A388_00008 SM00382 ATPases associated with a variety of cellular activities A388_00011 SM00387 Histidine kinase-like ATPases A388_00011 SM00433 TopoisomeraseII A388_00013 SM00480 DNA polymerase III beta subunit A388_00014 SM00382 ATPases associated with a variety of cellular activities A388_00014 SM00760 Bacterial dnaA protein helix-turn-helix domain A388_00017 SM01234 A388_00017 A388_00031 SM00014 Acid phosphatase homologues A388_00035 SM01001 AIR carboxylase A388_00039 SM00235 Zinc-dependent metalloprotease A388_00040 SM00235 Zinc-dependent metalloprotease A388_00044 SM00849 Metallo-beta-lactamase superfamily A388_00051 SM00248 ankyrin repeats A388_00056 SM00904 Riboflavin kinase A388_00060 SM00382 ATPases associated with a variety of cellular activities A388_00063 SM00062 Bacterial periplasmic substrate-binding proteins A388_00064 SM00062 Bacterial periplasmic substrate-binding proteins A388_00080 SM00644 A388_00080 A388_00085 SM00226 Low molecular weight phosphatase family A388_00087 SM00984 UDP binding domain A388_00093 SM00984 UDP binding domain A388_00100 SM00984 UDP binding domain A388_00108 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_00108 SM00895 A388_00108 A388_00112 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_00112 SM00895 A388_00112 A388_00128 SM00344 helix_turn_helix ASNC type A388_00130 SM01005 Alanine racemase, C-terminal domain A388_00142 SM00421 helix_turn_helix, Lux Regulon A388_00163 SM00836 DALR anticodon binding domain A388_00163 SM01016 Arginyl tRNA synthetase N terminal dom A388_00164 SM00919 Malic enzyme, NAD binding domain A388_00164 SM01274 A388_00164 A388_00168 SM00382 ATPases associated with a variety of cellular activities A388_00178 SM00382 ATPases associated with a variety of cellular activities A388_00182 SM00342 helix_turn_helix, arabinose operon control protein A388_00202 SM00422 helix_turn_helix, mercury resistance A388_00204 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_00208 SM00641 Glycosyl hydrolases family 25 A388_00211 SM01091 Transporter associated domain A388_00215 SM00434 DNA Topoisomerase IV A388_00223 SM01130 A388_00223 A388_00224 SM01007 Class II Aldolase and Adducin N-terminal domain A388_00225 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_00229 SM00382 ATPases associated with a variety of cellular activities A388_00236 SM00226 Low molecular weight phosphatase family A388_00237 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A388_00240 SM00422 helix_turn_helix, mercury resistance A388_00245 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain A388_00245 SM00437 Bacterial DNA topoisomerase I DNA-binding domain A388_00245 SM00493 A388_00245 A388_00253 SM00422 helix_turn_helix, mercury resistance A388_00257 SM00422 helix_turn_helix, mercury resistance A388_00262 SM01059 Chloramphenicol acetyltransferase A388_00265 SM00857 Resolvase, N terminal domain A388_00268 SM00857 Resolvase, N terminal domain A388_00281 SM00342 helix_turn_helix, arabinose operon control protein A388_00289 SM00342 helix_turn_helix, arabinose operon control protein A388_00294 SM00477 DNA/RNA non-specific endonuclease A388_00294 SM00892 DNA/RNA non-specific endonuclease A388_00298 SM00342 helix_turn_helix, arabinose operon control protein A388_00302 SM00357 Cold shock protein domain A388_00305 SM00530 Helix-turn-helix XRE-family like proteins A388_00307 SM00474 3'-5' exonuclease A388_00316 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A388_00316 SM00387 Histidine kinase-like ATPases A388_00316 SM00388 His Kinase A (phosphoacceptor) domain A388_00317 SM00448 cheY-homologous receiver domain A388_00317 SM00862 Transcriptional regulatory protein, C terminal A388_00318 SM00316 Ribosomal protein S1-like RNA-binding domain A388_00318 SM00732 Likely ribonuclease with RNase H fold. A388_00319 SM00947 Carbonic anhydrase A388_00322 SM00382 ATPases associated with a variety of cellular activities A388_00350 SM00842 Cell division protein FtsA A388_00354 SM00965 Secretin and TonB N terminus short domain A388_00369 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A388_00369 SM00954 Region found in RelA / SpoT proteins A388_00370 SM01409 A388_00370 A388_00371 SM00072 Guanylate kinase homologues. A388_00408 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A388_00429 SM00116 Domain in cystathionine beta-synthase and other proteins. A388_00437 SM00861 Transketolase, pyrimidine binding domain A388_00439 SM00487 DEAD-like helicases superfamily A388_00439 SM00490 helicase superfamily c-terminal domain A388_00441 SM00382 ATPases associated with a variety of cellular activities A388_00450 SM00487 DEAD-like helicases superfamily A388_00450 SM00490 helicase superfamily c-terminal domain A388_00453 SM00563 Phosphate acyltransferases A388_00463 SM01403 A388_00463 A388_00467 SM01382 A388_00467 A388_00467 SM01383 A388_00467 A388_00470 SM00322 K homology RNA-binding domain A388_00474 SM01374 A388_00474 A388_00475 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A388_00488 SM00363 S4 RNA-binding domain A388_00488 SM01390 A388_00488 A388_00489 SM00662 RNA polymerases D A388_00502 SM00316 Ribosomal protein S1-like RNA-binding domain A388_00502 SM00955 A388_00502 A388_00513 SM00342 helix_turn_helix, arabinose operon control protein A388_00523 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_00529 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. A388_00544 SM00878 Biotin carboxylase C-terminal domain A388_00551 SM00650 Ribosomal RNA adenine dimethylases A388_00557 SM00563 Phosphate acyltransferases A388_00558 SM00155 Phospholipase D. Active site motifs. A388_00561 SM00267 diguanylate cyclase A388_00573 SM00450 Rhodanese Homology Domain A388_00578 SM00481 DNA polymerase alpha chain like domain A388_00584 SM01323 A388_00584 A388_00593 SM00479 A388_00593 A388_00601 SM00530 Helix-turn-helix XRE-family like proteins A388_00629 SM00028 Tetratricopeptide repeats A388_00634 SM00387 Histidine kinase-like ATPases A388_00634 SM00388 His Kinase A (phosphoacceptor) domain A388_00657 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A388_00657 SM00387 Histidine kinase-like ATPases A388_00657 SM00388 His Kinase A (phosphoacceptor) domain A388_00658 SM00448 cheY-homologous receiver domain A388_00658 SM00862 Transcriptional regulatory protein, C terminal A388_00670 SM00342 helix_turn_helix, arabinose operon control protein A388_00676 SM00849 Metallo-beta-lactamase superfamily A388_00678 SM00957 SecA DEAD-like domain A388_00678 SM00958 SecA preprotein cross-linking domain A388_00688 SM00342 helix_turn_helix, arabinose operon control protein A388_00691 SM00564 beta-propeller repeat A388_00704 SM00838 Elongation factor G C-terminus A388_00708 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain A388_00708 SM01232 A388_00708 A388_00713 SM00671 Sel1-like repeats. A388_00724 SM00448 cheY-homologous receiver domain A388_00725 SM00448 cheY-homologous receiver domain A388_00726 SM00260 Two component signalling adaptor domain A388_00727 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). A388_00728 SM00073 Histidine Phosphotransfer domain A388_00728 SM00260 Two component signalling adaptor domain A388_00728 SM00387 Histidine kinase-like ATPases A388_00728 SM00448 cheY-homologous receiver domain A388_00728 SM01231 A388_00728 A388_00730 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_00758 SM00845 GatB domain A388_00765 SM00316 Ribosomal protein S1-like RNA-binding domain A388_00772 SM00342 helix_turn_helix, arabinose operon control protein A388_00776 SM00342 helix_turn_helix, arabinose operon control protein A388_00777 SM00829 Enoylreductase A388_00796 SM00382 ATPases associated with a variety of cellular activities A388_00858 SM00244 prohibitin homologues A388_00861 SM00563 Phosphate acyltransferases A388_00865 SM00448 cheY-homologous receiver domain A388_00865 SM00862 Transcriptional regulatory protein, C terminal A388_00866 SM00387 Histidine kinase-like ATPases A388_00866 SM00388 His Kinase A (phosphoacceptor) domain A388_00875 SM00822 A388_00875 A388_00884 SM00014 Acid phosphatase homologues A388_00904 SM00450 Rhodanese Homology Domain A388_00911 SM00861 Transketolase, pyrimidine binding domain A388_00915 SM00881 CoA binding domain A388_00925 SM00854 Bacterial capsule synthesis protein PGA_cap A388_00931 SM00851 MGS-like domain A388_00931 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain A388_00932 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain A388_00935 SM01103 A388_00935 A388_00937 SM00382 ATPases associated with a variety of cellular activities A388_00952 SM00046 Diacylglycerol kinase catalytic domain (presumed) A388_00955 SM00883 Chaperonin 10 Kd subunit A388_00958 SM00849 Metallo-beta-lactamase superfamily A388_00988 SM00978 A388_00988 A388_00989 SM00382 ATPases associated with a variety of cellular activities A388_00997 SM00893 Electron transfer flavoprotein domain A388_00998 SM00893 Electron transfer flavoprotein domain A388_00999 SM00434 DNA Topoisomerase IV A388_01014 SM00382 ATPases associated with a variety of cellular activities A388_01015 SM00849 Metallo-beta-lactamase superfamily A388_01038 SM00382 ATPases associated with a variety of cellular activities A388_01039 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A388_01040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A388_01041 SM01211 A388_01041 A388_01055 SM00382 ATPases associated with a variety of cellular activities A388_01065 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A388_01067 SM00838 Elongation factor G C-terminus A388_01070 SM00358 Double-stranded RNA binding motif A388_01070 SM00535 Ribonuclease III family A388_01083 SM00267 diguanylate cyclase A388_01085 SM00487 DEAD-like helicases superfamily A388_01085 SM00490 helicase superfamily c-terminal domain A388_01088 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A388_01092 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase A388_01112 SM01329 A388_01112 A388_01123 SM00880 A388_01123 A388_01123 SM01118 A388_01123 A388_01135 SM00487 DEAD-like helicases superfamily A388_01135 SM00490 helicase superfamily c-terminal domain A388_01146 SM00344 helix_turn_helix ASNC type A388_01152 SM00382 ATPases associated with a variety of cellular activities A388_01161 SM00936 Penicillin-binding protein 5, C-terminal domain A388_01165 SM00257 Lysin motif A388_01172 SM00052 Putative diguanylate phosphodiesterase A388_01175 SM00841 Elongation factor P, C-terminal A388_01175 SM01185 A388_01175 A388_01208 SM00382 ATPases associated with a variety of cellular activities A388_01217 SM00382 ATPases associated with a variety of cellular activities A388_01218 SM00382 ATPases associated with a variety of cellular activities A388_01230 SM01092 CO dehydrogenase flavoprotein C-terminal domain A388_01231 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain A388_01233 SM00463 Small MutS-related domain A388_01241 SM01230 A388_01241 A388_01252 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A388_01254 SM00919 Malic enzyme, NAD binding domain A388_01254 SM01274 A388_01254 A388_01255 SM00052 Putative diguanylate phosphodiesterase A388_01255 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) A388_01255 SM00091 PAS domain A388_01255 SM00267 diguanylate cyclase A388_01258 SM00996 S-adenosyl-L-homocysteine hydrolase A388_01258 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain A388_01262 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_01273 SM00342 helix_turn_helix, arabinose operon control protein A388_01283 SM00382 ATPases associated with a variety of cellular activities A388_01299 SM00530 Helix-turn-helix XRE-family like proteins A388_01305 SM00382 ATPases associated with a variety of cellular activities A388_01348 SM01040 BRO family, N-terminal domain A388_01366 SM00479 A388_01366 A388_01373 SM00062 Bacterial periplasmic substrate-binding proteins A388_01376 SM00382 ATPases associated with a variety of cellular activities A388_01380 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_01385 SM00382 ATPases associated with a variety of cellular activities A388_01387 SM00448 cheY-homologous receiver domain A388_01387 SM00862 Transcriptional regulatory protein, C terminal A388_01388 SM00387 Histidine kinase-like ATPases A388_01388 SM00388 His Kinase A (phosphoacceptor) domain A388_01399 SM00830 Chorismate mutase type II A388_01411 SM00357 Cold shock protein domain A388_01412 SM00487 DEAD-like helicases superfamily A388_01412 SM00490 helicase superfamily c-terminal domain A388_01416 SM00855 Phosphoglycerate mutase family A388_01432 SM00220 Serine/Threonine protein kinases, catalytic domain A388_01446 SM00095 Transthyretin A388_01448 SM00448 cheY-homologous receiver domain A388_01448 SM00862 Transcriptional regulatory protein, C terminal A388_01449 SM00387 Histidine kinase-like ATPases A388_01449 SM00388 His Kinase A (phosphoacceptor) domain A388_01457 SM00388 His Kinase A (phosphoacceptor) domain A388_01458 SM00448 cheY-homologous receiver domain A388_01458 SM00862 Transcriptional regulatory protein, C terminal A388_01470 SM00849 Metallo-beta-lactamase superfamily A388_01472 SM00382 ATPases associated with a variety of cellular activities A388_01472 SM00930 A388_01472 A388_01474 SM01209 A388_01474 A388_01474 SM01210 A388_01474 A388_01475 SM00798 AICARFT/IMPCHase bienzyme A388_01475 SM00851 MGS-like domain A388_01480 SM01228 A388_01480 A388_01484 SM00460 Transglutaminase/protease-like homologues A388_01486 SM01005 Alanine racemase, C-terminal domain A388_01509 SM00937 A388_01509 A388_01512 SM00062 Bacterial periplasmic substrate-binding proteins A388_01513 SM00342 helix_turn_helix, arabinose operon control protein A388_01514 SM00822 A388_01514 A388_01517 SM00903 Flavin reductase like domain A388_01520 SM00905 Dihydroneopterin aldolase A388_01525 SM00387 Histidine kinase-like ATPases A388_01525 SM00388 His Kinase A (phosphoacceptor) domain A388_01526 SM00448 cheY-homologous receiver domain A388_01526 SM00862 Transcriptional regulatory protein, C terminal A388_01527 SM01230 A388_01527 A388_01543 SM00363 S4 RNA-binding domain A388_01548 SM00853 MutL C terminal dimerisation domain A388_01548 SM01340 A388_01548 A388_01564 SM00382 ATPases associated with a variety of cellular activities A388_01570 SM00972 Spore Coat Protein U domain A388_01573 SM00972 Spore Coat Protein U domain A388_01577 SM00830 Chorismate mutase type II A388_01578 SM00344 helix_turn_helix ASNC type A388_01596 SM00382 ATPases associated with a variety of cellular activities A388_01601 SM00831 Cation transporter/ATPase, N-terminus A388_01604 SM00344 helix_turn_helix ASNC type A388_01610 SM00822 A388_01610 A388_01615 SM00382 ATPases associated with a variety of cellular activities A388_01621 SM00226 Low molecular weight phosphatase family A388_01628 SM01236 A388_01628 A388_01631 SM00878 Biotin carboxylase C-terminal domain A388_01636 SM00448 cheY-homologous receiver domain A388_01636 SM01012 A388_01636 A388_01640 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A388_01642 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A388_01643 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_01646 SM00852 Probable molybdopterin binding domain A388_01647 SM00852 Probable molybdopterin binding domain A388_01649 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_01666 SM00382 ATPases associated with a variety of cellular activities A388_01666 SM00448 cheY-homologous receiver domain A388_01667 SM00091 PAS domain A388_01667 SM00387 Histidine kinase-like ATPases A388_01667 SM00388 His Kinase A (phosphoacceptor) domain A388_01668 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_01674 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A388_01676 SM00935 Outer membrane protein (OmpH-like) A388_01682 SM00382 ATPases associated with a variety of cellular activities A388_01683 SM00363 S4 RNA-binding domain A388_01689 SM00344 helix_turn_helix ASNC type A388_01698 SM00052 Putative diguanylate phosphodiesterase A388_01698 SM00091 PAS domain A388_01698 SM00267 diguanylate cyclase A388_01700 SM00347 helix_turn_helix multiple antibiotic resistance protein A388_01716 SM00116 Domain in cystathionine beta-synthase and other proteins. A388_01721 SM00382 ATPases associated with a variety of cellular activities A388_01721 SM00962 SRP54-type protein, GTPase domain A388_01721 SM00963 SRP54-type protein, helical bundle domain A388_01734 SM01264 A388_01734 A388_01742 SM00859 Semialdehyde dehydrogenase, NAD binding domain A388_01745 SM00382 ATPases associated with a variety of cellular activities A388_01745 SM01086 C-terminal, D2-small domain, of ClpB protein A388_01758 SM01192 A388_01758 A388_01758 SM01193 A388_01758 A388_01762 SM00882 Coenzyme A transferase A388_01763 SM00882 Coenzyme A transferase A388_01765 SM00998 Adenylosuccinate lyase C-terminus A388_01772 SM00710 Parallel beta-helix repeats A388_01774 SM00564 beta-propeller repeat A388_01778 SM00849 Metallo-beta-lactamase superfamily A388_01779 SM00346 helix_turn_helix isocitrate lyase regulation A388_01783 SM00855 Phosphoglycerate mutase family A388_01787 SM00347 helix_turn_helix multiple antibiotic resistance protein A388_01796 SM00903 Flavin reductase like domain A388_01797 SM00342 helix_turn_helix, arabinose operon control protein A388_01804 SM00882 Coenzyme A transferase A388_01805 SM00882 Coenzyme A transferase A388_01808 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A388_01811 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_01811 SM00895 A388_01811 A388_01821 SM00422 helix_turn_helix, mercury resistance A388_01827 SM00342 helix_turn_helix, arabinose operon control protein A388_01848 SM00860 SMI1 / KNR4 family A388_01856 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_01856 SM00866 A388_01856 A388_01874 SM00342 helix_turn_helix, arabinose operon control protein A388_01875 SM01400 A388_01875 A388_01880 SM00421 helix_turn_helix, Lux Regulon A388_01887 SM00822 A388_01887 A388_01888 SM00822 A388_01888 A388_01890 SM00342 helix_turn_helix, arabinose operon control protein A388_01892 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A388_01892 SM00387 Histidine kinase-like ATPases A388_01892 SM00388 His Kinase A (phosphoacceptor) domain A388_01893 SM00448 cheY-homologous receiver domain A388_01893 SM00862 Transcriptional regulatory protein, C terminal A388_01949 SM00829 Enoylreductase A388_01954 SM00155 Phospholipase D. Active site motifs. A388_01959 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_01968 SM00382 ATPases associated with a variety of cellular activities A388_01975 SM00342 helix_turn_helix, arabinose operon control protein A388_01977 SM00903 Flavin reductase like domain A388_01982 SM00342 helix_turn_helix, arabinose operon control protein A388_01987 SM00882 Coenzyme A transferase A388_01988 SM00882 Coenzyme A transferase A388_01999 SM00567 E-Z type HEAT repeats A388_02000 SM00382 ATPases associated with a variety of cellular activities A388_02005 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02005 SM00866 A388_02005 A388_02009 SM00342 helix_turn_helix, arabinose operon control protein A388_02014 SM00849 Metallo-beta-lactamase superfamily A388_02015 SM00382 ATPases associated with a variety of cellular activities A388_02017 SM00829 Enoylreductase A388_02021 SM00861 Transketolase, pyrimidine binding domain A388_02023 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_02028 SM00267 diguanylate cyclase A388_02033 SM00382 ATPases associated with a variety of cellular activities A388_02039 SM00341 Helicase and RNase D C-terminal A388_02039 SM00474 3'-5' exonuclease A388_02040 SM00493 A388_02040 A388_02050 SM01324 A388_02050 A388_02066 SM00855 Phosphoglycerate mutase family A388_02071 SM01006 Siderophore biosynthesis protein domain A388_02089 SM00342 helix_turn_helix, arabinose operon control protein A388_02091 SM00411 bacterial (prokaryotic) histone like domain A388_02098 SM00271 DnaJ molecular chaperone homology domain A388_02101 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain A388_02103 SM00487 DEAD-like helicases superfamily A388_02103 SM00490 helicase superfamily c-terminal domain A388_02103 SM00982 A388_02103 A388_02103 SM01058 CarD-like/TRCF domain A388_02114 SM00382 ATPases associated with a variety of cellular activities A388_02128 SM00342 helix_turn_helix, arabinose operon control protein A388_02131 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family A388_02133 SM00411 bacterial (prokaryotic) histone like domain A388_02134 SM00316 Ribosomal protein S1-like RNA-binding domain A388_02139 SM00986 Uracil DNA glycosylase superfamily A388_02139 SM00987 UreE urease accessory protein, C-terminal domain A388_02151 SM00382 ATPases associated with a variety of cellular activities A388_02154 SM00470 ParB-like nuclease domain A388_02166 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. A388_02168 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A388_02172 SM00382 ATPases associated with a variety of cellular activities A388_02174 SM00342 helix_turn_helix, arabinose operon control protein A388_02178 SM00344 helix_turn_helix ASNC type A388_02185 SM00867 YceI-like domain A388_02187 SM00861 Transketolase, pyrimidine binding domain A388_02194 SM00530 Helix-turn-helix XRE-family like proteins A388_02198 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_02198 SM00876 Biotin and Thiamin Synthesis associated domain A388_02221 SM01236 A388_02221 A388_02224 SM00563 Phosphate acyltransferases A388_02226 SM00344 helix_turn_helix ASNC type A388_02228 SM00382 ATPases associated with a variety of cellular activities A388_02231 SM00062 Bacterial periplasmic substrate-binding proteins A388_02240 SM00930 A388_02240 A388_02244 SM00100 Cyclic nucleotide-monophosphate binding domain A388_02244 SM00419 helix_turn_helix, cAMP Regulatory protein A388_02251 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. A388_02254 SM00342 helix_turn_helix, arabinose operon control protein A388_02259 SM00870 A388_02259 A388_02260 SM00481 DNA polymerase alpha chain like domain A388_02270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A388_02276 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02276 SM00895 A388_02276 A388_02281 SM00382 ATPases associated with a variety of cellular activities A388_02282 SM00062 Bacterial periplasmic substrate-binding proteins A388_02292 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02296 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. A388_02306 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02313 SM00822 A388_02313 A388_02314 SM00450 Rhodanese Homology Domain A388_02320 SM00062 Bacterial periplasmic substrate-binding proteins A388_02321 SM00062 Bacterial periplasmic substrate-binding proteins A388_02322 SM00382 ATPases associated with a variety of cellular activities A388_02326 SM00421 helix_turn_helix, Lux Regulon A388_02326 SM00448 cheY-homologous receiver domain A388_02327 SM00387 Histidine kinase-like ATPases A388_02327 SM00388 His Kinase A (phosphoacceptor) domain A388_02327 SM00448 cheY-homologous receiver domain A388_02329 SM00344 helix_turn_helix ASNC type A388_02333 SM00384 DNA binding domain with preference for A/T rich regions A388_02336 SM01060 A388_02336 A388_02337 SM01236 A388_02337 A388_02355 SM00878 Biotin carboxylase C-terminal domain A388_02364 SM00882 Coenzyme A transferase A388_02365 SM00882 Coenzyme A transferase A388_02372 SM00346 helix_turn_helix isocitrate lyase regulation A388_02376 SM00346 helix_turn_helix isocitrate lyase regulation A388_02384 SM00382 ATPases associated with a variety of cellular activities A388_02386 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02386 SM00866 A388_02386 A388_02388 SM00346 helix_turn_helix isocitrate lyase regulation A388_02397 SM00903 Flavin reductase like domain A388_02400 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02400 SM00895 A388_02400 A388_02403 SM01060 A388_02403 A388_02413 SM00357 Cold shock protein domain A388_02440 SM00342 helix_turn_helix, arabinose operon control protein A388_02445 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02445 SM00895 A388_02445 A388_02447 SM01130 A388_02447 A388_02450 SM00422 helix_turn_helix, mercury resistance A388_02457 SM00248 ankyrin repeats A388_02464 SM00382 ATPases associated with a variety of cellular activities A388_02464 SM01086 C-terminal, D2-small domain, of ClpB protein A388_02481 SM00382 ATPases associated with a variety of cellular activities A388_02488 SM00796 Allophanate hydrolase subunit 1 A388_02488 SM00797 Allophanate hydrolase subunit 2 A388_02488 SM00878 Biotin carboxylase C-terminal domain A388_02491 SM00829 Enoylreductase A388_02497 SM00671 Sel1-like repeats. A388_02499 SM00878 Biotin carboxylase C-terminal domain A388_02500 SM00796 Allophanate hydrolase subunit 1 A388_02500 SM00797 Allophanate hydrolase subunit 2 A388_02525 SM00052 Putative diguanylate phosphodiesterase A388_02528 SM00344 helix_turn_helix ASNC type A388_02529 SM00533 DNA-binding domain of DNA mismatch repair MUTS family A388_02529 SM00534 ATPase domain of DNA mismatch repair MUTS family A388_02538 SM00382 ATPases associated with a variety of cellular activities A388_02540 SM00382 ATPases associated with a variety of cellular activities A388_02544 SM00116 Domain in cystathionine beta-synthase and other proteins. A388_02545 SM00840 A388_02545 A388_02556 SM00710 Parallel beta-helix repeats A388_02557 SM00060 Fibronectin type 3 domain A388_02586 SM00357 Cold shock protein domain A388_02591 SM00530 Helix-turn-helix XRE-family like proteins A388_02602 SM00422 helix_turn_helix, mercury resistance A388_02614 SM00382 ATPases associated with a variety of cellular activities A388_02614 SM00487 DEAD-like helicases superfamily A388_02614 SM00490 helicase superfamily c-terminal domain A388_02614 SM00847 Helicase associated domain (HA2) Add an annotation A388_02630 SM00981 A388_02630 A388_02633 SM00382 ATPases associated with a variety of cellular activities A388_02633 SM01086 C-terminal, D2-small domain, of ClpB protein A388_02637 SM00100 Cyclic nucleotide-monophosphate binding domain A388_02637 SM00419 helix_turn_helix, cAMP Regulatory protein A388_02642 SM00788 Adenylosuccinate synthetase A388_02644 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain A388_02645 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A388_02660 SM00487 DEAD-like helicases superfamily A388_02703 SM00530 Helix-turn-helix XRE-family like proteins A388_02708 SM00382 ATPases associated with a variety of cellular activities A388_02723 SM00479 A388_02723 A388_02748 SM00342 helix_turn_helix, arabinose operon control protein A388_02757 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02757 SM00895 A388_02757 A388_02758 SM00347 helix_turn_helix multiple antibiotic resistance protein A388_02768 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02768 SM00895 A388_02768 A388_02770 SM01130 A388_02770 A388_02771 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain A388_02773 SM00858 A388_02773 A388_02775 SM00342 helix_turn_helix, arabinose operon control protein A388_02783 SM00344 helix_turn_helix ASNC type A388_02786 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_02786 SM00895 A388_02786 A388_02806 SM00267 diguanylate cyclase A388_02808 SM00479 A388_02808 A388_02818 SM00382 ATPases associated with a variety of cellular activities A388_02822 SM00257 Lysin motif A388_02823 SM00479 A388_02823 A388_02834 SM00422 helix_turn_helix, mercury resistance A388_02838 SM01011 Aminopeptidase P, N-terminal domain A388_02846 SM00382 ATPases associated with a variety of cellular activities A388_02846 SM00464 Found in ATP-dependent protease La (LON) A388_02850 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase A388_02852 SM00478 endonuclease III A388_02861 SM00988 UreE urease accessory protein, N-terminal domain A388_02870 SM01091 Transporter associated domain A388_02890 SM00382 ATPases associated with a variety of cellular activities A388_02892 SM00947 Carbonic anhydrase A388_02904 SM01018 B12 binding domain A388_02905 SM00861 Transketolase, pyrimidine binding domain A388_02908 SM00822 A388_02908 A388_02913 SM00342 helix_turn_helix, arabinose operon control protein A388_02931 SM00346 helix_turn_helix isocitrate lyase regulation A388_02939 SM01322 A388_02939 A388_02958 SM01130 A388_02958 A388_02978 SM01040 BRO family, N-terminal domain A388_02988 SM01004 Delta-aminolevulinic acid dehydratase A388_02997 SM00382 ATPases associated with a variety of cellular activities A388_03011 SM00563 Phosphate acyltransferases A388_03018 SM00843 A388_03018 A388_03026 SM00838 Elongation factor G C-terminus A388_03026 SM00889 Elongation factor G, domain IV A388_03030 SM00825 Beta-ketoacyl synthase A388_03042 SM01329 A388_03042 A388_03051 SM00363 S4 RNA-binding domain A388_03053 SM00400 zinc finger A388_03053 SM00493 A388_03053 A388_03055 SM00028 Tetratricopeptide repeats A388_03061 SM01400 A388_03061 A388_03070 SM00257 Lysin motif A388_03072 SM00822 A388_03072 A388_03073 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. A388_03080 SM00363 S4 RNA-binding domain A388_03090 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A388_03090 SM00292 breast cancer carboxy-terminal domain A388_03090 SM00532 Ligase N family A388_03091 SM00771 ZipA, C-terminal domain (FtsZ-binding) A388_03093 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_03097 SM00382 ATPases associated with a variety of cellular activities A388_03097 SM00962 SRP54-type protein, GTPase domain A388_03097 SM00963 SRP54-type protein, helical bundle domain A388_03126 SM00357 Cold shock protein domain A388_03135 SM00926 Molybdopterin oxidoreductase Fe4S4 domain A388_03135 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region A388_03136 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region A388_03141 SM00267 diguanylate cyclase A388_03143 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A388_03143 SM00387 Histidine kinase-like ATPases A388_03143 SM00388 His Kinase A (phosphoacceptor) domain A388_03144 SM00448 cheY-homologous receiver domain A388_03144 SM00862 Transcriptional regulatory protein, C terminal A388_03157 SM00903 Flavin reductase like domain A388_03163 SM00342 helix_turn_helix, arabinose operon control protein A388_03217 SM00331 Sigma factor PP2C-like phosphatases A388_03221 SM00347 helix_turn_helix multiple antibiotic resistance protein A388_03223 SM00382 ATPases associated with a variety of cellular activities A388_03227 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs A388_03227 SM00474 3'-5' exonuclease A388_03227 SM00475 5'-3' exonuclease A388_03227 SM00482 DNA polymerase A domain A388_03230 SM00977 TilS substrate C-terminal domain A388_03234 SM00357 Cold shock protein domain A388_03234 SM00382 ATPases associated with a variety of cellular activities A388_03234 SM00959 Rho termination factor, N-terminal domain A388_03236 SM00411 bacterial (prokaryotic) histone like domain A388_03237 SM00873 B3/4 domain A388_03237 SM00874 tRNA synthetase B5 domain A388_03237 SM00896 Ferredoxin-fold anticodon binding domain A388_03247 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain A388_03256 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A388_03259 SM00954 Region found in RelA / SpoT proteins A388_03263 SM00073 Histidine Phosphotransfer domain A388_03263 SM00387 Histidine kinase-like ATPases A388_03263 SM00388 His Kinase A (phosphoacceptor) domain A388_03263 SM00448 cheY-homologous receiver domain A388_03271 SM01002 Alanine dehydrogenase/PNT, C-terminal domain A388_03271 SM01003 Alanine dehydrogenase/PNT, N-terminal domain A388_03276 SM00530 Helix-turn-helix XRE-family like proteins A388_03280 SM00448 cheY-homologous receiver domain A388_03280 SM00862 Transcriptional regulatory protein, C terminal A388_03281 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain A388_03281 SM00387 Histidine kinase-like ATPases A388_03281 SM00388 His Kinase A (phosphoacceptor) domain A388_03282 SM00746 metallochaperone-like domain A388_03307 SM01236 A388_03307 A388_03310 SM00052 Putative diguanylate phosphodiesterase A388_03310 SM00267 diguanylate cyclase A388_03319 SM00382 ATPases associated with a variety of cellular activities A388_03323 SM00479 A388_03323 A388_03325 SM00450 Rhodanese Homology Domain A388_03330 SM00564 beta-propeller repeat A388_03335 SM00028 Tetratricopeptide repeats A388_03337 SM00562 A388_03337 A388_03339 SM00014 Acid phosphatase homologues A388_03341 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A388_03341 SM00245 tail specific protease A388_03356 SM00382 ATPases associated with a variety of cellular activities A388_03356 SM00994 ClpX C4-type zinc finger A388_03356 SM01086 C-terminal, D2-small domain, of ClpB protein A388_03360 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. A388_03361 SM00917 LeuA allosteric (dimerisation) domain A388_03364 SM00671 Sel1-like repeats. A388_03392 SM00360 RNA recognition motif A388_03396 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain A388_03396 SM00437 Bacterial DNA topoisomerase I DNA-binding domain A388_03396 SM00493 A388_03396 A388_03399 SM00829 Enoylreductase A388_03401 SM00382 ATPases associated with a variety of cellular activities A388_03407 SM00859 Semialdehyde dehydrogenase, NAD binding domain A388_03410 SM00870 A388_03410 A388_03412 SM00342 helix_turn_helix, arabinose operon control protein A388_03413 SM00316 Ribosomal protein S1-like RNA-binding domain A388_03416 SM01329 A388_03416 A388_03424 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. A388_03432 SM00363 S4 RNA-binding domain A388_03433 SM00316 Ribosomal protein S1-like RNA-binding domain A388_03439 SM00729 Elongator protein 3, MiaB family, Radical SAM A388_03452 SM00849 Metallo-beta-lactamase superfamily A388_03460 SM00116 Domain in cystathionine beta-synthase and other proteins. A388_03460 SM01091 Transporter associated domain A388_03466 SM00487 DEAD-like helicases superfamily A388_03466 SM00490 helicase superfamily c-terminal domain A388_03470 SM00271 DnaJ molecular chaperone homology domain A388_03473 SM00316 Ribosomal protein S1-like RNA-binding domain A388_03473 SM00322 K homology RNA-binding domain A388_03474 SM01387 A388_03474 A388_03476 SM00382 ATPases associated with a variety of cellular activities A388_03497 SM00316 Ribosomal protein S1-like RNA-binding domain A388_03509 SM00967 RNA 2'-O ribose methyltransferase substrate binding A388_03511 SM00028 Tetratricopeptide repeats A388_03514 SM00732 Likely ribonuclease with RNase H fold. A388_03519 SM00346 helix_turn_helix isocitrate lyase regulation A388_03521 SM00342 helix_turn_helix, arabinose operon control protein A388_03524 SM00278 Helix-hairpin-helix DNA-binding motif class 1 A388_03524 SM00465 GIY-YIG type nucleases (URI domain) A388_03532 SM00422 helix_turn_helix, mercury resistance A388_03537 SM00387 Histidine kinase-like ATPases A388_03545 SM00663 RNA polymerase I subunit A N-terminus A388_03550 SM00649 Ribosomal protein L11/L12 A388_03551 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. A388_03551 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. A388_03561 SM00240 Forkhead associated domain A388_03563 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. A388_03565 SM00528 Domain in histone-like proteins of HNS family A388_03571 SM00448 cheY-homologous receiver domain A388_03571 SM00850 LytTr DNA-binding domain A388_03589 SM00899 A388_03589 A388_03595 SM00421 helix_turn_helix, Lux Regulon A388_03595 SM00448 cheY-homologous receiver domain A388_03596 SM00387 Histidine kinase-like ATPases A388_03596 SM00388 His Kinase A (phosphoacceptor) domain A388_03597 SM00382 ATPases associated with a variety of cellular activities A388_03597 SM00448 cheY-homologous receiver domain A388_03598 SM00245 tail specific protease A388_03611 SM00938 Nitrogen regulatory protein P-II A388_03620 SM00422 helix_turn_helix, mercury resistance A388_03622 SM00857 Resolvase, N terminal domain A388_03641 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_03643 SM00530 Helix-turn-helix XRE-family like proteins A388_03652 SM00829 Enoylreductase A388_03655 SM00267 diguanylate cyclase A388_03661 SM00387 Histidine kinase-like ATPases A388_03661 SM00388 His Kinase A (phosphoacceptor) domain A388_03661 SM00448 cheY-homologous receiver domain A388_03663 SM00421 helix_turn_helix, Lux Regulon A388_03663 SM00448 cheY-homologous receiver domain A388_03666 SM00344 helix_turn_helix ASNC type A388_03674 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor A388_03676 SM00937 A388_03676 A388_03681 SM00116 Domain in cystathionine beta-synthase and other proteins. A388_03681 SM01240 A388_03681 A388_03683 SM00849 Metallo-beta-lactamase superfamily A388_03692 SM00864 Tubulin/FtsZ family, GTPase domain A388_03692 SM00865 Tubulin/FtsZ family, C-terminal domain A388_03693 SM00842 Cell division protein FtsA A388_03706 SM00267 diguanylate cyclase A388_03719 SM00387 Histidine kinase-like ATPases A388_03719 SM00433 TopoisomeraseII A388_03726 SM00257 Lysin motif A388_03737 SM00448 cheY-homologous receiver domain A388_03737 SM00862 Transcriptional regulatory protein, C terminal A388_03738 SM00387 Histidine kinase-like ATPases A388_03738 SM00388 His Kinase A (phosphoacceptor) domain A388_03741 SM00450 Rhodanese Homology Domain A388_03756 SM00387 Histidine kinase-like ATPases A388_03768 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_03768 SM00866 A388_03768 A388_03770 SM00833 Cobalamin synthesis protein cobW C-terminal domain A388_03776 SM00346 helix_turn_helix isocitrate lyase regulation A388_03782 SM01130 A388_03782 A388_03787 SM00382 ATPases associated with a variety of cellular activities A388_03793 SM00478 endonuclease III A388_03793 SM00525 A388_03793 A388_03797 SM00829 Enoylreductase A388_03798 SM00345 helix_turn_helix gluconate operon transcriptional repressor A388_03806 SM00271 DnaJ molecular chaperone homology domain A388_p00015 SM00671 Sel1-like repeats. A388_p00016 SM00857 Resolvase, N terminal domain A388_p00029 SM00530 Helix-turn-helix XRE-family like proteins