locus-tag class description A388_00001 PF00579 tRNA synthetases class I (W and Y) A388_00002 PF03702 Anhydro-N-acetylmuramic acid kinase A388_00003 PF00561 alpha/beta hydrolase fold A388_00004 PF01521 Iron-sulphur cluster biosynthesis A388_00008 PF00005 ABC transporter A388_00008 PF12848 ABC transporter A388_00009 PF09335 SNARE associated Golgi protein A388_00011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_00011 PF01751 Toprim domain A388_00011 PF00204 DNA gyrase B A388_00011 PF00986 DNA gyrase B subunit, carboxyl terminus A388_00011 PF18053 DNA gyrase B subunit insert domain A388_00012 PF02463 RecF/RecN/SMC N terminal domain A388_00013 PF00712 DNA polymerase III beta subunit, N-terminal domain A388_00013 PF02768 DNA polymerase III beta subunit, C-terminal domain A388_00013 PF02767 DNA polymerase III beta subunit, central domain A388_00014 PF11638 DnaA N-terminal domain A388_00014 PF08299 Bacterial dnaA protein helix-turn-helix A388_00014 PF00308 Bacterial dnaA protein A388_00015 PF00468 Ribosomal protein L34 A388_00016 PF00825 Ribonuclease P A388_00017 PF01809 Putative membrane protein insertion efficiency factor A388_00018 PF02096 60Kd inner membrane protein A388_00018 PF14849 YidC periplasmic domain A388_00019 PF01926 50S ribosome-binding GTPase A388_00019 PF12631 MnmE helical domain A388_00019 PF10396 GTP-binding protein TrmE N-terminus A388_00020 PF02583 Metal-sensitive transcriptional repressor A388_00021 PF16916 Dimerisation domain of Zinc Transporter A388_00021 PF01545 Cation efflux family A388_00022 PF10411 Disulfide bond isomerase protein N-terminus A388_00022 PF13098 Thioredoxin-like domain A388_00024 PF00156 Phosphoribosyl transferase domain A388_00026 PF01979 Amidohydrolase family A388_00027 PF00355 Rieske [2Fe-2S] domain A388_00028 PF03738 Glutathionylspermidine synthase preATP-grasp A388_00030 PF03741 Integral membrane protein TerC family A388_00031 PF01569 PAP2 superfamily A388_00033 PF08245 Mur ligase middle domain A388_00033 PF01225 Mur ligase family, catalytic domain A388_00033 PF02875 Mur ligase family, glutamate ligase domain A388_00035 PF00731 AIR carboxylase A388_00036 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain A388_00036 PF02222 ATP-grasp domain A388_00041 PF00012 Hsp70 protein A388_00042 PF01025 GrpE A388_00043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_00043 PF03466 LysR substrate binding domain A388_00047 PF07859 alpha/beta hydrolase fold A388_00048 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A388_00053 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A388_00054 PF01252 Signal peptidase (SPase) II A388_00055 PF08264 Anticodon-binding domain of tRNA A388_00055 PF00133 tRNA synthetases class I (I, L, M and V) A388_00055 PF06827 Zinc finger found in FPG and IleRS A388_00056 PF01687 Riboflavin kinase A388_00056 PF06574 FAD synthetase A388_00058 PF01048 Phosphorylase superfamily A388_00059 PF00440 Bacterial regulatory proteins, tetR family A388_00059 PF08362 YcdC-like protein, C-terminal region A388_00060 PF00005 ABC transporter A388_00061 PF00528 Binding-protein-dependent transport system inner membrane component A388_00062 PF00296 Luciferase-like monooxygenase A388_00063 PF09084 NMT1/THI5 like A388_00064 PF09084 NMT1/THI5 like A388_00065 PF00696 Amino acid kinase family A388_00065 PF00583 Acetyltransferase (GNAT) family A388_00068 PF00106 short chain dehydrogenase A388_00069 PF13419 Haloacid dehalogenase-like hydrolase A388_00071 PF01323 DSBA-like thioredoxin domain A388_00072 PF00440 Bacterial regulatory proteins, tetR family A388_00072 PF08360 QacR-like protein, C-terminal region A388_00073 PF00440 Bacterial regulatory proteins, tetR family A388_00074 PF00175 Oxidoreductase NAD-binding domain A388_00075 PF00487 Fatty acid desaturase A388_00076 PF03725 3' exoribonuclease family, domain 2 A388_00076 PF01138 3' exoribonuclease family, domain 1 A388_00077 PF04185 Phosphoesterase family A388_00077 PF05506 Domain of unknown function (DUF756) A388_00079 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain A388_00079 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain A388_00080 PF01510 N-acetylmuramoyl-L-alanine amidase A388_00081 PF03023 Lipid II flippase MurJ A388_00082 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase A388_00082 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A388_00083 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase A388_00083 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A388_00084 PF02706 Chain length determinant protein A388_00084 PF13614 AAA domain A388_00084 PF13807 G-rich domain on putative tyrosine kinase A388_00085 PF01451 Low molecular weight phosphotyrosine protein phosphatase A388_00086 PF02563 Polysaccharide biosynthesis/export protein A388_00086 PF18412 Outer-membrane lipoprotein Wza C-terminal domain A388_00086 PF10531 SLBB domain A388_00087 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A388_00087 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A388_00087 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A388_00089 PF04230 Polysaccharide pyruvyl transferase A388_00090 PF00535 Glycosyl transferase family 2 A388_00093 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A388_00093 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A388_00093 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A388_00094 PF00534 Glycosyl transferases group 1 A388_00094 PF13439 Glycosyltransferase Family 4 A388_00095 PF02397 Bacterial sugar transferase A388_00096 PF17836 PglD N-terminal domain A388_00096 PF14602 Hexapeptide repeat of succinyl-transferase A388_00096 PF00132 Bacterial transferase hexapeptide (six repeats) A388_00097 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family A388_00098 PF02719 Polysaccharide biosynthesis protein A388_00099 PF00483 Nucleotidyl transferase A388_00100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain A388_00100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain A388_00100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain A388_00101 PF00342 Phosphoglucose isomerase A388_00102 PF16363 GDP-mannose 4,6 dehydratase A388_00103 PF00884 Sulfatase A388_00106 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A388_00106 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A388_00106 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A388_00106 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A388_00107 PF02652 L-lactate permease A388_00108 PF07729 FCD domain A388_00108 PF00392 Bacterial regulatory proteins, gntR family A388_00109 PF01070 FMN-dependent dehydrogenase A388_00110 PF01565 FAD binding domain A388_00110 PF09330 D-lactate dehydrogenase, membrane binding A388_00111 PF00155 Aminotransferase class I and II A388_00112 PF00392 Bacterial regulatory proteins, gntR family A388_00112 PF07729 FCD domain A388_00114 PF00285 Citrate synthase, C-terminal domain A388_00115 PF00330 Aconitase family (aconitate hydratase) A388_00115 PF00694 Aconitase C-terminal domain A388_00123 PF00849 RNA pseudouridylate synthase A388_00126 PF00593 TonB dependent receptor A388_00126 PF07715 TonB-dependent Receptor Plug Domain A388_00128 PF01037 Lrp/AsnC ligand binding domain A388_00129 PF01266 FAD dependent oxidoreductase A388_00130 PF00842 Alanine racemase, C-terminal domain A388_00130 PF01168 Alanine racemase, N-terminal domain A388_00131 PF01042 Endoribonuclease L-PSP A388_00132 PF00324 Amino acid permease A388_00133 PF00324 Amino acid permease A388_00135 PF00171 Aldehyde dehydrogenase family A388_00136 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A388_00136 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A388_00137 PF00501 AMP-binding enzyme A388_00137 PF13193 AMP-binding enzyme C-terminal domain A388_00138 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00138 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00138 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00139 PF00378 Enoyl-CoA hydratase/isomerase A388_00140 PF00378 Enoyl-CoA hydratase/isomerase A388_00141 PF07690 Major Facilitator Superfamily A388_00141 PF00083 Sugar (and other) transporter A388_00142 PF00196 Bacterial regulatory proteins, luxR family A388_00142 PF03472 Autoinducer binding domain A388_00143 PF16363 GDP-mannose 4,6 dehydratase A388_00144 PF01648 4'-phosphopantetheinyl transferase superfamily A388_00147 PF01722 BolA-like protein A388_00149 PF13614 AAA domain A388_00152 PF09335 SNARE associated Golgi protein A388_00153 PF07681 DoxX A388_00154 PF04286 Protein of unknown function (DUF445) A388_00155 PF02540 NAD synthase A388_00155 PF00958 GMP synthase C terminal domain A388_00155 PF00117 Glutamine amidotransferase class-I A388_00156 PF13427 Domain of unknown function (DUF4111) A388_00156 PF01909 Nucleotidyltransferase domain A388_00157 PF03551 Transcriptional regulator PadR-like family A388_00159 PF02678 Pirin A388_00159 PF05726 Pirin C-terminal cupin domain A388_00163 PF03485 Arginyl tRNA synthetase N terminal domain A388_00163 PF05746 DALR anticodon binding domain A388_00163 PF00750 tRNA synthetases class I (R) A388_00164 PF03949 Malic enzyme, NAD binding domain A388_00164 PF00390 Malic enzyme, N-terminal domain A388_00165 PF04261 Dyp-type peroxidase family A388_00166 PF01810 LysE type translocator A388_00167 PF00950 ABC 3 transport family A388_00168 PF00005 ABC transporter A388_00172 PF00119 ATP synthase A chain A388_00173 PF00137 ATP synthase subunit C A388_00174 PF00430 ATP synthase B/B' CF(0) A388_00175 PF00213 ATP synthase delta (OSCP) subunit A388_00176 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A388_00176 PF00306 ATP synthase alpha/beta chain, C terminal domain A388_00176 PF02874 ATP synthase alpha/beta family, beta-barrel domain A388_00177 PF00231 ATP synthase A388_00178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A388_00178 PF02874 ATP synthase alpha/beta family, beta-barrel domain A388_00179 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain A388_00181 PF00255 Glutathione peroxidase A388_00183 PF07690 Major Facilitator Superfamily A388_00184 PF00440 Bacterial regulatory proteins, tetR family A388_00185 PF00892 EamA-like transporter family A388_00186 PF01300 Telomere recombination A388_00187 PF02481 DNA recombination-mediator protein A A388_00187 PF17782 DprA winged helix domain A388_00189 PF01327 Polypeptide deformylase A388_00194 PF00440 Bacterial regulatory proteins, tetR family A388_00198 PF00291 Pyridoxal-phosphate dependent enzyme A388_00200 PF03358 NADPH-dependent FMN reductase A388_00204 PF04055 Radical SAM superfamily A388_00204 PF08497 Radical SAM N-terminal A388_00204 PF11842 Domain of unknown function (DUF3362) A388_00207 PF11798 IMS family HHH motif A388_00207 PF11799 impB/mucB/samB family C-terminal domain A388_00207 PF00817 impB/mucB/samB family A388_00209 PF07690 Major Facilitator Superfamily A388_00210 PF03641 Possible lysine decarboxylase A388_00211 PF03471 Transporter associated domain A388_00211 PF03741 Integral membrane protein TerC family A388_00212 PF02810 SEC-C motif A388_00213 PF03458 UPF0126 domain A388_00214 PF07690 Major Facilitator Superfamily A388_00215 PF00521 DNA gyrase/topoisomerase IV, subunit A A388_00215 PF03989 DNA gyrase C-terminal domain, beta-propeller A388_00216 PF13193 AMP-binding enzyme C-terminal domain A388_00216 PF00501 AMP-binding enzyme A388_00219 PF00719 Inorganic pyrophosphatase A388_00220 PF03573 outer membrane porin, OprD family A388_00223 PF00701 Dihydrodipicolinate synthetase family A388_00225 PF00392 Bacterial regulatory proteins, gntR family A388_00225 PF00155 Aminotransferase class I and II A388_00228 PF00665 Integrase core domain A388_00233 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_00234 PF03358 NADPH-dependent FMN reductase A388_00235 PF01758 Sodium Bile acid symporter family A388_00237 PF01022 Bacterial regulatory protein, arsR family A388_00238 PF03960 ArsC family A388_00240 PF13411 MerR HTH family regulatory protein A388_00242 PF01252 Signal peptidase (SPase) II A388_00245 PF01751 Toprim domain A388_00245 PF01396 Topoisomerase DNA binding C4 zinc finger A388_00245 PF01131 DNA topoisomerase A388_00248 PF00809 Pterin binding enzyme A388_00250 PF02411 MerT mercuric transport protein A388_00251 PF13610 DDE domain A388_00252 PF11809 Domain of unknown function (DUF3330) A388_00252 PF00563 EAL domain A388_00253 PF13411 MerR HTH family regulatory protein A388_00254 PF00403 Heavy-metal-associated domain A388_00254 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_00254 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A388_00255 PF03203 MerC mercury resistance protein A388_00256 PF00403 Heavy-metal-associated domain A388_00257 PF00376 MerR family regulatory protein A388_00257 PF09278 MerR, DNA binding A388_00258 PF00440 Bacterial regulatory proteins, tetR family A388_00258 PF02909 Tetracyclin repressor-like, C-terminal domain A388_00259 PF07690 Major Facilitator Superfamily A388_00260 PF00892 EamA-like transporter family A388_00261 PF13610 DDE domain A388_00262 PF00302 Chloramphenicol acetyltransferase A388_00263 PF03400 IS1 transposase A388_00264 PF13700 Domain of unknown function (DUF4158) A388_00264 PF01526 Tn3 transposase DDE domain A388_00265 PF02796 Helix-turn-helix domain of resolvase A388_00265 PF00239 Resolvase, N terminal domain A388_00267 PF01526 Tn3 transposase DDE domain A388_00267 PF13700 Domain of unknown function (DUF4158) A388_00268 PF02796 Helix-turn-helix domain of resolvase A388_00268 PF00239 Resolvase, N terminal domain A388_00269 PF13610 DDE domain A388_00275 PF07690 Major Facilitator Superfamily A388_00276 PF03466 LysR substrate binding domain A388_00276 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_00280 PF00248 Aldo/keto reductase family A388_00281 PF02311 AraC-like ligand binding domain A388_00281 PF12833 Helix-turn-helix domain A388_00284 PF01638 HxlR-like helix-turn-helix A388_00287 PF01638 HxlR-like helix-turn-helix A388_00288 PF02525 Flavodoxin-like fold A388_00290 PF13302 Acetyltransferase (GNAT) domain A388_00292 PF02705 K+ potassium transporter A388_00297 PF00230 Major intrinsic protein A388_00300 PF00977 Histidine biosynthesis protein A388_00301 PF01636 Phosphotransferase enzyme family A388_00306 PF00977 Histidine biosynthesis protein A388_00309 PF00117 Glutamine amidotransferase class-I A388_00310 PF00475 Imidazoleglycerol-phosphate dehydratase A388_00314 PF00583 Acetyltransferase (GNAT) family A388_00315 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain A388_00315 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain A388_00316 PF00672 HAMP domain A388_00316 PF00512 His Kinase A (phospho-acceptor) domain A388_00316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_00317 PF00072 Response regulator receiver domain A388_00317 PF00486 Transcriptional regulatory protein, C terminal A388_00318 PF00575 S1 RNA binding domain A388_00318 PF09371 Tex-like protein N-terminal domain A388_00318 PF16921 Tex protein YqgF-like domain A388_00318 PF17674 HHH domain A388_00319 PF00916 Sulfate permease family A388_00319 PF01740 STAS domain A388_00320 PF00106 short chain dehydrogenase A388_00321 PF01053 Cys/Met metabolism PLP-dependent enzyme A388_00322 PF00005 ABC transporter A388_00322 PF12848 ABC transporter A388_00327 PF00529 HlyD membrane-fusion protein of T1SS A388_00327 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A388_00328 PF00873 AcrB/AcrD/AcrF family A388_00329 PF01545 Cation efflux family A388_00335 PF00324 Amino acid permease A388_00338 PF00749 tRNA synthetases class I (E and Q), catalytic domain A388_00341 PF01795 MraW methylase family A388_00343 PF00905 Penicillin binding protein transpeptidase domain A388_00343 PF03717 Penicillin-binding Protein dimerisation domain A388_00344 PF08245 Mur ligase middle domain A388_00344 PF01225 Mur ligase family, catalytic domain A388_00344 PF02875 Mur ligase family, glutamate ligase domain A388_00345 PF02875 Mur ligase family, glutamate ligase domain A388_00345 PF01225 Mur ligase family, catalytic domain A388_00345 PF08245 Mur ligase middle domain A388_00346 PF00953 Glycosyl transferase family 4 A388_00348 PF13847 Methyltransferase domain A388_00349 PF00905 Penicillin binding protein transpeptidase domain A388_00349 PF17092 Penicillin-binding protein OB-like domain A388_00349 PF00912 Transglycosylase A388_00354 PF00263 Bacterial type II and III secretion system protein A388_00354 PF11741 AMIN domain A388_00354 PF03958 Bacterial type II/III secretion system short domain A388_00354 PF07660 Secretin and TonB N terminus short domain A388_00355 PF01202 Shikimate kinase A388_00356 PF01761 3-dehydroquinate synthase A388_00358 PF00310 Glutamine amidotransferases class-II A388_00358 PF01645 Conserved region in glutamate synthase A388_00358 PF04898 Glutamate synthase central domain A388_00358 PF01493 GXGXG motif A388_00359 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster A388_00359 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_00361 PF04011 LemA family A388_00362 PF04536 TPM domain A388_00364 PF07963 Prokaryotic N-terminal methylation motif A388_00364 PF00114 Pilin (bacterial filament) A388_00365 PF15864 Protein glycosylation ligase A388_00365 PF11846 Virulence factor membrane-bound polymerase, C-terminal A388_00365 PF04932 O-Antigen ligase A388_00366 PF00210 Ferritin-like domain A388_00367 PF04324 BFD-like [2Fe-2S] binding domain A388_00368 PF01042 Endoribonuclease L-PSP A388_00369 PF02824 TGS domain A388_00369 PF04607 Region found in RelA / SpoT proteins A388_00369 PF13291 ACT domain A388_00370 PF01192 RNA polymerase Rpb6 A388_00371 PF00625 Guanylate kinase A388_00372 PF02401 LytB protein A388_00380 PF00886 Ribosomal protein S16 A388_00381 PF01782 RimM N-terminal domain A388_00381 PF05239 PRC-barrel domain A388_00382 PF01746 tRNA (Guanine-1)-methyltransferase A388_00383 PF01245 Ribosomal protein L19 A388_00384 PF00561 alpha/beta hydrolase fold A388_00385 PF03280 Proteobacterial lipase chaperone protein A388_00386 PF01509 TruB family pseudouridylate synthase (N terminal domain) A388_00386 PF09157 Pseudouridine synthase II TruB, C-terminal A388_00386 PF16198 tRNA pseudouridylate synthase B C-terminal domain A388_00387 PF01925 Sulfite exporter TauE/SafE A388_00389 PF00892 EamA-like transporter family A388_00390 PF00892 EamA-like transporter family A388_00391 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A388_00391 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A388_00392 PF01565 FAD binding domain A388_00392 PF02913 FAD linked oxidases, C-terminal domain A388_00394 PF03992 Antibiotic biosynthesis monooxygenase A388_00395 PF02525 Flavodoxin-like fold A388_00397 PF07690 Major Facilitator Superfamily A388_00398 PF12805 FUSC-like inner membrane protein yccS A388_00399 PF00080 Copper/zinc superoxide dismutase (SODC) A388_00400 PF01594 AI-2E family transporter A388_00405 PF08241 Methyltransferase domain A388_00407 PF00324 Amino acid permease A388_00408 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain A388_00408 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A388_00409 PF00202 Aminotransferase class-III A388_00410 PF04958 Arginine N-succinyltransferase beta subunit A388_00411 PF00171 Aldehyde dehydrogenase family A388_00412 PF04996 Succinylarginine dihydrolase A388_00413 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family A388_00419 PF03466 LysR substrate binding domain A388_00419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_00420 PF00892 EamA-like transporter family A388_00424 PF05746 DALR anticodon binding domain A388_00424 PF02092 Glycyl-tRNA synthetase beta subunit A388_00425 PF02091 Glycyl-tRNA synthetase alpha subunit A388_00426 PF07690 Major Facilitator Superfamily A388_00429 PF00571 CBS domain A388_00430 PF04024 PspC domain A388_00432 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00432 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00432 PF12806 Acetyl-CoA dehydrogenase C-terminal like A388_00432 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00434 PF01488 Shikimate / quinate 5-dehydrogenase A388_00434 PF08501 Shikimate dehydrogenase substrate binding domain A388_00434 PF18317 Shikimate 5'-dehydrogenase C-terminal domain A388_00435 PF01218 Coproporphyrinogen III oxidase A388_00436 PF00925 GTP cyclohydrolase II A388_00437 PF02780 Transketolase, C-terminal domain A388_00437 PF02779 Transketolase, pyrimidine binding domain A388_00437 PF13292 1-deoxy-D-xylulose-5-phosphate synthase A388_00438 PF00459 Inositol monophosphatase family A388_00439 PF03880 DbpA RNA binding domain A388_00439 PF00270 DEAD/DEAH box helicase A388_00439 PF00271 Helicase conserved C-terminal domain A388_00439 PF12343 Cold shock protein DEAD box A A388_00441 PF00005 ABC transporter A388_00442 PF02405 Permease MlaE A388_00444 PF05494 MlaC protein A388_00446 PF01544 CorA-like Mg2+ transporter protein A388_00447 PF03641 Possible lysine decarboxylase A388_00448 PF00293 NUDIX domain A388_00449 PF00156 Phosphoribosyl transferase domain A388_00450 PF17191 RecG wedge domain A388_00450 PF00271 Helicase conserved C-terminal domain A388_00450 PF00270 DEAD/DEAH box helicase A388_00453 PF01553 Acyltransferase A388_00455 PF00375 Sodium:dicarboxylate symporter family A388_00457 PF01926 50S ribosome-binding GTPase A388_00458 PF02082 Transcriptional regulator A388_00459 PF00175 Oxidoreductase NAD-binding domain A388_00459 PF00042 Globin A388_00459 PF00970 Oxidoreductase FAD-binding domain A388_00460 PF05872 Bacterial protein of unknown function (DUF853) A388_00461 PF01053 Cys/Met metabolism PLP-dependent enzyme A388_00462 PF00117 Glutamine amidotransferase class-I A388_00463 PF00338 Ribosomal protein S10p/S20e A388_00464 PF00297 Ribosomal protein L3 A388_00465 PF00573 Ribosomal protein L4/L1 family A388_00466 PF00276 Ribosomal protein L23 A388_00467 PF00181 Ribosomal Proteins L2, RNA binding domain A388_00467 PF03947 Ribosomal Proteins L2, C-terminal domain A388_00468 PF00203 Ribosomal protein S19 A388_00469 PF00237 Ribosomal protein L22p/L17e A388_00470 PF00189 Ribosomal protein S3, C-terminal domain A388_00470 PF07650 KH domain A388_00471 PF00252 Ribosomal protein L16p/L10e A388_00472 PF00831 Ribosomal L29 protein A388_00473 PF00366 Ribosomal protein S17 A388_00474 PF00238 Ribosomal protein L14p/L23e A388_00475 PF00467 KOW motif A388_00475 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 A388_00476 PF00281 Ribosomal protein L5 A388_00476 PF00673 ribosomal L5P family C-terminus A388_00477 PF00253 Ribosomal protein S14p/S29e A388_00478 PF00410 Ribosomal protein S8 A388_00479 PF00347 Ribosomal protein L6 A388_00480 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast A388_00481 PF03719 Ribosomal protein S5, C-terminal domain A388_00481 PF00333 Ribosomal protein S5, N-terminal domain A388_00482 PF00327 Ribosomal protein L30p/L7e A388_00483 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A A388_00484 PF00344 SecY translocase A388_00485 PF00444 Ribosomal protein L36 A388_00486 PF00416 Ribosomal protein S13/S18 A388_00487 PF00411 Ribosomal protein S11 A388_00488 PF00163 Ribosomal protein S4/S9 N-terminal domain A388_00488 PF01479 S4 domain A388_00489 PF01000 RNA polymerase Rpb3/RpoA insert domain A388_00489 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain A388_00489 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain A388_00490 PF01196 Ribosomal protein L17 A388_00491 PF00743 Flavin-binding monooxygenase-like A388_00492 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00492 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00492 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00493 PF03937 Flavinator of succinate dehydrogenase A388_00500 PF09526 Probable metal-binding protein (DUF2387) A388_00501 PF01432 Peptidase family M3 A388_00502 PF00575 S1 RNA binding domain A388_00502 PF08206 Ribonuclease B OB domain A388_00502 PF00773 RNB domain A388_00502 PF17876 Cold shock domain A388_00502 PF08461 Ribonuclease R winged-helix domain A388_00507 PF13936 Helix-turn-helix domain A388_00507 PF00665 Integrase core domain A388_00512 PF01557 Fumarylacetoacetate (FAA) hydrolase family A388_00513 PF12833 Helix-turn-helix domain A388_00514 PF00892 EamA-like transporter family A388_00515 PF03631 Virulence factor BrkB A388_00516 PF03358 NADPH-dependent FMN reductase A388_00521 PF02130 Uncharacterized protein family UPF0054 A388_00522 PF02562 PhoH-like protein A388_00523 PF01938 TRAM domain A388_00523 PF00919 Uncharacterized protein family UPF0004 A388_00523 PF04055 Radical SAM superfamily A388_00524 PF10145 Phage-related minor tail protein A388_00524 PF01464 Transglycosylase SLT domain A388_00524 PF01551 Peptidase family M23 A388_00526 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain A388_00526 PF00056 lactate/malate dehydrogenase, NAD binding domain A388_00530 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ A388_00531 PF01066 CDP-alcohol phosphatidyltransferase A388_00537 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00537 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00537 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00538 PF17932 Tetracyclin repressor-like, C-terminal domain A388_00538 PF00440 Bacterial regulatory proteins, tetR family A388_00541 PF01039 Carboxyl transferase domain A388_00542 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00542 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00542 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00544 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A388_00544 PF00364 Biotin-requiring enzyme A388_00544 PF00289 Biotin carboxylase, N-terminal domain A388_00544 PF02785 Biotin carboxylase C-terminal domain A388_00546 PF04386 Stringent starvation protein B A388_00547 PF00043 Glutathione S-transferase, C-terminal domain A388_00547 PF13417 Glutathione S-transferase, N-terminal domain A388_00548 PF00380 Ribosomal protein S9/S16 A388_00549 PF00572 Ribosomal protein L13 A388_00550 PF04166 Pyridoxal phosphate biosynthetic protein PdxA A388_00551 PF00398 Ribosomal RNA adenine dimethylase A388_00552 PF00149 Calcineurin-like phosphoesterase A388_00556 PF16360 GTP-binding GTPase Middle Region A388_00556 PF01926 50S ribosome-binding GTPase A388_00556 PF13167 GTP-binding GTPase N-terminal A388_00558 PF13091 PLD-like domain A388_00559 PF00149 Calcineurin-like phosphoesterase A388_00559 PF10518 TAT (twin-arginine translocation) pathway signal sequence A388_00560 PF00691 OmpA family A388_00560 PF01389 OmpA-like transmembrane domain A388_00561 PF17152 Periplasmic sensor domain A388_00561 PF00990 Diguanylate cyclase, GGDEF domain A388_00565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A388_00565 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_00567 PF00753 Metallo-beta-lactamase superfamily A388_00567 PF04273 Putative phosphatase (DUF442) A388_00568 PF00561 alpha/beta hydrolase fold A388_00569 PF00085 Thioredoxin A388_00570 PF03061 Thioesterase superfamily A388_00572 PF04461 Protein of unknown function (DUF520) A388_00574 PF01266 FAD dependent oxidoreductase A388_00574 PF05430 S-adenosyl-L-methionine-dependent methyltransferase A388_00576 PF03795 YCII-related domain A388_00577 PF04279 Intracellular septation protein A A388_00578 PF02811 PHP domain A388_00579 PF01062 Bestrophin, RFP-TM, chloride channel A388_00580 PF04002 RadC-like JAB domain A388_00581 PF02441 Flavoprotein A388_00581 PF04127 DNA / pantothenate metabolism flavoprotein A388_00582 PF02355 Protein export membrane protein A388_00582 PF07549 SecD/SecF GG Motif A388_00583 PF07549 SecD/SecF GG Motif A388_00583 PF13721 SecD export protein N-terminal TM region A388_00583 PF02355 Protein export membrane protein A388_00584 PF02699 Preprotein translocase subunit A388_00585 PF01702 Queuine tRNA-ribosyltransferase A388_00588 PF02547 Queuosine biosynthesis protein A388_00594 PF00436 Single-strand binding protein family A388_00624 PF01510 N-acetylmuramoyl-L-alanine amidase A388_00624 PF01471 Putative peptidoglycan binding domain A388_00634 PF07689 KaiB domain A388_00634 PF00512 His Kinase A (phospho-acceptor) domain A388_00634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_00635 PF08335 GlnD PII-uridylyltransferase A388_00635 PF03710 Glutamate-ammonia ligase adenylyltransferase A388_00636 PF01063 Amino-transferase class IV A388_00639 PF01522 Polysaccharide deacetylase A388_00640 PF00535 Glycosyl transferase family 2 A388_00641 PF00534 Glycosyl transferases group 1 A388_00641 PF13439 Glycosyltransferase Family 4 A388_00646 PF11380 Stealth protein CR2, conserved region 2 A388_00646 PF17101 Stealth protein CR1, conserved region 1 A388_00646 PF17102 Stealth protein CR3, conserved region 3 A388_00647 PF01336 OB-fold nucleic acid binding domain A388_00647 PF02938 GAD domain A388_00647 PF00152 tRNA synthetases class II (D, K and N) A388_00649 PF00593 TonB dependent receptor A388_00649 PF07715 TonB-dependent Receptor Plug Domain A388_00653 PF06146 Phosphate-starvation-inducible E A388_00654 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00654 PF12806 Acetyl-CoA dehydrogenase C-terminal like A388_00654 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00654 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_00655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_00655 PF02770 Acyl-CoA dehydrogenase, middle domain A388_00655 PF12806 Acetyl-CoA dehydrogenase C-terminal like A388_00657 PF00512 His Kinase A (phospho-acceptor) domain A388_00657 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_00657 PF00672 HAMP domain A388_00658 PF00486 Transcriptional regulatory protein, C terminal A388_00658 PF00072 Response regulator receiver domain A388_00659 PF02696 Uncharacterized ACR, YdiU/UPF0061 family A388_00663 PF01923 Cobalamin adenosyltransferase A388_00664 PF07715 TonB-dependent Receptor Plug Domain A388_00664 PF00593 TonB dependent receptor A388_00665 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase A388_00666 PF00291 Pyridoxal-phosphate dependent enzyme A388_00671 PF00290 Tryptophan synthase alpha chain A388_00672 PF01039 Carboxyl transferase domain A388_00673 PF02875 Mur ligase family, glutamate ligase domain A388_00673 PF08245 Mur ligase middle domain A388_00676 PF00753 Metallo-beta-lactamase superfamily A388_00677 PF00578 AhpC/TSA family A388_00677 PF10417 C-terminal domain of 1-Cys peroxiredoxin A388_00678 PF07517 SecA DEAD-like domain A388_00678 PF02810 SEC-C motif A388_00678 PF01043 SecA preprotein cross-linking domain A388_00678 PF07516 SecA Wing and Scaffold domain A388_00680 PF07690 Major Facilitator Superfamily A388_00680 PF00083 Sugar (and other) transporter A388_00681 PF03006 Haemolysin-III related A388_00686 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A388_00686 PF00378 Enoyl-CoA hydratase/isomerase A388_00686 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A388_00687 PF00108 Thiolase, N-terminal domain A388_00687 PF02803 Thiolase, C-terminal domain A388_00688 PF02311 AraC-like ligand binding domain A388_00688 PF12833 Helix-turn-helix domain A388_00689 PF02515 CoA-transferase family III A388_00690 PF04966 Carbohydrate-selective porin, OprB family A388_00691 PF01011 PQQ enzyme repeat A388_00692 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A388_00692 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A388_00694 PF00893 Small Multidrug Resistance protein A388_00696 PF00108 Thiolase, N-terminal domain A388_00696 PF02803 Thiolase, C-terminal domain A388_00698 PF13505 Outer membrane protein beta-barrel domain A388_00698 PF00691 OmpA family A388_00700 PF01139 tRNA-splicing ligase RtcB A388_00701 PF00324 Amino acid permease A388_00702 PF08468 Methyltransferase small domain N-terminal A388_00702 PF05175 Methyltransferase small domain A388_00703 PF00860 Permease family A388_00705 PF01741 Large-conductance mechanosensitive channel, MscL A388_00708 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain A388_00708 PF06827 Zinc finger found in FPG and IleRS A388_00708 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain A388_00709 PF02245 Methylpurine-DNA glycosylase (MPG) A388_00710 PF07715 TonB-dependent Receptor Plug Domain A388_00710 PF00593 TonB dependent receptor A388_00711 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_00714 PF13098 Thioredoxin-like domain A388_00714 PF10411 Disulfide bond isomerase protein N-terminus A388_00715 PF01571 Aminomethyltransferase folate-binding domain A388_00717 PF04343 Protein of unknown function, DUF488 A388_00718 PF03831 PhnA domain A388_00718 PF08274 PhnA Zinc-Ribbon A388_00719 PF07411 Domain of unknown function (DUF1508) A388_00720 PF04073 Aminoacyl-tRNA editing domain A388_00720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A388_00720 PF03129 Anticodon binding domain A388_00721 PF00873 AcrB/AcrD/AcrF family A388_00724 PF00072 Response regulator receiver domain A388_00725 PF00072 Response regulator receiver domain A388_00726 PF01584 CheW-like domain A388_00727 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term A388_00727 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain A388_00728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_00728 PF01584 CheW-like domain A388_00728 PF00072 Response regulator receiver domain A388_00728 PF01627 Hpt domain A388_00730 PF04055 Radical SAM superfamily A388_00730 PF06969 HemN C-terminal domain A388_00732 PF01546 Peptidase family M20/M25/M40 A388_00732 PF07687 Peptidase dimerisation domain A388_00733 PF08085 Entericidin EcnA/B family A388_00735 PF04304 Protein of unknown function (DUF454) A388_00736 PF17969 L,D-transpeptidase C-terminal domain A388_00736 PF03734 L,D-transpeptidase catalytic domain A388_00744 PF00258 Flavodoxin A388_00744 PF00667 FAD binding domain A388_00744 PF00175 Oxidoreductase NAD-binding domain A388_00746 PF12805 FUSC-like inner membrane protein yccS A388_00747 PF07690 Major Facilitator Superfamily A388_00748 PF00881 Nitroreductase family A388_00750 PF01235 Sodium:alanine symporter family A388_00751 PF01734 Patatin-like phospholipase A388_00752 PF00291 Pyridoxal-phosphate dependent enzyme A388_00752 PF13291 ACT domain A388_00753 PF05992 SbmA/BacA-like family A388_00758 PF02637 GatB domain A388_00758 PF02934 GatB/GatE catalytic domain A388_00759 PF01425 Amidase A388_00760 PF02686 Glu-tRNAGln amidotransferase C subunit A388_00762 PF04085 rod shape-determining protein MreC A388_00763 PF04093 rod shape-determining protein MreD A388_00764 PF02545 Maf-like protein A388_00765 PF00575 S1 RNA binding domain A388_00765 PF10150 Ribonuclease E/G family A388_00767 PF06974 Protein of unknown function (DUF1298) A388_00767 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain A388_00768 PF01507 Phosphoadenosine phosphosulfate reductase family A388_00771 PF02525 Flavodoxin-like fold A388_00775 PF02673 Bacitracin resistance protein BacA A388_00776 PF12833 Helix-turn-helix domain A388_00776 PF06719 AraC-type transcriptional regulator N-terminus A388_00777 PF14765 Polyketide synthase dehydratase A388_00777 PF00550 Phosphopantetheine attachment site A388_00777 PF00698 Acyl transferase domain A388_00777 PF16197 Ketoacyl-synthetase C-terminal extension A388_00777 PF09277 Erythronolide synthase, docking A388_00777 PF08990 Erythronolide synthase docking A388_00777 PF08240 Alcohol dehydrogenase GroES-like domain A388_00777 PF00109 Beta-ketoacyl synthase, N-terminal domain A388_00777 PF02801 Beta-ketoacyl synthase, C-terminal domain A388_00777 PF08659 KR domain A388_00778 PF01965 DJ-1/PfpI family A388_00789 PF02384 N-6 DNA Methylase A388_00789 PF12161 HsdM N-terminal domain A388_00796 PF03796 DnaB-like helicase C terminal domain A388_00796 PF00772 DnaB-like helicase N terminal domain A388_00840 PF01551 Peptidase family M23 A388_00840 PF10145 Phage-related minor tail protein A388_00840 PF01464 Transglycosylase SLT domain A388_00852 PF13356 Arm DNA-binding domain A388_00852 PF00589 Phage integrase family A388_00854 PF00324 Amino acid permease A388_00855 PF04303 PrpF protein A388_00856 PF00348 Polyprenyl synthetase A388_00857 PF04237 YjbR A388_00858 PF01145 SPFH domain / Band 7 family A388_00860 PF01734 Patatin-like phospholipase A388_00864 PF08019 Phosphoethanolamine transferase EptA/EptB A388_00864 PF00884 Sulfatase A388_00865 PF00486 Transcriptional regulatory protein, C terminal A388_00865 PF00072 Response regulator receiver domain A388_00866 PF08521 Two-component sensor kinase N-terminal A388_00866 PF00512 His Kinase A (phospho-acceptor) domain A388_00866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_00868 PF00909 Ammonium Transporter Family A388_00869 PF03466 LysR substrate binding domain A388_00869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_00873 PF10458 Valyl tRNA synthetase tRNA binding arm A388_00873 PF00133 tRNA synthetases class I (I, L, M and V) A388_00873 PF08264 Anticodon-binding domain of tRNA A388_00877 PF01906 Putative heavy-metal-binding A388_00878 PF01906 Putative heavy-metal-binding A388_00879 PF02321 Outer membrane efflux protein A388_00880 PF00665 Integrase core domain A388_00880 PF13333 Integrase core domain A388_00880 PF13276 HTH-like domain A388_00881 PF01527 Transposase A388_00882 PF00873 AcrB/AcrD/AcrF family A388_00883 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A388_00883 PF00529 HlyD membrane-fusion protein of T1SS A388_00884 PF01569 PAP2 superfamily A388_00886 PF00348 Polyprenyl synthetase A388_00887 PF00829 Ribosomal prokaryotic L21 protein A388_00888 PF01016 Ribosomal L27 protein A388_00889 PF03548 Outer membrane lipoprotein carrier protein LolA A388_00891 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A388_00891 PF02403 Seryl-tRNA synthetase N-terminal domain A388_00892 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A388_00892 PF14824 Sirohaem biosynthesis protein central A388_00892 PF10414 Sirohaem synthase dimerisation region A388_00893 PF00588 SpoU rRNA Methylase family A388_00894 PF01638 HxlR-like helix-turn-helix A388_00895 PF03358 NADPH-dependent FMN reductase A388_00896 PF13520 Amino acid permease A388_00897 PF00465 Iron-containing alcohol dehydrogenase A388_00899 PF03099 Biotin/lipoate A/B protein ligase family A388_00900 PF04359 Protein of unknown function (DUF493) A388_00901 PF04545 Sigma-70, region 4 A388_00901 PF04542 Sigma-70 region 2 A388_00901 PF04546 Sigma-70, non-essential region A388_00901 PF00140 Sigma-70 factor, region 1.2 A388_00901 PF03979 Sigma-70 factor, region 1.1 A388_00901 PF04539 Sigma-70 region 3 A388_00906 PF00285 Citrate synthase, C-terminal domain A388_00907 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A388_00908 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit A388_00909 PF00890 FAD binding domain A388_00909 PF02910 Fumarate reductase flavoprotein C-term A388_00910 PF13085 2Fe-2S iron-sulfur cluster binding domain A388_00911 PF00676 Dehydrogenase E1 component A388_00911 PF02779 Transketolase, pyrimidine binding domain A388_00911 PF16870 2-oxoglutarate dehydrogenase C-terminal A388_00911 PF16078 2-oxoglutarate dehydrogenase N-terminus A388_00912 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A388_00912 PF00364 Biotin-requiring enzyme A388_00912 PF02817 e3 binding domain A388_00913 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_00913 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A388_00914 PF08442 ATP-grasp domain A388_00914 PF00549 CoA-ligase A388_00915 PF02629 CoA binding domain A388_00915 PF00549 CoA-ligase A388_00918 PF00579 tRNA synthetases class I (W and Y) A388_00919 PF05661 Protein of unknown function (DUF808) A388_00920 PF04228 Putative neutral zinc metallopeptidase A388_00921 PF00999 Sodium/hydrogen exchanger family A388_00922 PF13737 Transposase DDE domain A388_00925 PF09587 Bacterial capsule synthesis protein PGA_cap A388_00927 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A388_00928 PF00582 Universal stress protein family A388_00929 PF00132 Bacterial transferase hexapeptide (six repeats) A388_00930 PF03449 Transcription elongation factor, N-terminal A388_00930 PF01272 Transcription elongation factor, GreA/GreB, C-term A388_00931 PF02142 MGS-like domain A388_00931 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A388_00931 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A388_00932 PF00117 Glutamine amidotransferase class-I A388_00932 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain A388_00935 PF01985 CRS1 / YhbY (CRM) domain A388_00936 PF01728 FtsJ-like methyltransferase A388_00937 PF06480 FtsH Extracellular A388_00937 PF17862 AAA+ lid domain A388_00937 PF00004 ATPase family associated with various cellular activities (AAA) A388_00937 PF01434 Peptidase family M41 A388_00938 PF00809 Pterin binding enzyme A388_00942 PF16655 PhoD-like phosphatase, N-terminal domain A388_00942 PF09423 PhoD-like phosphatase A388_00945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain A388_00945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain A388_00948 PF00083 Sugar (and other) transporter A388_00949 PF00370 FGGY family of carbohydrate kinases, N-terminal domain A388_00949 PF02782 FGGY family of carbohydrate kinases, C-terminal domain A388_00950 PF16901 C-terminal domain of alpha-glycerophosphate oxidase A388_00950 PF01266 FAD dependent oxidoreductase A388_00951 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain A388_00951 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain A388_00952 PF00781 Diacylglycerol kinase catalytic domain A388_00953 PF00149 Calcineurin-like phosphoesterase A388_00955 PF00166 Chaperonin 10 Kd subunit A388_00956 PF00118 TCP-1/cpn60 chaperonin family A388_00957 PF01219 Prokaryotic diacylglycerol kinase A388_00958 PF00753 Metallo-beta-lactamase superfamily A388_00959 PF03009 Glycerophosphoryl diester phosphodiesterase family A388_00960 PF00873 AcrB/AcrD/AcrF family A388_00962 PF01435 Peptidase family M48 A388_00963 PF01464 Transglycosylase SLT domain A388_00964 PF01171 PP-loop family A388_00966 PF00497 Bacterial extracellular solute-binding proteins, family 3 A388_00966 PF01464 Transglycosylase SLT domain A388_00967 PF01272 Transcription elongation factor, GreA/GreB, C-term A388_00967 PF03449 Transcription elongation factor, N-terminal A388_00970 PF00975 Thioesterase domain A388_00970 PF13193 AMP-binding enzyme C-terminal domain A388_00970 PF00668 Condensation domain A388_00970 PF00550 Phosphopantetheine attachment site A388_00970 PF00501 AMP-binding enzyme A388_00974 PF01527 Transposase A388_00979 PF00881 Nitroreductase family A388_00982 PF02595 Glycerate kinase family A388_00983 PF00384 Molybdopterin oxidoreductase A388_00984 PF02634 FdhD/NarQ family A388_00985 PF06803 Protein of unknown function (DUF1232) A388_00986 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A388_00986 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A388_00986 PF11890 Domain of unknown function (DUF3410) A388_00987 PF00152 tRNA synthetases class II (D, K and N) A388_00989 PF18073 Rubredoxin metal binding domain A388_00990 PF00324 Amino acid permease A388_00992 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain A388_00992 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain A388_00993 PF01678 Diaminopimelate epimerase A388_00994 PF00561 alpha/beta hydrolase fold A388_00995 PF01810 LysE type translocator A388_00996 PF00589 Phage integrase family A388_00996 PF02899 Phage integrase, N-terminal SAM-like domain A388_00997 PF01012 Electron transfer flavoprotein domain A388_00998 PF00766 Electron transfer flavoprotein FAD-binding domain A388_00998 PF01012 Electron transfer flavoprotein domain A388_00999 PF03989 DNA gyrase C-terminal domain, beta-propeller A388_00999 PF00521 DNA gyrase/topoisomerase IV, subunit A A388_01002 PF00535 Glycosyl transferase family 2 A388_01006 PF13533 Biotin-lipoyl like A388_01008 PF00266 Aminotransferase class-V A388_01011 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 A388_01013 PF12704 MacB-like periplasmic core domain A388_01013 PF02687 FtsX-like permease family A388_01014 PF00005 ABC transporter A388_01015 PF03772 Competence protein A388_01015 PF13567 Domain of unknown function (DUF4131) A388_01015 PF00753 Metallo-beta-lactamase superfamily A388_01017 PF06965 Na+/H+ antiporter 1 A388_01017 PF01343 Peptidase family S49 A388_01018 PF12697 Alpha/beta hydrolase family A388_01019 PF00551 Formyl transferase A388_01020 PF02769 AIR synthase related protein, C-terminal domain A388_01020 PF00586 AIR synthase related protein, N-terminal domain A388_01021 PF01594 AI-2E family transporter A388_01022 PF08299 Bacterial dnaA protein helix-turn-helix A388_01022 PF11638 DnaA N-terminal domain A388_01022 PF00308 Bacterial dnaA protein A388_01028 PF00588 SpoU rRNA Methylase family A388_01028 PF08032 RNA 2'-O ribose methyltransferase substrate binding A388_01029 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain A388_01031 PF00691 OmpA family A388_01032 PF07676 WD40-like Beta Propeller Repeat A388_01032 PF04052 TolB amino-terminal domain A388_01034 PF02472 Biopolymer transport protein ExbD/TolR A388_01035 PF01618 MotA/TolQ/ExbB proton channel family A388_01036 PF03061 Thioesterase superfamily A388_01037 PF07687 Peptidase dimerisation domain A388_01037 PF01546 Peptidase family M20/M25/M40 A388_01038 PF05491 RuvB C-terminal winged helix domain A388_01038 PF17864 RuvB AAA lid domain A388_01038 PF05496 Holliday junction DNA helicase RuvB P-loop domain A388_01039 PF07499 RuvA, C-terminal domain A388_01039 PF01330 RuvA N terminal domain A388_01040 PF01966 HD domain A388_01041 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain A388_01041 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal A388_01041 PF02769 AIR synthase related protein, C-terminal domain A388_01042 PF07690 Major Facilitator Superfamily A388_01043 PF01784 NIF3 (NGG1p interacting factor 3) A388_01044 PF00378 Enoyl-CoA hydratase/isomerase A388_01045 PF00293 NUDIX domain A388_01045 PF01467 Cytidylyltransferase-like A388_01047 PF00578 AhpC/TSA family A388_01050 PF06508 Queuosine biosynthesis protein QueC A388_01052 PF00132 Bacterial transferase hexapeptide (six repeats) A388_01052 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal A388_01052 PF14602 Hexapeptide repeat of succinyl-transferase A388_01054 PF03466 LysR substrate binding domain A388_01054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01055 PF12857 TOBE-like domain A388_01055 PF00005 ABC transporter A388_01056 PF00528 Binding-protein-dependent transport system inner membrane component A388_01057 PF00528 Binding-protein-dependent transport system inner membrane component A388_01060 PF01063 Amino-transferase class IV A388_01061 PF02618 YceG-like family A388_01062 PF02223 Thymidylate kinase A388_01064 PF02910 Fumarate reductase flavoprotein C-term A388_01064 PF00890 FAD binding domain A388_01065 PF13180 PDZ domain A388_01067 PF03144 Elongation factor Tu domain 2 A388_01067 PF06421 GTP-binding protein LepA C-terminus A388_01067 PF00679 Elongation factor G C-terminus A388_01067 PF00009 Elongation factor Tu GTP binding domain A388_01068 PF10502 Signal peptidase, peptidase S26 A388_01070 PF00035 Double-stranded RNA binding motif A388_01070 PF14622 Ribonuclease-III-like A388_01071 PF07650 KH domain A388_01071 PF01926 50S ribosome-binding GTPase A388_01073 PF02565 Recombination protein O C terminal A388_01073 PF11967 Recombination protein O N terminal A388_01074 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ A388_01075 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) A388_01076 PF00106 short chain dehydrogenase A388_01083 PF17151 Periplasmic sensor domain A388_01083 PF00990 Diguanylate cyclase, GGDEF domain A388_01085 PF04851 Type III restriction enzyme, res subunit A388_01085 PF02151 UvrB/uvrC motif A388_01085 PF12344 Ultra-violet resistance protein B A388_01085 PF00271 Helicase conserved C-terminal domain A388_01085 PF17757 UvrB interaction domain A388_01087 PF00892 EamA-like transporter family A388_01088 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A388_01088 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A388_01091 PF01018 GTP1/OBG A388_01091 PF01926 50S ribosome-binding GTPase A388_01092 PF01472 PUA domain A388_01092 PF00696 Amino acid kinase family A388_01094 PF07759 Protein of unknown function (DUF1615) A388_01095 PF01207 Dihydrouridine synthase (Dus) A388_01096 PF03060 Nitronate monooxygenase A388_01099 PF02350 UDP-N-acetylglucosamine 2-epimerase A388_01105 PF03441 FAD binding domain of DNA photolyase A388_01105 PF00875 DNA photolyase A388_01106 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A388_01107 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01108 PF00768 D-alanyl-D-alanine carboxypeptidase A388_01108 PF07943 Penicillin-binding protein 5, C-terminal domain A388_01110 PF03971 Monomeric isocitrate dehydrogenase A388_01111 PF00849 RNA pseudouridylate synthase A388_01112 PF00180 Isocitrate/isopropylmalate dehydrogenase A388_01116 PF06779 Uncharacterised MFS-type transporter YbfB A388_01117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01117 PF03466 LysR substrate binding domain A388_01119 PF02567 Phenazine biosynthesis-like protein A388_01120 PF05193 Peptidase M16 inactive domain A388_01120 PF00675 Insulinase (Peptidase family M16) A388_01125 PF01867 CRISPR associated protein Cas1 A388_01127 PF09611 CRISPR-associated protein (Cas_Csy1) A388_01128 PF09614 CRISPR-associated protein (Cas_Csy2) A388_01129 PF09615 CRISPR-associated protein (Cas_Csy3) A388_01131 PF02581 Thiamine monophosphate synthase A388_01132 PF00202 Aminotransferase class-III A388_01134 PF00849 RNA pseudouridylate synthase A388_01135 PF00176 SNF2 family N-terminal domain A388_01135 PF00271 Helicase conserved C-terminal domain A388_01135 PF12137 RNA polymerase recycling family C-terminal A388_01135 PF18337 RapA N-terminal Tudor like domain A388_01135 PF18339 RapA N-terminal Tudor like domain 1 A388_01137 PF00440 Bacterial regulatory proteins, tetR family A388_01138 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_01138 PF00970 Oxidoreductase FAD-binding domain A388_01138 PF00175 Oxidoreductase NAD-binding domain A388_01139 PF00487 Fatty acid desaturase A388_01141 PF17754 MftR C-terminal domain A388_01141 PF00440 Bacterial regulatory proteins, tetR family A388_01143 PF00202 Aminotransferase class-III A388_01144 PF00282 Pyridoxal-dependent decarboxylase conserved domain A388_01145 PF00171 Aldehyde dehydrogenase family A388_01146 PF01037 Lrp/AsnC ligand binding domain A388_01147 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A388_01147 PF00205 Thiamine pyrophosphate enzyme, central domain A388_01147 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A388_01148 PF00324 Amino acid permease A388_01149 PF12849 PBP superfamily domain A388_01150 PF00528 Binding-protein-dependent transport system inner membrane component A388_01151 PF00528 Binding-protein-dependent transport system inner membrane component A388_01152 PF00005 ABC transporter A388_01153 PF01343 Peptidase family S49 A388_01153 PF08496 Peptidase family S49 N-terminal A388_01156 PF00206 Lyase A388_01156 PF08328 Adenylosuccinate lyase C-terminal A388_01157 PF04356 Protein of unknown function (DUF489) A388_01159 PF13344 Haloacid dehalogenase-like hydrolase A388_01159 PF00293 NUDIX domain A388_01160 PF00132 Bacterial transferase hexapeptide (six repeats) A388_01161 PF07943 Penicillin-binding protein 5, C-terminal domain A388_01161 PF00768 D-alanyl-D-alanine carboxypeptidase A388_01164 PF01975 Survival protein SurE A388_01165 PF01551 Peptidase family M23 A388_01165 PF01476 LysM domain A388_01166 PF03466 LysR substrate binding domain A388_01166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01167 PF05362 Lon protease (S16) C-terminal proteolytic domain A388_01167 PF13654 AAA domain A388_01168 PF07690 Major Facilitator Superfamily A388_01169 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A388_01170 PF13593 SBF-like CPA transporter family (DUF4137) A388_01171 PF01197 Ribosomal protein L31 A388_01172 PF12792 CSS motif domain associated with EAL A388_01172 PF00563 EAL domain A388_01174 PF04055 Radical SAM superfamily A388_01175 PF08207 Elongation factor P (EF-P) KOW-like domain A388_01175 PF09285 Elongation factor P, C-terminal A388_01175 PF01132 Elongation factor P (EF-P) OB domain A388_01176 PF13722 5TM C-terminal transporter carbon starvation CstA A388_01176 PF02554 Carbon starvation protein CstA A388_01177 PF04328 Selenoprotein, putative A388_01179 PF03466 LysR substrate binding domain A388_01179 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01180 PF00557 Metallopeptidase family M24 A388_01181 PF02028 BCCT, betaine/carnitine/choline family transporter A388_01182 PF02028 BCCT, betaine/carnitine/choline family transporter A388_01183 PF00355 Rieske [2Fe-2S] domain A388_01183 PF00848 Ring hydroxylating alpha subunit (catalytic domain) A388_01185 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01185 PF18113 Rubredoxin binding C-terminal domain A388_01186 PF05430 S-adenosyl-L-methionine-dependent methyltransferase A388_01186 PF01266 FAD dependent oxidoreductase A388_01190 PF00892 EamA-like transporter family A388_01192 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system A388_01196 PF13737 Transposase DDE domain A388_01198 PF02678 Pirin A388_01198 PF17954 Quercetinase C-terminal cupin domain A388_01199 PF00291 Pyridoxal-phosphate dependent enzyme A388_01200 PF13309 HTH domain A388_01200 PF08348 YheO-like PAS domain A388_01202 PF13193 AMP-binding enzyme C-terminal domain A388_01202 PF00501 AMP-binding enzyme A388_01202 PF00668 Condensation domain A388_01202 PF00550 Phosphopantetheine attachment site A388_01203 PF00668 Condensation domain A388_01203 PF13193 AMP-binding enzyme C-terminal domain A388_01203 PF00501 AMP-binding enzyme A388_01203 PF00975 Thioesterase domain A388_01203 PF00550 Phosphopantetheine attachment site A388_01206 PF01032 FecCD transport family A388_01207 PF01032 FecCD transport family A388_01208 PF00005 ABC transporter A388_01209 PF01497 Periplasmic binding protein A388_01210 PF07715 TonB-dependent Receptor Plug Domain A388_01210 PF00593 TonB dependent receptor A388_01211 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) A388_01212 PF00501 AMP-binding enzyme A388_01212 PF00668 Condensation domain A388_01212 PF00550 Phosphopantetheine attachment site A388_01213 PF00501 AMP-binding enzyme A388_01213 PF13193 AMP-binding enzyme C-terminal domain A388_01214 PF00550 Phosphopantetheine attachment site A388_01214 PF00857 Isochorismatase family A388_01215 PF00282 Pyridoxal-dependent decarboxylase conserved domain A388_01217 PF00664 ABC transporter transmembrane region A388_01217 PF00005 ABC transporter A388_01218 PF00664 ABC transporter transmembrane region A388_01218 PF00005 ABC transporter A388_01219 PF00975 Thioesterase domain A388_01221 PF00425 chorismate binding enzyme A388_01223 PF01208 Uroporphyrinogen decarboxylase (URO-D) A388_01224 PF05675 Protein of unknown function (DUF817) A388_01227 PF00144 Beta-lactamase A388_01228 PF00665 Integrase core domain A388_01228 PF13936 Helix-turn-helix domain A388_01230 PF01799 [2Fe-2S] binding domain A388_01230 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_01231 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A388_01231 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase A388_01234 PF00218 Indole-3-glycerol phosphate synthase A388_01235 PF02885 Glycosyl transferase family, helical bundle domain A388_01235 PF00591 Glycosyl transferase family, a/b domain A388_01236 PF00593 TonB dependent receptor A388_01236 PF07715 TonB-dependent Receptor Plug Domain A388_01237 PF01433 Peptidase family M1 domain A388_01237 PF11838 ERAP1-like C-terminal domain A388_01238 PF00117 Glutamine amidotransferase class-I A388_01240 PF00854 POT family A388_01242 PF04345 Chorismate lyase A388_01243 PF01040 UbiA prenyltransferase family A388_01250 PF02777 Iron/manganese superoxide dismutases, C-terminal domain A388_01250 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain A388_01251 PF01784 NIF3 (NGG1p interacting factor 3) A388_01252 PF13180 PDZ domain A388_01253 PF12627 Probable RNA and SrmB- binding site of polymerase A A388_01253 PF01743 Poly A polymerase head domain A388_01254 PF00390 Malic enzyme, N-terminal domain A388_01254 PF03949 Malic enzyme, NAD binding domain A388_01254 PF01515 Phosphate acetyl/butaryl transferase A388_01255 PF00563 EAL domain A388_01255 PF03707 Bacterial signalling protein N terminal repeat A388_01255 PF00990 Diguanylate cyclase, GGDEF domain A388_01256 PF04452 RNA methyltransferase A388_01257 PF02219 Methylenetetrahydrofolate reductase A388_01258 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain A388_01258 PF05221 S-adenosyl-L-homocysteine hydrolase A388_01261 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_01261 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_01261 PF09317 Domain of unknown function (DUF1974) A388_01262 PF04055 Radical SAM superfamily A388_01263 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01263 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A388_01266 PF07690 Major Facilitator Superfamily A388_01269 PF00557 Metallopeptidase family M24 A388_01270 PF00318 Ribosomal protein S2 A388_01271 PF00889 Elongation factor TS A388_01273 PF12833 Helix-turn-helix domain A388_01277 PF03330 Lytic transglycolase A388_01277 PF05036 Sporulation related domain A388_01278 PF13406 Transglycosylase SLT domain A388_01279 PF01098 Cell cycle protein A388_01281 PF14489 QueF-like protein A388_01281 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term A388_01282 PF01061 ABC-2 type transporter A388_01283 PF00005 ABC transporter A388_01284 PF00589 Phage integrase family A388_01297 PF12161 HsdM N-terminal domain A388_01297 PF02384 N-6 DNA Methylase A388_01305 PF03796 DnaB-like helicase C terminal domain A388_01305 PF00772 DnaB-like helicase N terminal domain A388_01347 PF10548 P22AR C-terminal domain A388_01347 PF08346 AntA/AntB antirepressor A388_01368 PF00464 Serine hydroxymethyltransferase A388_01369 PF02321 Outer membrane efflux protein A388_01370 PF00873 AcrB/AcrD/AcrF family A388_01371 PF13533 Biotin-lipoyl like A388_01372 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01372 PF03466 LysR substrate binding domain A388_01373 PF00497 Bacterial extracellular solute-binding proteins, family 3 A388_01374 PF00528 Binding-protein-dependent transport system inner membrane component A388_01375 PF00528 Binding-protein-dependent transport system inner membrane component A388_01376 PF00005 ABC transporter A388_01377 PF00893 Small Multidrug Resistance protein A388_01378 PF00037 4Fe-4S binding domain A388_01380 PF00155 Aminotransferase class I and II A388_01380 PF00392 Bacterial regulatory proteins, gntR family A388_01381 PF02567 Phenazine biosynthesis-like protein A388_01382 PF00175 Oxidoreductase NAD-binding domain A388_01382 PF00970 Oxidoreductase FAD-binding domain A388_01383 PF18389 TrmO C-terminal domain A388_01383 PF01980 tRNA-methyltransferase O A388_01385 PF00437 Type II/IV secretion system protein A388_01387 PF00072 Response regulator receiver domain A388_01387 PF00486 Transcriptional regulatory protein, C terminal A388_01388 PF00512 His Kinase A (phospho-acceptor) domain A388_01388 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_01388 PF08521 Two-component sensor kinase N-terminal A388_01390 PF00293 NUDIX domain A388_01392 PF00912 Transglycosylase A388_01392 PF00905 Penicillin binding protein transpeptidase domain A388_01392 PF14814 Bifunctional transglycosylase second domain A388_01393 PF01513 ATP-NAD kinase A388_01394 PF07023 Protein of unknown function (DUF1315) A388_01395 PF00591 Glycosyl transferase family, a/b domain A388_01395 PF02885 Glycosyl transferase family, helical bundle domain A388_01396 PF00375 Sodium:dicarboxylate symporter family A388_01397 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_01397 PF02770 Acyl-CoA dehydrogenase, middle domain A388_01397 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_01398 PF00756 Putative esterase A388_01399 PF00800 Prephenate dehydratase A388_01399 PF01817 Chorismate mutase type II A388_01399 PF01842 ACT domain A388_01400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A388_01402 PF07687 Peptidase dimerisation domain A388_01402 PF01546 Peptidase family M20/M25/M40 A388_01403 PF00753 Metallo-beta-lactamase superfamily A388_01405 PF03883 Peroxide stress protein YaaA A388_01406 PF05690 Thiazole biosynthesis protein ThiG A388_01408 PF04241 Protein of unknown function (DUF423) A388_01409 PF00140 Sigma-70 factor, region 1.2 A388_01409 PF04545 Sigma-70, region 4 A388_01409 PF04542 Sigma-70 region 2 A388_01411 PF00313 'Cold-shock' DNA-binding domain A388_01412 PF00271 Helicase conserved C-terminal domain A388_01412 PF00270 DEAD/DEAH box helicase A388_01414 PF00881 Nitroreductase family A388_01415 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus A388_01415 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus A388_01419 PF01180 Dihydroorotate dehydrogenase A388_01420 PF02674 Colicin V production protein A388_01421 PF00156 Phosphoribosyl transferase domain A388_01424 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain A388_01424 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain A388_01425 PF01435 Peptidase family M48 A388_01426 PF09424 Yqey-like protein A388_01427 PF01165 Ribosomal protein S21 A388_01428 PF00814 Glycoprotease family A388_01432 PF00069 Protein kinase domain A388_01437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01437 PF03466 LysR substrate binding domain A388_01443 PF04403 Paraquat-inducible protein A A388_01444 PF02470 MlaD protein A388_01446 PF00576 HIUase/Transthyretin family A388_01448 PF00072 Response regulator receiver domain A388_01448 PF00486 Transcriptional regulatory protein, C terminal A388_01449 PF00672 HAMP domain A388_01449 PF00512 His Kinase A (phospho-acceptor) domain A388_01449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_01457 PF08521 Two-component sensor kinase N-terminal A388_01457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_01457 PF00512 His Kinase A (phospho-acceptor) domain A388_01458 PF00072 Response regulator receiver domain A388_01458 PF00486 Transcriptional regulatory protein, C terminal A388_01462 PF01177 Asp/Glu/Hydantoin racemase A388_01463 PF00892 EamA-like transporter family A388_01464 PF07995 Glucose / Sorbosone dehydrogenase A388_01468 PF00375 Sodium:dicarboxylate symporter family A388_01470 PF00753 Metallo-beta-lactamase superfamily A388_01470 PF16123 Hydroxyacylglutathione hydrolase C-terminus A388_01471 PF00528 Binding-protein-dependent transport system inner membrane component A388_01472 PF09383 NIL domain A388_01472 PF00005 ABC transporter A388_01473 PF03180 NLPA lipoprotein A388_01474 PF02843 Phosphoribosylglycinamide synthetase, C domain A388_01474 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain A388_01474 PF02844 Phosphoribosylglycinamide synthetase, N domain A388_01475 PF01808 AICARFT/IMPCHase bienzyme A388_01475 PF02142 MGS-like domain A388_01476 PF02954 Bacterial regulatory protein, Fis family A388_01480 PF01134 Glucose inhibited division protein A A388_01480 PF13932 GidA associated domain A388_01482 PF14403 Circularly permuted ATP-grasp type 2 A388_01484 PF01841 Transglutaminase-like superfamily A388_01484 PF08379 Bacterial transglutaminase-like N-terminal region A388_01486 PF01168 Alanine racemase, N-terminal domain A388_01486 PF00842 Alanine racemase, C-terminal domain A388_01487 PF03796 DnaB-like helicase C terminal domain A388_01487 PF00772 DnaB-like helicase N terminal domain A388_01488 PF01281 Ribosomal protein L9, N-terminal domain A388_01488 PF03948 Ribosomal protein L9, C-terminal domain A388_01489 PF01084 Ribosomal protein S18 A388_01490 PF01250 Ribosomal protein S6 A388_01491 PF01040 UbiA prenyltransferase family A388_01492 PF03626 Prokaryotic Cytochrome C oxidase subunit IV A388_01493 PF00510 Cytochrome c oxidase subunit III A388_01494 PF00115 Cytochrome C and Quinol oxidase polypeptide I A388_01495 PF06481 COX Aromatic Rich Motif A388_01495 PF00116 Cytochrome C oxidase subunit II, periplasmic domain A388_01497 PF02896 PEP-utilising enzyme, TIM barrel domain A388_01497 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain A388_01497 PF00391 PEP-utilising enzyme, mobile domain A388_01498 PF03618 Kinase/pyrophosphorylase A388_01500 PF14883 Hypothetical glycosyl hydrolase family 13 A388_01500 PF01522 Polysaccharide deacetylase A388_01501 PF00535 Glycosyl transferase family 2 A388_01502 PF13994 PgaD-like protein A388_01504 PF00296 Luciferase-like monooxygenase A388_01507 PF03466 LysR substrate binding domain A388_01507 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01509 PF00472 RF-1 domain A388_01509 PF03462 PCRF domain A388_01510 PF13847 Methyltransferase domain A388_01510 PF17827 PrmC N-terminal domain A388_01511 PF00528 Binding-protein-dependent transport system inner membrane component A388_01512 PF09084 NMT1/THI5 like A388_01513 PF12833 Helix-turn-helix domain A388_01514 PF00106 short chain dehydrogenase A388_01515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_01515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_01515 PF02770 Acyl-CoA dehydrogenase, middle domain A388_01516 PF13193 AMP-binding enzyme C-terminal domain A388_01516 PF00501 AMP-binding enzyme A388_01517 PF01613 Flavin reductase like domain A388_01518 PF00899 ThiF family A388_01519 PF03109 ABC1 family A388_01522 PF03814 Potassium-transporting ATPase A subunit A388_01524 PF02669 K+-transporting ATPase, c chain A388_01525 PF02702 Osmosensitive K+ channel His kinase sensor domain A388_01525 PF00512 His Kinase A (phospho-acceptor) domain A388_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_01525 PF13493 Domain of unknown function (DUF4118) A388_01526 PF00486 Transcriptional regulatory protein, C terminal A388_01526 PF00072 Response regulator receiver domain A388_01527 PF00120 Glutamine synthetase, catalytic domain A388_01529 PF03232 Ubiquinone biosynthesis protein COQ7 A388_01530 PF07690 Major Facilitator Superfamily A388_01531 PF01103 Surface antigen A388_01531 PF07244 Surface antigen variable number repeat A388_01531 PF17243 POTRA domain TamA domain 1 A388_01534 PF11791 Aconitate B N-terminal domain A388_01534 PF06434 Aconitate hydratase 2 N-terminus A388_01534 PF00330 Aconitase family (aconitate hydratase) A388_01536 PF00027 Cyclic nucleotide-binding domain A388_01536 PF00520 Ion transport protein A388_01537 PF07690 Major Facilitator Superfamily A388_01540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01540 PF03466 LysR substrate binding domain A388_01541 PF04284 Protein of unknown function (DUF441) A388_01543 PF01479 S4 domain A388_01543 PF00849 RNA pseudouridylate synthase A388_01546 PF01479 S4 domain A388_01546 PF00849 RNA pseudouridylate synthase A388_01547 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE A388_01548 PF08676 MutL C terminal dimerisation domain A388_01548 PF01119 DNA mismatch repair protein, C-terminal domain A388_01550 PF17209 Hfq protein A388_01552 PF00881 Nitroreductase family A388_01553 PF00149 Calcineurin-like phosphoesterase A388_01554 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD A388_01555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain A388_01555 PF00749 tRNA synthetases class I (E and Q), catalytic domain A388_01556 PF02540 NAD synthase A388_01556 PF00958 GMP synthase C terminal domain A388_01556 PF00117 Glutamine amidotransferase class-I A388_01557 PF05985 Ethanolamine ammonia-lyase light chain (EutC) A388_01558 PF06751 Ethanolamine ammonia lyase large subunit (EutB) A388_01559 PF13520 Amino acid permease A388_01560 PF00171 Aldehyde dehydrogenase family A388_01563 PF00465 Iron-containing alcohol dehydrogenase A388_01564 PF05970 PIF1-like helicase A388_01564 PF14493 Helix-turn-helix domain A388_01566 PF02110 Hydroxyethylthiazole kinase family A388_01569 PF11940 Domain of unknown function (DUF3458) Ig-like fold A388_01569 PF01433 Peptidase family M1 domain A388_01569 PF17432 Domain of unknown function (DUF3458_C) ARM repeats A388_01572 PF00577 Outer membrane usher protein A388_01572 PF13953 PapC C-terminal domain A388_01572 PF13954 PapC N-terminal domain A388_01577 PF01817 Chorismate mutase type II A388_01578 PF01037 Lrp/AsnC ligand binding domain A388_01580 PF02224 Cytidylate kinase A388_01582 PF00665 Integrase core domain A388_01582 PF13936 Helix-turn-helix domain A388_01584 PF00440 Bacterial regulatory proteins, tetR family A388_01585 PF07715 TonB-dependent Receptor Plug Domain A388_01585 PF00593 TonB dependent receptor A388_01586 PF00924 Mechanosensitive ion channel A388_01592 PF07715 TonB-dependent Receptor Plug Domain A388_01592 PF00593 TonB dependent receptor A388_01596 PF12848 ABC transporter A388_01596 PF00005 ABC transporter A388_01597 PF00582 Universal stress protein family A388_01601 PF00689 Cation transporting ATPase, C-terminus A388_01601 PF00690 Cation transporter/ATPase, N-terminus A388_01602 PF02308 MgtC family A388_01603 PF03594 Benzoate membrane transport protein A388_01604 PF01037 Lrp/AsnC ligand binding domain A388_01605 PF01810 LysE type translocator A388_01607 PF03466 LysR substrate binding domain A388_01607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01609 PF00108 Thiolase, N-terminal domain A388_01609 PF02803 Thiolase, C-terminal domain A388_01614 PF07690 Major Facilitator Superfamily A388_01615 PF12170 DNA polymerase III tau subunit V interacting with alpha A388_01615 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding A388_01615 PF12169 DNA polymerase III subunits gamma and tau domain III A388_01617 PF05506 Domain of unknown function (DUF756) A388_01617 PF04185 Phosphoesterase family A388_01618 PF03061 Thioesterase superfamily A388_01619 PF00465 Iron-containing alcohol dehydrogenase A388_01621 PF01451 Low molecular weight phosphotyrosine protein phosphatase A388_01622 PF01565 FAD binding domain A388_01622 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain A388_01625 PF01645 Conserved region in glutamate synthase A388_01629 PF12832 MFS_1 like family A388_01631 PF02785 Biotin carboxylase C-terminal domain A388_01631 PF00289 Biotin carboxylase, N-terminal domain A388_01631 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A388_01632 PF00364 Biotin-requiring enzyme A388_01633 PF01220 Dehydroquinase class II A388_01634 PF13438 Domain of unknown function (DUF4113) A388_01634 PF11799 impB/mucB/samB family C-terminal domain A388_01634 PF00817 impB/mucB/samB family A388_01635 PF00005 ABC transporter A388_01636 PF00486 Transcriptional regulatory protein, C terminal A388_01636 PF00072 Response regulator receiver domain A388_01638 PF18267 Rubredoxin NAD+ reductase C-terminal domain A388_01638 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A388_01638 PF04324 BFD-like [2Fe-2S] binding domain A388_01638 PF13806 Rieske-like [2Fe-2S] domain A388_01638 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A388_01638 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01639 PF04324 BFD-like [2Fe-2S] binding domain A388_01639 PF01077 Nitrite and sulphite reductase 4Fe-4S domain A388_01639 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01639 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain A388_01639 PF18267 Rubredoxin NAD+ reductase C-terminal domain A388_01640 PF00384 Molybdopterin oxidoreductase A388_01640 PF01568 Molydopterin dinucleotide binding domain A388_01640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A388_01640 PF04324 BFD-like [2Fe-2S] binding domain A388_01641 PF12804 MobA-like NTP transferase domain A388_01642 PF00384 Molybdopterin oxidoreductase A388_01642 PF01568 Molydopterin dinucleotide binding domain A388_01642 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A388_01643 PF06463 Molybdenum Cofactor Synthesis C A388_01643 PF04055 Radical SAM superfamily A388_01645 PF02391 MoaE protein A388_01646 PF00994 Probable molybdopterin binding domain A388_01646 PF01967 MoaC family A388_01647 PF03453 MoeA N-terminal region (domain I and II) A388_01647 PF00994 Probable molybdopterin binding domain A388_01647 PF03454 MoeA C-terminal region (domain IV) A388_01648 PF01638 HxlR-like helix-turn-helix A388_01649 PF00392 Bacterial regulatory proteins, gntR family A388_01649 PF00155 Aminotransferase class I and II A388_01650 PF00892 EamA-like transporter family A388_01654 PF02635 DsrE/DsrF-like family A388_01655 PF16363 GDP-mannose 4,6 dehydratase A388_01656 PF00206 Lyase A388_01656 PF10415 Fumarase C C-terminus A388_01660 PF01266 FAD dependent oxidoreductase A388_01662 PF02542 YgbB family A388_01664 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A388_01664 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A388_01665 PF00440 Bacterial regulatory proteins, tetR family A388_01666 PF00158 Sigma-54 interaction domain A388_01666 PF00072 Response regulator receiver domain A388_01666 PF02954 Bacterial regulatory protein, Fis family A388_01667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_01667 PF00989 PAS fold A388_01667 PF00512 His Kinase A (phospho-acceptor) domain A388_01668 PF04055 Radical SAM superfamily A388_01668 PF00919 Uncharacterized protein family UPF0004 A388_01668 PF18693 TRAM domain A388_01669 PF00696 Amino acid kinase family A388_01670 PF01765 Ribosome recycling factor A388_01671 PF01255 Putative undecaprenyl diphosphate synthase A388_01673 PF13288 DXP reductoisomerase C-terminal domain A388_01673 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase A388_01673 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain A388_01674 PF17820 PDZ domain A388_01674 PF02163 Peptidase family M50 A388_01674 PF13180 PDZ domain A388_01675 PF07244 Surface antigen variable number repeat A388_01675 PF01103 Surface antigen A388_01677 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD A388_01677 PF00132 Bacterial transferase hexapeptide (six repeats) A388_01678 PF07977 FabA-like domain A388_01679 PF00132 Bacterial transferase hexapeptide (six repeats) A388_01679 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 A388_01681 PF02631 RecX family A388_01682 PF00154 recA bacterial DNA recombination protein A388_01683 PF01479 S4 domain A388_01684 PF13419 Haloacid dehalogenase-like hydrolase A388_01689 PF01037 Lrp/AsnC ligand binding domain A388_01690 PF00266 Aminotransferase class-V A388_01691 PF00324 Amino acid permease A388_01693 PF00082 Subtilase family A388_01693 PF05922 Peptidase inhibitor I9 A388_01694 PF00916 Sulfate permease family A388_01694 PF01740 STAS domain A388_01695 PF02586 SOS response associated peptidase (SRAP) A388_01696 PF07995 Glucose / Sorbosone dehydrogenase A388_01698 PF00990 Diguanylate cyclase, GGDEF domain A388_01698 PF03707 Bacterial signalling protein N terminal repeat A388_01698 PF00563 EAL domain A388_01702 PF02378 Phosphotransferase system, EIIC A388_01702 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit A388_01704 PF00294 pfkB family carbohydrate kinase A388_01705 PF02896 PEP-utilising enzyme, TIM barrel domain A388_01705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 A388_01705 PF05524 PEP-utilising enzyme, N-terminal A388_01705 PF00381 PTS HPr component phosphorylation site A388_01705 PF00391 PEP-utilising enzyme, mobile domain A388_01710 PF05525 Branched-chain amino acid transport protein A388_01711 PF00557 Metallopeptidase family M24 A388_01712 PF03466 LysR substrate binding domain A388_01712 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01714 PF00462 Glutaredoxin A388_01715 PF00202 Aminotransferase class-III A388_01716 PF00478 IMP dehydrogenase / GMP reductase domain A388_01716 PF00571 CBS domain A388_01721 PF00448 SRP54-type protein, GTPase domain A388_01721 PF02881 SRP54-type protein, helical bundle domain A388_01723 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) A388_01725 PF08173 Membrane bound YbgT-like protein A388_01726 PF02322 Cytochrome bd terminal oxidase subunit II A388_01727 PF01654 Cytochrome bd terminal oxidase subunit I A388_01729 PF13737 Transposase DDE domain A388_01730 PF07290 Protein of unknown function (DUF1449) A388_01732 PF00294 pfkB family carbohydrate kinase A388_01733 PF07715 TonB-dependent Receptor Plug Domain A388_01733 PF00593 TonB dependent receptor A388_01734 PF05193 Peptidase M16 inactive domain A388_01734 PF08367 Peptidase M16C associated A388_01734 PF00675 Insulinase (Peptidase family M16) A388_01735 PF02253 Phospholipase A1 A388_01736 PF02386 Cation transport protein A388_01737 PF02080 TrkA-C domain A388_01737 PF02254 TrkA-N domain A388_01738 PF00291 Pyridoxal-phosphate dependent enzyme A388_01738 PF00585 C-terminal regulatory domain of Threonine dehydratase A388_01739 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) A388_01742 PF02774 Semialdehyde dehydrogenase, dimerisation domain A388_01742 PF01118 Semialdehyde dehydrogenase, NAD binding domain A388_01744 PF02617 ATP-dependent Clp protease adaptor protein ClpS A388_01745 PF00004 ATPase family associated with various cellular activities (AAA) A388_01745 PF10431 C-terminal, D2-small domain, of ClpB protein A388_01745 PF17871 AAA lid domain A388_01745 PF07724 AAA domain (Cdc48 subfamily) A388_01745 PF02861 Clp amino terminal domain, pathogenicity island component A388_01746 PF02694 Uncharacterised BCR, YnfA/UPF0060 family A388_01747 PF00793 DAHP synthetase I family A388_01750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_01750 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01756 PF06418 CTP synthase N-terminus A388_01756 PF00117 Glutamine amidotransferase class-I A388_01757 PF00793 DAHP synthetase I family A388_01758 PF03952 Enolase, N-terminal domain A388_01758 PF00113 Enolase, C-terminal TIM barrel domain A388_01759 PF04239 Protein of unknown function (DUF421) A388_01760 PF04977 Septum formation initiator A388_01761 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase A388_01762 PF01144 Coenzyme A transferase A388_01763 PF01144 Coenzyme A transferase A388_01764 PF00108 Thiolase, N-terminal domain A388_01764 PF02803 Thiolase, C-terminal domain A388_01765 PF00206 Lyase A388_01765 PF10397 Adenylosuccinate lyase C-terminus A388_01766 PF00561 alpha/beta hydrolase fold A388_01767 PF07690 Major Facilitator Superfamily A388_01768 PF02627 Carboxymuconolactone decarboxylase family A388_01769 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal A388_01769 PF00775 Dioxygenase A388_01770 PF00775 Dioxygenase A388_01771 PF01487 Type I 3-dehydroquinase A388_01772 PF05048 Periplasmic copper-binding protein (NosD) A388_01773 PF04966 Carbohydrate-selective porin, OprB family A388_01774 PF13360 PQQ-like domain A388_01774 PF01011 PQQ enzyme repeat A388_01776 PF04143 Sulphur transport A388_01778 PF00753 Metallo-beta-lactamase superfamily A388_01779 PF09339 IclR helix-turn-helix domain A388_01779 PF01614 Bacterial transcriptional regulator A388_01780 PF03466 LysR substrate binding domain A388_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01781 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_01781 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_01781 PF02770 Acyl-CoA dehydrogenase, middle domain A388_01784 PF00106 short chain dehydrogenase A388_01786 PF07690 Major Facilitator Superfamily A388_01788 PF01425 Amidase A388_01789 PF08028 Acyl-CoA dehydrogenase, C-terminal domain A388_01792 PF00848 Ring hydroxylating alpha subunit (catalytic domain) A388_01792 PF00355 Rieske [2Fe-2S] domain A388_01795 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_01795 PF00175 Oxidoreductase NAD-binding domain A388_01796 PF01613 Flavin reductase like domain A388_01797 PF02311 AraC-like ligand binding domain A388_01797 PF12833 Helix-turn-helix domain A388_01798 PF01179 Copper amine oxidase, enzyme domain A388_01798 PF02728 Copper amine oxidase, N3 domain A388_01798 PF07833 Copper amine oxidase N-terminal domain A388_01798 PF02727 Copper amine oxidase, N2 domain A388_01800 PF00171 Aldehyde dehydrogenase family A388_01801 PF01804 Penicillin amidase A388_01802 PF12146 Serine aminopeptidase, S33 A388_01803 PF00108 Thiolase, N-terminal domain A388_01803 PF02803 Thiolase, C-terminal domain A388_01804 PF01144 Coenzyme A transferase A388_01805 PF01144 Coenzyme A transferase A388_01806 PF04444 Catechol dioxygenase N terminus A388_01806 PF00775 Dioxygenase A388_01807 PF02426 Muconolactone delta-isomerase A388_01808 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain A388_01808 PF13378 Enolase C-terminal domain-like A388_01809 PF03466 LysR substrate binding domain A388_01809 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01811 PF00392 Bacterial regulatory proteins, gntR family A388_01811 PF07729 FCD domain A388_01812 PF00920 Dehydratase family A388_01813 PF07690 Major Facilitator Superfamily A388_01815 PF00171 Aldehyde dehydrogenase family A388_01817 PF00561 alpha/beta hydrolase fold A388_01818 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_01818 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01819 PF00106 short chain dehydrogenase A388_01821 PF00376 MerR family regulatory protein A388_01821 PF09278 MerR, DNA binding A388_01823 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_01825 PF12706 Beta-lactamase superfamily domain A388_01826 PF00440 Bacterial regulatory proteins, tetR family A388_01826 PF08359 YsiA-like protein, C-terminal region A388_01827 PF12833 Helix-turn-helix domain A388_01827 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term A388_01829 PF06314 Acetoacetate decarboxylase (ADC) A388_01831 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_01833 PF07995 Glucose / Sorbosone dehydrogenase A388_01836 PF00857 Isochorismatase family A388_01837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01837 PF03466 LysR substrate binding domain A388_01838 PF07995 Glucose / Sorbosone dehydrogenase A388_01839 PF02254 TrkA-N domain A388_01839 PF00999 Sodium/hydrogen exchanger family A388_01841 PF01546 Peptidase family M20/M25/M40 A388_01841 PF07687 Peptidase dimerisation domain A388_01845 PF13936 Helix-turn-helix domain A388_01845 PF00665 Integrase core domain A388_01850 PF13737 Transposase DDE domain A388_01852 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) A388_01853 PF07690 Major Facilitator Superfamily A388_01854 PF04909 Amidohydrolase A388_01857 PF08450 SMP-30/Gluconolactonase/LRE-like region A388_01859 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01859 PF03466 LysR substrate binding domain A388_01862 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A388_01862 PF00529 HlyD membrane-fusion protein of T1SS A388_01865 PF00171 Aldehyde dehydrogenase family A388_01868 PF00920 Dehydratase family A388_01870 PF03466 LysR substrate binding domain A388_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01871 PF01370 NAD dependent epimerase/dehydratase family A388_01872 PF07690 Major Facilitator Superfamily A388_01873 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A388_01873 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A388_01874 PF06719 AraC-type transcriptional regulator N-terminus A388_01874 PF12833 Helix-turn-helix domain A388_01875 PF14572 Phosphoribosyl synthetase-associated domain A388_01875 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A388_01876 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family A388_01880 PF00196 Bacterial regulatory proteins, luxR family A388_01880 PF03472 Autoinducer binding domain A388_01881 PF01425 Amidase A388_01882 PF13737 Transposase DDE domain A388_01884 PF13673 Acetyltransferase (GNAT) domain A388_01885 PF12146 Serine aminopeptidase, S33 A388_01886 PF03466 LysR substrate binding domain A388_01886 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01889 PF12146 Serine aminopeptidase, S33 A388_01890 PF12833 Helix-turn-helix domain A388_01890 PF02311 AraC-like ligand binding domain A388_01892 PF00672 HAMP domain A388_01892 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_01892 PF16527 Two-component sensor protein CpxA, periplasmic domain A388_01892 PF00512 His Kinase A (phospho-acceptor) domain A388_01893 PF00486 Transcriptional regulatory protein, C terminal A388_01893 PF00072 Response regulator receiver domain A388_01894 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A388_01894 PF00529 HlyD membrane-fusion protein of T1SS A388_01895 PF00873 AcrB/AcrD/AcrF family A388_01896 PF02321 Outer membrane efflux protein A388_01897 PF12146 Serine aminopeptidase, S33 A388_01898 PF00743 Flavin-binding monooxygenase-like A388_01900 PF01266 FAD dependent oxidoreductase A388_01940 PF13737 Transposase DDE domain A388_01944 PF16970 Type-1 fimbrial protein, A A388_01945 PF02753 Pili assembly chaperone PapD, C-terminal domain A388_01945 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain A388_01946 PF13953 PapC C-terminal domain A388_01946 PF13954 PapC N-terminal domain A388_01946 PF00577 Outer membrane usher protein A388_01949 PF08240 Alcohol dehydrogenase GroES-like domain A388_01949 PF00107 Zinc-binding dehydrogenase A388_01951 PF00199 Catalase A388_01954 PF13091 PLD-like domain A388_01958 PF01244 Membrane dipeptidase (Peptidase family M19) A388_01959 PF13186 Iron-sulfur cluster-binding domain A388_01959 PF04055 Radical SAM superfamily A388_01960 PF05402 Coenzyme PQQ synthesis protein D (PqqD) A388_01961 PF03070 TENA/THI-4/PQQC family A388_01962 PF12706 Beta-lactamase superfamily domain A388_01963 PF13089 Polyphosphate kinase N-terminal domain A388_01963 PF17941 Polyphosphate kinase C-terminal domain 1 A388_01963 PF13090 Polyphosphate kinase C-terminal domain 2 A388_01963 PF02503 Polyphosphate kinase middle domain A388_01964 PF00149 Calcineurin-like phosphoesterase A388_01966 PF00857 Isochorismatase family A388_01966 PF00550 Phosphopantetheine attachment site A388_01967 PF00106 short chain dehydrogenase A388_01968 PF00005 ABC transporter A388_01968 PF03459 TOBE domain A388_01969 PF00528 Binding-protein-dependent transport system inner membrane component A388_01971 PF03459 TOBE domain A388_01971 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01972 PF00848 Ring hydroxylating alpha subunit (catalytic domain) A388_01972 PF00355 Rieske [2Fe-2S] domain A388_01973 PF00866 Ring hydroxylating beta subunit A388_01974 PF00175 Oxidoreductase NAD-binding domain A388_01974 PF00970 Oxidoreductase FAD-binding domain A388_01974 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_01975 PF12833 Helix-turn-helix domain A388_01975 PF14525 AraC-binding-like domain A388_01977 PF01613 Flavin reductase like domain A388_01980 PF01738 Dienelactone hydrolase family A388_01981 PF07690 Major Facilitator Superfamily A388_01982 PF06719 AraC-type transcriptional regulator N-terminus A388_01982 PF12833 Helix-turn-helix domain A388_01986 PF03466 LysR substrate binding domain A388_01986 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01987 PF01144 Coenzyme A transferase A388_01988 PF01144 Coenzyme A transferase A388_01989 PF02667 Short chain fatty acid transporter A388_01990 PF02803 Thiolase, C-terminal domain A388_01990 PF00108 Thiolase, N-terminal domain A388_01991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01991 PF03466 LysR substrate binding domain A388_01992 PF03466 LysR substrate binding domain A388_01992 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_01995 PF10415 Fumarase C C-terminus A388_01995 PF00206 Lyase A388_01996 PF07715 TonB-dependent Receptor Plug Domain A388_01996 PF00593 TonB dependent receptor A388_01997 PF00083 Sugar (and other) transporter A388_02000 PF00005 ABC transporter A388_02001 PF00528 Binding-protein-dependent transport system inner membrane component A388_02002 PF04069 Substrate binding domain of ABC-type glycine betaine transport system A388_02007 PF02525 Flavodoxin-like fold A388_02008 PF01638 HxlR-like helix-turn-helix A388_02009 PF12833 Helix-turn-helix domain A388_02009 PF06445 GyrI-like small molecule binding domain A388_02012 PF01925 Sulfite exporter TauE/SafE A388_02013 PF04273 Putative phosphatase (DUF442) A388_02013 PF00753 Metallo-beta-lactamase superfamily A388_02014 PF00753 Metallo-beta-lactamase superfamily A388_02014 PF04273 Putative phosphatase (DUF442) A388_02015 PF00158 Sigma-54 interaction domain A388_02015 PF00072 Response regulator receiver domain A388_02015 PF02954 Bacterial regulatory protein, Fis family A388_02016 PF01062 Bestrophin, RFP-TM, chloride channel A388_02017 PF08240 Alcohol dehydrogenase GroES-like domain A388_02017 PF00107 Zinc-binding dehydrogenase A388_02018 PF00106 short chain dehydrogenase A388_02019 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02019 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain A388_02020 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A388_02020 PF00364 Biotin-requiring enzyme A388_02020 PF02817 e3 binding domain A388_02021 PF02780 Transketolase, C-terminal domain A388_02021 PF02779 Transketolase, pyrimidine binding domain A388_02022 PF00676 Dehydrogenase E1 component A388_02023 PF04055 Radical SAM superfamily A388_02026 PF00665 Integrase core domain A388_02026 PF13936 Helix-turn-helix domain A388_02028 PF08448 PAS fold A388_02028 PF00990 Diguanylate cyclase, GGDEF domain A388_02029 PF01264 Chorismate synthase A388_02030 PF05175 Methyltransferase small domain A388_02031 PF00291 Pyridoxal-phosphate dependent enzyme A388_02033 PF01434 Peptidase family M41 A388_02033 PF00004 ATPase family associated with various cellular activities (AAA) A388_02033 PF17862 AAA+ lid domain A388_02035 PF05166 YcgL domain A388_02039 PF01612 3'-5' exonuclease A388_02039 PF00570 HRDC domain A388_02040 PF13662 Toprim domain A388_02040 PF02132 RecR protein A388_02041 PF02575 YbaB/EbfC DNA-binding family A388_02043 PF01053 Cys/Met metabolism PLP-dependent enzyme A388_02044 PF00561 alpha/beta hydrolase fold A388_02045 PF08241 Methyltransferase domain A388_02051 PF01230 HIT domain A388_02056 PF02684 Lipid-A-disaccharide synthetase A388_02057 PF07715 TonB-dependent Receptor Plug Domain A388_02057 PF00593 TonB dependent receptor A388_02057 PF07660 Secretin and TonB N terminus short domain A388_02058 PF07715 TonB-dependent Receptor Plug Domain A388_02058 PF00593 TonB dependent receptor A388_02062 PF01925 Sulfite exporter TauE/SafE A388_02063 PF00793 DAHP synthetase I family A388_02064 PF02654 Cobalamin-5-phosphate synthase A388_02066 PF00300 Histidine phosphatase superfamily (branch 1) A388_02067 PF02277 Phosphoribosyltransferase A388_02068 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase A388_02070 PF13419 Haloacid dehalogenase-like hydrolase A388_02075 PF07715 TonB-dependent Receptor Plug Domain A388_02075 PF00593 TonB dependent receptor A388_02076 PF03737 Aldolase/RraA A388_02078 PF04183 IucA / IucC family A388_02078 PF06276 Ferric iron reductase FhuF-like transporter A388_02079 PF06276 Ferric iron reductase FhuF-like transporter A388_02079 PF04183 IucA / IucC family A388_02080 PF07690 Major Facilitator Superfamily A388_02081 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) A388_02082 PF04183 IucA / IucC family A388_02082 PF06276 Ferric iron reductase FhuF-like transporter A388_02083 PF04073 Aminoacyl-tRNA editing domain A388_02085 PF03109 ABC1 family A388_02086 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02086 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02086 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02087 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02087 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02087 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02088 PF00487 Fatty acid desaturase A388_02089 PF12852 Cupin A388_02089 PF12833 Helix-turn-helix domain A388_02090 PF09312 SurA N-terminal domain A388_02090 PF00639 PPIC-type PPIASE domain A388_02091 PF00216 Bacterial DNA-binding protein A388_02094 PF02082 Transcriptional regulator A388_02095 PF00266 Aminotransferase class-V A388_02096 PF01592 NifU-like N terminal domain A388_02097 PF01521 Iron-sulphur cluster biosynthesis A388_02098 PF07743 HSCB C-terminal oligomerisation domain A388_02098 PF00226 DnaJ domain A388_02099 PF00012 Hsp70 protein A388_02100 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_02101 PF00211 Adenylate and Guanylate cyclase catalytic domain A388_02103 PF17757 UvrB interaction domain A388_02103 PF02559 CarD-like/TRCF domain A388_02103 PF00271 Helicase conserved C-terminal domain A388_02103 PF03461 TRCF domain A388_02103 PF00270 DEAD/DEAH box helicase A388_02107 PF03737 Aldolase/RraA A388_02108 PF13460 NAD(P)H-binding A388_02109 PF01649 Ribosomal protein S20 A388_02111 PF00459 Inositol monophosphatase family A388_02114 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A388_02114 PF00005 ABC transporter A388_02115 PF00528 Binding-protein-dependent transport system inner membrane component A388_02116 PF00528 Binding-protein-dependent transport system inner membrane component A388_02117 PF01432 Peptidase family M3 A388_02121 PF00593 TonB dependent receptor A388_02121 PF07715 TonB-dependent Receptor Plug Domain A388_02122 PF03544 Gram-negative bacterial TonB protein C-terminal A388_02123 PF01618 MotA/TolQ/ExbB proton channel family A388_02124 PF02472 Biopolymer transport protein ExbD/TolR A388_02125 PF02472 Biopolymer transport protein ExbD/TolR A388_02126 PF01274 Malate synthase A388_02127 PF03969 AFG1-like ATPase A388_02129 PF00743 Flavin-binding monooxygenase-like A388_02131 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family A388_02133 PF00216 Bacterial DNA-binding protein A388_02134 PF00575 S1 RNA binding domain A388_02135 PF02224 Cytidylate kinase A388_02137 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A388_02139 PF03167 Uracil DNA glycosylase superfamily A388_02141 PF03934 Type II secretion system (T2SS), protein K A388_02142 PF11612 Type II secretion system (T2SS), protein J A388_02142 PF07963 Prokaryotic N-terminal methylation motif A388_02143 PF07963 Prokaryotic N-terminal methylation motif A388_02143 PF02501 Type II secretion system (T2SS), protein I A388_02146 PF01026 TatD related DNase A388_02148 PF09115 DNA polymerase III, delta subunit, C terminal A388_02149 PF02348 Cytidylyltransferase A388_02150 PF02606 Tetraacyldisaccharide-1-P 4'-kinase A388_02151 PF00005 ABC transporter A388_02151 PF00664 ABC transporter transmembrane region A388_02153 PF01618 MotA/TolQ/ExbB proton channel family A388_02154 PF17762 HTH domain found in ParB protein A388_02154 PF02195 ParB-like nuclease domain A388_02155 PF13614 AAA domain A388_02156 PF02527 rRNA small subunit methyltransferase G A388_02157 PF00483 Nucleotidyl transferase A388_02158 PF01636 Phosphotransferase enzyme family A388_02159 PF03968 OstA-like protein A388_02159 PF04453 LPS transport system D A388_02160 PF00639 PPIC-type PPIASE domain A388_02160 PF09312 SurA N-terminal domain A388_02161 PF01116 Fructose-bisphosphate aldolase class-II A388_02163 PF00162 Phosphoglycerate kinase A388_02165 PF02545 Maf-like protein A388_02166 PF08007 Cupin superfamily protein A388_02169 PF00375 Sodium:dicarboxylate symporter family A388_02170 PF06912 Protein of unknown function (DUF1275) A388_02171 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) A388_02172 PF00664 ABC transporter transmembrane region A388_02172 PF00005 ABC transporter A388_02174 PF12833 Helix-turn-helix domain A388_02174 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term A388_02175 PF01597 Glycine cleavage H-protein A388_02176 PF02146 Sir2 family A388_02177 PF00474 Sodium:solute symporter family A388_02178 PF01037 Lrp/AsnC ligand binding domain A388_02179 PF01619 Proline dehydrogenase A388_02179 PF14850 DNA-binding domain of Proline dehydrogenase A388_02179 PF18327 Proline utilization A proline dehydrogenase N-terminal domain A388_02179 PF00171 Aldehyde dehydrogenase family A388_02180 PF04229 GrpB protein A388_02181 PF05958 tRNA (Uracil-5-)-methyltransferase A388_02183 PF09992 Phosphodiester glycosidase A388_02185 PF04264 YceI-like domain A388_02187 PF00456 Transketolase, thiamine diphosphate binding domain A388_02187 PF02779 Transketolase, pyrimidine binding domain A388_02187 PF02780 Transketolase, C-terminal domain A388_02188 PF00438 S-adenosylmethionine synthetase, N-terminal domain A388_02188 PF02772 S-adenosylmethionine synthetase, central domain A388_02188 PF02773 S-adenosylmethionine synthetase, C-terminal domain A388_02192 PF00905 Penicillin binding protein transpeptidase domain A388_02195 PF02075 Crossover junction endodeoxyribonuclease RuvC A388_02196 PF01256 Carbohydrate kinase A388_02196 PF03853 YjeF-related protein N-terminus A388_02197 PF08331 Domain of unknown function (DUF1730) A388_02198 PF06968 Biotin and Thiamin Synthesis associated domain A388_02198 PF04055 Radical SAM superfamily A388_02201 PF16970 Type-1 fimbrial protein, A A388_02203 PF00665 Integrase core domain A388_02203 PF13936 Helix-turn-helix domain A388_02204 PF01636 Phosphotransferase enzyme family A388_02205 PF00665 Integrase core domain A388_02205 PF13936 Helix-turn-helix domain A388_02206 PF02753 Pili assembly chaperone PapD, C-terminal domain A388_02206 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain A388_02207 PF13954 PapC N-terminal domain A388_02207 PF00577 Outer membrane usher protein A388_02207 PF13953 PapC C-terminal domain A388_02211 PF00892 EamA-like transporter family A388_02214 PF01527 Transposase A388_02215 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin A388_02217 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02217 PF03466 LysR substrate binding domain A388_02222 PF13936 Helix-turn-helix domain A388_02222 PF00665 Integrase core domain A388_02223 PF00440 Bacterial regulatory proteins, tetR family A388_02225 PF01709 Transcriptional regulator A388_02226 PF01037 Lrp/AsnC ligand binding domain A388_02228 PF00005 ABC transporter A388_02229 PF00528 Binding-protein-dependent transport system inner membrane component A388_02230 PF00528 Binding-protein-dependent transport system inner membrane component A388_02233 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02233 PF08028 Acyl-CoA dehydrogenase, C-terminal domain A388_02235 PF00296 Luciferase-like monooxygenase A388_02236 PF03180 NLPA lipoprotein A388_02237 PF03180 NLPA lipoprotein A388_02238 PF09383 NIL domain A388_02238 PF00005 ABC transporter A388_02239 PF13737 Transposase DDE domain A388_02240 PF00005 ABC transporter A388_02240 PF09383 NIL domain A388_02241 PF00528 Binding-protein-dependent transport system inner membrane component A388_02242 PF01926 50S ribosome-binding GTPase A388_02242 PF06071 Protein of unknown function (DUF933) A388_02247 PF03591 AzlC protein A388_02248 PF05437 Branched-chain amino acid transport protein (AzlD) A388_02250 PF02222 ATP-grasp domain A388_02251 PF01909 Nucleotidyltransferase domain A388_02251 PF01966 HD domain A388_02251 PF08335 GlnD PII-uridylyltransferase A388_02252 PF00155 Aminotransferase class I and II A388_02254 PF12833 Helix-turn-helix domain A388_02254 PF12852 Cupin A388_02255 PF00255 Glutathione peroxidase A388_02256 PF01641 SelR domain A388_02257 PF00155 Aminotransferase class I and II A388_02258 PF00375 Sodium:dicarboxylate symporter family A388_02259 PF17763 Glutaminase/Asparaginase C-terminal domain A388_02259 PF00710 Asparaginase, N-terminal A388_02260 PF14579 Helix-hairpin-helix motif A388_02260 PF01336 OB-fold nucleic acid binding domain A388_02260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain A388_02260 PF02811 PHP domain A388_02260 PF07733 Bacterial DNA polymerase III alpha NTPase domain A388_02261 PF00588 SpoU rRNA Methylase family A388_02262 PF00132 Bacterial transferase hexapeptide (six repeats) A388_02265 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02265 PF13192 Thioredoxin domain A388_02268 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02268 PF03466 LysR substrate binding domain A388_02269 PF01758 Sodium Bile acid symporter family A388_02270 PF01022 Bacterial regulatory protein, arsR family A388_02271 PF03960 ArsC family A388_02273 PF13382 Adenine deaminase C-terminal domain A388_02273 PF01979 Amidohydrolase family A388_02275 PF03466 LysR substrate binding domain A388_02275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02277 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin A388_02278 PF01177 Asp/Glu/Hydantoin racemase A388_02279 PF02668 Taurine catabolism dioxygenase TauD, TfdA family A388_02280 PF00528 Binding-protein-dependent transport system inner membrane component A388_02281 PF00005 ABC transporter A388_02282 PF04069 Substrate binding domain of ABC-type glycine betaine transport system A388_02284 PF13610 DDE domain A388_02285 PF00083 Sugar (and other) transporter A388_02286 PF00296 Luciferase-like monooxygenase A388_02289 PF01654 Cytochrome bd terminal oxidase subunit I A388_02290 PF02322 Cytochrome bd terminal oxidase subunit II A388_02292 PF00155 Aminotransferase class I and II A388_02292 PF00392 Bacterial regulatory proteins, gntR family A388_02293 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02293 PF03466 LysR substrate binding domain A388_02296 PF00698 Acyl transferase domain A388_02297 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG A388_02299 PF01039 Carboxyl transferase domain A388_02300 PF06857 Malonate decarboxylase delta subunit (MdcD) A388_02301 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase A388_02302 PF16957 Malonate decarboxylase, alpha subunit, transporter A388_02303 PF07690 Major Facilitator Superfamily A388_02306 PF00392 Bacterial regulatory proteins, gntR family A388_02307 PF04172 LrgB-like family A388_02308 PF03788 LrgA family A388_02309 PF03466 LysR substrate binding domain A388_02309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02310 PF14834 Glutathione S-transferase, C-terminal domain A388_02310 PF02798 Glutathione S-transferase, N-terminal domain A388_02311 PF02798 Glutathione S-transferase, N-terminal domain A388_02312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02312 PF03466 LysR substrate binding domain A388_02314 PF00581 Rhodanese-like domain A388_02315 PF00132 Bacterial transferase hexapeptide (six repeats) A388_02317 PF00266 Aminotransferase class-V A388_02318 PF01810 LysE type translocator A388_02319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02319 PF03466 LysR substrate binding domain A388_02320 PF00497 Bacterial extracellular solute-binding proteins, family 3 A388_02321 PF00497 Bacterial extracellular solute-binding proteins, family 3 A388_02322 PF00005 ABC transporter A388_02323 PF00528 Binding-protein-dependent transport system inner membrane component A388_02324 PF00528 Binding-protein-dependent transport system inner membrane component A388_02326 PF00072 Response regulator receiver domain A388_02327 PF00512 His Kinase A (phospho-acceptor) domain A388_02327 PF09308 LuxQ, periplasmic A388_02327 PF00072 Response regulator receiver domain A388_02327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_02329 PF01037 Lrp/AsnC ligand binding domain A388_02329 PF13404 AsnC-type helix-turn-helix domain A388_02331 PF00717 Peptidase S24-like A388_02336 PF00199 Catalase A388_02336 PF06628 Catalase-related immune-responsive A388_02336 PF18011 C-terminal domain found in long catalases A388_02338 PF00994 Probable molybdopterin binding domain A388_02338 PF18146 Damage-inducible protein CinA KH domain A388_02338 PF02464 Competence-damaged protein A388_02346 PF03466 LysR substrate binding domain A388_02346 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02350 PF00501 AMP-binding enzyme A388_02350 PF13193 AMP-binding enzyme C-terminal domain A388_02351 PF00440 Bacterial regulatory proteins, tetR family A388_02352 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02352 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02352 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02353 PF01039 Carboxyl transferase domain A388_02354 PF00378 Enoyl-CoA hydratase/isomerase A388_02355 PF02785 Biotin carboxylase C-terminal domain A388_02355 PF00289 Biotin carboxylase, N-terminal domain A388_02355 PF00364 Biotin-requiring enzyme A388_02355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A388_02356 PF00682 HMGL-like A388_02357 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02357 PF03466 LysR substrate binding domain A388_02360 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02360 PF12806 Acetyl-CoA dehydrogenase C-terminal like A388_02360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02362 PF07690 Major Facilitator Superfamily A388_02364 PF01144 Coenzyme A transferase A388_02365 PF01144 Coenzyme A transferase A388_02366 PF07690 Major Facilitator Superfamily A388_02367 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02367 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02367 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02368 PF00378 Enoyl-CoA hydratase/isomerase A388_02370 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain A388_02370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A388_02370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A388_02371 PF00108 Thiolase, N-terminal domain A388_02371 PF02803 Thiolase, C-terminal domain A388_02372 PF09339 IclR helix-turn-helix domain A388_02373 PF07690 Major Facilitator Superfamily A388_02374 PF03060 Nitronate monooxygenase A388_02375 PF00378 Enoyl-CoA hydratase/isomerase A388_02376 PF09339 IclR helix-turn-helix domain A388_02377 PF02515 CoA-transferase family III A388_02378 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02378 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02378 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02379 PF07690 Major Facilitator Superfamily A388_02380 PF13419 Haloacid dehalogenase-like hydrolase A388_02381 PF00266 Aminotransferase class-V A388_02382 PF01266 FAD dependent oxidoreductase A388_02383 PF00528 Binding-protein-dependent transport system inner membrane component A388_02384 PF08402 TOBE domain A388_02384 PF00005 ABC transporter A388_02386 PF00392 Bacterial regulatory proteins, gntR family A388_02386 PF07702 UTRA domain A388_02387 PF01494 FAD binding domain A388_02388 PF01614 Bacterial transcriptional regulator A388_02388 PF09339 IclR helix-turn-helix domain A388_02389 PF02525 Flavodoxin-like fold A388_02390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02390 PF03466 LysR substrate binding domain A388_02391 PF02627 Carboxymuconolactone decarboxylase family A388_02392 PF00171 Aldehyde dehydrogenase family A388_02394 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin A388_02395 PF00171 Aldehyde dehydrogenase family A388_02396 PF00296 Luciferase-like monooxygenase A388_02397 PF01613 Flavin reductase like domain A388_02398 PF12697 Alpha/beta hydrolase family A388_02402 PF01292 Prokaryotic cytochrome b561 A388_02403 PF00199 Catalase A388_02404 PF00665 Integrase core domain A388_02404 PF13936 Helix-turn-helix domain A388_02405 PF07690 Major Facilitator Superfamily A388_02406 PF00682 HMGL-like A388_02407 PF02515 CoA-transferase family III A388_02413 PF00313 'Cold-shock' DNA-binding domain A388_02415 PF13737 Transposase DDE domain A388_02420 PF00580 UvrD/REP helicase N-terminal domain A388_02420 PF13361 UvrD-like helicase C-terminal domain A388_02421 PF02463 RecF/RecN/SMC N terminal domain A388_02422 PF03061 Thioesterase superfamily A388_02423 PF00132 Bacterial transferase hexapeptide (six repeats) A388_02424 PF07848 PaaX-like protein A388_02424 PF08223 PaaX-like protein C-terminal domain A388_02425 PF00501 AMP-binding enzyme A388_02425 PF14535 AMP-binding enzyme C-terminal domain A388_02426 PF00108 Thiolase, N-terminal domain A388_02426 PF02803 Thiolase, C-terminal domain A388_02427 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain A388_02427 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A388_02427 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A388_02428 PF00378 Enoyl-CoA hydratase/isomerase A388_02429 PF00378 Enoyl-CoA hydratase/isomerase A388_02430 PF00970 Oxidoreductase FAD-binding domain A388_02430 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_02430 PF00175 Oxidoreductase NAD-binding domain A388_02431 PF01883 Iron-sulfur cluster assembly protein A388_02432 PF05138 Phenylacetic acid catabolic protein A388_02433 PF06243 Phenylacetic acid degradation B A388_02434 PF05138 Phenylacetic acid catabolic protein A388_02435 PF00171 Aldehyde dehydrogenase family A388_02435 PF01575 MaoC like domain A388_02436 PF03313 Serine dehydratase alpha chain A388_02436 PF03315 Serine dehydratase beta chain A388_02437 PF13520 Amino acid permease A388_02438 PF00171 Aldehyde dehydrogenase family A388_02439 PF00083 Sugar (and other) transporter A388_02441 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02441 PF04324 BFD-like [2Fe-2S] binding domain A388_02443 PF01266 FAD dependent oxidoreductase A388_02444 PF05544 Proline racemase A388_02445 PF00392 Bacterial regulatory proteins, gntR family A388_02447 PF00701 Dihydrodipicolinate synthetase family A388_02450 PF00376 MerR family regulatory protein A388_02450 PF09278 MerR, DNA binding A388_02452 PF02677 Epoxyqueuosine reductase QueH A388_02455 PF07690 Major Facilitator Superfamily A388_02456 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A388_02458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02458 PF03466 LysR substrate binding domain A388_02464 PF10431 C-terminal, D2-small domain, of ClpB protein A388_02464 PF07724 AAA domain (Cdc48 subfamily) A388_02464 PF17871 AAA lid domain A388_02464 PF00004 ATPase family associated with various cellular activities (AAA) A388_02466 PF00691 OmpA family A388_02466 PF01389 OmpA-like transmembrane domain A388_02475 PF13936 Helix-turn-helix domain A388_02475 PF00665 Integrase core domain A388_02481 PF00005 ABC transporter A388_02482 PF00497 Bacterial extracellular solute-binding proteins, family 3 A388_02483 PF01425 Amidase A388_02484 PF08753 NikR C terminal nickel binding domain A388_02484 PF01402 Ribbon-helix-helix protein, copG family A388_02486 PF01638 HxlR-like helix-turn-helix A388_02487 PF02525 Flavodoxin-like fold A388_02488 PF02785 Biotin carboxylase C-terminal domain A388_02488 PF00289 Biotin carboxylase, N-terminal domain A388_02488 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A388_02491 PF08240 Alcohol dehydrogenase GroES-like domain A388_02491 PF13823 Alcohol dehydrogenase GroES-associated A388_02491 PF00107 Zinc-binding dehydrogenase A388_02493 PF00440 Bacterial regulatory proteins, tetR family A388_02498 PF00654 Voltage gated chloride channel A388_02499 PF00364 Biotin-requiring enzyme A388_02499 PF00289 Biotin carboxylase, N-terminal domain A388_02499 PF02785 Biotin carboxylase C-terminal domain A388_02499 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain A388_02501 PF07286 Protein of unknown function (DUF1445) A388_02502 PF03746 LamB/YcsF family A388_02503 PF01566 Natural resistance-associated macrophage protein A388_02504 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02504 PF03466 LysR substrate binding domain A388_02508 PF03527 RHS protein A388_02508 PF05593 RHS Repeat A388_02511 PF05593 RHS Repeat A388_02511 PF14220 Domain of unknown function (DUF4329) A388_02511 PF03527 RHS protein A388_02512 PF04717 Type VI secretion system, phage-baseplate injector A388_02512 PF16671 Actin cross-linking domain A388_02516 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A388_02516 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A388_02520 PF07690 Major Facilitator Superfamily A388_02524 PF03279 Bacterial lipid A biosynthesis acyltransferase A388_02525 PF03707 Bacterial signalling protein N terminal repeat A388_02525 PF00990 Diguanylate cyclase, GGDEF domain A388_02525 PF00563 EAL domain A388_02527 PF00892 EamA-like transporter family A388_02528 PF01037 Lrp/AsnC ligand binding domain A388_02529 PF01624 MutS domain I A388_02529 PF05188 MutS domain II A388_02529 PF05192 MutS domain III A388_02529 PF00488 MutS domain V A388_02529 PF05190 MutS family domain IV A388_02531 PF11953 Domain of unknown function (DUF3470) A388_02531 PF00037 4Fe-4S binding domain A388_02533 PF01596 O-methyltransferase A388_02535 PF00132 Bacterial transferase hexapeptide (six repeats) A388_02536 PF01205 Uncharacterized protein family UPF0029 A388_02538 PF03412 Peptidase C39 family A388_02538 PF00005 ABC transporter A388_02538 PF00664 ABC transporter transmembrane region A388_02539 PF02321 Outer membrane efflux protein A388_02540 PF12399 Branched-chain amino acid ATP-binding cassette transporter A388_02540 PF00005 ABC transporter A388_02541 PF03968 OstA-like protein A388_02544 PF00571 CBS domain A388_02544 PF01380 SIS domain A388_02545 PF09190 DALR domain A388_02545 PF01406 tRNA synthetases class I (C) catalytic domain A388_02548 PF00589 Phage integrase family A388_02556 PF12708 Pectate lyase superfamily protein A388_02556 PF13229 Right handed beta helix region A388_02560 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) A388_02564 PF06381 Protein of unknown function (DUF1073) A388_02577 PF01638 HxlR-like helix-turn-helix A388_02578 PF07690 Major Facilitator Superfamily A388_02583 PF14748 Pyrroline-5-carboxylate reductase dimerisation A388_02583 PF03807 NADP oxidoreductase coenzyme F420-dependent A388_02585 PF13737 Transposase DDE domain A388_02586 PF00313 'Cold-shock' DNA-binding domain A388_02587 PF01810 LysE type translocator A388_02594 PF02601 Exonuclease VII, large subunit A388_02594 PF13742 OB-fold nucleic acid binding domain A388_02602 PF09278 MerR, DNA binding A388_02602 PF00376 MerR family regulatory protein A388_02603 PF00403 Heavy-metal-associated domain A388_02604 PF00403 Heavy-metal-associated domain A388_02605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02605 PF03466 LysR substrate binding domain A388_02606 PF00848 Ring hydroxylating alpha subunit (catalytic domain) A388_02606 PF00355 Rieske [2Fe-2S] domain A388_02607 PF00866 Ring hydroxylating beta subunit A388_02608 PF00970 Oxidoreductase FAD-binding domain A388_02608 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_02608 PF00175 Oxidoreductase NAD-binding domain A388_02609 PF00106 short chain dehydrogenase A388_02610 PF03594 Benzoate membrane transport protein A388_02611 PF07690 Major Facilitator Superfamily A388_02613 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal A388_02613 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III A388_02614 PF11898 Domain of unknown function (DUF3418) A388_02614 PF04408 Helicase associated domain (HA2) A388_02614 PF00271 Helicase conserved C-terminal domain A388_02614 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold A388_02614 PF00270 DEAD/DEAH box helicase A388_02615 PF00578 AhpC/TSA family A388_02615 PF10417 C-terminal domain of 1-Cys peroxiredoxin A388_02619 PF13192 Thioredoxin domain A388_02619 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02621 PF00043 Glutathione S-transferase, C-terminal domain A388_02621 PF02798 Glutathione S-transferase, N-terminal domain A388_02623 PF02390 Putative methyltransferase A388_02624 PF13417 Glutathione S-transferase, N-terminal domain A388_02624 PF00043 Glutathione S-transferase, C-terminal domain A388_02626 PF13488 Glycine zipper A388_02626 PF00691 OmpA family A388_02627 PF01979 Amidohydrolase family A388_02628 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain A388_02628 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain A388_02630 PF01170 Putative RNA methylase family UPF0020 A388_02630 PF02926 THUMP domain A388_02630 PF10672 S-adenosylmethionine-dependent methyltransferase A388_02633 PF10431 C-terminal, D2-small domain, of ClpB protein A388_02633 PF17871 AAA lid domain A388_02633 PF02861 Clp amino terminal domain, pathogenicity island component A388_02633 PF07724 AAA domain (Cdc48 subfamily) A388_02633 PF00004 ATPase family associated with various cellular activities (AAA) A388_02636 PF02566 OsmC-like protein A388_02637 PF13545 Crp-like helix-turn-helix domain A388_02637 PF00027 Cyclic nucleotide-binding domain A388_02638 PF13936 Helix-turn-helix domain A388_02638 PF00665 Integrase core domain A388_02639 PF00248 Aldo/keto reductase family A388_02642 PF00709 Adenylosuccinate synthetase A388_02643 PF13393 Histidyl-tRNA synthetase A388_02644 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A388_02644 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain A388_02645 PF01411 tRNA synthetases class II (A) A388_02645 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A388_02645 PF02272 DHHA1 domain A388_02646 PF00589 Phage integrase family A388_02646 PF13356 Arm DNA-binding domain A388_02649 PF13737 Transposase DDE domain A388_02664 PF00712 DNA polymerase III beta subunit, N-terminal domain A388_02664 PF02767 DNA polymerase III beta subunit, central domain A388_02664 PF02768 DNA polymerase III beta subunit, C-terminal domain A388_02705 PF13737 Transposase DDE domain A388_02708 PF01695 IstB-like ATP binding protein A388_02710 PF00145 C-5 cytosine-specific DNA methylase A388_02723 PF00929 Exonuclease A388_02731 PF00696 Amino acid kinase family A388_02731 PF13840 ACT domain A388_02731 PF01842 ACT domain A388_02732 PF02599 Global regulator protein family A388_02733 PF01351 Ribonuclease HII A388_02735 PF01292 Prokaryotic cytochrome b561 A388_02736 PF00962 Adenosine/AMP deaminase A388_02737 PF00860 Permease family A388_02739 PF00743 Flavin-binding monooxygenase-like A388_02740 PF00106 short chain dehydrogenase A388_02742 PF17954 Quercetinase C-terminal cupin domain A388_02742 PF02678 Pirin A388_02743 PF00440 Bacterial regulatory proteins, tetR family A388_02743 PF17932 Tetracyclin repressor-like, C-terminal domain A388_02745 PF00106 short chain dehydrogenase A388_02746 PF00743 Flavin-binding monooxygenase-like A388_02747 PF04072 Leucine carboxyl methyltransferase A388_02748 PF12833 Helix-turn-helix domain A388_02748 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term A388_02749 PF00743 Flavin-binding monooxygenase-like A388_02750 PF00106 short chain dehydrogenase A388_02751 PF07859 alpha/beta hydrolase fold A388_02752 PF05199 GMC oxidoreductase A388_02753 PF03573 outer membrane porin, OprD family A388_02754 PF07690 Major Facilitator Superfamily A388_02755 PF00355 Rieske [2Fe-2S] domain A388_02756 PF00175 Oxidoreductase NAD-binding domain A388_02756 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_02759 PF07690 Major Facilitator Superfamily A388_02760 PF00378 Enoyl-CoA hydratase/isomerase A388_02761 PF00171 Aldehyde dehydrogenase family A388_02763 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_02763 PF02770 Acyl-CoA dehydrogenase, middle domain A388_02763 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_02764 PF03573 outer membrane porin, OprD family A388_02767 PF07519 Tannase and feruloyl esterase A388_02768 PF00392 Bacterial regulatory proteins, gntR family A388_02768 PF07729 FCD domain A388_02769 PF00171 Aldehyde dehydrogenase family A388_02770 PF00701 Dihydrodipicolinate synthetase family A388_02771 PF13378 Enolase C-terminal domain-like A388_02772 PF07690 Major Facilitator Superfamily A388_02773 PF08666 SAF domain A388_02773 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus A388_02774 PF00892 EamA-like transporter family A388_02775 PF12833 Helix-turn-helix domain A388_02775 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term A388_02776 PF00171 Aldehyde dehydrogenase family A388_02780 PF00324 Amino acid permease A388_02781 PF04958 Arginine N-succinyltransferase beta subunit A388_02782 PF00202 Aminotransferase class-III A388_02784 PF00171 Aldehyde dehydrogenase family A388_02786 PF00392 Bacterial regulatory proteins, gntR family A388_02786 PF07729 FCD domain A388_02788 PF00324 Amino acid permease A388_02789 PF01266 FAD dependent oxidoreductase A388_02790 PF00324 Amino acid permease A388_02798 PF03527 RHS protein A388_02798 PF05593 RHS Repeat A388_02799 PF16671 Actin cross-linking domain A388_02799 PF04717 Type VI secretion system, phage-baseplate injector A388_02802 PF03180 NLPA lipoprotein A388_02804 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02804 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_02805 PF00764 Arginosuccinate synthase A388_02806 PF00360 Phytochrome region A388_02806 PF00990 Diguanylate cyclase, GGDEF domain A388_02806 PF00563 EAL domain A388_02806 PF01590 GAF domain A388_02807 PF01979 Amidohydrolase family A388_02808 PF00929 Exonuclease A388_02810 PF07715 TonB-dependent Receptor Plug Domain A388_02810 PF00593 TonB dependent receptor A388_02817 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_02817 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02818 PF00005 ABC transporter A388_02818 PF08352 Oligopeptide/dipeptide transporter, C-terminal region A388_02819 PF12911 N-terminal TM domain of oligopeptide transport permease C A388_02819 PF00528 Binding-protein-dependent transport system inner membrane component A388_02820 PF00528 Binding-protein-dependent transport system inner membrane component A388_02821 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle A388_02822 PF01476 LysM domain A388_02822 PF01476 LysM domain A388_02822 PF01464 Transglycosylase SLT domain A388_02822 PF01464 Transglycosylase SLT domain A388_02823 PF00929 Exonuclease A388_02825 PF00293 NUDIX domain A388_02825 PF09297 NADH pyrophosphatase zinc ribbon domain A388_02827 PF04972 BON domain A388_02828 PF02021 Uncharacterised protein family UPF0102 A388_02829 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases A388_02831 PF03466 LysR substrate binding domain A388_02831 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02832 PF01810 LysE type translocator A388_02834 PF13411 MerR HTH family regulatory protein A388_02836 PF01494 FAD binding domain A388_02837 PF01494 FAD binding domain A388_02838 PF00557 Metallopeptidase family M24 A388_02838 PF05195 Aminopeptidase P, N-terminal domain A388_02845 PF01812 5-formyltetrahydrofolate cyclo-ligase family A388_02846 PF05362 Lon protease (S16) C-terminal proteolytic domain A388_02846 PF02190 ATP-dependent protease La (LON) substrate-binding domain A388_02846 PF00004 ATPase family associated with various cellular activities (AAA) A388_02847 PF02590 Predicted SPOUT methyltransferase A388_02848 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase A388_02850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A388_02850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain A388_02851 PF04060 Putative Fe-S cluster A388_02852 PF10576 Iron-sulfur binding domain of endonuclease III A388_02852 PF00730 HhH-GPD superfamily base excision DNA repair protein A388_02852 PF00633 Helix-hairpin-helix motif A388_02853 PF05191 Adenylate kinase, active site lid A388_02856 PF00905 Penicillin binding protein transpeptidase domain A388_02856 PF03717 Penicillin-binding Protein dimerisation domain A388_02859 PF02492 CobW/HypB/UreG, nucleotide-binding domain A388_02860 PF01730 UreF A388_02861 PF05194 UreE urease accessory protein, C-terminal domain A388_02861 PF02814 UreE urease accessory protein, N-terminal domain A388_02862 PF00449 Urease alpha-subunit, N-terminal domain A388_02862 PF01979 Amidohydrolase family A388_02863 PF00699 Urease beta subunit A388_02864 PF00547 Urease, gamma subunit A388_02865 PF01774 UreD urease accessory protein A388_02868 PF00463 Isocitrate lyase family A388_02869 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02869 PF03466 LysR substrate binding domain A388_02870 PF01595 Cyclin M transmembrane N-terminal domain A388_02870 PF03471 Transporter associated domain A388_02870 PF00571 CBS domain A388_02871 PF03600 Citrate transporter A388_02874 PF00009 Elongation factor Tu GTP binding domain A388_02875 PF01507 Phosphoadenosine phosphosulfate reductase family A388_02877 PF14052 Capsule assembly protein Wzi A388_02878 PF01336 OB-fold nucleic acid binding domain A388_02878 PF00152 tRNA synthetases class II (D, K and N) A388_02881 PF00301 Rubredoxin A388_02882 PF18113 Rubredoxin binding C-terminal domain A388_02882 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02883 PF00561 alpha/beta hydrolase fold A388_02884 PF03466 LysR substrate binding domain A388_02884 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02886 PF13089 Polyphosphate kinase N-terminal domain A388_02886 PF13090 Polyphosphate kinase C-terminal domain 2 A388_02886 PF02503 Polyphosphate kinase middle domain A388_02886 PF17941 Polyphosphate kinase C-terminal domain 1 A388_02887 PF00912 Transglycosylase A388_02888 PF01694 Rhomboid family A388_02890 PF00005 ABC transporter A388_02891 PF13472 GDSL-like Lipase/Acylhydrolase family A388_02892 PF00484 Carbonic anhydrase A388_02893 PF00561 alpha/beta hydrolase fold A388_02895 PF07715 TonB-dependent Receptor Plug Domain A388_02895 PF00593 TonB dependent receptor A388_02896 PF01521 Iron-sulphur cluster biosynthesis A388_02896 PF01106 NifU-like domain A388_02898 PF00884 Sulfatase A388_02899 PF03781 Sulfatase-modifying factor enzyme 1 A388_02902 PF00291 Pyridoxal-phosphate dependent enzyme A388_02903 PF01384 Phosphate transporter family A388_02904 PF00809 Pterin binding enzyme A388_02904 PF02574 Homocysteine S-methyltransferase A388_02904 PF02965 Vitamin B12 dependent methionine synthase, activation domain A388_02904 PF02310 B12 binding domain A388_02904 PF02607 B12 binding domain A388_02905 PF02779 Transketolase, pyrimidine binding domain A388_02905 PF02780 Transketolase, C-terminal domain A388_02906 PF00456 Transketolase, thiamine diphosphate binding domain A388_02907 PF07690 Major Facilitator Superfamily A388_02909 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_02909 PF03466 LysR substrate binding domain A388_02911 PF01263 Aldose 1-epimerase A388_02912 PF07690 Major Facilitator Superfamily A388_02913 PF02311 AraC-like ligand binding domain A388_02913 PF12833 Helix-turn-helix domain A388_02914 PF04960 Glutaminase A388_02915 PF01327 Polypeptide deformylase A388_02916 PF07690 Major Facilitator Superfamily A388_02918 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A388_02918 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A388_02918 PF00205 Thiamine pyrophosphate enzyme, central domain A388_02919 PF00171 Aldehyde dehydrogenase family A388_02920 PF03447 Homoserine dehydrogenase, NAD binding domain A388_02920 PF01958 Domain of unknown function DUF108 A388_02922 PF12697 Alpha/beta hydrolase family A388_02924 PF07690 Major Facilitator Superfamily A388_02925 PF14759 Reductase C-terminal A388_02925 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_02926 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A388_02928 PF00355 Rieske [2Fe-2S] domain A388_02930 PF00355 Rieske [2Fe-2S] domain A388_02931 PF09339 IclR helix-turn-helix domain A388_02931 PF01614 Bacterial transcriptional regulator A388_02934 PF00378 Enoyl-CoA hydratase/isomerase A388_02936 PF00535 Glycosyl transferase family 2 A388_02937 PF14883 Hypothetical glycosyl hydrolase family 13 A388_02937 PF01522 Polysaccharide deacetylase A388_02938 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A388_02939 PF07152 YaeQ protein A388_02940 PF00375 Sodium:dicarboxylate symporter family A388_02941 PF07683 Cobalamin synthesis protein cobW C-terminal domain A388_02941 PF02492 CobW/HypB/UreG, nucleotide-binding domain A388_02943 PF03061 Thioesterase superfamily A388_02945 PF02028 BCCT, betaine/carnitine/choline family transporter A388_02946 PF02028 BCCT, betaine/carnitine/choline family transporter A388_02947 PF00440 Bacterial regulatory proteins, tetR family A388_02947 PF13977 BetI-type transcriptional repressor, C-terminal A388_02948 PF00171 Aldehyde dehydrogenase family A388_02949 PF00732 GMC oxidoreductase A388_02949 PF05199 GMC oxidoreductase A388_02950 PF06039 Malate:quinone oxidoreductase (Mqo) A388_02952 PF02574 Homocysteine S-methyltransferase A388_02953 PF13520 Amino acid permease A388_02958 PF00701 Dihydrodipicolinate synthetase family A388_02959 PF00083 Sugar (and other) transporter A388_02964 PF01026 TatD related DNase A388_02967 PF07693 KAP family P-loop domain A388_02982 PF13356 Arm DNA-binding domain A388_02982 PF00589 Phage integrase family A388_02985 PF07690 Major Facilitator Superfamily A388_02986 PF13533 Biotin-lipoyl like A388_02987 PF03061 Thioesterase superfamily A388_02988 PF00490 Delta-aminolevulinic acid dehydratase A388_02989 PF01266 FAD dependent oxidoreductase A388_02990 PF08338 Domain of unknown function (DUF1731) A388_02990 PF01370 NAD dependent epimerase/dehydratase family A388_02994 PF12320 Type 5 capsule protein repressor C-terminal domain A388_02994 PF00149 Calcineurin-like phosphoesterase A388_02996 PF01168 Alanine racemase, N-terminal domain A388_02997 PF00437 Type II/IV secretion system protein A388_02998 PF00437 Type II/IV secretion system protein A388_02999 PF01475 Ferric uptake regulator family A388_03000 PF04355 SmpA / OmlA family A388_03001 PF03658 RnfH family Ubiquitin A388_03003 PF01814 Hemerythrin HHE cation binding domain A388_03004 PF13230 Glutamine amidotransferases class-II A388_03006 PF00696 Amino acid kinase family A388_03007 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A388_03007 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A388_03007 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A388_03007 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A388_03008 PF00692 dUTPase A388_03009 PF00580 UvrD/REP helicase N-terminal domain A388_03009 PF13361 UvrD-like helicase C-terminal domain A388_03010 PF13488 Glycine zipper A388_03010 PF00691 OmpA family A388_03011 PF01553 Acyltransferase A388_03013 PF03775 Septum formation inhibitor MinC, C-terminal domain A388_03014 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain A388_03015 PF03776 Septum formation topological specificity factor MinE A388_03017 PF01810 LysE type translocator A388_03018 PF17854 FtsK alpha domain A388_03018 PF09397 Ftsk gamma domain A388_03018 PF13491 4TM region of DNA translocase FtsK/SpoIIIE A388_03018 PF01580 FtsK/SpoIIIE family A388_03019 PF07992 Pyridine nucleotide-disulphide oxidoreductase A388_03020 PF03588 Leucyl/phenylalanyl-tRNA protein transferase A388_03021 PF04377 Arginine-tRNA-protein transferase, C terminus A388_03021 PF04376 Arginine-tRNA-protein transferase, N terminus A388_03022 PF00583 Acetyltransferase (GNAT) family A388_03025 PF03143 Elongation factor Tu C-terminal domain A388_03025 PF03144 Elongation factor Tu domain 2 A388_03025 PF00009 Elongation factor Tu GTP binding domain A388_03026 PF14492 Elongation Factor G, domain II A388_03026 PF03144 Elongation factor Tu domain 2 A388_03026 PF00679 Elongation factor G C-terminus A388_03026 PF03764 Elongation factor G, domain IV A388_03026 PF00009 Elongation factor Tu GTP binding domain A388_03027 PF00177 Ribosomal protein S7p/S5e A388_03028 PF00164 Ribosomal protein S12/S23 A388_03030 PF02801 Beta-ketoacyl synthase, C-terminal domain A388_03030 PF00109 Beta-ketoacyl synthase, N-terminal domain A388_03032 PF02678 Pirin A388_03032 PF05726 Pirin C-terminal cupin domain A388_03034 PF00795 Carbon-nitrogen hydrolase A388_03034 PF02540 NAD synthase A388_03037 PF00970 Oxidoreductase FAD-binding domain A388_03037 PF00175 Oxidoreductase NAD-binding domain A388_03037 PF00111 2Fe-2S iron-sulfur cluster binding domain A388_03038 PF00171 Aldehyde dehydrogenase family A388_03039 PF00848 Ring hydroxylating alpha subunit (catalytic domain) A388_03039 PF00355 Rieske [2Fe-2S] domain A388_03040 PF07859 alpha/beta hydrolase fold A388_03041 PF02028 BCCT, betaine/carnitine/choline family transporter A388_03042 PF00180 Isocitrate/isopropylmalate dehydrogenase A388_03043 PF03466 LysR substrate binding domain A388_03043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03046 PF00037 4Fe-4S binding domain A388_03047 PF01467 Cytidylyltransferase-like A388_03048 PF01668 SmpB protein A388_03049 PF03358 NADPH-dependent FMN reductase A388_03051 PF01479 S4 domain A388_03051 PF00849 RNA pseudouridylate synthase A388_03052 PF13525 Outer membrane lipoprotein A388_03053 PF01807 CHC2 zinc finger A388_03053 PF10410 DnaB-helicase binding domain of primase A388_03053 PF08278 DNA primase DnaG DnaB-binding A388_03053 PF08275 DNA primase catalytic core, N-terminal domain A388_03054 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain A388_03054 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain A388_03054 PF01488 Shikimate / quinate 5-dehydrogenase A388_03056 PF03550 Outer membrane lipoprotein LolB A388_03061 PF14572 Phosphoribosyl synthetase-associated domain A388_03061 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase A388_03062 PF01386 Ribosomal L25p family A388_03063 PF01195 Peptidyl-tRNA hydrolase A388_03064 PF02261 Aspartate decarboxylase A388_03067 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A388_03069 PF03070 TENA/THI-4/PQQC family A388_03069 PF08543 Phosphomethylpyrimidine kinase A388_03069 PF02581 Thiamine monophosphate synthase A388_03070 PF04972 BON domain A388_03070 PF01476 LysM domain A388_03071 PF00550 Phosphopantetheine attachment site A388_03073 PF00698 Acyl transferase domain A388_03074 PF01783 Ribosomal L32p protein family A388_03075 PF02620 Large ribosomal RNA subunit accumulation protein YceD A388_03076 PF04315 Elongation factor P hydroxylase A388_03077 PF01300 Telomere recombination A388_03078 PF02616 Segregation and condensation protein ScpA A388_03079 PF04079 Segregation and condensation complex subunit ScpB A388_03080 PF00849 RNA pseudouridylate synthase A388_03080 PF01479 S4 domain A388_03083 PF00155 Aminotransferase class I and II A388_03084 PF00202 Aminotransferase class-III A388_03084 PF04055 Radical SAM superfamily A388_03084 PF06968 Biotin and Thiamin Synthesis associated domain A388_03085 PF12697 Alpha/beta hydrolase family A388_03085 PF08241 Methyltransferase domain A388_03086 PF02358 Trehalose-phosphatase A388_03087 PF00982 Glycosyltransferase family 20 A388_03088 PF07690 Major Facilitator Superfamily A388_03089 PF00210 Ferritin-like domain A388_03090 PF01653 NAD-dependent DNA ligase adenylation domain A388_03090 PF03119 NAD-dependent DNA ligase C4 zinc finger domain A388_03090 PF12826 Helix-hairpin-helix motif A388_03090 PF00533 BRCA1 C Terminus (BRCT) domain A388_03090 PF03120 NAD-dependent DNA ligase OB-fold domain A388_03092 PF02463 RecF/RecN/SMC N terminal domain A388_03092 PF06470 SMC proteins Flexible Hinge Domain A388_03094 PF01925 Sulfite exporter TauE/SafE A388_03096 PF03309 Type III pantothenate kinase A388_03097 PF02881 SRP54-type protein, helical bundle domain A388_03097 PF02978 Signal peptide binding domain A388_03097 PF00448 SRP54-type protein, GTPase domain A388_03099 PF01207 Dihydrouridine synthase (Dus) A388_03105 PF00692 dUTPase A388_03108 PF01048 Phosphorylase superfamily A388_03109 PF10609 NUBPL iron-transfer P-loop NTPase A388_03111 PF09334 tRNA synthetases class I (M) A388_03111 PF01588 Putative tRNA binding domain A388_03116 PF13533 Biotin-lipoyl like A388_03117 PF00291 Pyridoxal-phosphate dependent enzyme A388_03120 PF05552 Conserved TM helix A388_03123 PF00970 Oxidoreductase FAD-binding domain A388_03123 PF00175 Oxidoreductase NAD-binding domain A388_03124 PF03466 LysR substrate binding domain A388_03124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03126 PF00313 'Cold-shock' DNA-binding domain A388_03128 PF00361 Proton-conducting membrane transporter A388_03129 PF00361 Proton-conducting membrane transporter A388_03130 PF00361 Proton-conducting membrane transporter A388_03130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A388_03131 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A388_03132 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 A388_03133 PF12838 4Fe-4S dicluster domain A388_03134 PF00146 NADH dehydrogenase A388_03135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain A388_03135 PF00384 Molybdopterin oxidoreductase A388_03135 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A388_03136 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A388_03136 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit A388_03136 PF10531 SLBB domain A388_03138 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit A388_03138 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit A388_03139 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit A388_03140 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 A388_03141 PF17151 Periplasmic sensor domain A388_03141 PF00990 Diguanylate cyclase, GGDEF domain A388_03143 PF00512 His Kinase A (phospho-acceptor) domain A388_03143 PF00672 HAMP domain A388_03143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03144 PF00486 Transcriptional regulatory protein, C terminal A388_03144 PF00072 Response regulator receiver domain A388_03145 PF00317 Ribonucleotide reductase, all-alpha domain A388_03145 PF03477 ATP cone domain A388_03145 PF02867 Ribonucleotide reductase, barrel domain A388_03147 PF00268 Ribonucleotide reductase, small chain A388_03149 PF02567 Phenazine biosynthesis-like protein A388_03151 PF13737 Transposase DDE domain A388_03156 PF00440 Bacterial regulatory proteins, tetR family A388_03156 PF16295 Tetracyclin repressor-like, C-terminal domain A388_03157 PF01613 Flavin reductase like domain A388_03158 PF01717 Cobalamin-independent synthase, Catalytic domain A388_03158 PF08267 Cobalamin-independent synthase, N-terminal domain A388_03160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03160 PF03466 LysR substrate binding domain A388_03161 PF01810 LysE type translocator A388_03163 PF12833 Helix-turn-helix domain A388_03163 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term A388_03164 PF07687 Peptidase dimerisation domain A388_03164 PF01546 Peptidase family M20/M25/M40 A388_03166 PF03466 LysR substrate binding domain A388_03166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03167 PF07690 Major Facilitator Superfamily A388_03169 PF03466 LysR substrate binding domain A388_03169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03170 PF00890 FAD binding domain A388_03170 PF14537 Cytochrome c3 A388_03172 PF02515 CoA-transferase family III A388_03173 PF07690 Major Facilitator Superfamily A388_03174 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_03174 PF00441 Acyl-CoA dehydrogenase, C-terminal domain A388_03174 PF02770 Acyl-CoA dehydrogenase, middle domain A388_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03175 PF03466 LysR substrate binding domain A388_03176 PF08240 Alcohol dehydrogenase GroES-like domain A388_03176 PF00107 Zinc-binding dehydrogenase A388_03177 PF00962 Adenosine/AMP deaminase A388_03182 PF02445 Quinolinate synthetase A protein A388_03183 PF01960 ArgJ family A388_03184 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A388_03184 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A388_03185 PF00893 Small Multidrug Resistance protein A388_03187 PF05275 Copper resistance protein B precursor (CopB) A388_03188 PF00394 Multicopper oxidase A388_03188 PF07732 Multicopper oxidase A388_03188 PF07731 Multicopper oxidase A388_03191 PF00834 Ribulose-phosphate 3 epimerase family A388_03193 PF00756 Putative esterase A388_03195 PF04445 Putative SAM-dependent methyltransferase A388_03196 PF00814 Glycoprotease family A388_03197 PF00132 Bacterial transferase hexapeptide (six repeats) A388_03198 PF00293 NUDIX domain A388_03206 PF04715 Anthranilate synthase component I, N terminal region A388_03206 PF00425 chorismate binding enzyme A388_03207 PF00155 Aminotransferase class I and II A388_03208 PF00815 Histidinol dehydrogenase A388_03209 PF01634 ATP phosphoribosyltransferase A388_03210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) A388_03211 PF01722 BolA-like protein A388_03212 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein A388_03213 PF04552 Sigma-54, DNA binding domain A388_03213 PF00309 Sigma-54 factor, Activator interacting domain (AID) A388_03213 PF04963 Sigma-54 factor, core binding domain A388_03219 PF00795 Carbon-nitrogen hydrolase A388_03221 PF01047 MarR family A388_03222 PF02566 OsmC-like protein A388_03223 PF00437 Type II/IV secretion system protein A388_03227 PF01367 5'-3' exonuclease, C-terminal SAM fold A388_03227 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain A388_03227 PF00476 DNA polymerase family A A388_03227 PF01612 3'-5' exonuclease A388_03228 PF02325 YGGT family A388_03229 PF03807 NADP oxidoreductase coenzyme F420-dependent A388_03229 PF14748 Pyrroline-5-carboxylate reductase dimerisation A388_03230 PF01171 PP-loop family A388_03230 PF09179 TilS substrate binding domain A388_03230 PF11734 TilS substrate C-terminal domain A388_03231 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit A388_03232 PF02541 Ppx/GppA phosphatase family A388_03233 PF00085 Thioredoxin A388_03234 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain A388_03234 PF07498 Rho termination factor, N-terminal domain A388_03234 PF07497 Rho termination factor, RNA-binding domain A388_03236 PF00216 Bacterial DNA-binding protein A388_03237 PF03483 B3/4 domain A388_03237 PF03484 tRNA synthetase B5 domain A388_03237 PF03147 Ferredoxin-fold anticodon binding domain A388_03237 PF01588 Putative tRNA binding domain A388_03237 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain A388_03238 PF01409 tRNA synthetases class II core domain (F) A388_03238 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain A388_03241 PF00453 Ribosomal protein L20 A388_03242 PF01632 Ribosomal protein L35 A388_03243 PF07690 Major Facilitator Superfamily A388_03244 PF09335 SNARE associated Golgi protein A388_03245 PF02798 Glutathione S-transferase, N-terminal domain A388_03245 PF00043 Glutathione S-transferase, C-terminal domain A388_03246 PF00707 Translation initiation factor IF-3, C-terminal domain A388_03246 PF05198 Translation initiation factor IF-3, N-terminal domain A388_03247 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain A388_03247 PF02824 TGS domain A388_03247 PF03129 Anticodon binding domain A388_03247 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) A388_03248 PF00501 AMP-binding enzyme A388_03248 PF13193 AMP-binding enzyme C-terminal domain A388_03249 PF04751 Protein of unknown function (DUF615) A388_03250 PF00381 PTS HPr component phosphorylation site A388_03251 PF03668 P-loop ATPase protein family A388_03252 PF02569 Pantoate-beta-alanine ligase A388_03253 PF02548 Ketopantoate hydroxymethyltransferase A388_03254 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) A388_03255 PF12627 Probable RNA and SrmB- binding site of polymerase A A388_03255 PF01743 Poly A polymerase head domain A388_03255 PF12626 Polymerase A arginine-rich C-terminus A388_03257 PF03819 MazG nucleotide pyrophosphohydrolase domain A388_03259 PF04607 Region found in RelA / SpoT proteins A388_03259 PF13291 ACT domain A388_03259 PF02824 TGS domain A388_03260 PF05958 tRNA (Uracil-5-)-methyltransferase A388_03262 PF00291 Pyridoxal-phosphate dependent enzyme A388_03263 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03263 PF00512 His Kinase A (phospho-acceptor) domain A388_03263 PF01627 Hpt domain A388_03263 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) A388_03263 PF00072 Response regulator receiver domain A388_03263 PF00672 HAMP domain A388_03264 PF00378 Enoyl-CoA hydratase/isomerase A388_03265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase A388_03265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase A388_03266 PF01261 Xylose isomerase-like TIM barrel A388_03268 PF00106 short chain dehydrogenase A388_03269 PF02233 NAD(P) transhydrogenase beta subunit A388_03270 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch A388_03271 PF01262 Alanine dehydrogenase/PNT, C-terminal domain A388_03271 PF05222 Alanine dehydrogenase/PNT, N-terminal domain A388_03272 PF00892 EamA-like transporter family A388_03274 PF07690 Major Facilitator Superfamily A388_03278 PF00394 Multicopper oxidase A388_03278 PF07732 Multicopper oxidase A388_03278 PF07731 Multicopper oxidase A388_03280 PF00072 Response regulator receiver domain A388_03280 PF00486 Transcriptional regulatory protein, C terminal A388_03281 PF00512 His Kinase A (phospho-acceptor) domain A388_03281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03281 PF00672 HAMP domain A388_03282 PF04945 YHS domain A388_03297 PF00589 Phage integrase family A388_03298 PF01207 Dihydrouridine synthase (Dus) A388_03300 PF03466 LysR substrate binding domain A388_03300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03301 PF00899 ThiF family A388_03302 PF00694 Aconitase C-terminal domain A388_03302 PF00330 Aconitase family (aconitate hydratase) A388_03303 PF01026 TatD related DNase A388_03306 PF16658 Class II release factor RF3, C-terminal domain A388_03306 PF00009 Elongation factor Tu GTP binding domain A388_03306 PF03144 Elongation factor Tu domain 2 A388_03310 PF00563 EAL domain A388_03310 PF00990 Diguanylate cyclase, GGDEF domain A388_03310 PF03707 Bacterial signalling protein N terminal repeat A388_03311 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain A388_03311 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain A388_03312 PF10369 Small subunit of acetolactate synthase A388_03313 PF00205 Thiamine pyrophosphate enzyme, central domain A388_03313 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain A388_03313 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain A388_03315 PF08264 Anticodon-binding domain of tRNA A388_03315 PF00133 tRNA synthetases class I (I, L, M and V) A388_03315 PF13603 Leucyl-tRNA synthetase, Domain 2 A388_03315 PF09334 tRNA synthetases class I (M) A388_03318 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A388_03319 PF02687 FtsX-like permease family A388_03319 PF00005 ABC transporter A388_03319 PF12704 MacB-like periplasmic core domain A388_03320 PF02321 Outer membrane efflux protein A388_03323 PF00929 Exonuclease A388_03324 PF03193 RsgA GTPase A388_03326 PF00462 Glutaredoxin A388_03327 PF02556 Preprotein translocase subunit SecB A388_03329 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal A388_03329 PF01926 50S ribosome-binding GTPase A388_03330 PF13360 PQQ-like domain A388_03332 PF13393 Histidyl-tRNA synthetase A388_03332 PF03129 Anticodon binding domain A388_03333 PF04551 GcpE protein A388_03334 PF13464 Domain of unknown function (DUF4115) A388_03336 PF04055 Radical SAM superfamily A388_03337 PF00334 Nucleoside diphosphate kinase A388_03338 PF04384 Iron-sulphur cluster assembly A388_03339 PF01569 PAP2 superfamily A388_03340 PF00534 Glycosyl transferases group 1 A388_03340 PF13439 Glycosyltransferase Family 4 A388_03341 PF11818 C-terminal domain of tail specific protease (DUF3340) A388_03341 PF00595 PDZ domain A388_03341 PF03572 Peptidase family S41 A388_03341 PF17804 Tail specific protease N-terminal domain A388_03342 PF00933 Glycosyl hydrolase family 3 N terminal domain A388_03344 PF00561 alpha/beta hydrolase fold A388_03345 PF00171 Aldehyde dehydrogenase family A388_03346 PF00171 Aldehyde dehydrogenase family A388_03347 PF01202 Shikimate kinase A388_03348 PF02447 GntP family permease A388_03349 PF01081 KDPG and KHG aldolase A388_03350 PF00920 Dehydratase family A388_03351 PF00871 Acetokinase family A388_03352 PF01515 Phosphate acetyl/butaryl transferase A388_03352 PF07085 DRTGG domain A388_03353 PF05681 Fumarate hydratase (Fumerase) A388_03353 PF05683 Fumarase C-terminus A388_03356 PF10431 C-terminal, D2-small domain, of ClpB protein A388_03356 PF07724 AAA domain (Cdc48 subfamily) A388_03356 PF06689 ClpX C4-type zinc finger A388_03357 PF00574 Clp protease A388_03358 PF05698 Bacterial trigger factor protein (TF) C-terminus A388_03358 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase A388_03358 PF05697 Bacterial trigger factor protein (TF) A388_03359 PF07715 TonB-dependent Receptor Plug Domain A388_03359 PF00593 TonB dependent receptor A388_03360 PF18331 PKHD-type hydroxylase C-terminal domain A388_03360 PF13640 2OG-Fe(II) oxygenase superfamily A388_03361 PF00682 HMGL-like A388_03361 PF08502 LeuA allosteric (dimerisation) domain A388_03362 PF00561 alpha/beta hydrolase fold A388_03363 PF00561 alpha/beta hydrolase fold A388_03363 PF07021 Methionine biosynthesis protein MetW A388_03365 PF01725 Ham1 family A388_03367 PF02416 mttA/Hcf106 family A388_03368 PF02416 mttA/Hcf106 family A388_03369 PF00902 Sec-independent protein translocase protein (TatC) A388_03373 PF01790 Prolipoprotein diacylglyceryl transferase A388_03376 PF00303 Thymidylate synthase A388_03377 PF00186 Dihydrofolate reductase A388_03379 PF01625 Peptide methionine sulfoxide reductase A388_03381 PF01618 MotA/TolQ/ExbB proton channel family A388_03383 PF01842 ACT domain A388_03383 PF00551 Formyl transferase A388_03385 PF00171 Aldehyde dehydrogenase family A388_03386 PF00830 Ribosomal L28 family A388_03387 PF00471 Ribosomal protein L33 A388_03388 PF00999 Sodium/hydrogen exchanger family A388_03388 PF02254 TrkA-N domain A388_03392 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) A388_03393 PF13361 UvrD-like helicase C-terminal domain A388_03393 PF00580 UvrD/REP helicase N-terminal domain A388_03396 PF01751 Toprim domain A388_03396 PF01396 Topoisomerase DNA binding C4 zinc finger A388_03396 PF01131 DNA topoisomerase A388_03396 PF08272 Topoisomerase I zinc-ribbon-like A388_03398 PF01638 HxlR-like helix-turn-helix A388_03399 PF08240 Alcohol dehydrogenase GroES-like domain A388_03399 PF00107 Zinc-binding dehydrogenase A388_03402 PF01810 LysE type translocator A388_03403 PF03279 Bacterial lipid A biosynthesis acyltransferase A388_03405 PF00375 Sodium:dicarboxylate symporter family A388_03407 PF02774 Semialdehyde dehydrogenase, dimerisation domain A388_03407 PF01118 Semialdehyde dehydrogenase, NAD binding domain A388_03411 PF01416 tRNA pseudouridine synthase A388_03413 PF01176 Translation initiation factor 1A / IF-1 A388_03416 PF00180 Isocitrate/isopropylmalate dehydrogenase A388_03418 PF00694 Aconitase C-terminal domain A388_03419 PF00330 Aconitase family (aconitate hydratase) A388_03421 PF03466 LysR substrate binding domain A388_03421 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03423 PF00293 NUDIX domain A388_03424 PF00391 PEP-utilising enzyme, mobile domain A388_03424 PF01590 GAF domain A388_03424 PF05524 PEP-utilising enzyme, N-terminal A388_03424 PF02896 PEP-utilising enzyme, TIM barrel domain A388_03425 PF00141 Peroxidase A388_03426 PF12706 Beta-lactamase superfamily domain A388_03427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03427 PF03466 LysR substrate binding domain A388_03429 PF02798 Glutathione S-transferase, N-terminal domain A388_03430 PF08279 HTH domain A388_03430 PF13280 WYL domain A388_03431 PF13419 Haloacid dehalogenase-like hydrolase A388_03432 PF00849 RNA pseudouridylate synthase A388_03432 PF01479 S4 domain A388_03433 PF12111 Polyribonucleotide phosphorylase C terminal A388_03433 PF10150 Ribonuclease E/G family A388_03433 PF00575 S1 RNA binding domain A388_03434 PF00501 AMP-binding enzyme A388_03434 PF13193 AMP-binding enzyme C-terminal domain A388_03437 PF03466 LysR substrate binding domain A388_03437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03438 PF00106 short chain dehydrogenase A388_03439 PF06969 HemN C-terminal domain A388_03439 PF04055 Radical SAM superfamily A388_03441 PF01554 MatE A388_03442 PF02770 Acyl-CoA dehydrogenase, middle domain A388_03442 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_03442 PF08028 Acyl-CoA dehydrogenase, C-terminal domain A388_03443 PF08028 Acyl-CoA dehydrogenase, C-terminal domain A388_03443 PF02771 Acyl-CoA dehydrogenase, N-terminal domain A388_03444 PF03109 ABC1 family A388_03445 PF01197 Ribosomal protein L31 A388_03447 PF02537 CrcB-like protein, Camphor Resistance (CrcB) A388_03451 PF03884 DNA gyrase inhibitor YacG A388_03452 PF00753 Metallo-beta-lactamase superfamily A388_03453 PF00762 Ferrochelatase A388_03455 PF01177 Asp/Glu/Hydantoin racemase A388_03459 PF01206 Sulfurtransferase TusA A388_03460 PF00571 CBS domain A388_03460 PF03471 Transporter associated domain A388_03461 PF00795 Carbon-nitrogen hydrolase A388_03462 PF01588 Putative tRNA binding domain A388_03464 PF08334 Type II secretion system (T2SS), protein G A388_03464 PF07963 Prokaryotic N-terminal methylation motif A388_03465 PF00482 Type II secretion system (T2SS), protein F A388_03466 PF18074 Primosomal protein N C-terminal domain A388_03466 PF00271 Helicase conserved C-terminal domain A388_03466 PF18319 PriA DNA helicase Cys-rich region (CRR) domain A388_03466 PF00270 DEAD/DEAH box helicase A388_03466 PF17764 3′ DNA-binding domain (3′BD) A388_03467 PF02254 TrkA-N domain A388_03467 PF00999 Sodium/hydrogen exchanger family A388_03468 PF01430 Hsp33 protein A388_03470 PF00226 DnaJ domain A388_03470 PF01556 DnaJ C terminal domain A388_03472 PF01544 CorA-like Mg2+ transporter protein A388_03473 PF00013 KH domain A388_03473 PF01138 3' exoribonuclease family, domain 1 A388_03473 PF03725 3' exoribonuclease family, domain 2 A388_03473 PF00575 S1 RNA binding domain A388_03473 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain A388_03474 PF00312 Ribosomal protein S15 A388_03476 PF13538 UvrD-like helicase C-terminal domain A388_03477 PF13361 UvrD-like helicase C-terminal domain A388_03477 PF00580 UvrD/REP helicase N-terminal domain A388_03477 PF12705 PD-(D/E)XK nuclease superfamily A388_03478 PF17946 RecC C-terminal domain A388_03480 PF03976 Polyphosphate kinase 2 (PPK2) A388_03482 PF01209 ubiE/COQ5 methyltransferase family A388_03484 PF03109 ABC1 family A388_03485 PF01494 FAD binding domain A388_03486 PF01502 Phosphoribosyl-AMP cyclohydrolase A388_03489 PF13244 Domain of unknown function (DUF4040) A388_03489 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus A388_03489 PF00361 Proton-conducting membrane transporter A388_03489 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter A388_03490 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L A388_03491 PF00361 Proton-conducting membrane transporter A388_03493 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) A388_03495 PF02033 Ribosome-binding factor A A388_03496 PF04760 Translation initiation factor IF-2, N-terminal region A388_03496 PF08364 Bacterial translation initiation factor IF-2 associated region A388_03496 PF11987 Translation-initiation factor 2 A388_03496 PF00009 Elongation factor Tu GTP binding domain A388_03497 PF13184 NusA-like KH domain A388_03497 PF08529 NusA N-terminal domain A388_03497 PF00575 S1 RNA binding domain A388_03498 PF02576 RimP N-terminal domain A388_03498 PF17384 RimP C-terminal SH3 domain A388_03502 PF03840 Preprotein translocase SecG subunit A388_03503 PF00121 Triosephosphate isomerase A388_03504 PF00437 Type II/IV secretion system protein A388_03504 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain A388_03505 PF00482 Type II secretion system (T2SS), protein F A388_03506 PF06750 Bacterial Peptidase A24 N-terminal domain A388_03506 PF01478 Type IV leader peptidase family A388_03507 PF01121 Dephospho-CoA kinase A388_03509 PF00588 SpoU rRNA Methylase family A388_03509 PF08032 RNA 2'-O ribose methyltransferase substrate binding A388_03510 PF06865 Pyrimidine/purine nucleoside phosphorylase A388_03512 PF02463 RecF/RecN/SMC N terminal domain A388_03513 PF02622 Uncharacterized ACR, COG1678 A388_03514 PF03652 Holliday junction resolvase A388_03515 PF13533 Biotin-lipoyl like A388_03518 PF13737 Transposase DDE domain A388_03521 PF02805 Metal binding domain of Ada A388_03521 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain A388_03521 PF12833 Helix-turn-helix domain A388_03521 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain A388_03522 PF01066 CDP-alcohol phosphatidyltransferase A388_03524 PF02151 UvrB/uvrC motif A388_03524 PF01541 GIY-YIG catalytic domain A388_03524 PF08459 UvrC Helix-hairpin-helix N-terminal A388_03528 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain A388_03528 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain A388_03528 PF00378 Enoyl-CoA hydratase/isomerase A388_03529 PF02803 Thiolase, C-terminal domain A388_03529 PF00108 Thiolase, N-terminal domain A388_03532 PF09278 MerR, DNA binding A388_03532 PF00376 MerR family regulatory protein A388_03534 PF01323 DSBA-like thioredoxin domain A388_03537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03537 PF00183 Hsp90 protein A388_03540 PF13726 Na+-H+ antiporter family A388_03540 PF03553 Na+/H+ antiporter family A388_03545 PF04998 RNA polymerase Rpb1, domain 5 A388_03545 PF04997 RNA polymerase Rpb1, domain 1 A388_03545 PF00623 RNA polymerase Rpb1, domain 2 A388_03545 PF04983 RNA polymerase Rpb1, domain 3 A388_03545 PF05000 RNA polymerase Rpb1, domain 4 A388_03546 PF00562 RNA polymerase Rpb2, domain 6 A388_03546 PF04561 RNA polymerase Rpb2, domain 2 A388_03546 PF10385 RNA polymerase beta subunit external 1 domain A388_03546 PF04560 RNA polymerase Rpb2, domain 7 A388_03546 PF04565 RNA polymerase Rpb2, domain 3 A388_03546 PF04563 RNA polymerase beta subunit A388_03547 PF00542 Ribosomal protein L7/L12 C-terminal domain A388_03547 PF16320 Ribosomal protein L7/L12 dimerisation domain A388_03548 PF00466 Ribosomal protein L10 A388_03549 PF00687 Ribosomal protein L1p/L10e family A388_03550 PF03946 Ribosomal protein L11, N-terminal domain A388_03550 PF00298 Ribosomal protein L11, RNA binding domain A388_03551 PF02357 Transcription termination factor nusG A388_03551 PF00467 KOW motif A388_03552 PF00584 SecE/Sec61-gamma subunits of protein translocation complex A388_03554 PF00009 Elongation factor Tu GTP binding domain A388_03554 PF03144 Elongation factor Tu domain 2 A388_03554 PF03143 Elongation factor Tu C-terminal domain A388_03559 PF00425 chorismate binding enzyme A388_03559 PF04715 Anthranilate synthase component I, N terminal region A388_03560 PF13419 Haloacid dehalogenase-like hydrolase A388_03561 PF12401 Protein of unknown function (DUF2662) A388_03561 PF00498 FHA domain A388_03562 PF00263 Bacterial type II and III secretion system protein A388_03562 PF03958 Bacterial type II/III secretion system short domain A388_03565 PF00816 H-NS histone family A388_03570 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain A388_03570 PF03900 Porphobilinogen deaminase, C-terminal domain A388_03571 PF04397 LytTr DNA-binding domain A388_03571 PF00072 Response regulator receiver domain A388_03572 PF06580 Histidine kinase A388_03572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03572 PF07694 5TMR of 5TMR-LYT A388_03573 PF00206 Lyase A388_03573 PF14698 Argininosuccinate lyase C-terminal A388_03574 PF04362 Bacterial Fe(2+) trafficking A388_03575 PF01895 PhoU domain A388_03576 PF02321 Outer membrane efflux protein A388_03577 PF00892 EamA-like transporter family A388_03580 PF13667 ThiC-associated domain A388_03580 PF01964 Radical SAM ThiC family A388_03581 PF00293 NUDIX domain A388_03582 PF00149 Calcineurin-like phosphoesterase A388_03583 PF01258 Prokaryotic dksA/traR C4-type zinc finger A388_03584 PF00749 tRNA synthetases class I (E and Q), catalytic domain A388_03585 PF01098 Cell cycle protein A388_03586 PF02875 Mur ligase family, glutamate ligase domain A388_03586 PF08245 Mur ligase middle domain A388_03588 PF07664 Ferrous iron transport protein B C terminus A388_03588 PF07670 Nucleoside recognition A388_03588 PF02421 Ferrous iron transport protein B A388_03590 PF00589 Phage integrase family A388_03590 PF02899 Phage integrase, N-terminal SAM-like domain A388_03591 PF10411 Disulfide bond isomerase protein N-terminus A388_03591 PF13098 Thioredoxin-like domain A388_03592 PF03447 Homoserine dehydrogenase, NAD binding domain A388_03592 PF00742 Homoserine dehydrogenase A388_03592 PF01842 ACT domain A388_03593 PF00291 Pyridoxal-phosphate dependent enzyme A388_03594 PF00768 D-alanyl-D-alanine carboxypeptidase A388_03595 PF00072 Response regulator receiver domain A388_03595 PF00196 Bacterial regulatory proteins, luxR family A388_03596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03596 PF00512 His Kinase A (phospho-acceptor) domain A388_03597 PF02954 Bacterial regulatory protein, Fis family A388_03597 PF00072 Response regulator receiver domain A388_03597 PF00158 Sigma-54 interaction domain A388_03598 PF00595 PDZ domain A388_03598 PF03572 Peptidase family S41 A388_03599 PF06415 BPG-independent PGAM N-terminus (iPGM_N) A388_03599 PF01676 Metalloenzyme superfamily A388_03600 PF03739 Lipopolysaccharide export system permease LptF/LptG A388_03602 PF00883 Cytosol aminopeptidase family, catalytic domain A388_03602 PF02789 Cytosol aminopeptidase family, N-terminal domain A388_03606 PF00677 Lumazine binding domain A388_03608 PF01872 RibD C-terminal domain A388_03608 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region A388_03609 PF03477 ATP cone domain A388_03610 PF00909 Ammonium Transporter Family A388_03611 PF00543 Nitrogen regulatory protein P-II A388_03613 PF05052 MerE protein A388_03615 PF00916 Sulfate permease family A388_03615 PF01740 STAS domain A388_03618 PF01252 Signal peptidase (SPase) II A388_03620 PF13411 MerR HTH family regulatory protein A388_03621 PF03743 Bacterial conjugation TrbI-like protein A388_03622 PF02796 Helix-turn-helix domain of resolvase A388_03622 PF00239 Resolvase, N terminal domain A388_03625 PF00809 Pterin binding enzyme A388_03626 PF00893 Small Multidrug Resistance protein A388_03627 PF13427 Domain of unknown function (DUF4111) A388_03627 PF01909 Nucleotidyltransferase domain A388_03629 PF00583 Acetyltransferase (GNAT) family A388_03631 PF13495 Phage integrase, N-terminal SAM-like domain A388_03631 PF00589 Phage integrase family A388_03632 PF13610 DDE domain A388_03633 PF01636 Phosphotransferase enzyme family A388_03634 PF13610 DDE domain A388_03635 PF01593 Flavin containing amine oxidoreductase A388_03636 PF02678 Pirin A388_03636 PF05726 Pirin C-terminal cupin domain A388_03637 PF00857 Isochorismatase family A388_03638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03639 PF00171 Aldehyde dehydrogenase family A388_03640 PF00202 Aminotransferase class-III A388_03641 PF00155 Aminotransferase class I and II A388_03641 PF00392 Bacterial regulatory proteins, gntR family A388_03642 PF00324 Amino acid permease A388_03644 PF03591 AzlC protein A388_03646 PF00436 Single-strand binding protein family A388_03647 PF07690 Major Facilitator Superfamily A388_03649 PF08543 Phosphomethylpyrimidine kinase A388_03649 PF03070 TENA/THI-4/PQQC family A388_03649 PF02581 Thiamine monophosphate synthase A388_03650 PF06942 GlpM protein A388_03652 PF00107 Zinc-binding dehydrogenase A388_03652 PF08240 Alcohol dehydrogenase GroES-like domain A388_03653 PF00440 Bacterial regulatory proteins, tetR family A388_03653 PF16925 Tetracyclin repressor-like, C-terminal domain A388_03654 PF00005 ABC transporter A388_03654 PF17760 UvrA interaction domain A388_03654 PF17755 UvrA DNA-binding domain A388_03655 PF00990 Diguanylate cyclase, GGDEF domain A388_03655 PF17158 Membrane-associated sensor, integral membrane domain A388_03657 PF02028 BCCT, betaine/carnitine/choline family transporter A388_03659 PF00474 Sodium:solute symporter family A388_03660 PF04341 Protein of unknown function, DUF485 A388_03661 PF00672 HAMP domain A388_03661 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03661 PF00512 His Kinase A (phospho-acceptor) domain A388_03661 PF01627 Hpt domain A388_03661 PF00072 Response regulator receiver domain A388_03663 PF00072 Response regulator receiver domain A388_03663 PF00196 Bacterial regulatory proteins, luxR family A388_03664 PF03358 NADPH-dependent FMN reductase A388_03665 PF00296 Luciferase-like monooxygenase A388_03666 PF01037 Lrp/AsnC ligand binding domain A388_03667 PF00857 Isochorismatase family A388_03668 PF16177 Acetyl-coenzyme A synthetase N-terminus A388_03668 PF00501 AMP-binding enzyme A388_03668 PF13193 AMP-binding enzyme C-terminal domain A388_03670 PF00924 Mechanosensitive ion channel A388_03671 PF04452 RNA methyltransferase A388_03672 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) A388_03673 PF00724 NADH:flavin oxidoreductase / NADH oxidase family A388_03676 PF00472 RF-1 domain A388_03676 PF03462 PCRF domain A388_03678 PF17768 RecJ OB domain A388_03678 PF02272 DHHA1 domain A388_03678 PF01368 DHH family A388_03679 PF01243 Pyridoxamine 5'-phosphate oxidase A388_03679 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region A388_03680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain A388_03680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III A388_03680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I A388_03680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II A388_03681 PF00571 CBS domain A388_03681 PF00478 IMP dehydrogenase / GMP reductase domain A388_03682 PF03692 Putative zinc- or iron-chelating domain A388_03683 PF00258 Flavodoxin A388_03683 PF01613 Flavin reductase like domain A388_03684 PF07715 TonB-dependent Receptor Plug Domain A388_03684 PF00593 TonB dependent receptor A388_03685 PF01169 Uncharacterized protein family UPF0016 A388_03687 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) A388_03687 PF00364 Biotin-requiring enzyme A388_03687 PF02817 e3 binding domain A388_03688 PF17831 Pyruvate dehydrogenase E1 component middle domain A388_03688 PF00456 Transketolase, thiamine diphosphate binding domain A388_03689 PF01551 Peptidase family M23 A388_03691 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase A388_03692 PF00091 Tubulin/FtsZ family, GTPase domain A388_03692 PF12327 FtsZ family, C-terminal domain A388_03693 PF02491 SHS2 domain inserted in FTSA A388_03694 PF03799 Cell division protein FtsQ A388_03694 PF08478 POTRA domain, FtsQ-type A388_03695 PF07478 D-ala D-ala ligase C-terminus A388_03695 PF01820 D-ala D-ala ligase N-terminus A388_03696 PF02875 Mur ligase family, glutamate ligase domain A388_03696 PF01225 Mur ligase family, catalytic domain A388_03696 PF08245 Mur ligase middle domain A388_03697 PF03033 Glycosyltransferase family 28 N-terminal domain A388_03697 PF04101 Glycosyltransferase family 28 C-terminal domain A388_03698 PF02951 Prokaryotic glutathione synthetase, N-terminal domain A388_03698 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain A388_03700 PF00593 TonB dependent receptor A388_03700 PF07715 TonB-dependent Receptor Plug Domain A388_03701 PF00156 Phosphoribosyl transferase domain A388_03702 PF03372 Endonuclease/Exonuclease/phosphatase family A388_03703 PF03960 ArsC family A388_03705 PF07859 alpha/beta hydrolase fold A388_03706 PF00990 Diguanylate cyclase, GGDEF domain A388_03706 PF07694 5TMR of 5TMR-LYT A388_03707 PF11412 Disulphide bond corrector protein DsbC A388_03707 PF02683 Cytochrome C biogenesis protein transmembrane region A388_03713 PF00576 HIUase/Transthyretin family A388_03714 PF00860 Permease family A388_03716 PF01494 FAD binding domain A388_03717 PF03561 Allantoicase repeat A388_03718 PF04115 Ureidoglycolate lyase A388_03719 PF00204 DNA gyrase B A388_03719 PF00986 DNA gyrase B subunit, carboxyl terminus A388_03719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03719 PF01751 Toprim domain A388_03720 PF05728 Uncharacterised protein family (UPF0227) A388_03726 PF01510 N-acetylmuramoyl-L-alanine amidase A388_03726 PF01476 LysM domain A388_03726 PF01471 Putative peptidoglycan binding domain A388_03727 PF04717 Type VI secretion system, phage-baseplate injector A388_03728 PF02600 Disulfide bond formation protein DsbB A388_03729 PF04262 Glutamate-cysteine ligase A388_03732 PF04286 Protein of unknown function (DUF445) A388_03733 PF00155 Aminotransferase class I and II A388_03734 PF01554 MatE A388_03735 PF00106 short chain dehydrogenase A388_03737 PF00486 Transcriptional regulatory protein, C terminal A388_03737 PF00072 Response regulator receiver domain A388_03738 PF11808 Phosphate regulon sensor protein PhoR A388_03738 PF00989 PAS fold A388_03738 PF00512 His Kinase A (phospho-acceptor) domain A388_03738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase A388_03740 PF02666 Phosphatidylserine decarboxylase A388_03741 PF00581 Rhodanese-like domain A388_03742 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family A388_03742 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain A388_03743 PF02580 D-Tyr-tRNA(Tyr) deacylase A388_03748 PF00925 GTP cyclohydrolase II A388_03748 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase A388_03749 PF00885 6,7-dimethyl-8-ribityllumazine synthase A388_03750 PF01029 NusB family A388_03751 PF02769 AIR synthase related protein, C-terminal domain A388_03751 PF00586 AIR synthase related protein, N-terminal domain A388_03752 PF04608 Phosphatidylglycerophosphatase A A388_03753 PF00132 Bacterial transferase hexapeptide (six repeats) A388_03753 PF14602 Hexapeptide repeat of succinyl-transferase A388_03753 PF12804 MobA-like NTP transferase domain A388_03754 PF01380 SIS domain A388_03756 PF08676 MutL C terminal dimerisation domain A388_03756 PF01119 DNA mismatch repair protein, C-terminal domain A388_03757 PF00145 C-5 cytosine-specific DNA methylase A388_03759 PF01177 Asp/Glu/Hydantoin racemase A388_03762 PF00491 Arginase family A388_03763 PF01979 Amidohydrolase family A388_03764 PF00324 Amino acid permease A388_03765 PF00221 Aromatic amino acid lyase A388_03766 PF17391 Urocanase N-terminal domain A388_03766 PF17392 Urocanase C-terminal domain A388_03766 PF01175 Urocanase Rossmann-like domain A388_03767 PF05962 HutD A388_03768 PF00392 Bacterial regulatory proteins, gntR family A388_03768 PF07702 UTRA domain A388_03770 PF02492 CobW/HypB/UreG, nucleotide-binding domain A388_03770 PF07683 Cobalamin synthesis protein cobW C-terminal domain A388_03772 PF00324 Amino acid permease A388_03774 PF14497 Glutathione S-transferase, C-terminal domain A388_03774 PF02798 Glutathione S-transferase, N-terminal domain A388_03775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A388_03777 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily A388_03778 PF04463 Protein of unknown function (DUF523) A388_03779 PF01554 MatE A388_03780 PF01758 Sodium Bile acid symporter family A388_03781 PF00857 Isochorismatase family A388_03782 PF00701 Dihydrodipicolinate synthetase family A388_03784 PF01259 SAICAR synthetase A388_03786 PF01226 Formate/nitrite transporter A388_03787 PF12002 MgsA AAA+ ATPase C terminal A388_03787 PF00004 ATPase family associated with various cellular activities (AAA) A388_03787 PF16193 AAA C-terminal domain A388_03788 PF07995 Glucose / Sorbosone dehydrogenase A388_03789 PF03692 Putative zinc- or iron-chelating domain A388_03790 PF07043 Protein of unknown function (DUF1328) A388_03793 PF00730 HhH-GPD superfamily base excision DNA repair protein A388_03793 PF10576 Iron-sulfur binding domain of endonuclease III A388_03793 PF14815 NUDIX domain A388_03793 PF00633 Helix-hairpin-helix motif A388_03796 PF03352 Methyladenine glycosylase A388_03797 PF08240 Alcohol dehydrogenase GroES-like domain A388_03797 PF00107 Zinc-binding dehydrogenase A388_03798 PF00392 Bacterial regulatory proteins, gntR family A388_03798 PF00155 Aminotransferase class I and II A388_03800 PF03466 LysR substrate binding domain A388_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03801 PF00248 Aldo/keto reductase family A388_03802 PF07690 Major Facilitator Superfamily A388_03804 PF05173 Dihydrodipicolinate reductase, C-terminus A388_03804 PF01113 Dihydrodipicolinate reductase, N-terminus A388_03806 PF00684 DnaJ central domain A388_03806 PF01556 DnaJ C terminal domain A388_03806 PF00226 DnaJ domain A388_03808 PF00873 AcrB/AcrD/AcrF family A388_03809 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion A388_03810 PF08361 MAATS-type transcriptional repressor, C-terminal region A388_03810 PF00440 Bacterial regulatory proteins, tetR family A388_03811 PF00311 Phosphoenolpyruvate carboxylase A388_03812 PF00860 Permease family A388_03813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family A388_03813 PF03466 LysR substrate binding domain A388_03816 PF00920 Dehydratase family A388_03817 PF02911 Formyl transferase, C-terminal domain A388_03817 PF00551 Formyl transferase A388_03818 PF01189 16S rRNA methyltransferase RsmB/F A388_03818 PF01029 NusB family A388_03820 PF00209 Sodium:neurotransmitter symporter family A388_03822 PF02798 Glutathione S-transferase, N-terminal domain A388_p00005 PF13610 DDE domain A388_p00006 PF01636 Phosphotransferase enzyme family A388_p00007 PF13610 DDE domain A388_p00011 PF00905 Penicillin binding protein transpeptidase domain A388_p00012 PF00665 Integrase core domain A388_p00012 PF13276 HTH-like domain A388_p00012 PF13333 Integrase core domain A388_p00013 PF01527 Transposase A388_p00016 PF00239 Resolvase, N terminal domain A388_p00016 PF02796 Helix-turn-helix domain of resolvase A388_p00017 PF13333 Integrase core domain A388_p00017 PF00665 Integrase core domain A388_p00017 PF13276 HTH-like domain A388_p00018 PF13276 HTH-like domain A388_p00018 PF00665 Integrase core domain A388_p00019 PF05016 ParE toxin of type II toxin-antitoxin system, parDE A388_p00023 PF13614 AAA domain A388_p00025 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) A388_p00025 PF11867 Domain of unknown function (DUF3387) A388_p00025 PF18766 SWI2/SNF2 ATPase A388_p00031 PF12161 HsdM N-terminal domain A388_p00031 PF02384 N-6 DNA Methylase A388_p00033 PF13610 DDE domain A388_p00036 PF00593 TonB dependent receptor A388_p00036 PF07715 TonB-dependent Receptor Plug Domain