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_02315 4a35ad5f79277f78038101e15c8b0b3a 81 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 1.2E-26 T 18-10-2018 IPR021250 Protein of unknown function DUF2789 RU84_02315 4a35ad5f79277f78038101e15c8b0b3a 81 Gene3D G3DSA:1.10.10.1130 1 79 4.4E-28 T 18-10-2018 RU84_07615 65052d5fb82e7a5b99bb44005bdaac87 168 Pfam PF08308 PEGA domain 28 91 9.0E-5 T 18-10-2018 IPR013229 PEGA RU84_03910 49ed649dfab2c8b39ef8bc05309c8358 161 Pfam PF06945 Protein of unknown function (DUF1289) 11 56 6.1E-15 T 18-10-2018 IPR010710 Protein of unknown function DUF1289 RU84_03125 ac30182324cce2e400d9b6939fccf47c 356 Gene3D G3DSA:3.30.70.1070 267 341 7.3E-8 T 18-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RU84_03125 ac30182324cce2e400d9b6939fccf47c 356 Pfam PF05036 Sporulation related domain 272 344 2.2E-14 T 18-10-2018 IPR007730 Sporulation-like domain GO:0042834 RU84_03125 ac30182324cce2e400d9b6939fccf47c 356 SUPERFAMILY SSF110997 271 344 1.31E-13 T 18-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RU84_09155 3a5d820f1a826a18a6cc686095dbf625 106 Gene3D G3DSA:2.60.300.12 1 106 1.4E-37 T 18-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RU84_09155 3a5d820f1a826a18a6cc686095dbf625 106 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 2 106 2.4E-52 T 18-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 RU84_09155 3a5d820f1a826a18a6cc686095dbf625 106 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 87 104 - T 18-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 RU84_09155 3a5d820f1a826a18a6cc686095dbf625 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 106 9.4E-37 T 18-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 RU84_09155 3a5d820f1a826a18a6cc686095dbf625 106 SUPERFAMILY SSF89360 1 95 7.85E-33 T 18-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 RU84_09155 3a5d820f1a826a18a6cc686095dbf625 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 1.6E-22 T 18-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 RU84_06695 920ef1de3237599853f6164ef79cfb09 569 Pfam PF03814 Potassium-transporting ATPase A subunit 6 564 1.2E-215 T 18-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RU84_06695 920ef1de3237599853f6164ef79cfb09 569 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 566 28.115 T 18-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RU84_06695 920ef1de3237599853f6164ef79cfb09 569 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 3 565 3.3E-166 T 18-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RU84_06695 920ef1de3237599853f6164ef79cfb09 569 PIRSF PIRSF001294 1 568 2.8E-220 T 18-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 RU84_00155 f5b86238739ea10cc5ae7d4bedee863c 431 Pfam PF00860 Permease family 30 399 3.3E-96 T 18-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RU84_00155 f5b86238739ea10cc5ae7d4bedee863c 431 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 27 423 9.5E-110 T 18-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 RU84_14845 fa8542d0da1d772cfb667a7097b2a689 431 SUPERFAMILY SSF52980 69 131 1.55E-6 T 18-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RU84_14845 fa8542d0da1d772cfb667a7097b2a689 431 Pfam PF04471 Restriction endonuclease 65 129 9.8E-8 T 18-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 RU84_14845 fa8542d0da1d772cfb667a7097b2a689 431 Pfam PF06114 IrrE N-terminal-like domain 286 355 4.1E-9 T 18-10-2018 IPR010359 IrrE N-terminal-like domain RU84_12905 266b9369c0097641085755a00c420fd0 433 Pfam PF07690 Major Facilitator Superfamily 29 392 1.3E-43 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_12905 266b9369c0097641085755a00c420fd0 433 SUPERFAMILY SSF103473 8 427 1.27E-81 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_12905 266b9369c0097641085755a00c420fd0 433 Gene3D G3DSA:1.20.1250.20 5 430 1.0E-81 T 18-10-2018 RU84_06545 f487ba1d616d0807554478ae39c7638c 127 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 18-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_06545 f487ba1d616d0807554478ae39c7638c 127 Gene3D G3DSA:3.30.70.60 1 92 2.0E-29 T 18-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 RU84_06545 f487ba1d616d0807554478ae39c7638c 127 SUPERFAMILY SSF54995 1 101 5.76E-36 T 18-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06545 f487ba1d616d0807554478ae39c7638c 127 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.701 T 18-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 RU84_06545 f487ba1d616d0807554478ae39c7638c 127 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 5.1E-33 T 18-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_06545 f487ba1d616d0807554478ae39c7638c 127 Pfam PF01250 Ribosomal protein S6 3 91 1.4E-24 T 18-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_16820 fce5b3beb96412926609fd7cf102dc0f 68 Pfam PF07869 Protein of unknown function (DUF1656) 3 56 8.4E-12 T 18-10-2018 IPR012451 Protein of unknown function DUF1656 RU84_17265 c33ac30ad07fa616e1bacb30854956d1 430 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 29 348 1.3E-25 T 18-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 RU84_17265 c33ac30ad07fa616e1bacb30854956d1 430 SUPERFAMILY SSF53335 23 357 2.95E-38 T 18-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase RU84_17265 c33ac30ad07fa616e1bacb30854956d1 430 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 262 268 - T 18-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 RU84_18015 97e906abf9bf41a5a2779d6db1fc70c1 360 Gene3D G3DSA:3.40.50.11190 3 169 6.3E-38 T 18-10-2018 RU84_18015 97e906abf9bf41a5a2779d6db1fc70c1 360 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 3 292 1.4E-72 T 18-10-2018 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase RU84_18015 97e906abf9bf41a5a2779d6db1fc70c1 360 SUPERFAMILY SSF53756 3 356 1.13E-6 T 18-10-2018 RU84_18015 97e906abf9bf41a5a2779d6db1fc70c1 360 Gene3D G3DSA:3.40.50.2000 170 308 1.3E-29 T 18-10-2018 RU84_02510 0a49036f1da3a0c96ed4f1585b290037 224 Pfam PF04172 LrgB-like family 11 218 5.7E-51 T 18-10-2018 IPR007300 CidB/LrgB family RU84_08525 901e8f9686159a16f5ed56ddaf95eb21 146 Gene3D G3DSA:1.10.3210.10 2 146 1.3E-21 T 18-10-2018 RU84_08525 901e8f9686159a16f5ed56ddaf95eb21 146 Pfam PF13328 HD domain 11 93 5.1E-9 T 18-10-2018 IPR003607 HD/PDEase domain RU84_08525 901e8f9686159a16f5ed56ddaf95eb21 146 SUPERFAMILY SSF109604 4 138 4.08E-22 T 18-10-2018 RU84_12825 3eaee0e7b3a6c7bde16eb657443801d4 207 Gene3D G3DSA:3.40.50.1110 25 207 5.3E-66 T 18-10-2018 IPR036514 SGNH hydrolase superfamily RU84_12825 3eaee0e7b3a6c7bde16eb657443801d4 207 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 32 192 2.9E-26 T 18-10-2018 IPR013830 SGNH hydrolase-type esterase domain RU84_12825 3eaee0e7b3a6c7bde16eb657443801d4 207 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 29 39 - T 18-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 RU84_12825 3eaee0e7b3a6c7bde16eb657443801d4 207 SUPERFAMILY SSF52266 27 205 5.65E-49 T 18-10-2018 RU84_17915 990d5a964ee5443dd64b3a95fddc7b94 294 Gene3D G3DSA:3.20.20.60 3 294 1.0E-101 T 18-10-2018 RU84_17915 990d5a964ee5443dd64b3a95fddc7b94 294 Pfam PF13714 Phosphoenolpyruvate phosphomutase 15 253 9.2E-48 T 18-10-2018 RU84_17915 990d5a964ee5443dd64b3a95fddc7b94 294 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 18-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 RU84_17915 990d5a964ee5443dd64b3a95fddc7b94 294 SUPERFAMILY SSF51621 5 288 1.21E-95 T 18-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 RU84_17915 990d5a964ee5443dd64b3a95fddc7b94 294 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 4 292 49.038 T 18-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 RU84_17915 990d5a964ee5443dd64b3a95fddc7b94 294 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 7 290 3.2E-128 T 18-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 RU84_10125 f28035baaab622018ae298e700f062cc 294 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 17 280 2.0E-68 T 18-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RU84_10125 f28035baaab622018ae298e700f062cc 294 TIGRFAM TIGR03132 malonate_mdcB: triphosphoribosyl-dephospho-CoA synthase MdcB 14 284 2.8E-100 T 18-10-2018 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RU84_10125 f28035baaab622018ae298e700f062cc 294 Hamap MF_01883 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [mdcB]. 1 294 143.352 T 18-10-2018 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 RU84_08690 09811ef626b0c60cd864612e978facfc 279 Gene3D G3DSA:3.40.50.300 7 271 2.8E-65 T 18-10-2018 RU84_08690 09811ef626b0c60cd864612e978facfc 279 Pfam PF00005 ABC transporter 27 166 4.9E-31 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_08690 09811ef626b0c60cd864612e978facfc 279 SUPERFAMILY SSF52540 8 235 1.86E-70 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_08690 09811ef626b0c60cd864612e978facfc 279 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_08690 09811ef626b0c60cd864612e978facfc 279 SMART SM00382 36 217 3.5E-18 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_06140 82c1069434920973722f3b1f795e8b97 77 Pfam PF09939 Uncharacterized protein conserved in bacteria (DUF2171) 9 70 1.9E-23 T 18-10-2018 IPR018684 Protein of unknown function DUF2171 RU84_15445 94e35b48ffd3cbcc844b13183c68ba91 484 Pfam PF02233 NAD(P) transhydrogenase beta subunit 10 477 9.8E-182 T 18-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RU84_15445 94e35b48ffd3cbcc844b13183c68ba91 484 Gene3D G3DSA:3.40.50.1220 301 480 1.2E-81 T 18-10-2018 RU84_15445 94e35b48ffd3cbcc844b13183c68ba91 484 SUPERFAMILY SSF52467 308 480 6.21E-74 T 18-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily RU84_15445 94e35b48ffd3cbcc844b13183c68ba91 484 PIRSF PIRSF000204 3 481 7.4E-189 T 18-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 RU84_07565 50a3ce9652ffebed85a2c6e6940816f6 468 PIRSF PIRSF006060 5 467 9.4E-64 T 18-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 RU84_07565 50a3ce9652ffebed85a2c6e6940816f6 468 Pfam PF00324 Amino acid permease 24 436 2.8E-87 T 18-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 RU84_07565 50a3ce9652ffebed85a2c6e6940816f6 468 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 18-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 RU84_07565 50a3ce9652ffebed85a2c6e6940816f6 468 Gene3D G3DSA:1.20.1740.10 14 466 4.7E-59 T 18-10-2018 RU84_08345 06e95c693d990c333cfd829c1a11e381 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 91 112 3.4E-38 T 18-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RU84_08345 06e95c693d990c333cfd829c1a11e381 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 196 213 3.4E-38 T 18-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RU84_08345 06e95c693d990c333cfd829c1a11e381 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 155 175 3.4E-38 T 18-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RU84_08345 06e95c693d990c333cfd829c1a11e381 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 3.4E-38 T 18-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RU84_08345 06e95c693d990c333cfd829c1a11e381 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 132 154 3.4E-38 T 18-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RU84_08345 06e95c693d990c333cfd829c1a11e381 292 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 238 256 3.4E-38 T 18-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) RU84_08345 06e95c693d990c333cfd829c1a11e381 292 SUPERFAMILY SSF63829 7 284 7.19E-59 T 18-10-2018 RU84_08345 06e95c693d990c333cfd829c1a11e381 292 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 13 256 3.8E-77 T 18-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region RU84_08345 06e95c693d990c333cfd829c1a11e381 292 Gene3D G3DSA:2.120.10.30 1 292 2.8E-92 T 18-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RU84_04980 bfc8dc21979834a591885295f037fa7e 392 SUPERFAMILY SSF103473 9 380 1.07E-30 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_04980 bfc8dc21979834a591885295f037fa7e 392 Gene3D G3DSA:1.20.1250.20 199 382 7.7E-9 T 18-10-2018 RU84_04980 bfc8dc21979834a591885295f037fa7e 392 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 17 375 3.3E-54 T 18-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB RU84_04980 bfc8dc21979834a591885295f037fa7e 392 Gene3D G3DSA:1.20.1250.20 2 193 1.0E-12 T 18-10-2018 RU84_15925 1eae928ea4374ed9894b62922c68a316 452 PIRSF PIRSF002746 4 452 1.3E-157 T 18-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RU84_15925 1eae928ea4374ed9894b62922c68a316 452 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 8 452 3.0E-148 T 18-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RU84_15925 1eae928ea4374ed9894b62922c68a316 452 Pfam PF02447 GntP family permease 8 450 3.5E-159 T 18-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 RU84_18405 1de660842e095c96e0ac12581a40ee4c 106 Pfam PF01809 Haemolytic domain 3 68 8.0E-30 T 18-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RU84_18405 1de660842e095c96e0ac12581a40ee4c 106 SMART SM01234 1 68 1.5E-44 T 18-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RU84_18405 1de660842e095c96e0ac12581a40ee4c 106 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 8.0E-22 T 18-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RU84_18405 1de660842e095c96e0ac12581a40ee4c 106 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 24.37 T 18-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RU84_18405 1de660842e095c96e0ac12581a40ee4c 106 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 8 72 3.0E-28 T 18-10-2018 IPR002696 Putative membrane protein insertion efficiency factor RU84_14435 b65db4b69daa49751989b70f829c6d76 157 SMART SM00257 107 156 9.1E-14 T 18-10-2018 IPR018392 LysM domain RU84_14435 b65db4b69daa49751989b70f829c6d76 157 Pfam PF04972 BON domain 44 99 5.4E-8 T 18-10-2018 IPR007055 BON domain RU84_14435 b65db4b69daa49751989b70f829c6d76 157 Gene3D G3DSA:3.10.350.10 107 155 3.2E-15 T 18-10-2018 IPR036779 LysM domain superfamily RU84_14435 b65db4b69daa49751989b70f829c6d76 157 SUPERFAMILY SSF54106 106 156 4.32E-8 T 18-10-2018 RU84_14435 b65db4b69daa49751989b70f829c6d76 157 Pfam PF01476 LysM domain 108 156 6.7E-14 T 18-10-2018 IPR018392 LysM domain RU84_09095 8bb42dd439b098ae9770a053ed1d9a5b 457 SUPERFAMILY SSF56112 103 319 6.24E-11 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_09095 8bb42dd439b098ae9770a053ed1d9a5b 457 Pfam PF03109 ABC1 family 128 232 4.3E-26 T 18-10-2018 IPR004147 UbiB domain RU84_05905 d32d47761daf7c1c1f719b3d2bd11953 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 36.812 T 18-10-2018 IPR005583 Peroxide stress protein YaaA RU84_05905 d32d47761daf7c1c1f719b3d2bd11953 257 Pfam PF03883 Peroxide stress protein YaaA 1 243 5.8E-90 T 18-10-2018 IPR005583 Peroxide stress protein YaaA RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 Gene3D G3DSA:2.40.110.10 136 251 7.0E-42 T 18-10-2018 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 251 399 8.1E-31 T 18-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 Gene3D G3DSA:1.20.140.10 252 406 7.4E-34 T 18-10-2018 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 SUPERFAMILY SSF56645 22 264 3.53E-63 T 18-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 SUPERFAMILY SSF47203 250 404 2.09E-38 T 18-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 239 4.0E-18 T 18-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 Gene3D G3DSA:1.10.540.10 1 135 6.0E-51 T 18-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 RU84_08005 1bea47b54b80b39f69df2645f3a27003 413 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 132 4.6E-15 T 18-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 RU84_06575 725eb08aad4ebb081da59b71f0281561 251 Pfam PF06271 RDD family 88 245 2.6E-22 T 18-10-2018 IPR010432 RDD RU84_06575 725eb08aad4ebb081da59b71f0281561 251 Pfam PF14237 Domain of unknown function (DUF4339) 4 46 9.9E-16 T 18-10-2018 IPR025640 Domain of unknown function DUF4339 Reactome: R-HSA-6798695 RU84_02490 c834f9527a312ed4050f9f0956055942 322 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 319 3.2E-118 T 18-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 RU84_02490 c834f9527a312ed4050f9f0956055942 322 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 322 32.762 T 18-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 RU84_02490 c834f9527a312ed4050f9f0956055942 322 Gene3D G3DSA:3.40.718.10 2 322 1.3E-114 T 18-10-2018 RU84_02490 c834f9527a312ed4050f9f0956055942 322 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 29 316 6.0E-101 T 18-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 RU84_02490 c834f9527a312ed4050f9f0956055942 322 SUPERFAMILY SSF53659 4 320 1.49E-99 T 18-10-2018 RU84_10400 1b09794ffaa56d5024f58dec5a88a256 533 SUPERFAMILY SSF52096 22 270 9.79E-72 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10400 1b09794ffaa56d5024f58dec5a88a256 533 Gene3D G3DSA:3.90.226.10 272 533 9.1E-102 T 18-10-2018 RU84_10400 1b09794ffaa56d5024f58dec5a88a256 533 Pfam PF01039 Carboxyl transferase domain 48 524 1.4E-152 T 18-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 RU84_10400 1b09794ffaa56d5024f58dec5a88a256 533 SUPERFAMILY SSF52096 237 515 1.8E-86 T 18-10-2018 IPR029045 ClpP/crotonase-like domain superfamily RU84_10400 1b09794ffaa56d5024f58dec5a88a256 533 Gene3D G3DSA:3.90.226.10 1 271 3.2E-98 T 18-10-2018 RU84_07690 b2efc5b5d19971ab877835fe71930f59 141 Pfam PF11042 Protein of unknown function (DUF2750) 36 128 3.2E-16 T 18-10-2018 IPR021284 Protein of unknown function DUF2750 RU84_14425 c79d07b7d1a231461eaa677b21d8fd04 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 185 8.9E-29 T 18-10-2018 RU84_14425 c79d07b7d1a231461eaa677b21d8fd04 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 177 5.3E-9 T 18-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 RU84_14425 c79d07b7d1a231461eaa677b21d8fd04 224 Gene3D G3DSA:3.40.50.1000 6 204 5.6E-60 T 18-10-2018 IPR023214 HAD superfamily RU84_14425 c79d07b7d1a231461eaa677b21d8fd04 224 SUPERFAMILY SSF56784 1 216 2.8E-54 T 18-10-2018 IPR036412 HAD-like superfamily RU84_14425 c79d07b7d1a231461eaa677b21d8fd04 224 Gene3D G3DSA:1.10.150.240 17 84 5.6E-60 T 18-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 RU84_07485 fd93f30420ce2ee473642fbe565fa309 167 Gene3D G3DSA:3.30.910.20 15 167 2.7E-24 T 18-10-2018 IPR024930 Skp domain superfamily RU84_07485 fd93f30420ce2ee473642fbe565fa309 167 SMART SM00935 10 164 4.1E-32 T 18-10-2018 IPR005632 Chaperone protein Skp GO:0051082 RU84_07485 fd93f30420ce2ee473642fbe565fa309 167 Pfam PF03938 Outer membrane protein (OmpH-like) 9 162 4.0E-22 T 18-10-2018 IPR005632 Chaperone protein Skp GO:0051082 RU84_07485 fd93f30420ce2ee473642fbe565fa309 167 SUPERFAMILY SSF111384 22 164 7.19E-24 T 18-10-2018 RU84_03065 55ef742071c1ddc524c30795efb8a403 237 Gene3D G3DSA:3.20.20.190 2 228 8.1E-52 T 18-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RU84_03065 55ef742071c1ddc524c30795efb8a403 237 SUPERFAMILY SSF51695 1 236 1.18E-49 T 18-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 RU84_03065 55ef742071c1ddc524c30795efb8a403 237 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 231 2.8E-29 T 18-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 RU84_08010 708e213f31c04645fb23b4230365395a 373 Gene3D G3DSA:3.30.200.20 15 116 3.5E-27 T 18-10-2018 RU84_08010 708e213f31c04645fb23b4230365395a 373 Pfam PF01636 Phosphotransferase enzyme family 38 265 4.0E-40 T 18-10-2018 IPR002575 Aminoglycoside phosphotransferase RU84_08010 708e213f31c04645fb23b4230365395a 373 SUPERFAMILY SSF56112 15 342 2.17E-59 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_08010 708e213f31c04645fb23b4230365395a 373 Gene3D G3DSA:3.90.1200.10 122 354 7.4E-63 T 18-10-2018 RU84_18970 9d6721b78b895d77d9ca39869c566008 231 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 9 230 1.6E-83 T 18-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail RU84_18970 9d6721b78b895d77d9ca39869c566008 231 Pfam PF05100 Phage minor tail protein L 27 231 3.1E-73 T 18-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail RU84_13805 57ba3bd4cf130b21a1c5af79ca6c09cb 240 SUPERFAMILY SSF63848 134 230 5.1E-26 T 18-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 RU84_13805 57ba3bd4cf130b21a1c5af79ca6c09cb 240 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 136 231 1.3E-25 T 18-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 RU84_13805 57ba3bd4cf130b21a1c5af79ca6c09cb 240 Gene3D G3DSA:2.160.20.70 129 239 6.5E-26 T 18-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 RU84_13805 57ba3bd4cf130b21a1c5af79ca6c09cb 240 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 231 6.4E-38 T 18-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 RU84_13805 57ba3bd4cf130b21a1c5af79ca6c09cb 240 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 3 239 19.505 T 18-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 RU84_03225 e35a1a523c931c221808e9f783139af3 117 Gene3D G3DSA:1.10.3730.20 12 115 5.6E-16 T 18-10-2018 RU84_03225 e35a1a523c931c221808e9f783139af3 117 SUPERFAMILY SSF103481 13 113 1.96E-12 T 18-10-2018 RU84_03225 e35a1a523c931c221808e9f783139af3 117 Pfam PF00893 Small Multidrug Resistance protein 13 102 1.6E-11 T 18-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 RU84_12985 1d766559bd704129c54c1cafa77c4821 173 Pfam PF07883 Cupin domain 79 148 2.4E-11 T 18-10-2018 IPR013096 Cupin 2, conserved barrel RU84_12985 1d766559bd704129c54c1cafa77c4821 173 SUPERFAMILY SSF51182 44 167 6.54E-23 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_12985 1d766559bd704129c54c1cafa77c4821 173 Gene3D G3DSA:2.60.120.10 41 173 6.5E-20 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_10165 95c710cf4fc5321c7951f50f39a94cbe 229 Pfam PF04172 LrgB-like family 12 224 1.4E-65 T 18-10-2018 IPR007300 CidB/LrgB family RU84_04915 621408d73aa85b35f25be58f3f5dd5fb 416 Pfam PF13641 Glycosyltransferase like family 2 52 278 1.6E-35 T 18-10-2018 RU84_04915 621408d73aa85b35f25be58f3f5dd5fb 416 SUPERFAMILY SSF53448 42 317 1.5E-58 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_04915 621408d73aa85b35f25be58f3f5dd5fb 416 Gene3D G3DSA:3.90.550.10 29 269 1.1E-46 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_14035 c137e6b9a237baa9ea2ee8fa39aa7a24 168 Pfam PF08875 Domain of unknown function (DUF1833) 10 121 1.4E-10 T 18-10-2018 IPR014974 Domain of unknown function DUF1833 RU84_10590 6b0fd587ebcf92124dba91024795f744 198 Pfam PF02525 Flavodoxin-like fold 3 194 9.5E-40 T 18-10-2018 IPR003680 Flavodoxin-like fold RU84_10590 6b0fd587ebcf92124dba91024795f744 198 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 197 27.152 T 18-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 RU84_10590 6b0fd587ebcf92124dba91024795f744 198 Gene3D G3DSA:3.40.50.360 2 197 3.7E-49 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_10590 6b0fd587ebcf92124dba91024795f744 198 SUPERFAMILY SSF52218 1 196 8.23E-48 T 18-10-2018 IPR029039 Flavoprotein-like superfamily RU84_16560 71272116e71ea71d678f6389a5058f00 401 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 163 191 - T 18-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 RU84_16560 71272116e71ea71d678f6389a5058f00 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 401 1.9E-30 T 18-10-2018 IPR003004 GspF/PilC family RU84_16560 71272116e71ea71d678f6389a5058f00 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 1.9E-30 T 18-10-2018 IPR003004 GspF/PilC family RU84_16560 71272116e71ea71d678f6389a5058f00 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 366 380 1.9E-30 T 18-10-2018 IPR003004 GspF/PilC family RU84_16560 71272116e71ea71d678f6389a5058f00 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 1.9E-30 T 18-10-2018 IPR003004 GspF/PilC family RU84_16560 71272116e71ea71d678f6389a5058f00 401 Gene3D G3DSA:1.20.81.30 55 170 2.5E-27 T 18-10-2018 RU84_16560 71272116e71ea71d678f6389a5058f00 401 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 401 1.2E-144 T 18-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 RU84_16560 71272116e71ea71d678f6389a5058f00 401 Pfam PF00482 Type II secretion system (T2SS), protein F 271 393 3.6E-29 T 18-10-2018 IPR018076 Type II secretion system F domain RU84_16560 71272116e71ea71d678f6389a5058f00 401 Pfam PF00482 Type II secretion system (T2SS), protein F 70 191 8.9E-29 T 18-10-2018 IPR018076 Type II secretion system F domain RU84_16560 71272116e71ea71d678f6389a5058f00 401 Gene3D G3DSA:1.20.81.30 254 363 2.0E-26 T 18-10-2018 RU84_00370 d6834caf0df5d74d68ce49863c0b4874 370 Pfam PF01757 Acyltransferase family 4 349 1.3E-30 T 18-10-2018 IPR002656 Acyltransferase 3 GO:0016747 RU84_02935 73142ca38a274e83528b9b371141a3e6 295 SUPERFAMILY SSF53756 1 239 6.12E-5 T 18-10-2018 RU84_02935 73142ca38a274e83528b9b371141a3e6 295 Pfam PF06258 Mitochondrial fission ELM1 11 292 5.5E-56 T 18-10-2018 IPR009367 Mitochondrial fission protein ELM1-like RU84_03885 d45cc25f8b05c94c31b9dfbe3bb37f4b 95 Gene3D G3DSA:3.30.70.260 8 95 2.8E-22 T 18-10-2018 RU84_03885 d45cc25f8b05c94c31b9dfbe3bb37f4b 95 SUPERFAMILY SSF117991 10 95 2.88E-20 T 18-10-2018 IPR027471 YbeD-like domain superfamily RU84_03885 d45cc25f8b05c94c31b9dfbe3bb37f4b 95 Pfam PF04359 Protein of unknown function (DUF493) 13 94 1.1E-23 T 18-10-2018 IPR007454 Uncharacterised protein family UPF0250 RU84_10415 361f206354f5bf8909595e0fce54426d 300 Gene3D G3DSA:3.20.20.70 1 298 2.1E-125 T 18-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 RU84_10415 361f206354f5bf8909595e0fce54426d 300 Pfam PF00682 HMGL-like 5 277 1.7E-52 T 18-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 RU84_10415 361f206354f5bf8909595e0fce54426d 300 SUPERFAMILY SSF51569 2 290 2.75E-69 T 18-10-2018 RU84_07415 8230503e443174c35f0fd4c5775525ab 160 SUPERFAMILY SSF69765 4 159 7.72E-66 T 18-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RU84_07415 8230503e443174c35f0fd4c5775525ab 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 35.657 T 18-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RU84_07415 8230503e443174c35f0fd4c5775525ab 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 6.8E-67 T 18-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RU84_07415 8230503e443174c35f0fd4c5775525ab 160 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 39 54 - T 18-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RU84_07415 8230503e443174c35f0fd4c5775525ab 160 Gene3D G3DSA:3.30.1330.50 2 160 5.3E-68 T 18-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RU84_07415 8230503e443174c35f0fd4c5775525ab 160 Pfam PF02542 YgbB family 5 158 2.8E-66 T 18-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 RU84_11775 845a6a47388d3ad90d075c820436fe49 148 Pfam PF14085 Domain of unknown function (DUF4265) 20 127 1.2E-22 T 18-10-2018 IPR025361 Protein of unknown function DUF4265 RU84_01700 c2063b23167a6afd997eb26d36d9e7c0 155 Pfam PF10107 Endonuclease related to archaeal Holliday junction resolvase 35 150 5.5E-26 T 18-10-2018 IPR019287 Holliday junction resolvase-related domain RU84_05290 3ae8612a5b968fde7c6f354426fa5d47 228 Gene3D G3DSA:2.60.120.10 9 228 2.9E-77 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_05290 3ae8612a5b968fde7c6f354426fa5d47 228 Pfam PF02678 Pirin 13 119 2.9E-30 T 18-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 RU84_05290 3ae8612a5b968fde7c6f354426fa5d47 228 SUPERFAMILY SSF51182 4 227 2.51E-62 T 18-10-2018 IPR011051 RmlC-like cupin domain superfamily RU84_05290 3ae8612a5b968fde7c6f354426fa5d47 228 Gene3D G3DSA:2.60.120.10 12 135 2.9E-77 T 18-10-2018 IPR014710 RmlC-like jelly roll fold RU84_05290 3ae8612a5b968fde7c6f354426fa5d47 228 PIRSF PIRSF006232 1 226 2.9E-46 T 18-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 RU84_06380 9034cb2f1517c4960506e5a82f1d71c4 164 Pfam PF16036 Chalcone isomerase-like 57 163 4.1E-10 T 18-10-2018 IPR016087 Chalcone isomerase GO:0016872 RU84_16465 3321134cf75eac158ea2db9404126155 110 Pfam PF08888 HopJ type III effector protein 3 107 8.1E-43 T 18-10-2018 IPR014984 HopJ type III effector protein RU84_16465 3321134cf75eac158ea2db9404126155 110 Gene3D G3DSA:3.20.160.10 1 110 1.7E-45 T 18-10-2018 IPR038604 Type III effector HopJ superfamily RU84_11360 7271032e79940c6c55d7ad388d9d6694 71 Pfam PF13619 KTSC domain 6 56 5.0E-8 T 18-10-2018 IPR025309 KTSC domain RU84_02975 db7b82e79588c167fd4de05bd434a2e7 339 SUPERFAMILY SSF53448 3 238 2.81E-46 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_02975 db7b82e79588c167fd4de05bd434a2e7 339 Gene3D G3DSA:3.90.550.10 1 271 5.8E-51 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_02975 db7b82e79588c167fd4de05bd434a2e7 339 Pfam PF00535 Glycosyl transferase family 2 4 124 4.5E-26 T 18-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 RU84_00050 32ddf677c7e037638456eb84db9adb47 334 Gene3D G3DSA:3.40.190.170 47 243 6.0E-11 T 18-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 Pfam PF00375 Sodium:dicarboxylate symporter family 10 393 4.1E-63 T 18-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 SUPERFAMILY SSF118215 10 393 8.5E-89 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 Gene3D G3DSA:1.10.3860.10 2 398 6.2E-71 T 18-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 400 34.11 T 18-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 PRINTS PR00173 Glutamate-aspartate symporter signature 283 309 1.2E-14 T 18-10-2018 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 PRINTS PR00173 Glutamate-aspartate symporter signature 181 200 1.2E-14 T 18-10-2018 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 PRINTS PR00173 Glutamate-aspartate symporter signature 8 28 1.2E-14 T 18-10-2018 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 PRINTS PR00173 Glutamate-aspartate symporter signature 318 337 1.2E-14 T 18-10-2018 RU84_09510 2b1e77f2954055d49c1833c8d904eda4 400 PRINTS PR00173 Glutamate-aspartate symporter signature 345 365 1.2E-14 T 18-10-2018 RU84_19220 9b2992d3e11f65741b8325846faf0415 229 SUPERFAMILY SSF52540 10 226 4.7E-39 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_19220 9b2992d3e11f65741b8325846faf0415 229 Gene3D G3DSA:3.40.50.300 9 224 3.4E-49 T 18-10-2018 RU84_19220 9b2992d3e11f65741b8325846faf0415 229 Pfam PF13614 AAA domain 68 140 1.2E-6 T 18-10-2018 IPR025669 AAA domain RU84_19220 9b2992d3e11f65741b8325846faf0415 229 Pfam PF13614 AAA domain 9 53 6.5E-16 T 18-10-2018 IPR025669 AAA domain RU84_19220 9b2992d3e11f65741b8325846faf0415 229 PIRSF PIRSF009320 9 229 6.2E-41 T 18-10-2018 RU84_08475 0fce064fdb481725c088eeb7de897f29 255 Gene3D G3DSA:1.10.10.10 165 239 1.3E-23 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_08475 0fce064fdb481725c088eeb7de897f29 255 Gene3D G3DSA:3.90.79.10 21 164 2.0E-34 T 18-10-2018 RU84_08475 0fce064fdb481725c088eeb7de897f29 255 Pfam PF00293 NUDIX domain 25 148 7.4E-11 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_08475 0fce064fdb481725c088eeb7de897f29 255 SUPERFAMILY SSF46785 164 234 5.44E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08475 0fce064fdb481725c088eeb7de897f29 255 SUPERFAMILY SSF55811 17 159 1.03E-28 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_00360 4d6ad83d3e4bfc074a65b494fb77064f 227 Gene3D G3DSA:3.30.1380.10 79 216 5.6E-7 T 18-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_00360 4d6ad83d3e4bfc074a65b494fb77064f 227 Pfam PF08291 Peptidase M15 103 180 8.0E-9 T 18-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 RU84_00360 4d6ad83d3e4bfc074a65b494fb77064f 227 SUPERFAMILY SSF55166 81 220 2.51E-16 T 18-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 RU84_16710 ea73120338ba1eb027d06a8d8a790fe6 134 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 11 96 3.1E-25 T 18-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 RU84_16710 ea73120338ba1eb027d06a8d8a790fe6 134 Pfam PF03334 Na+/H+ antiporter subunit 12 91 6.7E-25 T 18-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 1.1E-5 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.1E-5 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 4.2E-10 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 4.2E-10 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 PIRSF PIRSF000171 1 561 4.9E-231 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 Pfam PF00890 FAD binding domain 9 378 2.6E-32 T 18-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 SUPERFAMILY SSF51905 3 403 7.08E-59 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 SUPERFAMILY SSF46977 428 552 2.22E-36 T 18-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 Gene3D G3DSA:3.50.50.90 328 556 3.8E-52 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 Gene3D G3DSA:3.50.50.90 1 282 3.5E-75 T 18-10-2018 RU84_08710 a06c5c97c6724e086ecd0eaad0648fff 577 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 545 7.2E-13 T 18-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 RU84_17585 68ce00e78b84ff080af15e7ccb44e336 279 Gene3D G3DSA:3.40.50.1980 173 276 3.1E-9 T 18-10-2018 RU84_17585 68ce00e78b84ff080af15e7ccb44e336 279 Gene3D G3DSA:3.40.50.1980 22 172 5.5E-23 T 18-10-2018 RU84_17585 68ce00e78b84ff080af15e7ccb44e336 279 SUPERFAMILY SSF53807 22 265 2.35E-39 T 18-10-2018 RU84_17585 68ce00e78b84ff080af15e7ccb44e336 279 Pfam PF01297 Zinc-uptake complex component A periplasmic 23 219 3.0E-24 T 18-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 RU84_04090 40ebd9e79dad6708e8bcac6699df309c 587 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 47 136 9.3E-31 T 18-10-2018 IPR032093 Phospholipase D, N-terminal RU84_04090 40ebd9e79dad6708e8bcac6699df309c 587 Pfam PF09423 PhoD-like phosphatase 146 550 2.2E-122 T 18-10-2018 IPR018946 Alkaline phosphatase D-related RU84_04090 40ebd9e79dad6708e8bcac6699df309c 587 Gene3D G3DSA:2.60.40.380 39 139 1.7E-34 T 18-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 RU84_04090 40ebd9e79dad6708e8bcac6699df309c 587 SUPERFAMILY SSF56300 138 564 1.71E-35 T 18-10-2018 RU84_08255 e839e41f5fd8d222c047ab6f32b298a6 153 Gene3D G3DSA:3.10.129.10 3 151 3.6E-45 T 18-10-2018 RU84_08255 e839e41f5fd8d222c047ab6f32b298a6 153 SUPERFAMILY SSF54637 8 149 2.21E-36 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_08255 e839e41f5fd8d222c047ab6f32b298a6 153 Pfam PF01575 MaoC like domain 15 122 6.7E-26 T 18-10-2018 IPR002539 MaoC-like dehydratase domain RU84_11955 7d7b93c5ace2739b9bade65303cf0936 196 Pfam PF05656 Protein of unknown function (DUF805) 95 194 1.6E-26 T 18-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 RU84_09770 0303cd8734f0dea08365ca040507f1e3 247 PIRSF PIRSF039085 1 245 4.2E-100 T 18-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 RU84_09770 0303cd8734f0dea08365ca040507f1e3 247 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 18-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 RU84_09770 0303cd8734f0dea08365ca040507f1e3 247 Gene3D G3DSA:3.40.50.300 3 243 7.2E-69 T 18-10-2018 RU84_09770 0303cd8734f0dea08365ca040507f1e3 247 Pfam PF00005 ABC transporter 20 167 1.8E-31 T 18-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 RU84_09770 0303cd8734f0dea08365ca040507f1e3 247 SMART SM00382 28 215 5.4E-11 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_09770 0303cd8734f0dea08365ca040507f1e3 247 SUPERFAMILY SSF52540 3 230 6.78E-72 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_02880 186c13fdfb0932823ac14cffa4f0261f 116 Pfam PF16931 Putative phage holin 1 114 3.3E-15 T 18-10-2018 IPR032637 Putative phage holin-like RU84_04935 00318c4a9815df69bc3da8dc64cf1b4f 160 Gene3D G3DSA:3.10.50.40 4 154 1.0E-57 T 18-10-2018 RU84_04935 00318c4a9815df69bc3da8dc64cf1b4f 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 4.3E-15 T 18-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain RU84_04935 00318c4a9815df69bc3da8dc64cf1b4f 160 SUPERFAMILY SSF54534 4 140 9.62E-39 T 18-10-2018 RU84_04935 00318c4a9815df69bc3da8dc64cf1b4f 160 Gene3D G3DSA:2.40.10.330 71 121 1.0E-57 T 18-10-2018 RU84_12425 0cdaea7bf91394a4828f28c89d6561a8 156 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 100 5.3E-38 T 18-10-2018 IPR018738 Protein of unknown function DUF2280 RU84_04195 5eec93ba7c0dda394f6010a7c3d923f6 287 Pfam PF01464 Transglycosylase SLT domain 93 198 6.0E-31 T 18-10-2018 IPR008258 Transglycosylase SLT domain 1 RU84_04195 5eec93ba7c0dda394f6010a7c3d923f6 287 Gene3D G3DSA:1.10.530.10 50 216 1.2E-51 T 18-10-2018 RU84_04195 5eec93ba7c0dda394f6010a7c3d923f6 287 SUPERFAMILY SSF53955 86 211 8.44E-50 T 18-10-2018 IPR023346 Lysozyme-like domain superfamily RU84_18660 1b91c63a0bb7bf6ba9a3abfee0bbec16 159 Pfam PF07220 Protein of unknown function (DUF1420) 13 131 7.0E-4 T 18-10-2018 IPR010818 Protein of unknown function DUF1420 RU84_05220 9f6e8d0d62206d2f4f031d3c90b1420f 321 Gene3D G3DSA:1.20.1530.20 2 319 8.8E-30 T 18-10-2018 IPR038770 Sodium/solute symporter superfamily RU84_05220 9f6e8d0d62206d2f4f031d3c90b1420f 321 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 317 5.2E-91 T 18-10-2018 IPR016833 Putative sodium bile acid cotransporter RU84_05220 9f6e8d0d62206d2f4f031d3c90b1420f 321 PIRSF PIRSF026166 1 321 7.7E-122 T 18-10-2018 IPR016833 Putative sodium bile acid cotransporter RU84_06810 2b08b446ec20d87d6b594b521ac615b3 102 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 2 91 1.5E-17 T 18-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ RU84_06810 2b08b446ec20d87d6b594b521ac615b3 102 Pfam PF04221 RelB antitoxin 5 71 4.6E-13 T 18-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ RU84_06810 2b08b446ec20d87d6b594b521ac615b3 102 Gene3D G3DSA:1.10.1220.10 2 51 2.4E-14 T 18-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 RU84_04795 b6694c717b4003f7357d28c69ab39339 136 Gene3D G3DSA:2.170.150.70 1 114 7.5E-15 T 18-10-2018 RU84_04795 b6694c717b4003f7357d28c69ab39339 136 SUPERFAMILY SSF51316 2 126 9.94E-34 T 18-10-2018 IPR011057 Mss4-like superfamily RU84_04795 b6694c717b4003f7357d28c69ab39339 136 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 23 109 5.5E-14 T 18-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 RU84_02675 b6d6b6b5d75c35ffeaf2b1d4fcc2abc8 109 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 101 1.6E-25 T 18-10-2018 IPR003849 Preprotein translocase YajC RU84_02675 b6d6b6b5d75c35ffeaf2b1d4fcc2abc8 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 41 59 2.4E-12 T 18-10-2018 IPR003849 Preprotein translocase YajC RU84_02675 b6d6b6b5d75c35ffeaf2b1d4fcc2abc8 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 2.4E-12 T 18-10-2018 IPR003849 Preprotein translocase YajC RU84_02675 b6d6b6b5d75c35ffeaf2b1d4fcc2abc8 109 Pfam PF02699 Preprotein translocase subunit 24 97 2.4E-26 T 18-10-2018 IPR003849 Preprotein translocase YajC RU84_02675 b6d6b6b5d75c35ffeaf2b1d4fcc2abc8 109 SMART SM01323 19 101 1.8E-36 T 18-10-2018 IPR003849 Preprotein translocase YajC RU84_12740 b2b34426de0b2bdb4e949bac4e2b3a02 182 Pfam PF09998 Uncharacterized protein conserved in bacteria (DUF2239) 6 174 3.1E-54 T 18-10-2018 IPR018715 Protein of unknown function DUF2239 RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 Gene3D G3DSA:3.40.190.10 107 308 1.1E-43 T 18-10-2018 RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 SUPERFAMILY SSF46785 20 102 4.67E-17 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 Gene3D G3DSA:3.40.190.10 181 282 1.1E-43 T 18-10-2018 RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 Pfam PF03466 LysR substrate binding domain 104 311 3.2E-31 T 18-10-2018 IPR005119 LysR, substrate-binding RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 21 79 1.2E-13 T 18-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 SUPERFAMILY SSF53850 105 316 4.34E-33 T 18-10-2018 RU84_01015 5a8d4f4bc5dd6f39d289e24d7a450447 324 Gene3D G3DSA:1.10.10.10 19 105 2.2E-21 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_19100 c3f65f949a594abbc103e4d518be41ef 204 Pfam PF00239 Resolvase, N terminal domain 9 143 1.1E-33 T 18-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RU84_19100 c3f65f949a594abbc103e4d518be41ef 204 SUPERFAMILY SSF53041 9 142 5.36E-34 T 18-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 RU84_19100 c3f65f949a594abbc103e4d518be41ef 204 SUPERFAMILY SSF46689 148 192 6.57E-5 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_19100 c3f65f949a594abbc103e4d518be41ef 204 ProSitePatterns PS00397 Site-specific recombinases active site. 11 19 - T 18-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 RU84_19100 c3f65f949a594abbc103e4d518be41ef 204 Gene3D G3DSA:3.40.50.1390 8 133 2.6E-33 T 18-10-2018 RU84_19100 c3f65f949a594abbc103e4d518be41ef 204 SMART SM00857 8 146 1.8E-41 T 18-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 RU84_13200 7a0a126106f26492f7fefe2e0a657229 142 Pfam PF05488 PAAR motif 48 117 2.2E-11 T 18-10-2018 IPR008727 PAAR motif RU84_13200 7a0a126106f26492f7fefe2e0a657229 142 Gene3D G3DSA:2.60.200.60 44 125 5.2E-7 T 18-10-2018 RU84_07235 f91423889a0d670464866a0c9ba3754e 190 SUPERFAMILY SSF48498 78 165 1.16E-7 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_07235 f91423889a0d670464866a0c9ba3754e 190 SUPERFAMILY SSF46689 3 69 1.9E-14 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_07235 f91423889a0d670464866a0c9ba3754e 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 4.5E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07235 f91423889a0d670464866a0c9ba3754e 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.5E-7 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_07235 f91423889a0d670464866a0c9ba3754e 190 Gene3D G3DSA:1.10.357.10 1 185 1.3E-35 T 18-10-2018 RU84_07235 f91423889a0d670464866a0c9ba3754e 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 6.5E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_04565 b736a253f30067ff011c35987ec0cd15 232 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 9 227 39.011 T 18-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 RU84_04565 b736a253f30067ff011c35987ec0cd15 232 TIGRFAM TIGR02796 tolQ: protein TolQ 11 222 3.3E-83 T 18-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 RU84_04565 b736a253f30067ff011c35987ec0cd15 232 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 207 2.2E-38 T 18-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RU84_07055 257271ee0481912abaf030083d50f66f 141 Gene3D G3DSA:2.60.120.380 24 136 2.9E-24 T 18-10-2018 RU84_09025 a16da1a9b38441f83ec8e6292aad1e2a 206 Gene3D G3DSA:3.40.630.30 7 186 4.7E-43 T 18-10-2018 RU84_09025 a16da1a9b38441f83ec8e6292aad1e2a 206 SUPERFAMILY SSF55729 17 184 5.82E-42 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_09025 a16da1a9b38441f83ec8e6292aad1e2a 206 Pfam PF13523 Acetyltransferase (GNAT) domain 29 169 5.2E-36 T 18-10-2018 RU84_09025 a16da1a9b38441f83ec8e6292aad1e2a 206 SMART SM01006 24 71 3.4E-14 T 18-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain RU84_07170 fca7ec6e0106d5a022af44ca639c84ac 742 Gene3D G3DSA:3.40.720.10 306 525 4.8E-49 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_07170 fca7ec6e0106d5a022af44ca639c84ac 742 Gene3D G3DSA:3.40.720.10 35 208 2.4E-30 T 18-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 RU84_07170 fca7ec6e0106d5a022af44ca639c84ac 742 Pfam PF04185 Phosphoesterase family 46 476 3.1E-102 T 18-10-2018 IPR007312 Phosphoesterase GO:0016788 RU84_07170 fca7ec6e0106d5a022af44ca639c84ac 742 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 3 741 4.8E-286 T 18-10-2018 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RU84_07170 fca7ec6e0106d5a022af44ca639c84ac 742 Pfam PF05506 Domain of unknown function (DUF756) 548 635 2.9E-23 T 18-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RU84_07170 fca7ec6e0106d5a022af44ca639c84ac 742 Pfam PF05506 Domain of unknown function (DUF756) 646 728 1.6E-21 T 18-10-2018 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3|MetaCyc: PWY-7782|MetaCyc: PWY-7783 RU84_16695 c5db89a612a2d80c6079149e2d3c7ae7 603 Pfam PF00361 Proton-conducting membrane transporter 143 431 1.2E-40 T 18-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16695 c5db89a612a2d80c6079149e2d3c7ae7 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 394 420 7.0E-9 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16695 c5db89a612a2d80c6079149e2d3c7ae7 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 178 202 7.0E-9 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16695 c5db89a612a2d80c6079149e2d3c7ae7 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 341 360 7.0E-9 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16695 c5db89a612a2d80c6079149e2d3c7ae7 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 7.0E-9 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_16695 c5db89a612a2d80c6079149e2d3c7ae7 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 148 167 7.0E-9 T 18-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 RU84_17135 0186558f9c8b54502dbc5c291c87ed06 208 SUPERFAMILY SSF55811 17 199 1.76E-41 T 18-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 RU84_17135 0186558f9c8b54502dbc5c291c87ed06 208 ProSitePatterns PS00893 Nudix box signature. 96 117 - T 18-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 RU84_17135 0186558f9c8b54502dbc5c291c87ed06 208 Pfam PF00293 NUDIX domain 55 188 3.6E-12 T 18-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 RU84_17135 0186558f9c8b54502dbc5c291c87ed06 208 Gene3D G3DSA:3.90.79.10 4 205 1.1E-53 T 18-10-2018 RU84_17135 0186558f9c8b54502dbc5c291c87ed06 208 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 13 196 8.5E-42 T 18-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 RU84_14415 8ac63b36ec9a11728b2c9fcf5c5be47c 593 Pfam PF14351 Domain of unknown function (DUF4401) 286 580 1.5E-11 T 18-10-2018 IPR025513 Domain of unknown function DUF4401 RU84_14415 8ac63b36ec9a11728b2c9fcf5c5be47c 593 Pfam PF09925 Predicted membrane protein (DUF2157) 7 115 7.4E-14 T 18-10-2018 IPR018677 Domain of unknown function DUF2157 RU84_01190 5f700626f7f05dbab4fd91d093cb3979 300 SUPERFAMILY SSF103481 188 284 9.15E-10 T 18-10-2018 RU84_01190 5f700626f7f05dbab4fd91d093cb3979 300 SUPERFAMILY SSF103481 46 144 9.02E-13 T 18-10-2018 RU84_01190 5f700626f7f05dbab4fd91d093cb3979 300 Pfam PF00892 EamA-like transporter family 14 141 2.6E-16 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_01190 5f700626f7f05dbab4fd91d093cb3979 300 Pfam PF00892 EamA-like transporter family 152 283 8.4E-12 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_09890 403d4b50bbac04c0db38576a60b05509 210 Pfam PF01810 LysE type translocator 14 208 1.1E-17 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_02605 2ff49eb6ba6e1dc50657e9f4f2c8a1b4 140 Pfam PF03061 Thioesterase superfamily 27 99 5.3E-16 T 18-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 RU84_02605 2ff49eb6ba6e1dc50657e9f4f2c8a1b4 140 SUPERFAMILY SSF54637 8 130 9.46E-33 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_02605 2ff49eb6ba6e1dc50657e9f4f2c8a1b4 140 Gene3D G3DSA:3.10.129.10 1 140 5.4E-37 T 18-10-2018 RU84_19255 f1414e8c7d9c19a3b68462fb9ca9c62d 157 Gene3D G3DSA:1.10.472.120 16 148 1.3E-7 T 18-10-2018 RU84_04390 d9b1e74fe006252da6413041921414b8 264 SUPERFAMILY SSF88713 1 261 2.45E-54 T 18-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 RU84_04390 d9b1e74fe006252da6413041921414b8 264 Gene3D G3DSA:3.20.20.370 2 263 1.2E-31 T 18-10-2018 RU84_04390 d9b1e74fe006252da6413041921414b8 264 Pfam PF04794 YdjC-like protein 4 250 1.1E-41 T 18-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like RU84_17500 9f6dfab07af50920c71480343cd3a483 376 SUPERFAMILY SSF102405 89 295 3.82E-41 T 18-10-2018 RU84_17500 9f6dfab07af50920c71480343cd3a483 376 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 81 295 2.9E-72 T 18-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RU84_17500 9f6dfab07af50920c71480343cd3a483 376 Gene3D G3DSA:3.40.50.450 3 297 4.2E-92 T 18-10-2018 RU84_17500 9f6dfab07af50920c71480343cd3a483 376 Pfam PF02481 DNA recombination-mediator protein A 86 285 1.3E-73 T 18-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 RU84_10070 5066eb051fc31b6e5250923c2b3133bb 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 4 323 8.9E-97 T 18-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RU84_10070 5066eb051fc31b6e5250923c2b3133bb 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 4 328 4.6E-47 T 18-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RU84_15605 d7cfdc8bd9f6f2460448f688fca1741e 126 Gene3D G3DSA:2.60.40.1220 30 126 5.4E-21 T 18-10-2018 RU84_15605 d7cfdc8bd9f6f2460448f688fca1741e 126 SUPERFAMILY SSF81296 29 123 6.58E-21 T 18-10-2018 IPR014756 Immunoglobulin E-set RU84_15605 d7cfdc8bd9f6f2460448f688fca1741e 126 Pfam PF04234 CopC domain 30 122 3.8E-21 T 18-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 RU84_00320 32f900540f65e57516f54cc1bd3e518d 447 TIGRFAM TIGR00797 matE: MATE efflux family protein 10 420 6.6E-50 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_00320 32f900540f65e57516f54cc1bd3e518d 447 Pfam PF01554 MatE 237 390 1.7E-17 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_00320 32f900540f65e57516f54cc1bd3e518d 447 Pfam PF01554 MatE 10 169 1.7E-17 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_00320 32f900540f65e57516f54cc1bd3e518d 447 PIRSF PIRSF006603 1 445 1.2E-52 T 18-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 RU84_01240 09f0c294f70d1cf1efb042bf90ce2529 143 Pfam PF00583 Acetyltransferase (GNAT) family 15 124 6.2E-20 T 18-10-2018 IPR000182 GNAT domain RU84_01240 09f0c294f70d1cf1efb042bf90ce2529 143 SUPERFAMILY SSF55729 1 129 9.47E-31 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_01240 09f0c294f70d1cf1efb042bf90ce2529 143 Gene3D G3DSA:3.40.630.30 3 142 2.0E-40 T 18-10-2018 RU84_09855 ca9c04fda33a3f5d552a50c08423f952 246 Pfam PF03591 AzlC protein 24 164 7.6E-33 T 18-10-2018 IPR011606 Branched-chain amino acid transport, permease RU84_18165 08ee58d65cf4635a6f9e4003495aaf3e 265 Gene3D G3DSA:1.10.3720.10 56 258 5.9E-28 T 18-10-2018 IPR035906 MetI-like superfamily RU84_18165 08ee58d65cf4635a6f9e4003495aaf3e 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 254 7.6E-29 T 18-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 RU84_18165 08ee58d65cf4635a6f9e4003495aaf3e 265 SUPERFAMILY SSF161098 63 245 5.63E-35 T 18-10-2018 IPR035906 MetI-like superfamily RU84_16090 7a7dd46fa87a67841b4c201b10778245 206 Pfam PF01618 MotA/TolQ/ExbB proton channel family 57 172 1.4E-32 T 18-10-2018 IPR002898 MotA/TolQ/ExbB proton channel RU84_02865 bd6021df183fd5e729ad9c8d893cf8a7 175 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 128 6.1E-37 T 18-10-2018 IPR009678 Bacteriophage tail completion protein R RU84_08925 87ba330378c51bacbb07d71c6ff672c3 289 Pfam PF10977 Protein of unknown function (DUF2797) 47 285 2.4E-90 T 18-10-2018 IPR021246 Protein of unknown function DUF2797 RU84_02805 97cbad2f389faa9aa63f96a51002c4b7 146 PIRSF PIRSF029208 1 146 2.3E-51 T 18-10-2018 IPR016912 Bacteriophage P2, GpU RU84_02805 97cbad2f389faa9aa63f96a51002c4b7 146 Pfam PF06995 Phage P2 GpU 6 124 2.0E-40 T 18-10-2018 IPR009734 Myoviridae, GpU RU84_15010 d1409e7f5a1fe2493448dce7027b5521 251 SUPERFAMILY SSF56925 89 250 5.49E-5 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_15010 d1409e7f5a1fe2493448dce7027b5521 251 Pfam PF05275 Copper resistance protein B precursor (CopB) 43 251 9.9E-46 T 18-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 RU84_13145 81941b3478fe42e3604416fefb19e608 235 Pfam PF06912 Protein of unknown function (DUF1275) 21 216 5.9E-31 T 18-10-2018 IPR010699 Protein of unknown function DUF1275 RU84_17970 4b707d6e1f09e81086ad69cfd6e8c64e 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 267 7.5E-104 T 18-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 RU84_17970 4b707d6e1f09e81086ad69cfd6e8c64e 291 Pfam PF00483 Nucleotidyl transferase 5 264 8.7E-22 T 18-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 RU84_17970 4b707d6e1f09e81086ad69cfd6e8c64e 291 SUPERFAMILY SSF53448 3 279 3.83E-55 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_17970 4b707d6e1f09e81086ad69cfd6e8c64e 291 Gene3D G3DSA:3.90.550.10 1 290 9.4E-79 T 18-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases RU84_01500 e322396a9b82a3c961e4cce7b4806b4b 186 Gene3D G3DSA:3.10.310.50 35 182 9.1E-41 T 18-10-2018 RU84_01500 e322396a9b82a3c961e4cce7b4806b4b 186 Pfam PF04536 TPM domain 39 161 4.6E-16 T 18-10-2018 IPR007621 TPM domain RU84_07695 d0f31544f30bca5c065500d70792de0b 77 SUPERFAMILY SSF81901 18 74 1.57E-7 T 18-10-2018 RU84_07695 d0f31544f30bca5c065500d70792de0b 77 Gene3D G3DSA:1.25.40.10 2 77 2.6E-8 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_07765 34bdca3f660b4621f8aeaebb4bc83ea7 698 Pfam PF00593 TonB dependent receptor 229 697 8.5E-59 T 18-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel RU84_07765 34bdca3f660b4621f8aeaebb4bc83ea7 698 SUPERFAMILY SSF56935 23 698 3.83E-131 T 18-10-2018 RU84_07765 34bdca3f660b4621f8aeaebb4bc83ea7 698 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 156 9.3E-22 T 18-10-2018 IPR012910 TonB-dependent receptor, plug domain RU84_07765 34bdca3f660b4621f8aeaebb4bc83ea7 698 Gene3D G3DSA:2.170.130.10 45 166 2.9E-35 T 18-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily RU84_07765 34bdca3f660b4621f8aeaebb4bc83ea7 698 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 698 4.0E-105 T 18-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 RU84_07765 34bdca3f660b4621f8aeaebb4bc83ea7 698 Gene3D G3DSA:2.40.170.20 167 698 7.6E-118 T 18-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily RU84_16945 e7336614b2a100b308182430a4b28b21 118 Pfam PF13441 YMGG-like Gly-zipper 74 115 4.0E-7 T 18-10-2018 IPR027367 YMGG-like Gly-zipper RU84_01355 2019df32e270f514f388e8824e9b9cac 286 Gene3D G3DSA:3.40.50.1820 122 283 2.2E-7 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_01355 2019df32e270f514f388e8824e9b9cac 286 SUPERFAMILY SSF53474 146 254 1.45E-9 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_01980 01a4490b0a61e9192eb608dbbe2ee531 145 Pfam PF02082 Transcriptional regulator 1 81 6.2E-19 T 18-10-2018 IPR000944 Transcription regulator Rrf2-type RU84_01980 01a4490b0a61e9192eb608dbbe2ee531 145 Gene3D G3DSA:1.10.10.10 1 142 1.3E-26 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_01980 01a4490b0a61e9192eb608dbbe2ee531 145 SUPERFAMILY SSF46785 2 131 2.98E-30 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_01980 01a4490b0a61e9192eb608dbbe2ee531 145 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 4.4E-25 T 18-10-2018 IPR000944 Transcription regulator Rrf2-type RU84_09405 24a22842cad5f9f8d5bfd382f68c41fd 326 Gene3D G3DSA:3.40.50.300 7 171 3.4E-45 T 18-10-2018 RU84_09405 24a22842cad5f9f8d5bfd382f68c41fd 326 SUPERFAMILY SSF52540 10 211 1.31E-37 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_09405 24a22842cad5f9f8d5bfd382f68c41fd 326 Pfam PF13177 DNA polymerase III, delta subunit 27 173 3.4E-36 T 18-10-2018 RU84_05320 9e1edb8db2ebb11d4e224fd474cccd84 313 SUPERFAMILY SSF81345 4 310 2.22E-64 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_05320 9e1edb8db2ebb11d4e224fd474cccd84 313 Pfam PF01032 FecCD transport family 9 310 3.0E-63 T 18-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 RU84_05320 9e1edb8db2ebb11d4e224fd474cccd84 313 Gene3D G3DSA:1.10.3470.10 1 313 2.4E-61 T 18-10-2018 IPR037294 ABC transporter, BtuC-like RU84_06555 f659c677cf974c12fb95763dc98fb530 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 6.1E-38 T 18-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 RU84_06555 f659c677cf974c12fb95763dc98fb530 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 92 5.2E-17 T 18-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 RU84_12855 548d09adc02c7d4b17cc80121a404842 205 Gene3D G3DSA:1.20.1540.10 3 193 2.4E-26 T 18-10-2018 IPR035952 Rhomboid-like superfamily RU84_12855 548d09adc02c7d4b17cc80121a404842 205 Pfam PF01694 Rhomboid family 41 189 4.5E-24 T 18-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 RU84_12855 548d09adc02c7d4b17cc80121a404842 205 SUPERFAMILY SSF144091 7 191 3.4E-34 T 18-10-2018 RU84_03785 71f99722f1956316c72b8609cc7a0005 484 Gene3D G3DSA:2.20.200.10 103 352 3.6E-133 T 18-10-2018 RU84_03785 71f99722f1956316c72b8609cc7a0005 484 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 463 8.5E-109 T 18-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 RU84_03785 71f99722f1956316c72b8609cc7a0005 484 SUPERFAMILY SSF56954 10 464 2.35E-108 T 18-10-2018 RU84_03785 71f99722f1956316c72b8609cc7a0005 484 Pfam PF02321 Outer membrane efflux protein 66 252 1.3E-30 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_03785 71f99722f1956316c72b8609cc7a0005 484 Pfam PF02321 Outer membrane efflux protein 281 461 3.3E-32 T 18-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 RU84_03785 71f99722f1956316c72b8609cc7a0005 484 Gene3D G3DSA:1.20.1600.10 56 463 3.6E-133 T 18-10-2018 RU84_02335 4da4a2b9630796d32ca4c7747a02528a 277 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 86 108 - T 18-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RU84_02335 4da4a2b9630796d32ca4c7747a02528a 277 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 52 216 6.1E-39 T 18-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 RU84_02335 4da4a2b9630796d32ca4c7747a02528a 277 Gene3D G3DSA:1.20.120.1760 35 190 1.4E-12 T 18-10-2018 RU84_02335 4da4a2b9630796d32ca4c7747a02528a 277 Pfam PF01066 CDP-alcohol phosphatidyltransferase 45 108 4.6E-13 T 18-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 RU84_17840 da0d4c88ebadb13684640ef5f76b8506 381 Pfam PF07786 Protein of unknown function (DUF1624) 9 221 6.7E-20 T 18-10-2018 IPR012429 Domain of unknown function DUF1624 Reactome: R-HSA-2024096|Reactome: R-HSA-2206291|Reactome: R-HSA-6798695 RU84_11575 4c1b4001971db64d92c035cd4819a6bb 207 Gene3D G3DSA:1.10.357.10 11 198 3.4E-20 T 18-10-2018 RU84_11575 4c1b4001971db64d92c035cd4819a6bb 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 30 60 - T 18-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site RU84_11575 4c1b4001971db64d92c035cd4819a6bb 207 SUPERFAMILY SSF46689 4 81 1.3E-16 T 18-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 RU84_11575 4c1b4001971db64d92c035cd4819a6bb 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 2.1E-13 T 18-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 RU84_02250 4d5dbba84a7c360de46a4b5a078555e8 304 SUPERFAMILY SSF103481 45 145 5.23E-11 T 18-10-2018 RU84_02250 4d5dbba84a7c360de46a4b5a078555e8 304 Pfam PF00892 EamA-like transporter family 13 143 7.9E-14 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_02250 4d5dbba84a7c360de46a4b5a078555e8 304 Pfam PF00892 EamA-like transporter family 160 295 7.1E-17 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_02250 4d5dbba84a7c360de46a4b5a078555e8 304 SUPERFAMILY SSF103481 200 299 2.48E-12 T 18-10-2018 RU84_11545 6a7b4955962e3c85bac54e639f7c2e35 439 Pfam PF00860 Permease family 27 398 6.6E-56 T 18-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 RU84_11545 6a7b4955962e3c85bac54e639f7c2e35 439 PIRSF PIRSF005353 1 438 8.6E-185 T 18-10-2018 IPR026033 Purine permease PbuG-like RU84_16085 5de0bcbb16240e94334c887769fcd376 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 133 4.9E-28 T 18-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 RU84_16085 5de0bcbb16240e94334c887769fcd376 134 Gene3D G3DSA:3.30.420.270 61 130 7.7E-13 T 18-10-2018 RU84_00680 0df300e9f7a9db6994bf3d04231036a5 397 SMART SM00267 220 388 6.3E-60 T 18-10-2018 IPR000160 GGDEF domain RU84_00680 0df300e9f7a9db6994bf3d04231036a5 397 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 228 387 6.2E-47 T 18-10-2018 IPR000160 GGDEF domain RU84_00680 0df300e9f7a9db6994bf3d04231036a5 397 SUPERFAMILY SSF55073 236 389 1.88E-46 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_00680 0df300e9f7a9db6994bf3d04231036a5 397 Pfam PF00990 Diguanylate cyclase, GGDEF domain 232 384 6.7E-47 T 18-10-2018 IPR000160 GGDEF domain RU84_00680 0df300e9f7a9db6994bf3d04231036a5 397 Gene3D G3DSA:3.30.70.270 217 390 1.5E-53 T 18-10-2018 RU84_12795 dfa0cdd81b24d675cfc46fa888392cd4 196 Pfam PF05036 Sporulation related domain 115 173 3.9E-6 T 18-10-2018 IPR007730 Sporulation-like domain GO:0042834 RU84_12795 dfa0cdd81b24d675cfc46fa888392cd4 196 SUPERFAMILY SSF110997 114 187 2.62E-10 T 18-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RU84_11950 58510d69bee1695a9478c29f9e1a9782 89 Pfam PF06067 Domain of unknown function (DUF932) 8 69 1.3E-12 T 18-10-2018 IPR026325 Protein of unknown function DUF932 RU84_12815 af542f43acb0cb2f9ea301c0a2d10ff3 819 Pfam PF02687 FtsX-like permease family 721 806 5.8E-8 T 18-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 RU84_12815 af542f43acb0cb2f9ea301c0a2d10ff3 819 PRINTS PR00173 Glutamate-aspartate symporter signature 304 324 2.4E-5 T 18-10-2018 RU84_12815 af542f43acb0cb2f9ea301c0a2d10ff3 819 PRINTS PR00173 Glutamate-aspartate symporter signature 401 426 2.4E-5 T 18-10-2018 RU84_12815 af542f43acb0cb2f9ea301c0a2d10ff3 819 PRINTS PR00173 Glutamate-aspartate symporter signature 687 706 2.4E-5 T 18-10-2018 RU84_15175 217af97f8c14dbb735b97231485e89fa 299 Pfam PF04333 MlaA lipoprotein 76 266 1.4E-62 T 18-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RU84_15175 217af97f8c14dbb735b97231485e89fa 299 PRINTS PR01805 VacJ lipoprotein signature 180 197 2.3E-18 T 18-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RU84_15175 217af97f8c14dbb735b97231485e89fa 299 PRINTS PR01805 VacJ lipoprotein signature 94 110 2.3E-18 T 18-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RU84_15175 217af97f8c14dbb735b97231485e89fa 299 PRINTS PR01805 VacJ lipoprotein signature 77 90 2.3E-18 T 18-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RU84_15175 217af97f8c14dbb735b97231485e89fa 299 PRINTS PR01805 VacJ lipoprotein signature 145 162 2.3E-18 T 18-10-2018 IPR007428 MlaA lipoprotein GO:0016020 RU84_00690 bfa14b093fb90981ada0b6a855c1753d 145 Gene3D G3DSA:2.40.128.520 23 145 4.0E-19 T 18-10-2018 RU84_00690 bfa14b093fb90981ada0b6a855c1753d 145 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 27 143 1.3E-26 T 18-10-2018 IPR019223 Domain of unknown function DUF2147 RU84_05900 b8d5e365ceff8c7234ee79f6840ed66e 210 Gene3D G3DSA:3.40.50.1820 1 209 1.9E-41 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_05900 b8d5e365ceff8c7234ee79f6840ed66e 210 SUPERFAMILY SSF53474 3 207 1.1E-34 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_13510 2e5860c072841e325ad52f32d7d96c4a 254 Pfam PF01695 IstB-like ATP binding protein 60 226 4.0E-18 T 18-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 RU84_13510 2e5860c072841e325ad52f32d7d96c4a 254 SMART SM00382 105 239 4.9E-6 T 18-10-2018 IPR003593 AAA+ ATPase domain RU84_13510 2e5860c072841e325ad52f32d7d96c4a 254 SUPERFAMILY SSF52540 86 232 2.47E-18 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_13510 2e5860c072841e325ad52f32d7d96c4a 254 Gene3D G3DSA:3.40.50.300 34 234 6.2E-36 T 18-10-2018 RU84_02915 e23466f15c0d138ed3fdb0279a9d6ec0 335 PIRSF PIRSF018494 1 331 1.4E-134 T 18-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria RU84_02915 e23466f15c0d138ed3fdb0279a9d6ec0 335 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 35 310 1.4E-66 T 18-10-2018 IPR006430 Phage portal protein PBSX family RU84_02915 e23466f15c0d138ed3fdb0279a9d6ec0 335 Pfam PF04860 Phage portal protein 47 312 1.0E-15 T 18-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein RU84_12785 959a09c2a8101999525c1cdab1f2877b 314 Pfam PF00561 alpha/beta hydrolase fold 40 163 3.0E-18 T 18-10-2018 IPR000073 Alpha/beta hydrolase fold-1 RU84_12785 959a09c2a8101999525c1cdab1f2877b 314 SUPERFAMILY SSF53474 6 311 1.24E-61 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_12785 959a09c2a8101999525c1cdab1f2877b 314 Gene3D G3DSA:3.40.50.1820 23 309 3.9E-59 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00255 4c39905db794433f88a2c6273cdf286f 120 Gene3D G3DSA:3.30.428.10 1 119 2.9E-26 T 18-10-2018 IPR036265 HIT-like superfamily RU84_00255 4c39905db794433f88a2c6273cdf286f 120 SUPERFAMILY SSF54197 3 116 2.94E-28 T 18-10-2018 IPR036265 HIT-like superfamily RU84_00255 4c39905db794433f88a2c6273cdf286f 120 Pfam PF01230 HIT domain 16 105 2.4E-12 T 18-10-2018 IPR001310 Histidine triad (HIT) protein RU84_07120 d014c7a8b3d9dccffea8bd53f374367f 144 Pfam PF05232 Chlorhexidine efflux transporter 70 131 5.8E-23 T 18-10-2018 IPR007896 Chlorhexidine efflux transporter RU84_07120 d014c7a8b3d9dccffea8bd53f374367f 144 Pfam PF05232 Chlorhexidine efflux transporter 5 64 1.7E-16 T 18-10-2018 IPR007896 Chlorhexidine efflux transporter RU84_13995 ee5697e8676d1dd87fd360e6889f0e13 173 Pfam PF15956 Domain of unknown function (DUF4760) 30 162 2.8E-32 T 18-10-2018 IPR031876 Protein of unknown function DUF4760 RU84_05620 92b62845c8a4598594b19d228aa8290d 356 SUPERFAMILY SSF56925 125 356 6.54E-17 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_05620 92b62845c8a4598594b19d228aa8290d 356 Pfam PF03922 OmpW family 120 356 1.1E-18 T 18-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 RU84_07735 e0274118cb19493dbdd4971253796da9 381 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 364 9.9E-105 T 18-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RU84_07735 e0274118cb19493dbdd4971253796da9 381 PIRSF PIRSF000267 2 380 5.1E-120 T 18-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RU84_07735 e0274118cb19493dbdd4971253796da9 381 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 381 7.6E-150 T 18-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 RU84_18910 c56329a15d4e83a7b19ea0afb44bb28a 300 SUPERFAMILY SSF56563 10 295 1.31E-12 T 18-10-2018 RU84_02840 468acfc99e6dd4317fe1f52c96740316 201 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 4 140 5.2E-39 T 18-10-2018 IPR006521 Tail protein I RU84_02840 468acfc99e6dd4317fe1f52c96740316 201 Pfam PF09684 Phage tail protein (Tail_P2_I) 4 141 5.5E-41 T 18-10-2018 IPR006521 Tail protein I RU84_15960 1c44001ee34bf18c209a6c723d5c0279 238 Pfam PF11008 Protein of unknown function (DUF2846) 55 163 2.9E-25 T 18-10-2018 IPR022548 Domain of unknown function DUF2846 RU84_00850 780bfa39fdc603589036e6e00411dc97 235 Pfam PF04452 RNA methyltransferase 21 233 4.2E-44 T 18-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RU84_00850 780bfa39fdc603589036e6e00411dc97 235 SUPERFAMILY SSF75217 73 233 1.88E-34 T 18-10-2018 IPR029028 Alpha/beta knot methyltransferases RU84_00850 780bfa39fdc603589036e6e00411dc97 235 Gene3D G3DSA:3.40.1280.10 4 234 1.1E-29 T 18-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal RU84_00850 780bfa39fdc603589036e6e00411dc97 235 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 5 230 1.3E-30 T 18-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RU84_00850 780bfa39fdc603589036e6e00411dc97 235 PIRSF PIRSF015601 1 235 6.2E-45 T 18-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 RU84_03835 817fd71b5893b9d62268c811e2e56590 262 Gene3D G3DSA:3.90.640.20 169 257 2.7E-17 T 18-10-2018 IPR037126 PdaC/RsiV-like superfamily RU84_03835 817fd71b5893b9d62268c811e2e56590 262 Gene3D G3DSA:3.30.565.40 52 168 6.4E-13 T 18-10-2018 RU84_03835 817fd71b5893b9d62268c811e2e56590 262 Pfam PF11738 Protein of unknown function (DUF3298) 174 242 1.7E-9 T 18-10-2018 IPR021729 Domain of unknown function DUF3298 RU84_06400 9177476ff3f7da7e46d34c399aa1de3e 303 SUPERFAMILY SSF103481 189 290 1.26E-5 T 18-10-2018 RU84_06400 9177476ff3f7da7e46d34c399aa1de3e 303 Pfam PF00892 EamA-like transporter family 158 286 8.5E-13 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_06400 9177476ff3f7da7e46d34c399aa1de3e 303 SUPERFAMILY SSF103481 40 140 7.19E-6 T 18-10-2018 RU84_12955 fe2f6a924b03e1a6180286b93109475c 398 SUPERFAMILY SSF56935 38 369 5.04E-10 T 18-10-2018 RU84_18595 1184d734fd480ce9531211849a07621b 283 Gene3D G3DSA:3.30.1360.170 16 176 4.6E-15 T 18-10-2018 RU84_18595 1184d734fd480ce9531211849a07621b 283 SUPERFAMILY SSF69796 17 176 1.31E-16 T 18-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 RU84_18095 c6ebcc50fdc566ff968d5a33994c8049 382 Pfam PF00487 Fatty acid desaturase 75 341 4.6E-32 T 18-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RU84_12560 a8ebd43c05744e0c95c4600c9bbbb7b3 373 Pfam PF13479 AAA domain 18 202 9.5E-30 T 18-10-2018 RU84_08215 a22a4657d0c9c6dd8d26f970a571833f 182 Pfam PF02082 Transcriptional regulator 4 83 1.3E-24 T 18-10-2018 IPR000944 Transcription regulator Rrf2-type RU84_08215 a22a4657d0c9c6dd8d26f970a571833f 182 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 141 1.5E-30 T 18-10-2018 IPR000944 Transcription regulator Rrf2-type RU84_08215 a22a4657d0c9c6dd8d26f970a571833f 182 SUPERFAMILY SSF46785 4 144 1.77E-33 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_08215 a22a4657d0c9c6dd8d26f970a571833f 182 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 18-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site RU84_08215 a22a4657d0c9c6dd8d26f970a571833f 182 Gene3D G3DSA:1.10.10.10 2 148 2.1E-31 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_02390 7d9d8b5daf53d937654518158404b8aa 601 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 14 354 4.5E-124 T 18-10-2018 IPR010839 Acyclic terpene utilisation RU84_00325 6575a5c25001a27e3f347e3bc0055532 157 Pfam PF04463 Protein of unknown function (DUF523) 3 146 7.7E-40 T 18-10-2018 IPR007553 Domain of unknown function DUF523 RU84_00860 d3a93693ef2dc9647c7d3f4ded83e3af 191 Pfam PF05656 Protein of unknown function (DUF805) 20 138 1.9E-20 T 18-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 RU84_12155 8a34fb42d6f611554d0402bf068c11f7 287 SUPERFAMILY SSF53474 29 283 7.77E-41 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_12155 8a34fb42d6f611554d0402bf068c11f7 287 Pfam PF07859 alpha/beta hydrolase fold 71 151 7.6E-15 T 18-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 RU84_12155 8a34fb42d6f611554d0402bf068c11f7 287 Gene3D G3DSA:3.40.50.1820 8 274 2.9E-50 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07610 e057b7a14f73196b3710d4aec99f3ac5 154 Gene3D G3DSA:1.10.10.10 3 153 9.1E-27 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_07610 e057b7a14f73196b3710d4aec99f3ac5 154 Pfam PF01047 MarR family 51 102 1.3E-5 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_07610 e057b7a14f73196b3710d4aec99f3ac5 154 SMART SM00347 38 138 2.0E-12 T 18-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 RU84_07610 e057b7a14f73196b3710d4aec99f3ac5 154 SUPERFAMILY SSF46785 12 153 3.08E-27 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_01225 752b71d1c567921290d5ea687518a1aa 127 Pfam PF12568 Acetyltransferase (GNAT) domain 3 98 3.2E-11 T 18-10-2018 IPR000182 GNAT domain RU84_01225 752b71d1c567921290d5ea687518a1aa 127 Gene3D G3DSA:3.40.630.30 1 111 9.7E-17 T 18-10-2018 RU84_01225 752b71d1c567921290d5ea687518a1aa 127 SUPERFAMILY SSF55729 1 107 2.99E-12 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 Pfam PF00717 Peptidase S24-like 163 219 1.6E-6 T 18-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 SMART SM00530 10 65 2.2E-14 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 SUPERFAMILY SSF47413 3 71 1.26E-15 T 18-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 Pfam PF01381 Helix-turn-helix 11 65 1.3E-11 T 18-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 SUPERFAMILY SSF51306 155 231 5.06E-11 T 18-10-2018 IPR036286 LexA/Signal peptidase-like superfamily RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 Gene3D G3DSA:2.10.109.10 117 241 4.3E-8 T 18-10-2018 RU84_12530 ef818733f0e86f5c188648edb489eb2d 254 Gene3D G3DSA:1.10.260.40 3 69 5.4E-19 T 18-10-2018 RU84_01905 95c8576b0c77f6fb0095106655ae5065 226 Pfam PF02470 MlaD protein 38 164 4.9E-33 T 18-10-2018 IPR003399 Mce/MlaD RU84_14410 41734343e85df550f48e333f2e97de60 186 Pfam PF14345 GDYXXLXY protein 14 162 3.0E-17 T 18-10-2018 IPR025833 GDYXXLXY protein RU84_15475 1a5166828f5846c2c97405989181b6a3 376 Pfam PF14350 Beta protein 7 364 9.2E-59 T 18-10-2018 IPR025683 Protein beta RU84_14870 169c4131450d7eb3c5c134c4444d804f 328 PIRSF PIRSF034367 1 327 3.6E-199 T 18-10-2018 IPR015004 Protein of unknown function DUF1852 RU84_14870 169c4131450d7eb3c5c134c4444d804f 328 Pfam PF08908 Domain of unknown function (DUF1852) 1 323 2.0E-188 T 18-10-2018 IPR015004 Protein of unknown function DUF1852 RU84_08930 5551671f3c97536d0e90cbdc1255b91b 372 Pfam PF12698 ABC-2 family transporter protein 33 364 1.8E-44 T 18-10-2018 RU84_06950 4348f70f95719b4248c3d2bbeb801f7a 339 Pfam PF05229 Spore Coat Protein U domain 194 336 3.4E-27 T 18-10-2018 IPR007893 Spore coat protein U RU84_06950 4348f70f95719b4248c3d2bbeb801f7a 339 SMART SM00972 270 336 2.0E-21 T 18-10-2018 IPR007893 Spore coat protein U RU84_00765 9847ffa2e54765252e89ebdc1d66b6ee 230 SUPERFAMILY SSF51261 78 226 6.8E-54 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_00765 9847ffa2e54765252e89ebdc1d66b6ee 230 Gene3D G3DSA:2.70.70.10 74 229 4.5E-45 T 18-10-2018 IPR011055 Duplicated hybrid motif RU84_00765 9847ffa2e54765252e89ebdc1d66b6ee 230 Pfam PF01551 Peptidase family M23 128 222 7.9E-32 T 18-10-2018 IPR016047 Peptidase M23 RU84_17645 dffbd14e9fa8564a97dad3db007ab2b9 101 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 94 3.2E-35 T 18-10-2018 IPR024476 Protein of unknown function DUF3861 RU84_17645 dffbd14e9fa8564a97dad3db007ab2b9 101 Gene3D G3DSA:1.10.225.20 1 95 1.1E-32 T 18-10-2018 RU84_01640 0d3beec3cc153087763f90d67f68b772 292 SUPERFAMILY SSF103481 181 279 1.57E-9 T 18-10-2018 RU84_01640 0d3beec3cc153087763f90d67f68b772 292 Pfam PF00892 EamA-like transporter family 146 276 4.9E-14 T 18-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 RU84_02870 010a26d8c1e9ef08d96c8d82815eb79e 276 Gene3D G3DSA:1.10.101.10 1 79 6.0E-20 T 18-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 RU84_02870 010a26d8c1e9ef08d96c8d82815eb79e 276 Pfam PF01471 Putative peptidoglycan binding domain 9 69 7.7E-15 T 18-10-2018 IPR002477 Peptidoglycan binding-like RU84_02870 010a26d8c1e9ef08d96c8d82815eb79e 276 SUPERFAMILY SSF47090 2 69 2.38E-15 T 18-10-2018 IPR036365 PGBD-like superfamily RU84_02870 010a26d8c1e9ef08d96c8d82815eb79e 276 Pfam PF11860 N-acetylmuramidase 100 264 4.3E-50 T 18-10-2018 IPR024408 N-acetylmuramidase RU84_02795 84edb3cfbf85c9b7a52c5af0d64d591c 79 Pfam PF04606 Ogr/Delta-like zinc finger 9 44 3.3E-11 T 18-10-2018 IPR007684 Zinc finger, Ogr/Delta-type RU84_08175 60bafc8092a45c4084f24f5114085db3 298 SUPERFAMILY SSF160104 67 197 2.33E-8 T 18-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RU84_08175 60bafc8092a45c4084f24f5114085db3 298 Gene3D G3DSA:2.40.400.10 57 251 1.1E-7 T 18-10-2018 IPR023375 Acetoacetate decarboxylase domain superfamily KEGG: 00072+4.1.1.4|KEGG: 00640+4.1.1.4|MetaCyc: PWY-5451|MetaCyc: PWY-6588|MetaCyc: PWY-6876|MetaCyc: PWY-7466 RU84_17670 0d7a4abeec659664522db12b0d093530 145 Pfam PF07681 DoxX 23 100 3.8E-17 T 18-10-2018 IPR032808 DoxX family RU84_16940 faf5d5fa19a178cd9c5df027ce0c4d8d 165 SUPERFAMILY SSF54637 11 158 4.48E-22 T 18-10-2018 IPR029069 HotDog domain superfamily RU84_16940 faf5d5fa19a178cd9c5df027ce0c4d8d 165 Gene3D G3DSA:3.10.129.10 9 159 2.3E-30 T 18-10-2018 RU84_16940 faf5d5fa19a178cd9c5df027ce0c4d8d 165 Pfam PF14539 Domain of unknown function (DUF4442) 13 151 1.2E-17 T 18-10-2018 IPR027961 Protein of unknown function DUF4442 RU84_06895 624d1a4d454822130efa401e2760c74a 322 Gene3D G3DSA:3.40.50.1820 20 321 7.1E-42 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_06895 624d1a4d454822130efa401e2760c74a 322 Pfam PF12146 Serine aminopeptidase, S33 46 252 3.5E-19 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_06895 624d1a4d454822130efa401e2760c74a 322 SUPERFAMILY SSF53474 19 320 1.03E-29 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_06790 219a8d4efbdc318bbc2d65980aa3ed12 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 22 133 2.0E-39 T 18-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame RU84_06790 219a8d4efbdc318bbc2d65980aa3ed12 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 6 150 17.973 T 18-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame RU84_06790 219a8d4efbdc318bbc2d65980aa3ed12 150 Pfam PF04284 Protein of unknown function (DUF441) 10 148 5.0E-46 T 18-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame RU84_05050 3d4c1139c9838f6180928642c235d559 338 Pfam PF01594 AI-2E family transporter 15 329 1.0E-12 T 18-10-2018 IPR002549 Transmembrane protein TqsA-like RU84_09365 31f5a2663ce012b74370ccc0642ad052 198 Gene3D G3DSA:3.30.479.10 1 144 4.3E-23 T 18-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 RU84_09365 31f5a2663ce012b74370ccc0642ad052 198 SUPERFAMILY SSF55620 1 145 2.61E-31 T 18-10-2018 RU84_09365 31f5a2663ce012b74370ccc0642ad052 198 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 143 2.7E-26 T 18-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 RU84_01485 bf9f099a8a2c4f38c477de66e9aab335 295 Pfam PF10118 Predicted metal-dependent hydrolase 23 265 5.7E-76 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_01485 bf9f099a8a2c4f38c477de66e9aab335 295 PIRSF PIRSF007580 6 283 4.6E-69 T 18-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 RU84_14620 87bff171e0bfd74bc79b6547efbe90bc 188 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 24 176 3.1E-29 T 18-10-2018 IPR018639 Domain of unknown function DUF2062 RU84_02425 874f63233c28b2f821ac331d0924a787 186 SUPERFAMILY SSF52540 5 169 5.78E-19 T 18-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase RU84_02425 874f63233c28b2f821ac331d0924a787 186 Gene3D G3DSA:3.40.50.300 3 183 1.5E-19 T 18-10-2018 RU84_02425 874f63233c28b2f821ac331d0924a787 186 Pfam PF00071 Ras family 7 169 1.6E-5 T 18-10-2018 IPR001806 Small GTPase GO:0003924|GO:0005525 RU84_14455 98ba8649ef93f2dd0e970e36fffcaf69 61 SUPERFAMILY SSF57829 2 54 1.22E-17 T 18-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 RU84_14455 98ba8649ef93f2dd0e970e36fffcaf69 61 Pfam PF01783 Ribosomal L32p protein family 2 55 2.7E-20 T 18-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_14455 98ba8649ef93f2dd0e970e36fffcaf69 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.561 T 18-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_14455 98ba8649ef93f2dd0e970e36fffcaf69 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 53 5.0E-20 T 18-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 RU84_13815 92883ff1c61c4e66c57179b0ccb281d1 90 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 9 88 5.0E-20 T 18-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 RU84_13815 92883ff1c61c4e66c57179b0ccb281d1 90 Gene3D G3DSA:3.30.1070.10 21 88 8.9E-21 T 18-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 RU84_13815 92883ff1c61c4e66c57179b0ccb281d1 90 SUPERFAMILY SSF55229 37 89 3.27E-11 T 18-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 RU84_13815 92883ff1c61c4e66c57179b0ccb281d1 90 Pfam PF03776 Septum formation topological specificity factor MinE 17 87 4.7E-19 T 18-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 RU84_13815 92883ff1c61c4e66c57179b0ccb281d1 90 Hamap MF_00262 Cell division topological specificity factor [minE]. 4 90 15.573 T 18-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 RU84_02470 b72951800fcc5dd72c9554704c267764 142 PIRSF PIRSF005276 5 142 7.4E-54 T 18-10-2018 IPR007481 Stringent starvation protein B RU84_02470 b72951800fcc5dd72c9554704c267764 142 SUPERFAMILY SSF101738 7 116 9.03E-49 T 18-10-2018 IPR036760 SspB-like superfamily RU84_02470 b72951800fcc5dd72c9554704c267764 142 Gene3D G3DSA:2.30.30.220 4 133 5.7E-53 T 18-10-2018 IPR036760 SspB-like superfamily RU84_02470 b72951800fcc5dd72c9554704c267764 142 Pfam PF04386 Stringent starvation protein B 11 133 5.3E-37 T 18-10-2018 IPR007481 Stringent starvation protein B RU84_07535 3f98be8c00cde85e56c78333ed8f2f2b 119 Pfam PF05666 Fels-1 Prophage Protein-like 25 60 2.8E-14 T 18-10-2018 IPR008617 Uncharacterised protein family, YcgJ RU84_07535 3f98be8c00cde85e56c78333ed8f2f2b 119 Pfam PF05666 Fels-1 Prophage Protein-like 68 94 1.3E-9 T 18-10-2018 IPR008617 Uncharacterised protein family, YcgJ RU84_08450 345760c7d1a1bf66b336821b62eecf8e 163 Pfam PF00583 Acetyltransferase (GNAT) family 25 143 6.2E-16 T 18-10-2018 IPR000182 GNAT domain RU84_08450 345760c7d1a1bf66b336821b62eecf8e 163 Gene3D G3DSA:3.40.630.30 6 162 2.7E-25 T 18-10-2018 RU84_08450 345760c7d1a1bf66b336821b62eecf8e 163 SUPERFAMILY SSF55729 29 161 1.83E-23 T 18-10-2018 IPR016181 Acyl-CoA N-acyltransferase RU84_08905 35f4dce77bcf1b9de7b6cc0f4194d754 137 SUPERFAMILY SSF54197 1 137 1.39E-39 T 18-10-2018 IPR036265 HIT-like superfamily RU84_08905 35f4dce77bcf1b9de7b6cc0f4194d754 137 PRINTS PR00332 Histidine triad family signature 29 47 7.0E-18 T 18-10-2018 IPR001310 Histidine triad (HIT) protein RU84_08905 35f4dce77bcf1b9de7b6cc0f4194d754 137 PRINTS PR00332 Histidine triad family signature 96 106 7.0E-18 T 18-10-2018 IPR001310 Histidine triad (HIT) protein RU84_08905 35f4dce77bcf1b9de7b6cc0f4194d754 137 PRINTS PR00332 Histidine triad family signature 8 24 7.0E-18 T 18-10-2018 IPR001310 Histidine triad (HIT) protein RU84_08905 35f4dce77bcf1b9de7b6cc0f4194d754 137 Pfam PF01230 HIT domain 15 109 1.7E-26 T 18-10-2018 IPR001310 Histidine triad (HIT) protein RU84_08905 35f4dce77bcf1b9de7b6cc0f4194d754 137 Gene3D G3DSA:3.30.428.10 1 137 1.0E-37 T 18-10-2018 IPR036265 HIT-like superfamily RU84_17880 22ace9852e45eecae10b39c217c7502a 285 Pfam PF12686 Protein of unknown function (DUF3800) 25 192 2.2E-6 T 18-10-2018 IPR024524 Protein of unknown function DUF3800 RU84_09815 aee7c094b5fe9e70230317052b247822 277 SUPERFAMILY SSF53850 39 272 2.44E-63 T 18-10-2018 RU84_09815 aee7c094b5fe9e70230317052b247822 277 Gene3D G3DSA:3.40.190.10 119 224 1.9E-66 T 18-10-2018 RU84_09815 aee7c094b5fe9e70230317052b247822 277 Pfam PF03180 NLPA lipoprotein 39 270 2.7E-66 T 18-10-2018 IPR004872 Lipoprotein NlpA family RU84_09815 aee7c094b5fe9e70230317052b247822 277 Gene3D G3DSA:3.40.190.10 42 266 1.9E-66 T 18-10-2018 RU84_06230 496ae9c4db403818dd83309110bd465d 172 Pfam PF05229 Spore Coat Protein U domain 26 168 1.5E-27 T 18-10-2018 IPR007893 Spore coat protein U RU84_12290 a68bacd8820d9a8e38a8b737d1e0428e 168 Pfam PF08875 Domain of unknown function (DUF1833) 19 142 7.5E-8 T 18-10-2018 IPR014974 Domain of unknown function DUF1833 RU84_03425 1116faff8145c866fc46622fe5a62409 302 Pfam PF08907 Domain of unknown function (DUF1853) 23 253 6.4E-46 T 18-10-2018 IPR015003 Protein of unknown function DUF1853 RU84_05925 98d7899bdda727ef333311c8906adf77 121 Pfam PF04241 Protein of unknown function (DUF423) 16 102 1.8E-26 T 18-10-2018 IPR006696 Protein of unknown function DUF423 RU84_00605 feeb9bbbcf3d7f9383b91adb170780ee 447 Pfam PF07819 PGAP1-like protein 152 374 1.8E-33 T 18-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 RU84_00605 feeb9bbbcf3d7f9383b91adb170780ee 447 SUPERFAMILY SSF53474 155 372 6.33E-20 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_00605 feeb9bbbcf3d7f9383b91adb170780ee 447 Gene3D G3DSA:3.40.50.1820 157 415 2.0E-25 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_17075 00b2b5258741802813b94c72faf1d709 255 Gene3D G3DSA:3.40.50.10090 32 166 5.7E-43 T 18-10-2018 RU84_17075 00b2b5258741802813b94c72faf1d709 255 SUPERFAMILY SSF69618 5 248 1.29E-42 T 18-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_17075 00b2b5258741802813b94c72faf1d709 255 Gene3D G3DSA:3.40.50.10090 5 227 5.7E-43 T 18-10-2018 RU84_17075 00b2b5258741802813b94c72faf1d709 255 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 227 3.0E-31 T 18-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 RU84_07420 b3ed6b8850bb599c4c92aa841e7d571e 174 Gene3D G3DSA:3.90.190.10 3 155 3.0E-30 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_07420 b3ed6b8850bb599c4c92aa841e7d571e 174 SUPERFAMILY SSF52799 9 133 5.74E-15 T 18-10-2018 IPR029021 Protein-tyrosine phosphatase-like RU84_10170 8c8c2f78d642c7236a86065e62f62ce5 143 Pfam PF03788 LrgA family 29 121 2.8E-22 T 18-10-2018 IPR005538 LrgA/CidA family GO:0016021 RU84_04895 8ee26bc3aa45bf134762b53b4cd6deb3 406 Gene3D G3DSA:1.25.40.10 54 169 2.4E-8 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_04895 8ee26bc3aa45bf134762b53b4cd6deb3 406 SUPERFAMILY SSF48452 59 145 3.04E-8 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_15235 99b56aabbc054c386eba730292f4329e 189 Pfam PF02325 YGGT family 11 79 2.4E-5 T 18-10-2018 IPR003425 CCB3/YggT GO:0016020 RU84_15235 99b56aabbc054c386eba730292f4329e 189 Pfam PF02325 YGGT family 108 177 8.1E-16 T 18-10-2018 IPR003425 CCB3/YggT GO:0016020 RU84_12050 479adc1110c5c64710b9c611d4497927 88 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 42 80 1.3E-7 T 18-10-2018 IPR010260 DNA-binding transcriptional activator AlpA RU84_01690 6f0fed2b501707d09a97c8f37035255f 372 Pfam PF01594 AI-2E family transporter 12 344 1.2E-44 T 18-10-2018 IPR002549 Transmembrane protein TqsA-like RU84_00950 4a2fc6f1bc6660646ec6acbbcf59dc22 117 Pfam PF06993 Protein of unknown function (DUF1304) 8 114 4.0E-41 T 18-10-2018 IPR009732 Protein of unknown function DUF1304 RU84_00785 ca45456a18b756b80c265d94c98ea8ef 191 Pfam PF01169 Uncharacterized protein family UPF0016 107 181 1.7E-23 T 18-10-2018 IPR001727 Gdt1 family RU84_00785 ca45456a18b756b80c265d94c98ea8ef 191 Pfam PF01169 Uncharacterized protein family UPF0016 6 80 4.2E-19 T 18-10-2018 IPR001727 Gdt1 family RU84_11285 1e7c590080ad771fc286c2e59557792f 508 SUPERFAMILY SSF47240 9 506 3.18E-163 T 18-10-2018 IPR009078 Ferritin-like superfamily RU84_11285 1e7c590080ad771fc286c2e59557792f 508 Gene3D G3DSA:1.10.620.20 6 508 1.3E-217 T 18-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 RU84_11285 1e7c590080ad771fc286c2e59557792f 508 Pfam PF02332 Methane/Phenol/Toluene Hydroxylase 27 254 1.1E-68 T 18-10-2018 IPR003430 Methane/phenol/toluene hydroxylase GO:0006725|GO:0055114 RU84_11285 1e7c590080ad771fc286c2e59557792f 508 Pfam PF04945 YHS domain 422 456 1.1E-9 T 18-10-2018 IPR007029 YHS domain RU84_14655 57e333d7de60404a099a222fab0deb52 207 Pfam PF01810 LysE type translocator 18 204 2.0E-34 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_16860 03e62712ffd8b2f6157d285db413f5cc 176 Gene3D G3DSA:3.90.1720.10 58 174 2.0E-30 T 18-10-2018 RU84_05445 b452f4c2f6ed18129427d993e2fd7c35 327 Gene3D G3DSA:3.40.50.720 174 323 6.2E-33 T 18-10-2018 RU84_05445 b452f4c2f6ed18129427d993e2fd7c35 327 SUPERFAMILY SSF51735 175 264 1.65E-5 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_05445 b452f4c2f6ed18129427d993e2fd7c35 327 Pfam PF13478 XdhC Rossmann domain 175 319 1.1E-33 T 18-10-2018 IPR027051 XdhC Rossmann domain RU84_05445 b452f4c2f6ed18129427d993e2fd7c35 327 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 21 320 1.2E-87 T 18-10-2018 IPR014308 Xanthine dehydrogenase accessory protein XdhC RU84_05445 b452f4c2f6ed18129427d993e2fd7c35 327 Pfam PF02625 XdhC and CoxI family 17 82 3.5E-14 T 18-10-2018 IPR003777 XdhC- CoxI RU84_06910 7e350dc45e395d1e8a2c87a0d0ca8717 119 Gene3D G3DSA:3.30.429.10 1 119 2.1E-36 T 18-10-2018 IPR014347 Tautomerase/MIF superfamily RU84_06910 7e350dc45e395d1e8a2c87a0d0ca8717 119 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 89 7.8E-7 T 18-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 RU84_06910 7e350dc45e395d1e8a2c87a0d0ca8717 119 SUPERFAMILY SSF55331 2 118 1.07E-26 T 18-10-2018 IPR014347 Tautomerase/MIF superfamily RU84_05250 e92ff120a1341c556b3e308e1d0d6e3e 698 Pfam PF02554 Carbon starvation protein CstA 38 414 1.3E-169 T 18-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 RU84_05250 e92ff120a1341c556b3e308e1d0d6e3e 698 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 469 597 4.0E-32 T 18-10-2018 IPR025299 CstA, C-terminal domain RU84_13830 31bee23b89d157a0c8174f7fb0ed8947 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 201 2.9E-58 T 18-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 RU84_13830 31bee23b89d157a0c8174f7fb0ed8947 206 Pfam PF01810 LysE type translocator 15 203 3.0E-48 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_13830 31bee23b89d157a0c8174f7fb0ed8947 206 PIRSF PIRSF006324 1 206 8.3E-41 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_05035 085d3d9777c5fe4c321aba2e158f81c5 234 Gene3D G3DSA:1.10.1200.10 164 234 2.7E-10 T 18-10-2018 IPR036736 ACP-like superfamily RU84_16095 f05c7cebcaf4f974043fbe2679d51fe2 251 Gene3D G3DSA:3.30.1150.10 129 249 2.8E-12 T 18-10-2018 RU84_16095 f05c7cebcaf4f974043fbe2679d51fe2 251 SUPERFAMILY SSF74653 151 251 1.83E-14 T 18-10-2018 RU84_16095 f05c7cebcaf4f974043fbe2679d51fe2 251 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 186 247 6.0E-13 T 18-10-2018 IPR006260 TonB/TolA, C-terminal RU84_16095 f05c7cebcaf4f974043fbe2679d51fe2 251 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 189 247 2.6E-12 T 18-10-2018 IPR037682 TonB, C-terminal GO:0055085 RU84_13240 171db26ab7d766549f8784ca8d10267d 280 Pfam PF05488 PAAR motif 9 78 2.1E-19 T 18-10-2018 IPR008727 PAAR motif RU84_13240 171db26ab7d766549f8784ca8d10267d 280 Gene3D G3DSA:2.60.200.60 5 85 1.2E-11 T 18-10-2018 RU84_11920 54e230449d427d5d251d9af7a9a59009 358 Gene3D G3DSA:3.30.40.60 145 237 2.8E-5 T 18-10-2018 RU84_17290 22b446501b8514c8244b5309de6a5794 75 Pfam PF04380 Membrane fusogenic activity 5 69 6.9E-13 T 18-10-2018 IPR007475 Membrane fusogenic activity RU84_17605 3ae4b4b3cc0c7271da2234bbc66478d5 208 PIRSF PIRSF006324 1 206 2.1E-50 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_17605 3ae4b4b3cc0c7271da2234bbc66478d5 208 Pfam PF01810 LysE type translocator 16 201 4.7E-35 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_18685 121ef6cbc6edee71ceda5181f29d24ff 310 Pfam PF13737 Transposase DDE domain 22 130 2.7E-43 T 18-10-2018 IPR025668 Transposase DDE domain RU84_02175 4923535159d5abfb106c0e01dc14497f 731 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 311 721 9.4E-15 T 18-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit RU84_03535 c106014e28008bb268d129fd180aae52 355 Pfam PF06674 Protein of unknown function (DUF1176) 26 348 2.1E-94 T 18-10-2018 IPR009560 Protein of unknown function DUF1176 RU84_12415 fa4e721a6c4bac51b0cdc835288f5acb 483 Pfam PF13264 Domain of unknown function (DUF4055) 262 401 5.2E-34 T 18-10-2018 IPR025129 Domain of unknown function DUF4055 RU84_10045 64a78532da12b82473ccf8da102c8955 488 SUPERFAMILY SSF103473 18 474 1.83E-59 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10045 64a78532da12b82473ccf8da102c8955 488 Pfam PF00083 Sugar (and other) transporter 55 456 1.2E-38 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_10045 64a78532da12b82473ccf8da102c8955 488 Gene3D G3DSA:1.20.1250.20 33 464 3.5E-63 T 18-10-2018 RU84_10790 eb156e9477b169a1524767d44e890540 429 Pfam PF00083 Sugar (and other) transporter 12 425 1.0E-29 T 18-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 RU84_10790 eb156e9477b169a1524767d44e890540 429 Gene3D G3DSA:1.20.1250.20 6 429 1.4E-74 T 18-10-2018 RU84_10790 eb156e9477b169a1524767d44e890540 429 SUPERFAMILY SSF103473 5 425 7.32E-65 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_10790 eb156e9477b169a1524767d44e890540 429 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 18-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 RU84_06295 6d1135d112a73baa8b943dfaf2cdd9fa 202 Pfam PF04403 Paraquat-inducible protein A 45 197 2.8E-38 T 18-10-2018 IPR007498 Intermembrane transport protein PqiA-like RU84_06500 a664c71f8ba71461d764a69460e988f4 335 SUPERFAMILY SSF46785 14 56 1.52E-6 T 18-10-2018 IPR036390 Winged helix DNA-binding domain superfamily RU84_06500 a664c71f8ba71461d764a69460e988f4 335 Pfam PF13280 WYL domain 158 329 3.0E-24 T 18-10-2018 IPR026881 WYL domain RU84_15610 ad8e2673b20780fbf751a356c61e7314 293 Pfam PF05425 Copper resistance protein D 190 283 1.9E-13 T 18-10-2018 IPR008457 Copper resistance protein D GO:0016021 RU84_10020 1c35dcc3a84b0c3b9de86340ce44a1fc 293 SUPERFAMILY SSF51197 9 282 1.47E-90 T 18-10-2018 RU84_10020 1c35dcc3a84b0c3b9de86340ce44a1fc 293 Gene3D G3DSA:3.60.130.10 5 285 1.4E-91 T 18-10-2018 RU84_10020 1c35dcc3a84b0c3b9de86340ce44a1fc 293 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 12 274 2.0E-65 T 18-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 RU84_11220 1f984e7e66df3310d512e63dc3bce5dd 64 Pfam PF02609 Exonuclease VII small subunit 15 59 3.1E-5 T 18-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 RU84_01510 e9fba68dc80132fa2b7d0abe627ab7a7 436 Pfam PF04932 O-Antigen ligase 182 311 2.3E-12 T 18-10-2018 IPR007016 O-antigen ligase-related RU84_08305 3fce18a2cd9a4d6b9d96e6464a8a08bd 377 Pfam PF03922 OmpW family 138 377 8.9E-15 T 18-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 RU84_08305 3fce18a2cd9a4d6b9d96e6464a8a08bd 377 SUPERFAMILY SSF56925 146 377 1.18E-16 T 18-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel RU84_07205 ca5231a70271c850d0bb39c77490ea42 342 Gene3D G3DSA:3.40.50.1820 70 337 5.3E-39 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07205 ca5231a70271c850d0bb39c77490ea42 342 SUPERFAMILY SSF53474 71 326 3.15E-32 T 18-10-2018 IPR029058 Alpha/Beta hydrolase fold RU84_07205 ca5231a70271c850d0bb39c77490ea42 342 Pfam PF12146 Serine aminopeptidase, S33 83 318 9.5E-33 T 18-10-2018 IPR022742 Serine aminopeptidase, S33 RU84_01625 1b7f5ffd775de391a1d5aecdb88f1851 256 Pfam PF01925 Sulfite exporter TauE/SafE 10 247 2.1E-37 T 18-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RU84_16495 ff2030632ed349c1f58624e4b76950fc 214 Pfam PF00753 Metallo-beta-lactamase superfamily 11 193 6.9E-30 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_16495 ff2030632ed349c1f58624e4b76950fc 214 SMART SM00849 13 193 7.2E-41 T 18-10-2018 IPR001279 Metallo-beta-lactamase RU84_16495 ff2030632ed349c1f58624e4b76950fc 214 SUPERFAMILY SSF56281 3 209 4.6E-56 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_16495 ff2030632ed349c1f58624e4b76950fc 214 Gene3D G3DSA:3.60.15.10 2 210 3.6E-75 T 18-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like RU84_03220 53e381af57a720020ba9a3dcd2022d61 161 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 155 7.8E-31 T 18-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 RU84_03220 53e381af57a720020ba9a3dcd2022d61 161 PIRSF PIRSF030820 3 160 4.7E-32 T 18-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 RU84_14095 2f014e9ae4d398392043cf83e0cbf892 486 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 44 383 5.5E-64 T 18-10-2018 IPR006427 Phage portal protein, HK97 RU84_14095 2f014e9ae4d398392043cf83e0cbf892 486 Pfam PF04860 Phage portal protein 52 375 1.3E-61 T 18-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein RU84_03780 664a9d3c9112e2c17ba07d854baaa132 116 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 25.113 T 18-10-2018 IPR002765 Uncharacterised protein family UPF0145 RU84_03780 664a9d3c9112e2c17ba07d854baaa132 116 SUPERFAMILY SSF117782 1 105 4.45E-37 T 18-10-2018 IPR035439 UPF0145 domain superfamily RU84_03780 664a9d3c9112e2c17ba07d854baaa132 116 Pfam PF01906 Putative heavy-metal-binding 1 103 3.3E-38 T 18-10-2018 IPR002765 Uncharacterised protein family UPF0145 RU84_03780 664a9d3c9112e2c17ba07d854baaa132 116 Gene3D G3DSA:3.30.110.70 2 109 2.6E-32 T 18-10-2018 RU84_09485 aeb75a12311a81cb76e1b5afc6393bf1 127 Gene3D G3DSA:3.30.56.110 8 127 1.7E-50 T 18-10-2018 RU84_09485 aeb75a12311a81cb76e1b5afc6393bf1 127 Pfam PF09996 Uncharacterized protein conserved in bacteria (DUF2237) 13 126 2.2E-50 T 18-10-2018 IPR018714 Protein of unknown function DUF2237 RU84_03495 c0654eae940c81bf65cc15635e9cf827 234 SUPERFAMILY SSF55469 9 232 2.88E-46 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_03495 c0654eae940c81bf65cc15635e9cf827 234 Pfam PF00881 Nitroreductase family 13 209 4.4E-36 T 18-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 RU84_03495 c0654eae940c81bf65cc15635e9cf827 234 Gene3D G3DSA:3.40.109.10 2 230 9.6E-66 T 18-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 RU84_17520 d5a76030a1a0d1123d048337f19d6b37 404 Gene3D G3DSA:1.20.1250.20 14 392 5.6E-41 T 18-10-2018 RU84_17520 d5a76030a1a0d1123d048337f19d6b37 404 Pfam PF07690 Major Facilitator Superfamily 26 337 4.2E-30 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_17520 d5a76030a1a0d1123d048337f19d6b37 404 SUPERFAMILY SSF103473 10 393 5.36E-53 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_13250 34821742ffc55edf520588cf41e0111d 256 TIGRFAM TIGR02594 TIGR02594: TIGR02594 family protein 96 228 3.4E-48 T 18-10-2018 IPR013423 Conserved hypothetical protein CHP02594 RU84_00925 d536b38c8c241d2804f7cca370a62357 299 SUPERFAMILY SSF56935 135 299 5.49E-5 T 18-10-2018 RU84_00925 d536b38c8c241d2804f7cca370a62357 299 Pfam PF16956 Putative general bacterial porin 2 297 1.8E-18 T 18-10-2018 IPR031593 Putative general bacterial porin RU84_06240 4e18d8733c6e8a993cab83b6f8e026f9 260 SUPERFAMILY SSF49354 15 144 2.88E-25 T 18-10-2018 IPR008962 PapD-like superfamily RU84_06240 4e18d8733c6e8a993cab83b6f8e026f9 260 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 31 140 6.9E-20 T 18-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 RU84_06240 4e18d8733c6e8a993cab83b6f8e026f9 260 Gene3D G3DSA:2.60.40.10 17 144 1.2E-11 T 18-10-2018 IPR013783 Immunoglobulin-like fold RU84_03060 be3796caa12a0e402d8ae904e3f23c0f 176 Pfam PF03724 META domain 67 172 2.1E-14 T 18-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ RU84_03060 be3796caa12a0e402d8ae904e3f23c0f 176 Gene3D G3DSA:2.40.128.270 64 175 6.4E-9 T 18-10-2018 IPR038670 HslJ-like superfamily RU84_06350 e3d6b39f5d2549d547c427a5dd5e7820 263 Pfam PF07103 Protein of unknown function (DUF1365) 11 256 1.6E-50 T 18-10-2018 IPR010775 Protein of unknown function DUF1365 RU84_02905 e478ab0c77b0389bfaebbde684cf18eb 267 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 5 260 4.0E-84 T 18-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 RU84_01065 829e86240bf094f79ab3a85c825b93f1 247 SUPERFAMILY SSF48452 27 110 6.13E-5 T 18-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 RU84_06610 8e8e3a73fb8b58a4f7dfe759500b4f0b 187 SUPERFAMILY SSF51905 20 186 4.96E-11 T 18-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily RU84_17470 2fe29892b48947176dafa0384ff5f844 404 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 122 351 1.1E-32 T 18-10-2018 IPR018713 Domain of unknown function DUF2236 RU84_00985 40f40bf0b429f6cda2ca58698ed95ff0 231 Pfam PF03591 AzlC protein 30 165 1.0E-27 T 18-10-2018 IPR011606 Branched-chain amino acid transport, permease RU84_01805 3f60f58a79dc2f6fc486d77f369a5a4d 242 SUPERFAMILY SSF55073 44 207 1.88E-11 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_01805 3f60f58a79dc2f6fc486d77f369a5a4d 242 Gene3D G3DSA:3.30.70.1230 49 227 1.1E-9 T 18-10-2018 IPR029787 Nucleotide cyclase RU84_03990 516f24ca72d9a29e22ef39caa55dd260 551 SUPERFAMILY SSF48208 173 411 2.55E-16 T 18-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 RU84_03990 516f24ca72d9a29e22ef39caa55dd260 551 Gene3D G3DSA:1.50.10.10 178 429 3.3E-7 T 18-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 RU84_00760 ffa0e29d493ea1081e9c5d7ac9b2f314 146 Pfam PF05258 Protein of unknown function (DUF721) 26 95 2.6E-4 T 18-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 RU84_12480 2c89b5e8b7ed2bcfb01674633aac9b7d 133 SUPERFAMILY SSF52980 16 120 3.32E-6 T 18-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 RU84_12480 2c89b5e8b7ed2bcfb01674633aac9b7d 133 Gene3D G3DSA:3.40.960.10 28 132 2.8E-10 T 18-10-2018 RU84_12480 2c89b5e8b7ed2bcfb01674633aac9b7d 133 Pfam PF04480 Protein of unknown function (DUF559) 19 119 1.9E-7 T 18-10-2018 IPR007569 Protein of unknown function DUF559 RU84_17245 14c04242e4d51e24318461b6ed8afb11 135 SUPERFAMILY SSF102400 1 134 1.7E-31 T 18-10-2018 IPR036768 DNA polymerase III subunit chi superfamily RU84_17245 14c04242e4d51e24318461b6ed8afb11 135 Gene3D G3DSA:3.40.50.10110 1 134 6.0E-30 T 18-10-2018 IPR036768 DNA polymerase III subunit chi superfamily RU84_17245 14c04242e4d51e24318461b6ed8afb11 135 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 130 4.4E-29 T 18-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 RU84_11130 d5ccbd1eb33ad26094df245f37205bb6 197 Pfam PF13628 Domain of unknown function (DUF4142) 52 192 1.1E-22 T 18-10-2018 IPR025419 Domain of unknown function DUF4142 RU84_16900 4d1b7cd4d8b84b9245750a1e2251bf81 234 Gene3D G3DSA:3.40.30.10 1 207 9.7E-70 T 18-10-2018 RU84_16900 4d1b7cd4d8b84b9245750a1e2251bf81 234 Pfam PF01323 DSBA-like thioredoxin domain 2 203 3.0E-44 T 18-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 RU84_16900 4d1b7cd4d8b84b9245750a1e2251bf81 234 SUPERFAMILY SSF52833 1 206 2.11E-41 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_18330 4437e6cdbbc2a7cde264914100706edc 416 Pfam PF06772 Bacterial low temperature requirement A protein (LtrA) 49 382 9.7E-86 T 18-10-2018 IPR010640 Low temperature requirement A RU84_16195 1f076b430c3e2f4b816a93cf53c7e80c 210 PIRSF PIRSF006324 1 209 4.9E-45 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_16195 1f076b430c3e2f4b816a93cf53c7e80c 210 Pfam PF01810 LysE type translocator 16 207 3.3E-28 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_02995 5674d97f11578f3ca38b9cf6c0e061d9 254 Pfam PF13803 Domain of unknown function (DUF4184) 1 212 1.3E-42 T 18-10-2018 IPR025238 Protein of unknown function DUF4184 RU84_14460 cf43e9a820c266f3cf6b37e9d858684c 186 Pfam PF02620 Uncharacterized ACR, COG1399 64 181 3.5E-18 T 18-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD RU84_18610 4aa5629d45fa9495ed74b00010c65469 85 Gene3D G3DSA:1.20.5.340 4 67 9.0E-6 T 18-10-2018 RU84_16385 1fb6915a6d57fad56abb0a1d4358e5c7 153 Pfam PF04657 Putative inner membrane exporter, YdcZ 12 149 3.5E-44 T 18-10-2018 IPR006750 Putative inner membrane exporter, YdcZ RU84_13255 7a247804fac90b81bb04e5bc0e1c8706 95 Pfam PF16082 Bacteriophage holin family, superfamily II-like 5 78 1.7E-13 T 18-10-2018 IPR032124 Bacteriophage F116-like holin RU84_01630 c32f689b3e30baab9b89a33ed5a3d8e7 147 Pfam PF01814 Hemerythrin HHE cation binding domain 3 119 7.6E-13 T 18-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 RU84_16405 f87c3c55c5ab982ab2e770f9670b8ebc 432 SUPERFAMILY SSF56112 93 351 4.74E-19 T 18-10-2018 IPR011009 Protein kinase-like domain superfamily RU84_16405 f87c3c55c5ab982ab2e770f9670b8ebc 432 Pfam PF03109 ABC1 family 111 228 3.2E-32 T 18-10-2018 IPR004147 UbiB domain RU84_14690 810e48169cb6c5619ff15cf2452fd790 558 Pfam PF05552 Conserved TM helix 25 56 1.5E-7 T 18-10-2018 IPR008910 Conserved TM helix RU84_14690 810e48169cb6c5619ff15cf2452fd790 558 Pfam PF05552 Conserved TM helix 282 330 7.3E-16 T 18-10-2018 IPR008910 Conserved TM helix RU84_14690 810e48169cb6c5619ff15cf2452fd790 558 Pfam PF05552 Conserved TM helix 191 236 3.1E-13 T 18-10-2018 IPR008910 Conserved TM helix RU84_14690 810e48169cb6c5619ff15cf2452fd790 558 Pfam PF05552 Conserved TM helix 101 148 7.9E-18 T 18-10-2018 IPR008910 Conserved TM helix RU84_00140 b5f18de6694a15006d6335bebabc483d 429 SUPERFAMILY SSF52833 241 422 8.27E-9 T 18-10-2018 IPR036249 Thioredoxin-like superfamily RU84_19195 66abace228f795dab93b62b4e481b32e 361 Pfam PF04610 TrbL/VirB6 plasmid conjugal transfer protein 107 321 5.9E-20 T 18-10-2018 IPR007688 Plasmid conjugal transfer TrbL/VirB6 GO:0030255 RU84_02505 269cb01ea26b95b2c5dc90278ceda667 147 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 25 145 4.0E-27 T 18-10-2018 IPR019223 Domain of unknown function DUF2147 RU84_02505 269cb01ea26b95b2c5dc90278ceda667 147 Gene3D G3DSA:2.40.128.520 20 147 3.0E-19 T 18-10-2018 RU84_00275 fc824056924940c99a34bf2fc862d70f 390 Gene3D G3DSA:2.120.10.30 41 388 7.8E-108 T 18-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like RU84_00275 fc824056924940c99a34bf2fc862d70f 390 Pfam PF07995 Glucose / Sorbosone dehydrogenase 56 383 1.6E-125 T 18-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase RU84_00275 fc824056924940c99a34bf2fc862d70f 390 SUPERFAMILY SSF50952 53 377 1.57E-47 T 18-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 RU84_08990 fdadc882da9fdff8ad008c93a50f8f8c 247 Pfam PF02654 Cobalamin-5-phosphate synthase 7 236 1.7E-52 T 18-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 RU84_08990 fdadc882da9fdff8ad008c93a50f8f8c 247 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 247 43.022 T 18-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 RU84_08990 fdadc882da9fdff8ad008c93a50f8f8c 247 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 4 236 9.1E-40 T 18-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 RU84_05850 3804eca595fb1b3e29fe48933f0311ec 90 Pfam PF07023 Protein of unknown function (DUF1315) 4 83 8.5E-33 T 18-10-2018 IPR009749 Protein of unknown function DUF1315 RU84_10450 bc2ac256126eb07027ffaef857a8f7b2 438 SUPERFAMILY SSF56935 86 437 4.33E-21 T 18-10-2018 RU84_03470 35d4e0f29a0e4a43c155c33b0a2cb64c 261 Pfam PF02698 DUF218 domain 105 250 3.6E-28 T 18-10-2018 IPR003848 Domain of unknown function DUF218 RU84_03470 35d4e0f29a0e4a43c155c33b0a2cb64c 261 Gene3D G3DSA:3.40.50.620 135 237 1.5E-9 T 18-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold RU84_09745 5165cd33a48fb665b5a8e78bb36fff70 136 Gene3D G3DSA:1.10.357.10 1 134 1.1E-12 T 18-10-2018 RU84_09745 5165cd33a48fb665b5a8e78bb36fff70 136 SUPERFAMILY SSF48498 26 109 8.9E-10 T 18-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily RU84_00285 cc56d0353eb5a367692314563b73415e 279 Pfam PF01226 Formate/nitrite transporter 34 270 9.8E-40 T 18-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 RU84_00285 cc56d0353eb5a367692314563b73415e 279 Gene3D G3DSA:1.20.1080.10 32 278 3.2E-35 T 18-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 RU84_14065 0836971a91836798e561587779fd78c9 156 Pfam PF16459 Phage tail assembly chaperone, TAC 7 120 1.0E-30 T 18-10-2018 IPR024410 Phage tail assembly chaperone protein, TAC RU84_00595 090b4925a1336b710644270b60d7ff22 246 Gene3D G3DSA:1.20.1270.180 33 116 1.8E-6 T 18-10-2018 RU84_00595 090b4925a1336b710644270b60d7ff22 246 Pfam PF07007 Lysozyme inhibitor LprI 36 106 4.9E-6 T 18-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal RU84_03575 598d7808974d8caa45fdc3413d12b71d 163 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 14 158 1.0E-22 T 18-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RU84_03575 598d7808974d8caa45fdc3413d12b71d 163 Pfam PF04093 rod shape-determining protein MreD 16 155 1.2E-11 T 18-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 RU84_15550 86d757a3bb6f9302645f84cefe236b9e 120 Pfam PF11604 Copper binding periplasmic protein CusF 52 116 1.2E-23 T 18-10-2018 IPR021647 Copper binding periplasmic protein CusF RU84_15550 86d757a3bb6f9302645f84cefe236b9e 120 Gene3D G3DSA:2.40.50.320 46 120 3.0E-25 T 18-10-2018 RU84_14070 fda229412d0b857bd3f8d78bc0ba6334 153 Pfam PF16460 Phage tail tube, TTP, lambda-like 25 151 5.8E-21 T 18-10-2018 IPR032495 Phage tail tube protein, lambda-like RU84_03630 51db259cdb7ee60addcc78b790fdd343 266 Pfam PF08223 PaaX-like protein C-terminal domain 171 257 1.9E-5 T 18-10-2018 IPR013225 PaaX-like, C-terminal RU84_03630 51db259cdb7ee60addcc78b790fdd343 266 Gene3D G3DSA:1.10.10.10 4 72 5.4E-7 T 18-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily RU84_17415 c8ed8b979d5b93f374ad2eb58ee79532 161 Pfam PF11158 Protein of unknown function (DUF2938) 11 157 9.1E-58 T 18-10-2018 IPR021329 Protein of unknown function DUF2938 RU84_04380 b025b75771745d7ede55c8ef71fb63af 126 Pfam PF04138 GtrA-like protein 10 124 6.3E-15 T 18-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 RU84_15100 1b703c13e3bf2b0b0bed0b322755331f 264 Gene3D G3DSA:3.90.70.10 51 208 2.0E-29 T 18-10-2018 RU84_15100 1b703c13e3bf2b0b0bed0b322755331f 264 Pfam PF03412 Peptidase C39 family 63 197 8.8E-16 T 18-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 RU84_13890 5a25c7b0f1c0c0e2c958ba6be555d6dc 441 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 150 213 7.0E-4 T 18-10-2018 RU84_13890 5a25c7b0f1c0c0e2c958ba6be555d6dc 441 Pfam PF12787 EcsC protein family 78 319 8.7E-20 T 18-10-2018 IPR024787 EcsC protein RU84_16035 d14cfb89ae8526eb6ef91e24b79bc86b 726 Pfam PF05787 Bacterial protein of unknown function (DUF839) 211 670 3.5E-18 T 18-10-2018 IPR008557 Protein of unknown function DUF839 RU84_10015 5d34090128cb3b8082a531109c6a7920 244 Gene3D G3DSA:3.40.50.12500 1 243 2.5E-86 T 18-10-2018 RU84_10015 5d34090128cb3b8082a531109c6a7920 244 Pfam PF01177 Asp/Glu/Hydantoin racemase 5 210 3.3E-13 T 18-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 RU84_06585 6e53caea8e54276eb270c902e01edf29 278 Pfam PF03618 Kinase/pyrophosphorylase 11 268 3.4E-76 T 18-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 RU84_06585 6e53caea8e54276eb270c902e01edf29 278 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 8 277 76.035 T 18-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein RU84_08635 ff18f29ead034b49ba50b728573f3f84 469 Pfam PF02667 Short chain fatty acid transporter 9 455 6.4E-87 T 18-10-2018 IPR006160 Short chain fatty acid transporter AtoE RU84_14575 d862f606e66e33bfeb301b004ae4ca98 269 Pfam PF01578 Cytochrome C assembly protein 43 266 8.0E-23 T 18-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 RU84_09400 94c43ebf898f0083d155299c554c9b45 113 Pfam PF07238 PilZ domain 11 75 4.0E-6 T 18-10-2018 IPR009875 PilZ domain GO:0035438 RU84_09400 94c43ebf898f0083d155299c554c9b45 113 Gene3D G3DSA:2.40.10.220 2 113 2.2E-33 T 18-10-2018 RU84_14475 ea3b080276623ec7615600eb34b067b4 263 Pfam PF02616 Segregation and condensation protein ScpA 53 142 1.2E-13 T 18-10-2018 IPR003768 Segregation and condensation protein A RU84_17610 c51ccb9ef012e595d7f3896bcc0a2f9b 306 Pfam PF04261 Dyp-type peroxidase family 27 298 6.6E-70 T 18-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RU84_17610 c51ccb9ef012e595d7f3896bcc0a2f9b 306 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 4 297 3.7E-66 T 18-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 RU84_17610 c51ccb9ef012e595d7f3896bcc0a2f9b 306 SUPERFAMILY SSF54909 3 303 1.97E-88 T 18-10-2018 IPR011008 Dimeric alpha-beta barrel RU84_12185 684070cda6a7544eeb97bc3fb62eefb7 200 Pfam PF01810 LysE type translocator 17 200 1.8E-37 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_17355 32efb943c3f746edeb0bda59850251ae 214 Pfam PF03458 UPF0126 domain 5 79 6.1E-20 T 18-10-2018 IPR005115 Uncharacterised domain UPF0126 RU84_17355 32efb943c3f746edeb0bda59850251ae 214 Pfam PF03458 UPF0126 domain 91 163 8.8E-20 T 18-10-2018 IPR005115 Uncharacterised domain UPF0126 RU84_02550 371457e0249bf2956e1be46d32f146c2 167 Pfam PF13689 Domain of unknown function (DUF4154) 34 164 2.2E-23 T 18-10-2018 IPR025293 YfiR-like RU84_19290 6a03f73b8c109175e7ea77ec8e2a1068 414 Pfam PF06666 Protein of unknown function (DUF1173) 18 377 1.4E-101 T 18-10-2018 IPR009553 Protein of unknown function DUF1173 RU84_09835 82853397b078ca272916f51683dc1756 173 Pfam PF06127 Protein of unknown function (DUF962) 1 147 3.5E-25 T 18-10-2018 IPR009305 Protein of unknown function DUF962 RU84_00040 97973e7f065ce28b322284cfc1dc03d1 334 Gene3D G3DSA:3.40.190.170 31 233 2.3E-11 T 18-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily RU84_11095 c86704c32c3ac4f92829f866e1be3837 182 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 8 178 8.1E-33 T 18-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related RU84_11095 c86704c32c3ac4f92829f866e1be3837 182 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 178 6.1E-35 T 18-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 RU84_11095 c86704c32c3ac4f92829f866e1be3837 182 Gene3D G3DSA:2.60.450.10 58 182 1.6E-8 T 18-10-2018 RU84_05065 f57f1953715a34159f683b44cfc9954a 364 Pfam PF00487 Fatty acid desaturase 76 340 8.1E-28 T 18-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 RU84_16185 40c29e74cb904c1201c9d3e2672d1e03 81 Pfam PF04102 SlyX 16 81 1.1E-16 T 18-10-2018 IPR007236 SlyX RU84_00965 2a14c9e2f09760f8a62c42b4dc33703c 360 Pfam PF04332 Protein of unknown function (DUF475) 53 355 1.1E-114 T 18-10-2018 IPR007427 Protein of unknown function DUF475 RU84_06965 6f0e9d10c2194783fe376791b6d8fb80 227 Pfam PF00106 short chain dehydrogenase 58 190 1.2E-8 T 18-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR RU84_06965 6f0e9d10c2194783fe376791b6d8fb80 227 Gene3D G3DSA:3.40.50.720 3 208 9.3E-12 T 18-10-2018 RU84_06965 6f0e9d10c2194783fe376791b6d8fb80 227 SUPERFAMILY SSF51735 63 191 1.17E-11 T 18-10-2018 IPR036291 NAD(P)-binding domain superfamily RU84_10915 cc434863191d54770aa3e80eac6b6c7d 152 Pfam PF14433 SUKH-3 immunity protein 10 143 2.8E-17 T 18-10-2018 IPR025850 SUKH-3 immunity protein RU84_01440 f3467e8cc713c02e1bc9c0cf1cda8f7d 213 Pfam PF05137 Fimbrial assembly protein (PilN) 100 187 1.9E-17 T 18-10-2018 IPR007813 Fimbrial assembly PilN RU84_11150 03f75c951754e76a034b27206b14f999 404 SUPERFAMILY SSF103473 19 402 1.15E-48 T 18-10-2018 IPR036259 MFS transporter superfamily RU84_11150 03f75c951754e76a034b27206b14f999 404 Gene3D G3DSA:1.20.1250.20 17 401 1.0E-37 T 18-10-2018 RU84_11150 03f75c951754e76a034b27206b14f999 404 Pfam PF07690 Major Facilitator Superfamily 31 250 3.8E-22 T 18-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 RU84_18000 3c0a3e2bbc7b45150afd232aa2a5c053 400 Pfam PF01943 Polysaccharide biosynthesis protein 3 266 1.8E-19 T 18-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 RU84_08980 8103ee439a3e2703de392bb37d8fe751 295 Pfam PF01925 Sulfite exporter TauE/SafE 7 264 2.5E-48 T 18-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 RU84_06510 5a9dabc7e2c6183e990aeffd8ac5566d 198 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 7 151 2.6E-8 T 18-10-2018 IPR007296 Domain of unknown function DUF403 RU84_05650 cefd9c4febf2e158f9246ab370520bad 195 Pfam PF03591 AzlC protein 2 122 6.1E-28 T 18-10-2018 IPR011606 Branched-chain amino acid transport, permease RU84_11230 337651a67c367d9a851d39e54d9c7a7d 197 Pfam PF01810 LysE type translocator 12 189 5.7E-12 T 18-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 RU84_07080 9d772300e73764a24c505eb4ed2462c0 147 Pfam PF06271 RDD family 7 140 4.3E-29 T 18-10-2018 IPR010432 RDD RU84_01470 4754042765015ef24534fea2554c048c 291 Gene3D G3DSA:3.30.70.1070 84 182 4.5E-8 T 18-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 RU84_05005 63288209cfa36afd4b91171708eba5a2 127 Pfam PF11342 Protein of unknown function (DUF3144) 20 105 5.4E-31 T 18-10-2018 IPR021490 Protein of unknown function DUF3144 RU84_05655 768e000645ebba8c8d0f11ff5b2db9a5 105 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 3 99 2.4E-20 T 18-10-2018 IPR008407 Branched-chain amino acid transport, AzlD RU84_16045 30f1640821448bde81816c04bbeb2954 259 Pfam PF05742 Transport and Golgi organisation 2 1 233 9.1E-57 T 18-10-2018 IPR008551 Transport and Golgi organisation protein 2 RU84_03975 db1491323ba6d5fded247478506e8bad 299 Pfam PF04228 Putative neutral zinc metallopeptidase 1 295 4.3E-112 T 18-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative RU84_15955 31e1a3526dee957b5140376977d2cd05 184 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 104 156 3.6E-9 T 18-10-2018 IPR018637 Domain of unknown function DUF2059 RU84_11990 f79733893fdd24b09f8b2cb71962d48a 115 Pfam PF10711 Hypothetical protein (DUF2513) 2 94 3.9E-17 T 18-10-2018 IPR019650 Protein of unknown function DUF2513 RU84_02815 6dfa9ab51646b00d2ef38ace3ae4e169 113 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 21 98 4.5E-10 T 18-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative RU84_04080 980cc22fc14bf759cf8aa48bb068d8c2 121 SUPERFAMILY SSF48024 26 89 2.88E-5 T 18-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 RU84_15450 fbba1f8f18f03c8ec7c9d88a38f389eb 104 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 5 99 6.0E-35 T 18-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 RU84_00030 bfb0d2765389dac136bde307faeada92 185 Pfam PF09335 SNARE associated Golgi protein 45 171 2.7E-22 T 18-10-2018 IPR032816 SNARE associated Golgi protein RU84_06305 0d3b6858c266a612a819875aae5c9f69 555 Pfam PF02470 MlaD protein 181 241 2.3E-8 T 18-10-2018 IPR003399 Mce/MlaD RU84_06305 0d3b6858c266a612a819875aae5c9f69 555 Pfam PF02470 MlaD protein 309 406 2.8E-16 T 18-10-2018 IPR003399 Mce/MlaD RU84_06305 0d3b6858c266a612a819875aae5c9f69 555 Pfam PF02470 MlaD protein 66 156 6.6E-11 T 18-10-2018 IPR003399 Mce/MlaD RU84_16450 203885679099667c8019cbbcedd0176e 93 Pfam PF10734 Protein of unknown function (DUF2523) 9 83 3.1E-10 T 18-10-2018 IPR019670 Protein of unkown function DUF2523 RU84_16155 0cfe908ba60c2b9454df310d971d86d0 190 Pfam PF03729 Short repeat of unknown function (DUF308) 80 148 1.5E-8 T 18-10-2018 IPR005325 Protein of unknown function DUF308, membrane RU84_16155 0cfe908ba60c2b9454df310d971d86d0 190 Pfam PF03729 Short repeat of unknown function (DUF308) 22 91 2.2E-10 T 18-10-2018 IPR005325 Protein of unknown function DUF308, membrane RU84_08935 ce3c458b475db42df3f8966268dc48ef 374 Pfam PF12698 ABC-2 family transporter protein 24 364 8.2E-47 T 18-10-2018 RU84_07750 799214d38105eada0c8109c6f6381a78 202 Pfam PF07290 Protein of unknown function (DUF1449) 11 191 3.9E-21 T 18-10-2018 IPR010840 Protein of unknown function DUF1449 RU84_02270 5b80dbe150cd655b1f9058ea9e2ff171 237 Pfam PF11306 Protein of unknown function (DUF3108) 26 232 1.2E-23 T 18-10-2018 IPR021457 Protein of unknown function DUF3108 RU84_16325 af47ae6c0749ff28be8252099d4de784 225 Pfam PF07077 Protein of unknown function (DUF1345) 40 214 9.9E-60 T 18-10-2018 IPR009781 Protein of unknown function DUF1345 RU84_02890 fec5ee2be9efd367c2c48c28cf54110e 150 Pfam PF05926 Phage head completion protein (GPL) 17 150 1.2E-33 T 18-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 RU84_13580 5ec38642157bf29ca944b9010f1655c8 267 Pfam PF10065 Uncharacterized conserved protein (DUF2303) 23 264 4.3E-44 T 18-10-2018 IPR019276 Protein of unkown function DUF2303 RU84_00550 b2f4ef5974b5322389ef5a42df67df6b 436 Pfam PF04286 Protein of unknown function (DUF445) 55 429 4.3E-72 T 18-10-2018 IPR007383 Protein of unknown function DUF445