A388_00001	PF00579	tRNA synthetases class I (W and Y)
A388_00002	PF03702	Uncharacterised protein family (UPF0075)
A388_00003	PF00561	alpha/beta hydrolase fold
A388_00004	PF01521	Iron-sulphur cluster biosynthesis
A388_00008	PF00005	ABC transporter
A388_00008	PF12848	ABC transporter
A388_00009	PF09335	A388_00009
A388_00010	PF07361	Cytochrome b562
A388_00011	PF00204	DNA gyrase B
A388_00011	PF00986	DNA gyrase B subunit, carboxyl terminus
A388_00011	PF01751	Toprim domain
A388_00011	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_00012	PF02463	RecF/RecN/SMC N terminal domain
A388_00013	PF00712	DNA polymerase III beta subunit, N-terminal domain
A388_00013	PF02767	DNA polymerase III beta subunit, central domain
A388_00013	PF02768	DNA polymerase III beta subunit, C-terminal domain
A388_00014	PF00308	Bacterial dnaA  protein
A388_00014	PF08299	Bacterial dnaA protein helix-turn-helix
A388_00014	PF11638	DnaA N-terminal domain
A388_00015	PF00468	Ribosomal protein L34
A388_00016	PF00825	Ribonuclease P
A388_00017	PF01809	A388_00017
A388_00018	PF02096	60Kd inner membrane protein
A388_00018	PF14849	YidC periplasmic domain
A388_00019	PF01926	50S ribosome-binding GTPase
A388_00019	PF10396	GTP-binding protein TrmE N-terminus
A388_00019	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
A388_00020	PF02583	Metal-sensitive transcriptional repressor
A388_00021	PF01545	Cation efflux family
A388_00022	PF10411	Disulfide bond isomerase protein N-terminus
A388_00022	PF13098	Thioredoxin-like domain
A388_00023	PF04226	A388_00023
A388_00024	PF00156	Phosphoribosyl transferase domain
A388_00026	PF01979	Amidohydrolase family
A388_00027	PF00355	Rieske [2Fe-2S] domain
A388_00028	PF03738	Glutathionylspermidine synthase preATP-grasp
A388_00030	PF03741	A388_00030
A388_00031	PF01569	PAP2 superfamily
A388_00032	PF06772	A388_00032
A388_00033	PF01225	Mur ligase family, catalytic domain
A388_00033	PF02875	Mur ligase family, glutamate ligase domain
A388_00033	PF08245	Mur ligase middle domain
A388_00034	PF04342	A388_00034
A388_00035	PF00731	AIR carboxylase
A388_00036	PF02222	ATP-grasp domain
A388_00037	PF01471	Putative peptidoglycan binding domain
A388_00037	PF13406	Transglycosylase SLT domain
A388_00039	PF00413	Matrixin
A388_00040	PF00413	Matrixin
A388_00041	PF00012	Hsp70 protein
A388_00042	PF01025	GrpE
A388_00043	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_00043	PF03466	LysR substrate binding domain
A388_00047	PF07859	alpha/beta hydrolase fold
A388_00048	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
A388_00051	PF12796	Ankyrin repeats (3 copies)
A388_00052	PF03358	NADPH-dependent FMN reductase
A388_00053	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A388_00054	PF01252	A388_00054
A388_00055	PF00133	tRNA synthetases class I (I, L, M and V)
A388_00055	PF06827	Zinc finger found in FPG and IleRS
A388_00055	PF08264	Anticodon-binding domain of tRNA
A388_00056	PF01687	Riboflavin kinase
A388_00056	PF06574	FAD synthetase
A388_00057	PF03595	Voltage-dependent anion channel
A388_00058	PF01048	Phosphorylase superfamily
A388_00059	PF00440	Bacterial regulatory proteins, tetR family
A388_00059	PF08362	YcdC-like protein, C-terminal region
A388_00060	PF00005	ABC transporter
A388_00061	PF00528	Binding-protein-dependent transport system inner membrane component
A388_00062	PF00296	Luciferase-like monooxygenase
A388_00063	PF13379	NMT1-like family
A388_00064	PF09084	NMT1/THI5 like
A388_00065	PF00583	Acetyltransferase (GNAT) family
A388_00065	PF00696	Amino acid kinase family
A388_00066	PF11776	Domain of unknown function (DUF3315)
A388_00067	PF11776	Domain of unknown function (DUF3315)
A388_00068	PF00106	short chain dehydrogenase
A388_00069	PF13419	Haloacid dehalogenase-like hydrolase
A388_00070	PF13489	Methyltransferase domain
A388_00071	PF01323	DSBA-like thioredoxin domain
A388_00072	PF00440	Bacterial regulatory proteins, tetR family
A388_00073	PF00440	Bacterial regulatory proteins, tetR family
A388_00074	PF00175	Oxidoreductase NAD-binding domain
A388_00074	PF00970	Oxidoreductase FAD-binding domain
A388_00075	PF00487	A388_00075
A388_00076	PF01138	3' exoribonuclease family, domain 1
A388_00076	PF03725	3' exoribonuclease family, domain 2
A388_00077	PF04185	Phosphoesterase family
A388_00077	PF05506	A388_00077
A388_00079	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
A388_00079	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
A388_00080	PF01510	N-acetylmuramoyl-L-alanine amidase
A388_00081	PF03023	A388_00081
A388_00082	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A388_00082	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
A388_00083	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A388_00083	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
A388_00084	PF02706	Chain length determinant protein
A388_00084	PF13614	AAA domain
A388_00084	PF13807	A388_00084
A388_00085	PF01451	Low molecular weight phosphotyrosine protein phosphatase
A388_00086	PF02563	Polysaccharide biosynthesis/export protein
A388_00087	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
A388_00087	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
A388_00087	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
A388_00088	PF01943	A388_00088
A388_00089	PF04230	A388_00089
A388_00090	PF00535	Glycosyl transferase family 2
A388_00092	PF00535	Glycosyl transferase family 2
A388_00093	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
A388_00093	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
A388_00093	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
A388_00094	PF00534	Glycosyl transferases group 1
A388_00094	PF13579	Glycosyl transferase 4-like domain
A388_00095	PF02397	A388_00095
A388_00096	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_00097	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
A388_00098	PF02719	Polysaccharide biosynthesis protein
A388_00098	PF13727	CoA-binding domain
A388_00099	PF00483	Nucleotidyl transferase
A388_00100	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
A388_00100	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
A388_00101	PF00342	Phosphoglucose isomerase
A388_00102	PF01370	NAD dependent epimerase/dehydratase family
A388_00103	PF00884	Sulfatase
A388_00106	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A388_00106	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A388_00106	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A388_00106	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A388_00107	PF02652	A388_00107
A388_00108	PF00392	Bacterial regulatory proteins, gntR family
A388_00108	PF07729	FCD domain
A388_00109	PF01070	FMN-dependent dehydrogenase
A388_00110	PF01565	FAD binding domain
A388_00110	PF09330	D-lactate dehydrogenase, membrane binding
A388_00111	PF00155	Aminotransferase class I and II
A388_00112	PF00392	Bacterial regulatory proteins, gntR family
A388_00112	PF07729	FCD domain
A388_00113	PF13714	Phosphoenolpyruvate phosphomutase
A388_00114	PF00285	Citrate synthase
A388_00115	PF00330	Aconitase family (aconitate hydratase)
A388_00115	PF00694	Aconitase C-terminal domain
A388_00117	PF13548	A388_00117
A388_00118	PF00583	Acetyltransferase (GNAT) family
A388_00120	PF16133	A388_00120
A388_00121	PF00106	short chain dehydrogenase
A388_00122	PF06210	A388_00122
A388_00123	PF00849	RNA pseudouridylate synthase
A388_00124	PF06877	Regulator of ribonuclease activity B
A388_00125	PF12680	SnoaL-like domain
A388_00126	PF00593	TonB dependent receptor
A388_00126	PF07715	TonB-dependent Receptor Plug Domain
A388_00127	PF07786	A388_00127
A388_00128	PF01037	AsnC family
A388_00128	PF13412	Winged helix-turn-helix DNA-binding
A388_00129	PF01266	FAD dependent oxidoreductase
A388_00130	PF00842	Alanine racemase, C-terminal domain
A388_00130	PF01168	Alanine racemase, N-terminal domain
A388_00131	PF01042	Endoribonuclease L-PSP
A388_00132	PF00324	Amino acid permease
A388_00133	PF00324	Amino acid permease
A388_00134	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_00134	PF03466	LysR substrate binding domain
A388_00135	PF00171	Aldehyde dehydrogenase family
A388_00136	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
A388_00136	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
A388_00137	PF00501	AMP-binding enzyme
A388_00137	PF13193	AMP-binding enzyme C-terminal domain
A388_00138	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00138	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00138	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00139	PF00378	Enoyl-CoA hydratase/isomerase family
A388_00140	PF16113	A388_00140
A388_00141	PF07690	Major Facilitator Superfamily
A388_00142	PF00196	Bacterial regulatory proteins, luxR family
A388_00142	PF03472	Autoinducer binding domain
A388_00143	PF01370	NAD dependent epimerase/dehydratase family
A388_00143	PF12697	Alpha/beta hydrolase family
A388_00144	PF01648	4'-phosphopantetheinyl transferase superfamily
A388_00147	PF01722	BolA-like protein
A388_00148	PF04247	A388_00148
A388_00149	PF13614	AAA domain
A388_00151	PF01810	A388_00151
A388_00152	PF09335	A388_00152
A388_00153	PF07681	A388_00153
A388_00154	PF04286	A388_00154
A388_00155	PF00117	Glutamine amidotransferase class-I
A388_00155	PF00958	GMP synthase C terminal domain
A388_00155	PF02540	NAD synthase
A388_00156	PF01909	Nucleotidyltransferase domain
A388_00156	PF13427	A388_00156
A388_00157	PF03551	Transcriptional regulator PadR-like family
A388_00158	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
A388_00159	PF02678	Pirin
A388_00159	PF05726	Pirin C-terminal cupin domain
A388_00160	PF02566	OsmC-like protein
A388_00161	PF02798	Glutathione S-transferase, N-terminal domain
A388_00161	PF14497	Glutathione S-transferase, C-terminal domain
A388_00162	PF05036	Sporulation related domain
A388_00163	PF00750	tRNA synthetases class I (R)
A388_00163	PF03485	Arginyl tRNA synthetase N terminal domain
A388_00163	PF05746	DALR anticodon binding domain
A388_00164	PF00390	Malic enzyme, N-terminal domain
A388_00164	PF03949	Malic enzyme, NAD binding domain
A388_00165	PF04261	Dyp-type peroxidase family
A388_00166	PF01810	A388_00166
A388_00167	PF00950	A388_00167
A388_00168	PF00005	ABC transporter
A388_00169	PF01475	Ferric uptake regulator family
A388_00170	PF01297	Periplasmic solute binding protein family
A388_00171	PF03899	A388_00171
A388_00172	PF00119	ATP synthase A chain
A388_00173	PF00137	ATP synthase subunit C
A388_00174	PF00430	ATP synthase B/B' CF(0)
A388_00175	PF00213	ATP synthase delta (OSCP) subunit
A388_00176	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A388_00176	PF00306	ATP synthase alpha/beta chain, C terminal domain
A388_00176	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A388_00177	PF00231	ATP synthase
A388_00178	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A388_00178	PF02874	ATP synthase alpha/beta family, beta-barrel domain
A388_00179	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
A388_00181	PF00255	Glutathione peroxidase
A388_00182	PF12833	Helix-turn-helix domain
A388_00183	PF07690	Major Facilitator Superfamily
A388_00184	PF00440	Bacterial regulatory proteins, tetR family
A388_00185	PF00892	EamA-like transporter family
A388_00186	PF01300	Telomere recombination
A388_00187	PF02481	DNA recombination-mediator protein A
A388_00188	PF01476	LysM domain
A388_00189	PF01327	Polypeptide deformylase
A388_00190	PF11162	A388_00190
A388_00191	PF00593	TonB dependent receptor
A388_00191	PF07715	TonB-dependent Receptor Plug Domain
A388_00193	PF09995	A388_00193
A388_00194	PF00440	Bacterial regulatory proteins, tetR family
A388_00197	PF13527	Acetyltransferase (GNAT) domain
A388_00198	PF00291	Pyridoxal-phosphate dependent enzyme
A388_00199	PF01464	Transglycosylase SLT domain
A388_00200	PF03358	NADPH-dependent FMN reductase
A388_00201	PF11158	A388_00201
A388_00202	PF13411	MerR HTH family regulatory protein
A388_00203	PF13449	Esterase-like activity of phytase
A388_00204	PF04055	Radical SAM superfamily
A388_00204	PF08497	A388_00204
A388_00204	PF11842	A388_00204
A388_00205	PF10881	A388_00205
A388_00206	PF01042	Endoribonuclease L-PSP
A388_00207	PF00817	impB/mucB/samB family
A388_00207	PF11798	IMS family HHH motif
A388_00207	PF11799	impB/mucB/samB family C-terminal domain
A388_00208	PF01183	Glycosyl hydrolases family 25
A388_00209	PF07690	Major Facilitator Superfamily
A388_00210	PF03641	Possible lysine decarboxylase
A388_00211	PF00571	CBS domain
A388_00211	PF03471	Transporter associated domain
A388_00211	PF03741	A388_00211
A388_00212	PF02810	SEC-C motif
A388_00213	PF03458	A388_00213
A388_00214	PF00083	Sugar (and other) transporter
A388_00215	PF00521	DNA gyrase/topoisomerase IV, subunit A
A388_00215	PF03989	DNA gyrase C-terminal domain, beta-propeller
A388_00216	PF00501	AMP-binding enzyme
A388_00216	PF13193	AMP-binding enzyme C-terminal domain
A388_00218	PF01124	MAPEG family
A388_00219	PF00719	Inorganic pyrophosphatase
A388_00220	PF03573	outer membrane porin, OprD family
A388_00222	PF09694	A388_00222
A388_00223	PF00701	Dihydrodipicolinate synthetase family
A388_00224	PF00596	Class II Aldolase and Adducin N-terminal domain
A388_00225	PF00155	Aminotransferase class I and II
A388_00225	PF00392	Bacterial regulatory proteins, gntR family
A388_00227	PF08721	TnsA endonuclease C terminal
A388_00227	PF08722	TnsA endonuclease N terminal
A388_00228	PF00665	Integrase core domain
A388_00228	PF09299	Mu transposase, C-terminal
A388_00229	PF05621	A388_00229
A388_00230	PF06527	A388_00230
A388_00232	PF13738	Pyridine nucleotide-disulphide oxidoreductase
A388_00233	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_00234	PF03358	NADPH-dependent FMN reductase
A388_00235	PF01758	Sodium Bile acid symporter family
A388_00236	PF01451	Low molecular weight phosphotyrosine protein phosphatase
A388_00237	PF01022	Bacterial regulatory protein, arsR family
A388_00238	PF03960	ArsC family
A388_00240	PF13411	MerR HTH family regulatory protein
A388_00241	PF01545	Cation efflux family
A388_00242	PF01252	A388_00242
A388_00243	PF01610	A388_00243
A388_00243	PF13542	A388_00243
A388_00243	PF14690	A388_00243
A388_00245	PF01131	DNA topoisomerase
A388_00245	PF01396	A388_00245
A388_00245	PF01751	Toprim domain
A388_00246	PF00436	Single-strand binding protein family
A388_00248	PF00809	Pterin binding enzyme
A388_00249	PF00583	Acetyltransferase (GNAT) family
A388_00250	PF02411	A388_00250
A388_00251	PF13610	A388_00251
A388_00252	PF11809	A388_00252
A388_00253	PF13411	MerR HTH family regulatory protein
A388_00254	PF00403	Heavy-metal-associated domain
A388_00254	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A388_00254	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_00255	PF03203	A388_00255
A388_00256	PF00403	Heavy-metal-associated domain
A388_00257	PF00376	MerR family regulatory protein
A388_00257	PF09278	MerR, DNA binding
A388_00258	PF00440	Bacterial regulatory proteins, tetR family
A388_00258	PF02909	Tetracyclin repressor, C-terminal all-alpha domain
A388_00259	PF07690	Major Facilitator Superfamily
A388_00260	PF00892	EamA-like transporter family
A388_00261	PF13610	A388_00261
A388_00262	PF00302	Chloramphenicol acetyltransferase
A388_00263	PF03400	A388_00263
A388_00264	PF01526	A388_00264
A388_00264	PF13700	A388_00264
A388_00265	PF00239	Resolvase, N terminal domain
A388_00265	PF02796	Helix-turn-helix domain of resolvase
A388_00266	PF13354	Beta-lactamase enzyme family
A388_00267	PF01526	A388_00267
A388_00267	PF13700	A388_00267
A388_00268	PF00239	Resolvase, N terminal domain
A388_00269	PF13610	A388_00269
A388_00271	PF13489	Methyltransferase domain
A388_00272	PF04828	Glutathione-dependent formaldehyde-activating enzyme
A388_00275	PF07690	Major Facilitator Superfamily
A388_00276	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_00276	PF03466	LysR substrate binding domain
A388_00277	PF00892	EamA-like transporter family
A388_00280	PF00248	Aldo/keto reductase family
A388_00281	PF12833	Helix-turn-helix domain
A388_00282	PF00440	Bacterial regulatory proteins, tetR family
A388_00283	PF02627	Carboxymuconolactone decarboxylase family
A388_00284	PF01638	HxlR-like helix-turn-helix
A388_00287	PF01638	HxlR-like helix-turn-helix
A388_00288	PF02525	Flavodoxin-like fold
A388_00289	PF12833	Helix-turn-helix domain
A388_00290	PF13302	Acetyltransferase (GNAT) domain
A388_00292	PF02705	A388_00292
A388_00294	PF01223	DNA/RNA non-specific endonuclease
A388_00295	PF01810	A388_00295
A388_00297	PF00230	Major intrinsic protein
A388_00298	PF12625	A388_00298
A388_00298	PF12833	Helix-turn-helix domain
A388_00300	PF00977	Histidine biosynthesis protein
A388_00301	PF01636	Phosphotransferase enzyme family
A388_00302	PF00313	'Cold-shock' DNA-binding domain
A388_00302	PF06961	A388_00302
A388_00304	PF00892	EamA-like transporter family
A388_00305	PF01381	Helix-turn-helix
A388_00305	PF07883	Cupin domain
A388_00306	PF00977	Histidine biosynthesis protein
A388_00307	PF01612	3'-5' exonuclease
A388_00308	PF05656	A388_00308
A388_00309	PF00117	Glutamine amidotransferase class-I
A388_00310	PF00475	Imidazoleglycerol-phosphate dehydratase
A388_00311	PF12568	Acetyltransferase (GNAT) domain
A388_00314	PF00583	Acetyltransferase (GNAT) family
A388_00315	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
A388_00315	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
A388_00316	PF00512	His Kinase A (phospho-acceptor) domain
A388_00316	PF00672	HAMP domain
A388_00316	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_00317	PF00072	Response regulator receiver domain
A388_00317	PF00486	Transcriptional regulatory protein, C terminal
A388_00318	PF00575	S1 RNA binding domain
A388_00318	PF09371	Tex-like protein N-terminal domain
A388_00318	PF12836	Helix-hairpin-helix motif
A388_00318	PF16921	A388_00318
A388_00319	PF00484	Carbonic anhydrase
A388_00319	PF00916	A388_00319
A388_00320	PF00106	short chain dehydrogenase
A388_00321	PF01053	Cys/Met metabolism PLP-dependent enzyme
A388_00322	PF00005	ABC transporter
A388_00322	PF12848	ABC transporter
A388_00326	PF02321	Outer membrane efflux protein
A388_00327	PF16576	A388_00327
A388_00328	PF00873	AcrB/AcrD/AcrF family
A388_00329	PF01545	Cation efflux family
A388_00335	PF00324	Amino acid permease
A388_00338	PF00749	tRNA synthetases class I (E and Q), catalytic domain
A388_00340	PF13531	Bacterial extracellular solute-binding protein
A388_00341	PF01795	MraW methylase family
A388_00342	PF04999	A388_00342
A388_00343	PF00905	Penicillin binding protein transpeptidase domain
A388_00343	PF03717	Penicillin-binding Protein dimerisation domain
A388_00344	PF02875	Mur ligase family, glutamate ligase domain
A388_00344	PF08245	Mur ligase middle domain
A388_00345	PF01225	Mur ligase family, catalytic domain
A388_00345	PF02875	Mur ligase family, glutamate ligase domain
A388_00345	PF08245	Mur ligase middle domain
A388_00346	PF00953	Glycosyl transferase family 4
A388_00348	PF08241	Methyltransferase domain
A388_00349	PF00905	Penicillin binding protein transpeptidase domain
A388_00349	PF00912	Transglycosylase
A388_00349	PF17092	A388_00349
A388_00350	PF11104	Type IV pilus assembly protein PilM;
A388_00351	PF05137	A388_00351
A388_00352	PF04350	Pilus assembly protein, PilO
A388_00353	PF04351	Pilus assembly protein, PilP
A388_00354	PF00263	A388_00354
A388_00354	PF03958	Bacterial type II/III secretion system short domain
A388_00354	PF07660	Secretin and TonB N terminus short domain
A388_00354	PF11741	AMIN domain
A388_00355	PF01202	Shikimate kinase
A388_00356	PF01761	3-dehydroquinate synthase
A388_00358	PF00310	Glutamine amidotransferases class-II
A388_00358	PF01493	GXGXG motif
A388_00358	PF01645	Conserved region in glutamate synthase
A388_00358	PF04898	Glutamate synthase central domain
A388_00359	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_00359	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
A388_00360	PF10118	A388_00360
A388_00361	PF04011	LemA family
A388_00362	PF04536	TLP18
A388_00363	PF04536	TLP18
A388_00364	PF00114	Pilin (bacterial filament)
A388_00364	PF07963	Prokaryotic N-terminal methylation motif
A388_00365	PF04932	A388_00365
A388_00365	PF11846	A388_00365
A388_00365	PF15864	A388_00365
A388_00366	PF00210	Ferritin-like domain
A388_00367	PF04324	BFD-like [2Fe-2S] binding domain
A388_00368	PF01042	Endoribonuclease L-PSP
A388_00369	PF02824	TGS domain
A388_00369	PF13328	HD domain
A388_00370	PF01192	RNA polymerase Rpb6
A388_00371	PF00625	Guanylate kinase
A388_00372	PF02401	LytB protein
A388_00373	PF07963	Prokaryotic N-terminal methylation motif
A388_00373	PF12019	Type II transport protein GspH
A388_00374	PF07963	Prokaryotic N-terminal methylation motif
A388_00375	PF07963	Prokaryotic N-terminal methylation motif
A388_00375	PF16074	A388_00375
A388_00377	PF05567	Neisseria PilC beta-propeller domain
A388_00377	PF13519	von Willebrand factor type A domain
A388_00378	PF07963	Prokaryotic N-terminal methylation motif
A388_00378	PF16732	A388_00378
A388_00379	PF07963	Prokaryotic N-terminal methylation motif
A388_00379	PF16732	A388_00379
A388_00380	PF00886	Ribosomal protein S16
A388_00381	PF01782	RimM N-terminal domain
A388_00381	PF05239	PRC-barrel domain
A388_00382	PF01746	tRNA (Guanine-1)-methyltransferase
A388_00383	PF01245	Ribosomal protein L19
A388_00384	PF00561	alpha/beta hydrolase fold
A388_00385	PF03280	Proteobacterial lipase chaperone protein
A388_00386	PF01509	TruB family pseudouridylate synthase (N terminal domain)
A388_00386	PF09157	Pseudouridine synthase II TruB, C-terminal
A388_00386	PF16198	A388_00386
A388_00387	PF01925	A388_00387
A388_00388	PF01814	Hemerythrin HHE cation binding domain
A388_00389	PF00892	EamA-like transporter family
A388_00390	PF00892	EamA-like transporter family
A388_00391	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
A388_00391	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
A388_00392	PF01565	FAD binding domain
A388_00392	PF02913	FAD linked oxidases, C-terminal domain
A388_00394	PF03992	Antibiotic biosynthesis monooxygenase
A388_00395	PF02525	Flavodoxin-like fold
A388_00397	PF07690	Major Facilitator Superfamily
A388_00398	PF12805	A388_00398
A388_00398	PF13515	A388_00398
A388_00399	PF00080	Copper/zinc superoxide dismutase (SODC)
A388_00400	PF01594	A388_00400
A388_00401	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A388_00402	PF10107	A388_00402
A388_00405	PF08241	Methyltransferase domain
A388_00407	PF00324	Amino acid permease
A388_00408	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A388_00408	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
A388_00409	PF00202	Aminotransferase class-III
A388_00410	PF04958	Arginine N-succinyltransferase beta subunit
A388_00411	PF00171	Aldehyde dehydrogenase family
A388_00412	PF04996	Succinylarginine dihydrolase
A388_00413	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
A388_00416	PF00082	Subtilase family
A388_00419	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_00419	PF03466	LysR substrate binding domain
A388_00420	PF00892	EamA-like transporter family
A388_00421	PF03795	YCII-related domain
A388_00422	PF03235	A388_00422
A388_00424	PF02092	A388_00424
A388_00424	PF05746	DALR anticodon binding domain
A388_00425	PF02091	Glycyl-tRNA synthetase alpha subunit
A388_00426	PF07690	Major Facilitator Superfamily
A388_00428	PF13566	A388_00428
A388_00429	PF00571	CBS domain
A388_00429	PF04982	A388_00429
A388_00430	PF04024	A388_00430
A388_00432	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00432	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00432	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00432	PF12418	A388_00432
A388_00432	PF12806	A388_00432
A388_00434	PF01488	Shikimate / quinate 5-dehydrogenase
A388_00434	PF08501	Shikimate dehydrogenase substrate binding domain
A388_00435	PF01218	Coproporphyrinogen III oxidase
A388_00436	PF00925	GTP cyclohydrolase II
A388_00437	PF02779	Transketolase, pyrimidine binding domain
A388_00437	PF02780	Transketolase, C-terminal domain
A388_00437	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
A388_00438	PF00459	Inositol monophosphatase family
A388_00439	PF00270	DEAD/DEAH box helicase
A388_00439	PF00271	Helicase conserved C-terminal domain
A388_00441	PF00005	ABC transporter
A388_00442	PF02405	A388_00442
A388_00443	PF02470	A388_00443
A388_00444	PF05494	Toluene tolerance, Ttg2
A388_00445	PF13466	STAS domain
A388_00446	PF01544	CorA-like Mg2+ transporter protein
A388_00447	PF03641	Possible lysine decarboxylase
A388_00448	PF00293	NUDIX domain
A388_00449	PF00156	Phosphoribosyl transferase domain
A388_00450	PF00270	DEAD/DEAH box helicase
A388_00450	PF00271	Helicase conserved C-terminal domain
A388_00450	PF17191	A388_00450
A388_00451	PF13460	NADH(P)-binding
A388_00452	PF03480	Bacterial extracellular solute-binding protein, family 7
A388_00453	PF01553	Acyltransferase
A388_00454	PF13622	Thioesterase-like superfamily
A388_00455	PF00375	Sodium:dicarboxylate symporter family
A388_00456	PF10118	A388_00456
A388_00457	PF01926	50S ribosome-binding GTPase
A388_00458	PF02082	Transcriptional regulator
A388_00459	PF00042	Globin
A388_00460	PF05872	A388_00460
A388_00461	PF01053	Cys/Met metabolism PLP-dependent enzyme
A388_00462	PF00117	Glutamine amidotransferase class-I
A388_00463	PF00338	Ribosomal protein S10p/S20e
A388_00464	PF00297	Ribosomal protein L3
A388_00465	PF00573	Ribosomal protein L4/L1 family
A388_00466	PF00276	Ribosomal protein L23
A388_00467	PF00181	Ribosomal Proteins L2, RNA binding domain
A388_00467	PF03947	Ribosomal Proteins L2, C-terminal domain
A388_00468	PF00203	Ribosomal protein S19
A388_00469	PF00237	Ribosomal protein L22p/L17e
A388_00470	PF00189	Ribosomal protein S3, C-terminal domain
A388_00470	PF07650	KH domain
A388_00471	PF00252	Ribosomal protein L16p/L10e
A388_00472	PF00831	Ribosomal L29 protein
A388_00473	PF00366	Ribosomal protein S17
A388_00474	PF00238	Ribosomal protein L14p/L23e
A388_00475	PF00467	KOW motif
A388_00475	PF17136	A388_00475
A388_00476	PF00281	Ribosomal protein L5
A388_00476	PF00673	ribosomal L5P family C-terminus
A388_00477	PF00253	Ribosomal protein S14p/S29e
A388_00478	PF00410	Ribosomal protein S8
A388_00479	PF00347	Ribosomal protein L6
A388_00480	PF00861	Ribosomal L18p/L5e family
A388_00481	PF00333	Ribosomal protein S5, N-terminal domain
A388_00481	PF03719	Ribosomal protein S5, C-terminal domain
A388_00482	PF00327	Ribosomal protein L30p/L7e
A388_00483	PF00828	Ribosomal protein L18e/L15
A388_00484	PF00344	SecY translocase
A388_00485	PF00444	Ribosomal protein L36
A388_00486	PF00416	Ribosomal protein S13/S18
A388_00487	PF00411	Ribosomal protein S11
A388_00488	PF00163	Ribosomal protein S4/S9 N-terminal domain
A388_00488	PF01479	S4 domain
A388_00489	PF01000	RNA polymerase Rpb3/RpoA insert domain
A388_00489	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
A388_00489	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
A388_00490	PF01196	Ribosomal protein L17
A388_00491	PF00743	Flavin-binding monooxygenase-like
A388_00491	PF13450	NAD(P)-binding Rossmann-like domain
A388_00492	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00492	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00492	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00493	PF03937	Flavinator of succinate dehydrogenase
A388_00497	PF01694	Rhomboid family
A388_00498	PF06808	A388_00498
A388_00500	PF09526	A388_00500
A388_00501	PF01432	Peptidase family M3
A388_00502	PF00575	S1 RNA binding domain
A388_00502	PF00773	RNB domain
A388_00502	PF08206	Ribonuclease B OB domain
A388_00506	PF12710	haloacid dehalogenase-like hydrolase
A388_00507	PF00665	Integrase core domain
A388_00507	PF13936	Helix-turn-helix domain
A388_00510	PF00881	Nitroreductase family
A388_00512	PF01557	Fumarylacetoacetate (FAA) hydrolase family
A388_00513	PF02311	AraC-like ligand binding domain
A388_00513	PF12833	Helix-turn-helix domain
A388_00514	PF00892	EamA-like transporter family
A388_00515	PF03631	A388_00515
A388_00516	PF03358	NADPH-dependent FMN reductase
A388_00518	PF11306	Protein of unknown function (DUF3108)
A388_00520	PF03544	Gram-negative bacterial TonB protein C-terminal
A388_00521	PF02130	Uncharacterized protein family UPF0054
A388_00522	PF02562	PhoH-like protein
A388_00523	PF00919	Uncharacterized protein family UPF0004
A388_00523	PF01938	TRAM domain
A388_00523	PF04055	Radical SAM superfamily
A388_00524	PF01464	Transglycosylase SLT domain
A388_00525	PF00445	Ribonuclease T2 family
A388_00526	PF00056	lactate/malate dehydrogenase, NAD binding domain
A388_00526	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
A388_00527	PF10982	Protein of unknown function (DUF2789)
A388_00529	PF13640	2OG-Fe(II) oxygenase superfamily
A388_00530	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
A388_00531	PF01066	CDP-alcohol phosphatidyltransferase
A388_00535	PF04828	Glutathione-dependent formaldehyde-activating enzyme
A388_00536	PF14066	A388_00536
A388_00537	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00537	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00537	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00538	PF00440	Bacterial regulatory proteins, tetR family
A388_00539	PF07287	A388_00539
A388_00540	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_00541	PF01039	Carboxyl transferase domain
A388_00542	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00542	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00542	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00543	PF00378	Enoyl-CoA hydratase/isomerase family
A388_00544	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
A388_00544	PF00364	Biotin-requiring enzyme
A388_00544	PF02785	Biotin carboxylase C-terminal domain
A388_00544	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A388_00546	PF04386	Stringent starvation protein B
A388_00547	PF02798	Glutathione S-transferase, N-terminal domain
A388_00548	PF00380	Ribosomal protein S9/S16
A388_00549	PF00572	Ribosomal protein L13
A388_00550	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
A388_00551	PF00398	Ribosomal RNA adenine dimethylase
A388_00552	PF00149	Calcineurin-like phosphoesterase
A388_00553	PF09917	Uncharacterized protein conserved in bacteria (DUF2147)
A388_00554	PF04172	A388_00554
A388_00556	PF01926	50S ribosome-binding GTPase
A388_00556	PF13167	A388_00556
A388_00556	PF16360	A388_00556
A388_00557	PF01553	Acyltransferase
A388_00558	PF13091	PLD-like domain
A388_00559	PF00149	Calcineurin-like phosphoesterase
A388_00560	PF00691	OmpA family
A388_00561	PF00990	GGDEF domain
A388_00561	PF17152	A388_00561
A388_00562	PF13689	A388_00562
A388_00565	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A388_00565	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_00567	PF04273	Putative phosphatase (DUF442)
A388_00568	PF12146	Putative lysophospholipase
A388_00569	PF00085	Thioredoxin
A388_00570	PF03061	Thioesterase superfamily
A388_00571	PF14539	Domain of unknown function (DUF4442)
A388_00572	PF04461	Protein of unknown function (DUF520)
A388_00573	PF00581	Rhodanese-like domain
A388_00574	PF01266	FAD dependent oxidoreductase
A388_00574	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
A388_00576	PF03795	YCII-related domain
A388_00577	PF04279	A388_00577
A388_00578	PF02811	PHP domain
A388_00579	PF01062	A388_00579
A388_00580	PF04002	RadC-like JAB domain
A388_00581	PF02441	Flavoprotein
A388_00581	PF04127	DNA / pantothenate metabolism flavoprotein
A388_00582	PF02355	Protein export membrane protein
A388_00582	PF07549	SecD/SecF GG Motif
A388_00583	PF02355	Protein export membrane protein
A388_00583	PF07549	SecD/SecF GG Motif
A388_00583	PF13721	SecD export protein N-terminal TM region
A388_00584	PF02699	Preprotein translocase subunit
A388_00585	PF01702	Queuine tRNA-ribosyltransferase
A388_00586	PF04011	LemA family
A388_00588	PF02547	Queuosine biosynthesis protein
A388_00590	PF00589	Phage integrase family
A388_00593	PF00929	Exonuclease
A388_00594	PF00436	Single-strand binding protein family
A388_00597	PF10800	A388_00597
A388_00599	PF13155	Toprim-like
A388_00605	PF01609	Transposase DDE domain
A388_00606	PF01609	Transposase DDE domain
A388_00609	PF01258	Prokaryotic dksA/traR C4-type zinc finger
A388_00610	PF04606	A388_00610
A388_00611	PF05954	Phage late control gene D protein (GPD)
A388_00612	PF06995	A388_00612
A388_00613	PF10145	A388_00613
A388_00614	PF10109	A388_00614
A388_00615	PF04985	A388_00615
A388_00616	PF04984	Phage tail sheath protein
A388_00616	PF17482	A388_00616
A388_00617	PF12571	A388_00617
A388_00618	PF09684	A388_00618
A388_00619	PF04865	A388_00619
A388_00620	PF04965	Gene 25-like lysozyme
A388_00621	PF04717	Phage-related baseplate assembly protein
A388_00622	PF05069	A388_00622
A388_00623	PF06891	A388_00623
A388_00624	PF01471	Putative peptidoglycan binding domain
A388_00624	PF11860	A388_00624
A388_00625	PF05449	A388_00625
A388_00626	PF16931	A388_00626
A388_00627	PF05489	Phage Tail Protein X
A388_00628	PF05926	A388_00628
A388_00629	PF05944	A388_00629
A388_00630	PF05125	A388_00630
A388_00631	PF05929	A388_00631
A388_00632	PF03237	Terminase-like family
A388_00632	PF06056	Putative ATPase subunit of terminase (gpP-like)
A388_00632	PF17289	A388_00632
A388_00633	PF04860	Phage portal protein
A388_00634	PF00512	His Kinase A (phospho-acceptor) domain
A388_00634	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_00635	PF03710	Glutamate-ammonia ligase adenylyltransferase
A388_00635	PF08335	GlnD PII-uridylyltransferase
A388_00636	PF01063	Aminotransferase class IV
A388_00637	PF06258	A388_00637
A388_00638	PF13524	Glycosyl transferases group 1
A388_00639	PF01522	Polysaccharide deacetylase
A388_00640	PF00535	Glycosyl transferase family 2
A388_00641	PF00534	Glycosyl transferases group 1
A388_00641	PF13439	Glycosyltransferase Family 4
A388_00643	PF01755	A388_00643
A388_00646	PF11380	A388_00646
A388_00646	PF17102	A388_00646
A388_00647	PF00152	tRNA synthetases class II (D, K and N)
A388_00647	PF01336	OB-fold nucleic acid binding domain
A388_00647	PF02938	GAD domain
A388_00648	PF13803	A388_00648
A388_00649	PF00593	TonB dependent receptor
A388_00649	PF07715	TonB-dependent Receptor Plug Domain
A388_00650	PF13091	PLD-like domain
A388_00652	PF11776	Domain of unknown function (DUF3315)
A388_00653	PF06146	A388_00653
A388_00654	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00654	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00654	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00654	PF12418	A388_00654
A388_00654	PF12806	A388_00654
A388_00655	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_00655	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_00655	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_00655	PF12418	A388_00655
A388_00655	PF12806	A388_00655
A388_00657	PF00512	His Kinase A (phospho-acceptor) domain
A388_00657	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_00658	PF00072	Response regulator receiver domain
A388_00658	PF00486	Transcriptional regulatory protein, C terminal
A388_00659	PF02696	A388_00659
A388_00660	PF00487	A388_00660
A388_00661	PF03724	META domain
A388_00662	PF03009	Glycerophosphoryl diester phosphodiesterase family
A388_00663	PF01923	Cobalamin adenosyltransferase
A388_00664	PF00593	TonB dependent receptor
A388_00664	PF07715	TonB-dependent Receptor Plug Domain
A388_00665	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
A388_00666	PF00291	Pyridoxal-phosphate dependent enzyme
A388_00667	PF07566	Domain of Unknown Function (DUF1543)
A388_00668	PF10974	A388_00668
A388_00669	PF10118	A388_00669
A388_00670	PF12625	A388_00670
A388_00670	PF12833	Helix-turn-helix domain
A388_00671	PF00290	Tryptophan synthase alpha chain
A388_00672	PF01039	Carboxyl transferase domain
A388_00673	PF02875	Mur ligase family, glutamate ligase domain
A388_00673	PF08245	Mur ligase middle domain
A388_00674	PF05036	Sporulation related domain
A388_00675	PF00782	Dual specificity phosphatase, catalytic domain
A388_00676	PF00753	Metallo-beta-lactamase superfamily
A388_00677	PF00578	AhpC/TSA family
A388_00677	PF10417	C-terminal domain of 1-Cys peroxiredoxin
A388_00678	PF01043	SecA preprotein cross-linking domain
A388_00678	PF02810	SEC-C motif
A388_00678	PF07516	SecA Wing and Scaffold domain
A388_00678	PF07517	SecA DEAD-like domain
A388_00680	PF00083	Sugar (and other) transporter
A388_00681	PF03006	A388_00681
A388_00682	PF13679	A388_00682
A388_00683	PF13673	Acetyltransferase (GNAT) domain
A388_00684	PF01734	Patatin-like phospholipase
A388_00686	PF00378	Enoyl-CoA hydratase/isomerase family
A388_00686	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
A388_00686	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
A388_00687	PF00108	Thiolase, N-terminal domain
A388_00687	PF02803	Thiolase, C-terminal domain
A388_00688	PF12625	A388_00688
A388_00688	PF12833	Helix-turn-helix domain
A388_00689	PF02515	CoA-transferase family III
A388_00690	PF04966	Carbohydrate-selective porin, OprB family
A388_00691	PF01011	PQQ enzyme repeat
A388_00692	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
A388_00692	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
A388_00693	PF06073	A388_00693
A388_00694	PF00893	Small Multidrug Resistance protein
A388_00695	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
A388_00696	PF00108	Thiolase, N-terminal domain
A388_00696	PF02803	Thiolase, C-terminal domain
A388_00697	PF12019	Type II transport protein GspH
A388_00698	PF00691	OmpA family
A388_00698	PF13505	Outer membrane protein beta-barrel domain
A388_00700	PF01139	tRNA-splicing ligase RtcB
A388_00701	PF00324	Amino acid permease
A388_00702	PF05175	Methyltransferase small domain
A388_00702	PF08468	Methyltransferase small domain N-terminal
A388_00703	PF00860	Permease family
A388_00704	PF00009	Elongation factor Tu GTP binding domain
A388_00704	PF00679	Elongation factor G C-terminus
A388_00704	PF03144	Elongation factor Tu domain 2
A388_00705	PF01741	Large-conductance mechanosensitive channel, MscL
A388_00706	PF06094	AIG2-like family
A388_00707	PF00639	PPIC-type PPIASE domain
A388_00708	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
A388_00708	PF06827	Zinc finger found in FPG and IleRS
A388_00708	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
A388_00709	PF02245	Methylpurine-DNA glycosylase (MPG)
A388_00710	PF00593	TonB dependent receptor
A388_00710	PF07715	TonB-dependent Receptor Plug Domain
A388_00711	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_00712	PF03547	A388_00712
A388_00713	PF08238	Sel1 repeat
A388_00714	PF10411	Disulfide bond isomerase protein N-terminus
A388_00714	PF13098	Thioredoxin-like domain
A388_00715	PF01571	Aminomethyltransferase folate-binding domain
A388_00716	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
A388_00717	PF04343	A388_00717
A388_00718	PF03831	PhnA protein
A388_00718	PF08274	PhnA Zinc-Ribbon
A388_00719	PF07411	Domain of unknown function (DUF1508)
A388_00720	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A388_00720	PF03129	Anticodon binding domain
A388_00720	PF04073	Aminoacyl-tRNA editing domain
A388_00721	PF00873	AcrB/AcrD/AcrF family
A388_00722	PF13437	HlyD family secretion protein
A388_00722	PF13533	Biotin-lipoyl like
A388_00724	PF00072	Response regulator receiver domain
A388_00725	PF00072	Response regulator receiver domain
A388_00726	PF01584	CheW-like domain
A388_00727	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
A388_00728	PF00072	Response regulator receiver domain
A388_00728	PF01584	CheW-like domain
A388_00728	PF01627	Hpt domain
A388_00728	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_00730	PF04055	Radical SAM superfamily
A388_00731	PF12146	Putative lysophospholipase
A388_00732	PF01546	Peptidase family M20/M25/M40
A388_00732	PF07687	Peptidase dimerisation domain
A388_00733	PF08085	A388_00733
A388_00734	PF08907	A388_00734
A388_00735	PF04304	A388_00735
A388_00736	PF03734	L,D-transpeptidase catalytic domain
A388_00743	PF02698	DUF218 domain
A388_00744	PF00175	Oxidoreductase NAD-binding domain
A388_00744	PF00258	Flavodoxin
A388_00744	PF03929	A388_00744
A388_00745	PF14317	A388_00745
A388_00746	PF12805	A388_00746
A388_00746	PF13515	A388_00746
A388_00747	PF07690	Major Facilitator Superfamily
A388_00748	PF00881	Nitroreductase family
A388_00750	PF01235	A388_00750
A388_00751	PF01734	Patatin-like phospholipase
A388_00752	PF00291	Pyridoxal-phosphate dependent enzyme
A388_00753	PF05992	A388_00753
A388_00754	PF16142	A388_00754
A388_00755	PF06674	A388_00755
A388_00757	PF01965	DJ-1/PfpI family
A388_00758	PF02637	GatB domain
A388_00758	PF02934	GatB/GatE catalytic domain
A388_00759	PF01425	Amidase
A388_00760	PF02686	Glu-tRNAGln amidotransferase C subunit
A388_00761	PF06723	MreB/Mbl protein
A388_00762	PF04085	rod shape-determining protein MreC
A388_00763	PF04093	A388_00763
A388_00764	PF02545	Maf-like protein
A388_00765	PF00575	S1 RNA binding domain
A388_00765	PF10150	Ribonuclease E/G family
A388_00767	PF03007	A388_00767
A388_00767	PF06974	A388_00767
A388_00768	PF01507	Phosphoadenosine phosphosulfate reductase family
A388_00769	PF12710	haloacid dehalogenase-like hydrolase
A388_00770	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
A388_00771	PF02525	Flavodoxin-like fold
A388_00772	PF12625	A388_00772
A388_00772	PF12833	Helix-turn-helix domain
A388_00773	PF00487	A388_00773
A388_00774	PF08223	PaaX-like protein C-terminal domain
A388_00775	PF02673	A388_00775
A388_00776	PF06719	A388_00776
A388_00776	PF12833	Helix-turn-helix domain
A388_00777	PF00107	Zinc-binding dehydrogenase
A388_00777	PF08240	Alcohol dehydrogenase GroES-like domain
A388_00778	PF01965	DJ-1/PfpI family
A388_00779	PF05930	Prophage CP4-57 regulatory protein (AlpA)
A388_00789	PF02384	N-6 DNA Methylase
A388_00791	PF00717	Peptidase S24-like
A388_00791	PF01381	Helix-turn-helix
A388_00792	PF14549	DNA-binding transcriptional regulator Cro
A388_00796	PF00772	DnaB-like helicase N terminal domain
A388_00796	PF03796	DnaB-like helicase C terminal domain
A388_00814	PF06147	A388_00814
A388_00818	PF10045	A388_00818
A388_00819	PF17289	A388_00819
A388_00820	PF13264	A388_00820
A388_00821	PF04233	A388_00821
A388_00829	PF13554	Bacteriophage related domain of unknown function
A388_00830	PF09669	A388_00830
A388_00840	PF01464	Transglycosylase SLT domain
A388_00840	PF06120	A388_00840
A388_00842	PF08875	A388_00842
A388_00847	PF00959	Phage lysozyme
A388_00852	PF00589	Phage integrase family
A388_00852	PF13356	Domain of unknown function (DUF4102)
A388_00854	PF00324	Amino acid permease
A388_00855	PF04303	PrpF protein
A388_00856	PF00348	Polyprenyl synthetase
A388_00857	PF04237	YjbR
A388_00858	PF01145	SPFH domain / Band 7 family
A388_00859	PF01957	NfeD-like C-terminal, partner-binding
A388_00860	PF01734	Patatin-like phospholipase
A388_00861	PF01553	Acyltransferase
A388_00862	PF13000	A388_00862
A388_00863	PF02530	A388_00863
A388_00864	PF00884	Sulfatase
A388_00864	PF08019	A388_00864
A388_00865	PF00072	Response regulator receiver domain
A388_00865	PF00486	Transcriptional regulatory protein, C terminal
A388_00866	PF00512	His Kinase A (phospho-acceptor) domain
A388_00866	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_00867	PF01569	PAP2 superfamily
A388_00868	PF00909	Ammonium Transporter Family
A388_00869	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_00869	PF03466	LysR substrate binding domain
A388_00870	PF03547	A388_00870
A388_00873	PF00133	tRNA synthetases class I (I, L, M and V)
A388_00873	PF08264	Anticodon-binding domain of tRNA
A388_00873	PF10458	Valyl tRNA synthetase tRNA binding arm
A388_00875	PF00106	short chain dehydrogenase
A388_00876	PF13577	SnoaL-like domain
A388_00877	PF01906	Putative heavy-metal-binding
A388_00878	PF01906	Putative heavy-metal-binding
A388_00879	PF02321	Outer membrane efflux protein
A388_00880	PF00665	Integrase core domain
A388_00880	PF13276	A388_00880
A388_00882	PF00873	AcrB/AcrD/AcrF family
A388_00883	PF00529	HlyD family secretion protein
A388_00883	PF16576	A388_00883
A388_00884	PF01569	PAP2 superfamily
A388_00885	PF10136	A388_00885
A388_00886	PF00348	Polyprenyl synthetase
A388_00887	PF00829	Ribosomal prokaryotic L21 protein
A388_00888	PF01016	Ribosomal L27 protein
A388_00889	PF03548	Outer membrane lipoprotein carrier protein LolA
A388_00890	PF11738	Protein of unknown function (DUF3298)
A388_00891	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A388_00891	PF02403	Seryl-tRNA synthetase N-terminal domain
A388_00892	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
A388_00892	PF10414	Sirohaem synthase dimerisation region
A388_00892	PF13241	Putative NAD(P)-binding
A388_00893	PF00588	SpoU rRNA Methylase family
A388_00894	PF01638	HxlR-like helix-turn-helix
A388_00895	PF12724	Flavodoxin domain
A388_00896	PF00324	Amino acid permease
A388_00897	PF00465	Iron-containing alcohol dehydrogenase
A388_00899	PF03099	Biotin/lipoate A/B protein ligase family
A388_00900	PF04359	Protein of unknown function (DUF493)
A388_00901	PF00140	Sigma-70 factor, region 1
A388_00901	PF03979	Sigma-70 factor, region 1
A388_00901	PF04539	Sigma-70 region 3
A388_00901	PF04542	Sigma-70 region 2
A388_00901	PF04545	Sigma-70, region 4
A388_00901	PF04546	Sigma-70, non-essential region
A388_00903	PF03695	Uncharacterised protein family (UPF0149)
A388_00904	PF00581	Rhodanese-like domain
A388_00905	PF06945	A388_00905
A388_00906	PF00285	Citrate synthase
A388_00907	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
A388_00908	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
A388_00909	PF00890	FAD binding domain
A388_00909	PF02910	Fumarate reductase flavoprotein C-term
A388_00910	PF13085	2Fe-2S iron-sulfur cluster binding domain
A388_00910	PF13534	4Fe-4S dicluster domain
A388_00911	PF00676	Dehydrogenase E1 component
A388_00911	PF02779	Transketolase, pyrimidine binding domain
A388_00911	PF16078	A388_00911
A388_00911	PF16870	A388_00911
A388_00912	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A388_00912	PF00364	Biotin-requiring enzyme
A388_00912	PF02817	e3 binding domain
A388_00913	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A388_00913	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_00914	PF00549	CoA-ligase
A388_00914	PF08442	ATP-grasp domain
A388_00915	PF00549	CoA-ligase
A388_00915	PF02629	CoA binding domain
A388_00918	PF00579	tRNA synthetases class I (W and Y)
A388_00919	PF05661	A388_00919
A388_00920	PF04228	A388_00920
A388_00921	PF00999	Sodium/hydrogen exchanger family
A388_00922	PF13737	A388_00922
A388_00925	PF09587	Bacterial capsule synthesis protein PGA_cap
A388_00927	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
A388_00928	PF00582	Universal stress protein family
A388_00929	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_00930	PF01272	Transcription elongation factor, GreA/GreB, C-term
A388_00930	PF03449	Transcription elongation factor, N-terminal
A388_00931	PF02142	MGS-like domain
A388_00931	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A388_00931	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A388_00932	PF00117	Glutamine amidotransferase class-I
A388_00932	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
A388_00935	PF01985	CRS1 / YhbY (CRM) domain
A388_00936	PF01728	FtsJ-like methyltransferase
A388_00937	PF00004	ATPase family associated with various cellular activities (AAA)
A388_00937	PF01434	Peptidase family M41
A388_00937	PF06480	FtsH Extracellular
A388_00938	PF00809	Pterin binding enzyme
A388_00942	PF09423	PhoD-like phosphatase
A388_00942	PF16655	A388_00942
A388_00945	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
A388_00945	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
A388_00946	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
A388_00948	PF00083	Sugar (and other) transporter
A388_00949	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
A388_00949	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
A388_00950	PF01266	FAD dependent oxidoreductase
A388_00950	PF16901	A388_00950
A388_00951	PF00821	Phosphoenolpyruvate carboxykinase
A388_00951	PF17297	A388_00951
A388_00952	PF00781	Diacylglycerol kinase catalytic domain
A388_00953	PF00149	Calcineurin-like phosphoesterase
A388_00954	PF12245	Bacterial Ig-like domain (group 3)
A388_00955	PF00166	Chaperonin 10 Kd subunit
A388_00956	PF00118	TCP-1/cpn60 chaperonin family
A388_00957	PF01219	Prokaryotic diacylglycerol kinase
A388_00958	PF00753	Metallo-beta-lactamase superfamily
A388_00959	PF03009	Glycerophosphoryl diester phosphodiesterase family
A388_00960	PF00873	AcrB/AcrD/AcrF family
A388_00961	PF13430	A388_00961
A388_00962	PF01435	Peptidase family M48
A388_00963	PF01464	Transglycosylase SLT domain
A388_00964	PF01171	PP-loop family
A388_00965	PF02036	SCP-2 sterol transfer family
A388_00966	PF00497	Bacterial extracellular solute-binding proteins, family 3
A388_00966	PF01464	Transglycosylase SLT domain
A388_00967	PF01272	Transcription elongation factor, GreA/GreB, C-term
A388_00967	PF03449	Transcription elongation factor, N-terminal
A388_00969	PF14534	Domain of unknown function (DUF4440)
A388_00970	PF00501	AMP-binding enzyme
A388_00970	PF00550	Phosphopantetheine attachment site
A388_00970	PF13193	AMP-binding enzyme C-terminal domain
A388_00973	PF00665	Integrase core domain
A388_00974	PF01527	Transposase
A388_00978	PF00440	Bacterial regulatory proteins, tetR family
A388_00979	PF00881	Nitroreductase family
A388_00980	PF00106	short chain dehydrogenase
A388_00981	PF00440	Bacterial regulatory proteins, tetR family
A388_00982	PF02595	Glycerate kinase family
A388_00983	PF00384	Molybdopterin oxidoreductase
A388_00983	PF01568	Molydopterin dinucleotide binding domain
A388_00984	PF02634	FdhD/NarQ family
A388_00985	PF06803	A388_00985
A388_00986	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
A388_00986	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
A388_00986	PF11890	Domain of unknown function (DUF3410)
A388_00987	PF00152	tRNA synthetases class II (D, K and N)
A388_00988	PF04280	Tim44-like domain
A388_00989	PF06745	KaiC
A388_00989	PF13541	Subunit ChlI of Mg-chelatase
A388_00990	PF00324	Amino acid permease
A388_00992	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
A388_00992	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
A388_00993	PF01678	Diaminopimelate epimerase
A388_00994	PF00561	alpha/beta hydrolase fold
A388_00995	PF01810	A388_00995
A388_00996	PF00589	Phage integrase family
A388_00996	PF02899	Phage integrase, N-terminal SAM-like domain
A388_00997	PF01012	Electron transfer flavoprotein domain
A388_00998	PF00766	Electron transfer flavoprotein FAD-binding domain
A388_00998	PF01012	Electron transfer flavoprotein domain
A388_00999	PF00521	DNA gyrase/topoisomerase IV, subunit A
A388_00999	PF03989	DNA gyrase C-terminal domain, beta-propeller
A388_01000	PF13231	A388_01000
A388_01001	PF04138	A388_01001
A388_01002	PF00535	Glycosyl transferase family 2
A388_01003	PF04794	YdjC-like protein
A388_01004	PF12698	ABC-2 family transporter protein
A388_01005	PF12698	ABC-2 family transporter protein
A388_01006	PF16576	A388_01006
A388_01007	PF02321	Outer membrane efflux protein
A388_01008	PF00266	Aminotransferase class-V
A388_01011	PF02639	A388_01011
A388_01012	PF00892	EamA-like transporter family
A388_01013	PF02687	A388_01013
A388_01013	PF12704	MacB-like periplasmic core domain
A388_01014	PF00005	ABC transporter
A388_01015	PF00753	Metallo-beta-lactamase superfamily
A388_01015	PF03772	A388_01015
A388_01015	PF13567	A388_01015
A388_01016	PF03279	A388_01016
A388_01017	PF01343	Peptidase family S49
A388_01018	PF12697	Alpha/beta hydrolase family
A388_01019	PF00551	Formyl transferase
A388_01020	PF00586	AIR synthase related protein, N-terminal domain
A388_01020	PF02769	AIR synthase related protein, C-terminal domain
A388_01021	PF01594	A388_01021
A388_01022	PF00308	Bacterial dnaA  protein
A388_01025	PF11304	A388_01025
A388_01027	PF04542	Sigma-70 region 2
A388_01027	PF08281	Sigma-70, region 4
A388_01028	PF00588	SpoU rRNA Methylase family
A388_01029	PF00316	Fructose-1-6-bisphosphatase
A388_01031	PF00691	OmpA family
A388_01032	PF04052	TolB amino-terminal domain
A388_01032	PF07676	WD40-like Beta Propeller Repeat
A388_01033	PF13103	TonB C terminal
A388_01034	PF02472	Biopolymer transport protein ExbD/TolR
A388_01035	PF01618	A388_01035
A388_01036	PF03061	Thioesterase superfamily
A388_01037	PF01546	Peptidase family M20/M25/M40
A388_01037	PF07687	Peptidase dimerisation domain
A388_01038	PF05491	Holliday junction DNA helicase ruvB C-terminus
A388_01038	PF05496	Holliday junction DNA helicase ruvB N-terminus
A388_01039	PF01330	RuvA N terminal domain
A388_01039	PF07499	RuvA, C-terminal domain
A388_01039	PF14520	Helix-hairpin-helix domain
A388_01040	PF01966	HD domain
A388_01041	PF02769	AIR synthase related protein, C-terminal domain
A388_01041	PF13507	CobB/CobQ-like glutamine amidotransferase domain
A388_01042	PF07690	Major Facilitator Superfamily
A388_01044	PF00378	Enoyl-CoA hydratase/isomerase family
A388_01045	PF01467	Cytidylyltransferase
A388_01046	PF00188	Cysteine-rich secretory protein family
A388_01047	PF00578	AhpC/TSA family
A388_01048	PF01902	ATP-binding region
A388_01050	PF06508	Queuosine biosynthesis protein QueC
A388_01051	PF04055	Radical SAM superfamily
A388_01051	PF13394	4Fe-4S single cluster domain
A388_01052	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_01052	PF14602	Hexapeptide repeat of succinyl-transferase
A388_01052	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
A388_01054	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01054	PF03466	LysR substrate binding domain
A388_01055	PF00005	ABC transporter
A388_01055	PF12857	A388_01055
A388_01056	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01057	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01058	PF06821	Serine hydrolase
A388_01059	PF13531	Bacterial extracellular solute-binding protein
A388_01060	PF01063	Aminotransferase class IV
A388_01061	PF02618	YceG-like family
A388_01062	PF02223	Thymidylate kinase
A388_01063	PF03061	Thioesterase superfamily
A388_01064	PF00890	FAD binding domain
A388_01064	PF02910	Fumarate reductase flavoprotein C-term
A388_01065	PF13180	PDZ domain
A388_01065	PF13365	Trypsin-like peptidase domain
A388_01066	PF13279	Thioesterase-like superfamily
A388_01067	PF00009	Elongation factor Tu GTP binding domain
A388_01067	PF00679	Elongation factor G C-terminus
A388_01067	PF03144	Elongation factor Tu domain 2
A388_01067	PF06421	GTP-binding protein LepA C-terminus
A388_01068	PF00717	Peptidase S24-like
A388_01068	PF10502	Signal peptidase, peptidase S26
A388_01069	PF16137	A388_01069
A388_01070	PF00035	Double-stranded RNA binding motif
A388_01070	PF14622	Ribonuclease-III-like
A388_01071	PF01926	50S ribosome-binding GTPase
A388_01071	PF07650	KH domain
A388_01073	PF02565	Recombination protein O C terminal
A388_01073	PF11967	Recombination protein O N terminal
A388_01074	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
A388_01075	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
A388_01076	PF00106	short chain dehydrogenase
A388_01079	PF03061	Thioesterase superfamily
A388_01080	PF04828	Glutathione-dependent formaldehyde-activating enzyme
A388_01081	PF00155	Aminotransferase class I and II
A388_01083	PF00990	GGDEF domain
A388_01083	PF13188	PAS domain
A388_01085	PF00271	Helicase conserved C-terminal domain
A388_01085	PF02151	UvrB/uvrC motif
A388_01085	PF04851	Type III restriction enzyme, res subunit
A388_01085	PF12344	Ultra-violet resistance protein B
A388_01086	PF08212	Lipocalin-like domain
A388_01087	PF00892	EamA-like transporter family
A388_01088	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A388_01088	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
A388_01091	PF01018	GTP1/OBG
A388_01091	PF01926	50S ribosome-binding GTPase
A388_01092	PF00696	Amino acid kinase family
A388_01092	PF01472	PUA domain
A388_01093	PF12710	haloacid dehalogenase-like hydrolase
A388_01094	PF07759	A388_01094
A388_01095	PF01207	Dihydrouridine synthase (Dus)
A388_01096	PF03060	Nitronate monooxygenase
A388_01097	PF01988	A388_01097
A388_01099	PF02350	UDP-N-acetylglucosamine 2-epimerase
A388_01102	PF13641	Glycosyltransferase like family 2
A388_01105	PF00875	DNA photolyase
A388_01105	PF03441	FAD binding domain of DNA photolyase
A388_01106	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A388_01107	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01108	PF00768	D-alanyl-D-alanine carboxypeptidase
A388_01109	PF05299	M61 glycyl aminopeptidase
A388_01110	PF03971	Monomeric isocitrate dehydrogenase
A388_01111	PF00849	RNA pseudouridylate synthase
A388_01112	PF00180	Isocitrate/isopropylmalate dehydrogenase
A388_01116	PF06779	A388_01116
A388_01117	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01117	PF03466	LysR substrate binding domain
A388_01118	PF00375	Sodium:dicarboxylate symporter family
A388_01119	PF02567	Phenazine biosynthesis-like protein
A388_01120	PF00675	Insulinase (Peptidase family M16)
A388_01120	PF05193	Peptidase M16 inactive domain
A388_01121	PF11342	Protein of unknown function (DUF3144)
A388_01123	PF01928	CYTH domain
A388_01123	PF05235	CHAD domain
A388_01124	PF06127	A388_01124
A388_01125	PF01867	CRISPR associated protein Cas1
A388_01127	PF09611	A388_01127
A388_01128	PF09614	A388_01128
A388_01129	PF09615	A388_01129
A388_01130	PF09618	CRISPR-associated protein (Cas_Csy4)
A388_01131	PF02581	Thiamine monophosphate synthase/TENI
A388_01132	PF00202	Aminotransferase class-III
A388_01134	PF00849	RNA pseudouridylate synthase
A388_01135	PF00176	SNF2 family N-terminal domain
A388_01135	PF00271	Helicase conserved C-terminal domain
A388_01135	PF12137	RNA polymerase recycling family C-terminal
A388_01136	PF01594	A388_01136
A388_01137	PF00440	Bacterial regulatory proteins, tetR family
A388_01138	PF00175	Oxidoreductase NAD-binding domain
A388_01138	PF00970	Oxidoreductase FAD-binding domain
A388_01139	PF00487	A388_01139
A388_01140	PF14539	Domain of unknown function (DUF4442)
A388_01141	PF00440	Bacterial regulatory proteins, tetR family
A388_01142	PF04402	Protein of unknown function (DUF541)
A388_01143	PF00202	Aminotransferase class-III
A388_01144	PF00282	Pyridoxal-dependent decarboxylase conserved domain
A388_01145	PF00171	Aldehyde dehydrogenase family
A388_01146	PF01037	AsnC family
A388_01146	PF13404	AsnC-type helix-turn-helix domain
A388_01147	PF00205	Thiamine pyrophosphate enzyme, central domain
A388_01147	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A388_01147	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
A388_01148	PF00324	Amino acid permease
A388_01149	PF12849	PBP superfamily domain
A388_01150	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01150	PF12501	A388_01150
A388_01151	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01151	PF11812	A388_01151
A388_01152	PF00005	ABC transporter
A388_01153	PF01343	Peptidase family S49
A388_01153	PF08496	A388_01153
A388_01155	PF09997	A388_01155
A388_01156	PF00206	Lyase
A388_01156	PF08328	Adenylosuccinate lyase C-terminal
A388_01157	PF04356	Protein of unknown function (DUF489)
A388_01158	PF03054	tRNA methyl transferase
A388_01159	PF00293	NUDIX domain
A388_01160	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_01161	PF00768	D-alanyl-D-alanine carboxypeptidase
A388_01161	PF07943	Penicillin-binding protein 5, C-terminal domain
A388_01164	PF01975	Survival protein SurE
A388_01165	PF01476	LysM domain
A388_01165	PF01551	Peptidase family M23
A388_01166	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01166	PF03466	LysR substrate binding domain
A388_01167	PF05362	Lon protease (S16) C-terminal proteolytic domain
A388_01167	PF13654	AAA domain
A388_01168	PF07690	Major Facilitator Superfamily
A388_01169	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
A388_01170	PF13593	SBF-like CPA transporter family (DUF4137)
A388_01171	PF01197	Ribosomal protein L31
A388_01172	PF00563	EAL domain
A388_01174	PF04055	Radical SAM superfamily
A388_01174	PF13394	4Fe-4S single cluster domain
A388_01175	PF01132	Elongation factor P (EF-P) OB domain
A388_01175	PF08207	Elongation factor P (EF-P) KOW-like domain
A388_01175	PF09285	Elongation factor P, C-terminal
A388_01176	PF02554	A388_01176
A388_01176	PF13722	A388_01176
A388_01177	PF04328	A388_01177
A388_01179	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01179	PF03466	LysR substrate binding domain
A388_01180	PF00557	Metallopeptidase family M24
A388_01180	PF01321	Creatinase/Prolidase N-terminal domain
A388_01181	PF02028	BCCT family transporter
A388_01182	PF02028	BCCT family transporter
A388_01183	PF00355	Rieske [2Fe-2S] domain
A388_01183	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
A388_01184	PF00171	Aldehyde dehydrogenase family
A388_01185	PF00301	Rubredoxin
A388_01185	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01186	PF01266	FAD dependent oxidoreductase
A388_01187	PF06249	Ethanolamine utilisation protein EutQ
A388_01189	PF01914	A388_01189
A388_01190	PF00892	EamA-like transporter family
A388_01191	PF00892	EamA-like transporter family
A388_01192	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
A388_01193	PF00440	Bacterial regulatory proteins, tetR family
A388_01196	PF13737	A388_01196
A388_01197	PF00440	Bacterial regulatory proteins, tetR family
A388_01198	PF02678	Pirin
A388_01199	PF00291	Pyridoxal-phosphate dependent enzyme
A388_01200	PF08348	A388_01200
A388_01200	PF13309	A388_01200
A388_01201	PF04954	Siderophore-interacting protein
A388_01201	PF08021	Siderophore-interacting FAD-binding domain
A388_01202	PF00501	AMP-binding enzyme
A388_01202	PF13193	AMP-binding enzyme C-terminal domain
A388_01203	PF00550	Phosphopantetheine attachment site
A388_01203	PF00668	Condensation domain
A388_01206	PF01032	FecCD transport family
A388_01207	PF01032	FecCD transport family
A388_01208	PF00005	ABC transporter
A388_01209	PF01497	Periplasmic binding protein
A388_01210	PF07715	TonB-dependent Receptor Plug Domain
A388_01211	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
A388_01212	PF00668	Condensation domain
A388_01213	PF00501	AMP-binding enzyme
A388_01213	PF13193	AMP-binding enzyme C-terminal domain
A388_01214	PF00550	Phosphopantetheine attachment site
A388_01214	PF00857	Isochorismatase family
A388_01215	PF00282	Pyridoxal-dependent decarboxylase conserved domain
A388_01217	PF00005	ABC transporter
A388_01217	PF00664	ABC transporter transmembrane region
A388_01218	PF00005	ABC transporter
A388_01218	PF00664	ABC transporter transmembrane region
A388_01219	PF00975	Thioesterase domain
A388_01220	PF01648	4'-phosphopantetheinyl transferase superfamily
A388_01221	PF00425	chorismate binding enzyme
A388_01222	PF01471	Putative peptidoglycan binding domain
A388_01222	PF03734	L,D-transpeptidase catalytic domain
A388_01223	PF01208	Uroporphyrinogen decarboxylase (URO-D)
A388_01224	PF05675	A388_01224
A388_01225	PF11220	A388_01225
A388_01226	PF13387	A388_01226
A388_01227	PF00144	Beta-lactamase
A388_01228	PF00665	Integrase core domain
A388_01228	PF13936	Helix-turn-helix domain
A388_01229	PF01227	GTP cyclohydrolase I
A388_01230	PF00941	FAD binding domain in molybdopterin dehydrogenase
A388_01230	PF01799	[2Fe-2S] binding domain
A388_01230	PF03450	CO dehydrogenase flavoprotein C-terminal domain
A388_01231	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A388_01231	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
A388_01232	PF02625	XdhC and CoxI family
A388_01232	PF13478	XdhC Rossmann domain
A388_01233	PF01713	Smr domain
A388_01234	PF00218	Indole-3-glycerol phosphate synthase
A388_01235	PF00591	Glycosyl transferase family, a/b domain
A388_01235	PF02885	Glycosyl transferase family, helical bundle domain
A388_01236	PF00593	TonB dependent receptor
A388_01236	PF07715	TonB-dependent Receptor Plug Domain
A388_01237	PF01433	Peptidase family M1
A388_01237	PF11838	ERAP1-like C-terminal domain
A388_01238	PF00117	Glutamine amidotransferase class-I
A388_01239	PF00557	Metallopeptidase family M24
A388_01239	PF01321	Creatinase/Prolidase N-terminal domain
A388_01239	PF16188	A388_01239
A388_01239	PF16189	A388_01239
A388_01240	PF00854	POT family
A388_01241	PF00120	Glutamine synthetase, catalytic domain
A388_01241	PF03951	Glutamine synthetase, beta-Grasp domain
A388_01242	PF04345	Chorismate lyase
A388_01243	PF01040	UbiA prenyltransferase family
A388_01244	PF03583	Secretory lipase
A388_01246	PF10881	A388_01246
A388_01250	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
A388_01250	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
A388_01251	PF01784	NIF3 (NGG1p interacting factor 3)
A388_01252	PF13180	PDZ domain
A388_01252	PF13365	Trypsin-like peptidase domain
A388_01253	PF01743	Poly A polymerase head domain
A388_01253	PF12627	Probable RNA and SrmB- binding site of polymerase A
A388_01254	PF00390	Malic enzyme, N-terminal domain
A388_01254	PF01515	Phosphate acetyl/butaryl transferase
A388_01254	PF03949	Malic enzyme, NAD binding domain
A388_01255	PF00563	EAL domain
A388_01255	PF00989	PAS fold
A388_01255	PF00990	GGDEF domain
A388_01255	PF08447	PAS fold
A388_01256	PF04452	RNA methyltransferase
A388_01257	PF02219	Methylenetetrahydrofolate reductase
A388_01258	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A388_01258	PF05221	S-adenosyl-L-homocysteine hydrolase
A388_01259	PF03412	Peptidase C39 family
A388_01260	PF02627	Carboxymuconolactone decarboxylase family
A388_01261	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_01261	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_01261	PF09317	A388_01261
A388_01262	PF04055	Radical SAM superfamily
A388_01262	PF16881	A388_01262
A388_01263	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A388_01263	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01265	PF07690	Major Facilitator Superfamily
A388_01266	PF07690	Major Facilitator Superfamily
A388_01267	PF03922	OmpW family
A388_01269	PF00557	Metallopeptidase family M24
A388_01270	PF00318	Ribosomal protein S2
A388_01271	PF00889	Elongation factor TS
A388_01272	PF11948	A388_01272
A388_01273	PF02311	AraC-like ligand binding domain
A388_01273	PF12833	Helix-turn-helix domain
A388_01274	PF03591	A388_01274
A388_01275	PF05437	A388_01275
A388_01276	PF06127	A388_01276
A388_01277	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
A388_01278	PF13406	Transglycosylase SLT domain
A388_01279	PF01098	A388_01279
A388_01281	PF14489	QueF-like protein
A388_01281	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
A388_01282	PF01061	A388_01282
A388_01283	PF00005	ABC transporter
A388_01284	PF00589	Phage integrase family
A388_01288	PF01609	Transposase DDE domain
A388_01289	PF01609	Transposase DDE domain
A388_01297	PF02384	N-6 DNA Methylase
A388_01299	PF00717	Peptidase S24-like
A388_01299	PF01381	Helix-turn-helix
A388_01304	PF04492	A388_01304
A388_01305	PF00772	DnaB-like helicase N terminal domain
A388_01305	PF03796	DnaB-like helicase C terminal domain
A388_01325	PF10045	A388_01325
A388_01326	PF17289	A388_01326
A388_01327	PF13264	A388_01327
A388_01328	PF04233	A388_01328
A388_01334	PF10281	A388_01334
A388_01339	PF13554	Bacteriophage related domain of unknown function
A388_01345	PF03869	Arc-like DNA binding domain
A388_01346	PF03869	Arc-like DNA binding domain
A388_01347	PF08346	A388_01347
A388_01348	PF02498	A388_01348
A388_01349	PF03869	Arc-like DNA binding domain
A388_01350	PF03869	Arc-like DNA binding domain
A388_01354	PF01464	Transglycosylase SLT domain
A388_01356	PF08875	A388_01356
A388_01361	PF00959	Phage lysozyme
A388_01362	PF15956	A388_01362
A388_01366	PF12843	A388_01366
A388_01367	PF03583	Secretory lipase
A388_01368	PF00464	Serine hydroxymethyltransferase
A388_01369	PF02321	Outer membrane efflux protein
A388_01370	PF00873	AcrB/AcrD/AcrF family
A388_01371	PF16576	A388_01371
A388_01372	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01372	PF03466	LysR substrate binding domain
A388_01373	PF00497	Bacterial extracellular solute-binding proteins, family 3
A388_01374	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01375	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01376	PF00005	ABC transporter
A388_01377	PF00893	Small Multidrug Resistance protein
A388_01379	PF01136	A388_01379
A388_01379	PF16325	A388_01379
A388_01380	PF00155	Aminotransferase class I and II
A388_01380	PF00392	Bacterial regulatory proteins, gntR family
A388_01381	PF02567	Phenazine biosynthesis-like protein
A388_01382	PF00175	Oxidoreductase NAD-binding domain
A388_01382	PF00970	Oxidoreductase FAD-binding domain
A388_01383	PF01980	Uncharacterised protein family UPF0066
A388_01384	PF02308	A388_01384
A388_01384	PF13194	A388_01384
A388_01385	PF00437	Type II/IV secretion system protein
A388_01385	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
A388_01386	PF04076	Bacterial OB fold (BOF) protein
A388_01387	PF00072	Response regulator receiver domain
A388_01387	PF00486	Transcriptional regulatory protein, C terminal
A388_01388	PF00512	His Kinase A (phospho-acceptor) domain
A388_01388	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01389	PF10636	Hemin uptake protein hemP
A388_01390	PF00293	NUDIX domain
A388_01390	PF02581	Thiamine monophosphate synthase/TENI
A388_01392	PF00905	Penicillin binding protein transpeptidase domain
A388_01392	PF00912	Transglycosylase
A388_01392	PF14814	Bifunctional transglycosylase second domain
A388_01393	PF01513	ATP-NAD kinase
A388_01394	PF07023	A388_01394
A388_01395	PF00591	Glycosyl transferase family, a/b domain
A388_01395	PF02885	Glycosyl transferase family, helical bundle domain
A388_01396	PF00375	Sodium:dicarboxylate symporter family
A388_01397	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_01397	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_01397	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_01398	PF00756	Putative esterase
A388_01399	PF00800	Prephenate dehydratase
A388_01399	PF01817	Chorismate mutase type II
A388_01399	PF01842	ACT domain
A388_01400	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
A388_01400	PF02153	Prephenate dehydrogenase
A388_01402	PF01546	Peptidase family M20/M25/M40
A388_01402	PF07687	Peptidase dimerisation domain
A388_01403	PF00753	Metallo-beta-lactamase superfamily
A388_01405	PF03883	A388_01405
A388_01406	PF05690	Thiazole biosynthesis protein ThiG
A388_01407	PF02597	ThiS family
A388_01408	PF04241	A388_01408
A388_01409	PF00140	Sigma-70 factor, region 1
A388_01409	PF04542	Sigma-70 region 2
A388_01409	PF04545	Sigma-70, region 4
A388_01410	PF01206	Sulfurtransferase TusA
A388_01411	PF00313	'Cold-shock' DNA-binding domain
A388_01412	PF00270	DEAD/DEAH box helicase
A388_01412	PF00271	Helicase conserved C-terminal domain
A388_01414	PF00881	Nitroreductase family
A388_01415	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
A388_01415	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
A388_01416	PF00300	Histidine phosphatase superfamily (branch 1)
A388_01417	PF05134	Type II secretion system (T2SS), protein L
A388_01417	PF12693	GspL periplasmic domain
A388_01418	PF04612	Type II secretion system (T2SS), protein M
A388_01419	PF01180	Dihydroorotate dehydrogenase
A388_01420	PF02674	A388_01420
A388_01421	PF00156	Phosphoribosyl transferase domain
A388_01421	PF13522	Glutamine amidotransferase domain
A388_01422	PF01435	Peptidase family M48
A388_01424	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
A388_01424	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
A388_01425	PF01435	Peptidase family M48
A388_01426	PF09424	Yqey-like protein
A388_01427	PF01165	Ribosomal protein S21
A388_01428	PF00814	Glycoprotease family
A388_01430	PF05673	Protein of unknown function (DUF815)
A388_01431	PF01734	Patatin-like phospholipase
A388_01431	PF11815	A388_01431
A388_01432	PF00069	Protein kinase domain
A388_01437	PF03466	LysR substrate binding domain
A388_01438	PF01609	Transposase DDE domain
A388_01439	PF01609	Transposase DDE domain
A388_01440	PF00440	Bacterial regulatory proteins, tetR family
A388_01441	PF00892	EamA-like transporter family
A388_01442	PF04403	A388_01442
A388_01443	PF04403	A388_01443
A388_01444	PF02470	A388_01444
A388_01445	PF03886	Protein of unknown function (DUF330)
A388_01446	PF00576	HIUase/Transthyretin family
A388_01447	PF03928	Domain of unknown function (DUF336)
A388_01448	PF00072	Response regulator receiver domain
A388_01448	PF00486	Transcriptional regulatory protein, C terminal
A388_01449	PF00512	His Kinase A (phospho-acceptor) domain
A388_01449	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01450	PF08212	Lipocalin-like domain
A388_01451	PF00487	A388_01451
A388_01452	PF13450	NAD(P)-binding Rossmann-like domain
A388_01453	PF07103	A388_01453
A388_01454	PF02353	Mycolic acid cyclopropane synthetase
A388_01455	PF06966	A388_01455
A388_01456	PF02353	Mycolic acid cyclopropane synthetase
A388_01457	PF00512	His Kinase A (phospho-acceptor) domain
A388_01457	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01458	PF00072	Response regulator receiver domain
A388_01458	PF00486	Transcriptional regulatory protein, C terminal
A388_01459	PF16036	A388_01459
A388_01461	PF13302	Acetyltransferase (GNAT) domain
A388_01462	PF01177	Asp/Glu/Hydantoin racemase
A388_01463	PF00892	EamA-like transporter family
A388_01464	PF07995	Glucose / Sorbosone dehydrogenase
A388_01465	PF13673	Acetyltransferase (GNAT) domain
A388_01466	PF07690	Major Facilitator Superfamily
A388_01467	PF00440	Bacterial regulatory proteins, tetR family
A388_01467	PF16859	A388_01467
A388_01468	PF00375	Sodium:dicarboxylate symporter family
A388_01470	PF00753	Metallo-beta-lactamase superfamily
A388_01470	PF16123	A388_01470
A388_01471	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01472	PF00005	ABC transporter
A388_01472	PF09383	NIL domain
A388_01473	PF03180	NLPA lipoprotein
A388_01474	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
A388_01474	PF02843	Phosphoribosylglycinamide synthetase, C domain
A388_01474	PF02844	Phosphoribosylglycinamide synthetase, N domain
A388_01475	PF01808	AICARFT/IMPCHase bienzyme
A388_01475	PF02142	MGS-like domain
A388_01476	PF02954	Bacterial regulatory protein, Fis family
A388_01477	PF11906	A388_01477
A388_01478	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
A388_01480	PF01134	Glucose inhibited division protein A
A388_01480	PF13932	GidA associated domain 3
A388_01481	PF13280	A388_01481
A388_01482	PF14403	A388_01482
A388_01483	PF04168	A388_01483
A388_01484	PF01841	Transglutaminase-like superfamily
A388_01484	PF08379	A388_01484
A388_01485	PF00227	Proteasome subunit
A388_01486	PF00842	Alanine racemase, C-terminal domain
A388_01486	PF01168	Alanine racemase, N-terminal domain
A388_01487	PF00772	DnaB-like helicase N terminal domain
A388_01487	PF03796	DnaB-like helicase C terminal domain
A388_01488	PF01281	Ribosomal protein L9, N-terminal domain
A388_01488	PF03948	Ribosomal protein L9, C-terminal domain
A388_01489	PF01084	Ribosomal protein S18
A388_01490	PF01250	Ribosomal protein S6
A388_01491	PF01040	UbiA prenyltransferase family
A388_01492	PF03626	A388_01492
A388_01493	PF00510	Cytochrome c oxidase subunit III
A388_01494	PF00115	Cytochrome C and Quinol oxidase polypeptide I
A388_01495	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
A388_01495	PF06481	COX Aromatic Rich Motif
A388_01496	PF06271	A388_01496
A388_01496	PF14237	A388_01496
A388_01497	PF00391	PEP-utilising enzyme, mobile domain
A388_01497	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
A388_01497	PF02896	PEP-utilising enzyme, TIM barrel domain
A388_01498	PF03618	A388_01498
A388_01500	PF01522	Polysaccharide deacetylase
A388_01500	PF14883	Hypothetical glycosyl hydrolase family 13
A388_01501	PF13641	Glycosyltransferase like family 2
A388_01502	PF13994	A388_01502
A388_01504	PF00296	Luciferase-like monooxygenase
A388_01507	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01507	PF03466	LysR substrate binding domain
A388_01508	PF17124	A388_01508
A388_01509	PF00472	RF-1 domain
A388_01509	PF03462	PCRF domain
A388_01510	PF05175	Methyltransferase small domain
A388_01511	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01512	PF09084	NMT1/THI5 like
A388_01513	PF12625	A388_01513
A388_01513	PF12833	Helix-turn-helix domain
A388_01514	PF00106	short chain dehydrogenase
A388_01515	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_01515	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_01515	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_01516	PF00501	AMP-binding enzyme
A388_01516	PF13193	AMP-binding enzyme C-terminal domain
A388_01517	PF01613	Flavin reductase like domain
A388_01518	PF00899	ThiF family
A388_01519	PF03109	A388_01519
A388_01520	PF02152	Dihydroneopterin aldolase
A388_01521	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
A388_01522	PF03814	A388_01522
A388_01523	PF00122	E1-E2 ATPase
A388_01523	PF00702	haloacid dehalogenase-like hydrolase
A388_01524	PF02669	A388_01524
A388_01525	PF00512	His Kinase A (phospho-acceptor) domain
A388_01525	PF00582	Universal stress protein family
A388_01525	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01525	PF02702	Osmosensitive K+ channel His kinase sensor domain
A388_01525	PF13493	Domain of unknown function (DUF4118)
A388_01526	PF00072	Response regulator receiver domain
A388_01526	PF00486	Transcriptional regulatory protein, C terminal
A388_01527	PF00120	Glutamine synthetase, catalytic domain
A388_01528	PF10973	A388_01528
A388_01529	PF03232	A388_01529
A388_01530	PF07690	Major Facilitator Superfamily
A388_01531	PF01103	Surface antigen
A388_01531	PF07244	Surface antigen variable number repeat
A388_01531	PF17243	A388_01531
A388_01532	PF04357	A388_01532
A388_01534	PF00330	Aconitase family (aconitate hydratase)
A388_01534	PF06434	Aconitate hydratase 2 N-terminus
A388_01534	PF11791	Aconitate B N-terminal domain
A388_01536	PF00520	Ion transport protein
A388_01537	PF07690	Major Facilitator Superfamily
A388_01539	PF10670	A388_01539
A388_01540	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01540	PF03466	LysR substrate binding domain
A388_01541	PF04284	A388_01541
A388_01543	PF00849	RNA pseudouridylate synthase
A388_01543	PF01479	S4 domain
A388_01544	PF00583	Acetyltransferase (GNAT) family
A388_01545	PF04221	RelB antitoxin
A388_01546	PF00849	RNA pseudouridylate synthase
A388_01547	PF02367	Uncharacterised P-loop hydrolase UPF0079
A388_01548	PF01119	DNA mismatch repair protein, C-terminal domain
A388_01548	PF08676	MutL C terminal dimerisation domain
A388_01548	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01549	PF01715	IPP transferase
A388_01550	PF17209	A388_01550
A388_01551	PF00892	EamA-like transporter family
A388_01552	PF00881	Nitroreductase family
A388_01553	PF00149	Calcineurin-like phosphoesterase
A388_01554	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
A388_01555	PF00749	tRNA synthetases class I (E and Q), catalytic domain
A388_01555	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
A388_01556	PF00117	Glutamine amidotransferase class-I
A388_01557	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
A388_01558	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
A388_01559	PF13520	Amino acid permease
A388_01560	PF00171	Aldehyde dehydrogenase family
A388_01562	PF12146	Putative lysophospholipase
A388_01563	PF00465	Iron-containing alcohol dehydrogenase
A388_01564	PF05970	A388_01564
A388_01564	PF14493	A388_01564
A388_01565	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
A388_01566	PF02110	Hydroxyethylthiazole kinase family
A388_01569	PF01433	Peptidase family M1
A388_01569	PF11940	Domain of unknown function (DUF3458)
A388_01569	PF17432	A388_01569
A388_01570	PF05229	A388_01570
A388_01571	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
A388_01572	PF00577	Outer membrane usher protein
A388_01572	PF13953	PapC C-terminal domain
A388_01573	PF05229	A388_01573
A388_01574	PF13417	Glutathione S-transferase, N-terminal domain
A388_01574	PF14497	Glutathione S-transferase, C-terminal domain
A388_01575	PF00106	short chain dehydrogenase
A388_01576	PF00106	short chain dehydrogenase
A388_01577	PF01817	Chorismate mutase type II
A388_01578	PF01037	AsnC family
A388_01578	PF13412	Winged helix-turn-helix DNA-binding
A388_01582	PF00665	Integrase core domain
A388_01582	PF13936	Helix-turn-helix domain
A388_01584	PF00440	Bacterial regulatory proteins, tetR family
A388_01585	PF00593	TonB dependent receptor
A388_01585	PF07715	TonB-dependent Receptor Plug Domain
A388_01586	PF00924	Mechanosensitive ion channel
A388_01591	PF13527	Acetyltransferase (GNAT) domain
A388_01592	PF00593	TonB dependent receptor
A388_01592	PF07715	TonB-dependent Receptor Plug Domain
A388_01593	PF03922	OmpW family
A388_01596	PF00005	ABC transporter
A388_01597	PF00582	Universal stress protein family
A388_01600	PF06271	A388_01600
A388_01601	PF00122	E1-E2 ATPase
A388_01601	PF00690	Cation transporter/ATPase, N-terminus
A388_01601	PF00702	haloacid dehalogenase-like hydrolase
A388_01602	PF02308	A388_01602
A388_01603	PF03594	A388_01603
A388_01604	PF01037	AsnC family
A388_01604	PF13412	Winged helix-turn-helix DNA-binding
A388_01605	PF01810	A388_01605
A388_01606	PF00923	Transaldolase
A388_01607	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01607	PF03466	LysR substrate binding domain
A388_01608	PF05232	A388_01608
A388_01609	PF00108	Thiolase, N-terminal domain
A388_01609	PF02803	Thiolase, C-terminal domain
A388_01610	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_01611	PF01575	MaoC like domain
A388_01612	PF00144	Beta-lactamase
A388_01613	PF00440	Bacterial regulatory proteins, tetR family
A388_01614	PF07690	Major Facilitator Superfamily
A388_01615	PF12169	DNA polymerase III subunits gamma and tau domain III
A388_01615	PF13177	DNA polymerase III, delta subunit
A388_01617	PF04185	Phosphoesterase family
A388_01617	PF05506	A388_01617
A388_01618	PF13279	Thioesterase-like superfamily
A388_01619	PF00465	Iron-containing alcohol dehydrogenase
A388_01620	PF10282	Lactonase, 7-bladed beta-propeller
A388_01621	PF01451	Low molecular weight phosphotyrosine protein phosphatase
A388_01622	PF01565	FAD binding domain
A388_01622	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
A388_01623	PF02698	DUF218 domain
A388_01624	PF12146	Putative lysophospholipase
A388_01625	PF01645	Conserved region in glutamate synthase
A388_01626	PF03929	A388_01626
A388_01627	PF00440	Bacterial regulatory proteins, tetR family
A388_01628	PF14518	Iron-containing redox enzyme
A388_01629	PF12832	MFS_1 like family
A388_01631	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
A388_01631	PF02785	Biotin carboxylase C-terminal domain
A388_01631	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A388_01632	PF00364	Biotin-requiring enzyme
A388_01633	PF01220	Dehydroquinase class II
A388_01634	PF00817	impB/mucB/samB family
A388_01634	PF11799	impB/mucB/samB family C-terminal domain
A388_01634	PF13438	A388_01634
A388_01635	PF13379	NMT1-like family
A388_01636	PF00072	Response regulator receiver domain
A388_01636	PF03861	ANTAR domain
A388_01638	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
A388_01638	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
A388_01638	PF04324	BFD-like [2Fe-2S] binding domain
A388_01638	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01639	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01639	PF13806	Rieske-like [2Fe-2S] domain
A388_01640	PF00384	Molybdopterin oxidoreductase
A388_01640	PF01568	Molydopterin dinucleotide binding domain
A388_01640	PF04324	BFD-like [2Fe-2S] binding domain
A388_01640	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
A388_01641	PF12804	MobA-like NTP transferase domain
A388_01642	PF00384	Molybdopterin oxidoreductase
A388_01642	PF01568	Molydopterin dinucleotide binding domain
A388_01642	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
A388_01643	PF04055	Radical SAM superfamily
A388_01643	PF06463	Molybdenum Cofactor Synthesis C
A388_01643	PF13353	4Fe-4S single cluster domain
A388_01644	PF02597	ThiS family
A388_01645	PF02391	MoaE protein
A388_01646	PF00994	Probable molybdopterin binding domain
A388_01646	PF01967	MoaC family
A388_01647	PF00994	Probable molybdopterin binding domain
A388_01647	PF03453	MoeA N-terminal region (domain I and II)
A388_01647	PF03454	MoeA C-terminal region (domain IV)
A388_01648	PF01638	HxlR-like helix-turn-helix
A388_01649	PF00155	Aminotransferase class I and II
A388_01649	PF00392	Bacterial regulatory proteins, gntR family
A388_01650	PF00892	EamA-like transporter family
A388_01651	PF04358	DsrC like protein
A388_01654	PF02635	DsrE/DsrF-like family
A388_01655	PF01370	NAD dependent epimerase/dehydratase family
A388_01656	PF00206	Lyase
A388_01656	PF10415	Fumarase C C-terminus
A388_01660	PF01266	FAD dependent oxidoreductase
A388_01662	PF02542	YgbB family
A388_01664	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
A388_01664	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
A388_01665	PF00440	Bacterial regulatory proteins, tetR family
A388_01666	PF00072	Response regulator receiver domain
A388_01666	PF00158	Sigma-54 interaction domain
A388_01666	PF02954	Bacterial regulatory protein, Fis family
A388_01667	PF00512	His Kinase A (phospho-acceptor) domain
A388_01667	PF00989	PAS fold
A388_01667	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01668	PF00919	Uncharacterized protein family UPF0004
A388_01668	PF04055	Radical SAM superfamily
A388_01669	PF00696	Amino acid kinase family
A388_01670	PF01765	Ribosome recycling factor
A388_01671	PF01255	Putative undecaprenyl diphosphate synthase
A388_01672	PF01148	Cytidylyltransferase family
A388_01673	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
A388_01673	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
A388_01673	PF13288	DXP reductoisomerase C-terminal domain
A388_01674	PF00595	PDZ domain (Also known as DHR or GLGF)
A388_01674	PF02163	Peptidase family M50
A388_01674	PF13180	PDZ domain
A388_01675	PF01103	Surface antigen
A388_01675	PF07244	Surface antigen variable number repeat
A388_01676	PF03938	Outer membrane protein (OmpH-like)
A388_01677	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_01677	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
A388_01677	PF14602	Hexapeptide repeat of succinyl-transferase
A388_01678	PF07977	FabA-like domain
A388_01679	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_01679	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
A388_01680	PF13174	Tetratricopeptide repeat
A388_01680	PF16331	A388_01680
A388_01681	PF02631	RecX family
A388_01682	PF00154	recA bacterial DNA recombination protein
A388_01683	PF01479	S4 domain
A388_01684	PF13419	Haloacid dehalogenase-like hydrolase
A388_01685	PF05666	A388_01685
A388_01688	PF13302	Acetyltransferase (GNAT) domain
A388_01689	PF01037	AsnC family
A388_01689	PF13412	Winged helix-turn-helix DNA-binding
A388_01690	PF00266	Aminotransferase class-V
A388_01691	PF00324	Amino acid permease
A388_01692	PF07859	alpha/beta hydrolase fold
A388_01693	PF00082	Subtilase family
A388_01693	PF05922	Peptidase inhibitor I9
A388_01694	PF00916	A388_01694
A388_01694	PF01740	STAS domain
A388_01695	PF02586	Uncharacterised ACR, COG2135
A388_01696	PF07995	Glucose / Sorbosone dehydrogenase
A388_01697	PF00582	Universal stress protein family
A388_01698	PF00563	EAL domain
A388_01698	PF00990	GGDEF domain
A388_01698	PF08447	PAS fold
A388_01698	PF08448	PAS fold
A388_01700	PF01047	MarR family
A388_01701	PF08308	A388_01701
A388_01702	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
A388_01702	PF02378	Phosphotransferase system, EIIC
A388_01704	PF00294	pfkB family carbohydrate kinase
A388_01705	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
A388_01705	PF00381	PTS HPr component phosphorylation site
A388_01705	PF00391	PEP-utilising enzyme, mobile domain
A388_01705	PF02896	PEP-utilising enzyme, TIM barrel domain
A388_01705	PF05524	PEP-utilising enzyme, N-terminal
A388_01706	PF12146	Putative lysophospholipase
A388_01709	PF03928	Domain of unknown function (DUF336)
A388_01710	PF05525	A388_01710
A388_01711	PF00557	Metallopeptidase family M24
A388_01712	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01712	PF03466	LysR substrate binding domain
A388_01714	PF00462	Glutaredoxin
A388_01715	PF00202	Aminotransferase class-III
A388_01716	PF00571	CBS domain
A388_01717	PF11042	A388_01717
A388_01721	PF00448	SRP54-type protein, GTPase domain
A388_01721	PF02881	SRP54-type protein, helical bundle domain
A388_01722	PF00881	Nitroreductase family
A388_01723	PF09829	A388_01723
A388_01724	PF09600	A388_01724
A388_01725	PF08173	A388_01725
A388_01726	PF02322	A388_01726
A388_01727	PF01654	A388_01727
A388_01729	PF13737	A388_01729
A388_01730	PF07290	A388_01730
A388_01731	PF00355	Rieske [2Fe-2S] domain
A388_01732	PF00294	pfkB family carbohydrate kinase
A388_01733	PF00593	TonB dependent receptor
A388_01733	PF07715	TonB-dependent Receptor Plug Domain
A388_01734	PF00675	Insulinase (Peptidase family M16)
A388_01734	PF05193	Peptidase M16 inactive domain
A388_01734	PF08367	Peptidase M16C associated
A388_01735	PF02253	Phospholipase A1
A388_01736	PF02386	Cation transport protein
A388_01737	PF02254	TrkA-N domain
A388_01738	PF00291	Pyridoxal-phosphate dependent enzyme
A388_01738	PF00585	C-terminal regulatory domain of Threonine dehydratase
A388_01739	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
A388_01740	PF01863	Protein of unknown function DUF45
A388_01742	PF01118	Semialdehyde dehydrogenase, NAD binding domain
A388_01742	PF02774	Semialdehyde dehydrogenase, dimerisation domain
A388_01744	PF02617	ATP-dependent Clp protease adaptor protein ClpS
A388_01745	PF00004	ATPase family associated with various cellular activities (AAA)
A388_01745	PF02861	Clp amino terminal domain
A388_01745	PF07724	AAA domain (Cdc48 subfamily)
A388_01745	PF10431	C-terminal, D2-small domain, of ClpB protein
A388_01746	PF02694	A388_01746
A388_01747	PF00793	DAHP synthetase I family
A388_01748	PF12697	Alpha/beta hydrolase family
A388_01749	PF03551	Transcriptional regulator PadR-like family
A388_01749	PF10400	Virulence activator alpha C-term
A388_01750	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_01750	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01751	PF12680	SnoaL-like domain
A388_01752	PF13472	GDSL-like Lipase/Acylhydrolase family
A388_01753	PF12146	Putative lysophospholipase
A388_01754	PF10118	A388_01754
A388_01756	PF00117	Glutamine amidotransferase class-I
A388_01756	PF06418	CTP synthase N-terminus
A388_01757	PF00793	DAHP synthetase I family
A388_01758	PF00113	Enolase, C-terminal TIM barrel domain
A388_01758	PF03952	Enolase, N-terminal domain
A388_01759	PF04239	Protein of unknown function (DUF421)
A388_01760	PF04977	Septum formation initiator
A388_01761	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
A388_01762	PF01144	Coenzyme A transferase
A388_01763	PF01144	Coenzyme A transferase
A388_01764	PF00108	Thiolase, N-terminal domain
A388_01764	PF02803	Thiolase, C-terminal domain
A388_01765	PF00206	Lyase
A388_01765	PF10397	Adenylosuccinate lyase C-terminus
A388_01766	PF00561	alpha/beta hydrolase fold
A388_01767	PF07690	Major Facilitator Superfamily
A388_01768	PF02627	Carboxymuconolactone decarboxylase family
A388_01769	PF00775	Dioxygenase
A388_01769	PF12391	Protocatechuate 3,4-dioxygenase beta subunit N terminal
A388_01770	PF00775	Dioxygenase
A388_01771	PF01487	Type I 3-dehydroquinase
A388_01772	PF13229	Right handed beta helix region
A388_01773	PF04966	Carbohydrate-selective porin, OprB family
A388_01774	PF01011	PQQ enzyme repeat
A388_01776	PF04143	A388_01776
A388_01777	PF04143	A388_01777
A388_01778	PF00753	Metallo-beta-lactamase superfamily
A388_01779	PF01614	Bacterial transcriptional regulator
A388_01779	PF09339	IclR helix-turn-helix domain
A388_01780	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01780	PF03466	LysR substrate binding domain
A388_01781	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_01781	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_01781	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_01782	PF01636	Phosphotransferase enzyme family
A388_01783	PF00300	Histidine phosphatase superfamily (branch 1)
A388_01784	PF00106	short chain dehydrogenase
A388_01785	PF03573	outer membrane porin, OprD family
A388_01786	PF07690	Major Facilitator Superfamily
A388_01787	PF01047	MarR family
A388_01788	PF01425	Amidase
A388_01789	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_01789	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
A388_01791	PF13577	SnoaL-like domain
A388_01792	PF00355	Rieske [2Fe-2S] domain
A388_01792	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
A388_01793	PF00866	Ring hydroxylating beta subunit
A388_01794	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_01795	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_01795	PF00175	Oxidoreductase NAD-binding domain
A388_01795	PF00970	Oxidoreductase FAD-binding domain
A388_01796	PF01613	Flavin reductase like domain
A388_01797	PF12833	Helix-turn-helix domain
A388_01797	PF14525	A388_01797
A388_01798	PF01179	Copper amine oxidase, enzyme domain
A388_01798	PF02727	Copper amine oxidase, N2 domain
A388_01798	PF02728	Copper amine oxidase, N3 domain
A388_01798	PF07833	Copper amine oxidase N-terminal domain
A388_01800	PF00171	Aldehyde dehydrogenase family
A388_01801	PF01804	Penicillin amidase
A388_01802	PF00561	alpha/beta hydrolase fold
A388_01803	PF00108	Thiolase, N-terminal domain
A388_01803	PF02803	Thiolase, C-terminal domain
A388_01804	PF01144	Coenzyme A transferase
A388_01805	PF01144	Coenzyme A transferase
A388_01806	PF00775	Dioxygenase
A388_01806	PF04444	Catechol dioxygenase N terminus
A388_01807	PF02426	Muconolactone delta-isomerase
A388_01808	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
A388_01808	PF13378	Enolase C-terminal domain-like
A388_01809	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01809	PF03466	LysR substrate binding domain
A388_01810	PF09694	A388_01810
A388_01811	PF00392	Bacterial regulatory proteins, gntR family
A388_01811	PF07729	FCD domain
A388_01812	PF00920	Dehydratase family
A388_01813	PF07690	Major Facilitator Superfamily
A388_01815	PF00171	Aldehyde dehydrogenase family
A388_01817	PF00561	alpha/beta hydrolase fold
A388_01818	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_01819	PF03435	Saccharopine dehydrogenase
A388_01820	PF01965	DJ-1/PfpI family
A388_01821	PF13411	MerR HTH family regulatory protein
A388_01822	PF01965	DJ-1/PfpI family
A388_01823	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_01824	PF02082	Transcriptional regulator
A388_01825	PF12706	Beta-lactamase superfamily domain
A388_01826	PF00440	Bacterial regulatory proteins, tetR family
A388_01827	PF12625	A388_01827
A388_01827	PF12833	Helix-turn-helix domain
A388_01828	PF00106	short chain dehydrogenase
A388_01829	PF06314	Acetoacetate decarboxylase (ADC)
A388_01830	PF10118	A388_01830
A388_01831	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_01833	PF07995	Glucose / Sorbosone dehydrogenase
A388_01835	PF03992	Antibiotic biosynthesis monooxygenase
A388_01836	PF00857	Isochorismatase family
A388_01837	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01837	PF03466	LysR substrate binding domain
A388_01838	PF07995	Glucose / Sorbosone dehydrogenase
A388_01839	PF00999	Sodium/hydrogen exchanger family
A388_01839	PF02254	TrkA-N domain
A388_01841	PF01546	Peptidase family M20/M25/M40
A388_01841	PF07687	Peptidase dimerisation domain
A388_01843	PF00440	Bacterial regulatory proteins, tetR family
A388_01845	PF00665	Integrase core domain
A388_01845	PF13936	Helix-turn-helix domain
A388_01847	PF10004	A388_01847
A388_01848	PF14568	SMI1-KNR4 cell-wall
A388_01850	PF13737	A388_01850
A388_01852	PF10077	A388_01852
A388_01853	PF07690	Major Facilitator Superfamily
A388_01854	PF04909	Amidohydrolase
A388_01855	PF07158	A388_01855
A388_01856	PF00392	Bacterial regulatory proteins, gntR family
A388_01856	PF07702	UTRA domain
A388_01857	PF08450	SMP-30/Gluconolaconase/LRE-like region
A388_01858	PF07690	Major Facilitator Superfamily
A388_01859	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01859	PF03466	LysR substrate binding domain
A388_01860	PF04657	A388_01860
A388_01861	PF04657	A388_01861
A388_01862	PF13437	HlyD family secretion protein
A388_01862	PF13533	Biotin-lipoyl like
A388_01863	PF07690	Major Facilitator Superfamily
A388_01864	PF00440	Bacterial regulatory proteins, tetR family
A388_01864	PF14246	AefR-like transcriptional repressor, C-terminal region
A388_01865	PF00171	Aldehyde dehydrogenase family
A388_01866	PF01609	Transposase DDE domain
A388_01867	PF01609	Transposase DDE domain
A388_01868	PF00920	Dehydratase family
A388_01869	PF01557	Fumarylacetoacetate (FAA) hydrolase family
A388_01870	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01870	PF03466	LysR substrate binding domain
A388_01871	PF01370	NAD dependent epimerase/dehydratase family
A388_01872	PF07690	Major Facilitator Superfamily
A388_01873	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
A388_01873	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
A388_01874	PF12833	Helix-turn-helix domain
A388_01875	PF00156	Phosphoribosyl transferase domain
A388_01876	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
A388_01877	PF00293	NUDIX domain
A388_01878	PF02219	Methylenetetrahydrofolate reductase
A388_01878	PF12225	A388_01878
A388_01880	PF00196	Bacterial regulatory proteins, luxR family
A388_01881	PF01425	Amidase
A388_01882	PF13737	A388_01882
A388_01884	PF00583	Acetyltransferase (GNAT) family
A388_01885	PF00326	Prolyl oligopeptidase family
A388_01886	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01886	PF03466	LysR substrate binding domain
A388_01887	PF00106	short chain dehydrogenase
A388_01888	PF00106	short chain dehydrogenase
A388_01889	PF12146	Putative lysophospholipase
A388_01890	PF12625	A388_01890
A388_01890	PF12833	Helix-turn-helix domain
A388_01892	PF00512	His Kinase A (phospho-acceptor) domain
A388_01892	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_01893	PF00072	Response regulator receiver domain
A388_01893	PF00486	Transcriptional regulatory protein, C terminal
A388_01894	PF16576	A388_01894
A388_01895	PF00873	AcrB/AcrD/AcrF family
A388_01896	PF02321	Outer membrane efflux protein
A388_01897	PF12146	Putative lysophospholipase
A388_01898	PF13738	Pyridine nucleotide-disulphide oxidoreductase
A388_01899	PF00440	Bacterial regulatory proteins, tetR family
A388_01900	PF01266	FAD dependent oxidoreductase
A388_01902	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
A388_01904	PF02486	A388_01904
A388_01910	PF05707	Zonular occludens toxin (Zot)
A388_01911	PF10734	A388_01911
A388_01913	PF10389	Bacteriophage coat protein B
A388_01916	PF02486	A388_01916
A388_01920	PF02486	A388_01920
A388_01924	PF05144	A388_01924
A388_01924	PF05155	A388_01924
A388_01927	PF05707	Zonular occludens toxin (Zot)
A388_01928	PF10734	A388_01928
A388_01929	PF05616	A388_01929
A388_01930	PF10389	Bacteriophage coat protein B
A388_01934	PF05144	A388_01934
A388_01934	PF05155	A388_01934
A388_01937	PF02486	A388_01937
A388_01940	PF13737	A388_01940
A388_01941	PF01609	Transposase DDE domain
A388_01942	PF01609	Transposase DDE domain
A388_01944	PF16970	A388_01944
A388_01945	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
A388_01945	PF02753	Pili assembly chaperone PapD, C-terminal domain
A388_01946	PF00577	Outer membrane usher protein
A388_01946	PF13953	PapC C-terminal domain
A388_01946	PF13954	PapC N-terminal domain
A388_01947	PF00419	Fimbrial protein
A388_01948	PF16223	A388_01948
A388_01949	PF00107	Zinc-binding dehydrogenase
A388_01949	PF08240	Alcohol dehydrogenase GroES-like domain
A388_01951	PF00199	Catalase
A388_01954	PF13091	PLD-like domain
A388_01958	PF01244	Membrane dipeptidase (Peptidase family M19)
A388_01959	PF04055	Radical SAM superfamily
A388_01959	PF13186	Iron-sulfur cluster-binding domain
A388_01959	PF13353	4Fe-4S single cluster domain
A388_01960	PF05402	Coenzyme PQQ synthesis protein D (PqqD)
A388_01961	PF03070	TENA/THI-4/PQQC family
A388_01962	PF12706	Beta-lactamase superfamily domain
A388_01963	PF02503	Polyphosphate kinase middle domain
A388_01963	PF13089	Polyphosphate kinase N-terminal domain
A388_01963	PF13090	Polyphosphate kinase C-terminal domain
A388_01964	PF00149	Calcineurin-like phosphoesterase
A388_01964	PF02872	5'-nucleotidase, C-terminal domain
A388_01965	PF01475	Ferric uptake regulator family
A388_01966	PF00857	Isochorismatase family
A388_01967	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_01968	PF00005	ABC transporter
A388_01969	PF00528	Binding-protein-dependent transport system inner membrane component
A388_01970	PF13531	Bacterial extracellular solute-binding protein
A388_01971	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01972	PF00355	Rieske [2Fe-2S] domain
A388_01972	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
A388_01973	PF00866	Ring hydroxylating beta subunit
A388_01974	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_01974	PF00175	Oxidoreductase NAD-binding domain
A388_01974	PF00970	Oxidoreductase FAD-binding domain
A388_01975	PF12833	Helix-turn-helix domain
A388_01975	PF14525	A388_01975
A388_01976	PF13557	A388_01976
A388_01977	PF01613	Flavin reductase like domain
A388_01979	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_01980	PF01738	Dienelactone hydrolase family
A388_01981	PF07690	Major Facilitator Superfamily
A388_01982	PF12833	Helix-turn-helix domain
A388_01982	PF14525	A388_01982
A388_01983	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_01984	PF02447	A388_01984
A388_01986	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01986	PF03466	LysR substrate binding domain
A388_01987	PF01144	Coenzyme A transferase
A388_01988	PF01144	Coenzyme A transferase
A388_01989	PF02667	A388_01989
A388_01990	PF00108	Thiolase, N-terminal domain
A388_01990	PF02803	Thiolase, C-terminal domain
A388_01991	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01991	PF03466	LysR substrate binding domain
A388_01992	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_01992	PF03466	LysR substrate binding domain
A388_01995	PF00206	Lyase
A388_01995	PF10415	Fumarase C C-terminus
A388_01996	PF00593	TonB dependent receptor
A388_01996	PF07715	TonB-dependent Receptor Plug Domain
A388_01997	PF00083	Sugar (and other) transporter
A388_01997	PF07690	Major Facilitator Superfamily
A388_01998	PF06155	Protein of unknown function (DUF971)
A388_01999	PF13646	HEAT repeats
A388_02000	PF00005	ABC transporter
A388_02001	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02002	PF13379	NMT1-like family
A388_02003	PF13187	4Fe-4S dicluster domain
A388_02004	PF00890	FAD binding domain
A388_02004	PF02910	Fumarate reductase flavoprotein C-term
A388_02005	PF00392	Bacterial regulatory proteins, gntR family
A388_02005	PF07702	UTRA domain
A388_02006	PF02417	A388_02006
A388_02007	PF02525	Flavodoxin-like fold
A388_02008	PF01638	HxlR-like helix-turn-helix
A388_02009	PF12833	Helix-turn-helix domain
A388_02010	PF00892	EamA-like transporter family
A388_02011	PF00742	Homoserine dehydrogenase
A388_02011	PF03447	Homoserine dehydrogenase, NAD binding domain
A388_02012	PF01925	A388_02012
A388_02013	PF04273	Putative phosphatase (DUF442)
A388_02013	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02014	PF00753	Metallo-beta-lactamase superfamily
A388_02015	PF00158	Sigma-54 interaction domain
A388_02015	PF02954	Bacterial regulatory protein, Fis family
A388_02016	PF01062	A388_02016
A388_02017	PF00107	Zinc-binding dehydrogenase
A388_02017	PF08240	Alcohol dehydrogenase GroES-like domain
A388_02018	PF00106	short chain dehydrogenase
A388_02019	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
A388_02019	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02020	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A388_02020	PF00364	Biotin-requiring enzyme
A388_02020	PF02817	e3 binding domain
A388_02021	PF02779	Transketolase, pyrimidine binding domain
A388_02021	PF02780	Transketolase, C-terminal domain
A388_02022	PF00676	Dehydrogenase E1 component
A388_02023	PF04055	Radical SAM superfamily
A388_02026	PF00665	Integrase core domain
A388_02026	PF13936	Helix-turn-helix domain
A388_02027	PF03070	TENA/THI-4/PQQC family
A388_02028	PF00990	GGDEF domain
A388_02029	PF01264	Chorismate synthase
A388_02030	PF05175	Methyltransferase small domain
A388_02031	PF00291	Pyridoxal-phosphate dependent enzyme
A388_02032	PF05762	VWA domain containing CoxE-like protein
A388_02033	PF00004	ATPase family associated with various cellular activities (AAA)
A388_02035	PF05166	YcgL domain
A388_02039	PF00570	HRDC domain
A388_02039	PF01612	3'-5' exonuclease
A388_02040	PF02132	RecR protein
A388_02040	PF13662	Toprim domain
A388_02041	PF02575	YbaB/EbfC DNA-binding family
A388_02043	PF01053	Cys/Met metabolism PLP-dependent enzyme
A388_02044	PF00561	alpha/beta hydrolase fold
A388_02045	PF08241	Methyltransferase domain
A388_02046	PF13103	TonB C terminal
A388_02049	PF04828	Glutathione-dependent formaldehyde-activating enzyme
A388_02050	PF13308	YARHG domain
A388_02051	PF01230	HIT domain
A388_02052	PF13609	Gram-negative porin
A388_02053	PF06078	Bacterial protein of unknown function (DUF937)
A388_02055	PF10977	A388_02055
A388_02056	PF02684	A388_02056
A388_02057	PF07715	TonB-dependent Receptor Plug Domain
A388_02058	PF00593	TonB dependent receptor
A388_02060	PF03929	A388_02060
A388_02062	PF01925	A388_02062
A388_02063	PF00793	DAHP synthetase I family
A388_02064	PF02654	A388_02064
A388_02065	PF00328	Histidine phosphatase superfamily (branch 2)
A388_02066	PF00300	Histidine phosphatase superfamily (branch 1)
A388_02067	PF02277	Phosphoribosyltransferase
A388_02068	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
A388_02069	PF13563	2'-5' RNA ligase superfamily
A388_02070	PF08125	Mannitol dehydrogenase C-terminal domain
A388_02070	PF13419	Haloacid dehalogenase-like hydrolase
A388_02071	PF13523	Acetyltransferase (GNAT) domain
A388_02073	PF03929	A388_02073
A388_02075	PF00593	TonB dependent receptor
A388_02075	PF07715	TonB-dependent Receptor Plug Domain
A388_02076	PF03737	Demethylmenaquinone methyltransferase
A388_02077	PF11575	A388_02077
A388_02078	PF04183	IucA / IucC family
A388_02078	PF06276	Ferric iron reductase FhuF-like transporter
A388_02079	PF04183	IucA / IucC family
A388_02079	PF06276	Ferric iron reductase FhuF-like transporter
A388_02080	PF07690	Major Facilitator Superfamily
A388_02081	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
A388_02082	PF04183	IucA / IucC family
A388_02082	PF06276	Ferric iron reductase FhuF-like transporter
A388_02083	PF04073	Aminoacyl-tRNA editing domain
A388_02085	PF03109	A388_02085
A388_02086	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02086	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02087	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02087	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02088	PF00487	A388_02088
A388_02089	PF12833	Helix-turn-helix domain
A388_02089	PF12852	Cupin
A388_02090	PF13616	PPIC-type PPIASE domain
A388_02090	PF13624	SurA N-terminal domain
A388_02091	PF00216	Bacterial DNA-binding protein
A388_02092	PF05597	A388_02092
A388_02094	PF02082	Transcriptional regulator
A388_02095	PF00266	Aminotransferase class-V
A388_02096	PF01592	NifU-like N terminal domain
A388_02097	PF01521	Iron-sulphur cluster biosynthesis
A388_02098	PF00226	DnaJ domain
A388_02098	PF07743	HSCB C-terminal oligomerisation domain
A388_02099	PF00012	Hsp70 protein
A388_02100	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_02101	PF00211	Adenylate and Guanylate cyclase catalytic domain
A388_02102	PF01230	HIT domain
A388_02103	PF00270	DEAD/DEAH box helicase
A388_02103	PF00271	Helicase conserved C-terminal domain
A388_02103	PF02559	CarD-like/TRCF domain
A388_02103	PF03461	TRCF domain
A388_02105	PF04261	Dyp-type peroxidase family
A388_02106	PF13417	Glutathione S-transferase, N-terminal domain
A388_02107	PF03737	Demethylmenaquinone methyltransferase
A388_02108	PF01118	Semialdehyde dehydrogenase, NAD binding domain
A388_02109	PF01649	Ribosomal protein S20
A388_02110	PF00300	Histidine phosphatase superfamily (branch 1)
A388_02111	PF00459	Inositol monophosphatase family
A388_02113	PF02586	Uncharacterised ACR, COG2135
A388_02114	PF00005	ABC transporter
A388_02114	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
A388_02115	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02115	PF12911	A388_02115
A388_02116	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02117	PF01432	Peptidase family M3
A388_02118	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A388_02119	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A388_02121	PF00593	TonB dependent receptor
A388_02121	PF07715	TonB-dependent Receptor Plug Domain
A388_02122	PF03544	Gram-negative bacterial TonB protein C-terminal
A388_02123	PF01618	A388_02123
A388_02124	PF02472	Biopolymer transport protein ExbD/TolR
A388_02125	PF02472	Biopolymer transport protein ExbD/TolR
A388_02126	PF01274	Malate synthase
A388_02127	PF03969	AFG1-like ATPase
A388_02128	PF12625	A388_02128
A388_02128	PF12833	Helix-turn-helix domain
A388_02129	PF00743	Flavin-binding monooxygenase-like
A388_02130	PF03956	A388_02130
A388_02131	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
A388_02132	PF06305	A388_02132
A388_02133	PF00216	Bacterial DNA-binding protein
A388_02134	PF00575	S1 RNA binding domain
A388_02135	PF02224	Cytidylate kinase
A388_02136	PF10604	Polyketide cyclase / dehydrase and lipid transport
A388_02137	PF14437	A388_02137
A388_02138	PF16113	A388_02138
A388_02139	PF03167	Uracil DNA glycosylase superfamily
A388_02140	PF01242	6-pyruvoyl tetrahydropterin synthase
A388_02141	PF03934	Type II secretion system (T2SS), protein K
A388_02142	PF07963	Prokaryotic N-terminal methylation motif
A388_02142	PF11612	Type II secretion system (T2SS), protein J
A388_02143	PF02501	Type II secretion system (T2SS), protein I
A388_02143	PF07963	Prokaryotic N-terminal methylation motif
A388_02144	PF07963	Prokaryotic N-terminal methylation motif
A388_02145	PF00440	Bacterial regulatory proteins, tetR family
A388_02146	PF01026	TatD related DNase
A388_02147	PF07238	PilZ domain
A388_02148	PF13177	DNA polymerase III, delta subunit
A388_02149	PF02348	Cytidylyltransferase
A388_02150	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
A388_02151	PF00005	ABC transporter
A388_02151	PF00664	ABC transporter transmembrane region
A388_02152	PF02472	Biopolymer transport protein ExbD/TolR
A388_02153	PF01618	A388_02153
A388_02154	PF02195	ParB-like nuclease domain
A388_02155	PF13614	AAA domain
A388_02156	PF02527	rRNA small subunit methyltransferase G
A388_02157	PF00483	Nucleotidyl transferase
A388_02158	PF01636	Phosphotransferase enzyme family
A388_02159	PF03968	OstA-like protein
A388_02159	PF04453	Organic solvent tolerance protein
A388_02160	PF00639	PPIC-type PPIASE domain
A388_02160	PF09312	SurA N-terminal domain
A388_02160	PF13616	PPIC-type PPIASE domain
A388_02161	PF01116	Fructose-bisphosphate aldolase class-II
A388_02163	PF00162	Phosphoglycerate kinase
A388_02164	PF09996	Uncharacterized protein conserved in bacteria (DUF2237)
A388_02165	PF02545	Maf-like protein
A388_02166	PF08007	Cupin superfamily protein
A388_02167	PF00440	Bacterial regulatory proteins, tetR family
A388_02168	PF01022	Bacterial regulatory protein, arsR family
A388_02169	PF00375	Sodium:dicarboxylate symporter family
A388_02170	PF06912	A388_02170
A388_02171	PF09831	A388_02171
A388_02172	PF00005	ABC transporter
A388_02172	PF00664	ABC transporter transmembrane region
A388_02173	PF01575	MaoC like domain
A388_02174	PF12625	A388_02174
A388_02174	PF12833	Helix-turn-helix domain
A388_02175	PF01597	Glycine cleavage H-protein
A388_02176	PF02146	Sir2 family
A388_02177	PF00474	Sodium:solute symporter family
A388_02178	PF01037	AsnC family
A388_02178	PF13404	AsnC-type helix-turn-helix domain
A388_02179	PF00171	Aldehyde dehydrogenase family
A388_02179	PF01619	Proline dehydrogenase
A388_02179	PF14850	DNA-binding domain of Proline dehydrogenase
A388_02180	PF04229	GrpB protein
A388_02181	PF05958	tRNA (Uracil-5-)-methyltransferase
A388_02183	PF09992	Predicted periplasmic protein (DUF2233)
A388_02184	PF04970	Lecithin retinol acyltransferase
A388_02185	PF04264	YceI-like domain
A388_02186	PF02566	OsmC-like protein
A388_02187	PF00456	Transketolase, thiamine diphosphate binding domain
A388_02187	PF02779	Transketolase, pyrimidine binding domain
A388_02187	PF02780	Transketolase, C-terminal domain
A388_02188	PF00438	S-adenosylmethionine synthetase, N-terminal domain
A388_02188	PF02772	S-adenosylmethionine synthetase, central domain
A388_02188	PF02773	S-adenosylmethionine synthetase, C-terminal domain
A388_02191	PF04186	A388_02191
A388_02192	PF00905	Penicillin binding protein transpeptidase domain
A388_02193	PF13420	Acetyltransferase (GNAT) domain
A388_02194	PF01381	Helix-turn-helix
A388_02195	PF02075	Crossover junction endodeoxyribonuclease RuvC
A388_02196	PF01256	Carbohydrate kinase
A388_02196	PF03853	YjeF-related protein N-terminus
A388_02197	PF08331	A388_02197
A388_02197	PF13484	A388_02197
A388_02198	PF04055	Radical SAM superfamily
A388_02198	PF06968	Biotin and Thiamin Synthesis associated domain
A388_02201	PF16970	A388_02201
A388_02203	PF00665	Integrase core domain
A388_02203	PF13936	Helix-turn-helix domain
A388_02204	PF01636	Phosphotransferase enzyme family
A388_02205	PF00665	Integrase core domain
A388_02205	PF13936	Helix-turn-helix domain
A388_02206	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
A388_02206	PF02753	Pili assembly chaperone PapD, C-terminal domain
A388_02207	PF00577	Outer membrane usher protein
A388_02207	PF13953	PapC C-terminal domain
A388_02207	PF13954	PapC N-terminal domain
A388_02208	PF00419	Fimbrial protein
A388_02210	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02210	PF03466	LysR substrate binding domain
A388_02211	PF00892	EamA-like transporter family
A388_02213	PF00665	Integrase core domain
A388_02214	PF01527	Transposase
A388_02215	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
A388_02216	PF05232	A388_02216
A388_02217	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02217	PF03466	LysR substrate binding domain
A388_02219	PF00589	Phage integrase family
A388_02222	PF00665	Integrase core domain
A388_02222	PF13936	Helix-turn-helix domain
A388_02223	PF00440	Bacterial regulatory proteins, tetR family
A388_02224	PF01553	Acyltransferase
A388_02225	PF01709	Transcriptional regulator
A388_02226	PF01037	AsnC family
A388_02226	PF13412	Winged helix-turn-helix DNA-binding
A388_02228	PF00005	ABC transporter
A388_02229	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02230	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02231	PF00497	Bacterial extracellular solute-binding proteins, family 3
A388_02232	PF13417	Glutathione S-transferase, N-terminal domain
A388_02232	PF14497	Glutathione S-transferase, C-terminal domain
A388_02233	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02233	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02233	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
A388_02234	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02234	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
A388_02235	PF00296	Luciferase-like monooxygenase
A388_02236	PF03180	NLPA lipoprotein
A388_02237	PF03180	NLPA lipoprotein
A388_02238	PF00005	ABC transporter
A388_02239	PF13737	A388_02239
A388_02240	PF00005	ABC transporter
A388_02240	PF09383	NIL domain
A388_02241	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02242	PF01926	50S ribosome-binding GTPase
A388_02242	PF06071	Protein of unknown function (DUF933)
A388_02243	PF06127	A388_02243
A388_02244	PF00027	Cyclic nucleotide-binding domain
A388_02244	PF13545	Crp-like helix-turn-helix domain
A388_02247	PF03591	A388_02247
A388_02248	PF05437	A388_02248
A388_02249	PF14552	Tautomerase enzyme
A388_02250	PF02222	ATP-grasp domain
A388_02251	PF01909	Nucleotidyltransferase domain
A388_02251	PF01966	HD domain
A388_02251	PF08335	GlnD PII-uridylyltransferase
A388_02252	PF00155	Aminotransferase class I and II
A388_02253	PF01810	A388_02253
A388_02254	PF02311	AraC-like ligand binding domain
A388_02254	PF12833	Helix-turn-helix domain
A388_02255	PF00255	Glutathione peroxidase
A388_02256	PF01641	SelR domain
A388_02257	PF00155	Aminotransferase class I and II
A388_02258	PF00375	Sodium:dicarboxylate symporter family
A388_02259	PF00710	Asparaginase
A388_02260	PF02811	PHP domain
A388_02260	PF07733	Bacterial DNA polymerase III alpha subunit
A388_02260	PF14579	Helix-hairpin-helix motif
A388_02261	PF00588	SpoU rRNA Methylase family
A388_02262	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_02262	PF06426	Serine acetyltransferase, N-terminal
A388_02265	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02265	PF13192	Thioredoxin domain
A388_02266	PF02417	A388_02266
A388_02267	PF02417	A388_02267
A388_02268	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02268	PF03466	LysR substrate binding domain
A388_02269	PF01758	Sodium Bile acid symporter family
A388_02270	PF01022	Bacterial regulatory protein, arsR family
A388_02271	PF03960	ArsC family
A388_02272	PF07235	A388_02272
A388_02273	PF07969	Amidohydrolase family
A388_02274	PF00857	Isochorismatase family
A388_02275	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02275	PF03466	LysR substrate binding domain
A388_02276	PF00392	Bacterial regulatory proteins, gntR family
A388_02276	PF07729	FCD domain
A388_02277	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
A388_02278	PF01177	Asp/Glu/Hydantoin racemase
A388_02279	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
A388_02280	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02281	PF00005	ABC transporter
A388_02282	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
A388_02284	PF13610	A388_02284
A388_02285	PF00083	Sugar (and other) transporter
A388_02286	PF00296	Luciferase-like monooxygenase
A388_02287	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
A388_02289	PF01654	A388_02289
A388_02290	PF02322	A388_02290
A388_02292	PF00155	Aminotransferase class I and II
A388_02292	PF00392	Bacterial regulatory proteins, gntR family
A388_02293	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02293	PF03466	LysR substrate binding domain
A388_02294	PF03818	A388_02294
A388_02295	PF03817	A388_02295
A388_02296	PF00698	Acyl transferase domain
A388_02297	PF10620	A388_02297
A388_02298	PF06833	Malonate decarboxylase gamma subunit (MdcE)
A388_02299	PF01039	Carboxyl transferase domain
A388_02300	PF06857	A388_02300
A388_02301	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
A388_02302	PF16957	A388_02302
A388_02303	PF07690	Major Facilitator Superfamily
A388_02304	PF13302	Acetyltransferase (GNAT) domain
A388_02305	PF04299	Putative FMN-binding domain
A388_02306	PF00155	Aminotransferase class I and II
A388_02306	PF00392	Bacterial regulatory proteins, gntR family
A388_02307	PF04172	A388_02307
A388_02308	PF03788	A388_02308
A388_02309	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02309	PF03466	LysR substrate binding domain
A388_02310	PF13417	Glutathione S-transferase, N-terminal domain
A388_02310	PF14834	Glutathione S-transferase, C-terminal domain
A388_02311	PF00043	Glutathione S-transferase, C-terminal domain
A388_02311	PF02798	Glutathione S-transferase, N-terminal domain
A388_02312	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02312	PF03466	LysR substrate binding domain
A388_02313	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_02314	PF00581	Rhodanese-like domain
A388_02315	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_02315	PF06426	Serine acetyltransferase, N-terminal
A388_02317	PF00266	Aminotransferase class-V
A388_02318	PF01810	A388_02318
A388_02319	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02319	PF03466	LysR substrate binding domain
A388_02320	PF00497	Bacterial extracellular solute-binding proteins, family 3
A388_02321	PF00497	Bacterial extracellular solute-binding proteins, family 3
A388_02322	PF00005	ABC transporter
A388_02323	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02324	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02325	PF14542	GCN5-related N-acetyl-transferase
A388_02326	PF00072	Response regulator receiver domain
A388_02326	PF00196	Bacterial regulatory proteins, luxR family
A388_02327	PF00072	Response regulator receiver domain
A388_02327	PF00512	His Kinase A (phospho-acceptor) domain
A388_02327	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_02329	PF01037	AsnC family
A388_02329	PF13412	Winged helix-turn-helix DNA-binding
A388_02330	PF01810	A388_02330
A388_02331	PF00717	Peptidase S24-like
A388_02333	PF10685	A388_02333
A388_02335	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_02336	PF00199	Catalase
A388_02336	PF06628	Catalase-related immune-responsive
A388_02337	PF14518	Iron-containing redox enzyme
A388_02338	PF02464	Competence-damaged protein
A388_02346	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02346	PF03466	LysR substrate binding domain
A388_02347	PF13472	GDSL-like Lipase/Acylhydrolase family
A388_02349	PF13649	Methyltransferase domain
A388_02350	PF00501	AMP-binding enzyme
A388_02350	PF13193	AMP-binding enzyme C-terminal domain
A388_02351	PF00440	Bacterial regulatory proteins, tetR family
A388_02352	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02352	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02352	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02353	PF01039	Carboxyl transferase domain
A388_02354	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02355	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
A388_02355	PF00364	Biotin-requiring enzyme
A388_02355	PF02785	Biotin carboxylase C-terminal domain
A388_02355	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A388_02356	PF00682	HMGL-like
A388_02357	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02357	PF03466	LysR substrate binding domain
A388_02358	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
A388_02359	PF13622	Thioesterase-like superfamily
A388_02360	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02360	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02360	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02360	PF12418	A388_02360
A388_02360	PF12806	A388_02360
A388_02361	PF03061	Thioesterase superfamily
A388_02362	PF07690	Major Facilitator Superfamily
A388_02364	PF01144	Coenzyme A transferase
A388_02365	PF01144	Coenzyme A transferase
A388_02366	PF07690	Major Facilitator Superfamily
A388_02367	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02367	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02367	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02368	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02369	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_02370	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
A388_02370	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
A388_02371	PF00108	Thiolase, N-terminal domain
A388_02371	PF02803	Thiolase, C-terminal domain
A388_02372	PF01614	Bacterial transcriptional regulator
A388_02372	PF09339	IclR helix-turn-helix domain
A388_02373	PF07690	Major Facilitator Superfamily
A388_02374	PF03060	Nitronate monooxygenase
A388_02375	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02376	PF01614	Bacterial transcriptional regulator
A388_02376	PF09339	IclR helix-turn-helix domain
A388_02377	PF02515	CoA-transferase family III
A388_02378	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02378	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02378	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02379	PF07690	Major Facilitator Superfamily
A388_02380	PF13419	Haloacid dehalogenase-like hydrolase
A388_02381	PF00266	Aminotransferase class-V
A388_02382	PF01266	FAD dependent oxidoreductase
A388_02383	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02384	PF00005	ABC transporter
A388_02385	PF13343	Bacterial extracellular solute-binding protein
A388_02386	PF00392	Bacterial regulatory proteins, gntR family
A388_02386	PF07702	UTRA domain
A388_02387	PF01494	FAD binding domain
A388_02388	PF01614	Bacterial transcriptional regulator
A388_02388	PF09339	IclR helix-turn-helix domain
A388_02389	PF02525	Flavodoxin-like fold
A388_02390	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02390	PF03466	LysR substrate binding domain
A388_02391	PF02627	Carboxymuconolactone decarboxylase family
A388_02392	PF00171	Aldehyde dehydrogenase family
A388_02394	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
A388_02395	PF00171	Aldehyde dehydrogenase family
A388_02396	PF00296	Luciferase-like monooxygenase
A388_02397	PF01613	Flavin reductase like domain
A388_02398	PF12697	Alpha/beta hydrolase family
A388_02399	PF06684	Amino acid synthesis
A388_02400	PF00392	Bacterial regulatory proteins, gntR family
A388_02400	PF07729	FCD domain
A388_02401	PF07045	Protein of unknown function (DUF1330)
A388_02402	PF01292	Prokaryotic cytochrome b561
A388_02403	PF00199	Catalase
A388_02404	PF00665	Integrase core domain
A388_02404	PF13936	Helix-turn-helix domain
A388_02405	PF07690	Major Facilitator Superfamily
A388_02406	PF00682	HMGL-like
A388_02407	PF02515	CoA-transferase family III
A388_02408	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02408	PF03466	LysR substrate binding domain
A388_02413	PF00313	'Cold-shock' DNA-binding domain
A388_02415	PF13737	A388_02415
A388_02419	PF00440	Bacterial regulatory proteins, tetR family
A388_02420	PF00580	UvrD/REP helicase N-terminal domain
A388_02420	PF13361	UvrD-like helicase C-terminal domain
A388_02421	PF13175	AAA ATPase domain
A388_02422	PF03061	Thioesterase superfamily
A388_02423	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_02424	PF07848	PaaX-like protein
A388_02424	PF08223	PaaX-like protein C-terminal domain
A388_02425	PF00501	AMP-binding enzyme
A388_02425	PF14535	AMP-binding enzyme C-terminal domain
A388_02426	PF00108	Thiolase, N-terminal domain
A388_02426	PF02803	Thiolase, C-terminal domain
A388_02427	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
A388_02427	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
A388_02428	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02429	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02430	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_02430	PF00175	Oxidoreductase NAD-binding domain
A388_02430	PF00970	Oxidoreductase FAD-binding domain
A388_02431	PF01883	Domain of unknown function DUF59
A388_02432	PF05138	Phenylacetic acid catabolic protein
A388_02433	PF06243	Phenylacetic acid degradation B
A388_02434	PF05138	Phenylacetic acid catabolic protein
A388_02435	PF00171	Aldehyde dehydrogenase family
A388_02435	PF01575	MaoC like domain
A388_02436	PF03313	A388_02436
A388_02436	PF03315	Serine dehydratase beta chain
A388_02437	PF13520	Amino acid permease
A388_02438	PF00171	Aldehyde dehydrogenase family
A388_02439	PF00083	Sugar (and other) transporter
A388_02440	PF08448	PAS fold
A388_02440	PF12833	Helix-turn-helix domain
A388_02441	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02442	PF13510	2Fe-2S iron-sulfur cluster binding domain
A388_02443	PF01266	FAD dependent oxidoreductase
A388_02444	PF05544	Proline racemase
A388_02445	PF00392	Bacterial regulatory proteins, gntR family
A388_02445	PF07729	FCD domain
A388_02446	PF00892	EamA-like transporter family
A388_02447	PF00701	Dihydrodipicolinate synthetase family
A388_02449	PF03891	A388_02449
A388_02449	PF11720	Peptidase inhibitor I78 family
A388_02450	PF00376	MerR family regulatory protein
A388_02450	PF09278	MerR, DNA binding
A388_02452	PF02677	A388_02452
A388_02453	PF00583	Acetyltransferase (GNAT) family
A388_02454	PF06224	A388_02454
A388_02455	PF07690	Major Facilitator Superfamily
A388_02456	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
A388_02457	PF12796	Ankyrin repeats (3 copies)
A388_02458	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02458	PF03466	LysR substrate binding domain
A388_02459	PF13539	D-alanyl-D-alanine carboxypeptidase
A388_02461	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
A388_02462	PF05936	A388_02462
A388_02463	PF06812	A388_02463
A388_02464	PF00004	ATPase family associated with various cellular activities (AAA)
A388_02464	PF07724	AAA domain (Cdc48 subfamily)
A388_02464	PF10431	C-terminal, D2-small domain, of ClpB protein
A388_02465	PF05488	PAAR motif
A388_02466	PF00691	OmpA family
A388_02467	PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
A388_02468	PF06744	A388_02468
A388_02468	PF06761	A388_02468
A388_02468	PF14331	A388_02468
A388_02470	PF06996	A388_02470
A388_02471	PF05947	A388_02471
A388_02472	PF04965	Gene 25-like lysozyme
A388_02473	PF05638	Protein of unknown function (DUF796)
A388_02474	PF05943	A388_02474
A388_02475	PF00665	Integrase core domain
A388_02475	PF13936	Helix-turn-helix domain
A388_02477	PF05591	A388_02477
A388_02480	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02481	PF00005	ABC transporter
A388_02482	PF09084	NMT1/THI5 like
A388_02483	PF01425	Amidase
A388_02484	PF08753	NikR C terminal nickel binding domain
A388_02486	PF01638	HxlR-like helix-turn-helix
A388_02487	PF02525	Flavodoxin-like fold
A388_02488	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
A388_02488	PF00364	Biotin-requiring enzyme
A388_02488	PF02626	Allophanate hydrolase subunit 2
A388_02488	PF02682	Allophanate hydrolase subunit 1
A388_02488	PF02785	Biotin carboxylase C-terminal domain
A388_02488	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A388_02489	PF09347	Domain of unknown function (DUF1989)
A388_02490	PF09347	Domain of unknown function (DUF1989)
A388_02491	PF08240	Alcohol dehydrogenase GroES-like domain
A388_02491	PF13823	Alcohol dehydrogenase GroES-associated
A388_02492	PF10604	Polyketide cyclase / dehydrase and lipid transport
A388_02493	PF00440	Bacterial regulatory proteins, tetR family
A388_02497	PF08238	Sel1 repeat
A388_02498	PF00654	Voltage gated chloride channel
A388_02499	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
A388_02499	PF00364	Biotin-requiring enzyme
A388_02499	PF02785	Biotin carboxylase C-terminal domain
A388_02499	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
A388_02500	PF02626	Allophanate hydrolase subunit 2
A388_02500	PF02682	Allophanate hydrolase subunit 1
A388_02501	PF07286	Protein of unknown function (DUF1445)
A388_02502	PF03746	LamB/YcsF family
A388_02503	PF01566	A388_02503
A388_02504	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02504	PF03466	LysR substrate binding domain
A388_02511	PF03527	A388_02511
A388_02511	PF05593	A388_02511
A388_02511	PF14412	A388_02511
A388_02512	PF05954	Phage late control gene D protein (GPD)
A388_02512	PF10106	A388_02512
A388_02512	PF13296	A388_02512
A388_02513	PF13354	Beta-lactamase enzyme family
A388_02514	PF00583	Acetyltransferase (GNAT) family
A388_02516	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
A388_02516	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
A388_02517	PF08856	A388_02517
A388_02519	PF09917	Uncharacterized protein conserved in bacteria (DUF2147)
A388_02520	PF07690	Major Facilitator Superfamily
A388_02521	PF00440	Bacterial regulatory proteins, tetR family
A388_02522	PF01609	Transposase DDE domain
A388_02523	PF01609	Transposase DDE domain
A388_02524	PF03279	A388_02524
A388_02525	PF00563	EAL domain
A388_02527	PF00892	EamA-like transporter family
A388_02528	PF01037	AsnC family
A388_02528	PF13404	AsnC-type helix-turn-helix domain
A388_02529	PF00488	MutS domain V
A388_02529	PF01624	MutS domain I
A388_02529	PF05188	MutS domain II
A388_02529	PF05190	MutS family domain IV
A388_02529	PF05192	MutS domain III
A388_02530	PF13673	Acetyltransferase (GNAT) domain
A388_02531	PF00037	4Fe-4S binding domain
A388_02531	PF11953	Domain of unknown function (DUF3470)
A388_02532	PF08291	Peptidase M15
A388_02533	PF01596	O-methyltransferase
A388_02534	PF00582	Universal stress protein family
A388_02535	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_02535	PF14602	Hexapeptide repeat of succinyl-transferase
A388_02536	PF01205	Uncharacterized protein family UPF0029
A388_02536	PF09186	Domain of unknown function (DUF1949)
A388_02537	PF13437	HlyD family secretion protein
A388_02537	PF13533	Biotin-lipoyl like
A388_02538	PF00005	ABC transporter
A388_02538	PF00664	ABC transporter transmembrane region
A388_02539	PF02321	Outer membrane efflux protein
A388_02540	PF00005	ABC transporter
A388_02540	PF12399	Branched-chain amino acid ATP-binding cassette transporter
A388_02541	PF03968	OstA-like protein
A388_02542	PF06835	Lipopolysaccharide-assembly, LptC-related
A388_02543	PF08282	haloacid dehalogenase-like hydrolase
A388_02544	PF00571	CBS domain
A388_02544	PF01380	SIS domain
A388_02545	PF01406	tRNA synthetases class I (C) catalytic domain
A388_02545	PF09190	DALR domain
A388_02548	PF00589	Phage integrase family
A388_02552	PF05838	Glycosyl hydrolase 108
A388_02552	PF09374	Predicted Peptidoglycan domain
A388_02553	PF05838	Glycosyl hydrolase 108
A388_02554	PF16223	A388_02554
A388_02560	PF09979	A388_02560
A388_02562	PF09926	A388_02562
A388_02563	PF04233	A388_02563
A388_02564	PF06381	A388_02564
A388_02565	PF17289	A388_02565
A388_02566	PF10045	A388_02566
A388_02575	PF13628	A388_02575
A388_02577	PF01638	HxlR-like helix-turn-helix
A388_02578	PF07690	Major Facilitator Superfamily
A388_02579	PF04233	A388_02579
A388_02583	PF03807	NADP oxidoreductase coenzyme F420-dependent
A388_02583	PF14748	Pyrroline-5-carboxylate reductase dimerisation
A388_02585	PF13737	A388_02585
A388_02586	PF00313	'Cold-shock' DNA-binding domain
A388_02587	PF01810	A388_02587
A388_02588	PF05838	Glycosyl hydrolase 108
A388_02588	PF09374	Predicted Peptidoglycan domain
A388_02591	PF00717	Peptidase S24-like
A388_02591	PF12844	Helix-turn-helix domain
A388_02594	PF02601	A388_02594
A388_02594	PF13742	A388_02594
A388_02595	PF02609	Exonuclease VII small subunit
A388_02597	PF01810	A388_02597
A388_02599	PF03860	Domain of Unknown Function (DUF326)
A388_02601	PF04828	Glutathione-dependent formaldehyde-activating enzyme
A388_02602	PF00376	MerR family regulatory protein
A388_02602	PF09278	MerR, DNA binding
A388_02603	PF00122	E1-E2 ATPase
A388_02603	PF00403	Heavy-metal-associated domain
A388_02603	PF00702	haloacid dehalogenase-like hydrolase
A388_02604	PF00403	Heavy-metal-associated domain
A388_02605	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02605	PF03466	LysR substrate binding domain
A388_02606	PF00355	Rieske [2Fe-2S] domain
A388_02606	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
A388_02607	PF00866	Ring hydroxylating beta subunit
A388_02608	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_02608	PF00175	Oxidoreductase NAD-binding domain
A388_02608	PF00970	Oxidoreductase FAD-binding domain
A388_02609	PF00106	short chain dehydrogenase
A388_02610	PF03594	A388_02610
A388_02611	PF07690	Major Facilitator Superfamily
A388_02612	PF03573	outer membrane porin, OprD family
A388_02613	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
A388_02613	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
A388_02614	PF00270	DEAD/DEAH box helicase
A388_02614	PF00271	Helicase conserved C-terminal domain
A388_02614	PF04408	Helicase associated domain (HA2)
A388_02614	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
A388_02614	PF11898	A388_02614
A388_02615	PF00578	AhpC/TSA family
A388_02615	PF10417	C-terminal domain of 1-Cys peroxiredoxin
A388_02616	PF13619	A388_02616
A388_02617	PF01596	O-methyltransferase
A388_02618	PF07866	Protein of unknown function (DUF1653)
A388_02619	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02619	PF13192	Thioredoxin domain
A388_02621	PF00043	Glutathione S-transferase, C-terminal domain
A388_02621	PF02798	Glutathione S-transferase, N-terminal domain
A388_02622	PF00932	Lamin Tail Domain
A388_02623	PF02390	Putative methyltransferase
A388_02624	PF00043	Glutathione S-transferase, C-terminal domain
A388_02624	PF02798	Glutathione S-transferase, N-terminal domain
A388_02625	PF03807	NADP oxidoreductase coenzyme F420-dependent
A388_02625	PF10728	Domain of unknown function (DUF2520)
A388_02626	PF00691	OmpA family
A388_02628	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
A388_02628	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
A388_02630	PF01170	Putative RNA methylase family UPF0020
A388_02630	PF02926	THUMP domain
A388_02630	PF10672	S-adenosylmethionine-dependent methyltransferase
A388_02632	PF02464	Competence-damaged protein
A388_02633	PF00004	ATPase family associated with various cellular activities (AAA)
A388_02633	PF02861	Clp amino terminal domain
A388_02633	PF07724	AAA domain (Cdc48 subfamily)
A388_02633	PF10431	C-terminal, D2-small domain, of ClpB protein
A388_02634	PF01551	Peptidase family M23
A388_02635	PF00583	Acetyltransferase (GNAT) family
A388_02636	PF02566	OsmC-like protein
A388_02637	PF00027	Cyclic nucleotide-binding domain
A388_02637	PF00325	Bacterial regulatory proteins, crp family
A388_02638	PF00665	Integrase core domain
A388_02638	PF13936	Helix-turn-helix domain
A388_02639	PF00248	Aldo/keto reductase family
A388_02640	PF01435	Peptidase family M48
A388_02642	PF00709	Adenylosuccinate synthetase
A388_02643	PF13393	Histidyl-tRNA synthetase
A388_02644	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A388_02644	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
A388_02645	PF01411	tRNA synthetases class II (A)
A388_02645	PF02272	DHHA1 domain
A388_02645	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A388_02646	PF00589	Phage integrase family
A388_02646	PF13356	Domain of unknown function (DUF4102)
A388_02649	PF13737	A388_02649
A388_02651	PF05488	PAAR motif
A388_02655	PF16082	A388_02655
A388_02660	PF00271	Helicase conserved C-terminal domain
A388_02660	PF04851	Type III restriction enzyme, res subunit
A388_02668	PF09327	A388_02668
A388_02668	PF15711	A388_02668
A388_02683	PF12571	A388_02683
A388_02686	PF01258	Prokaryotic dksA/traR C4-type zinc finger
A388_02697	PF10547	A388_02697
A388_02698	PF15919	A388_02698
A388_02703	PF12844	Helix-turn-helix domain
A388_02704	PF05866	Endodeoxyribonuclease RusA
A388_02705	PF13737	A388_02705
A388_02708	PF01695	IstB-like ATP binding protein
A388_02710	PF00145	C-5 cytosine-specific DNA methylase
A388_02712	PF01507	Phosphoadenosine phosphosulfate reductase family
A388_02724	PF13935	A388_02724
A388_02731	PF00696	Amino acid kinase family
A388_02731	PF01842	ACT domain
A388_02731	PF13840	ACT domain
A388_02732	PF02599	Global regulator protein family
A388_02733	PF01351	Ribonuclease HII
A388_02735	PF01292	Prokaryotic cytochrome b561
A388_02736	PF00962	Adenosine/AMP deaminase
A388_02737	PF00860	Permease family
A388_02739	PF00743	Flavin-binding monooxygenase-like
A388_02740	PF00106	short chain dehydrogenase
A388_02741	PF10118	A388_02741
A388_02742	PF02678	Pirin
A388_02743	PF00440	Bacterial regulatory proteins, tetR family
A388_02744	PF10118	A388_02744
A388_02745	PF00106	short chain dehydrogenase
A388_02746	PF13738	Pyridine nucleotide-disulphide oxidoreductase
A388_02747	PF04072	Leucine carboxyl methyltransferase
A388_02748	PF12625	A388_02748
A388_02748	PF12833	Helix-turn-helix domain
A388_02749	PF00743	Flavin-binding monooxygenase-like
A388_02750	PF00106	short chain dehydrogenase
A388_02751	PF07859	alpha/beta hydrolase fold
A388_02752	PF00732	GMC oxidoreductase
A388_02752	PF05199	GMC oxidoreductase
A388_02753	PF03573	outer membrane porin, OprD family
A388_02754	PF07690	Major Facilitator Superfamily
A388_02755	PF00355	Rieske [2Fe-2S] domain
A388_02756	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_02757	PF00392	Bacterial regulatory proteins, gntR family
A388_02757	PF07729	FCD domain
A388_02758	PF01047	MarR family
A388_02759	PF07690	Major Facilitator Superfamily
A388_02760	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02761	PF00171	Aldehyde dehydrogenase family
A388_02762	PF00501	AMP-binding enzyme
A388_02763	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_02763	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_02763	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_02764	PF03573	outer membrane porin, OprD family
A388_02765	PF11578	Protein of unknown function (DUF3237)
A388_02766	PF03061	Thioesterase superfamily
A388_02767	PF07519	Tannase and feruloyl esterase
A388_02768	PF00392	Bacterial regulatory proteins, gntR family
A388_02768	PF07729	FCD domain
A388_02769	PF00171	Aldehyde dehydrogenase family
A388_02770	PF00701	Dihydrodipicolinate synthetase family
A388_02771	PF13378	Enolase C-terminal domain-like
A388_02772	PF07690	Major Facilitator Superfamily
A388_02773	PF04295	A388_02773
A388_02773	PF08666	SAF domain
A388_02774	PF00892	EamA-like transporter family
A388_02775	PF12625	A388_02775
A388_02775	PF12833	Helix-turn-helix domain
A388_02776	PF00171	Aldehyde dehydrogenase family
A388_02778	PF14085	A388_02778
A388_02780	PF00324	Amino acid permease
A388_02781	PF04958	Arginine N-succinyltransferase beta subunit
A388_02782	PF00202	Aminotransferase class-III
A388_02783	PF01037	AsnC family
A388_02783	PF13404	AsnC-type helix-turn-helix domain
A388_02784	PF00171	Aldehyde dehydrogenase family
A388_02785	PF12680	SnoaL-like domain
A388_02786	PF00392	Bacterial regulatory proteins, gntR family
A388_02786	PF07729	FCD domain
A388_02787	PF02743	Cache domain
A388_02788	PF00324	Amino acid permease
A388_02789	PF01266	FAD dependent oxidoreductase
A388_02790	PF00324	Amino acid permease
A388_02792	PF13086	AAA domain
A388_02792	PF13087	AAA domain
A388_02798	PF03527	A388_02798
A388_02798	PF05593	A388_02798
A388_02799	PF05954	Phage late control gene D protein (GPD)
A388_02799	PF10106	A388_02799
A388_02799	PF13296	A388_02799
A388_02800	PF00440	Bacterial regulatory proteins, tetR family
A388_02802	PF03180	NLPA lipoprotein
A388_02804	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_02804	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02805	PF00764	Arginosuccinate synthase
A388_02806	PF00990	GGDEF domain
A388_02807	PF01979	Amidohydrolase family
A388_02808	PF00929	Exonuclease
A388_02810	PF00593	TonB dependent receptor
A388_02810	PF07715	TonB-dependent Receptor Plug Domain
A388_02817	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_02818	PF00005	ABC transporter
A388_02819	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02820	PF00528	Binding-protein-dependent transport system inner membrane component
A388_02821	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
A388_02822	PF01464	Transglycosylase SLT domain
A388_02822	PF01476	LysM domain
A388_02823	PF00075	RNase H
A388_02823	PF00929	Exonuclease
A388_02825	PF00293	NUDIX domain
A388_02825	PF09297	NADH pyrophosphatase zinc ribbon domain
A388_02826	PF07859	alpha/beta hydrolase fold
A388_02827	PF04972	BON domain
A388_02828	PF02021	Uncharacterised protein family UPF0102
A388_02829	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
A388_02831	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02831	PF03466	LysR substrate binding domain
A388_02832	PF01810	A388_02832
A388_02833	PF01545	Cation efflux family
A388_02834	PF13411	MerR HTH family regulatory protein
A388_02836	PF01494	FAD binding domain
A388_02837	PF01494	FAD binding domain
A388_02838	PF00557	Metallopeptidase family M24
A388_02838	PF05195	Aminopeptidase P, N-terminal domain
A388_02839	PF03695	Uncharacterised protein family (UPF0149)
A388_02841	PF05164	Cell division protein ZapA
A388_02845	PF01812	5-formyltetrahydrofolate cyclo-ligase family
A388_02846	PF00004	ATPase family associated with various cellular activities (AAA)
A388_02846	PF02190	ATP-dependent protease La (LON) domain
A388_02846	PF05362	Lon protease (S16) C-terminal proteolytic domain
A388_02847	PF02590	Predicted SPOUT methyltransferase
A388_02848	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
A388_02849	PF03724	META domain
A388_02849	PF14302	A388_02849
A388_02850	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A388_02850	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
A388_02851	PF04060	Putative Fe-S cluster
A388_02851	PF14697	4Fe-4S dicluster domain
A388_02852	PF00633	Helix-hairpin-helix motif
A388_02852	PF00730	HhH-GPD superfamily base excision DNA repair protein
A388_02852	PF10576	Iron-sulfur binding domain of endonuclease III
A388_02853	PF00406	Adenylate kinase
A388_02853	PF05191	Adenylate kinase, active site lid
A388_02856	PF00905	Penicillin binding protein transpeptidase domain
A388_02856	PF03717	Penicillin-binding Protein dimerisation domain
A388_02857	PF03602	Conserved hypothetical protein 95
A388_02858	PF04955	A388_02858
A388_02859	PF02492	CobW/HypB/UreG, nucleotide-binding domain
A388_02860	PF01730	UreF
A388_02861	PF02814	UreE urease accessory protein, N-terminal domain
A388_02861	PF05194	UreE urease accessory protein, C-terminal domain
A388_02862	PF00449	Urease alpha-subunit, N-terminal domain
A388_02862	PF01979	Amidohydrolase family
A388_02863	PF00699	Urease beta subunit
A388_02864	PF00547	Urease, gamma subunit
A388_02865	PF01774	UreD urease accessory protein
A388_02867	PF04170	NlpE N-terminal domain
A388_02868	PF00463	Isocitrate lyase family
A388_02869	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02869	PF03466	LysR substrate binding domain
A388_02870	PF00571	CBS domain
A388_02870	PF01595	A388_02870
A388_02870	PF03471	Transporter associated domain
A388_02871	PF03600	Citrate transporter
A388_02873	PF09998	A388_02873
A388_02874	PF00009	Elongation factor Tu GTP binding domain
A388_02875	PF01507	Phosphoadenosine phosphosulfate reductase family
A388_02877	PF14052	Capsule assembly protein Wzi
A388_02878	PF00152	tRNA synthetases class II (D, K and N)
A388_02878	PF01336	OB-fold nucleic acid binding domain
A388_02879	PF05728	Uncharacterised protein family (UPF0227)
A388_02880	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
A388_02881	PF00301	Rubredoxin
A388_02882	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02883	PF00561	alpha/beta hydrolase fold
A388_02884	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02884	PF03466	LysR substrate binding domain
A388_02885	PF05036	Sporulation related domain
A388_02886	PF02503	Polyphosphate kinase middle domain
A388_02886	PF13089	Polyphosphate kinase N-terminal domain
A388_02886	PF13090	Polyphosphate kinase C-terminal domain
A388_02887	PF00912	Transglycosylase
A388_02888	PF01694	Rhomboid family
A388_02889	PF02687	A388_02889
A388_02890	PF00005	ABC transporter
A388_02891	PF13472	GDSL-like Lipase/Acylhydrolase family
A388_02892	PF00484	Carbonic anhydrase
A388_02893	PF12697	Alpha/beta hydrolase family
A388_02895	PF00593	TonB dependent receptor
A388_02895	PF07715	TonB-dependent Receptor Plug Domain
A388_02896	PF01106	NifU-like domain
A388_02896	PF01521	Iron-sulphur cluster biosynthesis
A388_02897	PF01694	Rhomboid family
A388_02898	PF00884	Sulfatase
A388_02899	PF03781	Sulfatase-modifying factor enzyme 1
A388_02902	PF00291	Pyridoxal-phosphate dependent enzyme
A388_02903	PF01384	A388_02903
A388_02904	PF00809	Pterin binding enzyme
A388_02904	PF02310	B12 binding domain
A388_02904	PF02574	Homocysteine S-methyltransferase
A388_02904	PF02607	B12 binding domain
A388_02904	PF02965	Vitamin B12 dependent methionine synthase, activation domain
A388_02905	PF02779	Transketolase, pyrimidine binding domain
A388_02905	PF02780	Transketolase, C-terminal domain
A388_02906	PF00456	Transketolase, thiamine diphosphate binding domain
A388_02907	PF07690	Major Facilitator Superfamily
A388_02908	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_02909	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02909	PF03466	LysR substrate binding domain
A388_02911	PF01263	Aldose 1-epimerase
A388_02912	PF07690	Major Facilitator Superfamily
A388_02913	PF12833	Helix-turn-helix domain
A388_02914	PF04960	Glutaminase
A388_02915	PF01327	Polypeptide deformylase
A388_02916	PF07690	Major Facilitator Superfamily
A388_02918	PF00205	Thiamine pyrophosphate enzyme, central domain
A388_02918	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A388_02918	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
A388_02919	PF00171	Aldehyde dehydrogenase family
A388_02920	PF01958	Domain of unknown function DUF108
A388_02920	PF03447	Homoserine dehydrogenase, NAD binding domain
A388_02921	PF00106	short chain dehydrogenase
A388_02922	PF12697	Alpha/beta hydrolase family
A388_02923	PF07883	Cupin domain
A388_02924	PF07690	Major Facilitator Superfamily
A388_02925	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_02925	PF14759	Reductase C-terminal
A388_02926	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
A388_02927	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_02928	PF00355	Rieske [2Fe-2S] domain
A388_02930	PF00355	Rieske [2Fe-2S] domain
A388_02931	PF01614	Bacterial transcriptional regulator
A388_02931	PF09339	IclR helix-turn-helix domain
A388_02933	PF04973	A388_02933
A388_02934	PF00378	Enoyl-CoA hydratase/isomerase family
A388_02935	PF13994	A388_02935
A388_02936	PF13641	Glycosyltransferase like family 2
A388_02937	PF01522	Polysaccharide deacetylase
A388_02937	PF14883	Hypothetical glycosyl hydrolase family 13
A388_02938	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A388_02939	PF07152	YaeQ protein
A388_02940	PF00375	Sodium:dicarboxylate symporter family
A388_02941	PF02492	CobW/HypB/UreG, nucleotide-binding domain
A388_02943	PF03061	Thioesterase superfamily
A388_02944	PF01914	A388_02944
A388_02945	PF02028	BCCT family transporter
A388_02946	PF02028	BCCT family transporter
A388_02947	PF00440	Bacterial regulatory proteins, tetR family
A388_02947	PF13977	Bacterial transcriptional repressor
A388_02948	PF00171	Aldehyde dehydrogenase family
A388_02949	PF00732	GMC oxidoreductase
A388_02949	PF05199	GMC oxidoreductase
A388_02950	PF06039	A388_02950
A388_02952	PF02574	Homocysteine S-methyltransferase
A388_02953	PF13520	Amino acid permease
A388_02954	PF12697	Alpha/beta hydrolase family
A388_02955	PF06912	A388_02955
A388_02957	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_02957	PF03466	LysR substrate binding domain
A388_02958	PF00701	Dihydrodipicolinate synthetase family
A388_02959	PF00083	Sugar (and other) transporter
A388_02960	PF03573	outer membrane porin, OprD family
A388_02964	PF01026	TatD related DNase
A388_02965	PF06508	Queuosine biosynthesis protein QueC
A388_02967	PF07693	A388_02967
A388_02970	PF04245	A388_02970
A388_02972	PF00436	Single-strand binding protein family
A388_02973	PF06048	A388_02973
A388_02978	PF02498	A388_02978
A388_02979	PF14090	A388_02979
A388_02982	PF00589	Phage integrase family
A388_02982	PF13356	Domain of unknown function (DUF4102)
A388_02984	PF01019	Gamma-glutamyltranspeptidase
A388_02985	PF07690	Major Facilitator Superfamily
A388_02986	PF00529	HlyD family secretion protein
A388_02986	PF16576	A388_02986
A388_02987	PF03061	Thioesterase superfamily
A388_02988	PF00490	Delta-aminolevulinic acid dehydratase
A388_02989	PF01266	FAD dependent oxidoreductase
A388_02990	PF01370	NAD dependent epimerase/dehydratase family
A388_02990	PF08338	Domain of unknown function (DUF1731)
A388_02993	PF02566	OsmC-like protein
A388_02994	PF00149	Calcineurin-like phosphoesterase
A388_02994	PF12320	Type 5 capsule protein repressor C-terminal domain
A388_02995	PF13476	AAA domain
A388_02995	PF13558	Putative exonuclease SbcCD, C subunit
A388_02996	PF01168	Alanine racemase, N-terminal domain
A388_02997	PF00437	Type II/IV secretion system protein
A388_02998	PF00437	Type II/IV secretion system protein
A388_02999	PF01475	Ferric uptake regulator family
A388_03000	PF04355	SmpA / OmlA family
A388_03001	PF03658	RnfH family Ubiquitin
A388_03003	PF01814	Hemerythrin HHE cation binding domain
A388_03004	PF13230	Glutamine amidotransferases class-II
A388_03005	PF13444	Acetyltransferase (GNAT) domain
A388_03006	PF00696	Amino acid kinase family
A388_03007	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A388_03007	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A388_03007	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A388_03008	PF00692	dUTPase
A388_03009	PF00580	UvrD/REP helicase N-terminal domain
A388_03009	PF13361	UvrD-like helicase C-terminal domain
A388_03010	PF00691	OmpA family
A388_03011	PF01553	Acyltransferase
A388_03013	PF03775	Septum formation inhibitor MinC, C-terminal domain
A388_03014	PF13614	AAA domain
A388_03015	PF03776	Septum formation topological specificity factor MinE
A388_03017	PF01810	A388_03017
A388_03018	PF01580	FtsK/SpoIIIE family
A388_03018	PF09397	Ftsk gamma domain
A388_03018	PF13491	A388_03018
A388_03019	PF07992	Pyridine nucleotide-disulphide oxidoreductase
A388_03020	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
A388_03021	PF04376	A388_03021
A388_03021	PF04377	A388_03021
A388_03022	PF00583	Acetyltransferase (GNAT) family
A388_03023	PF00182	Chitinase class I
A388_03023	PF10118	A388_03023
A388_03024	PF10118	A388_03024
A388_03025	PF00009	Elongation factor Tu GTP binding domain
A388_03025	PF03143	Elongation factor Tu C-terminal domain
A388_03025	PF03144	Elongation factor Tu domain 2
A388_03026	PF00009	Elongation factor Tu GTP binding domain
A388_03026	PF00679	Elongation factor G C-terminus
A388_03026	PF03144	Elongation factor Tu domain 2
A388_03026	PF03764	Elongation factor G, domain IV
A388_03026	PF14492	Elongation Factor G, domain II
A388_03027	PF00177	Ribosomal protein S7p/S5e
A388_03028	PF00164	Ribosomal protein S12/S23
A388_03029	PF12787	A388_03029
A388_03030	PF00109	Beta-ketoacyl synthase, N-terminal domain
A388_03030	PF02801	Beta-ketoacyl synthase, C-terminal domain
A388_03031	PF03653	A388_03031
A388_03032	PF02678	Pirin
A388_03032	PF05726	Pirin C-terminal cupin domain
A388_03034	PF00795	Carbon-nitrogen hydrolase
A388_03034	PF02540	NAD synthase
A388_03037	PF00111	2Fe-2S iron-sulfur cluster binding domain
A388_03037	PF00175	Oxidoreductase NAD-binding domain
A388_03037	PF00970	Oxidoreductase FAD-binding domain
A388_03038	PF00171	Aldehyde dehydrogenase family
A388_03039	PF00355	Rieske [2Fe-2S] domain
A388_03039	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
A388_03040	PF07859	alpha/beta hydrolase fold
A388_03041	PF02028	BCCT family transporter
A388_03042	PF00180	Isocitrate/isopropylmalate dehydrogenase
A388_03043	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03043	PF03466	LysR substrate binding domain
A388_03044	PF07396	Phosphate-selective porin O and P
A388_03046	PF00037	4Fe-4S binding domain
A388_03047	PF01467	Cytidylyltransferase
A388_03048	PF01668	SmpB protein
A388_03049	PF03358	NADPH-dependent FMN reductase
A388_03050	PF02578	Multi-copper polyphenol oxidoreductase laccase
A388_03051	PF00849	RNA pseudouridylate synthase
A388_03051	PF01479	S4 domain
A388_03052	PF13525	Outer membrane lipoprotein
A388_03053	PF01807	CHC2 zinc finger
A388_03053	PF08275	DNA primase catalytic core, N-terminal domain
A388_03053	PF10410	DnaB-helicase binding domain of primase
A388_03053	PF13662	Toprim domain
A388_03054	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
A388_03054	PF01488	Shikimate / quinate 5-dehydrogenase
A388_03054	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
A388_03055	PF13181	Tetratricopeptide repeat
A388_03055	PF13432	Tetratricopeptide repeat
A388_03055	PF14559	Tetratricopeptide repeat
A388_03056	PF03550	Outer membrane lipoprotein LolB
A388_03061	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
A388_03061	PF14572	Phosphoribosyl synthetase-associated domain
A388_03062	PF01386	Ribosomal L25p family
A388_03063	PF01195	Peptidyl-tRNA hydrolase
A388_03064	PF02261	Aspartate decarboxylase
A388_03065	PF14345	A388_03065
A388_03066	PF09925	A388_03066
A388_03066	PF14351	A388_03066
A388_03067	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
A388_03068	PF13419	Haloacid dehalogenase-like hydrolase
A388_03069	PF08543	Phosphomethylpyrimidine kinase
A388_03070	PF01476	LysM domain
A388_03070	PF04972	BON domain
A388_03071	PF00550	Phosphopantetheine attachment site
A388_03072	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_03073	PF00698	Acyl transferase domain
A388_03074	PF01783	Ribosomal L32p protein family
A388_03075	PF02620	A388_03075
A388_03076	PF04315	A388_03076
A388_03077	PF01300	Telomere recombination
A388_03078	PF02616	ScpA/B protein
A388_03079	PF04079	Putative transcriptional regulators (Ypuh-like)
A388_03080	PF00849	RNA pseudouridylate synthase
A388_03080	PF01479	S4 domain
A388_03081	PF13500	AAA domain
A388_03082	PF13489	Methyltransferase domain
A388_03083	PF00155	Aminotransferase class I and II
A388_03084	PF00202	Aminotransferase class-III
A388_03085	PF12697	Alpha/beta hydrolase family
A388_03086	PF02358	Trehalose-phosphatase
A388_03087	PF00982	Glycosyltransferase family 20
A388_03088	PF07690	Major Facilitator Superfamily
A388_03089	PF00210	Ferritin-like domain
A388_03090	PF00533	BRCA1 C Terminus (BRCT) domain
A388_03090	PF01653	NAD-dependent DNA ligase adenylation domain
A388_03090	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
A388_03090	PF03120	NAD-dependent DNA ligase OB-fold domain
A388_03090	PF12826	Helix-hairpin-helix motif
A388_03090	PF14520	Helix-hairpin-helix domain
A388_03091	PF04354	ZipA, C-terminal FtsZ-binding domain
A388_03092	PF02463	RecF/RecN/SMC N terminal domain
A388_03093	PF00392	Bacterial regulatory proteins, gntR family
A388_03093	PF07729	FCD domain
A388_03094	PF01925	A388_03094
A388_03095	PF03099	Biotin/lipoate A/B protein ligase family
A388_03096	PF03309	Type III pantothenate kinase
A388_03097	PF00448	SRP54-type protein, GTPase domain
A388_03097	PF02881	SRP54-type protein, helical bundle domain
A388_03097	PF02978	Signal peptide binding domain
A388_03098	PF01578	A388_03098
A388_03099	PF01207	Dihydrouridine synthase (Dus)
A388_03105	PF00692	dUTPase
A388_03106	PF01810	A388_03106
A388_03107	PF09835	A388_03107
A388_03108	PF01048	Phosphorylase superfamily
A388_03109	PF10609	ParA/MinD ATPase like
A388_03111	PF01588	Putative tRNA binding domain
A388_03111	PF08264	Anticodon-binding domain of tRNA
A388_03111	PF09334	tRNA synthetases class I (M)
A388_03113	PF01810	A388_03113
A388_03114	PF00440	Bacterial regulatory proteins, tetR family
A388_03115	PF07690	Major Facilitator Superfamily
A388_03116	PF13437	HlyD family secretion protein
A388_03116	PF13533	Biotin-lipoyl like
A388_03117	PF00291	Pyridoxal-phosphate dependent enzyme
A388_03118	PF03486	HI0933-like protein
A388_03120	PF05552	Conserved TM helix
A388_03123	PF00175	Oxidoreductase NAD-binding domain
A388_03123	PF00970	Oxidoreductase FAD-binding domain
A388_03124	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03124	PF03466	LysR substrate binding domain
A388_03125	PF05901	A388_03125
A388_03126	PF00313	'Cold-shock' DNA-binding domain
A388_03127	PF14681	Uracil phosphoribosyltransferase
A388_03128	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A388_03129	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A388_03130	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A388_03130	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
A388_03131	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
A388_03132	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
A388_03133	PF12838	4Fe-4S dicluster domain
A388_03134	PF00146	NADH dehydrogenase
A388_03135	PF00384	Molybdopterin oxidoreductase
A388_03135	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
A388_03135	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A388_03135	PF13510	2Fe-2S iron-sulfur cluster binding domain
A388_03136	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
A388_03136	PF10531	SLBB domain
A388_03136	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A388_03137	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
A388_03138	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
A388_03138	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
A388_03139	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
A388_03140	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
A388_03141	PF00990	GGDEF domain
A388_03143	PF00512	His Kinase A (phospho-acceptor) domain
A388_03143	PF00672	HAMP domain
A388_03143	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03144	PF00072	Response regulator receiver domain
A388_03144	PF00486	Transcriptional regulatory protein, C terminal
A388_03145	PF00317	Ribonucleotide reductase, all-alpha domain
A388_03145	PF02867	Ribonucleotide reductase, barrel domain
A388_03145	PF03477	ATP cone domain
A388_03147	PF00268	Ribonucleotide reductase, small chain
A388_03149	PF02567	Phenazine biosynthesis-like protein
A388_03150	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03150	PF03466	LysR substrate binding domain
A388_03151	PF13737	A388_03151
A388_03156	PF00440	Bacterial regulatory proteins, tetR family
A388_03157	PF01613	Flavin reductase like domain
A388_03158	PF01717	Cobalamin-independent synthase, Catalytic domain
A388_03159	PF08908	A388_03159
A388_03160	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03160	PF03466	LysR substrate binding domain
A388_03161	PF01810	A388_03161
A388_03163	PF12625	A388_03163
A388_03163	PF12833	Helix-turn-helix domain
A388_03164	PF01546	Peptidase family M20/M25/M40
A388_03164	PF07687	Peptidase dimerisation domain
A388_03166	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03166	PF03466	LysR substrate binding domain
A388_03167	PF07690	Major Facilitator Superfamily
A388_03168	PF13531	Bacterial extracellular solute-binding protein
A388_03169	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03169	PF03466	LysR substrate binding domain
A388_03170	PF00890	FAD binding domain
A388_03172	PF02515	CoA-transferase family III
A388_03173	PF07690	Major Facilitator Superfamily
A388_03174	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
A388_03174	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_03174	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_03175	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03175	PF03466	LysR substrate binding domain
A388_03176	PF00107	Zinc-binding dehydrogenase
A388_03176	PF08240	Alcohol dehydrogenase GroES-like domain
A388_03177	PF00962	Adenosine/AMP deaminase
A388_03182	PF02445	Quinolinate synthetase A protein
A388_03183	PF01960	ArgJ family
A388_03184	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
A388_03184	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
A388_03185	PF00893	Small Multidrug Resistance protein
A388_03186	PF01545	Cation efflux family
A388_03187	PF05275	A388_03187
A388_03188	PF00394	Multicopper oxidase
A388_03188	PF07731	Multicopper oxidase
A388_03188	PF07732	Multicopper oxidase
A388_03190	PF08282	haloacid dehalogenase-like hydrolase
A388_03191	PF00834	Ribulose-phosphate 3 epimerase family
A388_03192	PF09981	Uncharacterized protein conserved in bacteria (DUF2218)
A388_03193	PF00756	Putative esterase
A388_03194	PF01650	Peptidase C13 family
A388_03195	PF04445	Putative SAM-dependent methyltransferase
A388_03196	PF00814	Glycoprotease family
A388_03197	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_03198	PF00293	NUDIX domain
A388_03199	PF00293	NUDIX domain
A388_03199	PF14803	Nudix N-terminal
A388_03202	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
A388_03204	PF03412	Peptidase C39 family
A388_03206	PF00425	chorismate binding enzyme
A388_03206	PF04715	Anthranilate synthase component I, N terminal region
A388_03207	PF00155	Aminotransferase class I and II
A388_03208	PF00815	Histidinol dehydrogenase
A388_03209	PF01634	ATP phosphoribosyltransferase
A388_03210	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
A388_03211	PF01722	BolA-like protein
A388_03212	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
A388_03213	PF00309	A388_03213
A388_03213	PF04552	Sigma-54, DNA binding domain
A388_03213	PF04963	Sigma-54 factor, core binding domain
A388_03216	PF04333	A388_03216
A388_03217	PF07228	Stage II sporulation protein E (SpoIIE)
A388_03218	PF01740	STAS domain
A388_03219	PF00795	Carbon-nitrogen hydrolase
A388_03220	PF16309	A388_03220
A388_03221	PF01047	MarR family
A388_03222	PF02566	OsmC-like protein
A388_03223	PF00437	Type II/IV secretion system protein
A388_03225	PF00924	Mechanosensitive ion channel
A388_03226	PF10101	A388_03226
A388_03227	PF00476	DNA polymerase family A
A388_03227	PF01367	5'-3' exonuclease, C-terminal SAM fold
A388_03227	PF01612	3'-5' exonuclease
A388_03227	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
A388_03228	PF02325	A388_03228
A388_03229	PF03807	NADP oxidoreductase coenzyme F420-dependent
A388_03229	PF14748	Pyrroline-5-carboxylate reductase dimerisation
A388_03230	PF01171	PP-loop family
A388_03230	PF09179	TilS substrate binding domain
A388_03230	PF11734	TilS substrate C-terminal domain
A388_03231	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
A388_03232	PF01966	HD domain
A388_03232	PF02541	Ppx/GppA phosphatase family
A388_03233	PF00085	Thioredoxin
A388_03234	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
A388_03234	PF07497	Rho termination factor, RNA-binding domain
A388_03234	PF07498	Rho termination factor, N-terminal domain
A388_03236	PF00216	Bacterial DNA-binding protein
A388_03237	PF01588	Putative tRNA binding domain
A388_03237	PF03147	Ferredoxin-fold anticodon binding domain
A388_03237	PF03483	B3/4 domain
A388_03237	PF03484	tRNA synthetase B5 domain
A388_03238	PF01409	tRNA synthetases class II core domain (F)
A388_03238	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
A388_03241	PF00453	Ribosomal protein L20
A388_03242	PF01632	Ribosomal protein L35
A388_03243	PF05977	Transmembrane secretion effector
A388_03244	PF09335	A388_03244
A388_03245	PF00043	Glutathione S-transferase, C-terminal domain
A388_03245	PF02798	Glutathione S-transferase, N-terminal domain
A388_03246	PF00707	Translation initiation factor IF-3, C-terminal domain
A388_03247	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
A388_03247	PF02824	TGS domain
A388_03247	PF03129	Anticodon binding domain
A388_03247	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
A388_03248	PF00501	AMP-binding enzyme
A388_03248	PF13193	AMP-binding enzyme C-terminal domain
A388_03249	PF04751	Protein of unknown function (DUF615)
A388_03250	PF00381	PTS HPr component phosphorylation site
A388_03251	PF03668	A388_03251
A388_03252	PF02569	Pantoate-beta-alanine ligase
A388_03253	PF02548	Ketopantoate hydroxymethyltransferase
A388_03254	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
A388_03255	PF01743	Poly A polymerase head domain
A388_03255	PF12626	Polymerase A arginine-rich C-terminus
A388_03255	PF12627	Probable RNA and SrmB- binding site of polymerase A
A388_03256	PF12836	Helix-hairpin-helix motif
A388_03257	PF03819	MazG nucleotide pyrophosphohydrolase domain
A388_03258	PF00106	short chain dehydrogenase
A388_03259	PF02824	TGS domain
A388_03259	PF04607	Region found in RelA / SpoT proteins
A388_03259	PF13291	ACT domain
A388_03259	PF13328	HD domain
A388_03260	PF05958	tRNA (Uracil-5-)-methyltransferase
A388_03261	PF10108	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
A388_03262	PF00291	Pyridoxal-phosphate dependent enzyme
A388_03263	PF00072	Response regulator receiver domain
A388_03263	PF00512	His Kinase A (phospho-acceptor) domain
A388_03263	PF01627	Hpt domain
A388_03263	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03264	PF00378	Enoyl-CoA hydratase/isomerase family
A388_03265	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
A388_03265	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
A388_03266	PF01261	Xylose isomerase-like TIM barrel
A388_03267	PF02410	Oligomerisation domain
A388_03268	PF00106	short chain dehydrogenase
A388_03269	PF02233	NAD(P) transhydrogenase beta subunit
A388_03270	PF12769	Domain of unknown function (DUF3814)
A388_03271	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
A388_03271	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
A388_03272	PF00892	EamA-like transporter family
A388_03273	PF01042	Endoribonuclease L-PSP
A388_03274	PF07690	Major Facilitator Superfamily
A388_03276	PF01381	Helix-turn-helix
A388_03276	PF06114	Domain of unknown function (DUF955)
A388_03277	PF05275	A388_03277
A388_03278	PF00394	Multicopper oxidase
A388_03278	PF07731	Multicopper oxidase
A388_03278	PF07732	Multicopper oxidase
A388_03280	PF00072	Response regulator receiver domain
A388_03280	PF00486	Transcriptional regulatory protein, C terminal
A388_03281	PF00512	His Kinase A (phospho-acceptor) domain
A388_03281	PF00672	HAMP domain
A388_03281	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03282	PF00122	E1-E2 ATPase
A388_03282	PF00702	haloacid dehalogenase-like hydrolase
A388_03282	PF04945	YHS domain
A388_03283	PF04234	CopC domain
A388_03284	PF05425	A388_03284
A388_03285	PF06067	A388_03285
A388_03294	PF11726	A388_03294
A388_03296	PF11112	A388_03296
A388_03297	PF00589	Phage integrase family
A388_03298	PF01207	Dihydrouridine synthase (Dus)
A388_03300	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03300	PF03466	LysR substrate binding domain
A388_03301	PF00899	ThiF family
A388_03302	PF00330	Aconitase family (aconitate hydratase)
A388_03302	PF00694	Aconitase C-terminal domain
A388_03303	PF01026	TatD related DNase
A388_03304	PF11738	Protein of unknown function (DUF3298)
A388_03306	PF00009	Elongation factor Tu GTP binding domain
A388_03306	PF16658	A388_03306
A388_03308	PF00440	Bacterial regulatory proteins, tetR family
A388_03309	PF00440	Bacterial regulatory proteins, tetR family
A388_03310	PF00563	EAL domain
A388_03310	PF00990	GGDEF domain
A388_03311	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
A388_03311	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
A388_03312	PF10369	Small subunit of acetolactate synthase
A388_03312	PF13710	ACT domain
A388_03313	PF00205	Thiamine pyrophosphate enzyme, central domain
A388_03313	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
A388_03313	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
A388_03314	PF13511	A388_03314
A388_03315	PF00133	tRNA synthetases class I (I, L, M and V)
A388_03315	PF08264	Anticodon-binding domain of tRNA
A388_03315	PF09334	tRNA synthetases class I (M)
A388_03315	PF13603	Leucyl-tRNA synthetase, Domain 2
A388_03317	PF06144	DNA polymerase III, delta subunit
A388_03318	PF16576	A388_03318
A388_03319	PF00005	ABC transporter
A388_03319	PF02687	A388_03319
A388_03319	PF12704	MacB-like periplasmic core domain
A388_03320	PF02321	Outer membrane efflux protein
A388_03321	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_03322	PF12811	A388_03322
A388_03323	PF00929	Exonuclease
A388_03324	PF03193	Protein of unknown function, DUF258
A388_03325	PF00581	Rhodanese-like domain
A388_03326	PF00462	Glutaredoxin
A388_03327	PF02556	Preprotein translocase subunit SecB
A388_03328	PF01648	4'-phosphopantetheinyl transferase superfamily
A388_03329	PF01926	50S ribosome-binding GTPase
A388_03329	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
A388_03330	PF13360	PQQ-like domain
A388_03331	PF09976	Tetratricopeptide repeat
A388_03332	PF03129	Anticodon binding domain
A388_03332	PF13393	Histidyl-tRNA synthetase
A388_03333	PF04551	GcpE protein
A388_03334	PF13413	Helix-turn-helix domain
A388_03334	PF13464	A388_03334
A388_03335	PF13432	Tetratricopeptide repeat
A388_03336	PF04055	Radical SAM superfamily
A388_03337	PF00334	Nucleoside diphosphate kinase
A388_03338	PF04384	Iron-sulphur cluster assembly
A388_03339	PF01569	PAP2 superfamily
A388_03340	PF00534	Glycosyl transferases group 1
A388_03340	PF13439	Glycosyltransferase Family 4
A388_03341	PF00595	PDZ domain (Also known as DHR or GLGF)
A388_03341	PF03572	Peptidase family S41
A388_03341	PF11818	A388_03341
A388_03342	PF00933	Glycosyl hydrolase family 3 N terminal domain
A388_03343	PF04072	Leucine carboxyl methyltransferase
A388_03344	PF00561	alpha/beta hydrolase fold
A388_03345	PF00171	Aldehyde dehydrogenase family
A388_03346	PF00171	Aldehyde dehydrogenase family
A388_03347	PF01202	Shikimate kinase
A388_03348	PF02447	A388_03348
A388_03349	PF01081	KDPG and KHG aldolase
A388_03350	PF00920	Dehydratase family
A388_03351	PF00871	Acetokinase family
A388_03352	PF01515	Phosphate acetyl/butaryl transferase
A388_03352	PF07085	DRTGG domain
A388_03352	PF13500	AAA domain
A388_03353	PF05681	A388_03353
A388_03353	PF05683	Fumarase C-terminus
A388_03354	PF09832	Uncharacterized protein conserved in bacteria (DUF2059)
A388_03355	PF11008	A388_03355
A388_03356	PF06689	ClpX C4-type zinc finger
A388_03356	PF07724	AAA domain (Cdc48 subfamily)
A388_03356	PF10431	C-terminal, D2-small domain, of ClpB protein
A388_03357	PF00574	Clp protease
A388_03358	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
A388_03358	PF05697	Bacterial trigger factor protein (TF)
A388_03358	PF05698	Bacterial trigger factor protein (TF) C-terminus
A388_03359	PF00593	TonB dependent receptor
A388_03359	PF07715	TonB-dependent Receptor Plug Domain
A388_03360	PF13640	2OG-Fe(II) oxygenase superfamily
A388_03361	PF00682	HMGL-like
A388_03361	PF08502	LeuA allosteric (dimerisation) domain
A388_03362	PF00561	alpha/beta hydrolase fold
A388_03363	PF07021	Methionine biosynthesis protein MetW
A388_03364	PF08238	Sel1 repeat
A388_03365	PF01725	Ham1 family
A388_03367	PF02416	mttA/Hcf106 family
A388_03368	PF02416	mttA/Hcf106 family
A388_03369	PF00902	Sec-independent protein translocase protein (TatC)
A388_03370	PF05787	Bacterial protein of unknown function (DUF839)
A388_03371	PF05787	Bacterial protein of unknown function (DUF839)
A388_03372	PF05742	A388_03372
A388_03373	PF01790	A388_03373
A388_03376	PF00303	Thymidylate synthase
A388_03377	PF00186	Dihydrofolate reductase
A388_03378	PF13387	A388_03378
A388_03379	PF01625	Peptide methionine sulfoxide reductase
A388_03380	PF02472	Biopolymer transport protein ExbD/TolR
A388_03381	PF01618	A388_03381
A388_03382	PF03544	Gram-negative bacterial TonB protein C-terminal
A388_03383	PF00551	Formyl transferase
A388_03383	PF01842	ACT domain
A388_03384	PF00440	Bacterial regulatory proteins, tetR family
A388_03384	PF13972	Bacterial transcriptional repressor
A388_03385	PF00171	Aldehyde dehydrogenase family
A388_03386	PF00830	Ribosomal L28 family
A388_03387	PF00471	Ribosomal protein L33
A388_03388	PF00999	Sodium/hydrogen exchanger family
A388_03388	PF02254	TrkA-N domain
A388_03391	PF04266	ASCH domain
A388_03392	PF00076	RNA recognition motif
A388_03393	PF00580	UvrD/REP helicase N-terminal domain
A388_03393	PF13361	UvrD-like helicase C-terminal domain
A388_03394	PF03729	A388_03394
A388_03396	PF01131	DNA topoisomerase
A388_03396	PF01396	A388_03396
A388_03396	PF01751	Toprim domain
A388_03396	PF08272	Topoisomerase I zinc-ribbon-like
A388_03398	PF01638	HxlR-like helix-turn-helix
A388_03399	PF08240	Alcohol dehydrogenase GroES-like domain
A388_03399	PF13602	Zinc-binding dehydrogenase
A388_03400	PF04102	SlyX
A388_03401	PF00005	ABC transporter
A388_03401	PF12848	ABC transporter
A388_03401	PF16326	A388_03401
A388_03402	PF01810	A388_03402
A388_03403	PF03279	A388_03403
A388_03404	PF00534	Glycosyl transferases group 1
A388_03404	PF13439	Glycosyltransferase Family 4
A388_03405	PF00375	Sodium:dicarboxylate symporter family
A388_03406	PF03372	Endonuclease/Exonuclease/phosphatase family
A388_03407	PF01118	Semialdehyde dehydrogenase, NAD binding domain
A388_03407	PF02774	Semialdehyde dehydrogenase, dimerisation domain
A388_03410	PF00710	Asparaginase
A388_03411	PF01416	tRNA pseudouridine synthase
A388_03412	PF12625	A388_03412
A388_03412	PF12833	Helix-turn-helix domain
A388_03413	PF01176	Translation initiation factor 1A / IF-1
A388_03414	PF07007	Protein of unknown function (DUF1311)
A388_03416	PF00180	Isocitrate/isopropylmalate dehydrogenase
A388_03418	PF00694	Aconitase C-terminal domain
A388_03419	PF00330	Aconitase family (aconitate hydratase)
A388_03420	PF09834	A388_03420
A388_03421	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03421	PF03466	LysR substrate binding domain
A388_03422	PF12710	haloacid dehalogenase-like hydrolase
A388_03423	PF00293	NUDIX domain
A388_03424	PF00391	PEP-utilising enzyme, mobile domain
A388_03424	PF02896	PEP-utilising enzyme, TIM barrel domain
A388_03424	PF05524	PEP-utilising enzyme, N-terminal
A388_03424	PF13185	GAF domain
A388_03425	PF00141	Peroxidase
A388_03426	PF12706	Beta-lactamase superfamily domain
A388_03427	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03427	PF03466	LysR substrate binding domain
A388_03428	PF07077	A388_03428
A388_03429	PF02798	Glutathione S-transferase, N-terminal domain
A388_03429	PF14497	Glutathione S-transferase, C-terminal domain
A388_03430	PF08279	HTH domain
A388_03430	PF13280	A388_03430
A388_03431	PF13419	Haloacid dehalogenase-like hydrolase
A388_03432	PF00849	RNA pseudouridylate synthase
A388_03432	PF01479	S4 domain
A388_03433	PF00575	S1 RNA binding domain
A388_03433	PF10150	Ribonuclease E/G family
A388_03434	PF00501	AMP-binding enzyme
A388_03434	PF13193	AMP-binding enzyme C-terminal domain
A388_03437	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03437	PF03466	LysR substrate binding domain
A388_03438	PF13561	Enoyl-(Acyl carrier protein) reductase
A388_03439	PF04055	Radical SAM superfamily
A388_03439	PF06969	HemN C-terminal domain
A388_03440	PF04657	A388_03440
A388_03441	PF01554	MatE
A388_03442	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
A388_03443	PF02770	Acyl-CoA dehydrogenase, middle domain
A388_03443	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
A388_03443	PF08028	Acyl-CoA dehydrogenase, C-terminal domain
A388_03444	PF03109	A388_03444
A388_03445	PF01197	Ribosomal protein L31
A388_03446	PF08888	HopJ type III effector protein
A388_03447	PF02537	A388_03447
A388_03448	PF04828	Glutathione-dependent formaldehyde-activating enzyme
A388_03449	PF03486	HI0933-like protein
A388_03450	PF02390	Putative methyltransferase
A388_03451	PF03884	Domain of unknown function (DUF329)
A388_03452	PF00753	Metallo-beta-lactamase superfamily
A388_03453	PF00762	Ferrochelatase
A388_03454	PF13271	A388_03454
A388_03455	PF01177	Asp/Glu/Hydantoin racemase
A388_03456	PF06938	Protein of unknown function (DUF1285)
A388_03457	PF01946	Thi4 family
A388_03457	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
A388_03459	PF01206	Sulfurtransferase TusA
A388_03460	PF00571	CBS domain
A388_03460	PF03471	Transporter associated domain
A388_03461	PF00795	Carbon-nitrogen hydrolase
A388_03462	PF01588	Putative tRNA binding domain
A388_03464	PF07963	Prokaryotic N-terminal methylation motif
A388_03464	PF08334	Type II secretion system (T2SS), protein G
A388_03465	PF00482	Type II secretion system (T2SS), protein F
A388_03466	PF00271	Helicase conserved C-terminal domain
A388_03466	PF04851	Type III restriction enzyme, res subunit
A388_03467	PF00999	Sodium/hydrogen exchanger family
A388_03467	PF02254	TrkA-N domain
A388_03468	PF01430	Hsp33 protein
A388_03469	PF01810	A388_03469
A388_03470	PF00226	DnaJ domain
A388_03470	PF01556	DnaJ C terminal domain
A388_03471	PF13591	MerR HTH family regulatory protein
A388_03472	PF01544	CorA-like Mg2+ transporter protein
A388_03473	PF00013	KH domain
A388_03473	PF00575	S1 RNA binding domain
A388_03473	PF01138	3' exoribonuclease family, domain 1
A388_03473	PF03725	3' exoribonuclease family, domain 2
A388_03473	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
A388_03474	PF00312	Ribosomal protein S15
A388_03475	PF00144	Beta-lactamase
A388_03476	PF13538	UvrD-like helicase C-terminal domain
A388_03476	PF13604	AAA domain
A388_03477	PF00580	UvrD/REP helicase N-terminal domain
A388_03477	PF12705	PD-(D/E)XK nuclease superfamily
A388_03477	PF13361	UvrD-like helicase C-terminal domain
A388_03478	PF04257	Exodeoxyribonuclease V, gamma subunit
A388_03480	PF03976	Polyphosphate kinase 2 (PPK2)
A388_03482	PF01209	ubiE/COQ5 methyltransferase family
A388_03484	PF03109	A388_03484
A388_03485	PF01494	FAD binding domain
A388_03486	PF01502	Phosphoribosyl-AMP cyclohydrolase
A388_03486	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
A388_03487	PF13245	Part of AAA domain
A388_03487	PF13361	UvrD-like helicase C-terminal domain
A388_03488	PF13476	AAA domain
A388_03489	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A388_03489	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
A388_03489	PF04039	A388_03489
A388_03489	PF13244	A388_03489
A388_03490	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
A388_03491	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
A388_03492	PF01899	A388_03492
A388_03493	PF04066	A388_03493
A388_03494	PF03334	A388_03494
A388_03495	PF02033	Ribosome-binding factor A
A388_03496	PF00009	Elongation factor Tu GTP binding domain
A388_03496	PF04760	Translation initiation factor IF-2, N-terminal region
A388_03496	PF08364	A388_03496
A388_03496	PF11987	Translation-initiation factor 2
A388_03497	PF08529	NusA N-terminal domain
A388_03497	PF13184	NusA-like KH domain
A388_03497	PF14520	Helix-hairpin-helix domain
A388_03498	PF02576	Uncharacterised BCR, YhbC family COG0779
A388_03498	PF17384	A388_03498
A388_03502	PF03840	Preprotein translocase SecG subunit
A388_03503	PF00121	Triosephosphate isomerase
A388_03504	PF00437	Type II/IV secretion system protein
A388_03504	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
A388_03505	PF00482	Type II secretion system (T2SS), protein F
A388_03506	PF01478	Type IV leader peptidase family
A388_03506	PF06750	A388_03506
A388_03507	PF01121	Dephospho-CoA kinase
A388_03508	PF00892	EamA-like transporter family
A388_03509	PF00588	SpoU rRNA Methylase family
A388_03509	PF08032	RNA 2'-O ribose methyltransferase substrate binding
A388_03510	PF06865	Protein of unknown function (DUF1255)
A388_03512	PF02463	RecF/RecN/SMC N terminal domain
A388_03513	PF02622	Uncharacterized ACR, COG1678
A388_03514	PF03652	Uncharacterised protein family (UPF0081)
A388_03515	PF13437	HlyD family secretion protein
A388_03515	PF13533	Biotin-lipoyl like
A388_03516	PF07869	A388_03516
A388_03517	PF04632	A388_03517
A388_03518	PF13737	A388_03518
A388_03519	PF01614	Bacterial transcriptional regulator
A388_03520	PF13532	2OG-Fe(II) oxygenase superfamily
A388_03521	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
A388_03521	PF12833	Helix-turn-helix domain
A388_03522	PF01066	CDP-alcohol phosphatidyltransferase
A388_03523	PF13622	Thioesterase-like superfamily
A388_03524	PF01541	GIY-YIG catalytic domain
A388_03524	PF02151	UvrB/uvrC motif
A388_03524	PF08459	UvrC Helix-hairpin-helix N-terminal
A388_03524	PF14520	Helix-hairpin-helix domain
A388_03526	PF05118	Aspartyl/Asparaginyl beta-hydroxylase
A388_03528	PF00378	Enoyl-CoA hydratase/isomerase family
A388_03528	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
A388_03528	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
A388_03529	PF00108	Thiolase, N-terminal domain
A388_03529	PF02803	Thiolase, C-terminal domain
A388_03531	PF06821	Serine hydrolase
A388_03532	PF13411	MerR HTH family regulatory protein
A388_03534	PF01323	DSBA-like thioredoxin domain
A388_03537	PF00183	Hsp90 protein
A388_03537	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03538	PF07007	Protein of unknown function (DUF1311)
A388_03539	PF03922	OmpW family
A388_03540	PF03553	A388_03540
A388_03540	PF13726	A388_03540
A388_03541	PF00561	alpha/beta hydrolase fold
A388_03542	PF14539	Domain of unknown function (DUF4442)
A388_03543	PF13441	A388_03543
A388_03545	PF00623	RNA polymerase Rpb1, domain 2
A388_03545	PF04983	RNA polymerase Rpb1, domain 3
A388_03545	PF04997	RNA polymerase Rpb1, domain 1
A388_03545	PF04998	RNA polymerase Rpb1, domain 5
A388_03545	PF05000	RNA polymerase Rpb1, domain 4
A388_03546	PF00562	RNA polymerase Rpb2, domain 6
A388_03546	PF04560	RNA polymerase Rpb2, domain 7
A388_03546	PF04561	RNA polymerase Rpb2, domain 2
A388_03546	PF04563	RNA polymerase beta subunit
A388_03546	PF04565	RNA polymerase Rpb2, domain 3
A388_03546	PF10385	RNA polymerase beta subunit external 1 domain
A388_03547	PF00542	Ribosomal protein L7/L12 C-terminal domain
A388_03547	PF16320	A388_03547
A388_03548	PF00466	Ribosomal protein L10
A388_03549	PF00687	Ribosomal protein L1p/L10e family
A388_03550	PF00298	Ribosomal protein L11, RNA binding domain
A388_03550	PF03946	Ribosomal protein L11, N-terminal domain
A388_03551	PF02357	Transcription termination factor nusG
A388_03552	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
A388_03554	PF00009	Elongation factor Tu GTP binding domain
A388_03554	PF03143	Elongation factor Tu C-terminal domain
A388_03554	PF03144	Elongation factor Tu domain 2
A388_03559	PF00425	chorismate binding enzyme
A388_03559	PF04715	Anthranilate synthase component I, N terminal region
A388_03560	PF13419	Haloacid dehalogenase-like hydrolase
A388_03561	PF00498	FHA domain
A388_03562	PF00263	A388_03562
A388_03562	PF03958	Bacterial type II/III secretion system short domain
A388_03563	PF11356	Type IV pilus biogenesis
A388_03564	PF01203	A388_03564
A388_03565	PF00816	H-NS histone family
A388_03566	PF13279	Thioesterase-like superfamily
A388_03569	PF02602	Uroporphyrinogen-III synthase HemD
A388_03570	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
A388_03570	PF03900	Porphobilinogen deaminase, C-terminal domain
A388_03571	PF00072	Response regulator receiver domain
A388_03571	PF04397	LytTr DNA-binding domain
A388_03572	PF06580	A388_03572
A388_03573	PF00206	Lyase
A388_03573	PF14698	Argininosuccinate lyase C-terminal
A388_03574	PF04362	Bacterial Fe(2+) trafficking
A388_03575	PF01895	PhoU domain
A388_03576	PF02321	Outer membrane efflux protein
A388_03577	PF00892	EamA-like transporter family
A388_03578	PF00440	Bacterial regulatory proteins, tetR family
A388_03580	PF01964	ThiC family
A388_03580	PF13667	ThiC-associated domain
A388_03581	PF00293	NUDIX domain
A388_03582	PF00149	Calcineurin-like phosphoesterase
A388_03583	PF01258	Prokaryotic dksA/traR C4-type zinc finger
A388_03584	PF00749	tRNA synthetases class I (E and Q), catalytic domain
A388_03585	PF01098	A388_03585
A388_03586	PF02875	Mur ligase family, glutamate ligase domain
A388_03586	PF08245	Mur ligase middle domain
A388_03588	PF02421	Ferrous iron transport protein B
A388_03588	PF07664	A388_03588
A388_03588	PF07670	Nucleoside recognition
A388_03589	PF04023	FeoA domain
A388_03590	PF00589	Phage integrase family
A388_03590	PF02899	Phage integrase, N-terminal SAM-like domain
A388_03591	PF10411	Disulfide bond isomerase protein N-terminus
A388_03591	PF13098	Thioredoxin-like domain
A388_03592	PF00742	Homoserine dehydrogenase
A388_03592	PF01842	ACT domain
A388_03592	PF03447	Homoserine dehydrogenase, NAD binding domain
A388_03593	PF00291	Pyridoxal-phosphate dependent enzyme
A388_03594	PF00768	D-alanyl-D-alanine carboxypeptidase
A388_03595	PF00072	Response regulator receiver domain
A388_03595	PF00196	Bacterial regulatory proteins, luxR family
A388_03596	PF00512	His Kinase A (phospho-acceptor) domain
A388_03596	PF00989	PAS fold
A388_03596	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03597	PF00072	Response regulator receiver domain
A388_03597	PF00158	Sigma-54 interaction domain
A388_03597	PF02954	Bacterial regulatory protein, Fis family
A388_03598	PF03572	Peptidase family S41
A388_03599	PF01676	Metalloenzyme superfamily
A388_03599	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
A388_03600	PF03739	A388_03600
A388_03601	PF03739	A388_03601
A388_03602	PF00883	Cytosol aminopeptidase family, catalytic domain
A388_03602	PF02789	Cytosol aminopeptidase family, N-terminal domain
A388_03603	PF04364	DNA polymerase III chi subunit, HolC
A388_03606	PF00677	Lumazine binding domain
A388_03607	PF02086	D12 class N6 adenine-specific DNA methyltransferase
A388_03608	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
A388_03608	PF01872	RibD C-terminal domain
A388_03609	PF03477	ATP cone domain
A388_03610	PF00909	Ammonium Transporter Family
A388_03611	PF00543	Nitrogen regulatory protein P-II
A388_03612	PF04380	A388_03612
A388_03613	PF05052	A388_03613
A388_03615	PF00916	A388_03615
A388_03615	PF01740	STAS domain
A388_03617	PF01610	A388_03617
A388_03617	PF13542	A388_03617
A388_03617	PF14690	A388_03617
A388_03618	PF01252	A388_03618
A388_03619	PF01545	Cation efflux family
A388_03620	PF13411	MerR HTH family regulatory protein
A388_03621	PF03743	Bacterial conjugation TrbI-like protein
A388_03622	PF00239	Resolvase, N terminal domain
A388_03625	PF00809	Pterin binding enzyme
A388_03626	PF00893	Small Multidrug Resistance protein
A388_03627	PF01909	Nucleotidyltransferase domain
A388_03627	PF13427	A388_03627
A388_03628	PF13673	Acetyltransferase (GNAT) domain
A388_03629	PF00583	Acetyltransferase (GNAT) family
A388_03630	PF13523	Acetyltransferase (GNAT) domain
A388_03631	PF00589	Phage integrase family
A388_03631	PF13495	Phage integrase, N-terminal SAM-like domain
A388_03632	PF13610	A388_03632
A388_03633	PF01636	Phosphotransferase enzyme family
A388_03634	PF13610	A388_03634
A388_03635	PF01593	Flavin containing amine oxidoreductase
A388_03636	PF02678	Pirin
A388_03636	PF05726	Pirin C-terminal cupin domain
A388_03637	PF00857	Isochorismatase family
A388_03638	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03638	PF03466	LysR substrate binding domain
A388_03639	PF00171	Aldehyde dehydrogenase family
A388_03640	PF00202	Aminotransferase class-III
A388_03641	PF00155	Aminotransferase class I and II
A388_03641	PF00392	Bacterial regulatory proteins, gntR family
A388_03642	PF00324	Amino acid permease
A388_03643	PF01381	Helix-turn-helix
A388_03643	PF07883	Cupin domain
A388_03644	PF03591	A388_03644
A388_03645	PF05437	A388_03645
A388_03646	PF00436	Single-strand binding protein family
A388_03647	PF07690	Major Facilitator Superfamily
A388_03648	PF04332	A388_03648
A388_03649	PF03070	TENA/THI-4/PQQC family
A388_03650	PF06942	A388_03650
A388_03651	PF06993	A388_03651
A388_03652	PF00107	Zinc-binding dehydrogenase
A388_03652	PF08240	Alcohol dehydrogenase GroES-like domain
A388_03653	PF00440	Bacterial regulatory proteins, tetR family
A388_03653	PF16925	A388_03653
A388_03654	PF00005	ABC transporter
A388_03655	PF00990	GGDEF domain
A388_03656	PF16956	A388_03656
A388_03657	PF02028	BCCT family transporter
A388_03658	PF07885	Ion channel
A388_03659	PF00474	Sodium:solute symporter family
A388_03660	PF04341	A388_03660
A388_03661	PF00072	Response regulator receiver domain
A388_03661	PF00512	His Kinase A (phospho-acceptor) domain
A388_03661	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03661	PF12860	A388_03661
A388_03663	PF00072	Response regulator receiver domain
A388_03663	PF00196	Bacterial regulatory proteins, luxR family
A388_03664	PF03358	NADPH-dependent FMN reductase
A388_03665	PF00296	Luciferase-like monooxygenase
A388_03666	PF13412	Winged helix-turn-helix DNA-binding
A388_03667	PF00857	Isochorismatase family
A388_03668	PF00501	AMP-binding enzyme
A388_03668	PF13193	AMP-binding enzyme C-terminal domain
A388_03668	PF16177	A388_03668
A388_03669	PF05656	A388_03669
A388_03670	PF00924	Mechanosensitive ion channel
A388_03671	PF04452	RNA methyltransferase
A388_03672	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
A388_03673	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
A388_03674	PF12840	Helix-turn-helix domain
A388_03676	PF00472	RF-1 domain
A388_03676	PF03462	PCRF domain
A388_03677	PF16956	A388_03677
A388_03678	PF01368	DHH family
A388_03678	PF02272	DHHA1 domain
A388_03679	PF01243	Pyridoxamine 5'-phosphate oxidase
A388_03679	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
A388_03680	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
A388_03680	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A388_03680	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A388_03680	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
A388_03681	PF00478	IMP dehydrogenase / GMP reductase domain
A388_03681	PF00571	CBS domain
A388_03682	PF03692	A388_03682
A388_03683	PF00753	Metallo-beta-lactamase superfamily
A388_03684	PF00593	TonB dependent receptor
A388_03684	PF07715	TonB-dependent Receptor Plug Domain
A388_03685	PF01169	A388_03685
A388_03687	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
A388_03687	PF00364	Biotin-requiring enzyme
A388_03687	PF02817	e3 binding domain
A388_03688	PF00456	Transketolase, thiamine diphosphate binding domain
A388_03689	PF01551	Peptidase family M23
A388_03690	PF05258	A388_03690
A388_03691	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
A388_03692	PF00091	Tubulin/FtsZ family, GTPase domain
A388_03692	PF12327	FtsZ family, C-terminal domain
A388_03693	PF02491	SHS2 domain inserted in FTSA
A388_03693	PF14450	Cell division protein FtsA
A388_03694	PF03799	Cell division protein FtsQ
A388_03694	PF08478	POTRA domain, FtsQ-type
A388_03695	PF01820	D-ala D-ala ligase N-terminus
A388_03695	PF07478	D-ala D-ala ligase C-terminus
A388_03696	PF01225	Mur ligase family, catalytic domain
A388_03696	PF02875	Mur ligase family, glutamate ligase domain
A388_03696	PF08245	Mur ligase middle domain
A388_03697	PF03033	Glycosyltransferase family 28 N-terminal domain
A388_03697	PF04101	Glycosyltransferase family 28 C-terminal domain
A388_03698	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
A388_03698	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
A388_03699	PF08410	A388_03699
A388_03700	PF00593	TonB dependent receptor
A388_03700	PF07715	TonB-dependent Receptor Plug Domain
A388_03701	PF00156	Phosphoribosyl transferase domain
A388_03702	PF03372	Endonuclease/Exonuclease/phosphatase family
A388_03703	PF03960	ArsC family
A388_03704	PF09917	Uncharacterized protein conserved in bacteria (DUF2147)
A388_03705	PF07859	alpha/beta hydrolase fold
A388_03706	PF00990	GGDEF domain
A388_03707	PF00085	Thioredoxin
A388_03707	PF02683	A388_03707
A388_03707	PF11412	Disulphide bond corrector protein DsbC
A388_03708	PF13557	A388_03708
A388_03710	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
A388_03711	PF01522	Polysaccharide deacetylase
A388_03712	PF09349	OHCU decarboxylase
A388_03713	PF00576	HIUase/Transthyretin family
A388_03714	PF00860	Permease family
A388_03715	PF03502	Nucleoside-specific channel-forming protein, Tsx
A388_03716	PF01494	FAD binding domain
A388_03717	PF03561	Allantoicase repeat
A388_03718	PF04115	Ureidoglycolate hydrolase
A388_03719	PF00204	DNA gyrase B
A388_03719	PF00986	DNA gyrase B subunit, carboxyl terminus
A388_03719	PF01751	Toprim domain
A388_03719	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03720	PF05728	Uncharacterised protein family (UPF0227)
A388_03721	PF07819	PGAP1-like protein
A388_03723	PF07007	Protein of unknown function (DUF1311)
A388_03726	PF01476	LysM domain
A388_03727	PF05954	Phage late control gene D protein (GPD)
A388_03727	PF10106	A388_03727
A388_03727	PF13296	A388_03727
A388_03728	PF02600	Disulfide bond formation protein DsbB
A388_03729	PF04262	Glutamate-cysteine ligase
A388_03730	PF06041	Bacterial protein of unknown function (DUF924)
A388_03732	PF04286	A388_03732
A388_03733	PF00155	Aminotransferase class I and II
A388_03734	PF01554	MatE
A388_03735	PF00106	short chain dehydrogenase
A388_03737	PF00072	Response regulator receiver domain
A388_03737	PF00486	Transcriptional regulatory protein, C terminal
A388_03738	PF00512	His Kinase A (phospho-acceptor) domain
A388_03738	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03738	PF11808	A388_03738
A388_03738	PF13188	PAS domain
A388_03739	PF12146	Putative lysophospholipase
A388_03740	PF02666	A388_03740
A388_03741	PF00581	Rhodanese-like domain
A388_03742	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
A388_03743	PF02580	D-Tyr-tRNA(Tyr) deacylase
A388_03746	PF12710	haloacid dehalogenase-like hydrolase
A388_03746	PF13740	ACT domain
A388_03748	PF00925	GTP cyclohydrolase II
A388_03748	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
A388_03749	PF00885	6,7-dimethyl-8-ribityllumazine synthase
A388_03750	PF01029	NusB family
A388_03751	PF00586	AIR synthase related protein, N-terminal domain
A388_03751	PF02769	AIR synthase related protein, C-terminal domain
A388_03752	PF04608	Phosphatidylglycerophosphatase A
A388_03753	PF00132	Bacterial transferase hexapeptide (six repeats)
A388_03753	PF12804	MobA-like NTP transferase domain
A388_03753	PF14602	Hexapeptide repeat of succinyl-transferase
A388_03754	PF01380	SIS domain
A388_03754	PF13522	Glutamine amidotransferase domain
A388_03756	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03756	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
A388_03757	PF00145	C-5 cytosine-specific DNA methylase
A388_03759	PF01177	Asp/Glu/Hydantoin racemase
A388_03760	PF13419	Haloacid dehalogenase-like hydrolase
A388_03761	PF05960	Bacterial protein of unknown function (DUF885)
A388_03762	PF00491	Arginase family
A388_03763	PF01979	Amidohydrolase family
A388_03764	PF00324	Amino acid permease
A388_03765	PF00221	Aromatic amino acid lyase
A388_03766	PF01175	Urocanase
A388_03766	PF17391	A388_03766
A388_03766	PF17392	A388_03766
A388_03767	PF05962	HutD
A388_03768	PF00392	Bacterial regulatory proteins, gntR family
A388_03768	PF07702	UTRA domain
A388_03769	PF01757	A388_03769
A388_03770	PF02492	CobW/HypB/UreG, nucleotide-binding domain
A388_03770	PF07683	Cobalamin synthesis protein cobW C-terminal domain
A388_03771	PF08291	Peptidase M15
A388_03772	PF00324	Amino acid permease
A388_03773	PF01557	Fumarylacetoacetate (FAA) hydrolase family
A388_03773	PF09298	Fumarylacetoacetase N-terminal
A388_03774	PF02798	Glutathione S-transferase, N-terminal domain
A388_03774	PF14497	Glutathione S-transferase, C-terminal domain
A388_03775	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
A388_03776	PF01614	Bacterial transcriptional regulator
A388_03776	PF09339	IclR helix-turn-helix domain
A388_03777	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
A388_03777	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
A388_03778	PF04463	A388_03778
A388_03779	PF01554	MatE
A388_03780	PF01758	Sodium Bile acid symporter family
A388_03781	PF00857	Isochorismatase family
A388_03782	PF00701	Dihydrodipicolinate synthetase family
A388_03784	PF01259	SAICAR synthetase
A388_03786	PF01226	Formate/nitrite transporter
A388_03787	PF00004	ATPase family associated with various cellular activities (AAA)
A388_03787	PF12002	MgsA AAA+ ATPase C terminal
A388_03787	PF16193	A388_03787
A388_03788	PF07995	Glucose / Sorbosone dehydrogenase
A388_03789	PF03692	A388_03789
A388_03790	PF07043	A388_03790
A388_03791	PF01738	Dienelactone hydrolase family
A388_03792	PF01230	HIT domain
A388_03793	PF00633	Helix-hairpin-helix motif
A388_03793	PF00730	HhH-GPD superfamily base excision DNA repair protein
A388_03793	PF14815	NUDIX domain
A388_03794	PF01551	Peptidase family M23
A388_03796	PF03352	Methyladenine glycosylase
A388_03797	PF00107	Zinc-binding dehydrogenase
A388_03797	PF08240	Alcohol dehydrogenase GroES-like domain
A388_03798	PF00155	Aminotransferase class I and II
A388_03798	PF00392	Bacterial regulatory proteins, gntR family
A388_03800	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03800	PF03466	LysR substrate binding domain
A388_03801	PF00248	Aldo/keto reductase family
A388_03802	PF07690	Major Facilitator Superfamily
A388_03803	PF01852	START domain
A388_03804	PF01113	Dihydrodipicolinate reductase, N-terminus
A388_03804	PF05173	Dihydrodipicolinate reductase, C-terminus
A388_03806	PF00226	DnaJ domain
A388_03806	PF00684	DnaJ central domain
A388_03806	PF01556	DnaJ C terminal domain
A388_03808	PF00873	AcrB/AcrD/AcrF family
A388_03809	PF16576	A388_03809
A388_03810	PF00440	Bacterial regulatory proteins, tetR family
A388_03810	PF14246	AefR-like transcriptional repressor, C-terminal region
A388_03811	PF00311	Phosphoenolpyruvate carboxylase
A388_03812	PF00860	Permease family
A388_03813	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
A388_03813	PF03466	LysR substrate binding domain
A388_03814	PF01925	A388_03814
A388_03816	PF00920	Dehydratase family
A388_03817	PF00551	Formyl transferase
A388_03817	PF02911	Formyl transferase, C-terminal domain
A388_03818	PF01029	NusB family
A388_03818	PF01189	NOL1/NOP2/sun family
A388_03818	PF17125	A388_03818
A388_03819	PF16951	A388_03819
A388_03820	PF00209	Sodium:neurotransmitter symporter family
A388_03822	PF00043	Glutathione S-transferase, C-terminal domain
A388_03822	PF13417	Glutathione S-transferase, N-terminal domain
A388_p00001	PF01051	Initiator Replication protein
A388_p00005	PF13610	A388_p00005
A388_p00006	PF01636	Phosphotransferase enzyme family
A388_p00007	PF13610	A388_p00007
A388_p00008	PF02311	AraC-like ligand binding domain
A388_p00010	PF03400	A388_p00010
A388_p00010	PF03811	A388_p00010
A388_p00011	PF00905	Penicillin binding protein transpeptidase domain
A388_p00012	PF00665	Integrase core domain
A388_p00012	PF13276	A388_p00012
A388_p00015	PF08238	Sel1 repeat
A388_p00016	PF00239	Resolvase, N terminal domain
A388_p00017	PF00665	Integrase core domain
A388_p00018	PF13276	A388_p00018
A388_p00019	PF05016	Plasmid stabilisation system protein
A388_p00020	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
A388_p00023	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
A388_p00024	PF01051	Initiator Replication protein
A388_p00025	PF11867	A388_p00025
A388_p00026	PF02399	A388_p00026
A388_p00027	PF13957	A388_p00027
A388_p00029	PF01381	Helix-turn-helix
A388_p00030	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
A388_p00031	PF02384	N-6 DNA Methylase
A388_p00031	PF12161	HsdM N-terminal domain
A388_p00032	PF01420	Type I restriction modification DNA specificity domain
A388_p00033	PF13610	A388_p00033
A388_p00034	PF04365	Protein of unknown function (DUF497)
A388_p00035	PF14384	A388_p00035
A388_p00036	PF00593	TonB dependent receptor
A388_p00036	PF07715	TonB-dependent Receptor Plug Domain