locus-tag class description NIY05_00005 PF00308 Bacterial dnaA protein NIY05_00005 PF08299 Bacterial dnaA protein helix-turn-helix NIY05_00005 PF11638 DnaA N-terminal domain NIY05_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NIY05_00010 PF02767 DNA polymerase III beta subunit, central domain NIY05_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NIY05_00015 PF02463 RecF/RecN/SMC N terminal domain NIY05_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_00020 PF18053 DNA gyrase B subunit insert domain NIY05_00020 PF01751 Toprim domain NIY05_00020 PF00204 DNA gyrase B NIY05_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NIY05_00030 PF09335 SNARE associated Golgi protein NIY05_00035 PF00005 ABC transporter NIY05_00035 PF12848 ABC transporter NIY05_00055 PF01521 Iron-sulphur cluster biosynthesis NIY05_00060 PF00561 alpha/beta hydrolase fold NIY05_00065 PF03702 Anhydro-N-acetylmuramic acid kinase NIY05_00070 PF00579 tRNA synthetases class I (W and Y) NIY05_00110 PF00209 Sodium:neurotransmitter symporter family NIY05_00120 PF01029 NusB family NIY05_00120 PF01189 16S rRNA methyltransferase RsmB/F NIY05_00125 PF00551 Formyl transferase NIY05_00125 PF02911 Formyl transferase, C-terminal domain NIY05_00130 PF00920 Dehydratase family NIY05_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_00145 PF03466 LysR substrate binding domain NIY05_00150 PF00860 Permease family NIY05_00155 PF00311 Phosphoenolpyruvate carboxylase NIY05_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region NIY05_00160 PF00440 Bacterial regulatory proteins, tetR family NIY05_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_00170 PF00873 AcrB/AcrD/AcrF family NIY05_00180 PF00226 DnaJ domain NIY05_00180 PF01556 DnaJ C terminal domain NIY05_00180 PF00684 DnaJ central domain NIY05_00190 PF01113 Dihydrodipicolinate reductase, N-terminus NIY05_00190 PF05173 Dihydrodipicolinate reductase, C-terminus NIY05_00200 PF07690 Major Facilitator Superfamily NIY05_00205 PF00248 Aldo/keto reductase family NIY05_00210 PF03466 LysR substrate binding domain NIY05_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_00225 PF00392 Bacterial regulatory proteins, gntR family NIY05_00225 PF00155 Aminotransferase class I and II NIY05_00230 PF00107 Zinc-binding dehydrogenase NIY05_00230 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_00235 PF03352 Methyladenine glycosylase NIY05_00250 PF10576 Iron-sulfur binding domain of endonuclease III NIY05_00250 PF00633 Helix-hairpin-helix motif NIY05_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein NIY05_00250 PF14815 NUDIX domain NIY05_00265 PF07043 Protein of unknown function (DUF1328) NIY05_00270 PF03692 Putative zinc- or iron-chelating domain NIY05_00275 PF07995 Glucose / Sorbosone dehydrogenase NIY05_00280 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_00280 PF12002 MgsA AAA+ ATPase C terminal NIY05_00280 PF16193 AAA C-terminal domain NIY05_00285 PF01226 Formate/nitrite transporter NIY05_00295 PF01259 SAICAR synthetase NIY05_00305 PF00701 Dihydrodipicolinate synthetase family NIY05_00310 PF00857 Isochorismatase family NIY05_00315 PF01758 Sodium Bile acid symporter family NIY05_00320 PF01554 MatE NIY05_00325 PF04463 Protein of unknown function (DUF523) NIY05_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY05_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY05_00345 PF02798 Glutathione S-transferase, N-terminal domain NIY05_00345 PF14497 Glutathione S-transferase, C-terminal domain NIY05_00355 PF00324 Amino acid permease NIY05_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY05_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIY05_00375 PF00392 Bacterial regulatory proteins, gntR family NIY05_00375 PF07702 UTRA domain NIY05_00380 PF05962 HutD NIY05_00385 PF01175 Urocanase Rossmann-like domain NIY05_00385 PF17391 Urocanase N-terminal domain NIY05_00385 PF17392 Urocanase C-terminal domain NIY05_00390 PF00221 Aromatic amino acid lyase NIY05_00395 PF00324 Amino acid permease NIY05_00400 PF01979 Amidohydrolase family NIY05_00405 PF00491 Arginase family NIY05_00420 PF01177 Asp/Glu/Hydantoin racemase NIY05_00425 PF01380 SIS domain NIY05_00430 PF12804 MobA-like NTP transferase domain NIY05_00430 PF14602 Hexapeptide repeat of succinyl-transferase NIY05_00430 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_00435 PF04608 Phosphatidylglycerophosphatase A NIY05_00440 PF02769 AIR synthase related protein, C-terminal domain NIY05_00440 PF00586 AIR synthase related protein, N-terminal domain NIY05_00445 PF01029 NusB family NIY05_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase NIY05_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIY05_00455 PF00925 GTP cyclohydrolase II NIY05_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase NIY05_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIY05_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NIY05_00490 PF00581 Rhodanese-like domain NIY05_00495 PF02666 Phosphatidylserine decarboxylase NIY05_00500 PF03069 Acetamidase/Formamidase family NIY05_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_00520 PF00512 His Kinase A (phospho-acceptor) domain NIY05_00520 PF00989 PAS fold NIY05_00520 PF11808 Phosphate regulon sensor protein PhoR NIY05_00525 PF00072 Response regulator receiver domain NIY05_00525 PF00486 Transcriptional regulatory protein, C terminal NIY05_00535 PF00106 short chain dehydrogenase NIY05_00540 PF01554 MatE NIY05_00545 PF00155 Aminotransferase class I and II NIY05_00550 PF04286 Protein of unknown function (DUF445) NIY05_00565 PF04262 Glutamate-cysteine ligase NIY05_00570 PF02600 Disulfide bond formation protein DsbB NIY05_00575 PF04717 Type VI secretion system, phage-baseplate injector NIY05_00575 PF13296 Putative type VI secretion system Rhs element Vgr NIY05_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY05_00580 PF01476 LysM domain NIY05_00580 PF00877 NlpC/P60 family NIY05_00595 PF05728 Uncharacterised protein family (UPF0227) NIY05_00600 PF01751 Toprim domain NIY05_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_00600 PF00986 DNA gyrase B subunit, carboxyl terminus NIY05_00600 PF00204 DNA gyrase B NIY05_00605 PF00106 short chain dehydrogenase NIY05_00610 PF04115 Ureidoglycolate lyase NIY05_00615 PF03561 Allantoicase repeat NIY05_00620 PF01494 FAD binding domain NIY05_00630 PF00860 Permease family NIY05_00635 PF00576 HIUase/Transthyretin family NIY05_00665 PF02683 Cytochrome C biogenesis protein transmembrane region NIY05_00665 PF11412 Disulphide bond corrector protein DsbC NIY05_00670 PF00990 Diguanylate cyclase, GGDEF domain NIY05_00670 PF07694 5TMR of 5TMR-LYT NIY05_00675 PF07859 alpha/beta hydrolase fold NIY05_00685 PF03960 ArsC family NIY05_00690 PF03372 Endonuclease/Exonuclease/phosphatase family NIY05_00695 PF00156 Phosphoribosyl transferase domain NIY05_00700 PF07715 TonB-dependent Receptor Plug Domain NIY05_00700 PF00593 TonB dependent receptor NIY05_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NIY05_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NIY05_00715 PF04101 Glycosyltransferase family 28 C-terminal domain NIY05_00715 PF03033 Glycosyltransferase family 28 N-terminal domain NIY05_00720 PF01225 Mur ligase family, catalytic domain NIY05_00720 PF02875 Mur ligase family, glutamate ligase domain NIY05_00720 PF08245 Mur ligase middle domain NIY05_00725 PF01820 D-ala D-ala ligase N-terminus NIY05_00725 PF07478 D-ala D-ala ligase C-terminus NIY05_00730 PF08478 POTRA domain, FtsQ-type NIY05_00730 PF03799 Cell division protein FtsQ NIY05_00735 PF02491 SHS2 domain inserted in FTSA NIY05_00740 PF00091 Tubulin/FtsZ family, GTPase domain NIY05_00740 PF12327 FtsZ family, C-terminal domain NIY05_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NIY05_00755 PF01551 Peptidase family M23 NIY05_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain NIY05_00760 PF00456 Transketolase, thiamine diphosphate binding domain NIY05_00765 PF02817 e3 binding domain NIY05_00765 PF00364 Biotin-requiring enzyme NIY05_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY05_00775 PF01169 Uncharacterized protein family UPF0016 NIY05_00780 PF07715 TonB-dependent Receptor Plug Domain NIY05_00780 PF00593 TonB dependent receptor NIY05_00785 PF01613 Flavin reductase like domain NIY05_00785 PF00258 Flavodoxin NIY05_00790 PF03692 Putative zinc- or iron-chelating domain NIY05_00795 PF00478 IMP dehydrogenase / GMP reductase domain NIY05_00795 PF00571 CBS domain NIY05_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY05_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY05_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY05_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY05_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NIY05_00805 PF01243 Pyridoxamine 5'-phosphate oxidase NIY05_00810 PF01368 DHH family NIY05_00810 PF02272 DHHA1 domain NIY05_00810 PF17768 RecJ OB domain NIY05_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY05_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NIY05_00840 PF04452 RNA methyltransferase NIY05_00845 PF00924 Mechanosensitive ion channel NIY05_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus NIY05_00855 PF00501 AMP-binding enzyme NIY05_00855 PF13193 AMP-binding enzyme C-terminal domain NIY05_00860 PF00857 Isochorismatase family NIY05_00865 PF01037 Lrp/AsnC ligand binding domain NIY05_00870 PF00872 Transposase, Mutator family NIY05_00875 PF00296 Luciferase-like monooxygenase NIY05_00880 PF03358 NADPH-dependent FMN reductase NIY05_00890 PF00072 Response regulator receiver domain NIY05_00890 PF00196 Bacterial regulatory proteins, luxR family NIY05_00900 PF00072 Response regulator receiver domain NIY05_00900 PF01627 Hpt domain NIY05_00900 PF00512 His Kinase A (phospho-acceptor) domain NIY05_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_00900 PF00672 HAMP domain NIY05_00905 PF04341 Protein of unknown function, DUF485 NIY05_00910 PF00474 Sodium:solute symporter family NIY05_00920 PF02028 BCCT, betaine/carnitine/choline family transporter NIY05_00930 PF00990 Diguanylate cyclase, GGDEF domain NIY05_00940 PF00005 ABC transporter NIY05_00940 PF17755 UvrA DNA-binding domain NIY05_00940 PF17760 UvrA interaction domain NIY05_00945 PF16925 Tetracyclin repressor-like, C-terminal domain NIY05_00945 PF00440 Bacterial regulatory proteins, tetR family NIY05_00950 PF00107 Zinc-binding dehydrogenase NIY05_00950 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_00960 PF06942 GlpM protein NIY05_00965 PF08543 Phosphomethylpyrimidine kinase NIY05_00965 PF02581 Thiamine monophosphate synthase NIY05_00965 PF03070 TENA/THI-4/PQQC family NIY05_00975 PF07690 Major Facilitator Superfamily NIY05_00980 PF00436 Single-strand binding protein family NIY05_00990 PF03591 AzlC protein NIY05_01000 PF00324 Amino acid permease NIY05_01005 PF00155 Aminotransferase class I and II NIY05_01005 PF00392 Bacterial regulatory proteins, gntR family NIY05_01010 PF00202 Aminotransferase class-III NIY05_01015 PF00171 Aldehyde dehydrogenase family NIY05_01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_01025 PF00857 Isochorismatase family NIY05_01030 PF02678 Pirin NIY05_01030 PF05726 Pirin C-terminal cupin domain NIY05_01035 PF01593 Flavin containing amine oxidoreductase NIY05_01055 PF07690 Major Facilitator Superfamily NIY05_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_01060 PF03466 LysR substrate binding domain NIY05_01080 PF00248 Aldo/keto reductase family NIY05_01085 PF02311 AraC-like ligand binding domain NIY05_01085 PF12833 Helix-turn-helix domain NIY05_01115 PF01638 HxlR-like helix-turn-helix NIY05_01120 PF02525 Flavodoxin-like fold NIY05_01140 PF02705 K+ potassium transporter NIY05_01165 PF00230 Major intrinsic protein NIY05_01180 PF00977 Histidine biosynthesis protein NIY05_01185 PF01636 Phosphotransferase enzyme family NIY05_01200 PF03992 Antibiotic biosynthesis monooxygenase NIY05_01215 PF00977 Histidine biosynthesis protein NIY05_01230 PF00117 Glutamine amidotransferase class-I NIY05_01235 PF00475 Imidazoleglycerol-phosphate dehydratase NIY05_01255 PF00583 Acetyltransferase (GNAT) family NIY05_01260 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NIY05_01260 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NIY05_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_01270 PF00512 His Kinase A (phospho-acceptor) domain NIY05_01270 PF00672 HAMP domain NIY05_01275 PF00072 Response regulator receiver domain NIY05_01275 PF00486 Transcriptional regulatory protein, C terminal NIY05_01280 PF17674 HHH domain NIY05_01280 PF00575 S1 RNA binding domain NIY05_01280 PF09371 Tex-like protein N-terminal domain NIY05_01280 PF16921 Tex protein YqgF-like domain NIY05_01285 PF00916 Sulfate permease family NIY05_01285 PF01740 STAS domain NIY05_01290 PF00106 short chain dehydrogenase NIY05_01295 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY05_01300 PF12848 ABC transporter NIY05_01300 PF00005 ABC transporter NIY05_01325 PF04191 Phospholipid methyltransferase NIY05_01345 PF00529 HlyD membrane-fusion protein of T1SS NIY05_01345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_01350 PF00873 AcrB/AcrD/AcrF family NIY05_01355 PF01545 Cation efflux family NIY05_01385 PF00324 Amino acid permease NIY05_01400 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY05_01415 PF01795 MraW methylase family NIY05_01425 PF03717 Penicillin-binding Protein dimerisation domain NIY05_01425 PF00905 Penicillin binding protein transpeptidase domain NIY05_01430 PF08245 Mur ligase middle domain NIY05_01430 PF02875 Mur ligase family, glutamate ligase domain NIY05_01430 PF01225 Mur ligase family, catalytic domain NIY05_01435 PF08245 Mur ligase middle domain NIY05_01435 PF02875 Mur ligase family, glutamate ligase domain NIY05_01435 PF01225 Mur ligase family, catalytic domain NIY05_01440 PF00953 Glycosyl transferase family 4 NIY05_01450 PF13847 Methyltransferase domain NIY05_01455 PF00905 Penicillin binding protein transpeptidase domain NIY05_01455 PF00912 Transglycosylase NIY05_01455 PF17092 Penicillin-binding protein OB-like domain NIY05_01460 PF11104 Type IV pilus assembly protein PilM; NIY05_01465 PF05137 Fimbrial assembly protein (PilN) NIY05_01470 PF04350 Pilus assembly protein, PilO NIY05_01480 PF03958 Bacterial type II/III secretion system short domain NIY05_01480 PF00263 Bacterial type II and III secretion system protein NIY05_01480 PF11741 AMIN domain NIY05_01480 PF07660 Secretin and TonB N terminus short domain NIY05_01485 PF01202 Shikimate kinase NIY05_01490 PF01761 3-dehydroquinate synthase NIY05_01500 PF00310 Glutamine amidotransferases class-II NIY05_01500 PF04898 Glutamate synthase central domain NIY05_01500 PF01645 Conserved region in glutamate synthase NIY05_01500 PF01493 GXGXG motif NIY05_01505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIY05_01505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_01515 PF04011 LemA family NIY05_01520 PF04536 TPM domain NIY05_01530 PF00114 Pilin (bacterial filament) NIY05_01530 PF07963 Prokaryotic N-terminal methylation motif NIY05_01540 PF15864 Protein glycosylation ligase NIY05_01540 PF11846 Virulence factor membrane-bound polymerase, C-terminal NIY05_01540 PF04932 O-Antigen ligase NIY05_01550 PF00210 Ferritin-like domain NIY05_01555 PF04324 BFD-like [2Fe-2S] binding domain NIY05_01560 PF01042 Endoribonuclease L-PSP NIY05_01565 PF13291 ACT domain NIY05_01565 PF04607 Region found in RelA / SpoT proteins NIY05_01565 PF02824 TGS domain NIY05_01575 PF01192 RNA polymerase Rpb6 NIY05_01580 PF00625 Guanylate kinase NIY05_01585 PF02401 LytB protein NIY05_01625 PF00886 Ribosomal protein S16 NIY05_01630 PF05239 PRC-barrel domain NIY05_01630 PF01782 RimM N-terminal domain NIY05_01635 PF01746 tRNA (Guanine-1)-methyltransferase NIY05_01640 PF01245 Ribosomal protein L19 NIY05_01645 PF00561 alpha/beta hydrolase fold NIY05_01650 PF03280 Proteobacterial lipase chaperone protein NIY05_01655 PF16198 tRNA pseudouridylate synthase B C-terminal domain NIY05_01655 PF01509 TruB family pseudouridylate synthase (N terminal domain) NIY05_01655 PF09157 Pseudouridine synthase II TruB, C-terminal NIY05_01660 PF01925 Sulfite exporter TauE/SafE NIY05_01670 PF00892 EamA-like transporter family NIY05_01675 PF00892 EamA-like transporter family NIY05_01680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY05_01680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY05_01685 PF02913 FAD linked oxidases, C-terminal domain NIY05_01685 PF01565 FAD binding domain NIY05_01695 PF03992 Antibiotic biosynthesis monooxygenase NIY05_01700 PF02525 Flavodoxin-like fold NIY05_01710 PF07690 Major Facilitator Superfamily NIY05_01715 PF12805 FUSC-like inner membrane protein yccS NIY05_01720 PF00080 Copper/zinc superoxide dismutase (SODC) NIY05_01725 PF01594 AI-2E family transporter NIY05_01730 PF13614 AAA domain NIY05_01760 PF00324 Amino acid permease NIY05_01765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIY05_01765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIY05_01770 PF00202 Aminotransferase class-III NIY05_01775 PF04958 Arginine N-succinyltransferase beta subunit NIY05_01780 PF00171 Aldehyde dehydrogenase family NIY05_01785 PF04996 Succinylarginine dihydrolase NIY05_01790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NIY05_01805 PF00082 Subtilase family NIY05_01805 PF05922 Peptidase inhibitor I9 NIY05_01820 PF03466 LysR substrate binding domain NIY05_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_01825 PF00892 EamA-like transporter family NIY05_01835 PF02092 Glycyl-tRNA synthetase beta subunit NIY05_01835 PF05746 DALR anticodon binding domain NIY05_01840 PF02091 Glycyl-tRNA synthetase alpha subunit NIY05_01865 PF00571 CBS domain NIY05_01870 PF04024 PspC domain NIY05_01880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_01880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_01880 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_01880 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY05_01890 PF08501 Shikimate dehydrogenase substrate binding domain NIY05_01890 PF01488 Shikimate / quinate 5-dehydrogenase NIY05_01890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NIY05_01895 PF01218 Coproporphyrinogen III oxidase NIY05_01900 PF00925 GTP cyclohydrolase II NIY05_01905 PF02779 Transketolase, pyrimidine binding domain NIY05_01905 PF02780 Transketolase, C-terminal domain NIY05_01905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NIY05_01910 PF00459 Inositol monophosphatase family NIY05_01915 PF00271 Helicase conserved C-terminal domain NIY05_01915 PF12343 Cold shock protein DEAD box A NIY05_01915 PF00270 DEAD/DEAH box helicase NIY05_01915 PF03880 DbpA RNA binding domain NIY05_01925 PF00005 ABC transporter NIY05_01930 PF02405 Permease MlaE NIY05_01940 PF05494 MlaC protein NIY05_01950 PF01544 CorA-like Mg2+ transporter protein NIY05_01955 PF03641 Possible lysine decarboxylase NIY05_01960 PF00293 NUDIX domain NIY05_01965 PF00156 Phosphoribosyl transferase domain NIY05_01970 PF17191 RecG wedge domain NIY05_01970 PF00271 Helicase conserved C-terminal domain NIY05_01970 PF00270 DEAD/DEAH box helicase NIY05_01985 PF01553 Acyltransferase NIY05_01995 PF00375 Sodium:dicarboxylate symporter family NIY05_02005 PF01926 50S ribosome-binding GTPase NIY05_02010 PF02082 Transcriptional regulator NIY05_02015 PF00970 Oxidoreductase FAD-binding domain NIY05_02015 PF00042 Globin NIY05_02015 PF00175 Oxidoreductase NAD-binding domain NIY05_02020 PF05872 Bacterial protein of unknown function (DUF853) NIY05_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY05_02030 PF00117 Glutamine amidotransferase class-I NIY05_02035 PF00338 Ribosomal protein S10p/S20e NIY05_02040 PF00297 Ribosomal protein L3 NIY05_02045 PF00573 Ribosomal protein L4/L1 family NIY05_02050 PF00276 Ribosomal protein L23 NIY05_02055 PF03947 Ribosomal Proteins L2, C-terminal domain NIY05_02055 PF00181 Ribosomal Proteins L2, RNA binding domain NIY05_02060 PF00203 Ribosomal protein S19 NIY05_02065 PF00237 Ribosomal protein L22p/L17e NIY05_02075 PF00252 Ribosomal protein L16p/L10e NIY05_02080 PF00831 Ribosomal L29 protein NIY05_02085 PF00366 Ribosomal protein S17 NIY05_02090 PF00238 Ribosomal protein L14p/L23e NIY05_02095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NIY05_02095 PF00467 KOW motif NIY05_02100 PF00281 Ribosomal protein L5 NIY05_02100 PF00673 ribosomal L5P family C-terminus NIY05_02105 PF00253 Ribosomal protein S14p/S29e NIY05_02110 PF00410 Ribosomal protein S8 NIY05_02115 PF00347 Ribosomal protein L6 NIY05_02120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NIY05_02125 PF00333 Ribosomal protein S5, N-terminal domain NIY05_02125 PF03719 Ribosomal protein S5, C-terminal domain NIY05_02130 PF00327 Ribosomal protein L30p/L7e NIY05_02135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NIY05_02140 PF00344 SecY translocase NIY05_02145 PF00444 Ribosomal protein L36 NIY05_02150 PF00416 Ribosomal protein S13/S18 NIY05_02155 PF00411 Ribosomal protein S11 NIY05_02160 PF01479 S4 domain NIY05_02160 PF00163 Ribosomal protein S4/S9 N-terminal domain NIY05_02165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NIY05_02165 PF01000 RNA polymerase Rpb3/RpoA insert domain NIY05_02165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NIY05_02170 PF01196 Ribosomal protein L17 NIY05_02175 PF00743 Flavin-binding monooxygenase-like NIY05_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_02180 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_02185 PF03937 Flavinator of succinate dehydrogenase NIY05_02215 PF09526 Probable metal-binding protein (DUF2387) NIY05_02220 PF01432 Peptidase family M3 NIY05_02225 PF17876 Cold shock domain NIY05_02225 PF08461 Ribonuclease R winged-helix domain NIY05_02225 PF08206 Ribonuclease B OB domain NIY05_02225 PF00773 RNB domain NIY05_02225 PF00575 S1 RNA binding domain NIY05_02270 PF01557 Fumarylacetoacetate (FAA) hydrolase family NIY05_02275 PF12833 Helix-turn-helix domain NIY05_02280 PF00892 EamA-like transporter family NIY05_02285 PF03631 Virulence factor BrkB NIY05_02290 PF03358 NADPH-dependent FMN reductase NIY05_02315 PF02130 Uncharacterized protein family UPF0054 NIY05_02320 PF02562 PhoH-like protein NIY05_02325 PF01938 TRAM domain NIY05_02325 PF00919 Uncharacterized protein family UPF0004 NIY05_02325 PF04055 Radical SAM superfamily NIY05_02330 PF10145 Phage-related minor tail protein NIY05_02330 PF01464 Transglycosylase SLT domain NIY05_02330 PF01551 Peptidase family M23 NIY05_02340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIY05_02340 PF00056 lactate/malate dehydrogenase, NAD binding domain NIY05_02360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NIY05_02365 PF01066 CDP-alcohol phosphatidyltransferase NIY05_02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_02410 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_02415 PF17932 Tetracyclin repressor-like, C-terminal domain NIY05_02415 PF00440 Bacterial regulatory proteins, tetR family NIY05_02430 PF01039 Carboxyl transferase domain NIY05_02435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_02435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_02435 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_02445 PF00364 Biotin-requiring enzyme NIY05_02445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY05_02445 PF00289 Biotin carboxylase, N-terminal domain NIY05_02445 PF02785 Biotin carboxylase C-terminal domain NIY05_02455 PF04386 Stringent starvation protein B NIY05_02460 PF00043 Glutathione S-transferase, C-terminal domain NIY05_02460 PF13417 Glutathione S-transferase, N-terminal domain NIY05_02465 PF00380 Ribosomal protein S9/S16 NIY05_02470 PF00572 Ribosomal protein L13 NIY05_02475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NIY05_02480 PF00398 Ribosomal RNA adenine dimethylase NIY05_02485 PF00149 Calcineurin-like phosphoesterase NIY05_02505 PF16360 GTP-binding GTPase Middle Region NIY05_02505 PF13167 GTP-binding GTPase N-terminal NIY05_02505 PF01926 50S ribosome-binding GTPase NIY05_02515 PF13091 PLD-like domain NIY05_02520 PF10518 TAT (twin-arginine translocation) pathway signal sequence NIY05_02520 PF00149 Calcineurin-like phosphoesterase NIY05_02525 PF01389 OmpA-like transmembrane domain NIY05_02525 PF00691 OmpA family NIY05_02530 PF17152 Periplasmic sensor domain NIY05_02530 PF00990 Diguanylate cyclase, GGDEF domain NIY05_02565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY05_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_02575 PF00753 Metallo-beta-lactamase superfamily NIY05_02575 PF04273 Putative phosphatase (DUF442) NIY05_02580 PF00561 alpha/beta hydrolase fold NIY05_02585 PF00085 Thioredoxin NIY05_02590 PF03061 Thioesterase superfamily NIY05_02600 PF04461 Protein of unknown function (DUF520) NIY05_02610 PF01266 FAD dependent oxidoreductase NIY05_02610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIY05_02620 PF03795 YCII-related domain NIY05_02625 PF04279 Intracellular septation protein A NIY05_02630 PF02811 PHP domain NIY05_02635 PF01062 Bestrophin, RFP-TM, chloride channel NIY05_02640 PF04002 RadC-like JAB domain NIY05_02645 PF04127 DNA / pantothenate metabolism flavoprotein NIY05_02645 PF02441 Flavoprotein NIY05_02650 PF02355 Protein export membrane protein NIY05_02650 PF07549 SecD/SecF GG Motif NIY05_02655 PF02355 Protein export membrane protein NIY05_02655 PF13721 SecD export protein N-terminal TM region NIY05_02655 PF07549 SecD/SecF GG Motif NIY05_02660 PF02699 Preprotein translocase subunit NIY05_02665 PF01702 Queuine tRNA-ribosyltransferase NIY05_02680 PF02547 Queuosine biosynthesis protein NIY05_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_02690 PF00512 His Kinase A (phospho-acceptor) domain NIY05_02690 PF07689 KaiB domain NIY05_02695 PF08335 GlnD PII-uridylyltransferase NIY05_02695 PF03710 Glutamate-ammonia ligase adenylyltransferase NIY05_02700 PF01063 Amino-transferase class IV NIY05_02715 PF01522 Polysaccharide deacetylase NIY05_02720 PF00535 Glycosyl transferase family 2 NIY05_02725 PF13439 Glycosyltransferase Family 4 NIY05_02725 PF00534 Glycosyl transferases group 1 NIY05_02750 PF17101 Stealth protein CR1, conserved region 1 NIY05_02750 PF11380 Stealth protein CR2, conserved region 2 NIY05_02750 PF17102 Stealth protein CR3, conserved region 3 NIY05_02755 PF02938 GAD domain NIY05_02755 PF00152 tRNA synthetases class II (D, K and N) NIY05_02755 PF01336 OB-fold nucleic acid binding domain NIY05_02765 PF07715 TonB-dependent Receptor Plug Domain NIY05_02765 PF00593 TonB dependent receptor NIY05_02785 PF06146 Phosphate-starvation-inducible E NIY05_02790 PF02798 Glutathione S-transferase, N-terminal domain NIY05_02790 PF00043 Glutathione S-transferase, C-terminal domain NIY05_02795 PF03466 LysR substrate binding domain NIY05_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_02800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_02800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_02800 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_02800 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY05_02805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_02805 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_02805 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY05_02805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_02815 PF00512 His Kinase A (phospho-acceptor) domain NIY05_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_02815 PF00672 HAMP domain NIY05_02820 PF00072 Response regulator receiver domain NIY05_02820 PF00486 Transcriptional regulatory protein, C terminal NIY05_02825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NIY05_02845 PF01923 Cobalamin adenosyltransferase NIY05_02850 PF07715 TonB-dependent Receptor Plug Domain NIY05_02850 PF00593 TonB dependent receptor NIY05_02855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NIY05_02860 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_02885 PF00290 Tryptophan synthase alpha chain NIY05_02890 PF01039 Carboxyl transferase domain NIY05_02895 PF02875 Mur ligase family, glutamate ligase domain NIY05_02895 PF08245 Mur ligase middle domain NIY05_02910 PF00753 Metallo-beta-lactamase superfamily NIY05_02915 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIY05_02915 PF00578 AhpC/TSA family NIY05_02920 PF07517 SecA DEAD-like domain NIY05_02920 PF01043 SecA preprotein cross-linking domain NIY05_02920 PF02810 SEC-C motif NIY05_02920 PF07516 SecA Wing and Scaffold domain NIY05_02930 PF07690 Major Facilitator Superfamily NIY05_02930 PF00083 Sugar (and other) transporter NIY05_02935 PF03006 Haemolysin-III related NIY05_02960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY05_02960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY05_02960 PF00378 Enoyl-CoA hydratase/isomerase NIY05_02965 PF00108 Thiolase, N-terminal domain NIY05_02965 PF02803 Thiolase, C-terminal domain NIY05_02970 PF02311 AraC-like ligand binding domain NIY05_02970 PF12833 Helix-turn-helix domain NIY05_02975 PF02515 CoA-transferase family III NIY05_02980 PF04966 Carbohydrate-selective porin, OprB family NIY05_02985 PF01011 PQQ enzyme repeat NIY05_02990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY05_02990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY05_03000 PF00893 Small Multidrug Resistance protein NIY05_03010 PF00108 Thiolase, N-terminal domain NIY05_03010 PF02803 Thiolase, C-terminal domain NIY05_03020 PF00691 OmpA family NIY05_03020 PF13505 Outer membrane protein beta-barrel domain NIY05_03030 PF01139 tRNA-splicing ligase RtcB NIY05_03035 PF00324 Amino acid permease NIY05_03040 PF08468 Methyltransferase small domain N-terminal NIY05_03040 PF05175 Methyltransferase small domain NIY05_03045 PF00860 Permease family NIY05_03050 PF00679 Elongation factor G C-terminus NIY05_03050 PF03144 Elongation factor Tu domain 2 NIY05_03050 PF00009 Elongation factor Tu GTP binding domain NIY05_03055 PF01741 Large-conductance mechanosensitive channel, MscL NIY05_03070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NIY05_03070 PF06827 Zinc finger found in FPG and IleRS NIY05_03070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NIY05_03075 PF02245 Methylpurine-DNA glycosylase (MPG) NIY05_03095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY05_03110 PF13098 Thioredoxin-like domain NIY05_03110 PF10411 Disulfide bond isomerase protein N-terminus NIY05_03115 PF01571 Aminomethyltransferase folate-binding domain NIY05_03125 PF04343 Protein of unknown function, DUF488 NIY05_03130 PF08274 PhnA Zinc-Ribbon NIY05_03130 PF03831 PhnA domain NIY05_03135 PF07411 Domain of unknown function (DUF1508) NIY05_03140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY05_03140 PF04073 Aminoacyl-tRNA editing domain NIY05_03140 PF03129 Anticodon binding domain NIY05_03145 PF00873 AcrB/AcrD/AcrF family NIY05_03160 PF00072 Response regulator receiver domain NIY05_03165 PF00072 Response regulator receiver domain NIY05_03170 PF01584 CheW-like domain NIY05_03175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIY05_03175 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NIY05_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_03180 PF01584 CheW-like domain NIY05_03180 PF01627 Hpt domain NIY05_03180 PF00072 Response regulator receiver domain NIY05_03190 PF01546 Peptidase family M20/M25/M40 NIY05_03190 PF07687 Peptidase dimerisation domain NIY05_03195 PF08085 Entericidin EcnA/B family NIY05_03205 PF04304 Protein of unknown function (DUF454) NIY05_03210 PF03734 L,D-transpeptidase catalytic domain NIY05_03210 PF17969 L,D-transpeptidase C-terminal domain NIY05_03250 PF00175 Oxidoreductase NAD-binding domain NIY05_03250 PF00258 Flavodoxin NIY05_03250 PF00667 FAD binding domain NIY05_03260 PF12805 FUSC-like inner membrane protein yccS NIY05_03265 PF07690 Major Facilitator Superfamily NIY05_03270 PF00881 Nitroreductase family NIY05_03285 PF01235 Sodium:alanine symporter family NIY05_03290 PF01734 Patatin-like phospholipase NIY05_03295 PF13291 ACT domain NIY05_03295 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_03300 PF05992 SbmA/BacA-like family NIY05_03330 PF02637 GatB domain NIY05_03330 PF02934 GatB/GatE catalytic domain NIY05_03335 PF01425 Amidase NIY05_03340 PF02686 Glu-tRNAGln amidotransferase C subunit NIY05_03350 PF04085 rod shape-determining protein MreC NIY05_03355 PF04093 rod shape-determining protein MreD NIY05_03360 PF02545 Maf-like protein NIY05_03365 PF10150 Ribonuclease E/G family NIY05_03365 PF00575 S1 RNA binding domain NIY05_03375 PF06974 Protein of unknown function (DUF1298) NIY05_03375 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NIY05_03380 PF01507 Phosphoadenosine phosphosulfate reductase family NIY05_03395 PF02525 Flavodoxin-like fold NIY05_03415 PF02673 Bacitracin resistance protein BacA NIY05_03420 PF06719 AraC-type transcriptional regulator N-terminus NIY05_03420 PF12833 Helix-turn-helix domain NIY05_03425 PF00698 Acyl transferase domain NIY05_03425 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_03425 PF08990 Erythronolide synthase docking NIY05_03425 PF09277 Erythronolide synthase, docking NIY05_03425 PF16197 Ketoacyl-synthetase C-terminal extension NIY05_03425 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_03425 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_03425 PF08659 KR domain NIY05_03425 PF00550 Phosphopantetheine attachment site NIY05_03425 PF14765 Polyketide synthase dehydratase NIY05_03430 PF01965 DJ-1/PfpI family NIY05_03440 PF00324 Amino acid permease NIY05_03445 PF04303 PrpF protein NIY05_03450 PF00348 Polyprenyl synthetase NIY05_03455 PF04237 YjbR NIY05_03460 PF01145 SPFH domain / Band 7 family NIY05_03470 PF01734 Patatin-like phospholipase NIY05_03490 PF08019 Phosphoethanolamine transferase EptA/EptB NIY05_03490 PF00884 Sulfatase NIY05_03495 PF00072 Response regulator receiver domain NIY05_03495 PF00486 Transcriptional regulatory protein, C terminal NIY05_03500 PF08521 Two-component sensor kinase N-terminal NIY05_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_03500 PF00512 His Kinase A (phospho-acceptor) domain NIY05_03510 PF00909 Ammonium Transporter Family NIY05_03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_03515 PF03466 LysR substrate binding domain NIY05_03535 PF08264 Anticodon-binding domain of tRNA NIY05_03535 PF00133 tRNA synthetases class I (I, L, M and V) NIY05_03535 PF10458 Valyl tRNA synthetase tRNA binding arm NIY05_03555 PF01906 Putative heavy-metal-binding NIY05_03560 PF01906 Putative heavy-metal-binding NIY05_03565 PF02321 Outer membrane efflux protein NIY05_03570 PF00873 AcrB/AcrD/AcrF family NIY05_03575 PF00529 HlyD membrane-fusion protein of T1SS NIY05_03575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_03580 PF01569 PAP2 superfamily NIY05_03590 PF00348 Polyprenyl synthetase NIY05_03600 PF00829 Ribosomal prokaryotic L21 protein NIY05_03605 PF01016 Ribosomal L27 protein NIY05_03610 PF03548 Outer membrane lipoprotein carrier protein LolA NIY05_03620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY05_03620 PF02403 Seryl-tRNA synthetase N-terminal domain NIY05_03625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIY05_03625 PF14824 Sirohaem biosynthesis protein central NIY05_03625 PF10414 Sirohaem synthase dimerisation region NIY05_03630 PF00588 SpoU rRNA Methylase family NIY05_03635 PF01638 HxlR-like helix-turn-helix NIY05_03640 PF03358 NADPH-dependent FMN reductase NIY05_03645 PF13520 Amino acid permease NIY05_03650 PF00465 Iron-containing alcohol dehydrogenase NIY05_03660 PF03099 Biotin/lipoate A/B protein ligase family NIY05_03665 PF04359 Protein of unknown function (DUF493) NIY05_03670 PF04546 Sigma-70, non-essential region NIY05_03670 PF03979 Sigma-70 factor, region 1.1 NIY05_03670 PF00140 Sigma-70 factor, region 1.2 NIY05_03670 PF04542 Sigma-70 region 2 NIY05_03670 PF04539 Sigma-70 region 3 NIY05_03670 PF04545 Sigma-70, region 4 NIY05_03690 PF17773 UPF0176 acylphosphatase like domain NIY05_03690 PF00581 Rhodanese-like domain NIY05_03700 PF00285 Citrate synthase, C-terminal domain NIY05_03705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIY05_03710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIY05_03715 PF00890 FAD binding domain NIY05_03715 PF02910 Fumarate reductase flavoprotein C-term NIY05_03720 PF13085 2Fe-2S iron-sulfur cluster binding domain NIY05_03735 PF16078 2-oxoglutarate dehydrogenase N-terminus NIY05_03735 PF00676 Dehydrogenase E1 component NIY05_03735 PF16870 2-oxoglutarate dehydrogenase C-terminal NIY05_03735 PF02779 Transketolase, pyrimidine binding domain NIY05_03740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY05_03740 PF00364 Biotin-requiring enzyme NIY05_03740 PF02817 e3 binding domain NIY05_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_03745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY05_03750 PF08442 ATP-grasp domain NIY05_03750 PF00549 CoA-ligase NIY05_03755 PF00549 CoA-ligase NIY05_03755 PF02629 CoA binding domain NIY05_03760 PF00579 tRNA synthetases class I (W and Y) NIY05_03765 PF05661 Protein of unknown function (DUF808) NIY05_03770 PF04228 Putative neutral zinc metallopeptidase NIY05_03775 PF00999 Sodium/hydrogen exchanger family NIY05_03790 PF09587 Bacterial capsule synthesis protein PGA_cap NIY05_03800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY05_03805 PF00582 Universal stress protein family NIY05_03810 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_03815 PF03449 Transcription elongation factor, N-terminal NIY05_03815 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY05_03820 PF02142 MGS-like domain NIY05_03820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY05_03820 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NIY05_03825 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NIY05_03825 PF00117 Glutamine amidotransferase class-I NIY05_03840 PF01985 CRS1 / YhbY (CRM) domain NIY05_03845 PF01728 FtsJ-like methyltransferase NIY05_03850 PF17862 AAA+ lid domain NIY05_03850 PF06480 FtsH Extracellular NIY05_03850 PF01434 Peptidase family M41 NIY05_03850 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_03855 PF00809 Pterin binding enzyme NIY05_03875 PF09423 PhoD-like phosphatase NIY05_03875 PF16655 PhoD-like phosphatase, N-terminal domain NIY05_03890 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIY05_03890 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIY05_03905 PF00083 Sugar (and other) transporter NIY05_03910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NIY05_03910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NIY05_03915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NIY05_03915 PF01266 FAD dependent oxidoreductase NIY05_03920 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NIY05_03920 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NIY05_03925 PF00781 Diacylglycerol kinase catalytic domain NIY05_03930 PF00149 Calcineurin-like phosphoesterase NIY05_03940 PF00166 Chaperonin 10 Kd subunit NIY05_03945 PF00118 TCP-1/cpn60 chaperonin family NIY05_03950 PF01219 Prokaryotic diacylglycerol kinase NIY05_03960 PF03009 Glycerophosphoryl diester phosphodiesterase family NIY05_03965 PF00873 AcrB/AcrD/AcrF family NIY05_03975 PF01435 Peptidase family M48 NIY05_03980 PF01464 Transglycosylase SLT domain NIY05_03985 PF01171 PP-loop family NIY05_03995 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY05_03995 PF01464 Transglycosylase SLT domain NIY05_04000 PF03449 Transcription elongation factor, N-terminal NIY05_04000 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY05_04015 PF00501 AMP-binding enzyme NIY05_04015 PF00668 Condensation domain NIY05_04015 PF13193 AMP-binding enzyme C-terminal domain NIY05_04015 PF00550 Phosphopantetheine attachment site NIY05_04015 PF00975 Thioesterase domain NIY05_04045 PF00881 Nitroreductase family NIY05_04060 PF02595 Glycerate kinase family NIY05_04065 PF00384 Molybdopterin oxidoreductase NIY05_04070 PF02634 FdhD/NarQ family NIY05_04075 PF06803 Protein of unknown function (DUF1232) NIY05_04080 PF11890 Domain of unknown function (DUF3410) NIY05_04080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY05_04080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY05_04085 PF00152 tRNA synthetases class II (D, K and N) NIY05_04095 PF18073 Rubredoxin metal binding domain NIY05_04100 PF00324 Amino acid permease NIY05_04110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIY05_04110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIY05_04115 PF01678 Diaminopimelate epimerase NIY05_04120 PF01810 LysE type translocator NIY05_04125 PF02899 Phage integrase, N-terminal SAM-like domain NIY05_04125 PF00589 Phage integrase family NIY05_04130 PF01012 Electron transfer flavoprotein domain NIY05_04135 PF01012 Electron transfer flavoprotein domain NIY05_04135 PF00766 Electron transfer flavoprotein FAD-binding domain NIY05_04140 PF00521 DNA gyrase/topoisomerase IV, subunit A NIY05_04140 PF03989 DNA gyrase C-terminal domain, beta-propeller NIY05_04155 PF00535 Glycosyl transferase family 2 NIY05_04175 PF13533 Biotin-lipoyl like NIY05_04185 PF00266 Aminotransferase class-V NIY05_04200 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NIY05_04210 PF12704 MacB-like periplasmic core domain NIY05_04210 PF02687 FtsX-like permease family NIY05_04215 PF00005 ABC transporter NIY05_04220 PF13567 Domain of unknown function (DUF4131) NIY05_04220 PF00753 Metallo-beta-lactamase superfamily NIY05_04220 PF03772 Competence protein NIY05_04230 PF06965 Na+/H+ antiporter 1 NIY05_04230 PF01343 Peptidase family S49 NIY05_04235 PF12697 Alpha/beta hydrolase family NIY05_04240 PF00551 Formyl transferase NIY05_04245 PF00586 AIR synthase related protein, N-terminal domain NIY05_04245 PF02769 AIR synthase related protein, C-terminal domain NIY05_04250 PF01594 AI-2E family transporter NIY05_04255 PF00308 Bacterial dnaA protein NIY05_04255 PF08299 Bacterial dnaA protein helix-turn-helix NIY05_04255 PF11638 DnaA N-terminal domain NIY05_04285 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIY05_04285 PF00588 SpoU rRNA Methylase family NIY05_04290 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NIY05_04300 PF00691 OmpA family NIY05_04305 PF07676 WD40-like Beta Propeller Repeat NIY05_04305 PF04052 TolB amino-terminal domain NIY05_04315 PF02472 Biopolymer transport protein ExbD/TolR NIY05_04320 PF01618 MotA/TolQ/ExbB proton channel family NIY05_04325 PF03061 Thioesterase superfamily NIY05_04330 PF07687 Peptidase dimerisation domain NIY05_04330 PF01546 Peptidase family M20/M25/M40 NIY05_04335 PF17864 RuvB AAA lid domain NIY05_04335 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIY05_04335 PF05491 RuvB C-terminal winged helix domain NIY05_04340 PF01330 RuvA N terminal domain NIY05_04340 PF07499 RuvA, C-terminal domain NIY05_04345 PF01966 HD domain NIY05_04350 PF02769 AIR synthase related protein, C-terminal domain NIY05_04350 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NIY05_04350 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NIY05_04355 PF07690 Major Facilitator Superfamily NIY05_04365 PF01784 NIF3 (NGG1p interacting factor 3) NIY05_04370 PF00378 Enoyl-CoA hydratase/isomerase NIY05_04375 PF00293 NUDIX domain NIY05_04375 PF01467 Cytidylyltransferase-like NIY05_04385 PF00578 AhpC/TSA family NIY05_04400 PF06508 Queuosine biosynthesis protein QueC NIY05_04410 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_04410 PF14602 Hexapeptide repeat of succinyl-transferase NIY05_04410 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NIY05_04420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_04420 PF03466 LysR substrate binding domain NIY05_04425 PF12857 TOBE-like domain NIY05_04425 PF00005 ABC transporter NIY05_04430 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_04435 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_04450 PF01063 Amino-transferase class IV NIY05_04455 PF02618 YceG-like family NIY05_04460 PF02223 Thymidylate kinase NIY05_04470 PF00890 FAD binding domain NIY05_04470 PF02910 Fumarate reductase flavoprotein C-term NIY05_04475 PF13180 PDZ domain NIY05_04485 PF06421 GTP-binding protein LepA C-terminus NIY05_04485 PF03144 Elongation factor Tu domain 2 NIY05_04485 PF00009 Elongation factor Tu GTP binding domain NIY05_04485 PF00679 Elongation factor G C-terminus NIY05_04490 PF10502 Signal peptidase, peptidase S26 NIY05_04500 PF00035 Double-stranded RNA binding motif NIY05_04500 PF14622 Ribonuclease-III-like NIY05_04505 PF07650 KH domain NIY05_04505 PF01926 50S ribosome-binding GTPase NIY05_04515 PF02565 Recombination protein O C terminal NIY05_04515 PF11967 Recombination protein O N terminal NIY05_04520 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NIY05_04525 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NIY05_04530 PF00106 short chain dehydrogenase NIY05_04560 PF00155 Aminotransferase class I and II NIY05_04570 PF17151 Periplasmic sensor domain NIY05_04570 PF00990 Diguanylate cyclase, GGDEF domain NIY05_04580 PF00271 Helicase conserved C-terminal domain NIY05_04580 PF04851 Type III restriction enzyme, res subunit NIY05_04580 PF02151 UvrB/uvrC motif NIY05_04580 PF12344 Ultra-violet resistance protein B NIY05_04580 PF17757 UvrB interaction domain NIY05_04590 PF00892 EamA-like transporter family NIY05_04595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIY05_04595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIY05_04610 PF01018 GTP1/OBG NIY05_04610 PF01926 50S ribosome-binding GTPase NIY05_04615 PF00696 Amino acid kinase family NIY05_04615 PF01472 PUA domain NIY05_04625 PF07759 Protein of unknown function (DUF1615) NIY05_04630 PF01207 Dihydrouridine synthase (Dus) NIY05_04635 PF03060 Nitronate monooxygenase NIY05_04650 PF02350 UDP-N-acetylglucosamine 2-epimerase NIY05_04680 PF00875 DNA photolyase NIY05_04680 PF03441 FAD binding domain of DNA photolyase NIY05_04685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY05_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_04695 PF07943 Penicillin-binding protein 5, C-terminal domain NIY05_04695 PF00768 D-alanyl-D-alanine carboxypeptidase NIY05_04705 PF03971 Monomeric isocitrate dehydrogenase NIY05_04710 PF00849 RNA pseudouridylate synthase NIY05_04715 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY05_04735 PF06779 Uncharacterised MFS-type transporter YbfB NIY05_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_04740 PF03466 LysR substrate binding domain NIY05_04745 PF00375 Sodium:dicarboxylate symporter family NIY05_04750 PF02567 Phenazine biosynthesis-like protein NIY05_04755 PF00675 Insulinase (Peptidase family M16) NIY05_04755 PF05193 Peptidase M16 inactive domain NIY05_04780 PF02581 Thiamine monophosphate synthase NIY05_04785 PF00202 Aminotransferase class-III NIY05_04795 PF00849 RNA pseudouridylate synthase NIY05_04800 PF18337 RapA N-terminal Tudor like domain NIY05_04800 PF18339 RapA N-terminal Tudor like domain 1 NIY05_04800 PF00176 SNF2 family N-terminal domain NIY05_04800 PF00271 Helicase conserved C-terminal domain NIY05_04800 PF12137 RNA polymerase recycling family C-terminal NIY05_04810 PF00440 Bacterial regulatory proteins, tetR family NIY05_04815 PF00970 Oxidoreductase FAD-binding domain NIY05_04815 PF00175 Oxidoreductase NAD-binding domain NIY05_04815 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_04820 PF00487 Fatty acid desaturase NIY05_04830 PF17754 MftR C-terminal domain NIY05_04830 PF00440 Bacterial regulatory proteins, tetR family NIY05_04840 PF00202 Aminotransferase class-III NIY05_04845 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIY05_04850 PF00171 Aldehyde dehydrogenase family NIY05_04855 PF01037 Lrp/AsnC ligand binding domain NIY05_04860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY05_04860 PF00205 Thiamine pyrophosphate enzyme, central domain NIY05_04860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY05_04865 PF00324 Amino acid permease NIY05_04870 PF12849 PBP superfamily domain NIY05_04875 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_04880 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_04885 PF00005 ABC transporter NIY05_04890 PF01343 Peptidase family S49 NIY05_04890 PF08496 Peptidase family S49 N-terminal NIY05_04905 PF08328 Adenylosuccinate lyase C-terminal NIY05_04905 PF00206 Lyase NIY05_04910 PF04356 Protein of unknown function (DUF489) NIY05_04920 PF13344 Haloacid dehalogenase-like hydrolase NIY05_04920 PF00293 NUDIX domain NIY05_04925 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_04930 PF07943 Penicillin-binding protein 5, C-terminal domain NIY05_04930 PF00768 D-alanyl-D-alanine carboxypeptidase NIY05_04945 PF01975 Survival protein SurE NIY05_04950 PF01551 Peptidase family M23 NIY05_04950 PF01476 LysM domain NIY05_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_04955 PF03466 LysR substrate binding domain NIY05_04960 PF13654 AAA domain NIY05_04960 PF05362 Lon protease (S16) C-terminal proteolytic domain NIY05_04965 PF07690 Major Facilitator Superfamily NIY05_04970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY05_04975 PF13593 SBF-like CPA transporter family (DUF4137) NIY05_04980 PF01197 Ribosomal protein L31 NIY05_04995 PF04055 Radical SAM superfamily NIY05_05000 PF01132 Elongation factor P (EF-P) OB domain NIY05_05000 PF08207 Elongation factor P (EF-P) KOW-like domain NIY05_05000 PF09285 Elongation factor P, C-terminal NIY05_05005 PF13722 5TM C-terminal transporter carbon starvation CstA NIY05_05005 PF02554 Carbon starvation protein CstA NIY05_05010 PF04328 Selenoprotein, putative NIY05_05045 PF17853 GGDEF-like domain NIY05_05045 PF13556 PucR C-terminal helix-turn-helix domain NIY05_05045 PF06018 CodY GAF-like domain NIY05_05060 PF00171 Aldehyde dehydrogenase family NIY05_05065 PF00324 Amino acid permease NIY05_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_05070 PF03466 LysR substrate binding domain NIY05_05075 PF02028 BCCT, betaine/carnitine/choline family transporter NIY05_05080 PF02028 BCCT, betaine/carnitine/choline family transporter NIY05_05085 PF00355 Rieske [2Fe-2S] domain NIY05_05085 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY05_05090 PF00171 Aldehyde dehydrogenase family NIY05_05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_05100 PF18113 Rubredoxin binding C-terminal domain NIY05_05105 PF01266 FAD dependent oxidoreductase NIY05_05105 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIY05_05125 PF00892 EamA-like transporter family NIY05_05135 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIY05_05140 PF00083 Sugar (and other) transporter NIY05_05145 PF13378 Enolase C-terminal domain-like NIY05_05145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIY05_05150 PF00550 Phosphopantetheine attachment site NIY05_05150 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_05150 PF08990 Erythronolide synthase docking NIY05_05150 PF09277 Erythronolide synthase, docking NIY05_05150 PF16197 Ketoacyl-synthetase C-terminal extension NIY05_05150 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_05150 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_05150 PF08659 KR domain NIY05_05150 PF00698 Acyl transferase domain NIY05_05150 PF14765 Polyketide synthase dehydratase NIY05_05155 PF00440 Bacterial regulatory proteins, tetR family NIY05_05175 PF02678 Pirin NIY05_05175 PF17954 Quercetinase C-terminal cupin domain NIY05_05185 PF13309 HTH domain NIY05_05185 PF08348 YheO-like PAS domain NIY05_05195 PF00550 Phosphopantetheine attachment site NIY05_05195 PF00668 Condensation domain NIY05_05195 PF00501 AMP-binding enzyme NIY05_05195 PF13193 AMP-binding enzyme C-terminal domain NIY05_05200 PF00668 Condensation domain NIY05_05200 PF00550 Phosphopantetheine attachment site NIY05_05200 PF00975 Thioesterase domain NIY05_05200 PF00501 AMP-binding enzyme NIY05_05200 PF13193 AMP-binding enzyme C-terminal domain NIY05_05205 PF01032 FecCD transport family NIY05_05210 PF01032 FecCD transport family NIY05_05215 PF00005 ABC transporter NIY05_05220 PF01497 Periplasmic binding protein NIY05_05225 PF07715 TonB-dependent Receptor Plug Domain NIY05_05225 PF00593 TonB dependent receptor NIY05_05230 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY05_05235 PF00501 AMP-binding enzyme NIY05_05235 PF00668 Condensation domain NIY05_05235 PF00550 Phosphopantetheine attachment site NIY05_05240 PF00501 AMP-binding enzyme NIY05_05240 PF13193 AMP-binding enzyme C-terminal domain NIY05_05245 PF00857 Isochorismatase family NIY05_05245 PF00550 Phosphopantetheine attachment site NIY05_05250 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIY05_05260 PF00005 ABC transporter NIY05_05265 PF00005 ABC transporter NIY05_05270 PF00975 Thioesterase domain NIY05_05280 PF00425 chorismate binding enzyme NIY05_05290 PF01208 Uroporphyrinogen decarboxylase (URO-D) NIY05_05295 PF05675 Protein of unknown function (DUF817) NIY05_05310 PF00144 Beta-lactamase NIY05_05320 PF01227 GTP cyclohydrolase I NIY05_05325 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_05325 PF01799 [2Fe-2S] binding domain NIY05_05330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NIY05_05330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NIY05_05345 PF00218 Indole-3-glycerol phosphate synthase NIY05_05350 PF02885 Glycosyl transferase family, helical bundle domain NIY05_05350 PF00591 Glycosyl transferase family, a/b domain NIY05_05355 PF07715 TonB-dependent Receptor Plug Domain NIY05_05355 PF00593 TonB dependent receptor NIY05_05360 PF11838 ERAP1-like C-terminal domain NIY05_05360 PF01433 Peptidase family M1 domain NIY05_05365 PF00117 Glutamine amidotransferase class-I NIY05_05375 PF00854 POT family NIY05_05380 PF03951 Glutamine synthetase, beta-Grasp domain NIY05_05380 PF00120 Glutamine synthetase, catalytic domain NIY05_05385 PF04345 Chorismate lyase NIY05_05390 PF01040 UbiA prenyltransferase family NIY05_05425 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NIY05_05425 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NIY05_05430 PF01784 NIF3 (NGG1p interacting factor 3) NIY05_05435 PF13180 PDZ domain NIY05_05440 PF01743 Poly A polymerase head domain NIY05_05440 PF12627 Probable RNA and SrmB- binding site of polymerase A NIY05_05445 PF00390 Malic enzyme, N-terminal domain NIY05_05445 PF03949 Malic enzyme, NAD binding domain NIY05_05445 PF01515 Phosphate acetyl/butaryl transferase NIY05_05450 PF00563 EAL domain NIY05_05450 PF00990 Diguanylate cyclase, GGDEF domain NIY05_05450 PF03707 Bacterial signalling protein N terminal repeat NIY05_05455 PF04452 RNA methyltransferase NIY05_05460 PF02219 Methylenetetrahydrofolate reductase NIY05_05465 PF05221 S-adenosyl-L-homocysteine hydrolase NIY05_05465 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIY05_05480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_05480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_05480 PF09317 Domain of unknown function (DUF1974) NIY05_05485 PF04055 Radical SAM superfamily NIY05_05490 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_05490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY05_05500 PF07690 Major Facilitator Superfamily NIY05_05510 PF00557 Metallopeptidase family M24 NIY05_05515 PF00318 Ribosomal protein S2 NIY05_05520 PF00889 Elongation factor TS NIY05_05530 PF12833 Helix-turn-helix domain NIY05_05550 PF05036 Sporulation related domain NIY05_05550 PF03330 Lytic transglycolase NIY05_05555 PF13406 Transglycosylase SLT domain NIY05_05560 PF01098 Cell cycle protein NIY05_05570 PF14489 QueF-like protein NIY05_05570 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NIY05_05575 PF01061 ABC-2 type transporter NIY05_05580 PF00005 ABC transporter NIY05_05610 PF00464 Serine hydroxymethyltransferase NIY05_05615 PF02321 Outer membrane efflux protein NIY05_05620 PF00873 AcrB/AcrD/AcrF family NIY05_05625 PF13533 Biotin-lipoyl like NIY05_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_05630 PF03466 LysR substrate binding domain NIY05_05635 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY05_05640 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_05645 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_05650 PF00005 ABC transporter NIY05_05655 PF00893 Small Multidrug Resistance protein NIY05_05660 PF00037 4Fe-4S binding domain NIY05_05665 PF01136 Peptidase family U32 NIY05_05665 PF16325 Peptidase family U32 C-terminal domain NIY05_05670 PF00155 Aminotransferase class I and II NIY05_05670 PF00392 Bacterial regulatory proteins, gntR family NIY05_05675 PF02567 Phenazine biosynthesis-like protein NIY05_05680 PF00970 Oxidoreductase FAD-binding domain NIY05_05680 PF00175 Oxidoreductase NAD-binding domain NIY05_05685 PF01980 tRNA-methyltransferase O NIY05_05685 PF18389 TrmO C-terminal domain NIY05_05695 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIY05_05695 PF00437 Type II/IV secretion system protein NIY05_05705 PF00486 Transcriptional regulatory protein, C terminal NIY05_05705 PF00072 Response regulator receiver domain NIY05_05710 PF00512 His Kinase A (phospho-acceptor) domain NIY05_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_05710 PF08521 Two-component sensor kinase N-terminal NIY05_05720 PF00293 NUDIX domain NIY05_05730 PF00905 Penicillin binding protein transpeptidase domain NIY05_05730 PF00912 Transglycosylase NIY05_05730 PF14814 Bifunctional transglycosylase second domain NIY05_05735 PF01513 ATP-NAD kinase NIY05_05740 PF07023 Protein of unknown function (DUF1315) NIY05_05745 PF02885 Glycosyl transferase family, helical bundle domain NIY05_05745 PF00591 Glycosyl transferase family, a/b domain NIY05_05750 PF00375 Sodium:dicarboxylate symporter family NIY05_05755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_05755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_05755 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_05760 PF00756 Putative esterase NIY05_05765 PF01842 ACT domain NIY05_05765 PF01817 Chorismate mutase type II NIY05_05765 PF00800 Prephenate dehydratase NIY05_05770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIY05_05780 PF07687 Peptidase dimerisation domain NIY05_05780 PF01546 Peptidase family M20/M25/M40 NIY05_05785 PF12706 Beta-lactamase superfamily domain NIY05_05795 PF03883 Peroxide stress protein YaaA NIY05_05805 PF05690 Thiazole biosynthesis protein ThiG NIY05_05815 PF04241 Protein of unknown function (DUF423) NIY05_05820 PF04545 Sigma-70, region 4 NIY05_05820 PF04542 Sigma-70 region 2 NIY05_05820 PF00140 Sigma-70 factor, region 1.2 NIY05_05835 PF00313 'Cold-shock' DNA-binding domain NIY05_05840 PF00270 DEAD/DEAH box helicase NIY05_05840 PF00271 Helicase conserved C-terminal domain NIY05_05850 PF00881 Nitroreductase family NIY05_05855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NIY05_05855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NIY05_05865 PF00589 Phage integrase family NIY05_05960 PF01555 DNA methylase NIY05_06195 PF01180 Dihydroorotate dehydrogenase NIY05_06200 PF02674 Colicin V production protein NIY05_06205 PF00156 Phosphoribosyl transferase domain NIY05_06220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY05_06220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY05_06225 PF01435 Peptidase family M48 NIY05_06230 PF09424 Yqey-like protein NIY05_06235 PF01165 Ribosomal protein S21 NIY05_06240 PF00814 Glycoprotease family NIY05_06260 PF00069 Protein kinase domain NIY05_06285 PF03466 LysR substrate binding domain NIY05_06285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_06290 PF00202 Aminotransferase class-III NIY05_06295 PF00171 Aldehyde dehydrogenase family NIY05_06300 PF00324 Amino acid permease NIY05_06330 PF04076 Bacterial OB fold (BOF) protein NIY05_06355 PF00561 alpha/beta hydrolase fold NIY05_06360 PF03616 Sodium/glutamate symporter NIY05_06370 PF07729 FCD domain NIY05_06370 PF00392 Bacterial regulatory proteins, gntR family NIY05_06420 PF00083 Sugar (and other) transporter NIY05_06420 PF08946 Osmosensory transporter coiled coil NIY05_06445 PF00155 Aminotransferase class I and II NIY05_06450 PF06826 Predicted Permease Membrane Region NIY05_06450 PF02080 TrkA-C domain NIY05_06460 PF04403 Paraquat-inducible protein A NIY05_06465 PF02470 MlaD protein NIY05_06475 PF01177 Asp/Glu/Hydantoin racemase NIY05_06480 PF00892 EamA-like transporter family NIY05_06485 PF07995 Glucose / Sorbosone dehydrogenase NIY05_06495 PF13610 DDE domain NIY05_06505 PF01636 Phosphotransferase enzyme family NIY05_06510 PF13610 DDE domain NIY05_06525 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_06535 PF00893 Small Multidrug Resistance protein NIY05_06540 PF00809 Pterin binding enzyme NIY05_06555 PF07091 Ribosomal RNA methyltransferase (FmrO) NIY05_06570 PF12848 ABC transporter NIY05_06570 PF00005 ABC transporter NIY05_06575 PF01636 Phosphotransferase enzyme family NIY05_06585 PF13817 IS66 C-terminal element NIY05_06585 PF03050 Transposase IS66 family NIY05_06585 PF13005 zinc-finger binding domain of transposase IS66 NIY05_06585 PF13007 Transposase C of IS166 homeodomain NIY05_06590 PF13610 DDE domain NIY05_06605 PF00440 Bacterial regulatory proteins, tetR family NIY05_06605 PF17932 Tetracyclin repressor-like, C-terminal domain NIY05_06610 PF17954 Quercetinase C-terminal cupin domain NIY05_06610 PF02678 Pirin NIY05_06620 PF00106 short chain dehydrogenase NIY05_06625 PF00743 Flavin-binding monooxygenase-like NIY05_06635 PF00860 Permease family NIY05_06640 PF00962 Adenosine/AMP deaminase NIY05_06645 PF01292 Prokaryotic cytochrome b561 NIY05_06655 PF01351 Ribonuclease HII NIY05_06660 PF02599 Global regulator protein family NIY05_06665 PF00696 Amino acid kinase family NIY05_06665 PF01842 ACT domain NIY05_06665 PF13840 ACT domain NIY05_06670 PF02272 DHHA1 domain NIY05_06670 PF01411 tRNA synthetases class II (A) NIY05_06670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIY05_06675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIY05_06675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIY05_06680 PF13393 Histidyl-tRNA synthetase NIY05_06685 PF00709 Adenylosuccinate synthetase NIY05_06700 PF00248 Aldo/keto reductase family NIY05_06710 PF00027 Cyclic nucleotide-binding domain NIY05_06710 PF13545 Crp-like helix-turn-helix domain NIY05_06720 PF02566 OsmC-like protein NIY05_06735 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_06735 PF07724 AAA domain (Cdc48 subfamily) NIY05_06735 PF17871 AAA lid domain NIY05_06735 PF10431 C-terminal, D2-small domain, of ClpB protein NIY05_06735 PF02861 Clp amino terminal domain, pathogenicity island component NIY05_06750 PF01170 Putative RNA methylase family UPF0020 NIY05_06750 PF10672 S-adenosylmethionine-dependent methyltransferase NIY05_06750 PF02926 THUMP domain NIY05_06760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIY05_06760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIY05_06765 PF01979 Amidohydrolase family NIY05_06770 PF13488 Glycine zipper NIY05_06770 PF00691 OmpA family NIY05_06780 PF00043 Glutathione S-transferase, C-terminal domain NIY05_06780 PF13417 Glutathione S-transferase, N-terminal domain NIY05_06785 PF02390 Putative methyltransferase NIY05_06795 PF00043 Glutathione S-transferase, C-terminal domain NIY05_06795 PF02798 Glutathione S-transferase, N-terminal domain NIY05_06805 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_06805 PF13192 Thioredoxin domain NIY05_06825 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIY05_06825 PF00578 AhpC/TSA family NIY05_06830 PF00270 DEAD/DEAH box helicase NIY05_06830 PF11898 Domain of unknown function (DUF3418) NIY05_06830 PF04408 Helicase associated domain (HA2) NIY05_06830 PF00271 Helicase conserved C-terminal domain NIY05_06830 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NIY05_06835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIY05_06835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIY05_06845 PF07690 Major Facilitator Superfamily NIY05_06850 PF03594 Benzoate membrane transport protein NIY05_06855 PF00106 short chain dehydrogenase NIY05_06860 PF00175 Oxidoreductase NAD-binding domain NIY05_06860 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_06860 PF00970 Oxidoreductase FAD-binding domain NIY05_06865 PF00866 Ring hydroxylating beta subunit NIY05_06870 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY05_06870 PF00355 Rieske [2Fe-2S] domain NIY05_06880 PF03466 LysR substrate binding domain NIY05_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_06890 PF00403 Heavy-metal-associated domain NIY05_06895 PF09278 MerR, DNA binding NIY05_06895 PF00376 MerR family regulatory protein NIY05_06930 PF02601 Exonuclease VII, large subunit NIY05_06930 PF13742 OB-fold nucleic acid binding domain NIY05_06960 PF01810 LysE type translocator NIY05_06965 PF00313 'Cold-shock' DNA-binding domain NIY05_06975 PF03807 NADP oxidoreductase coenzyme F420-dependent NIY05_06975 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIY05_07000 PF07690 Major Facilitator Superfamily NIY05_07005 PF01638 HxlR-like helix-turn-helix NIY05_07030 PF01406 tRNA synthetases class I (C) catalytic domain NIY05_07030 PF09190 DALR domain NIY05_07035 PF00571 CBS domain NIY05_07035 PF01380 SIS domain NIY05_07050 PF03968 OstA-like protein NIY05_07055 PF12399 Branched-chain amino acid ATP-binding cassette transporter NIY05_07055 PF00005 ABC transporter NIY05_07060 PF02321 Outer membrane efflux protein NIY05_07065 PF00005 ABC transporter NIY05_07065 PF00664 ABC transporter transmembrane region NIY05_07065 PF03412 Peptidase C39 family NIY05_07075 PF01205 Uncharacterized protein family UPF0029 NIY05_07080 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_07090 PF01596 O-methyltransferase NIY05_07100 PF11953 Domain of unknown function (DUF3470) NIY05_07100 PF00037 4Fe-4S binding domain NIY05_07110 PF05190 MutS family domain IV NIY05_07110 PF00488 MutS domain V NIY05_07110 PF05192 MutS domain III NIY05_07110 PF05188 MutS domain II NIY05_07110 PF01624 MutS domain I NIY05_07115 PF01037 Lrp/AsnC ligand binding domain NIY05_07120 PF00892 EamA-like transporter family NIY05_07125 PF00563 EAL domain NIY05_07125 PF03707 Bacterial signalling protein N terminal repeat NIY05_07125 PF00990 Diguanylate cyclase, GGDEF domain NIY05_07130 PF03279 Bacterial lipid A biosynthesis acyltransferase NIY05_07145 PF07690 Major Facilitator Superfamily NIY05_07165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY05_07165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY05_07185 PF13419 Haloacid dehalogenase-like hydrolase NIY05_07195 PF04717 Type VI secretion system, phage-baseplate injector NIY05_07195 PF13296 Putative type VI secretion system Rhs element Vgr NIY05_07195 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY05_07200 PF03527 RHS protein NIY05_07200 PF05593 RHS Repeat NIY05_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_07215 PF03466 LysR substrate binding domain NIY05_07220 PF01566 Natural resistance-associated macrophage protein NIY05_07225 PF03746 LamB/YcsF family NIY05_07230 PF07286 Protein of unknown function (DUF1445) NIY05_07240 PF00364 Biotin-requiring enzyme NIY05_07240 PF00289 Biotin carboxylase, N-terminal domain NIY05_07240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY05_07240 PF02785 Biotin carboxylase C-terminal domain NIY05_07245 PF00654 Voltage gated chloride channel NIY05_07265 PF00440 Bacterial regulatory proteins, tetR family NIY05_07275 PF00107 Zinc-binding dehydrogenase NIY05_07275 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_07275 PF13823 Alcohol dehydrogenase GroES-associated NIY05_07290 PF00289 Biotin carboxylase, N-terminal domain NIY05_07290 PF02785 Biotin carboxylase C-terminal domain NIY05_07290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY05_07295 PF02525 Flavodoxin-like fold NIY05_07315 PF01402 Ribbon-helix-helix protein, copG family NIY05_07315 PF08753 NikR C terminal nickel binding domain NIY05_07320 PF01425 Amidase NIY05_07325 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY05_07330 PF00005 ABC transporter NIY05_07355 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIY05_07370 PF05947 Type VI secretion system, TssF NIY05_07385 PF06744 Type VI secretion protein IcmF C-terminal NIY05_07385 PF14331 ImcF-related N-terminal domain NIY05_07385 PF06761 Intracellular multiplication and human macrophage-killing NIY05_07395 PF01389 OmpA-like transmembrane domain NIY05_07395 PF00691 OmpA family NIY05_07410 PF10431 C-terminal, D2-small domain, of ClpB protein NIY05_07410 PF07724 AAA domain (Cdc48 subfamily) NIY05_07410 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_07410 PF17871 AAA lid domain NIY05_07415 PF06812 ImpA, N-terminal, type VI secretion system NIY05_07420 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NIY05_07440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_07440 PF03466 LysR substrate binding domain NIY05_07450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIY05_07455 PF07690 Major Facilitator Superfamily NIY05_07470 PF02677 Epoxyqueuosine reductase QueH NIY05_07485 PF00376 MerR family regulatory protein NIY05_07485 PF09278 MerR, DNA binding NIY05_07495 PF00701 Dihydrodipicolinate synthetase family NIY05_07505 PF00392 Bacterial regulatory proteins, gntR family NIY05_07510 PF05544 Proline racemase NIY05_07515 PF01266 FAD dependent oxidoreductase NIY05_07525 PF04324 BFD-like [2Fe-2S] binding domain NIY05_07525 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_07535 PF00083 Sugar (and other) transporter NIY05_07540 PF00171 Aldehyde dehydrogenase family NIY05_07545 PF13520 Amino acid permease NIY05_07550 PF03315 Serine dehydratase beta chain NIY05_07550 PF03313 Serine dehydratase alpha chain NIY05_07555 PF01575 MaoC like domain NIY05_07555 PF00171 Aldehyde dehydrogenase family NIY05_07560 PF05138 Phenylacetic acid catabolic protein NIY05_07565 PF06243 Phenylacetic acid degradation B NIY05_07570 PF05138 Phenylacetic acid catabolic protein NIY05_07575 PF01883 Iron-sulfur cluster assembly protein NIY05_07580 PF00175 Oxidoreductase NAD-binding domain NIY05_07580 PF00970 Oxidoreductase FAD-binding domain NIY05_07580 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_07585 PF00378 Enoyl-CoA hydratase/isomerase NIY05_07590 PF00378 Enoyl-CoA hydratase/isomerase NIY05_07595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY05_07595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY05_07595 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIY05_07600 PF02803 Thiolase, C-terminal domain NIY05_07600 PF00108 Thiolase, N-terminal domain NIY05_07605 PF14535 AMP-binding enzyme C-terminal domain NIY05_07605 PF00501 AMP-binding enzyme NIY05_07610 PF08223 PaaX-like protein C-terminal domain NIY05_07610 PF07848 PaaX-like protein NIY05_07615 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_07620 PF03061 Thioesterase superfamily NIY05_07655 PF00199 Catalase NIY05_07660 PF01292 Prokaryotic cytochrome b561 NIY05_07680 PF12697 Alpha/beta hydrolase family NIY05_07685 PF01613 Flavin reductase like domain NIY05_07690 PF00296 Luciferase-like monooxygenase NIY05_07695 PF00171 Aldehyde dehydrogenase family NIY05_07705 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY05_07715 PF00171 Aldehyde dehydrogenase family NIY05_07720 PF02627 Carboxymuconolactone decarboxylase family NIY05_07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_07725 PF03466 LysR substrate binding domain NIY05_07730 PF02525 Flavodoxin-like fold NIY05_07735 PF01614 Bacterial transcriptional regulator NIY05_07735 PF09339 IclR helix-turn-helix domain NIY05_07740 PF01494 FAD binding domain NIY05_07745 PF07702 UTRA domain NIY05_07745 PF00392 Bacterial regulatory proteins, gntR family NIY05_07755 PF08402 TOBE domain NIY05_07755 PF00005 ABC transporter NIY05_07760 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_07765 PF01266 FAD dependent oxidoreductase NIY05_07770 PF00266 Aminotransferase class-V NIY05_07775 PF13419 Haloacid dehalogenase-like hydrolase NIY05_07780 PF07690 Major Facilitator Superfamily NIY05_07785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_07785 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_07785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_07790 PF02515 CoA-transferase family III NIY05_07795 PF09339 IclR helix-turn-helix domain NIY05_07800 PF00378 Enoyl-CoA hydratase/isomerase NIY05_07805 PF03060 Nitronate monooxygenase NIY05_07810 PF07690 Major Facilitator Superfamily NIY05_07815 PF09339 IclR helix-turn-helix domain NIY05_07820 PF00108 Thiolase, N-terminal domain NIY05_07820 PF02803 Thiolase, C-terminal domain NIY05_07825 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIY05_07825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY05_07825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY05_07835 PF00378 Enoyl-CoA hydratase/isomerase NIY05_07840 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_07840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_07840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_07845 PF07690 Major Facilitator Superfamily NIY05_07850 PF01144 Coenzyme A transferase NIY05_07855 PF01144 Coenzyme A transferase NIY05_07865 PF07690 Major Facilitator Superfamily NIY05_07875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_07875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_07875 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_07875 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY05_07890 PF03466 LysR substrate binding domain NIY05_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_07895 PF00682 HMGL-like NIY05_07900 PF18140 Propionyl-coenzyme A carboxylase BT domain NIY05_07900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY05_07900 PF00364 Biotin-requiring enzyme NIY05_07900 PF00289 Biotin carboxylase, N-terminal domain NIY05_07900 PF02785 Biotin carboxylase C-terminal domain NIY05_07905 PF00378 Enoyl-CoA hydratase/isomerase NIY05_07910 PF01039 Carboxyl transferase domain NIY05_07915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_07915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_07915 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_07920 PF00440 Bacterial regulatory proteins, tetR family NIY05_07925 PF00501 AMP-binding enzyme NIY05_07925 PF13193 AMP-binding enzyme C-terminal domain NIY05_07950 PF03466 LysR substrate binding domain NIY05_07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_07985 PF02464 Competence-damaged protein NIY05_07985 PF18146 Damage-inducible protein CinA KH domain NIY05_07985 PF00994 Probable molybdopterin binding domain NIY05_07995 PF18011 C-terminal domain found in long catalases NIY05_07995 PF00199 Catalase NIY05_07995 PF06628 Catalase-related immune-responsive NIY05_08020 PF00717 Peptidase S24-like NIY05_08030 PF13404 AsnC-type helix-turn-helix domain NIY05_08030 PF01037 Lrp/AsnC ligand binding domain NIY05_08040 PF00072 Response regulator receiver domain NIY05_08040 PF09308 LuxQ, periplasmic NIY05_08040 PF00512 His Kinase A (phospho-acceptor) domain NIY05_08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_08045 PF00072 Response regulator receiver domain NIY05_08060 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_08065 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_08070 PF00005 ABC transporter NIY05_08075 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY05_08080 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY05_08090 PF03466 LysR substrate binding domain NIY05_08090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08095 PF01810 LysE type translocator NIY05_08105 PF00266 Aminotransferase class-V NIY05_08115 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_08120 PF00581 Rhodanese-like domain NIY05_08130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08130 PF03466 LysR substrate binding domain NIY05_08135 PF02798 Glutathione S-transferase, N-terminal domain NIY05_08140 PF14834 Glutathione S-transferase, C-terminal domain NIY05_08140 PF02798 Glutathione S-transferase, N-terminal domain NIY05_08145 PF03466 LysR substrate binding domain NIY05_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08150 PF03788 LrgA family NIY05_08155 PF04172 LrgB-like family NIY05_08160 PF00155 Aminotransferase class I and II NIY05_08160 PF00392 Bacterial regulatory proteins, gntR family NIY05_08175 PF07690 Major Facilitator Superfamily NIY05_08180 PF16957 Malonate decarboxylase, alpha subunit, transporter NIY05_08185 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NIY05_08190 PF06857 Malonate decarboxylase delta subunit (MdcD) NIY05_08195 PF01039 Carboxyl transferase domain NIY05_08205 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NIY05_08210 PF00698 Acyl transferase domain NIY05_08225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08225 PF03466 LysR substrate binding domain NIY05_08230 PF00155 Aminotransferase class I and II NIY05_08230 PF00392 Bacterial regulatory proteins, gntR family NIY05_08240 PF02322 Cytochrome bd terminal oxidase subunit II NIY05_08245 PF01654 Cytochrome bd terminal oxidase subunit I NIY05_08255 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY05_08255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_08255 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_08260 PF00296 Luciferase-like monooxygenase NIY05_08265 PF00083 Sugar (and other) transporter NIY05_08275 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIY05_08280 PF00005 ABC transporter NIY05_08285 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_08290 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIY05_08295 PF01177 Asp/Glu/Hydantoin racemase NIY05_08300 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY05_08310 PF03466 LysR substrate binding domain NIY05_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08320 PF13382 Adenine deaminase C-terminal domain NIY05_08320 PF01979 Amidohydrolase family NIY05_08330 PF03960 ArsC family NIY05_08335 PF01022 Bacterial regulatory protein, arsR family NIY05_08340 PF01758 Sodium Bile acid symporter family NIY05_08345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08345 PF03466 LysR substrate binding domain NIY05_08360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_08360 PF13192 Thioredoxin domain NIY05_08375 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_08380 PF00588 SpoU rRNA Methylase family NIY05_08385 PF01336 OB-fold nucleic acid binding domain NIY05_08385 PF14579 Helix-hairpin-helix motif NIY05_08385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIY05_08385 PF02811 PHP domain NIY05_08385 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIY05_08390 PF00710 Asparaginase, N-terminal NIY05_08390 PF17763 Glutaminase/Asparaginase C-terminal domain NIY05_08395 PF00375 Sodium:dicarboxylate symporter family NIY05_08400 PF00155 Aminotransferase class I and II NIY05_08405 PF01641 SelR domain NIY05_08410 PF00255 Glutathione peroxidase NIY05_08415 PF12852 Cupin NIY05_08415 PF12833 Helix-turn-helix domain NIY05_08425 PF00155 Aminotransferase class I and II NIY05_08430 PF08335 GlnD PII-uridylyltransferase NIY05_08430 PF01966 HD domain NIY05_08430 PF01909 Nucleotidyltransferase domain NIY05_08435 PF02222 ATP-grasp domain NIY05_08445 PF05437 Branched-chain amino acid transport protein (AzlD) NIY05_08450 PF03591 AzlC protein NIY05_08475 PF01926 50S ribosome-binding GTPase NIY05_08475 PF06071 Protein of unknown function (DUF933) NIY05_08480 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_08485 PF09383 NIL domain NIY05_08485 PF00005 ABC transporter NIY05_08490 PF03180 NLPA lipoprotein NIY05_08495 PF03180 NLPA lipoprotein NIY05_08500 PF00296 Luciferase-like monooxygenase NIY05_08510 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY05_08510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_08525 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_08530 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_08535 PF00005 ABC transporter NIY05_08550 PF01037 Lrp/AsnC ligand binding domain NIY05_08555 PF01709 Transcriptional regulator NIY05_08565 PF00440 Bacterial regulatory proteins, tetR family NIY05_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_08585 PF03466 LysR substrate binding domain NIY05_08595 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY05_08605 PF00892 EamA-like transporter family NIY05_08625 PF13953 PapC C-terminal domain NIY05_08625 PF13954 PapC N-terminal domain NIY05_08625 PF00577 Outer membrane usher protein NIY05_08630 PF02753 Pili assembly chaperone PapD, C-terminal domain NIY05_08630 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIY05_08635 PF16970 Type-1 fimbrial protein, A NIY05_08650 PF04055 Radical SAM superfamily NIY05_08650 PF06968 Biotin and Thiamin Synthesis associated domain NIY05_08655 PF08331 Domain of unknown function (DUF1730) NIY05_08660 PF01256 Carbohydrate kinase NIY05_08660 PF03853 YjeF-related protein N-terminus NIY05_08665 PF02075 Crossover junction endodeoxyribonuclease RuvC NIY05_08680 PF00905 Penicillin binding protein transpeptidase domain NIY05_08700 PF02773 S-adenosylmethionine synthetase, C-terminal domain NIY05_08700 PF02772 S-adenosylmethionine synthetase, central domain NIY05_08700 PF00438 S-adenosylmethionine synthetase, N-terminal domain NIY05_08705 PF02779 Transketolase, pyrimidine binding domain NIY05_08705 PF00456 Transketolase, thiamine diphosphate binding domain NIY05_08705 PF02780 Transketolase, C-terminal domain NIY05_08715 PF04264 YceI-like domain NIY05_08725 PF09992 Phosphodiester glycosidase NIY05_08735 PF05958 tRNA (Uracil-5-)-methyltransferase NIY05_08740 PF04229 GrpB protein NIY05_08745 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NIY05_08745 PF14850 DNA-binding domain of Proline dehydrogenase NIY05_08745 PF00171 Aldehyde dehydrogenase family NIY05_08745 PF01619 Proline dehydrogenase NIY05_08750 PF01037 Lrp/AsnC ligand binding domain NIY05_08755 PF00474 Sodium:solute symporter family NIY05_08760 PF02146 Sir2 family NIY05_08765 PF01597 Glycine cleavage H-protein NIY05_08770 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY05_08770 PF12833 Helix-turn-helix domain NIY05_08780 PF00664 ABC transporter transmembrane region NIY05_08780 PF00005 ABC transporter NIY05_08785 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NIY05_08790 PF06912 Protein of unknown function (DUF1275) NIY05_08795 PF00375 Sodium:dicarboxylate symporter family NIY05_08820 PF08007 Cupin superfamily protein NIY05_08825 PF02545 Maf-like protein NIY05_08835 PF00162 Phosphoglycerate kinase NIY05_08845 PF01116 Fructose-bisphosphate aldolase class-II NIY05_08850 PF00639 PPIC-type PPIASE domain NIY05_08850 PF09312 SurA N-terminal domain NIY05_08855 PF04453 LPS transport system D NIY05_08855 PF03968 OstA-like protein NIY05_08860 PF01636 Phosphotransferase enzyme family NIY05_08865 PF00483 Nucleotidyl transferase NIY05_08870 PF02527 rRNA small subunit methyltransferase G NIY05_08875 PF13614 AAA domain NIY05_08880 PF17762 HTH domain found in ParB protein NIY05_08880 PF02195 ParB-like nuclease domain NIY05_08885 PF01618 MotA/TolQ/ExbB proton channel family NIY05_08895 PF00664 ABC transporter transmembrane region NIY05_08895 PF00005 ABC transporter NIY05_08900 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NIY05_08905 PF02348 Cytidylyltransferase NIY05_08910 PF09115 DNA polymerase III, delta subunit, C terminal NIY05_08920 PF01026 TatD related DNase NIY05_08935 PF02501 Type II secretion system (T2SS), protein I NIY05_08935 PF07963 Prokaryotic N-terminal methylation motif NIY05_08940 PF07963 Prokaryotic N-terminal methylation motif NIY05_08940 PF11612 Type II secretion system (T2SS), protein J NIY05_08945 PF03934 Type II secretion system (T2SS), protein K NIY05_08955 PF03167 Uracil DNA glycosylase superfamily NIY05_08965 PF14437 MafB19-like deaminase NIY05_08975 PF02224 Cytidylate kinase NIY05_08980 PF00575 S1 RNA binding domain NIY05_08985 PF00216 Bacterial DNA-binding protein NIY05_08995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NIY05_09005 PF00743 Flavin-binding monooxygenase-like NIY05_09015 PF03969 AFG1-like ATPase NIY05_09020 PF01274 Malate synthase NIY05_09030 PF02472 Biopolymer transport protein ExbD/TolR NIY05_09035 PF02472 Biopolymer transport protein ExbD/TolR NIY05_09040 PF01618 MotA/TolQ/ExbB proton channel family NIY05_09050 PF07715 TonB-dependent Receptor Plug Domain NIY05_09050 PF00593 TonB dependent receptor NIY05_09070 PF01432 Peptidase family M3 NIY05_09075 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_09080 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_09085 PF00005 ABC transporter NIY05_09085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIY05_09100 PF00459 Inositol monophosphatase family NIY05_09110 PF01649 Ribosomal protein S20 NIY05_09115 PF13460 NAD(P)H-binding NIY05_09120 PF03737 Aldolase/RraA NIY05_09150 PF17757 UvrB interaction domain NIY05_09150 PF03461 TRCF domain NIY05_09150 PF00271 Helicase conserved C-terminal domain NIY05_09150 PF02559 CarD-like/TRCF domain NIY05_09150 PF00270 DEAD/DEAH box helicase NIY05_09160 PF00211 Adenylate and Guanylate cyclase catalytic domain NIY05_09165 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_09170 PF00012 Hsp70 protein NIY05_09175 PF00226 DnaJ domain NIY05_09175 PF07743 HSCB C-terminal oligomerisation domain NIY05_09180 PF01521 Iron-sulphur cluster biosynthesis NIY05_09185 PF01592 NifU-like N terminal domain NIY05_09190 PF00266 Aminotransferase class-V NIY05_09195 PF02082 Transcriptional regulator NIY05_09210 PF00216 Bacterial DNA-binding protein NIY05_09215 PF00639 PPIC-type PPIASE domain NIY05_09215 PF09312 SurA N-terminal domain NIY05_09220 PF12852 Cupin NIY05_09220 PF12833 Helix-turn-helix domain NIY05_09225 PF00487 Fatty acid desaturase NIY05_09230 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_09230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_09230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_09235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_09235 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_09235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_09240 PF03109 ABC1 family NIY05_09250 PF04073 Aminoacyl-tRNA editing domain NIY05_09255 PF04183 IucA / IucC family NIY05_09255 PF06276 Ferric iron reductase FhuF-like transporter NIY05_09260 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY05_09265 PF07690 Major Facilitator Superfamily NIY05_09270 PF04183 IucA / IucC family NIY05_09270 PF06276 Ferric iron reductase FhuF-like transporter NIY05_09275 PF04183 IucA / IucC family NIY05_09275 PF06276 Ferric iron reductase FhuF-like transporter NIY05_09290 PF07715 TonB-dependent Receptor Plug Domain NIY05_09290 PF00593 TonB dependent receptor NIY05_09315 PF13419 Haloacid dehalogenase-like hydrolase NIY05_09325 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NIY05_09330 PF02277 Phosphoribosyltransferase NIY05_09345 PF02654 Cobalamin-5-phosphate synthase NIY05_09350 PF00793 DAHP synthetase I family NIY05_09355 PF01925 Sulfite exporter TauE/SafE NIY05_09375 PF07715 TonB-dependent Receptor Plug Domain NIY05_09375 PF00593 TonB dependent receptor NIY05_09380 PF02684 Lipid-A-disaccharide synthetase NIY05_09390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_09395 PF00005 ABC transporter NIY05_09430 PF01230 HIT domain NIY05_09460 PF08241 Methyltransferase domain NIY05_09465 PF00561 alpha/beta hydrolase fold NIY05_09470 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY05_09480 PF02575 YbaB/EbfC DNA-binding family NIY05_09485 PF02132 RecR protein NIY05_09485 PF13662 Toprim domain NIY05_09490 PF00570 HRDC domain NIY05_09490 PF01612 3'-5' exonuclease NIY05_09510 PF05166 YcgL domain NIY05_09520 PF17862 AAA+ lid domain NIY05_09520 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_09520 PF01434 Peptidase family M41 NIY05_09530 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_09535 PF05175 Methyltransferase small domain NIY05_09540 PF01264 Chorismate synthase NIY05_09545 PF00990 Diguanylate cyclase, GGDEF domain NIY05_09545 PF08448 PAS fold NIY05_09560 PF04055 Radical SAM superfamily NIY05_09565 PF00676 Dehydrogenase E1 component NIY05_09570 PF02779 Transketolase, pyrimidine binding domain NIY05_09570 PF02780 Transketolase, C-terminal domain NIY05_09575 PF02817 e3 binding domain NIY05_09575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY05_09575 PF00364 Biotin-requiring enzyme NIY05_09580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY05_09580 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_09585 PF00106 short chain dehydrogenase NIY05_09590 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_09590 PF00107 Zinc-binding dehydrogenase NIY05_09595 PF01062 Bestrophin, RFP-TM, chloride channel NIY05_09600 PF02954 Bacterial regulatory protein, Fis family NIY05_09600 PF00072 Response regulator receiver domain NIY05_09600 PF00158 Sigma-54 interaction domain NIY05_09605 PF04273 Putative phosphatase (DUF442) NIY05_09605 PF00753 Metallo-beta-lactamase superfamily NIY05_09620 PF01925 Sulfite exporter TauE/SafE NIY05_09635 PF06445 GyrI-like small molecule binding domain NIY05_09635 PF12833 Helix-turn-helix domain NIY05_09640 PF01638 HxlR-like helix-turn-helix NIY05_09645 PF02525 Flavodoxin-like fold NIY05_09655 PF07702 UTRA domain NIY05_09655 PF00392 Bacterial regulatory proteins, gntR family NIY05_09670 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIY05_09675 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_09680 PF00005 ABC transporter NIY05_09695 PF00083 Sugar (and other) transporter NIY05_09700 PF00593 TonB dependent receptor NIY05_09700 PF07715 TonB-dependent Receptor Plug Domain NIY05_09705 PF00206 Lyase NIY05_09705 PF10415 Fumarase C C-terminus NIY05_09720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_09720 PF03466 LysR substrate binding domain NIY05_09725 PF03466 LysR substrate binding domain NIY05_09725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_09730 PF00108 Thiolase, N-terminal domain NIY05_09730 PF02803 Thiolase, C-terminal domain NIY05_09735 PF02667 Short chain fatty acid transporter NIY05_09740 PF01144 Coenzyme A transferase NIY05_09745 PF01144 Coenzyme A transferase NIY05_09750 PF03466 LysR substrate binding domain NIY05_09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_09775 PF12833 Helix-turn-helix domain NIY05_09775 PF06719 AraC-type transcriptional regulator N-terminus NIY05_09780 PF07690 Major Facilitator Superfamily NIY05_09785 PF01738 Dienelactone hydrolase family NIY05_09800 PF01613 Flavin reductase like domain NIY05_09810 PF14525 AraC-binding-like domain NIY05_09810 PF12833 Helix-turn-helix domain NIY05_09815 PF00175 Oxidoreductase NAD-binding domain NIY05_09815 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_09815 PF00970 Oxidoreductase FAD-binding domain NIY05_09820 PF00866 Ring hydroxylating beta subunit NIY05_09825 PF00355 Rieske [2Fe-2S] domain NIY05_09825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY05_09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_09830 PF03459 TOBE domain NIY05_09840 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_09845 PF00005 ABC transporter NIY05_09845 PF03459 TOBE domain NIY05_09850 PF00106 short chain dehydrogenase NIY05_09855 PF00857 Isochorismatase family NIY05_09855 PF00550 Phosphopantetheine attachment site NIY05_09865 PF00149 Calcineurin-like phosphoesterase NIY05_09870 PF02503 Polyphosphate kinase middle domain NIY05_09870 PF17941 Polyphosphate kinase C-terminal domain 1 NIY05_09870 PF13090 Polyphosphate kinase C-terminal domain 2 NIY05_09870 PF13089 Polyphosphate kinase N-terminal domain NIY05_09875 PF08042 PqqA family NIY05_09880 PF12706 Beta-lactamase superfamily domain NIY05_09885 PF03070 TENA/THI-4/PQQC family NIY05_09890 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NIY05_09895 PF13186 Iron-sulfur cluster-binding domain NIY05_09895 PF04055 Radical SAM superfamily NIY05_09900 PF01244 Membrane dipeptidase (Peptidase family M19) NIY05_09920 PF13091 PLD-like domain NIY05_09935 PF00199 Catalase NIY05_09945 PF00107 Zinc-binding dehydrogenase NIY05_09945 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_09955 PF00419 Fimbrial protein NIY05_09960 PF13953 PapC C-terminal domain NIY05_09960 PF13954 PapC N-terminal domain NIY05_09960 PF00577 Outer membrane usher protein NIY05_09965 PF02753 Pili assembly chaperone PapD, C-terminal domain NIY05_09965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIY05_09975 PF16970 Type-1 fimbrial protein, A NIY05_09995 PF01266 FAD dependent oxidoreductase NIY05_10010 PF01593 Flavin containing amine oxidoreductase NIY05_10015 PF00743 Flavin-binding monooxygenase-like NIY05_10020 PF12146 Serine aminopeptidase, S33 NIY05_10025 PF02321 Outer membrane efflux protein NIY05_10030 PF00873 AcrB/AcrD/AcrF family NIY05_10035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_10035 PF00529 HlyD membrane-fusion protein of T1SS NIY05_10040 PF00486 Transcriptional regulatory protein, C terminal NIY05_10040 PF00072 Response regulator receiver domain NIY05_10070 PF02311 AraC-like ligand binding domain NIY05_10070 PF12833 Helix-turn-helix domain NIY05_10075 PF12146 Serine aminopeptidase, S33 NIY05_10125 PF13291 ACT domain NIY05_10125 PF04607 Region found in RelA / SpoT proteins NIY05_10125 PF02824 TGS domain NIY05_10135 PF01975 Survival protein SurE NIY05_10160 PF07690 Major Facilitator Superfamily NIY05_10165 PF13533 Biotin-lipoyl like NIY05_10170 PF01425 Amidase NIY05_10175 PF00196 Bacterial regulatory proteins, luxR family NIY05_10250 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIY05_10255 PF14572 Phosphoribosyl synthetase-associated domain NIY05_10255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIY05_10275 PF00005 ABC transporter NIY05_10280 PF01032 FecCD transport family NIY05_10290 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_10290 PF00107 Zinc-binding dehydrogenase NIY05_10305 PF06719 AraC-type transcriptional regulator N-terminus NIY05_10305 PF12833 Helix-turn-helix domain NIY05_10310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY05_10310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY05_10315 PF07690 Major Facilitator Superfamily NIY05_10320 PF01370 NAD dependent epimerase/dehydratase family NIY05_10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_10325 PF03466 LysR substrate binding domain NIY05_10335 PF00920 Dehydratase family NIY05_10340 PF00171 Aldehyde dehydrogenase family NIY05_10355 PF00529 HlyD membrane-fusion protein of T1SS NIY05_10355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_10390 PF03737 Aldolase/RraA NIY05_10395 PF01842 ACT domain NIY05_10395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY05_10395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY05_10400 PF07690 Major Facilitator Superfamily NIY05_10420 PF03466 LysR substrate binding domain NIY05_10420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_10430 PF08450 SMP-30/Gluconolactonase/LRE-like region NIY05_10435 PF00392 Bacterial regulatory proteins, gntR family NIY05_10435 PF07702 UTRA domain NIY05_10445 PF04909 Amidohydrolase NIY05_10450 PF07690 Major Facilitator Superfamily NIY05_10465 PF13018 Extended Signal Peptide of Type V secretion system NIY05_10465 PF13332 Hemagglutinin repeat NIY05_10465 PF05860 haemagglutination activity domain NIY05_10465 PF04829 Pre-toxin domain with VENN motif NIY05_10470 PF08479 POTRA domain, ShlB-type NIY05_10470 PF17287 POTRA domain NIY05_10470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIY05_10480 PF01546 Peptidase family M20/M25/M40 NIY05_10480 PF07687 Peptidase dimerisation domain NIY05_10490 PF02254 TrkA-N domain NIY05_10490 PF00999 Sodium/hydrogen exchanger family NIY05_10495 PF07995 Glucose / Sorbosone dehydrogenase NIY05_10500 PF03466 LysR substrate binding domain NIY05_10500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_10505 PF00857 Isochorismatase family NIY05_10515 PF00440 Bacterial regulatory proteins, tetR family NIY05_10515 PF08359 YsiA-like protein, C-terminal region NIY05_10520 PF12706 Beta-lactamase superfamily domain NIY05_10530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_10540 PF09278 MerR, DNA binding NIY05_10540 PF00376 MerR family regulatory protein NIY05_10545 PF01872 RibD C-terminal domain NIY05_10550 PF00106 short chain dehydrogenase NIY05_10555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY05_10555 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_10560 PF01047 MarR family NIY05_10565 PF07859 alpha/beta hydrolase fold NIY05_10580 PF00199 Catalase NIY05_10580 PF06628 Catalase-related immune-responsive NIY05_10585 PF00561 alpha/beta hydrolase fold NIY05_10595 PF00171 Aldehyde dehydrogenase family NIY05_10600 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_10600 PF00107 Zinc-binding dehydrogenase NIY05_10605 PF00474 Sodium:solute symporter family NIY05_10610 PF04341 Protein of unknown function, DUF485 NIY05_10615 PF13193 AMP-binding enzyme C-terminal domain NIY05_10615 PF00501 AMP-binding enzyme NIY05_10620 PF02954 Bacterial regulatory protein, Fis family NIY05_10620 PF06506 Propionate catabolism activator NIY05_10620 PF00158 Sigma-54 interaction domain NIY05_10630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_10630 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_10630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_10650 PF00171 Aldehyde dehydrogenase family NIY05_10660 PF07690 Major Facilitator Superfamily NIY05_10665 PF00920 Dehydratase family NIY05_10670 PF07729 FCD domain NIY05_10670 PF00392 Bacterial regulatory proteins, gntR family NIY05_10680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_10680 PF03466 LysR substrate binding domain NIY05_10685 PF13378 Enolase C-terminal domain-like NIY05_10685 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIY05_10690 PF02426 Muconolactone delta-isomerase NIY05_10695 PF00775 Dioxygenase NIY05_10695 PF04444 Catechol dioxygenase N terminus NIY05_10700 PF01144 Coenzyme A transferase NIY05_10705 PF01144 Coenzyme A transferase NIY05_10710 PF02803 Thiolase, C-terminal domain NIY05_10710 PF00108 Thiolase, N-terminal domain NIY05_10715 PF12146 Serine aminopeptidase, S33 NIY05_10720 PF01804 Penicillin amidase NIY05_10725 PF00171 Aldehyde dehydrogenase family NIY05_10735 PF02728 Copper amine oxidase, N3 domain NIY05_10735 PF01179 Copper amine oxidase, enzyme domain NIY05_10735 PF07833 Copper amine oxidase N-terminal domain NIY05_10735 PF02727 Copper amine oxidase, N2 domain NIY05_10740 PF02311 AraC-like ligand binding domain NIY05_10740 PF12833 Helix-turn-helix domain NIY05_10745 PF01613 Flavin reductase like domain NIY05_10750 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_10750 PF00175 Oxidoreductase NAD-binding domain NIY05_10765 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY05_10765 PF00355 Rieske [2Fe-2S] domain NIY05_10780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY05_10785 PF01425 Amidase NIY05_10795 PF07690 Major Facilitator Superfamily NIY05_10805 PF00106 short chain dehydrogenase NIY05_10820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_10820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_10820 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_10825 PF03466 LysR substrate binding domain NIY05_10825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_10830 PF09339 IclR helix-turn-helix domain NIY05_10830 PF01614 Bacterial transcriptional regulator NIY05_10835 PF00753 Metallo-beta-lactamase superfamily NIY05_10845 PF04143 Sulphur transport NIY05_10855 PF13360 PQQ-like domain NIY05_10855 PF01011 PQQ enzyme repeat NIY05_10860 PF04966 Carbohydrate-selective porin, OprB family NIY05_10865 PF05048 Periplasmic copper-binding protein (NosD) NIY05_10870 PF01487 Type I 3-dehydroquinase NIY05_10875 PF00775 Dioxygenase NIY05_10880 PF00775 Dioxygenase NIY05_10880 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NIY05_10885 PF02627 Carboxymuconolactone decarboxylase family NIY05_10890 PF07690 Major Facilitator Superfamily NIY05_10895 PF00561 alpha/beta hydrolase fold NIY05_10900 PF00206 Lyase NIY05_10900 PF10397 Adenylosuccinate lyase C-terminus NIY05_10905 PF00108 Thiolase, N-terminal domain NIY05_10905 PF02803 Thiolase, C-terminal domain NIY05_10910 PF01144 Coenzyme A transferase NIY05_10915 PF01144 Coenzyme A transferase NIY05_10920 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIY05_10925 PF04977 Septum formation initiator NIY05_10930 PF04239 Protein of unknown function (DUF421) NIY05_10935 PF03952 Enolase, N-terminal domain NIY05_10935 PF00113 Enolase, C-terminal TIM barrel domain NIY05_10940 PF00793 DAHP synthetase I family NIY05_10945 PF00117 Glutamine amidotransferase class-I NIY05_10945 PF06418 CTP synthase N-terminus NIY05_10975 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_10975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY05_10990 PF00793 DAHP synthetase I family NIY05_10995 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NIY05_11000 PF02861 Clp amino terminal domain, pathogenicity island component NIY05_11000 PF17871 AAA lid domain NIY05_11000 PF10431 C-terminal, D2-small domain, of ClpB protein NIY05_11000 PF07724 AAA domain (Cdc48 subfamily) NIY05_11000 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_11005 PF02617 ATP-dependent Clp protease adaptor protein ClpS NIY05_11015 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIY05_11015 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIY05_11030 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NIY05_11035 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_11035 PF00585 C-terminal regulatory domain of Threonine dehydratase NIY05_11040 PF02254 TrkA-N domain NIY05_11040 PF02080 TrkA-C domain NIY05_11045 PF02386 Cation transport protein NIY05_11050 PF02253 Phospholipase A1 NIY05_11055 PF08367 Peptidase M16C associated NIY05_11055 PF05193 Peptidase M16 inactive domain NIY05_11055 PF00675 Insulinase (Peptidase family M16) NIY05_11060 PF00593 TonB dependent receptor NIY05_11060 PF07715 TonB-dependent Receptor Plug Domain NIY05_11065 PF00294 pfkB family carbohydrate kinase NIY05_11075 PF07290 Protein of unknown function (DUF1449) NIY05_11085 PF01654 Cytochrome bd terminal oxidase subunit I NIY05_11090 PF02322 Cytochrome bd terminal oxidase subunit II NIY05_11095 PF08173 Membrane bound YbgT-like protein NIY05_11110 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NIY05_11120 PF00448 SRP54-type protein, GTPase domain NIY05_11120 PF02881 SRP54-type protein, helical bundle domain NIY05_11145 PF00571 CBS domain NIY05_11145 PF00478 IMP dehydrogenase / GMP reductase domain NIY05_11150 PF00202 Aminotransferase class-III NIY05_11155 PF00462 Glutaredoxin NIY05_11165 PF03466 LysR substrate binding domain NIY05_11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_11170 PF00557 Metallopeptidase family M24 NIY05_11175 PF05525 Branched-chain amino acid transport protein NIY05_11200 PF00391 PEP-utilising enzyme, mobile domain NIY05_11200 PF02896 PEP-utilising enzyme, TIM barrel domain NIY05_11200 PF00381 PTS HPr component phosphorylation site NIY05_11200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NIY05_11200 PF05524 PEP-utilising enzyme, N-terminal NIY05_11205 PF00294 pfkB family carbohydrate kinase NIY05_11210 PF02378 Phosphotransferase system, EIIC NIY05_11210 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NIY05_11230 PF03707 Bacterial signalling protein N terminal repeat NIY05_11230 PF00563 EAL domain NIY05_11230 PF00990 Diguanylate cyclase, GGDEF domain NIY05_11240 PF07995 Glucose / Sorbosone dehydrogenase NIY05_11245 PF02586 SOS response associated peptidase (SRAP) NIY05_11250 PF00916 Sulfate permease family NIY05_11250 PF01740 STAS domain NIY05_11255 PF00082 Subtilase family NIY05_11255 PF05922 Peptidase inhibitor I9 NIY05_11270 PF00324 Amino acid permease NIY05_11275 PF00266 Aminotransferase class-V NIY05_11280 PF01037 Lrp/AsnC ligand binding domain NIY05_11305 PF13419 Haloacid dehalogenase-like hydrolase NIY05_11310 PF01479 S4 domain NIY05_11315 PF00154 recA bacterial DNA recombination protein NIY05_11320 PF02631 RecX family NIY05_11335 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_11335 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NIY05_11340 PF07977 FabA-like domain NIY05_11345 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_11345 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NIY05_11355 PF01103 Surface antigen NIY05_11355 PF07244 Surface antigen variable number repeat NIY05_11360 PF13180 PDZ domain NIY05_11360 PF17820 PDZ domain NIY05_11360 PF02163 Peptidase family M50 NIY05_11365 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIY05_11365 PF13288 DXP reductoisomerase C-terminal domain NIY05_11365 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NIY05_11375 PF01255 Putative undecaprenyl diphosphate synthase NIY05_11380 PF01765 Ribosome recycling factor NIY05_11385 PF00696 Amino acid kinase family NIY05_11390 PF18693 TRAM domain NIY05_11390 PF04055 Radical SAM superfamily NIY05_11390 PF00919 Uncharacterized protein family UPF0004 NIY05_11395 PF00989 PAS fold NIY05_11395 PF00512 His Kinase A (phospho-acceptor) domain NIY05_11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_11400 PF00158 Sigma-54 interaction domain NIY05_11400 PF00072 Response regulator receiver domain NIY05_11400 PF02954 Bacterial regulatory protein, Fis family NIY05_11420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIY05_11420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIY05_11430 PF02542 YgbB family NIY05_11440 PF01266 FAD dependent oxidoreductase NIY05_11460 PF00206 Lyase NIY05_11460 PF10415 Fumarase C C-terminus NIY05_11465 PF16363 GDP-mannose 4,6 dehydratase NIY05_11470 PF02635 DsrE/DsrF-like family NIY05_11490 PF00892 EamA-like transporter family NIY05_11495 PF00155 Aminotransferase class I and II NIY05_11495 PF00392 Bacterial regulatory proteins, gntR family NIY05_11500 PF01638 HxlR-like helix-turn-helix NIY05_11505 PF00994 Probable molybdopterin binding domain NIY05_11505 PF03454 MoeA C-terminal region (domain IV) NIY05_11505 PF03453 MoeA N-terminal region (domain I and II) NIY05_11510 PF01967 MoaC family NIY05_11510 PF00994 Probable molybdopterin binding domain NIY05_11515 PF02391 MoaE protein NIY05_11525 PF06463 Molybdenum Cofactor Synthesis C NIY05_11525 PF04055 Radical SAM superfamily NIY05_11530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY05_11530 PF01568 Molydopterin dinucleotide binding domain NIY05_11530 PF00384 Molybdopterin oxidoreductase NIY05_11535 PF12804 MobA-like NTP transferase domain NIY05_11540 PF04324 BFD-like [2Fe-2S] binding domain NIY05_11540 PF00384 Molybdopterin oxidoreductase NIY05_11540 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY05_11540 PF01568 Molydopterin dinucleotide binding domain NIY05_11545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY05_11545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY05_11545 PF04324 BFD-like [2Fe-2S] binding domain NIY05_11545 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_11545 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIY05_11550 PF04324 BFD-like [2Fe-2S] binding domain NIY05_11550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY05_11550 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_11550 PF13806 Rieske-like [2Fe-2S] domain NIY05_11550 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIY05_11550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY05_11560 PF00072 Response regulator receiver domain NIY05_11560 PF00486 Transcriptional regulatory protein, C terminal NIY05_11565 PF00005 ABC transporter NIY05_11575 PF11799 impB/mucB/samB family C-terminal domain NIY05_11575 PF00817 impB/mucB/samB family NIY05_11575 PF13438 Domain of unknown function (DUF4113) NIY05_11580 PF01220 Dehydroquinase class II NIY05_11585 PF00364 Biotin-requiring enzyme NIY05_11590 PF02785 Biotin carboxylase C-terminal domain NIY05_11590 PF00289 Biotin carboxylase, N-terminal domain NIY05_11590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY05_11600 PF12832 MFS_1 like family NIY05_11670 PF01551 Peptidase family M23 NIY05_11670 PF10145 Phage-related minor tail protein NIY05_11670 PF01464 Transglycosylase SLT domain NIY05_11690 PF03869 Arc-like DNA binding domain NIY05_11875 PF01555 DNA methylase NIY05_11985 PF01645 Conserved region in glutamate synthase NIY05_12000 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NIY05_12000 PF01565 FAD binding domain NIY05_12005 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIY05_12015 PF00465 Iron-containing alcohol dehydrogenase NIY05_12020 PF03061 Thioesterase superfamily NIY05_12025 PF04185 Phosphoesterase family NIY05_12025 PF05506 Domain of unknown function (DUF756) NIY05_12030 PF12169 DNA polymerase III subunits gamma and tau domain III NIY05_12030 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NIY05_12030 PF12170 DNA polymerase III tau subunit V interacting with alpha NIY05_12035 PF07690 Major Facilitator Superfamily NIY05_12045 PF00144 Beta-lactamase NIY05_12050 PF01575 MaoC like domain NIY05_12060 PF02803 Thiolase, C-terminal domain NIY05_12060 PF00108 Thiolase, N-terminal domain NIY05_12070 PF03466 LysR substrate binding domain NIY05_12070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_12075 PF00923 Transaldolase/Fructose-6-phosphate aldolase NIY05_12080 PF01810 LysE type translocator NIY05_12085 PF01037 Lrp/AsnC ligand binding domain NIY05_12090 PF03594 Benzoate membrane transport protein NIY05_12095 PF02308 MgtC family NIY05_12100 PF00689 Cation transporting ATPase, C-terminus NIY05_12100 PF00690 Cation transporter/ATPase, N-terminus NIY05_12125 PF00582 Universal stress protein family NIY05_12130 PF00005 ABC transporter NIY05_12130 PF12848 ABC transporter NIY05_12150 PF00593 TonB dependent receptor NIY05_12150 PF07715 TonB-dependent Receptor Plug Domain NIY05_12185 PF00924 Mechanosensitive ion channel NIY05_12190 PF07715 TonB-dependent Receptor Plug Domain NIY05_12190 PF00593 TonB dependent receptor NIY05_12195 PF00440 Bacterial regulatory proteins, tetR family NIY05_12210 PF01037 Lrp/AsnC ligand binding domain NIY05_12215 PF01817 Chorismate mutase type II NIY05_12225 PF00106 short chain dehydrogenase NIY05_12235 PF01433 Peptidase family M1 domain NIY05_12235 PF11940 Domain of unknown function (DUF3458) Ig-like fold NIY05_12235 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NIY05_12250 PF02110 Hydroxyethylthiazole kinase family NIY05_12255 PF06445 GyrI-like small molecule binding domain NIY05_12265 PF05970 PIF1-like helicase NIY05_12265 PF14493 Helix-turn-helix domain NIY05_12270 PF00465 Iron-containing alcohol dehydrogenase NIY05_12285 PF00171 Aldehyde dehydrogenase family NIY05_12290 PF13520 Amino acid permease NIY05_12295 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NIY05_12300 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NIY05_12305 PF00117 Glutamine amidotransferase class-I NIY05_12305 PF00958 GMP synthase C terminal domain NIY05_12305 PF02540 NAD synthase NIY05_12310 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY05_12310 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NIY05_12315 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIY05_12320 PF00149 Calcineurin-like phosphoesterase NIY05_12330 PF00881 Nitroreductase family NIY05_12340 PF17209 Hfq protein NIY05_12350 PF01119 DNA mismatch repair protein, C-terminal domain NIY05_12350 PF08676 MutL C terminal dimerisation domain NIY05_12355 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NIY05_12360 PF01479 S4 domain NIY05_12360 PF00849 RNA pseudouridylate synthase NIY05_12375 PF00849 RNA pseudouridylate synthase NIY05_12375 PF01479 S4 domain NIY05_12385 PF04284 Protein of unknown function (DUF441) NIY05_12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_12390 PF03466 LysR substrate binding domain NIY05_12405 PF07690 Major Facilitator Superfamily NIY05_12410 PF00520 Ion transport protein NIY05_12410 PF00027 Cyclic nucleotide-binding domain NIY05_12420 PF11791 Aconitate B N-terminal domain NIY05_12420 PF06434 Aconitate hydratase 2 N-terminus NIY05_12420 PF00330 Aconitase family (aconitate hydratase) NIY05_12435 PF07244 Surface antigen variable number repeat NIY05_12435 PF01103 Surface antigen NIY05_12435 PF17243 POTRA domain TamA domain 1 NIY05_12440 PF07690 Major Facilitator Superfamily NIY05_12445 PF03232 Ubiquinone biosynthesis protein COQ7 NIY05_12455 PF00120 Glutamine synthetase, catalytic domain NIY05_12460 PF00072 Response regulator receiver domain NIY05_12460 PF00486 Transcriptional regulatory protein, C terminal NIY05_12465 PF13493 Domain of unknown function (DUF4118) NIY05_12465 PF02702 Osmosensitive K+ channel His kinase sensor domain NIY05_12465 PF00512 His Kinase A (phospho-acceptor) domain NIY05_12465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_12470 PF02669 K+-transporting ATPase, c chain NIY05_12480 PF03814 Potassium-transporting ATPase A subunit NIY05_12495 PF03109 ABC1 family NIY05_12500 PF00899 ThiF family NIY05_12505 PF01613 Flavin reductase like domain NIY05_12510 PF00501 AMP-binding enzyme NIY05_12510 PF13193 AMP-binding enzyme C-terminal domain NIY05_12515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_12515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_12515 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_12520 PF00106 short chain dehydrogenase NIY05_12525 PF12833 Helix-turn-helix domain NIY05_12530 PF09084 NMT1/THI5 like NIY05_12535 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_12540 PF17827 PrmC N-terminal domain NIY05_12540 PF13847 Methyltransferase domain NIY05_12545 PF00472 RF-1 domain NIY05_12545 PF03462 PCRF domain NIY05_12555 PF03466 LysR substrate binding domain NIY05_12555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_12570 PF00296 Luciferase-like monooxygenase NIY05_12580 PF13994 PgaD-like protein NIY05_12585 PF00535 Glycosyl transferase family 2 NIY05_12590 PF01522 Polysaccharide deacetylase NIY05_12590 PF14883 Hypothetical glycosyl hydrolase family 13 NIY05_12600 PF03618 Kinase/pyrophosphorylase NIY05_12605 PF00391 PEP-utilising enzyme, mobile domain NIY05_12605 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIY05_12605 PF02896 PEP-utilising enzyme, TIM barrel domain NIY05_12615 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NIY05_12615 PF06481 COX Aromatic Rich Motif NIY05_12620 PF00115 Cytochrome C and Quinol oxidase polypeptide I NIY05_12625 PF00510 Cytochrome c oxidase subunit III NIY05_12630 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NIY05_12635 PF01040 UbiA prenyltransferase family NIY05_12640 PF01250 Ribosomal protein S6 NIY05_12645 PF01084 Ribosomal protein S18 NIY05_12650 PF03948 Ribosomal protein L9, C-terminal domain NIY05_12650 PF01281 Ribosomal protein L9, N-terminal domain NIY05_12655 PF03796 DnaB-like helicase C terminal domain NIY05_12655 PF00772 DnaB-like helicase N terminal domain NIY05_12660 PF00842 Alanine racemase, C-terminal domain NIY05_12660 PF01168 Alanine racemase, N-terminal domain NIY05_12670 PF01841 Transglutaminase-like superfamily NIY05_12670 PF08379 Bacterial transglutaminase-like N-terminal region NIY05_12680 PF14403 Circularly permuted ATP-grasp type 2 NIY05_12690 PF01134 Glucose inhibited division protein A NIY05_12690 PF13932 GidA associated domain NIY05_12710 PF02954 Bacterial regulatory protein, Fis family NIY05_12715 PF01808 AICARFT/IMPCHase bienzyme NIY05_12715 PF02142 MGS-like domain NIY05_12720 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIY05_12720 PF02843 Phosphoribosylglycinamide synthetase, C domain NIY05_12720 PF02844 Phosphoribosylglycinamide synthetase, N domain NIY05_12725 PF03180 NLPA lipoprotein NIY05_12730 PF00005 ABC transporter NIY05_12730 PF09383 NIL domain NIY05_12735 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_12740 PF00753 Metallo-beta-lactamase superfamily NIY05_12740 PF16123 Hydroxyacylglutathione hydrolase C-terminus NIY05_12750 PF00375 Sodium:dicarboxylate symporter family NIY05_12765 PF13610 DDE domain NIY05_12775 PF13610 DDE domain NIY05_12785 PF00239 Resolvase, N terminal domain NIY05_12785 PF02796 Helix-turn-helix domain of resolvase NIY05_12790 PF11809 Domain of unknown function (DUF3330) NIY05_12790 PF00563 EAL domain NIY05_12800 PF13495 Phage integrase, N-terminal SAM-like domain NIY05_12800 PF00589 Phage integrase family NIY05_12805 PF00583 Acetyltransferase (GNAT) family NIY05_12825 PF00893 Small Multidrug Resistance protein NIY05_12830 PF00809 Pterin binding enzyme NIY05_12850 PF13610 DDE domain NIY05_12855 PF01636 Phosphotransferase enzyme family NIY05_12870 PF13610 DDE domain NIY05_12875 PF00239 Resolvase, N terminal domain NIY05_12875 PF02796 Helix-turn-helix domain of resolvase NIY05_12885 PF13610 DDE domain NIY05_12895 PF00239 Resolvase, N terminal domain NIY05_12895 PF02796 Helix-turn-helix domain of resolvase NIY05_12900 PF13610 DDE domain NIY05_12910 PF04958 Arginine N-succinyltransferase beta subunit NIY05_12915 PF00202 Aminotransferase class-III NIY05_12925 PF00171 Aldehyde dehydrogenase family NIY05_12935 PF00392 Bacterial regulatory proteins, gntR family NIY05_12935 PF07729 FCD domain NIY05_12945 PF00324 Amino acid permease NIY05_12950 PF01266 FAD dependent oxidoreductase NIY05_12955 PF00324 Amino acid permease NIY05_12995 PF03527 RHS protein NIY05_12995 PF05593 RHS Repeat NIY05_13000 PF13296 Putative type VI secretion system Rhs element Vgr NIY05_13000 PF04717 Type VI secretion system, phage-baseplate injector NIY05_13000 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY05_13020 PF03180 NLPA lipoprotein NIY05_13025 PF05987 Bacterial protein of unknown function (DUF898) NIY05_13040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY05_13040 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_13045 PF00764 Arginosuccinate synthase NIY05_13050 PF00360 Phytochrome region NIY05_13050 PF00990 Diguanylate cyclase, GGDEF domain NIY05_13050 PF00563 EAL domain NIY05_13050 PF01590 GAF domain NIY05_13055 PF01979 Amidohydrolase family NIY05_13060 PF00929 Exonuclease NIY05_13070 PF00593 TonB dependent receptor NIY05_13070 PF07715 TonB-dependent Receptor Plug Domain NIY05_13075 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_13075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY05_13080 PF00005 ABC transporter NIY05_13080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIY05_13085 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_13085 PF12911 N-terminal TM domain of oligopeptide transport permease C NIY05_13090 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_13095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NIY05_13100 PF01476 LysM domain NIY05_13100 PF01464 Transglycosylase SLT domain NIY05_13100 PF01464 Transglycosylase SLT domain NIY05_13100 PF01476 LysM domain NIY05_13105 PF00929 Exonuclease NIY05_13115 PF09297 NADH pyrophosphatase zinc ribbon domain NIY05_13115 PF00293 NUDIX domain NIY05_13125 PF04972 BON domain NIY05_13130 PF02021 Uncharacterised protein family UPF0102 NIY05_13135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIY05_13145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_13145 PF03466 LysR substrate binding domain NIY05_13150 PF01810 LysE type translocator NIY05_13160 PF13411 MerR HTH family regulatory protein NIY05_13170 PF01494 FAD binding domain NIY05_13175 PF01494 FAD binding domain NIY05_13180 PF05195 Aminopeptidase P, N-terminal domain NIY05_13180 PF00557 Metallopeptidase family M24 NIY05_13265 PF01551 Peptidase family M23 NIY05_13265 PF10145 Phage-related minor tail protein NIY05_13265 PF01464 Transglycosylase SLT domain NIY05_13325 PF04860 Phage portal protein NIY05_13425 PF00772 DnaB-like helicase N terminal domain NIY05_13425 PF03796 DnaB-like helicase C terminal domain NIY05_13445 PF00717 Peptidase S24-like NIY05_13445 PF01726 LexA DNA binding domain NIY05_13500 PF00884 Sulfatase NIY05_13500 PF08019 Phosphoethanolamine transferase EptA/EptB NIY05_13545 PF08525 Opacity-associated protein A N-terminal motif NIY05_13545 PF01551 Peptidase family M23 NIY05_13545 PF01476 LysM domain NIY05_13870 PF01812 5-formyltetrahydrofolate cyclo-ligase family NIY05_13875 PF00691 OmpA family NIY05_13875 PF04355 SmpA / OmlA family NIY05_13880 PF13018 Extended Signal Peptide of Type V secretion system NIY05_13880 PF03895 YadA-like membrane anchor domain NIY05_13880 PF05658 Head domain of trimeric autotransporter adhesin NIY05_13880 PF05662 Coiled stalk of trimeric autotransporter adhesin NIY05_13885 PF00004 ATPase family associated with various cellular activities (AAA) NIY05_13885 PF05362 Lon protease (S16) C-terminal proteolytic domain NIY05_13885 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIY05_13890 PF02590 Predicted SPOUT methyltransferase NIY05_13895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NIY05_13905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIY05_13905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIY05_13910 PF04060 Putative Fe-S cluster NIY05_13915 PF10576 Iron-sulfur binding domain of endonuclease III NIY05_13915 PF00633 Helix-hairpin-helix motif NIY05_13915 PF00730 HhH-GPD superfamily base excision DNA repair protein NIY05_13925 PF05191 Adenylate kinase, active site lid NIY05_13940 PF03717 Penicillin-binding Protein dimerisation domain NIY05_13940 PF00905 Penicillin binding protein transpeptidase domain NIY05_13955 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY05_13960 PF01730 UreF NIY05_13965 PF05194 UreE urease accessory protein, C-terminal domain NIY05_13965 PF02814 UreE urease accessory protein, N-terminal domain NIY05_13970 PF01979 Amidohydrolase family NIY05_13970 PF00449 Urease alpha-subunit, N-terminal domain NIY05_13975 PF00699 Urease beta subunit NIY05_13980 PF00547 Urease, gamma subunit NIY05_13985 PF01774 UreD urease accessory protein NIY05_14000 PF00463 Isocitrate lyase family NIY05_14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_14005 PF03466 LysR substrate binding domain NIY05_14010 PF00571 CBS domain NIY05_14010 PF03471 Transporter associated domain NIY05_14010 PF01595 Cyclin M transmembrane N-terminal domain NIY05_14015 PF03600 Citrate transporter NIY05_14030 PF00009 Elongation factor Tu GTP binding domain NIY05_14035 PF01507 Phosphoadenosine phosphosulfate reductase family NIY05_14045 PF14052 Capsule assembly protein Wzi NIY05_14050 PF00152 tRNA synthetases class II (D, K and N) NIY05_14050 PF01336 OB-fold nucleic acid binding domain NIY05_14065 PF00301 Rubredoxin NIY05_14070 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_14070 PF18113 Rubredoxin binding C-terminal domain NIY05_14075 PF00561 alpha/beta hydrolase fold NIY05_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_14080 PF03466 LysR substrate binding domain NIY05_14090 PF02503 Polyphosphate kinase middle domain NIY05_14090 PF13089 Polyphosphate kinase N-terminal domain NIY05_14090 PF13090 Polyphosphate kinase C-terminal domain 2 NIY05_14090 PF17941 Polyphosphate kinase C-terminal domain 1 NIY05_14095 PF00912 Transglycosylase NIY05_14100 PF01694 Rhomboid family NIY05_14110 PF00005 ABC transporter NIY05_14115 PF13472 GDSL-like Lipase/Acylhydrolase family NIY05_14120 PF00484 Carbonic anhydrase NIY05_14125 PF00561 alpha/beta hydrolase fold NIY05_14135 PF07715 TonB-dependent Receptor Plug Domain NIY05_14135 PF00593 TonB dependent receptor NIY05_14140 PF01521 Iron-sulphur cluster biosynthesis NIY05_14140 PF01106 NifU-like domain NIY05_14150 PF00884 Sulfatase NIY05_14155 PF03781 Sulfatase-modifying factor enzyme 1 NIY05_14170 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_14175 PF01384 Phosphate transporter family NIY05_14180 PF02574 Homocysteine S-methyltransferase NIY05_14180 PF00809 Pterin binding enzyme NIY05_14180 PF02310 B12 binding domain NIY05_14180 PF02607 B12 binding domain NIY05_14180 PF02965 Vitamin B12 dependent methionine synthase, activation domain NIY05_14185 PF02779 Transketolase, pyrimidine binding domain NIY05_14185 PF02780 Transketolase, C-terminal domain NIY05_14190 PF00456 Transketolase, thiamine diphosphate binding domain NIY05_14195 PF07690 Major Facilitator Superfamily NIY05_14205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_14205 PF03466 LysR substrate binding domain NIY05_14215 PF01263 Aldose 1-epimerase NIY05_14220 PF07690 Major Facilitator Superfamily NIY05_14225 PF12833 Helix-turn-helix domain NIY05_14225 PF02311 AraC-like ligand binding domain NIY05_14230 PF04960 Glutaminase NIY05_14235 PF01327 Polypeptide deformylase NIY05_14240 PF07690 Major Facilitator Superfamily NIY05_14250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY05_14250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY05_14250 PF00205 Thiamine pyrophosphate enzyme, central domain NIY05_14255 PF00171 Aldehyde dehydrogenase family NIY05_14260 PF01958 Domain of unknown function DUF108 NIY05_14260 PF03447 Homoserine dehydrogenase, NAD binding domain NIY05_14270 PF12697 Alpha/beta hydrolase family NIY05_14280 PF07690 Major Facilitator Superfamily NIY05_14285 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_14285 PF14759 Reductase C-terminal NIY05_14290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY05_14300 PF00355 Rieske [2Fe-2S] domain NIY05_14310 PF00355 Rieske [2Fe-2S] domain NIY05_14315 PF09339 IclR helix-turn-helix domain NIY05_14315 PF01614 Bacterial transcriptional regulator NIY05_14330 PF00378 Enoyl-CoA hydratase/isomerase NIY05_14340 PF00535 Glycosyl transferase family 2 NIY05_14345 PF14883 Hypothetical glycosyl hydrolase family 13 NIY05_14345 PF01522 Polysaccharide deacetylase NIY05_14350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY05_14355 PF07152 YaeQ protein NIY05_14360 PF00375 Sodium:dicarboxylate symporter family NIY05_14365 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY05_14365 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIY05_14375 PF03061 Thioesterase superfamily NIY05_14385 PF02028 BCCT, betaine/carnitine/choline family transporter NIY05_14390 PF02028 BCCT, betaine/carnitine/choline family transporter NIY05_14395 PF13977 BetI-type transcriptional repressor, C-terminal NIY05_14395 PF00440 Bacterial regulatory proteins, tetR family NIY05_14400 PF00171 Aldehyde dehydrogenase family NIY05_14405 PF05199 GMC oxidoreductase NIY05_14405 PF00732 GMC oxidoreductase NIY05_14410 PF06039 Malate:quinone oxidoreductase (Mqo) NIY05_14420 PF02574 Homocysteine S-methyltransferase NIY05_14425 PF13520 Amino acid permease NIY05_14450 PF01126 Heme oxygenase NIY05_14460 PF04575 Protein of unknown function (DUF560) NIY05_14470 PF00593 TonB dependent receptor NIY05_14470 PF07715 TonB-dependent Receptor Plug Domain NIY05_14480 PF04542 Sigma-70 region 2 NIY05_14480 PF08281 Sigma-70, region 4 NIY05_14490 PF00701 Dihydrodipicolinate synthetase family NIY05_14495 PF00083 Sugar (and other) transporter NIY05_14515 PF01026 TatD related DNase NIY05_14530 PF07693 KAP family P-loop domain NIY05_14550 PF00436 Single-strand binding protein family NIY05_14605 PF00589 Phage integrase family NIY05_14605 PF13356 Arm DNA-binding domain NIY05_14645 PF10544 T5orf172 domain NIY05_14650 PF13614 AAA domain NIY05_14670 PF00905 Penicillin binding protein transpeptidase domain NIY05_14750 PF00712 DNA polymerase III beta subunit, N-terminal domain NIY05_14750 PF02767 DNA polymerase III beta subunit, central domain NIY05_14750 PF02768 DNA polymerase III beta subunit, C-terminal domain NIY05_14790 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NIY05_14940 PF07007 Lysozyme inhibitor LprI NIY05_14985 PF01695 IstB-like ATP binding protein NIY05_14995 PF00145 C-5 cytosine-specific DNA methylase NIY05_15040 PF01381 Helix-turn-helix NIY05_15040 PF00717 Peptidase S24-like NIY05_15075 PF00929 Exonuclease NIY05_15150 PF07690 Major Facilitator Superfamily NIY05_15155 PF13533 Biotin-lipoyl like NIY05_15160 PF03061 Thioesterase superfamily NIY05_15165 PF00490 Delta-aminolevulinic acid dehydratase NIY05_15170 PF01266 FAD dependent oxidoreductase NIY05_15175 PF08338 Domain of unknown function (DUF1731) NIY05_15175 PF01370 NAD dependent epimerase/dehydratase family NIY05_15195 PF00149 Calcineurin-like phosphoesterase NIY05_15195 PF12320 Type 5 capsule protein repressor C-terminal domain NIY05_15205 PF01168 Alanine racemase, N-terminal domain NIY05_15210 PF00437 Type II/IV secretion system protein NIY05_15215 PF00437 Type II/IV secretion system protein NIY05_15220 PF01475 Ferric uptake regulator family NIY05_15225 PF04355 SmpA / OmlA family NIY05_15230 PF03658 RnfH family Ubiquitin NIY05_15240 PF01814 Hemerythrin HHE cation binding domain NIY05_15245 PF13230 Glutamine amidotransferases class-II NIY05_15255 PF00696 Amino acid kinase family NIY05_15260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY05_15260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY05_15260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY05_15260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY05_15265 PF00692 dUTPase NIY05_15270 PF13361 UvrD-like helicase C-terminal domain NIY05_15270 PF00580 UvrD/REP helicase N-terminal domain NIY05_15275 PF00691 OmpA family NIY05_15275 PF13488 Glycine zipper NIY05_15280 PF01553 Acyltransferase NIY05_15290 PF03775 Septum formation inhibitor MinC, C-terminal domain NIY05_15295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIY05_15300 PF03776 Septum formation topological specificity factor MinE NIY05_15320 PF01810 LysE type translocator NIY05_15325 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NIY05_15325 PF01580 FtsK/SpoIIIE family NIY05_15325 PF09397 Ftsk gamma domain NIY05_15325 PF17854 FtsK alpha domain NIY05_15330 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY05_15335 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NIY05_15340 PF04377 Arginine-tRNA-protein transferase, C terminus NIY05_15340 PF04376 Arginine-tRNA-protein transferase, N terminus NIY05_15345 PF00583 Acetyltransferase (GNAT) family NIY05_15360 PF03144 Elongation factor Tu domain 2 NIY05_15360 PF03143 Elongation factor Tu C-terminal domain NIY05_15360 PF00009 Elongation factor Tu GTP binding domain NIY05_15365 PF14492 Elongation Factor G, domain II NIY05_15365 PF03764 Elongation factor G, domain IV NIY05_15365 PF00009 Elongation factor Tu GTP binding domain NIY05_15365 PF03144 Elongation factor Tu domain 2 NIY05_15365 PF00679 Elongation factor G C-terminus NIY05_15370 PF00177 Ribosomal protein S7p/S5e NIY05_15375 PF00164 Ribosomal protein S12/S23 NIY05_15385 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_15385 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_15390 PF03653 Uncharacterised protein family (UPF0093) NIY05_15395 PF05726 Pirin C-terminal cupin domain NIY05_15395 PF02678 Pirin NIY05_15405 PF02540 NAD synthase NIY05_15405 PF00795 Carbon-nitrogen hydrolase NIY05_15420 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY05_15420 PF00175 Oxidoreductase NAD-binding domain NIY05_15420 PF00970 Oxidoreductase FAD-binding domain NIY05_15425 PF00171 Aldehyde dehydrogenase family NIY05_15430 PF00355 Rieske [2Fe-2S] domain NIY05_15430 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY05_15435 PF07859 alpha/beta hydrolase fold NIY05_15440 PF02028 BCCT, betaine/carnitine/choline family transporter NIY05_15445 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY05_15450 PF03466 LysR substrate binding domain NIY05_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_15470 PF00037 4Fe-4S binding domain NIY05_15475 PF01467 Cytidylyltransferase-like NIY05_15480 PF01668 SmpB protein NIY05_15485 PF03358 NADPH-dependent FMN reductase NIY05_15490 PF02578 Multi-copper polyphenol oxidoreductase laccase NIY05_15495 PF01479 S4 domain NIY05_15495 PF00849 RNA pseudouridylate synthase NIY05_15500 PF13525 Outer membrane lipoprotein NIY05_15505 PF10410 DnaB-helicase binding domain of primase NIY05_15505 PF08278 DNA primase DnaG DnaB-binding NIY05_15505 PF08275 DNA primase catalytic core, N-terminal domain NIY05_15505 PF01807 CHC2 zinc finger NIY05_15510 PF01488 Shikimate / quinate 5-dehydrogenase NIY05_15510 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NIY05_15510 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NIY05_15520 PF03550 Outer membrane lipoprotein LolB NIY05_15525 PF08544 GHMP kinases C terminal NIY05_15525 PF00288 GHMP kinases N terminal domain NIY05_15550 PF14572 Phosphoribosyl synthetase-associated domain NIY05_15550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIY05_15555 PF01386 Ribosomal L25p family NIY05_15560 PF01195 Peptidyl-tRNA hydrolase NIY05_15565 PF02261 Aspartate decarboxylase NIY05_15580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIY05_15590 PF02581 Thiamine monophosphate synthase NIY05_15590 PF03070 TENA/THI-4/PQQC family NIY05_15590 PF08543 Phosphomethylpyrimidine kinase NIY05_15595 PF01476 LysM domain NIY05_15595 PF04972 BON domain NIY05_15600 PF00550 Phosphopantetheine attachment site NIY05_15610 PF00698 Acyl transferase domain NIY05_15615 PF01783 Ribosomal L32p protein family NIY05_15620 PF02620 Large ribosomal RNA subunit accumulation protein YceD NIY05_15625 PF04315 Elongation factor P hydroxylase NIY05_15630 PF01300 Telomere recombination NIY05_15635 PF02616 Segregation and condensation protein ScpA NIY05_15640 PF04079 Segregation and condensation complex subunit ScpB NIY05_15645 PF00849 RNA pseudouridylate synthase NIY05_15645 PF01479 S4 domain NIY05_15660 PF00155 Aminotransferase class I and II NIY05_15665 PF00202 Aminotransferase class-III NIY05_15665 PF06968 Biotin and Thiamin Synthesis associated domain NIY05_15665 PF04055 Radical SAM superfamily NIY05_15670 PF12697 Alpha/beta hydrolase family NIY05_15670 PF08241 Methyltransferase domain NIY05_15675 PF02358 Trehalose-phosphatase NIY05_15680 PF00982 Glycosyltransferase family 20 NIY05_15685 PF07690 Major Facilitator Superfamily NIY05_15690 PF00210 Ferritin-like domain NIY05_15695 PF12826 Helix-hairpin-helix motif NIY05_15695 PF03120 NAD-dependent DNA ligase OB-fold domain NIY05_15695 PF01653 NAD-dependent DNA ligase adenylation domain NIY05_15695 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NIY05_15695 PF00533 BRCA1 C Terminus (BRCT) domain NIY05_15705 PF02463 RecF/RecN/SMC N terminal domain NIY05_15705 PF06470 SMC proteins Flexible Hinge Domain NIY05_15715 PF01925 Sulfite exporter TauE/SafE NIY05_15725 PF03309 Type III pantothenate kinase NIY05_15730 PF02978 Signal peptide binding domain NIY05_15730 PF02881 SRP54-type protein, helical bundle domain NIY05_15730 PF00448 SRP54-type protein, GTPase domain NIY05_15740 PF01207 Dihydrouridine synthase (Dus) NIY05_15780 PF00692 dUTPase NIY05_15795 PF01048 Phosphorylase superfamily NIY05_15800 PF10609 NUBPL iron-transfer P-loop NTPase NIY05_15810 PF01588 Putative tRNA binding domain NIY05_15810 PF09334 tRNA synthetases class I (M) NIY05_15835 PF13533 Biotin-lipoyl like NIY05_15840 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_15855 PF05552 Conserved TM helix NIY05_15870 PF00175 Oxidoreductase NAD-binding domain NIY05_15870 PF00970 Oxidoreductase FAD-binding domain NIY05_15875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_15875 PF03466 LysR substrate binding domain NIY05_15880 PF00313 'Cold-shock' DNA-binding domain NIY05_15890 PF00361 Proton-conducting membrane transporter NIY05_15895 PF00361 Proton-conducting membrane transporter NIY05_15900 PF00361 Proton-conducting membrane transporter NIY05_15900 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIY05_15905 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIY05_15910 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIY05_15915 PF12838 4Fe-4S dicluster domain NIY05_15920 PF00146 NADH dehydrogenase NIY05_15925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY05_15925 PF00384 Molybdopterin oxidoreductase NIY05_15925 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIY05_15930 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIY05_15930 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIY05_15930 PF10531 SLBB domain NIY05_15940 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIY05_15940 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIY05_15945 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIY05_15950 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIY05_15955 PF17151 Periplasmic sensor domain NIY05_15955 PF00990 Diguanylate cyclase, GGDEF domain NIY05_15965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_15965 PF00512 His Kinase A (phospho-acceptor) domain NIY05_15965 PF00672 HAMP domain NIY05_15970 PF00072 Response regulator receiver domain NIY05_15970 PF00486 Transcriptional regulatory protein, C terminal NIY05_15980 PF00317 Ribonucleotide reductase, all-alpha domain NIY05_15980 PF03477 ATP cone domain NIY05_15980 PF02867 Ribonucleotide reductase, barrel domain NIY05_15990 PF00268 Ribonucleotide reductase, small chain NIY05_16000 PF00672 HAMP domain NIY05_16000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_16000 PF00512 His Kinase A (phospho-acceptor) domain NIY05_16000 PF13755 Sensor N-terminal transmembrane domain NIY05_16000 PF13756 Stimulus-sensing domain NIY05_16070 PF13360 PQQ-like domain NIY05_16070 PF01011 PQQ enzyme repeat NIY05_16095 PF02567 Phenazine biosynthesis-like protein NIY05_16120 PF01613 Flavin reductase like domain NIY05_16125 PF08267 Cobalamin-independent synthase, N-terminal domain NIY05_16125 PF01717 Cobalamin-independent synthase, Catalytic domain NIY05_16135 PF03466 LysR substrate binding domain NIY05_16135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_16140 PF01810 LysE type translocator NIY05_16150 PF12833 Helix-turn-helix domain NIY05_16150 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY05_16155 PF07687 Peptidase dimerisation domain NIY05_16155 PF01546 Peptidase family M20/M25/M40 NIY05_16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_16165 PF03466 LysR substrate binding domain NIY05_16170 PF07690 Major Facilitator Superfamily NIY05_16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_16180 PF03466 LysR substrate binding domain NIY05_16185 PF00890 FAD binding domain NIY05_16185 PF14537 Cytochrome c3 NIY05_16195 PF02515 CoA-transferase family III NIY05_16200 PF07690 Major Facilitator Superfamily NIY05_16205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_16205 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_16205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_16210 PF03466 LysR substrate binding domain NIY05_16210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_16215 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_16215 PF00107 Zinc-binding dehydrogenase NIY05_16220 PF00962 Adenosine/AMP deaminase NIY05_16245 PF02445 Quinolinate synthetase A protein NIY05_16250 PF01960 ArgJ family NIY05_16255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY05_16255 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIY05_16260 PF00893 Small Multidrug Resistance protein NIY05_16270 PF05275 Copper resistance protein B precursor (CopB) NIY05_16275 PF00394 Multicopper oxidase NIY05_16275 PF07731 Multicopper oxidase NIY05_16275 PF07732 Multicopper oxidase NIY05_16290 PF00834 Ribulose-phosphate 3 epimerase family NIY05_16300 PF00756 Putative esterase NIY05_16310 PF04445 Putative SAM-dependent methyltransferase NIY05_16315 PF00814 Glycoprotease family NIY05_16320 PF00132 Bacterial transferase hexapeptide (six repeats) NIY05_16325 PF00293 NUDIX domain NIY05_16365 PF04715 Anthranilate synthase component I, N terminal region NIY05_16365 PF00425 chorismate binding enzyme NIY05_16370 PF00155 Aminotransferase class I and II NIY05_16375 PF00815 Histidinol dehydrogenase NIY05_16380 PF01634 ATP phosphoribosyltransferase NIY05_16385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIY05_16390 PF01722 BolA-like protein NIY05_16395 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NIY05_16400 PF00309 Sigma-54 factor, Activator interacting domain (AID) NIY05_16400 PF04552 Sigma-54, DNA binding domain NIY05_16400 PF04963 Sigma-54 factor, core binding domain NIY05_16445 PF00795 Carbon-nitrogen hydrolase NIY05_16455 PF01047 MarR family NIY05_16460 PF02566 OsmC-like protein NIY05_16465 PF00437 Type II/IV secretion system protein NIY05_16485 PF01367 5'-3' exonuclease, C-terminal SAM fold NIY05_16485 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NIY05_16485 PF00476 DNA polymerase family A NIY05_16485 PF01612 3'-5' exonuclease NIY05_16490 PF02325 YGGT family NIY05_16495 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIY05_16495 PF03807 NADP oxidoreductase coenzyme F420-dependent NIY05_16500 PF01171 PP-loop family NIY05_16500 PF09179 TilS substrate binding domain NIY05_16500 PF11734 TilS substrate C-terminal domain NIY05_16505 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NIY05_16510 PF02541 Ppx/GppA phosphatase family NIY05_16515 PF00085 Thioredoxin NIY05_16520 PF07497 Rho termination factor, RNA-binding domain NIY05_16520 PF07498 Rho termination factor, N-terminal domain NIY05_16520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY05_16535 PF00216 Bacterial DNA-binding protein NIY05_16540 PF03484 tRNA synthetase B5 domain NIY05_16540 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NIY05_16540 PF01588 Putative tRNA binding domain NIY05_16540 PF03147 Ferredoxin-fold anticodon binding domain NIY05_16540 PF03483 B3/4 domain NIY05_16545 PF01409 tRNA synthetases class II core domain (F) NIY05_16545 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NIY05_16565 PF00453 Ribosomal protein L20 NIY05_16570 PF01632 Ribosomal protein L35 NIY05_16580 PF07690 Major Facilitator Superfamily NIY05_16585 PF09335 SNARE associated Golgi protein NIY05_16590 PF00043 Glutathione S-transferase, C-terminal domain NIY05_16590 PF02798 Glutathione S-transferase, N-terminal domain NIY05_16595 PF00707 Translation initiation factor IF-3, C-terminal domain NIY05_16595 PF05198 Translation initiation factor IF-3, N-terminal domain NIY05_16600 PF03129 Anticodon binding domain NIY05_16600 PF02824 TGS domain NIY05_16600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY05_16600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIY05_16605 PF00501 AMP-binding enzyme NIY05_16605 PF13193 AMP-binding enzyme C-terminal domain NIY05_16610 PF04751 Protein of unknown function (DUF615) NIY05_16615 PF00381 PTS HPr component phosphorylation site NIY05_16620 PF03668 P-loop ATPase protein family NIY05_16625 PF02569 Pantoate-beta-alanine ligase NIY05_16630 PF02548 Ketopantoate hydroxymethyltransferase NIY05_16635 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NIY05_16640 PF01743 Poly A polymerase head domain NIY05_16640 PF12626 Polymerase A arginine-rich C-terminus NIY05_16640 PF12627 Probable RNA and SrmB- binding site of polymerase A NIY05_16650 PF03819 MazG nucleotide pyrophosphohydrolase domain NIY05_16660 PF13291 ACT domain NIY05_16660 PF04607 Region found in RelA / SpoT proteins NIY05_16660 PF02824 TGS domain NIY05_16665 PF05958 tRNA (Uracil-5-)-methyltransferase NIY05_16675 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_16680 PF00672 HAMP domain NIY05_16680 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIY05_16680 PF00072 Response regulator receiver domain NIY05_16680 PF00512 His Kinase A (phospho-acceptor) domain NIY05_16680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_16680 PF01627 Hpt domain NIY05_16685 PF00378 Enoyl-CoA hydratase/isomerase NIY05_16690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY05_16690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY05_16695 PF01261 Xylose isomerase-like TIM barrel NIY05_16705 PF00106 short chain dehydrogenase NIY05_16710 PF02233 NAD(P) transhydrogenase beta subunit NIY05_16715 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NIY05_16720 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NIY05_16720 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NIY05_16725 PF00892 EamA-like transporter family NIY05_16735 PF07690 Major Facilitator Superfamily NIY05_16740 PF01207 Dihydrouridine synthase (Dus) NIY05_16750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_16750 PF03466 LysR substrate binding domain NIY05_16760 PF00899 ThiF family NIY05_16770 PF00330 Aconitase family (aconitate hydratase) NIY05_16770 PF00694 Aconitase C-terminal domain NIY05_16775 PF01026 TatD related DNase NIY05_16790 PF00009 Elongation factor Tu GTP binding domain NIY05_16790 PF03144 Elongation factor Tu domain 2 NIY05_16790 PF16658 Class II release factor RF3, C-terminal domain NIY05_16810 PF03707 Bacterial signalling protein N terminal repeat NIY05_16810 PF00990 Diguanylate cyclase, GGDEF domain NIY05_16810 PF00563 EAL domain NIY05_16815 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NIY05_16815 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NIY05_16820 PF10369 Small subunit of acetolactate synthase NIY05_16825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY05_16825 PF00205 Thiamine pyrophosphate enzyme, central domain NIY05_16825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY05_16835 PF09334 tRNA synthetases class I (M) NIY05_16835 PF13603 Leucyl-tRNA synthetase, Domain 2 NIY05_16835 PF00133 tRNA synthetases class I (I, L, M and V) NIY05_16835 PF08264 Anticodon-binding domain of tRNA NIY05_16850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY05_16855 PF12704 MacB-like periplasmic core domain NIY05_16855 PF00005 ABC transporter NIY05_16855 PF02687 FtsX-like permease family NIY05_16860 PF02321 Outer membrane efflux protein NIY05_16875 PF00929 Exonuclease NIY05_16880 PF03193 RsgA GTPase NIY05_16890 PF00462 Glutaredoxin NIY05_16895 PF02556 Preprotein translocase subunit SecB NIY05_16910 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_16910 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_16925 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_16925 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_16935 PF04820 Tryptophan halogenase NIY05_16955 PF00221 Aromatic amino acid lyase NIY05_16970 PF00501 AMP-binding enzyme NIY05_16970 PF13193 AMP-binding enzyme C-terminal domain NIY05_16980 PF00550 Phosphopantetheine attachment site NIY05_16985 PF00550 Phosphopantetheine attachment site NIY05_17000 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NIY05_17000 PF01926 50S ribosome-binding GTPase NIY05_17005 PF13360 PQQ-like domain NIY05_17015 PF13393 Histidyl-tRNA synthetase NIY05_17015 PF03129 Anticodon binding domain NIY05_17020 PF04551 GcpE protein NIY05_17025 PF13464 Domain of unknown function (DUF4115) NIY05_17035 PF04055 Radical SAM superfamily NIY05_17040 PF00334 Nucleoside diphosphate kinase NIY05_17045 PF04384 Iron-sulphur cluster assembly NIY05_17050 PF01569 PAP2 superfamily NIY05_17055 PF13439 Glycosyltransferase Family 4 NIY05_17055 PF00534 Glycosyl transferases group 1 NIY05_17060 PF11818 C-terminal domain of tail specific protease (DUF3340) NIY05_17060 PF00595 PDZ domain NIY05_17060 PF03572 Peptidase family S41 NIY05_17060 PF17804 Tail specific protease N-terminal domain NIY05_17065 PF00933 Glycosyl hydrolase family 3 N terminal domain NIY05_17075 PF00561 alpha/beta hydrolase fold NIY05_17080 PF00171 Aldehyde dehydrogenase family NIY05_17085 PF00171 Aldehyde dehydrogenase family NIY05_17090 PF01202 Shikimate kinase NIY05_17095 PF02447 GntP family permease NIY05_17100 PF01081 KDPG and KHG aldolase NIY05_17105 PF00920 Dehydratase family NIY05_17110 PF00871 Acetokinase family NIY05_17115 PF07085 DRTGG domain NIY05_17115 PF01515 Phosphate acetyl/butaryl transferase NIY05_17120 PF05681 Fumarate hydratase (Fumerase) NIY05_17120 PF05683 Fumarase C-terminus NIY05_17135 PF10431 C-terminal, D2-small domain, of ClpB protein NIY05_17135 PF06689 ClpX C4-type zinc finger NIY05_17135 PF07724 AAA domain (Cdc48 subfamily) NIY05_17140 PF00574 Clp protease NIY05_17145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY05_17145 PF05697 Bacterial trigger factor protein (TF) NIY05_17145 PF05698 Bacterial trigger factor protein (TF) C-terminus NIY05_17150 PF07715 TonB-dependent Receptor Plug Domain NIY05_17150 PF00593 TonB dependent receptor NIY05_17155 PF13640 2OG-Fe(II) oxygenase superfamily NIY05_17155 PF18331 PKHD-type hydroxylase C-terminal domain NIY05_17160 PF00682 HMGL-like NIY05_17160 PF08502 LeuA allosteric (dimerisation) domain NIY05_17165 PF00561 alpha/beta hydrolase fold NIY05_17170 PF07021 Methionine biosynthesis protein MetW NIY05_17170 PF00561 alpha/beta hydrolase fold NIY05_17180 PF01725 Ham1 family NIY05_17190 PF02416 mttA/Hcf106 family NIY05_17195 PF02416 mttA/Hcf106 family NIY05_17200 PF00902 Sec-independent protein translocase protein (TatC) NIY05_17220 PF01790 Prolipoprotein diacylglyceryl transferase NIY05_17235 PF00303 Thymidylate synthase NIY05_17240 PF00186 Dihydrofolate reductase NIY05_17250 PF01625 Peptide methionine sulfoxide reductase NIY05_17260 PF01618 MotA/TolQ/ExbB proton channel family NIY05_17270 PF00551 Formyl transferase NIY05_17270 PF01842 ACT domain NIY05_17280 PF00171 Aldehyde dehydrogenase family NIY05_17285 PF00830 Ribosomal L28 family NIY05_17290 PF00471 Ribosomal protein L33 NIY05_17295 PF00999 Sodium/hydrogen exchanger family NIY05_17295 PF02254 TrkA-N domain NIY05_17315 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NIY05_17320 PF00580 UvrD/REP helicase N-terminal domain NIY05_17320 PF13361 UvrD-like helicase C-terminal domain NIY05_17335 PF08272 Topoisomerase I zinc-ribbon-like NIY05_17335 PF01131 DNA topoisomerase NIY05_17335 PF01751 Toprim domain NIY05_17335 PF01396 Topoisomerase DNA binding C4 zinc finger NIY05_17345 PF01638 HxlR-like helix-turn-helix NIY05_17350 PF08240 Alcohol dehydrogenase GroES-like domain NIY05_17350 PF00107 Zinc-binding dehydrogenase NIY05_17355 PF04102 SlyX NIY05_17360 PF12848 ABC transporter NIY05_17360 PF00005 ABC transporter NIY05_17360 PF16326 ABC transporter C-terminal domain NIY05_17365 PF01810 LysE type translocator NIY05_17370 PF03279 Bacterial lipid A biosynthesis acyltransferase NIY05_17380 PF00375 Sodium:dicarboxylate symporter family NIY05_17390 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIY05_17390 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIY05_17410 PF01416 tRNA pseudouridine synthase NIY05_17420 PF01176 Translation initiation factor 1A / IF-1 NIY05_17435 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY05_17445 PF00694 Aconitase C-terminal domain NIY05_17450 PF00330 Aconitase family (aconitate hydratase) NIY05_17460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_17460 PF03466 LysR substrate binding domain NIY05_17480 PF00293 NUDIX domain NIY05_17485 PF01590 GAF domain NIY05_17485 PF05524 PEP-utilising enzyme, N-terminal NIY05_17485 PF00391 PEP-utilising enzyme, mobile domain NIY05_17485 PF02896 PEP-utilising enzyme, TIM barrel domain NIY05_17490 PF00141 Peroxidase NIY05_17495 PF12706 Beta-lactamase superfamily domain NIY05_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_17500 PF03466 LysR substrate binding domain NIY05_17510 PF02798 Glutathione S-transferase, N-terminal domain NIY05_17515 PF08279 HTH domain NIY05_17515 PF13280 WYL domain NIY05_17520 PF13419 Haloacid dehalogenase-like hydrolase NIY05_17525 PF00849 RNA pseudouridylate synthase NIY05_17525 PF01479 S4 domain NIY05_17530 PF12111 Polyribonucleotide phosphorylase C terminal NIY05_17530 PF10150 Ribonuclease E/G family NIY05_17530 PF00575 S1 RNA binding domain NIY05_17535 PF00501 AMP-binding enzyme NIY05_17535 PF13193 AMP-binding enzyme C-terminal domain NIY05_17550 PF03466 LysR substrate binding domain NIY05_17550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_17555 PF00106 short chain dehydrogenase NIY05_17560 PF06969 HemN C-terminal domain NIY05_17560 PF04055 Radical SAM superfamily NIY05_17570 PF01554 MatE NIY05_17575 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_17575 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY05_17575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_17580 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY05_17580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_17585 PF03109 ABC1 family NIY05_17590 PF01197 Ribosomal protein L31 NIY05_17605 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NIY05_17625 PF03884 DNA gyrase inhibitor YacG NIY05_17630 PF00753 Metallo-beta-lactamase superfamily NIY05_17635 PF00762 Ferrochelatase NIY05_17645 PF01177 Asp/Glu/Hydantoin racemase NIY05_17660 PF01206 Sulfurtransferase TusA NIY05_17665 PF03471 Transporter associated domain NIY05_17665 PF00571 CBS domain NIY05_17670 PF00795 Carbon-nitrogen hydrolase NIY05_17675 PF01588 Putative tRNA binding domain NIY05_17685 PF07963 Prokaryotic N-terminal methylation motif NIY05_17685 PF08334 Type II secretion system (T2SS), protein G NIY05_17690 PF00482 Type II secretion system (T2SS), protein F NIY05_17695 PF18074 Primosomal protein N C-terminal domain NIY05_17695 PF00270 DEAD/DEAH box helicase NIY05_17695 PF00271 Helicase conserved C-terminal domain NIY05_17695 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NIY05_17695 PF17764 3′ DNA-binding domain (3′BD) NIY05_17700 PF02254 TrkA-N domain NIY05_17700 PF00999 Sodium/hydrogen exchanger family NIY05_17705 PF01430 Hsp33 protein NIY05_17715 PF00226 DnaJ domain NIY05_17715 PF01556 DnaJ C terminal domain NIY05_17725 PF01544 CorA-like Mg2+ transporter protein NIY05_17730 PF00013 KH domain NIY05_17730 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NIY05_17730 PF01138 3' exoribonuclease family, domain 1 NIY05_17730 PF00575 S1 RNA binding domain NIY05_17730 PF03725 3' exoribonuclease family, domain 2 NIY05_17735 PF00312 Ribosomal protein S15 NIY05_17740 PF00144 Beta-lactamase NIY05_17745 PF13538 UvrD-like helicase C-terminal domain NIY05_17750 PF13361 UvrD-like helicase C-terminal domain NIY05_17750 PF12705 PD-(D/E)XK nuclease superfamily NIY05_17750 PF00580 UvrD/REP helicase N-terminal domain NIY05_17755 PF17946 RecC C-terminal domain NIY05_17765 PF03976 Polyphosphate kinase 2 (PPK2) NIY05_17775 PF01209 ubiE/COQ5 methyltransferase family NIY05_17785 PF03109 ABC1 family NIY05_17790 PF01494 FAD binding domain NIY05_17795 PF01502 Phosphoribosyl-AMP cyclohydrolase NIY05_17810 PF13244 Domain of unknown function (DUF4040) NIY05_17810 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NIY05_17810 PF00361 Proton-conducting membrane transporter NIY05_17810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIY05_17815 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIY05_17820 PF00361 Proton-conducting membrane transporter NIY05_17825 PF01899 Na+/H+ ion antiporter subunit NIY05_17830 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NIY05_17835 PF03334 Na+/H+ antiporter subunit NIY05_17840 PF02033 Ribosome-binding factor A NIY05_17845 PF04760 Translation initiation factor IF-2, N-terminal region NIY05_17845 PF00009 Elongation factor Tu GTP binding domain NIY05_17845 PF11987 Translation-initiation factor 2 NIY05_17845 PF08364 Bacterial translation initiation factor IF-2 associated region NIY05_17850 PF13184 NusA-like KH domain NIY05_17850 PF08529 NusA N-terminal domain NIY05_17850 PF00575 S1 RNA binding domain NIY05_17855 PF02576 RimP N-terminal domain NIY05_17855 PF17384 RimP C-terminal SH3 domain NIY05_17875 PF03840 Preprotein translocase SecG subunit NIY05_17880 PF00121 Triosephosphate isomerase NIY05_17885 PF00437 Type II/IV secretion system protein NIY05_17885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIY05_17890 PF00482 Type II secretion system (T2SS), protein F NIY05_17900 PF06750 Bacterial Peptidase A24 N-terminal domain NIY05_17900 PF01478 Type IV leader peptidase family NIY05_17905 PF01121 Dephospho-CoA kinase NIY05_17915 PF00588 SpoU rRNA Methylase family NIY05_17915 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIY05_17920 PF06865 Pyrimidine/purine nucleoside phosphorylase NIY05_17930 PF02463 RecF/RecN/SMC N terminal domain NIY05_17935 PF02622 Uncharacterized ACR, COG1678 NIY05_17940 PF03652 Holliday junction resolvase NIY05_17945 PF13533 Biotin-lipoyl like NIY05_17970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY05_17970 PF12833 Helix-turn-helix domain NIY05_17970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIY05_17970 PF02805 Metal binding domain of Ada NIY05_17975 PF01066 CDP-alcohol phosphatidyltransferase NIY05_17985 PF01541 GIY-YIG catalytic domain NIY05_17985 PF02151 UvrB/uvrC motif NIY05_17985 PF08459 UvrC Helix-hairpin-helix N-terminal NIY05_18005 PF00378 Enoyl-CoA hydratase/isomerase NIY05_18005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY05_18005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY05_18010 PF00108 Thiolase, N-terminal domain NIY05_18010 PF02803 Thiolase, C-terminal domain NIY05_18030 PF00376 MerR family regulatory protein NIY05_18030 PF09278 MerR, DNA binding NIY05_18040 PF01323 DSBA-like thioredoxin domain NIY05_18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_18055 PF00183 Hsp90 protein NIY05_18070 PF03553 Na+/H+ antiporter family NIY05_18070 PF13726 Na+-H+ antiporter family NIY05_18075 PF00561 alpha/beta hydrolase fold NIY05_18095 PF04983 RNA polymerase Rpb1, domain 3 NIY05_18095 PF04998 RNA polymerase Rpb1, domain 5 NIY05_18095 PF00623 RNA polymerase Rpb1, domain 2 NIY05_18095 PF05000 RNA polymerase Rpb1, domain 4 NIY05_18095 PF04997 RNA polymerase Rpb1, domain 1 NIY05_18100 PF04563 RNA polymerase beta subunit NIY05_18100 PF04561 RNA polymerase Rpb2, domain 2 NIY05_18100 PF04565 RNA polymerase Rpb2, domain 3 NIY05_18100 PF10385 RNA polymerase beta subunit external 1 domain NIY05_18100 PF00562 RNA polymerase Rpb2, domain 6 NIY05_18100 PF04560 RNA polymerase Rpb2, domain 7 NIY05_18105 PF16320 Ribosomal protein L7/L12 dimerisation domain NIY05_18105 PF00542 Ribosomal protein L7/L12 C-terminal domain NIY05_18110 PF00466 Ribosomal protein L10 NIY05_18115 PF00687 Ribosomal protein L1p/L10e family NIY05_18120 PF00298 Ribosomal protein L11, RNA binding domain NIY05_18120 PF03946 Ribosomal protein L11, N-terminal domain NIY05_18125 PF00467 KOW motif NIY05_18125 PF02357 Transcription termination factor nusG NIY05_18130 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NIY05_18140 PF03143 Elongation factor Tu C-terminal domain NIY05_18140 PF00009 Elongation factor Tu GTP binding domain NIY05_18140 PF03144 Elongation factor Tu domain 2 NIY05_18165 PF00425 chorismate binding enzyme NIY05_18165 PF04715 Anthranilate synthase component I, N terminal region NIY05_18170 PF13419 Haloacid dehalogenase-like hydrolase NIY05_18175 PF12401 Protein of unknown function (DUF2662) NIY05_18175 PF00498 FHA domain NIY05_18180 PF00263 Bacterial type II and III secretion system protein NIY05_18180 PF03958 Bacterial type II/III secretion system short domain NIY05_18195 PF00816 H-NS histone family NIY05_18220 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NIY05_18220 PF03900 Porphobilinogen deaminase, C-terminal domain NIY05_18225 PF04397 LytTr DNA-binding domain NIY05_18225 PF00072 Response regulator receiver domain NIY05_18230 PF07694 5TMR of 5TMR-LYT NIY05_18230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_18230 PF06580 Histidine kinase NIY05_18235 PF14698 Argininosuccinate lyase C-terminal NIY05_18235 PF00206 Lyase NIY05_18240 PF04362 Bacterial Fe(2+) trafficking NIY05_18245 PF01895 PhoU domain NIY05_18250 PF02321 Outer membrane efflux protein NIY05_18255 PF00892 EamA-like transporter family NIY05_18270 PF13667 ThiC-associated domain NIY05_18270 PF01964 Radical SAM ThiC family NIY05_18275 PF00293 NUDIX domain NIY05_18280 PF00149 Calcineurin-like phosphoesterase NIY05_18285 PF01258 Prokaryotic dksA/traR C4-type zinc finger NIY05_18290 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY05_18295 PF01098 Cell cycle protein NIY05_18300 PF02875 Mur ligase family, glutamate ligase domain NIY05_18300 PF08245 Mur ligase middle domain NIY05_18310 PF07664 Ferrous iron transport protein B C terminus NIY05_18310 PF07670 Nucleoside recognition NIY05_18310 PF02421 Ferrous iron transport protein B NIY05_18320 PF02899 Phage integrase, N-terminal SAM-like domain NIY05_18320 PF00589 Phage integrase family NIY05_18325 PF10411 Disulfide bond isomerase protein N-terminus NIY05_18325 PF13098 Thioredoxin-like domain NIY05_18330 PF01842 ACT domain NIY05_18330 PF00742 Homoserine dehydrogenase NIY05_18330 PF03447 Homoserine dehydrogenase, NAD binding domain NIY05_18335 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_18340 PF00768 D-alanyl-D-alanine carboxypeptidase NIY05_18345 PF00196 Bacterial regulatory proteins, luxR family NIY05_18345 PF00072 Response regulator receiver domain NIY05_18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY05_18350 PF00512 His Kinase A (phospho-acceptor) domain NIY05_18355 PF02954 Bacterial regulatory protein, Fis family NIY05_18355 PF00072 Response regulator receiver domain NIY05_18355 PF00158 Sigma-54 interaction domain NIY05_18360 PF03572 Peptidase family S41 NIY05_18360 PF00595 PDZ domain NIY05_18365 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NIY05_18365 PF01676 Metalloenzyme superfamily NIY05_18370 PF03739 Lipopolysaccharide export system permease LptF/LptG NIY05_18380 PF00883 Cytosol aminopeptidase family, catalytic domain NIY05_18380 PF02789 Cytosol aminopeptidase family, N-terminal domain NIY05_18400 PF00677 Lumazine binding domain NIY05_18410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIY05_18410 PF01872 RibD C-terminal domain NIY05_18415 PF03477 ATP cone domain NIY05_18420 PF00909 Ammonium Transporter Family NIY05_18425 PF00543 Nitrogen regulatory protein P-II NIY05_18445 PF01636 Phosphotransferase enzyme family NIY05_18450 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NIY05_18470 PF00440 Bacterial regulatory proteins, tetR family NIY05_18470 PF02909 Tetracyclin repressor-like, C-terminal domain NIY05_18475 PF07690 Major Facilitator Superfamily NIY05_18485 PF00916 Sulfate permease family NIY05_18485 PF01740 STAS domain NIY05_18490 PF00582 Universal stress protein family NIY05_18510 PF00665 Integrase core domain NIY05_18525 PF00155 Aminotransferase class I and II NIY05_18525 PF00392 Bacterial regulatory proteins, gntR family NIY05_18535 PF00701 Dihydrodipicolinate synthetase family NIY05_18550 PF03573 outer membrane porin, OprD family NIY05_18555 PF00719 Inorganic pyrophosphatase NIY05_18570 PF00501 AMP-binding enzyme NIY05_18570 PF13193 AMP-binding enzyme C-terminal domain NIY05_18575 PF00521 DNA gyrase/topoisomerase IV, subunit A NIY05_18575 PF03989 DNA gyrase C-terminal domain, beta-propeller NIY05_18580 PF07690 Major Facilitator Superfamily NIY05_18585 PF03458 UPF0126 domain NIY05_18590 PF02810 SEC-C motif NIY05_18595 PF03471 Transporter associated domain NIY05_18595 PF03741 Integral membrane protein TerC family NIY05_18600 PF03641 Possible lysine decarboxylase NIY05_18605 PF07690 Major Facilitator Superfamily NIY05_18615 PF00817 impB/mucB/samB family NIY05_18615 PF11799 impB/mucB/samB family C-terminal domain NIY05_18615 PF11798 IMS family HHH motif NIY05_18635 PF11842 Domain of unknown function (DUF3362) NIY05_18635 PF04055 Radical SAM superfamily NIY05_18635 PF08497 Radical SAM N-terminal NIY05_18655 PF03358 NADPH-dependent FMN reductase NIY05_18665 PF00291 Pyridoxal-phosphate dependent enzyme NIY05_18725 PF01327 Polypeptide deformylase NIY05_18735 PF02481 DNA recombination-mediator protein A NIY05_18735 PF17782 DprA winged helix domain NIY05_18740 PF01300 Telomere recombination NIY05_18745 PF00892 EamA-like transporter family NIY05_18750 PF00440 Bacterial regulatory proteins, tetR family NIY05_18755 PF07690 Major Facilitator Superfamily NIY05_18765 PF00255 Glutathione peroxidase NIY05_18775 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NIY05_18780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY05_18780 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIY05_18785 PF00231 ATP synthase NIY05_18790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY05_18790 PF00306 ATP synthase alpha/beta chain, C terminal domain NIY05_18790 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIY05_18795 PF00213 ATP synthase delta (OSCP) subunit NIY05_18800 PF00430 ATP synthase B/B' CF(0) NIY05_18805 PF00137 ATP synthase subunit C NIY05_18810 PF00119 ATP synthase A chain NIY05_18830 PF00005 ABC transporter NIY05_18835 PF00950 ABC 3 transport family NIY05_18840 PF01810 LysE type translocator NIY05_18845 PF04261 Dyp-type peroxidase family NIY05_18855 PF00390 Malic enzyme, N-terminal domain NIY05_18855 PF03949 Malic enzyme, NAD binding domain NIY05_18860 PF03485 Arginyl tRNA synthetase N terminal domain NIY05_18860 PF05746 DALR anticodon binding domain NIY05_18860 PF00750 tRNA synthetases class I (R) NIY05_18880 PF05726 Pirin C-terminal cupin domain NIY05_18880 PF02678 Pirin NIY05_18890 PF03551 Transcriptional regulator PadR-like family NIY05_18895 PF01909 Nucleotidyltransferase domain NIY05_18895 PF13427 Domain of unknown function (DUF4111) NIY05_18900 PF00117 Glutamine amidotransferase class-I NIY05_18900 PF00958 GMP synthase C terminal domain NIY05_18900 PF02540 NAD synthase NIY05_18905 PF04286 Protein of unknown function (DUF445) NIY05_18910 PF07681 DoxX NIY05_18915 PF09335 SNARE associated Golgi protein NIY05_18930 PF13614 AAA domain NIY05_18940 PF01722 BolA-like protein NIY05_18955 PF01648 4'-phosphopantetheinyl transferase superfamily NIY05_18960 PF12697 Alpha/beta hydrolase family NIY05_18980 PF16197 Ketoacyl-synthetase C-terminal extension NIY05_18980 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_18980 PF00550 Phosphopantetheine attachment site NIY05_18980 PF08242 Methyltransferase domain NIY05_18980 PF14765 Polyketide synthase dehydratase NIY05_18980 PF00975 Thioesterase domain NIY05_18980 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_18985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_18985 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_18985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_18990 PF00501 AMP-binding enzyme NIY05_18995 PF03472 Autoinducer binding domain NIY05_18995 PF00196 Bacterial regulatory proteins, luxR family NIY05_19005 PF00765 Autoinducer synthase NIY05_19010 PF00083 Sugar (and other) transporter NIY05_19010 PF07690 Major Facilitator Superfamily NIY05_19015 PF00378 Enoyl-CoA hydratase/isomerase NIY05_19020 PF00378 Enoyl-CoA hydratase/isomerase NIY05_19025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY05_19025 PF02770 Acyl-CoA dehydrogenase, middle domain NIY05_19025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY05_19030 PF00501 AMP-binding enzyme NIY05_19030 PF13193 AMP-binding enzyme C-terminal domain NIY05_19035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY05_19035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY05_19040 PF00171 Aldehyde dehydrogenase family NIY05_19050 PF00324 Amino acid permease NIY05_19055 PF00324 Amino acid permease NIY05_19060 PF01042 Endoribonuclease L-PSP NIY05_19065 PF01168 Alanine racemase, N-terminal domain NIY05_19065 PF00842 Alanine racemase, C-terminal domain NIY05_19070 PF01266 FAD dependent oxidoreductase NIY05_19075 PF01037 Lrp/AsnC ligand binding domain NIY05_19085 PF00593 TonB dependent receptor NIY05_19085 PF07715 TonB-dependent Receptor Plug Domain NIY05_19100 PF00849 RNA pseudouridylate synthase NIY05_19115 PF00440 Bacterial regulatory proteins, tetR family NIY05_19115 PF08361 MAATS-type transcriptional repressor, C-terminal region NIY05_19125 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY05_19125 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY05_19160 PF00330 Aconitase family (aconitate hydratase) NIY05_19160 PF00694 Aconitase C-terminal domain NIY05_19165 PF00285 Citrate synthase, C-terminal domain NIY05_19175 PF00392 Bacterial regulatory proteins, gntR family NIY05_19175 PF07729 FCD domain NIY05_19185 PF00155 Aminotransferase class I and II NIY05_19190 PF09330 D-lactate dehydrogenase, membrane binding NIY05_19190 PF01565 FAD binding domain NIY05_19195 PF01070 FMN-dependent dehydrogenase NIY05_19200 PF07729 FCD domain NIY05_19200 PF00392 Bacterial regulatory proteins, gntR family NIY05_19205 PF02652 L-lactate permease NIY05_19210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY05_19210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY05_19210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY05_19210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY05_19215 PF16363 GDP-mannose 4,6 dehydratase NIY05_19220 PF00342 Phosphoglucose isomerase NIY05_19225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIY05_19225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIY05_19225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIY05_19230 PF00483 Nucleotidyl transferase NIY05_19235 PF02397 Bacterial sugar transferase NIY05_19240 PF00535 Glycosyl transferase family 2 NIY05_19270 PF03102 NeuB family NIY05_19270 PF08666 SAF domain NIY05_19285 PF02348 Cytidylyltransferase NIY05_19290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIY05_19295 PF02719 Polysaccharide biosynthesis protein NIY05_19300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIY05_19300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIY05_19300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIY05_19305 PF10531 SLBB domain NIY05_19305 PF02563 Polysaccharide biosynthesis/export protein NIY05_19305 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NIY05_19310 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIY05_19315 PF13614 AAA domain NIY05_19315 PF02706 Chain length determinant protein NIY05_19315 PF13807 G-rich domain on putative tyrosine kinase NIY05_19320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY05_19320 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIY05_19325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIY05_19325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY05_19330 PF03023 Lipid II flippase MurJ NIY05_19335 PF01510 N-acetylmuramoyl-L-alanine amidase NIY05_19340 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NIY05_19340 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NIY05_19355 PF03725 3' exoribonuclease family, domain 2 NIY05_19355 PF01138 3' exoribonuclease family, domain 1 NIY05_19360 PF00487 Fatty acid desaturase NIY05_19365 PF00175 Oxidoreductase NAD-binding domain NIY05_19370 PF00440 Bacterial regulatory proteins, tetR family NIY05_19375 PF08360 QacR-like protein, C-terminal region NIY05_19375 PF00440 Bacterial regulatory proteins, tetR family NIY05_19380 PF01323 DSBA-like thioredoxin domain NIY05_19390 PF13419 Haloacid dehalogenase-like hydrolase NIY05_19395 PF00106 short chain dehydrogenase NIY05_19410 PF00696 Amino acid kinase family NIY05_19410 PF00583 Acetyltransferase (GNAT) family NIY05_19415 PF09084 NMT1/THI5 like NIY05_19420 PF09084 NMT1/THI5 like NIY05_19425 PF00296 Luciferase-like monooxygenase NIY05_19430 PF00528 Binding-protein-dependent transport system inner membrane component NIY05_19435 PF00005 ABC transporter NIY05_19440 PF08362 YcdC-like protein, C-terminal region NIY05_19440 PF00440 Bacterial regulatory proteins, tetR family NIY05_19445 PF01048 Phosphorylase superfamily NIY05_19455 PF01687 Riboflavin kinase NIY05_19455 PF06574 FAD synthetase NIY05_19460 PF00133 tRNA synthetases class I (I, L, M and V) NIY05_19460 PF08264 Anticodon-binding domain of tRNA NIY05_19460 PF06827 Zinc finger found in FPG and IleRS NIY05_19465 PF01252 Signal peptidase (SPase) II NIY05_19470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY05_19510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIY05_19515 PF07859 alpha/beta hydrolase fold NIY05_19535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY05_19535 PF03466 LysR substrate binding domain NIY05_19540 PF01025 GrpE NIY05_19545 PF00012 Hsp70 protein NIY05_19565 PF13406 Transglycosylase SLT domain NIY05_19570 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NIY05_19570 PF02222 ATP-grasp domain NIY05_19575 PF00731 AIR carboxylase NIY05_19585 PF01225 Mur ligase family, catalytic domain NIY05_19585 PF02875 Mur ligase family, glutamate ligase domain NIY05_19585 PF08245 Mur ligase middle domain NIY05_19595 PF01569 PAP2 superfamily NIY05_19600 PF03741 Integral membrane protein TerC family NIY05_19610 PF03738 Glutathionylspermidine synthase preATP-grasp NIY05_19615 PF00355 Rieske [2Fe-2S] domain NIY05_19620 PF01979 Amidohydrolase family NIY05_19625 PF00156 Phosphoribosyl transferase domain NIY05_19635 PF13098 Thioredoxin-like domain NIY05_19635 PF10411 Disulfide bond isomerase protein N-terminus NIY05_19640 PF01545 Cation efflux family NIY05_19640 PF16916 Dimerisation domain of Zinc Transporter NIY05_19645 PF02583 Metal-sensitive transcriptional repressor NIY05_19650 PF01926 50S ribosome-binding GTPase NIY05_19650 PF12631 MnmE helical domain NIY05_19650 PF10396 GTP-binding protein TrmE N-terminus NIY05_19655 PF02096 60Kd inner membrane protein NIY05_19655 PF14849 YidC periplasmic domain NIY05_19660 PF01809 Putative membrane protein insertion efficiency factor NIY05_19665 PF00825 Ribonuclease P NIY05_19670 PF00468 Ribosomal protein L34