locus-tag class description NIY06_00005 PF00308 Bacterial dnaA protein NIY06_00005 PF08299 Bacterial dnaA protein helix-turn-helix NIY06_00005 PF11638 DnaA N-terminal domain NIY06_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NIY06_00010 PF02767 DNA polymerase III beta subunit, central domain NIY06_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NIY06_00015 PF02463 RecF/RecN/SMC N terminal domain NIY06_00020 PF00204 DNA gyrase B NIY06_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NIY06_00020 PF18053 DNA gyrase B subunit insert domain NIY06_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_00020 PF01751 Toprim domain NIY06_00030 PF09335 SNARE associated Golgi protein NIY06_00035 PF00005 ABC transporter NIY06_00035 PF12848 ABC transporter NIY06_00055 PF01521 Iron-sulphur cluster biosynthesis NIY06_00060 PF00561 alpha/beta hydrolase fold NIY06_00065 PF03702 Anhydro-N-acetylmuramic acid kinase NIY06_00070 PF00579 tRNA synthetases class I (W and Y) NIY06_00110 PF00209 Sodium:neurotransmitter symporter family NIY06_00120 PF01189 16S rRNA methyltransferase RsmB/F NIY06_00120 PF01029 NusB family NIY06_00125 PF02911 Formyl transferase, C-terminal domain NIY06_00125 PF00551 Formyl transferase NIY06_00130 PF00920 Dehydratase family NIY06_00145 PF03466 LysR substrate binding domain NIY06_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_00150 PF00860 Permease family NIY06_00155 PF00311 Phosphoenolpyruvate carboxylase NIY06_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region NIY06_00160 PF00440 Bacterial regulatory proteins, tetR family NIY06_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_00170 PF00873 AcrB/AcrD/AcrF family NIY06_00180 PF00226 DnaJ domain NIY06_00180 PF00684 DnaJ central domain NIY06_00180 PF01556 DnaJ C terminal domain NIY06_00190 PF01113 Dihydrodipicolinate reductase, N-terminus NIY06_00190 PF05173 Dihydrodipicolinate reductase, C-terminus NIY06_00200 PF07690 Major Facilitator Superfamily NIY06_00205 PF00248 Aldo/keto reductase family NIY06_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_00210 PF03466 LysR substrate binding domain NIY06_00225 PF00392 Bacterial regulatory proteins, gntR family NIY06_00225 PF00155 Aminotransferase class I and II NIY06_00230 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_00230 PF00107 Zinc-binding dehydrogenase NIY06_00235 PF03352 Methyladenine glycosylase NIY06_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein NIY06_00250 PF14815 NUDIX domain NIY06_00250 PF10576 Iron-sulfur binding domain of endonuclease III NIY06_00250 PF00633 Helix-hairpin-helix motif NIY06_00265 PF07043 Protein of unknown function (DUF1328) NIY06_00270 PF03692 Putative zinc- or iron-chelating domain NIY06_00275 PF07995 Glucose / Sorbosone dehydrogenase NIY06_00280 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_00280 PF16193 AAA C-terminal domain NIY06_00280 PF12002 MgsA AAA+ ATPase C terminal NIY06_00285 PF01226 Formate/nitrite transporter NIY06_00295 PF01259 SAICAR synthetase NIY06_00305 PF00701 Dihydrodipicolinate synthetase family NIY06_00310 PF00857 Isochorismatase family NIY06_00315 PF01758 Sodium Bile acid symporter family NIY06_00320 PF01554 MatE NIY06_00325 PF04463 Protein of unknown function (DUF523) NIY06_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY06_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY06_00345 PF02798 Glutathione S-transferase, N-terminal domain NIY06_00345 PF14497 Glutathione S-transferase, C-terminal domain NIY06_00355 PF00324 Amino acid permease NIY06_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIY06_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY06_00375 PF00392 Bacterial regulatory proteins, gntR family NIY06_00375 PF07702 UTRA domain NIY06_00380 PF05962 HutD NIY06_00385 PF17392 Urocanase C-terminal domain NIY06_00385 PF01175 Urocanase Rossmann-like domain NIY06_00385 PF17391 Urocanase N-terminal domain NIY06_00390 PF00221 Aromatic amino acid lyase NIY06_00395 PF00324 Amino acid permease NIY06_00400 PF01979 Amidohydrolase family NIY06_00405 PF00491 Arginase family NIY06_00420 PF01177 Asp/Glu/Hydantoin racemase NIY06_00425 PF01380 SIS domain NIY06_00430 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_00430 PF14602 Hexapeptide repeat of succinyl-transferase NIY06_00430 PF12804 MobA-like NTP transferase domain NIY06_00435 PF04608 Phosphatidylglycerophosphatase A NIY06_00440 PF02769 AIR synthase related protein, C-terminal domain NIY06_00440 PF00586 AIR synthase related protein, N-terminal domain NIY06_00445 PF01029 NusB family NIY06_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase NIY06_00455 PF00925 GTP cyclohydrolase II NIY06_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIY06_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase NIY06_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIY06_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NIY06_00490 PF00581 Rhodanese-like domain NIY06_00495 PF02666 Phosphatidylserine decarboxylase NIY06_00500 PF03069 Acetamidase/Formamidase family NIY06_00520 PF00512 His Kinase A (phospho-acceptor) domain NIY06_00520 PF11808 Phosphate regulon sensor protein PhoR NIY06_00520 PF00989 PAS fold NIY06_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_00525 PF00072 Response regulator receiver domain NIY06_00525 PF00486 Transcriptional regulatory protein, C terminal NIY06_00535 PF00106 short chain dehydrogenase NIY06_00540 PF01554 MatE NIY06_00545 PF00155 Aminotransferase class I and II NIY06_00550 PF04286 Protein of unknown function (DUF445) NIY06_00565 PF04262 Glutamate-cysteine ligase NIY06_00570 PF02600 Disulfide bond formation protein DsbB NIY06_00575 PF04717 Type VI secretion system, phage-baseplate injector NIY06_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY06_00575 PF13296 Putative type VI secretion system Rhs element Vgr NIY06_00580 PF00877 NlpC/P60 family NIY06_00580 PF01476 LysM domain NIY06_00595 PF05728 Uncharacterised protein family (UPF0227) NIY06_00600 PF01751 Toprim domain NIY06_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_00600 PF00986 DNA gyrase B subunit, carboxyl terminus NIY06_00600 PF00204 DNA gyrase B NIY06_00605 PF00106 short chain dehydrogenase NIY06_00610 PF04115 Ureidoglycolate lyase NIY06_00615 PF03561 Allantoicase repeat NIY06_00620 PF01494 FAD binding domain NIY06_00630 PF00860 Permease family NIY06_00635 PF00576 HIUase/Transthyretin family NIY06_00665 PF11412 Disulphide bond corrector protein DsbC NIY06_00665 PF02683 Cytochrome C biogenesis protein transmembrane region NIY06_00670 PF00990 Diguanylate cyclase, GGDEF domain NIY06_00670 PF07694 5TMR of 5TMR-LYT NIY06_00675 PF07859 alpha/beta hydrolase fold NIY06_00685 PF03960 ArsC family NIY06_00690 PF03372 Endonuclease/Exonuclease/phosphatase family NIY06_00695 PF00156 Phosphoribosyl transferase domain NIY06_00700 PF00593 TonB dependent receptor NIY06_00700 PF07715 TonB-dependent Receptor Plug Domain NIY06_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NIY06_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NIY06_00715 PF03033 Glycosyltransferase family 28 N-terminal domain NIY06_00715 PF04101 Glycosyltransferase family 28 C-terminal domain NIY06_00720 PF08245 Mur ligase middle domain NIY06_00720 PF02875 Mur ligase family, glutamate ligase domain NIY06_00720 PF01225 Mur ligase family, catalytic domain NIY06_00725 PF07478 D-ala D-ala ligase C-terminus NIY06_00725 PF01820 D-ala D-ala ligase N-terminus NIY06_00730 PF08478 POTRA domain, FtsQ-type NIY06_00730 PF03799 Cell division protein FtsQ NIY06_00735 PF02491 SHS2 domain inserted in FTSA NIY06_00740 PF00091 Tubulin/FtsZ family, GTPase domain NIY06_00740 PF12327 FtsZ family, C-terminal domain NIY06_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NIY06_00755 PF01551 Peptidase family M23 NIY06_00760 PF00456 Transketolase, thiamine diphosphate binding domain NIY06_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain NIY06_00765 PF02817 e3 binding domain NIY06_00765 PF00364 Biotin-requiring enzyme NIY06_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY06_00775 PF01169 Uncharacterized protein family UPF0016 NIY06_00780 PF00593 TonB dependent receptor NIY06_00780 PF07715 TonB-dependent Receptor Plug Domain NIY06_00785 PF00258 Flavodoxin NIY06_00785 PF01613 Flavin reductase like domain NIY06_00790 PF03692 Putative zinc- or iron-chelating domain NIY06_00795 PF00478 IMP dehydrogenase / GMP reductase domain NIY06_00795 PF00571 CBS domain NIY06_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY06_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY06_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY06_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY06_00805 PF01243 Pyridoxamine 5'-phosphate oxidase NIY06_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NIY06_00810 PF17768 RecJ OB domain NIY06_00810 PF02272 DHHA1 domain NIY06_00810 PF01368 DHH family NIY06_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY06_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NIY06_00840 PF04452 RNA methyltransferase NIY06_00845 PF00924 Mechanosensitive ion channel NIY06_00855 PF13193 AMP-binding enzyme C-terminal domain NIY06_00855 PF00501 AMP-binding enzyme NIY06_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus NIY06_00860 PF00857 Isochorismatase family NIY06_00865 PF01037 Lrp/AsnC ligand binding domain NIY06_00870 PF00872 Transposase, Mutator family NIY06_00875 PF00296 Luciferase-like monooxygenase NIY06_00880 PF03358 NADPH-dependent FMN reductase NIY06_00890 PF00072 Response regulator receiver domain NIY06_00890 PF00196 Bacterial regulatory proteins, luxR family NIY06_00900 PF00672 HAMP domain NIY06_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_00900 PF00512 His Kinase A (phospho-acceptor) domain NIY06_00900 PF01627 Hpt domain NIY06_00900 PF00072 Response regulator receiver domain NIY06_00905 PF04341 Protein of unknown function, DUF485 NIY06_00910 PF00474 Sodium:solute symporter family NIY06_00920 PF02028 BCCT, betaine/carnitine/choline family transporter NIY06_00930 PF00990 Diguanylate cyclase, GGDEF domain NIY06_00940 PF00005 ABC transporter NIY06_00940 PF17760 UvrA interaction domain NIY06_00940 PF17755 UvrA DNA-binding domain NIY06_00945 PF16925 Tetracyclin repressor-like, C-terminal domain NIY06_00945 PF00440 Bacterial regulatory proteins, tetR family NIY06_00950 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_00950 PF00107 Zinc-binding dehydrogenase NIY06_00960 PF06942 GlpM protein NIY06_00965 PF08543 Phosphomethylpyrimidine kinase NIY06_00965 PF03070 TENA/THI-4/PQQC family NIY06_00965 PF02581 Thiamine monophosphate synthase NIY06_00975 PF07690 Major Facilitator Superfamily NIY06_00980 PF00436 Single-strand binding protein family NIY06_00990 PF03591 AzlC protein NIY06_01000 PF00324 Amino acid permease NIY06_01005 PF00392 Bacterial regulatory proteins, gntR family NIY06_01005 PF00155 Aminotransferase class I and II NIY06_01010 PF00202 Aminotransferase class-III NIY06_01015 PF00171 Aldehyde dehydrogenase family NIY06_01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_01025 PF00857 Isochorismatase family NIY06_01030 PF02678 Pirin NIY06_01030 PF05726 Pirin C-terminal cupin domain NIY06_01035 PF01593 Flavin containing amine oxidoreductase NIY06_01055 PF07690 Major Facilitator Superfamily NIY06_01060 PF03466 LysR substrate binding domain NIY06_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_01080 PF00248 Aldo/keto reductase family NIY06_01085 PF12833 Helix-turn-helix domain NIY06_01085 PF02311 AraC-like ligand binding domain NIY06_01115 PF01638 HxlR-like helix-turn-helix NIY06_01120 PF02525 Flavodoxin-like fold NIY06_01140 PF02705 K+ potassium transporter NIY06_01165 PF00230 Major intrinsic protein NIY06_01180 PF00977 Histidine biosynthesis protein NIY06_01185 PF01636 Phosphotransferase enzyme family NIY06_01200 PF03992 Antibiotic biosynthesis monooxygenase NIY06_01215 PF00977 Histidine biosynthesis protein NIY06_01230 PF00117 Glutamine amidotransferase class-I NIY06_01235 PF00475 Imidazoleglycerol-phosphate dehydratase NIY06_01255 PF00583 Acetyltransferase (GNAT) family NIY06_01260 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NIY06_01260 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NIY06_01270 PF00512 His Kinase A (phospho-acceptor) domain NIY06_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_01270 PF00672 HAMP domain NIY06_01275 PF00072 Response regulator receiver domain NIY06_01275 PF00486 Transcriptional regulatory protein, C terminal NIY06_01280 PF00575 S1 RNA binding domain NIY06_01280 PF17674 HHH domain NIY06_01280 PF09371 Tex-like protein N-terminal domain NIY06_01280 PF16921 Tex protein YqgF-like domain NIY06_01285 PF00916 Sulfate permease family NIY06_01285 PF01740 STAS domain NIY06_01290 PF00106 short chain dehydrogenase NIY06_01295 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY06_01300 PF12848 ABC transporter NIY06_01300 PF00005 ABC transporter NIY06_01325 PF04191 Phospholipid methyltransferase NIY06_01345 PF00529 HlyD membrane-fusion protein of T1SS NIY06_01345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_01350 PF00873 AcrB/AcrD/AcrF family NIY06_01355 PF01545 Cation efflux family NIY06_01385 PF00324 Amino acid permease NIY06_01400 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY06_01415 PF01795 MraW methylase family NIY06_01425 PF03717 Penicillin-binding Protein dimerisation domain NIY06_01425 PF00905 Penicillin binding protein transpeptidase domain NIY06_01430 PF08245 Mur ligase middle domain NIY06_01430 PF01225 Mur ligase family, catalytic domain NIY06_01430 PF02875 Mur ligase family, glutamate ligase domain NIY06_01435 PF02875 Mur ligase family, glutamate ligase domain NIY06_01435 PF01225 Mur ligase family, catalytic domain NIY06_01435 PF08245 Mur ligase middle domain NIY06_01440 PF00953 Glycosyl transferase family 4 NIY06_01450 PF13847 Methyltransferase domain NIY06_01455 PF17092 Penicillin-binding protein OB-like domain NIY06_01455 PF00905 Penicillin binding protein transpeptidase domain NIY06_01455 PF00912 Transglycosylase NIY06_01460 PF11104 Type IV pilus assembly protein PilM; NIY06_01465 PF05137 Fimbrial assembly protein (PilN) NIY06_01470 PF04350 Pilus assembly protein, PilO NIY06_01480 PF11741 AMIN domain NIY06_01480 PF03958 Bacterial type II/III secretion system short domain NIY06_01480 PF07660 Secretin and TonB N terminus short domain NIY06_01480 PF00263 Bacterial type II and III secretion system protein NIY06_01485 PF01202 Shikimate kinase NIY06_01490 PF01761 3-dehydroquinate synthase NIY06_01500 PF04898 Glutamate synthase central domain NIY06_01500 PF00310 Glutamine amidotransferases class-II NIY06_01500 PF01493 GXGXG motif NIY06_01500 PF01645 Conserved region in glutamate synthase NIY06_01505 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NIY06_01505 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_01515 PF04011 LemA family NIY06_01520 PF04536 TPM domain NIY06_01530 PF07963 Prokaryotic N-terminal methylation motif NIY06_01530 PF00114 Pilin (bacterial filament) NIY06_01540 PF15864 Protein glycosylation ligase NIY06_01540 PF04932 O-Antigen ligase NIY06_01540 PF11846 Virulence factor membrane-bound polymerase, C-terminal NIY06_01550 PF00210 Ferritin-like domain NIY06_01555 PF04324 BFD-like [2Fe-2S] binding domain NIY06_01560 PF01042 Endoribonuclease L-PSP NIY06_01565 PF04607 Region found in RelA / SpoT proteins NIY06_01565 PF02824 TGS domain NIY06_01565 PF13291 ACT domain NIY06_01575 PF01192 RNA polymerase Rpb6 NIY06_01580 PF00625 Guanylate kinase NIY06_01585 PF02401 LytB protein NIY06_01625 PF00886 Ribosomal protein S16 NIY06_01630 PF01782 RimM N-terminal domain NIY06_01630 PF05239 PRC-barrel domain NIY06_01635 PF01746 tRNA (Guanine-1)-methyltransferase NIY06_01640 PF01245 Ribosomal protein L19 NIY06_01645 PF00561 alpha/beta hydrolase fold NIY06_01650 PF03280 Proteobacterial lipase chaperone protein NIY06_01655 PF09157 Pseudouridine synthase II TruB, C-terminal NIY06_01655 PF01509 TruB family pseudouridylate synthase (N terminal domain) NIY06_01655 PF16198 tRNA pseudouridylate synthase B C-terminal domain NIY06_01660 PF01925 Sulfite exporter TauE/SafE NIY06_01670 PF00892 EamA-like transporter family NIY06_01675 PF00892 EamA-like transporter family NIY06_01680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY06_01680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY06_01685 PF02913 FAD linked oxidases, C-terminal domain NIY06_01685 PF01565 FAD binding domain NIY06_01695 PF03992 Antibiotic biosynthesis monooxygenase NIY06_01700 PF02525 Flavodoxin-like fold NIY06_01710 PF07690 Major Facilitator Superfamily NIY06_01715 PF12805 FUSC-like inner membrane protein yccS NIY06_01720 PF00080 Copper/zinc superoxide dismutase (SODC) NIY06_01725 PF01594 AI-2E family transporter NIY06_01730 PF13614 AAA domain NIY06_01760 PF00324 Amino acid permease NIY06_01765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIY06_01765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIY06_01770 PF00202 Aminotransferase class-III NIY06_01775 PF04958 Arginine N-succinyltransferase beta subunit NIY06_01780 PF00171 Aldehyde dehydrogenase family NIY06_01785 PF04996 Succinylarginine dihydrolase NIY06_01790 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NIY06_01805 PF05922 Peptidase inhibitor I9 NIY06_01805 PF00082 Subtilase family NIY06_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_01820 PF03466 LysR substrate binding domain NIY06_01825 PF00892 EamA-like transporter family NIY06_01835 PF05746 DALR anticodon binding domain NIY06_01835 PF02092 Glycyl-tRNA synthetase beta subunit NIY06_01840 PF02091 Glycyl-tRNA synthetase alpha subunit NIY06_01865 PF00571 CBS domain NIY06_01870 PF04024 PspC domain NIY06_01880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_01880 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY06_01880 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_01880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_01890 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NIY06_01890 PF08501 Shikimate dehydrogenase substrate binding domain NIY06_01890 PF01488 Shikimate / quinate 5-dehydrogenase NIY06_01895 PF01218 Coproporphyrinogen III oxidase NIY06_01900 PF00925 GTP cyclohydrolase II NIY06_01905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NIY06_01905 PF02779 Transketolase, pyrimidine binding domain NIY06_01905 PF02780 Transketolase, C-terminal domain NIY06_01910 PF00459 Inositol monophosphatase family NIY06_01915 PF00271 Helicase conserved C-terminal domain NIY06_01915 PF03880 DbpA RNA binding domain NIY06_01915 PF00270 DEAD/DEAH box helicase NIY06_01915 PF12343 Cold shock protein DEAD box A NIY06_01925 PF00005 ABC transporter NIY06_01930 PF02405 Permease MlaE NIY06_01940 PF05494 MlaC protein NIY06_01950 PF01544 CorA-like Mg2+ transporter protein NIY06_01955 PF03641 Possible lysine decarboxylase NIY06_01960 PF00293 NUDIX domain NIY06_01965 PF00156 Phosphoribosyl transferase domain NIY06_01970 PF17191 RecG wedge domain NIY06_01970 PF00271 Helicase conserved C-terminal domain NIY06_01970 PF00270 DEAD/DEAH box helicase NIY06_01985 PF01553 Acyltransferase NIY06_01995 PF00375 Sodium:dicarboxylate symporter family NIY06_02005 PF01926 50S ribosome-binding GTPase NIY06_02010 PF02082 Transcriptional regulator NIY06_02015 PF00042 Globin NIY06_02015 PF00970 Oxidoreductase FAD-binding domain NIY06_02015 PF00175 Oxidoreductase NAD-binding domain NIY06_02020 PF05872 Bacterial protein of unknown function (DUF853) NIY06_02025 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY06_02030 PF00117 Glutamine amidotransferase class-I NIY06_02035 PF00338 Ribosomal protein S10p/S20e NIY06_02040 PF00297 Ribosomal protein L3 NIY06_02045 PF00573 Ribosomal protein L4/L1 family NIY06_02050 PF00276 Ribosomal protein L23 NIY06_02055 PF00181 Ribosomal Proteins L2, RNA binding domain NIY06_02055 PF03947 Ribosomal Proteins L2, C-terminal domain NIY06_02060 PF00203 Ribosomal protein S19 NIY06_02065 PF00237 Ribosomal protein L22p/L17e NIY06_02075 PF00252 Ribosomal protein L16p/L10e NIY06_02080 PF00831 Ribosomal L29 protein NIY06_02085 PF00366 Ribosomal protein S17 NIY06_02090 PF00238 Ribosomal protein L14p/L23e NIY06_02095 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NIY06_02095 PF00467 KOW motif NIY06_02100 PF00281 Ribosomal protein L5 NIY06_02100 PF00673 ribosomal L5P family C-terminus NIY06_02105 PF00253 Ribosomal protein S14p/S29e NIY06_02110 PF00410 Ribosomal protein S8 NIY06_02115 PF00347 Ribosomal protein L6 NIY06_02120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NIY06_02125 PF03719 Ribosomal protein S5, C-terminal domain NIY06_02125 PF00333 Ribosomal protein S5, N-terminal domain NIY06_02130 PF00327 Ribosomal protein L30p/L7e NIY06_02135 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NIY06_02140 PF00344 SecY translocase NIY06_02145 PF00444 Ribosomal protein L36 NIY06_02150 PF00416 Ribosomal protein S13/S18 NIY06_02155 PF00411 Ribosomal protein S11 NIY06_02160 PF00163 Ribosomal protein S4/S9 N-terminal domain NIY06_02160 PF01479 S4 domain NIY06_02165 PF01000 RNA polymerase Rpb3/RpoA insert domain NIY06_02165 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NIY06_02165 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NIY06_02170 PF01196 Ribosomal protein L17 NIY06_02175 PF00743 Flavin-binding monooxygenase-like NIY06_02180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_02180 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_02180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_02185 PF03937 Flavinator of succinate dehydrogenase NIY06_02215 PF09526 Probable metal-binding protein (DUF2387) NIY06_02220 PF01432 Peptidase family M3 NIY06_02225 PF08461 Ribonuclease R winged-helix domain NIY06_02225 PF17876 Cold shock domain NIY06_02225 PF08206 Ribonuclease B OB domain NIY06_02225 PF00773 RNB domain NIY06_02225 PF00575 S1 RNA binding domain NIY06_02270 PF01557 Fumarylacetoacetate (FAA) hydrolase family NIY06_02275 PF12833 Helix-turn-helix domain NIY06_02280 PF00892 EamA-like transporter family NIY06_02285 PF03631 Virulence factor BrkB NIY06_02290 PF03358 NADPH-dependent FMN reductase NIY06_02315 PF02130 Uncharacterized protein family UPF0054 NIY06_02320 PF02562 PhoH-like protein NIY06_02325 PF04055 Radical SAM superfamily NIY06_02325 PF01938 TRAM domain NIY06_02325 PF00919 Uncharacterized protein family UPF0004 NIY06_02330 PF01551 Peptidase family M23 NIY06_02330 PF10145 Phage-related minor tail protein NIY06_02330 PF01464 Transglycosylase SLT domain NIY06_02340 PF00056 lactate/malate dehydrogenase, NAD binding domain NIY06_02340 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIY06_02360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NIY06_02365 PF01066 CDP-alcohol phosphatidyltransferase NIY06_02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_02410 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_02415 PF17932 Tetracyclin repressor-like, C-terminal domain NIY06_02415 PF00440 Bacterial regulatory proteins, tetR family NIY06_02430 PF01039 Carboxyl transferase domain NIY06_02435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_02435 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_02435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_02445 PF00364 Biotin-requiring enzyme NIY06_02445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY06_02445 PF00289 Biotin carboxylase, N-terminal domain NIY06_02445 PF02785 Biotin carboxylase C-terminal domain NIY06_02455 PF04386 Stringent starvation protein B NIY06_02460 PF00043 Glutathione S-transferase, C-terminal domain NIY06_02460 PF13417 Glutathione S-transferase, N-terminal domain NIY06_02465 PF00380 Ribosomal protein S9/S16 NIY06_02470 PF00572 Ribosomal protein L13 NIY06_02475 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NIY06_02480 PF00398 Ribosomal RNA adenine dimethylase NIY06_02485 PF00149 Calcineurin-like phosphoesterase NIY06_02505 PF13167 GTP-binding GTPase N-terminal NIY06_02505 PF01926 50S ribosome-binding GTPase NIY06_02505 PF16360 GTP-binding GTPase Middle Region NIY06_02515 PF13091 PLD-like domain NIY06_02520 PF00149 Calcineurin-like phosphoesterase NIY06_02520 PF10518 TAT (twin-arginine translocation) pathway signal sequence NIY06_02525 PF00691 OmpA family NIY06_02525 PF01389 OmpA-like transmembrane domain NIY06_02530 PF00990 Diguanylate cyclase, GGDEF domain NIY06_02530 PF17152 Periplasmic sensor domain NIY06_02565 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_02565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY06_02575 PF00753 Metallo-beta-lactamase superfamily NIY06_02575 PF04273 Putative phosphatase (DUF442) NIY06_02580 PF00561 alpha/beta hydrolase fold NIY06_02585 PF00085 Thioredoxin NIY06_02590 PF03061 Thioesterase superfamily NIY06_02600 PF04461 Protein of unknown function (DUF520) NIY06_02610 PF01266 FAD dependent oxidoreductase NIY06_02610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIY06_02620 PF03795 YCII-related domain NIY06_02625 PF04279 Intracellular septation protein A NIY06_02630 PF02811 PHP domain NIY06_02635 PF01062 Bestrophin, RFP-TM, chloride channel NIY06_02640 PF04002 RadC-like JAB domain NIY06_02645 PF04127 DNA / pantothenate metabolism flavoprotein NIY06_02645 PF02441 Flavoprotein NIY06_02650 PF07549 SecD/SecF GG Motif NIY06_02650 PF02355 Protein export membrane protein NIY06_02655 PF02355 Protein export membrane protein NIY06_02655 PF13721 SecD export protein N-terminal TM region NIY06_02655 PF07549 SecD/SecF GG Motif NIY06_02660 PF02699 Preprotein translocase subunit NIY06_02665 PF01702 Queuine tRNA-ribosyltransferase NIY06_02680 PF02547 Queuosine biosynthesis protein NIY06_02690 PF07689 KaiB domain NIY06_02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_02690 PF00512 His Kinase A (phospho-acceptor) domain NIY06_02695 PF03710 Glutamate-ammonia ligase adenylyltransferase NIY06_02695 PF08335 GlnD PII-uridylyltransferase NIY06_02700 PF01063 Amino-transferase class IV NIY06_02715 PF01522 Polysaccharide deacetylase NIY06_02720 PF00535 Glycosyl transferase family 2 NIY06_02725 PF13439 Glycosyltransferase Family 4 NIY06_02725 PF00534 Glycosyl transferases group 1 NIY06_02750 PF17101 Stealth protein CR1, conserved region 1 NIY06_02750 PF17102 Stealth protein CR3, conserved region 3 NIY06_02750 PF11380 Stealth protein CR2, conserved region 2 NIY06_02755 PF02938 GAD domain NIY06_02755 PF01336 OB-fold nucleic acid binding domain NIY06_02755 PF00152 tRNA synthetases class II (D, K and N) NIY06_02765 PF07715 TonB-dependent Receptor Plug Domain NIY06_02765 PF00593 TonB dependent receptor NIY06_02785 PF06146 Phosphate-starvation-inducible E NIY06_02790 PF00043 Glutathione S-transferase, C-terminal domain NIY06_02790 PF02798 Glutathione S-transferase, N-terminal domain NIY06_02795 PF03466 LysR substrate binding domain NIY06_02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_02800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_02800 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY06_02800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_02800 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_02805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_02805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_02805 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_02805 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY06_02815 PF00512 His Kinase A (phospho-acceptor) domain NIY06_02815 PF00672 HAMP domain NIY06_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_02820 PF00072 Response regulator receiver domain NIY06_02820 PF00486 Transcriptional regulatory protein, C terminal NIY06_02825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NIY06_02845 PF01923 Cobalamin adenosyltransferase NIY06_02850 PF07715 TonB-dependent Receptor Plug Domain NIY06_02850 PF00593 TonB dependent receptor NIY06_02855 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NIY06_02860 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_02885 PF00290 Tryptophan synthase alpha chain NIY06_02890 PF01039 Carboxyl transferase domain NIY06_02895 PF02875 Mur ligase family, glutamate ligase domain NIY06_02895 PF08245 Mur ligase middle domain NIY06_02910 PF00753 Metallo-beta-lactamase superfamily NIY06_02915 PF00578 AhpC/TSA family NIY06_02915 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIY06_02920 PF02810 SEC-C motif NIY06_02920 PF07517 SecA DEAD-like domain NIY06_02920 PF01043 SecA preprotein cross-linking domain NIY06_02920 PF07516 SecA Wing and Scaffold domain NIY06_02930 PF00083 Sugar (and other) transporter NIY06_02930 PF07690 Major Facilitator Superfamily NIY06_02935 PF03006 Haemolysin-III related NIY06_02960 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY06_02960 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY06_02960 PF00378 Enoyl-CoA hydratase/isomerase NIY06_02965 PF00108 Thiolase, N-terminal domain NIY06_02965 PF02803 Thiolase, C-terminal domain NIY06_02970 PF02311 AraC-like ligand binding domain NIY06_02970 PF12833 Helix-turn-helix domain NIY06_02975 PF02515 CoA-transferase family III NIY06_02980 PF04966 Carbohydrate-selective porin, OprB family NIY06_02985 PF01011 PQQ enzyme repeat NIY06_02990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY06_02990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY06_03000 PF00893 Small Multidrug Resistance protein NIY06_03010 PF02803 Thiolase, C-terminal domain NIY06_03010 PF00108 Thiolase, N-terminal domain NIY06_03020 PF13505 Outer membrane protein beta-barrel domain NIY06_03020 PF00691 OmpA family NIY06_03030 PF01139 tRNA-splicing ligase RtcB NIY06_03035 PF00324 Amino acid permease NIY06_03040 PF05175 Methyltransferase small domain NIY06_03040 PF08468 Methyltransferase small domain N-terminal NIY06_03045 PF00860 Permease family NIY06_03050 PF00009 Elongation factor Tu GTP binding domain NIY06_03050 PF03144 Elongation factor Tu domain 2 NIY06_03050 PF00679 Elongation factor G C-terminus NIY06_03055 PF01741 Large-conductance mechanosensitive channel, MscL NIY06_03070 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NIY06_03070 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NIY06_03070 PF06827 Zinc finger found in FPG and IleRS NIY06_03075 PF02245 Methylpurine-DNA glycosylase (MPG) NIY06_03095 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY06_03110 PF13098 Thioredoxin-like domain NIY06_03110 PF10411 Disulfide bond isomerase protein N-terminus NIY06_03115 PF01571 Aminomethyltransferase folate-binding domain NIY06_03125 PF04343 Protein of unknown function, DUF488 NIY06_03130 PF03831 PhnA domain NIY06_03130 PF08274 PhnA Zinc-Ribbon NIY06_03135 PF07411 Domain of unknown function (DUF1508) NIY06_03140 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY06_03140 PF04073 Aminoacyl-tRNA editing domain NIY06_03140 PF03129 Anticodon binding domain NIY06_03145 PF00873 AcrB/AcrD/AcrF family NIY06_03160 PF00072 Response regulator receiver domain NIY06_03165 PF00072 Response regulator receiver domain NIY06_03170 PF01584 CheW-like domain NIY06_03175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NIY06_03175 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NIY06_03180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_03180 PF01584 CheW-like domain NIY06_03180 PF01627 Hpt domain NIY06_03180 PF00072 Response regulator receiver domain NIY06_03190 PF01546 Peptidase family M20/M25/M40 NIY06_03190 PF07687 Peptidase dimerisation domain NIY06_03195 PF08085 Entericidin EcnA/B family NIY06_03205 PF04304 Protein of unknown function (DUF454) NIY06_03210 PF03734 L,D-transpeptidase catalytic domain NIY06_03210 PF17969 L,D-transpeptidase C-terminal domain NIY06_03250 PF00258 Flavodoxin NIY06_03250 PF00175 Oxidoreductase NAD-binding domain NIY06_03250 PF00667 FAD binding domain NIY06_03260 PF12805 FUSC-like inner membrane protein yccS NIY06_03265 PF07690 Major Facilitator Superfamily NIY06_03270 PF00881 Nitroreductase family NIY06_03285 PF01235 Sodium:alanine symporter family NIY06_03290 PF01734 Patatin-like phospholipase NIY06_03295 PF13291 ACT domain NIY06_03295 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_03300 PF05992 SbmA/BacA-like family NIY06_03330 PF02934 GatB/GatE catalytic domain NIY06_03330 PF02637 GatB domain NIY06_03335 PF01425 Amidase NIY06_03340 PF02686 Glu-tRNAGln amidotransferase C subunit NIY06_03350 PF04085 rod shape-determining protein MreC NIY06_03355 PF04093 rod shape-determining protein MreD NIY06_03360 PF02545 Maf-like protein NIY06_03365 PF00575 S1 RNA binding domain NIY06_03365 PF10150 Ribonuclease E/G family NIY06_03375 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NIY06_03375 PF06974 Protein of unknown function (DUF1298) NIY06_03380 PF01507 Phosphoadenosine phosphosulfate reductase family NIY06_03395 PF02525 Flavodoxin-like fold NIY06_03415 PF02673 Bacitracin resistance protein BacA NIY06_03420 PF06719 AraC-type transcriptional regulator N-terminus NIY06_03420 PF12833 Helix-turn-helix domain NIY06_03425 PF14765 Polyketide synthase dehydratase NIY06_03425 PF00550 Phosphopantetheine attachment site NIY06_03425 PF08659 KR domain NIY06_03425 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_03425 PF16197 Ketoacyl-synthetase C-terminal extension NIY06_03425 PF09277 Erythronolide synthase, docking NIY06_03425 PF08990 Erythronolide synthase docking NIY06_03425 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_03425 PF00698 Acyl transferase domain NIY06_03425 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_03430 PF01965 DJ-1/PfpI family NIY06_03440 PF00324 Amino acid permease NIY06_03445 PF04303 PrpF protein NIY06_03450 PF00348 Polyprenyl synthetase NIY06_03455 PF04237 YjbR NIY06_03460 PF01145 SPFH domain / Band 7 family NIY06_03470 PF01734 Patatin-like phospholipase NIY06_03490 PF08019 Phosphoethanolamine transferase EptA/EptB NIY06_03490 PF00884 Sulfatase NIY06_03495 PF00486 Transcriptional regulatory protein, C terminal NIY06_03495 PF00072 Response regulator receiver domain NIY06_03500 PF00512 His Kinase A (phospho-acceptor) domain NIY06_03500 PF08521 Two-component sensor kinase N-terminal NIY06_03500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_03510 PF00909 Ammonium Transporter Family NIY06_03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_03515 PF03466 LysR substrate binding domain NIY06_03535 PF08264 Anticodon-binding domain of tRNA NIY06_03535 PF00133 tRNA synthetases class I (I, L, M and V) NIY06_03535 PF10458 Valyl tRNA synthetase tRNA binding arm NIY06_03555 PF01906 Putative heavy-metal-binding NIY06_03560 PF01906 Putative heavy-metal-binding NIY06_03565 PF02321 Outer membrane efflux protein NIY06_03570 PF00873 AcrB/AcrD/AcrF family NIY06_03575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_03575 PF00529 HlyD membrane-fusion protein of T1SS NIY06_03580 PF01569 PAP2 superfamily NIY06_03590 PF00348 Polyprenyl synthetase NIY06_03600 PF00829 Ribosomal prokaryotic L21 protein NIY06_03605 PF01016 Ribosomal L27 protein NIY06_03610 PF03548 Outer membrane lipoprotein carrier protein LolA NIY06_03620 PF02403 Seryl-tRNA synthetase N-terminal domain NIY06_03620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY06_03625 PF10414 Sirohaem synthase dimerisation region NIY06_03625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIY06_03625 PF14824 Sirohaem biosynthesis protein central NIY06_03630 PF00588 SpoU rRNA Methylase family NIY06_03635 PF01638 HxlR-like helix-turn-helix NIY06_03640 PF03358 NADPH-dependent FMN reductase NIY06_03645 PF13520 Amino acid permease NIY06_03650 PF00465 Iron-containing alcohol dehydrogenase NIY06_03660 PF03099 Biotin/lipoate A/B protein ligase family NIY06_03665 PF04359 Protein of unknown function (DUF493) NIY06_03670 PF04546 Sigma-70, non-essential region NIY06_03670 PF00140 Sigma-70 factor, region 1.2 NIY06_03670 PF04542 Sigma-70 region 2 NIY06_03670 PF04539 Sigma-70 region 3 NIY06_03670 PF04545 Sigma-70, region 4 NIY06_03670 PF03979 Sigma-70 factor, region 1.1 NIY06_03690 PF00581 Rhodanese-like domain NIY06_03690 PF17773 UPF0176 acylphosphatase like domain NIY06_03700 PF00285 Citrate synthase, C-terminal domain NIY06_03705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIY06_03710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NIY06_03715 PF00890 FAD binding domain NIY06_03715 PF02910 Fumarate reductase flavoprotein C-term NIY06_03720 PF13085 2Fe-2S iron-sulfur cluster binding domain NIY06_03735 PF16870 2-oxoglutarate dehydrogenase C-terminal NIY06_03735 PF16078 2-oxoglutarate dehydrogenase N-terminus NIY06_03735 PF00676 Dehydrogenase E1 component NIY06_03735 PF02779 Transketolase, pyrimidine binding domain NIY06_03740 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY06_03740 PF00364 Biotin-requiring enzyme NIY06_03740 PF02817 e3 binding domain NIY06_03745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY06_03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_03750 PF08442 ATP-grasp domain NIY06_03750 PF00549 CoA-ligase NIY06_03755 PF02629 CoA binding domain NIY06_03755 PF00549 CoA-ligase NIY06_03760 PF00579 tRNA synthetases class I (W and Y) NIY06_03765 PF05661 Protein of unknown function (DUF808) NIY06_03770 PF04228 Putative neutral zinc metallopeptidase NIY06_03775 PF00999 Sodium/hydrogen exchanger family NIY06_03790 PF09587 Bacterial capsule synthesis protein PGA_cap NIY06_03800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY06_03805 PF00582 Universal stress protein family NIY06_03810 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_03815 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY06_03815 PF03449 Transcription elongation factor, N-terminal NIY06_03820 PF02142 MGS-like domain NIY06_03820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY06_03820 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NIY06_03825 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NIY06_03825 PF00117 Glutamine amidotransferase class-I NIY06_03840 PF01985 CRS1 / YhbY (CRM) domain NIY06_03845 PF01728 FtsJ-like methyltransferase NIY06_03850 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_03850 PF17862 AAA+ lid domain NIY06_03850 PF06480 FtsH Extracellular NIY06_03850 PF01434 Peptidase family M41 NIY06_03855 PF00809 Pterin binding enzyme NIY06_03875 PF09423 PhoD-like phosphatase NIY06_03875 PF16655 PhoD-like phosphatase, N-terminal domain NIY06_03890 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NIY06_03890 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NIY06_03905 PF00083 Sugar (and other) transporter NIY06_03910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NIY06_03910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NIY06_03915 PF01266 FAD dependent oxidoreductase NIY06_03915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NIY06_03920 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NIY06_03920 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NIY06_03925 PF00781 Diacylglycerol kinase catalytic domain NIY06_03930 PF00149 Calcineurin-like phosphoesterase NIY06_03940 PF00166 Chaperonin 10 Kd subunit NIY06_03945 PF00118 TCP-1/cpn60 chaperonin family NIY06_03950 PF01219 Prokaryotic diacylglycerol kinase NIY06_03960 PF03009 Glycerophosphoryl diester phosphodiesterase family NIY06_03965 PF00873 AcrB/AcrD/AcrF family NIY06_03975 PF01435 Peptidase family M48 NIY06_03980 PF01464 Transglycosylase SLT domain NIY06_03985 PF01171 PP-loop family NIY06_03995 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY06_03995 PF01464 Transglycosylase SLT domain NIY06_04000 PF01272 Transcription elongation factor, GreA/GreB, C-term NIY06_04000 PF03449 Transcription elongation factor, N-terminal NIY06_04015 PF00550 Phosphopantetheine attachment site NIY06_04015 PF00668 Condensation domain NIY06_04015 PF00975 Thioesterase domain NIY06_04015 PF00501 AMP-binding enzyme NIY06_04015 PF13193 AMP-binding enzyme C-terminal domain NIY06_04045 PF00881 Nitroreductase family NIY06_04060 PF02595 Glycerate kinase family NIY06_04065 PF00384 Molybdopterin oxidoreductase NIY06_04070 PF02634 FdhD/NarQ family NIY06_04075 PF06803 Protein of unknown function (DUF1232) NIY06_04080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY06_04080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY06_04080 PF11890 Domain of unknown function (DUF3410) NIY06_04085 PF00152 tRNA synthetases class II (D, K and N) NIY06_04095 PF18073 Rubredoxin metal binding domain NIY06_04100 PF00324 Amino acid permease NIY06_04110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NIY06_04110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NIY06_04115 PF01678 Diaminopimelate epimerase NIY06_04120 PF01810 LysE type translocator NIY06_04125 PF02899 Phage integrase, N-terminal SAM-like domain NIY06_04125 PF00589 Phage integrase family NIY06_04130 PF01012 Electron transfer flavoprotein domain NIY06_04135 PF01012 Electron transfer flavoprotein domain NIY06_04135 PF00766 Electron transfer flavoprotein FAD-binding domain NIY06_04140 PF00521 DNA gyrase/topoisomerase IV, subunit A NIY06_04140 PF03989 DNA gyrase C-terminal domain, beta-propeller NIY06_04155 PF00535 Glycosyl transferase family 2 NIY06_04175 PF13533 Biotin-lipoyl like NIY06_04185 PF00266 Aminotransferase class-V NIY06_04200 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NIY06_04210 PF02687 FtsX-like permease family NIY06_04210 PF12704 MacB-like periplasmic core domain NIY06_04215 PF00005 ABC transporter NIY06_04220 PF03772 Competence protein NIY06_04220 PF13567 Domain of unknown function (DUF4131) NIY06_04220 PF00753 Metallo-beta-lactamase superfamily NIY06_04230 PF06965 Na+/H+ antiporter 1 NIY06_04230 PF01343 Peptidase family S49 NIY06_04235 PF12697 Alpha/beta hydrolase family NIY06_04240 PF00551 Formyl transferase NIY06_04245 PF00586 AIR synthase related protein, N-terminal domain NIY06_04245 PF02769 AIR synthase related protein, C-terminal domain NIY06_04250 PF01594 AI-2E family transporter NIY06_04255 PF00308 Bacterial dnaA protein NIY06_04255 PF08299 Bacterial dnaA protein helix-turn-helix NIY06_04255 PF11638 DnaA N-terminal domain NIY06_04285 PF00588 SpoU rRNA Methylase family NIY06_04285 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIY06_04290 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NIY06_04300 PF00691 OmpA family NIY06_04305 PF07676 WD40-like Beta Propeller Repeat NIY06_04305 PF04052 TolB amino-terminal domain NIY06_04315 PF02472 Biopolymer transport protein ExbD/TolR NIY06_04320 PF01618 MotA/TolQ/ExbB proton channel family NIY06_04325 PF03061 Thioesterase superfamily NIY06_04330 PF01546 Peptidase family M20/M25/M40 NIY06_04330 PF07687 Peptidase dimerisation domain NIY06_04335 PF17864 RuvB AAA lid domain NIY06_04335 PF05491 RuvB C-terminal winged helix domain NIY06_04335 PF05496 Holliday junction DNA helicase RuvB P-loop domain NIY06_04340 PF01330 RuvA N terminal domain NIY06_04340 PF07499 RuvA, C-terminal domain NIY06_04345 PF01966 HD domain NIY06_04350 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NIY06_04350 PF02769 AIR synthase related protein, C-terminal domain NIY06_04350 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NIY06_04355 PF07690 Major Facilitator Superfamily NIY06_04365 PF01784 NIF3 (NGG1p interacting factor 3) NIY06_04370 PF00378 Enoyl-CoA hydratase/isomerase NIY06_04375 PF00293 NUDIX domain NIY06_04375 PF01467 Cytidylyltransferase-like NIY06_04385 PF00578 AhpC/TSA family NIY06_04400 PF06508 Queuosine biosynthesis protein QueC NIY06_04410 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_04410 PF14602 Hexapeptide repeat of succinyl-transferase NIY06_04410 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NIY06_04420 PF03466 LysR substrate binding domain NIY06_04420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_04425 PF00005 ABC transporter NIY06_04425 PF12857 TOBE-like domain NIY06_04430 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_04435 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_04450 PF01063 Amino-transferase class IV NIY06_04455 PF02618 YceG-like family NIY06_04460 PF02223 Thymidylate kinase NIY06_04470 PF00890 FAD binding domain NIY06_04470 PF02910 Fumarate reductase flavoprotein C-term NIY06_04475 PF13180 PDZ domain NIY06_04485 PF06421 GTP-binding protein LepA C-terminus NIY06_04485 PF03144 Elongation factor Tu domain 2 NIY06_04485 PF00009 Elongation factor Tu GTP binding domain NIY06_04485 PF00679 Elongation factor G C-terminus NIY06_04490 PF10502 Signal peptidase, peptidase S26 NIY06_04500 PF14622 Ribonuclease-III-like NIY06_04500 PF00035 Double-stranded RNA binding motif NIY06_04505 PF07650 KH domain NIY06_04505 PF01926 50S ribosome-binding GTPase NIY06_04515 PF11967 Recombination protein O N terminal NIY06_04515 PF02565 Recombination protein O C terminal NIY06_04520 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NIY06_04525 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NIY06_04530 PF00106 short chain dehydrogenase NIY06_04560 PF00155 Aminotransferase class I and II NIY06_04570 PF00990 Diguanylate cyclase, GGDEF domain NIY06_04570 PF17151 Periplasmic sensor domain NIY06_04580 PF17757 UvrB interaction domain NIY06_04580 PF12344 Ultra-violet resistance protein B NIY06_04580 PF04851 Type III restriction enzyme, res subunit NIY06_04580 PF00271 Helicase conserved C-terminal domain NIY06_04580 PF02151 UvrB/uvrC motif NIY06_04590 PF00892 EamA-like transporter family NIY06_04595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIY06_04595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIY06_04610 PF01018 GTP1/OBG NIY06_04610 PF01926 50S ribosome-binding GTPase NIY06_04615 PF01472 PUA domain NIY06_04615 PF00696 Amino acid kinase family NIY06_04625 PF07759 Protein of unknown function (DUF1615) NIY06_04630 PF01207 Dihydrouridine synthase (Dus) NIY06_04635 PF03060 Nitronate monooxygenase NIY06_04650 PF02350 UDP-N-acetylglucosamine 2-epimerase NIY06_04680 PF03441 FAD binding domain of DNA photolyase NIY06_04680 PF00875 DNA photolyase NIY06_04685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY06_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_04695 PF00768 D-alanyl-D-alanine carboxypeptidase NIY06_04695 PF07943 Penicillin-binding protein 5, C-terminal domain NIY06_04705 PF03971 Monomeric isocitrate dehydrogenase NIY06_04710 PF00849 RNA pseudouridylate synthase NIY06_04715 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY06_04735 PF06779 Uncharacterised MFS-type transporter YbfB NIY06_04740 PF03466 LysR substrate binding domain NIY06_04740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_04745 PF00375 Sodium:dicarboxylate symporter family NIY06_04750 PF02567 Phenazine biosynthesis-like protein NIY06_04755 PF00675 Insulinase (Peptidase family M16) NIY06_04755 PF05193 Peptidase M16 inactive domain NIY06_04780 PF02581 Thiamine monophosphate synthase NIY06_04785 PF00202 Aminotransferase class-III NIY06_04795 PF00849 RNA pseudouridylate synthase NIY06_04800 PF12137 RNA polymerase recycling family C-terminal NIY06_04800 PF00271 Helicase conserved C-terminal domain NIY06_04800 PF18339 RapA N-terminal Tudor like domain 1 NIY06_04800 PF00176 SNF2 family N-terminal domain NIY06_04800 PF18337 RapA N-terminal Tudor like domain NIY06_04810 PF00440 Bacterial regulatory proteins, tetR family NIY06_04815 PF00970 Oxidoreductase FAD-binding domain NIY06_04815 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_04815 PF00175 Oxidoreductase NAD-binding domain NIY06_04820 PF00487 Fatty acid desaturase NIY06_04830 PF17754 MftR C-terminal domain NIY06_04830 PF00440 Bacterial regulatory proteins, tetR family NIY06_04840 PF00202 Aminotransferase class-III NIY06_04845 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIY06_04850 PF00171 Aldehyde dehydrogenase family NIY06_04855 PF01037 Lrp/AsnC ligand binding domain NIY06_04860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY06_04860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY06_04860 PF00205 Thiamine pyrophosphate enzyme, central domain NIY06_04865 PF00324 Amino acid permease NIY06_04870 PF12849 PBP superfamily domain NIY06_04875 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_04880 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_04885 PF00005 ABC transporter NIY06_04890 PF08496 Peptidase family S49 N-terminal NIY06_04890 PF01343 Peptidase family S49 NIY06_04905 PF08328 Adenylosuccinate lyase C-terminal NIY06_04905 PF00206 Lyase NIY06_04910 PF04356 Protein of unknown function (DUF489) NIY06_04920 PF00293 NUDIX domain NIY06_04920 PF13344 Haloacid dehalogenase-like hydrolase NIY06_04925 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_04930 PF07943 Penicillin-binding protein 5, C-terminal domain NIY06_04930 PF00768 D-alanyl-D-alanine carboxypeptidase NIY06_04945 PF01975 Survival protein SurE NIY06_04950 PF01476 LysM domain NIY06_04950 PF01551 Peptidase family M23 NIY06_04955 PF03466 LysR substrate binding domain NIY06_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_04960 PF13654 AAA domain NIY06_04960 PF05362 Lon protease (S16) C-terminal proteolytic domain NIY06_04965 PF07690 Major Facilitator Superfamily NIY06_04970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY06_04975 PF13593 SBF-like CPA transporter family (DUF4137) NIY06_04980 PF01197 Ribosomal protein L31 NIY06_04995 PF04055 Radical SAM superfamily NIY06_05000 PF01132 Elongation factor P (EF-P) OB domain NIY06_05000 PF08207 Elongation factor P (EF-P) KOW-like domain NIY06_05000 PF09285 Elongation factor P, C-terminal NIY06_05005 PF02554 Carbon starvation protein CstA NIY06_05005 PF13722 5TM C-terminal transporter carbon starvation CstA NIY06_05010 PF04328 Selenoprotein, putative NIY06_05045 PF06018 CodY GAF-like domain NIY06_05045 PF17853 GGDEF-like domain NIY06_05045 PF13556 PucR C-terminal helix-turn-helix domain NIY06_05060 PF00171 Aldehyde dehydrogenase family NIY06_05065 PF00324 Amino acid permease NIY06_05070 PF03466 LysR substrate binding domain NIY06_05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_05075 PF02028 BCCT, betaine/carnitine/choline family transporter NIY06_05080 PF02028 BCCT, betaine/carnitine/choline family transporter NIY06_05085 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY06_05085 PF00355 Rieske [2Fe-2S] domain NIY06_05090 PF00171 Aldehyde dehydrogenase family NIY06_05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_05100 PF18113 Rubredoxin binding C-terminal domain NIY06_05105 PF01266 FAD dependent oxidoreductase NIY06_05105 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NIY06_05125 PF00892 EamA-like transporter family NIY06_05135 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system NIY06_05140 PF00083 Sugar (and other) transporter NIY06_05145 PF13378 Enolase C-terminal domain-like NIY06_05145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIY06_05150 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_05150 PF00698 Acyl transferase domain NIY06_05150 PF08990 Erythronolide synthase docking NIY06_05150 PF09277 Erythronolide synthase, docking NIY06_05150 PF16197 Ketoacyl-synthetase C-terminal extension NIY06_05150 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_05150 PF08659 KR domain NIY06_05150 PF00550 Phosphopantetheine attachment site NIY06_05150 PF14765 Polyketide synthase dehydratase NIY06_05150 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_05155 PF00440 Bacterial regulatory proteins, tetR family NIY06_05175 PF02678 Pirin NIY06_05175 PF17954 Quercetinase C-terminal cupin domain NIY06_05185 PF08348 YheO-like PAS domain NIY06_05185 PF13309 HTH domain NIY06_05195 PF13193 AMP-binding enzyme C-terminal domain NIY06_05195 PF00668 Condensation domain NIY06_05195 PF00550 Phosphopantetheine attachment site NIY06_05195 PF00501 AMP-binding enzyme NIY06_05200 PF00550 Phosphopantetheine attachment site NIY06_05200 PF00501 AMP-binding enzyme NIY06_05200 PF00975 Thioesterase domain NIY06_05200 PF13193 AMP-binding enzyme C-terminal domain NIY06_05200 PF00668 Condensation domain NIY06_05205 PF01032 FecCD transport family NIY06_05210 PF01032 FecCD transport family NIY06_05215 PF00005 ABC transporter NIY06_05220 PF01497 Periplasmic binding protein NIY06_05225 PF07715 TonB-dependent Receptor Plug Domain NIY06_05225 PF00593 TonB dependent receptor NIY06_05230 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY06_05235 PF00501 AMP-binding enzyme NIY06_05235 PF00668 Condensation domain NIY06_05235 PF00550 Phosphopantetheine attachment site NIY06_05240 PF00501 AMP-binding enzyme NIY06_05240 PF13193 AMP-binding enzyme C-terminal domain NIY06_05245 PF00857 Isochorismatase family NIY06_05245 PF00550 Phosphopantetheine attachment site NIY06_05250 PF00282 Pyridoxal-dependent decarboxylase conserved domain NIY06_05260 PF00005 ABC transporter NIY06_05265 PF00005 ABC transporter NIY06_05270 PF00975 Thioesterase domain NIY06_05280 PF00425 chorismate binding enzyme NIY06_05290 PF01208 Uroporphyrinogen decarboxylase (URO-D) NIY06_05295 PF05675 Protein of unknown function (DUF817) NIY06_05310 PF00144 Beta-lactamase NIY06_05320 PF01227 GTP cyclohydrolase I NIY06_05325 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_05325 PF01799 [2Fe-2S] binding domain NIY06_05330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NIY06_05330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NIY06_05345 PF00218 Indole-3-glycerol phosphate synthase NIY06_05350 PF02885 Glycosyl transferase family, helical bundle domain NIY06_05350 PF00591 Glycosyl transferase family, a/b domain NIY06_05355 PF07715 TonB-dependent Receptor Plug Domain NIY06_05355 PF00593 TonB dependent receptor NIY06_05360 PF01433 Peptidase family M1 domain NIY06_05360 PF11838 ERAP1-like C-terminal domain NIY06_05365 PF00117 Glutamine amidotransferase class-I NIY06_05375 PF00854 POT family NIY06_05380 PF00120 Glutamine synthetase, catalytic domain NIY06_05380 PF03951 Glutamine synthetase, beta-Grasp domain NIY06_05385 PF04345 Chorismate lyase NIY06_05390 PF01040 UbiA prenyltransferase family NIY06_05425 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NIY06_05425 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NIY06_05430 PF01784 NIF3 (NGG1p interacting factor 3) NIY06_05435 PF13180 PDZ domain NIY06_05440 PF12627 Probable RNA and SrmB- binding site of polymerase A NIY06_05440 PF01743 Poly A polymerase head domain NIY06_05445 PF00390 Malic enzyme, N-terminal domain NIY06_05445 PF03949 Malic enzyme, NAD binding domain NIY06_05445 PF01515 Phosphate acetyl/butaryl transferase NIY06_05450 PF00563 EAL domain NIY06_05450 PF00990 Diguanylate cyclase, GGDEF domain NIY06_05450 PF03707 Bacterial signalling protein N terminal repeat NIY06_05455 PF04452 RNA methyltransferase NIY06_05460 PF02219 Methylenetetrahydrofolate reductase NIY06_05465 PF05221 S-adenosyl-L-homocysteine hydrolase NIY06_05465 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NIY06_05480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_05480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_05480 PF09317 Domain of unknown function (DUF1974) NIY06_05485 PF04055 Radical SAM superfamily NIY06_05490 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_05490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY06_05500 PF07690 Major Facilitator Superfamily NIY06_05510 PF00557 Metallopeptidase family M24 NIY06_05515 PF00318 Ribosomal protein S2 NIY06_05520 PF00889 Elongation factor TS NIY06_05530 PF12833 Helix-turn-helix domain NIY06_05550 PF03330 Lytic transglycolase NIY06_05550 PF05036 Sporulation related domain NIY06_05555 PF13406 Transglycosylase SLT domain NIY06_05560 PF01098 Cell cycle protein NIY06_05570 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NIY06_05570 PF14489 QueF-like protein NIY06_05575 PF01061 ABC-2 type transporter NIY06_05580 PF00005 ABC transporter NIY06_05610 PF00464 Serine hydroxymethyltransferase NIY06_05615 PF02321 Outer membrane efflux protein NIY06_05620 PF00873 AcrB/AcrD/AcrF family NIY06_05625 PF13533 Biotin-lipoyl like NIY06_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_05630 PF03466 LysR substrate binding domain NIY06_05635 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY06_05640 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_05645 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_05650 PF00005 ABC transporter NIY06_05655 PF00893 Small Multidrug Resistance protein NIY06_05660 PF00037 4Fe-4S binding domain NIY06_05665 PF01136 Peptidase family U32 NIY06_05665 PF16325 Peptidase family U32 C-terminal domain NIY06_05670 PF00392 Bacterial regulatory proteins, gntR family NIY06_05670 PF00155 Aminotransferase class I and II NIY06_05675 PF02567 Phenazine biosynthesis-like protein NIY06_05680 PF00970 Oxidoreductase FAD-binding domain NIY06_05680 PF00175 Oxidoreductase NAD-binding domain NIY06_05685 PF01980 tRNA-methyltransferase O NIY06_05685 PF18389 TrmO C-terminal domain NIY06_05695 PF00437 Type II/IV secretion system protein NIY06_05695 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIY06_05705 PF00072 Response regulator receiver domain NIY06_05705 PF00486 Transcriptional regulatory protein, C terminal NIY06_05710 PF08521 Two-component sensor kinase N-terminal NIY06_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_05710 PF00512 His Kinase A (phospho-acceptor) domain NIY06_05720 PF00293 NUDIX domain NIY06_05730 PF00912 Transglycosylase NIY06_05730 PF00905 Penicillin binding protein transpeptidase domain NIY06_05730 PF14814 Bifunctional transglycosylase second domain NIY06_05735 PF01513 ATP-NAD kinase NIY06_05740 PF07023 Protein of unknown function (DUF1315) NIY06_05745 PF00591 Glycosyl transferase family, a/b domain NIY06_05745 PF02885 Glycosyl transferase family, helical bundle domain NIY06_05750 PF00375 Sodium:dicarboxylate symporter family NIY06_05755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_05755 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_05755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_05760 PF00756 Putative esterase NIY06_05765 PF01817 Chorismate mutase type II NIY06_05765 PF01842 ACT domain NIY06_05765 PF00800 Prephenate dehydratase NIY06_05770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIY06_05780 PF01546 Peptidase family M20/M25/M40 NIY06_05780 PF07687 Peptidase dimerisation domain NIY06_05785 PF12706 Beta-lactamase superfamily domain NIY06_05795 PF03883 Peroxide stress protein YaaA NIY06_05805 PF05690 Thiazole biosynthesis protein ThiG NIY06_05815 PF04241 Protein of unknown function (DUF423) NIY06_05820 PF00140 Sigma-70 factor, region 1.2 NIY06_05820 PF04542 Sigma-70 region 2 NIY06_05820 PF04545 Sigma-70, region 4 NIY06_05835 PF00313 'Cold-shock' DNA-binding domain NIY06_05840 PF00270 DEAD/DEAH box helicase NIY06_05840 PF00271 Helicase conserved C-terminal domain NIY06_05850 PF00881 Nitroreductase family NIY06_05855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NIY06_05855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NIY06_05865 PF00589 Phage integrase family NIY06_05960 PF01555 DNA methylase NIY06_06195 PF01180 Dihydroorotate dehydrogenase NIY06_06200 PF02674 Colicin V production protein NIY06_06205 PF00156 Phosphoribosyl transferase domain NIY06_06220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY06_06220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY06_06225 PF01435 Peptidase family M48 NIY06_06230 PF09424 Yqey-like protein NIY06_06235 PF01165 Ribosomal protein S21 NIY06_06240 PF00814 Glycoprotease family NIY06_06260 PF00069 Protein kinase domain NIY06_06285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_06285 PF03466 LysR substrate binding domain NIY06_06290 PF00202 Aminotransferase class-III NIY06_06295 PF00171 Aldehyde dehydrogenase family NIY06_06300 PF00324 Amino acid permease NIY06_06330 PF04076 Bacterial OB fold (BOF) protein NIY06_06355 PF00561 alpha/beta hydrolase fold NIY06_06360 PF03616 Sodium/glutamate symporter NIY06_06370 PF07729 FCD domain NIY06_06370 PF00392 Bacterial regulatory proteins, gntR family NIY06_06420 PF08946 Osmosensory transporter coiled coil NIY06_06420 PF00083 Sugar (and other) transporter NIY06_06445 PF00155 Aminotransferase class I and II NIY06_06450 PF06826 Predicted Permease Membrane Region NIY06_06450 PF02080 TrkA-C domain NIY06_06455 PF13610 DDE domain NIY06_06495 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NIY06_06535 PF02767 DNA polymerase III beta subunit, central domain NIY06_06535 PF02768 DNA polymerase III beta subunit, C-terminal domain NIY06_06535 PF00712 DNA polymerase III beta subunit, N-terminal domain NIY06_06615 PF00905 Penicillin binding protein transpeptidase domain NIY06_06635 PF13614 AAA domain NIY06_06640 PF10544 T5orf172 domain NIY06_06680 PF13356 Arm DNA-binding domain NIY06_06680 PF00589 Phage integrase family NIY06_06735 PF00436 Single-strand binding protein family NIY06_06755 PF07693 KAP family P-loop domain NIY06_06770 PF01026 TatD related DNase NIY06_06790 PF00083 Sugar (and other) transporter NIY06_06795 PF00701 Dihydrodipicolinate synthetase family NIY06_06805 PF08281 Sigma-70, region 4 NIY06_06805 PF04542 Sigma-70 region 2 NIY06_06815 PF00593 TonB dependent receptor NIY06_06815 PF07715 TonB-dependent Receptor Plug Domain NIY06_06825 PF04575 Protein of unknown function (DUF560) NIY06_06835 PF01126 Heme oxygenase NIY06_06860 PF13520 Amino acid permease NIY06_06865 PF02574 Homocysteine S-methyltransferase NIY06_06875 PF06039 Malate:quinone oxidoreductase (Mqo) NIY06_06880 PF05199 GMC oxidoreductase NIY06_06880 PF00732 GMC oxidoreductase NIY06_06885 PF00171 Aldehyde dehydrogenase family NIY06_06890 PF13977 BetI-type transcriptional repressor, C-terminal NIY06_06890 PF00440 Bacterial regulatory proteins, tetR family NIY06_06895 PF02028 BCCT, betaine/carnitine/choline family transporter NIY06_06900 PF02028 BCCT, betaine/carnitine/choline family transporter NIY06_06910 PF03061 Thioesterase superfamily NIY06_06920 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY06_06920 PF07683 Cobalamin synthesis protein cobW C-terminal domain NIY06_06925 PF00375 Sodium:dicarboxylate symporter family NIY06_06930 PF07152 YaeQ protein NIY06_06935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY06_06940 PF14883 Hypothetical glycosyl hydrolase family 13 NIY06_06940 PF01522 Polysaccharide deacetylase NIY06_06945 PF00535 Glycosyl transferase family 2 NIY06_06955 PF00378 Enoyl-CoA hydratase/isomerase NIY06_06970 PF09339 IclR helix-turn-helix domain NIY06_06970 PF01614 Bacterial transcriptional regulator NIY06_06975 PF00355 Rieske [2Fe-2S] domain NIY06_06985 PF00355 Rieske [2Fe-2S] domain NIY06_06995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NIY06_07000 PF14759 Reductase C-terminal NIY06_07000 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_07005 PF07690 Major Facilitator Superfamily NIY06_07015 PF12697 Alpha/beta hydrolase family NIY06_07025 PF01958 Domain of unknown function DUF108 NIY06_07025 PF03447 Homoserine dehydrogenase, NAD binding domain NIY06_07030 PF00171 Aldehyde dehydrogenase family NIY06_07035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY06_07035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY06_07035 PF00205 Thiamine pyrophosphate enzyme, central domain NIY06_07045 PF07690 Major Facilitator Superfamily NIY06_07050 PF01327 Polypeptide deformylase NIY06_07055 PF04960 Glutaminase NIY06_07060 PF02311 AraC-like ligand binding domain NIY06_07060 PF12833 Helix-turn-helix domain NIY06_07065 PF07690 Major Facilitator Superfamily NIY06_07070 PF01263 Aldose 1-epimerase NIY06_07080 PF03466 LysR substrate binding domain NIY06_07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_07090 PF07690 Major Facilitator Superfamily NIY06_07095 PF00456 Transketolase, thiamine diphosphate binding domain NIY06_07100 PF02780 Transketolase, C-terminal domain NIY06_07100 PF02779 Transketolase, pyrimidine binding domain NIY06_07105 PF02310 B12 binding domain NIY06_07105 PF02965 Vitamin B12 dependent methionine synthase, activation domain NIY06_07105 PF00809 Pterin binding enzyme NIY06_07105 PF02607 B12 binding domain NIY06_07105 PF02574 Homocysteine S-methyltransferase NIY06_07110 PF01384 Phosphate transporter family NIY06_07115 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_07130 PF03781 Sulfatase-modifying factor enzyme 1 NIY06_07135 PF00884 Sulfatase NIY06_07145 PF01521 Iron-sulphur cluster biosynthesis NIY06_07145 PF01106 NifU-like domain NIY06_07150 PF07715 TonB-dependent Receptor Plug Domain NIY06_07150 PF00593 TonB dependent receptor NIY06_07160 PF00561 alpha/beta hydrolase fold NIY06_07165 PF00484 Carbonic anhydrase NIY06_07170 PF13472 GDSL-like Lipase/Acylhydrolase family NIY06_07175 PF00005 ABC transporter NIY06_07185 PF01694 Rhomboid family NIY06_07190 PF00912 Transglycosylase NIY06_07195 PF13090 Polyphosphate kinase C-terminal domain 2 NIY06_07195 PF17941 Polyphosphate kinase C-terminal domain 1 NIY06_07195 PF13089 Polyphosphate kinase N-terminal domain NIY06_07195 PF02503 Polyphosphate kinase middle domain NIY06_07205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_07205 PF03466 LysR substrate binding domain NIY06_07210 PF00561 alpha/beta hydrolase fold NIY06_07215 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_07215 PF18113 Rubredoxin binding C-terminal domain NIY06_07220 PF00301 Rubredoxin NIY06_07235 PF00152 tRNA synthetases class II (D, K and N) NIY06_07235 PF01336 OB-fold nucleic acid binding domain NIY06_07240 PF14052 Capsule assembly protein Wzi NIY06_07250 PF01507 Phosphoadenosine phosphosulfate reductase family NIY06_07255 PF00009 Elongation factor Tu GTP binding domain NIY06_07270 PF03600 Citrate transporter NIY06_07275 PF01595 Cyclin M transmembrane N-terminal domain NIY06_07275 PF03471 Transporter associated domain NIY06_07275 PF00571 CBS domain NIY06_07280 PF03466 LysR substrate binding domain NIY06_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_07285 PF00463 Isocitrate lyase family NIY06_07300 PF01774 UreD urease accessory protein NIY06_07305 PF00547 Urease, gamma subunit NIY06_07310 PF00699 Urease beta subunit NIY06_07315 PF01979 Amidohydrolase family NIY06_07315 PF00449 Urease alpha-subunit, N-terminal domain NIY06_07320 PF02814 UreE urease accessory protein, N-terminal domain NIY06_07320 PF05194 UreE urease accessory protein, C-terminal domain NIY06_07325 PF01730 UreF NIY06_07330 PF02492 CobW/HypB/UreG, nucleotide-binding domain NIY06_07345 PF03717 Penicillin-binding Protein dimerisation domain NIY06_07345 PF00905 Penicillin binding protein transpeptidase domain NIY06_07360 PF05191 Adenylate kinase, active site lid NIY06_07370 PF00730 HhH-GPD superfamily base excision DNA repair protein NIY06_07370 PF10576 Iron-sulfur binding domain of endonuclease III NIY06_07370 PF00633 Helix-hairpin-helix motif NIY06_07375 PF04060 Putative Fe-S cluster NIY06_07380 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NIY06_07380 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NIY06_07390 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NIY06_07395 PF02590 Predicted SPOUT methyltransferase NIY06_07400 PF05362 Lon protease (S16) C-terminal proteolytic domain NIY06_07400 PF02190 ATP-dependent protease La (LON) substrate-binding domain NIY06_07400 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_07405 PF05662 Coiled stalk of trimeric autotransporter adhesin NIY06_07405 PF13018 Extended Signal Peptide of Type V secretion system NIY06_07405 PF03895 YadA-like membrane anchor domain NIY06_07405 PF05658 Head domain of trimeric autotransporter adhesin NIY06_07410 PF00691 OmpA family NIY06_07410 PF04355 SmpA / OmlA family NIY06_07415 PF01812 5-formyltetrahydrofolate cyclo-ligase family NIY06_07740 PF08525 Opacity-associated protein A N-terminal motif NIY06_07740 PF01476 LysM domain NIY06_07740 PF01551 Peptidase family M23 NIY06_07785 PF00884 Sulfatase NIY06_07785 PF08019 Phosphoethanolamine transferase EptA/EptB NIY06_07840 PF00717 Peptidase S24-like NIY06_07840 PF01726 LexA DNA binding domain NIY06_07855 PF00772 DnaB-like helicase N terminal domain NIY06_07855 PF03796 DnaB-like helicase C terminal domain NIY06_07955 PF04860 Phage portal protein NIY06_08015 PF01464 Transglycosylase SLT domain NIY06_08015 PF01551 Peptidase family M23 NIY06_08015 PF10145 Phage-related minor tail protein NIY06_08100 PF00557 Metallopeptidase family M24 NIY06_08100 PF05195 Aminopeptidase P, N-terminal domain NIY06_08105 PF01494 FAD binding domain NIY06_08110 PF01494 FAD binding domain NIY06_08120 PF13411 MerR HTH family regulatory protein NIY06_08130 PF01810 LysE type translocator NIY06_08135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_08135 PF03466 LysR substrate binding domain NIY06_08145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NIY06_08150 PF02021 Uncharacterised protein family UPF0102 NIY06_08155 PF04972 BON domain NIY06_08165 PF00293 NUDIX domain NIY06_08165 PF09297 NADH pyrophosphatase zinc ribbon domain NIY06_08175 PF00929 Exonuclease NIY06_08180 PF01476 LysM domain NIY06_08180 PF01464 Transglycosylase SLT domain NIY06_08180 PF01476 LysM domain NIY06_08180 PF01464 Transglycosylase SLT domain NIY06_08185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NIY06_08190 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_08195 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_08195 PF12911 N-terminal TM domain of oligopeptide transport permease C NIY06_08200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIY06_08200 PF00005 ABC transporter NIY06_08205 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_08205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY06_08210 PF07715 TonB-dependent Receptor Plug Domain NIY06_08210 PF00593 TonB dependent receptor NIY06_08220 PF00929 Exonuclease NIY06_08225 PF01979 Amidohydrolase family NIY06_08230 PF00563 EAL domain NIY06_08230 PF01590 GAF domain NIY06_08230 PF00990 Diguanylate cyclase, GGDEF domain NIY06_08230 PF00360 Phytochrome region NIY06_08235 PF00764 Arginosuccinate synthase NIY06_08240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY06_08240 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_08255 PF05987 Bacterial protein of unknown function (DUF898) NIY06_08260 PF03180 NLPA lipoprotein NIY06_08280 PF04717 Type VI secretion system, phage-baseplate injector NIY06_08280 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY06_08280 PF13296 Putative type VI secretion system Rhs element Vgr NIY06_08285 PF05593 RHS Repeat NIY06_08285 PF03527 RHS protein NIY06_08325 PF00324 Amino acid permease NIY06_08330 PF01266 FAD dependent oxidoreductase NIY06_08335 PF00324 Amino acid permease NIY06_08345 PF07729 FCD domain NIY06_08345 PF00392 Bacterial regulatory proteins, gntR family NIY06_08355 PF00171 Aldehyde dehydrogenase family NIY06_08365 PF00202 Aminotransferase class-III NIY06_08370 PF04958 Arginine N-succinyltransferase beta subunit NIY06_08380 PF13610 DDE domain NIY06_08385 PF02796 Helix-turn-helix domain of resolvase NIY06_08385 PF00239 Resolvase, N terminal domain NIY06_08395 PF13610 DDE domain NIY06_08405 PF02796 Helix-turn-helix domain of resolvase NIY06_08405 PF00239 Resolvase, N terminal domain NIY06_08410 PF13610 DDE domain NIY06_08425 PF01636 Phosphotransferase enzyme family NIY06_08430 PF13610 DDE domain NIY06_08450 PF00809 Pterin binding enzyme NIY06_08455 PF00893 Small Multidrug Resistance protein NIY06_08475 PF00583 Acetyltransferase (GNAT) family NIY06_08480 PF13495 Phage integrase, N-terminal SAM-like domain NIY06_08480 PF00589 Phage integrase family NIY06_08490 PF11809 Domain of unknown function (DUF3330) NIY06_08490 PF00563 EAL domain NIY06_08495 PF02796 Helix-turn-helix domain of resolvase NIY06_08495 PF00239 Resolvase, N terminal domain NIY06_08505 PF13610 DDE domain NIY06_08515 PF13610 DDE domain NIY06_08530 PF00375 Sodium:dicarboxylate symporter family NIY06_08540 PF16123 Hydroxyacylglutathione hydrolase C-terminus NIY06_08540 PF00753 Metallo-beta-lactamase superfamily NIY06_08545 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_08550 PF00005 ABC transporter NIY06_08550 PF09383 NIL domain NIY06_08555 PF03180 NLPA lipoprotein NIY06_08560 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NIY06_08560 PF02843 Phosphoribosylglycinamide synthetase, C domain NIY06_08560 PF02844 Phosphoribosylglycinamide synthetase, N domain NIY06_08565 PF02142 MGS-like domain NIY06_08565 PF01808 AICARFT/IMPCHase bienzyme NIY06_08570 PF02954 Bacterial regulatory protein, Fis family NIY06_08590 PF01134 Glucose inhibited division protein A NIY06_08590 PF13932 GidA associated domain NIY06_08600 PF14403 Circularly permuted ATP-grasp type 2 NIY06_08610 PF08379 Bacterial transglutaminase-like N-terminal region NIY06_08610 PF01841 Transglutaminase-like superfamily NIY06_08620 PF00842 Alanine racemase, C-terminal domain NIY06_08620 PF01168 Alanine racemase, N-terminal domain NIY06_08625 PF00772 DnaB-like helicase N terminal domain NIY06_08625 PF03796 DnaB-like helicase C terminal domain NIY06_08630 PF03948 Ribosomal protein L9, C-terminal domain NIY06_08630 PF01281 Ribosomal protein L9, N-terminal domain NIY06_08635 PF01084 Ribosomal protein S18 NIY06_08640 PF01250 Ribosomal protein S6 NIY06_08645 PF01040 UbiA prenyltransferase family NIY06_08650 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NIY06_08655 PF00510 Cytochrome c oxidase subunit III NIY06_08660 PF00115 Cytochrome C and Quinol oxidase polypeptide I NIY06_08665 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NIY06_08665 PF06481 COX Aromatic Rich Motif NIY06_08675 PF02896 PEP-utilising enzyme, TIM barrel domain NIY06_08675 PF00391 PEP-utilising enzyme, mobile domain NIY06_08675 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NIY06_08680 PF03618 Kinase/pyrophosphorylase NIY06_08690 PF01522 Polysaccharide deacetylase NIY06_08690 PF14883 Hypothetical glycosyl hydrolase family 13 NIY06_08695 PF00535 Glycosyl transferase family 2 NIY06_08700 PF13994 PgaD-like protein NIY06_08710 PF00296 Luciferase-like monooxygenase NIY06_08725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_08725 PF03466 LysR substrate binding domain NIY06_08735 PF00472 RF-1 domain NIY06_08735 PF03462 PCRF domain NIY06_08740 PF17827 PrmC N-terminal domain NIY06_08740 PF13847 Methyltransferase domain NIY06_08745 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_08750 PF09084 NMT1/THI5 like NIY06_08755 PF12833 Helix-turn-helix domain NIY06_08760 PF00106 short chain dehydrogenase NIY06_08765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_08765 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_08765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_08770 PF13193 AMP-binding enzyme C-terminal domain NIY06_08770 PF00501 AMP-binding enzyme NIY06_08775 PF01613 Flavin reductase like domain NIY06_08780 PF00899 ThiF family NIY06_08785 PF03109 ABC1 family NIY06_08800 PF03814 Potassium-transporting ATPase A subunit NIY06_08810 PF02669 K+-transporting ATPase, c chain NIY06_08815 PF00512 His Kinase A (phospho-acceptor) domain NIY06_08815 PF02702 Osmosensitive K+ channel His kinase sensor domain NIY06_08815 PF13493 Domain of unknown function (DUF4118) NIY06_08815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_08820 PF00072 Response regulator receiver domain NIY06_08820 PF00486 Transcriptional regulatory protein, C terminal NIY06_08825 PF00120 Glutamine synthetase, catalytic domain NIY06_08835 PF03232 Ubiquinone biosynthesis protein COQ7 NIY06_08840 PF07690 Major Facilitator Superfamily NIY06_08845 PF07244 Surface antigen variable number repeat NIY06_08845 PF17243 POTRA domain TamA domain 1 NIY06_08845 PF01103 Surface antigen NIY06_08860 PF11791 Aconitate B N-terminal domain NIY06_08860 PF00330 Aconitase family (aconitate hydratase) NIY06_08860 PF06434 Aconitate hydratase 2 N-terminus NIY06_08870 PF00027 Cyclic nucleotide-binding domain NIY06_08870 PF00520 Ion transport protein NIY06_08875 PF07690 Major Facilitator Superfamily NIY06_08890 PF03466 LysR substrate binding domain NIY06_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_08895 PF04284 Protein of unknown function (DUF441) NIY06_08905 PF01479 S4 domain NIY06_08905 PF00849 RNA pseudouridylate synthase NIY06_08920 PF00849 RNA pseudouridylate synthase NIY06_08920 PF01479 S4 domain NIY06_08925 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NIY06_08930 PF01119 DNA mismatch repair protein, C-terminal domain NIY06_08930 PF08676 MutL C terminal dimerisation domain NIY06_08945 PF17209 Hfq protein NIY06_08955 PF00881 Nitroreductase family NIY06_08965 PF00149 Calcineurin-like phosphoesterase NIY06_08970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIY06_08975 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY06_08975 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NIY06_08980 PF00117 Glutamine amidotransferase class-I NIY06_08980 PF00958 GMP synthase C terminal domain NIY06_08980 PF02540 NAD synthase NIY06_08985 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NIY06_08990 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NIY06_08995 PF13520 Amino acid permease NIY06_09000 PF00171 Aldehyde dehydrogenase family NIY06_09015 PF00465 Iron-containing alcohol dehydrogenase NIY06_09020 PF05970 PIF1-like helicase NIY06_09020 PF14493 Helix-turn-helix domain NIY06_09030 PF06445 GyrI-like small molecule binding domain NIY06_09035 PF02110 Hydroxyethylthiazole kinase family NIY06_09050 PF11940 Domain of unknown function (DUF3458) Ig-like fold NIY06_09050 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NIY06_09050 PF01433 Peptidase family M1 domain NIY06_09060 PF00106 short chain dehydrogenase NIY06_09070 PF01817 Chorismate mutase type II NIY06_09075 PF01037 Lrp/AsnC ligand binding domain NIY06_09090 PF00440 Bacterial regulatory proteins, tetR family NIY06_09095 PF00593 TonB dependent receptor NIY06_09095 PF07715 TonB-dependent Receptor Plug Domain NIY06_09100 PF00924 Mechanosensitive ion channel NIY06_09135 PF00593 TonB dependent receptor NIY06_09135 PF07715 TonB-dependent Receptor Plug Domain NIY06_09155 PF00005 ABC transporter NIY06_09155 PF12848 ABC transporter NIY06_09160 PF00582 Universal stress protein family NIY06_09185 PF00690 Cation transporter/ATPase, N-terminus NIY06_09185 PF00689 Cation transporting ATPase, C-terminus NIY06_09190 PF02308 MgtC family NIY06_09195 PF03594 Benzoate membrane transport protein NIY06_09200 PF01037 Lrp/AsnC ligand binding domain NIY06_09205 PF01810 LysE type translocator NIY06_09210 PF00923 Transaldolase/Fructose-6-phosphate aldolase NIY06_09215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_09215 PF03466 LysR substrate binding domain NIY06_09225 PF02803 Thiolase, C-terminal domain NIY06_09225 PF00108 Thiolase, N-terminal domain NIY06_09235 PF01575 MaoC like domain NIY06_09240 PF00144 Beta-lactamase NIY06_09250 PF07690 Major Facilitator Superfamily NIY06_09255 PF12170 DNA polymerase III tau subunit V interacting with alpha NIY06_09255 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NIY06_09255 PF12169 DNA polymerase III subunits gamma and tau domain III NIY06_09260 PF04185 Phosphoesterase family NIY06_09260 PF05506 Domain of unknown function (DUF756) NIY06_09265 PF03061 Thioesterase superfamily NIY06_09270 PF00465 Iron-containing alcohol dehydrogenase NIY06_09280 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIY06_09285 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NIY06_09285 PF01565 FAD binding domain NIY06_09300 PF01645 Conserved region in glutamate synthase NIY06_09410 PF01555 DNA methylase NIY06_09595 PF03869 Arc-like DNA binding domain NIY06_09615 PF01551 Peptidase family M23 NIY06_09615 PF10145 Phage-related minor tail protein NIY06_09615 PF01464 Transglycosylase SLT domain NIY06_09685 PF12832 MFS_1 like family NIY06_09695 PF02785 Biotin carboxylase C-terminal domain NIY06_09695 PF00289 Biotin carboxylase, N-terminal domain NIY06_09695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY06_09700 PF00364 Biotin-requiring enzyme NIY06_09705 PF01220 Dehydroquinase class II NIY06_09710 PF00817 impB/mucB/samB family NIY06_09710 PF13438 Domain of unknown function (DUF4113) NIY06_09710 PF11799 impB/mucB/samB family C-terminal domain NIY06_09720 PF00005 ABC transporter NIY06_09725 PF00072 Response regulator receiver domain NIY06_09725 PF00486 Transcriptional regulatory protein, C terminal NIY06_09735 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIY06_09735 PF13806 Rieske-like [2Fe-2S] domain NIY06_09735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY06_09735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY06_09735 PF04324 BFD-like [2Fe-2S] binding domain NIY06_09735 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_09740 PF04324 BFD-like [2Fe-2S] binding domain NIY06_09740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NIY06_09740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NIY06_09740 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_09740 PF18267 Rubredoxin NAD+ reductase C-terminal domain NIY06_09745 PF04324 BFD-like [2Fe-2S] binding domain NIY06_09745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY06_09745 PF00384 Molybdopterin oxidoreductase NIY06_09745 PF01568 Molydopterin dinucleotide binding domain NIY06_09750 PF12804 MobA-like NTP transferase domain NIY06_09755 PF00384 Molybdopterin oxidoreductase NIY06_09755 PF01568 Molydopterin dinucleotide binding domain NIY06_09755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY06_09760 PF06463 Molybdenum Cofactor Synthesis C NIY06_09760 PF04055 Radical SAM superfamily NIY06_09770 PF02391 MoaE protein NIY06_09775 PF01967 MoaC family NIY06_09775 PF00994 Probable molybdopterin binding domain NIY06_09780 PF00994 Probable molybdopterin binding domain NIY06_09780 PF03454 MoeA C-terminal region (domain IV) NIY06_09780 PF03453 MoeA N-terminal region (domain I and II) NIY06_09785 PF01638 HxlR-like helix-turn-helix NIY06_09790 PF00392 Bacterial regulatory proteins, gntR family NIY06_09790 PF00155 Aminotransferase class I and II NIY06_09795 PF00892 EamA-like transporter family NIY06_09815 PF02635 DsrE/DsrF-like family NIY06_09820 PF16363 GDP-mannose 4,6 dehydratase NIY06_09825 PF10415 Fumarase C C-terminus NIY06_09825 PF00206 Lyase NIY06_09845 PF01266 FAD dependent oxidoreductase NIY06_09855 PF02542 YgbB family NIY06_09865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIY06_09865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIY06_09885 PF02954 Bacterial regulatory protein, Fis family NIY06_09885 PF00072 Response regulator receiver domain NIY06_09885 PF00158 Sigma-54 interaction domain NIY06_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_09890 PF00989 PAS fold NIY06_09890 PF00512 His Kinase A (phospho-acceptor) domain NIY06_09895 PF00919 Uncharacterized protein family UPF0004 NIY06_09895 PF04055 Radical SAM superfamily NIY06_09895 PF18693 TRAM domain NIY06_09900 PF00696 Amino acid kinase family NIY06_09905 PF01765 Ribosome recycling factor NIY06_09910 PF01255 Putative undecaprenyl diphosphate synthase NIY06_09920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NIY06_09920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NIY06_09920 PF13288 DXP reductoisomerase C-terminal domain NIY06_09925 PF13180 PDZ domain NIY06_09925 PF17820 PDZ domain NIY06_09925 PF02163 Peptidase family M50 NIY06_09930 PF01103 Surface antigen NIY06_09930 PF07244 Surface antigen variable number repeat NIY06_09940 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NIY06_09940 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_09945 PF07977 FabA-like domain NIY06_09950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NIY06_09950 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_09965 PF02631 RecX family NIY06_09970 PF00154 recA bacterial DNA recombination protein NIY06_09975 PF01479 S4 domain NIY06_09980 PF13419 Haloacid dehalogenase-like hydrolase NIY06_10005 PF01037 Lrp/AsnC ligand binding domain NIY06_10010 PF00266 Aminotransferase class-V NIY06_10015 PF00324 Amino acid permease NIY06_10030 PF05922 Peptidase inhibitor I9 NIY06_10030 PF00082 Subtilase family NIY06_10035 PF00916 Sulfate permease family NIY06_10035 PF01740 STAS domain NIY06_10040 PF02586 SOS response associated peptidase (SRAP) NIY06_10045 PF07995 Glucose / Sorbosone dehydrogenase NIY06_10055 PF03707 Bacterial signalling protein N terminal repeat NIY06_10055 PF00990 Diguanylate cyclase, GGDEF domain NIY06_10055 PF00563 EAL domain NIY06_10075 PF02378 Phosphotransferase system, EIIC NIY06_10075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NIY06_10080 PF00294 pfkB family carbohydrate kinase NIY06_10085 PF05524 PEP-utilising enzyme, N-terminal NIY06_10085 PF00391 PEP-utilising enzyme, mobile domain NIY06_10085 PF02896 PEP-utilising enzyme, TIM barrel domain NIY06_10085 PF00381 PTS HPr component phosphorylation site NIY06_10085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NIY06_10110 PF05525 Branched-chain amino acid transport protein NIY06_10115 PF00557 Metallopeptidase family M24 NIY06_10120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_10120 PF03466 LysR substrate binding domain NIY06_10130 PF00462 Glutaredoxin NIY06_10135 PF00202 Aminotransferase class-III NIY06_10140 PF00478 IMP dehydrogenase / GMP reductase domain NIY06_10140 PF00571 CBS domain NIY06_10165 PF02881 SRP54-type protein, helical bundle domain NIY06_10165 PF00448 SRP54-type protein, GTPase domain NIY06_10175 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NIY06_10190 PF08173 Membrane bound YbgT-like protein NIY06_10195 PF02322 Cytochrome bd terminal oxidase subunit II NIY06_10200 PF01654 Cytochrome bd terminal oxidase subunit I NIY06_10210 PF07290 Protein of unknown function (DUF1449) NIY06_10220 PF00294 pfkB family carbohydrate kinase NIY06_10225 PF07715 TonB-dependent Receptor Plug Domain NIY06_10225 PF00593 TonB dependent receptor NIY06_10230 PF08367 Peptidase M16C associated NIY06_10230 PF05193 Peptidase M16 inactive domain NIY06_10230 PF00675 Insulinase (Peptidase family M16) NIY06_10235 PF02253 Phospholipase A1 NIY06_10240 PF02386 Cation transport protein NIY06_10245 PF02080 TrkA-C domain NIY06_10245 PF02254 TrkA-N domain NIY06_10250 PF00585 C-terminal regulatory domain of Threonine dehydratase NIY06_10250 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_10255 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NIY06_10270 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIY06_10270 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIY06_10280 PF02617 ATP-dependent Clp protease adaptor protein ClpS NIY06_10285 PF17871 AAA lid domain NIY06_10285 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_10285 PF07724 AAA domain (Cdc48 subfamily) NIY06_10285 PF02861 Clp amino terminal domain, pathogenicity island component NIY06_10285 PF10431 C-terminal, D2-small domain, of ClpB protein NIY06_10290 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NIY06_10295 PF00793 DAHP synthetase I family NIY06_10310 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_10310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY06_10340 PF06418 CTP synthase N-terminus NIY06_10340 PF00117 Glutamine amidotransferase class-I NIY06_10345 PF00793 DAHP synthetase I family NIY06_10350 PF00113 Enolase, C-terminal TIM barrel domain NIY06_10350 PF03952 Enolase, N-terminal domain NIY06_10355 PF04239 Protein of unknown function (DUF421) NIY06_10360 PF04977 Septum formation initiator NIY06_10365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NIY06_10370 PF01144 Coenzyme A transferase NIY06_10375 PF01144 Coenzyme A transferase NIY06_10380 PF02803 Thiolase, C-terminal domain NIY06_10380 PF00108 Thiolase, N-terminal domain NIY06_10385 PF10397 Adenylosuccinate lyase C-terminus NIY06_10385 PF00206 Lyase NIY06_10390 PF00561 alpha/beta hydrolase fold NIY06_10395 PF07690 Major Facilitator Superfamily NIY06_10400 PF02627 Carboxymuconolactone decarboxylase family NIY06_10405 PF00775 Dioxygenase NIY06_10405 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NIY06_10410 PF00775 Dioxygenase NIY06_10415 PF01487 Type I 3-dehydroquinase NIY06_10420 PF05048 Periplasmic copper-binding protein (NosD) NIY06_10425 PF04966 Carbohydrate-selective porin, OprB family NIY06_10430 PF01011 PQQ enzyme repeat NIY06_10430 PF13360 PQQ-like domain NIY06_10440 PF04143 Sulphur transport NIY06_10450 PF00753 Metallo-beta-lactamase superfamily NIY06_10455 PF09339 IclR helix-turn-helix domain NIY06_10455 PF01614 Bacterial transcriptional regulator NIY06_10460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_10460 PF03466 LysR substrate binding domain NIY06_10465 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_10465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_10465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_10480 PF00106 short chain dehydrogenase NIY06_10490 PF07690 Major Facilitator Superfamily NIY06_10500 PF01425 Amidase NIY06_10505 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY06_10520 PF00355 Rieske [2Fe-2S] domain NIY06_10520 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY06_10535 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_10535 PF00175 Oxidoreductase NAD-binding domain NIY06_10540 PF01613 Flavin reductase like domain NIY06_10545 PF12833 Helix-turn-helix domain NIY06_10545 PF02311 AraC-like ligand binding domain NIY06_10550 PF07833 Copper amine oxidase N-terminal domain NIY06_10550 PF02728 Copper amine oxidase, N3 domain NIY06_10550 PF01179 Copper amine oxidase, enzyme domain NIY06_10550 PF02727 Copper amine oxidase, N2 domain NIY06_10560 PF00171 Aldehyde dehydrogenase family NIY06_10565 PF01804 Penicillin amidase NIY06_10570 PF12146 Serine aminopeptidase, S33 NIY06_10575 PF00108 Thiolase, N-terminal domain NIY06_10575 PF02803 Thiolase, C-terminal domain NIY06_10580 PF01144 Coenzyme A transferase NIY06_10585 PF01144 Coenzyme A transferase NIY06_10590 PF00775 Dioxygenase NIY06_10590 PF04444 Catechol dioxygenase N terminus NIY06_10595 PF02426 Muconolactone delta-isomerase NIY06_10600 PF13378 Enolase C-terminal domain-like NIY06_10600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NIY06_10605 PF03466 LysR substrate binding domain NIY06_10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_10615 PF07729 FCD domain NIY06_10615 PF00392 Bacterial regulatory proteins, gntR family NIY06_10620 PF00920 Dehydratase family NIY06_10625 PF07690 Major Facilitator Superfamily NIY06_10635 PF00171 Aldehyde dehydrogenase family NIY06_10655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_10655 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_10655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_10665 PF02954 Bacterial regulatory protein, Fis family NIY06_10665 PF06506 Propionate catabolism activator NIY06_10665 PF00158 Sigma-54 interaction domain NIY06_10670 PF00501 AMP-binding enzyme NIY06_10670 PF13193 AMP-binding enzyme C-terminal domain NIY06_10675 PF04341 Protein of unknown function, DUF485 NIY06_10680 PF00474 Sodium:solute symporter family NIY06_10685 PF00107 Zinc-binding dehydrogenase NIY06_10685 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_10690 PF00171 Aldehyde dehydrogenase family NIY06_10700 PF00561 alpha/beta hydrolase fold NIY06_10705 PF00199 Catalase NIY06_10705 PF06628 Catalase-related immune-responsive NIY06_10720 PF07859 alpha/beta hydrolase fold NIY06_10725 PF01047 MarR family NIY06_10730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NIY06_10730 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_10735 PF00106 short chain dehydrogenase NIY06_10740 PF01872 RibD C-terminal domain NIY06_10745 PF00376 MerR family regulatory protein NIY06_10745 PF09278 MerR, DNA binding NIY06_10755 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_10765 PF12706 Beta-lactamase superfamily domain NIY06_10770 PF08359 YsiA-like protein, C-terminal region NIY06_10770 PF00440 Bacterial regulatory proteins, tetR family NIY06_10780 PF00857 Isochorismatase family NIY06_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_10785 PF03466 LysR substrate binding domain NIY06_10790 PF07995 Glucose / Sorbosone dehydrogenase NIY06_10795 PF00999 Sodium/hydrogen exchanger family NIY06_10795 PF02254 TrkA-N domain NIY06_10805 PF01546 Peptidase family M20/M25/M40 NIY06_10805 PF07687 Peptidase dimerisation domain NIY06_10815 PF08479 POTRA domain, ShlB-type NIY06_10815 PF17287 POTRA domain NIY06_10815 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NIY06_10820 PF13332 Hemagglutinin repeat NIY06_10820 PF04829 Pre-toxin domain with VENN motif NIY06_10820 PF05860 haemagglutination activity domain NIY06_10820 PF13018 Extended Signal Peptide of Type V secretion system NIY06_10835 PF07690 Major Facilitator Superfamily NIY06_10840 PF04909 Amidohydrolase NIY06_10850 PF00392 Bacterial regulatory proteins, gntR family NIY06_10850 PF07702 UTRA domain NIY06_10855 PF08450 SMP-30/Gluconolactonase/LRE-like region NIY06_10865 PF03466 LysR substrate binding domain NIY06_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_10885 PF07690 Major Facilitator Superfamily NIY06_10890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NIY06_10890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NIY06_10890 PF01842 ACT domain NIY06_10895 PF03737 Aldolase/RraA NIY06_10925 PF00529 HlyD membrane-fusion protein of T1SS NIY06_10925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_10940 PF00171 Aldehyde dehydrogenase family NIY06_10945 PF00920 Dehydratase family NIY06_10955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_10955 PF03466 LysR substrate binding domain NIY06_10960 PF01370 NAD dependent epimerase/dehydratase family NIY06_10965 PF07690 Major Facilitator Superfamily NIY06_10970 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY06_10970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY06_10975 PF12833 Helix-turn-helix domain NIY06_10975 PF06719 AraC-type transcriptional regulator N-terminus NIY06_10990 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_10990 PF00107 Zinc-binding dehydrogenase NIY06_11000 PF01032 FecCD transport family NIY06_11005 PF00005 ABC transporter NIY06_11025 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIY06_11025 PF14572 Phosphoribosyl synthetase-associated domain NIY06_11030 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NIY06_11105 PF00196 Bacterial regulatory proteins, luxR family NIY06_11110 PF01425 Amidase NIY06_11115 PF13533 Biotin-lipoyl like NIY06_11120 PF07690 Major Facilitator Superfamily NIY06_11145 PF01975 Survival protein SurE NIY06_11155 PF13291 ACT domain NIY06_11155 PF04607 Region found in RelA / SpoT proteins NIY06_11155 PF02824 TGS domain NIY06_11205 PF12146 Serine aminopeptidase, S33 NIY06_11210 PF12833 Helix-turn-helix domain NIY06_11210 PF02311 AraC-like ligand binding domain NIY06_11225 PF00486 Transcriptional regulatory protein, C terminal NIY06_11225 PF00072 Response regulator receiver domain NIY06_11230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_11230 PF00529 HlyD membrane-fusion protein of T1SS NIY06_11235 PF00873 AcrB/AcrD/AcrF family NIY06_11240 PF02321 Outer membrane efflux protein NIY06_11245 PF12146 Serine aminopeptidase, S33 NIY06_11250 PF00743 Flavin-binding monooxygenase-like NIY06_11255 PF01593 Flavin containing amine oxidoreductase NIY06_11270 PF01266 FAD dependent oxidoreductase NIY06_11290 PF16970 Type-1 fimbrial protein, A NIY06_11300 PF02753 Pili assembly chaperone PapD, C-terminal domain NIY06_11300 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIY06_11305 PF13953 PapC C-terminal domain NIY06_11305 PF13954 PapC N-terminal domain NIY06_11305 PF00577 Outer membrane usher protein NIY06_11310 PF00419 Fimbrial protein NIY06_11320 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_11320 PF00107 Zinc-binding dehydrogenase NIY06_11330 PF00199 Catalase NIY06_11345 PF13091 PLD-like domain NIY06_11360 PF01244 Membrane dipeptidase (Peptidase family M19) NIY06_11365 PF04055 Radical SAM superfamily NIY06_11365 PF13186 Iron-sulfur cluster-binding domain NIY06_11370 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NIY06_11375 PF03070 TENA/THI-4/PQQC family NIY06_11380 PF12706 Beta-lactamase superfamily domain NIY06_11385 PF08042 PqqA family NIY06_11390 PF02503 Polyphosphate kinase middle domain NIY06_11390 PF13090 Polyphosphate kinase C-terminal domain 2 NIY06_11390 PF17941 Polyphosphate kinase C-terminal domain 1 NIY06_11390 PF13089 Polyphosphate kinase N-terminal domain NIY06_11395 PF00149 Calcineurin-like phosphoesterase NIY06_11405 PF00550 Phosphopantetheine attachment site NIY06_11405 PF00857 Isochorismatase family NIY06_11410 PF00106 short chain dehydrogenase NIY06_11415 PF03459 TOBE domain NIY06_11415 PF00005 ABC transporter NIY06_11420 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_11430 PF03459 TOBE domain NIY06_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_11435 PF00355 Rieske [2Fe-2S] domain NIY06_11435 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY06_11440 PF00866 Ring hydroxylating beta subunit NIY06_11445 PF00970 Oxidoreductase FAD-binding domain NIY06_11445 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_11445 PF00175 Oxidoreductase NAD-binding domain NIY06_11450 PF14525 AraC-binding-like domain NIY06_11450 PF12833 Helix-turn-helix domain NIY06_11460 PF01613 Flavin reductase like domain NIY06_11475 PF01738 Dienelactone hydrolase family NIY06_11480 PF07690 Major Facilitator Superfamily NIY06_11485 PF12833 Helix-turn-helix domain NIY06_11485 PF06719 AraC-type transcriptional regulator N-terminus NIY06_11510 PF03466 LysR substrate binding domain NIY06_11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_11515 PF01144 Coenzyme A transferase NIY06_11520 PF01144 Coenzyme A transferase NIY06_11525 PF02667 Short chain fatty acid transporter NIY06_11530 PF02803 Thiolase, C-terminal domain NIY06_11530 PF00108 Thiolase, N-terminal domain NIY06_11535 PF03466 LysR substrate binding domain NIY06_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_11540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_11540 PF03466 LysR substrate binding domain NIY06_11555 PF10415 Fumarase C C-terminus NIY06_11555 PF00206 Lyase NIY06_11560 PF00593 TonB dependent receptor NIY06_11560 PF07715 TonB-dependent Receptor Plug Domain NIY06_11565 PF00083 Sugar (and other) transporter NIY06_11580 PF00005 ABC transporter NIY06_11585 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_11590 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIY06_11605 PF00392 Bacterial regulatory proteins, gntR family NIY06_11605 PF07702 UTRA domain NIY06_11615 PF02525 Flavodoxin-like fold NIY06_11620 PF01638 HxlR-like helix-turn-helix NIY06_11625 PF06445 GyrI-like small molecule binding domain NIY06_11625 PF12833 Helix-turn-helix domain NIY06_11640 PF01925 Sulfite exporter TauE/SafE NIY06_11655 PF04273 Putative phosphatase (DUF442) NIY06_11655 PF00753 Metallo-beta-lactamase superfamily NIY06_11660 PF00158 Sigma-54 interaction domain NIY06_11660 PF00072 Response regulator receiver domain NIY06_11660 PF02954 Bacterial regulatory protein, Fis family NIY06_11665 PF01062 Bestrophin, RFP-TM, chloride channel NIY06_11670 PF00107 Zinc-binding dehydrogenase NIY06_11670 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_11675 PF00106 short chain dehydrogenase NIY06_11680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NIY06_11680 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_11685 PF02817 e3 binding domain NIY06_11685 PF00364 Biotin-requiring enzyme NIY06_11685 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NIY06_11690 PF02779 Transketolase, pyrimidine binding domain NIY06_11690 PF02780 Transketolase, C-terminal domain NIY06_11695 PF00676 Dehydrogenase E1 component NIY06_11700 PF04055 Radical SAM superfamily NIY06_11715 PF00990 Diguanylate cyclase, GGDEF domain NIY06_11715 PF08448 PAS fold NIY06_11720 PF01264 Chorismate synthase NIY06_11725 PF05175 Methyltransferase small domain NIY06_11730 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_11740 PF17862 AAA+ lid domain NIY06_11740 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_11740 PF01434 Peptidase family M41 NIY06_11750 PF05166 YcgL domain NIY06_11770 PF00570 HRDC domain NIY06_11770 PF01612 3'-5' exonuclease NIY06_11775 PF02132 RecR protein NIY06_11775 PF13662 Toprim domain NIY06_11780 PF02575 YbaB/EbfC DNA-binding family NIY06_11790 PF01053 Cys/Met metabolism PLP-dependent enzyme NIY06_11795 PF00561 alpha/beta hydrolase fold NIY06_11800 PF08241 Methyltransferase domain NIY06_11830 PF01230 HIT domain NIY06_11865 PF00005 ABC transporter NIY06_11870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_11880 PF02684 Lipid-A-disaccharide synthetase NIY06_11885 PF07715 TonB-dependent Receptor Plug Domain NIY06_11885 PF00593 TonB dependent receptor NIY06_11905 PF01925 Sulfite exporter TauE/SafE NIY06_11910 PF00793 DAHP synthetase I family NIY06_11915 PF02654 Cobalamin-5-phosphate synthase NIY06_11930 PF02277 Phosphoribosyltransferase NIY06_11935 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NIY06_11945 PF13419 Haloacid dehalogenase-like hydrolase NIY06_11970 PF07715 TonB-dependent Receptor Plug Domain NIY06_11970 PF00593 TonB dependent receptor NIY06_11985 PF06276 Ferric iron reductase FhuF-like transporter NIY06_11985 PF04183 IucA / IucC family NIY06_11990 PF06276 Ferric iron reductase FhuF-like transporter NIY06_11990 PF04183 IucA / IucC family NIY06_11995 PF07690 Major Facilitator Superfamily NIY06_12000 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NIY06_12005 PF06276 Ferric iron reductase FhuF-like transporter NIY06_12005 PF04183 IucA / IucC family NIY06_12010 PF04073 Aminoacyl-tRNA editing domain NIY06_12020 PF03109 ABC1 family NIY06_12025 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_12025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_12025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_12030 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_12030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_12030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_12035 PF00487 Fatty acid desaturase NIY06_12040 PF12833 Helix-turn-helix domain NIY06_12040 PF12852 Cupin NIY06_12045 PF00639 PPIC-type PPIASE domain NIY06_12045 PF09312 SurA N-terminal domain NIY06_12050 PF00216 Bacterial DNA-binding protein NIY06_12065 PF02082 Transcriptional regulator NIY06_12070 PF00266 Aminotransferase class-V NIY06_12075 PF01592 NifU-like N terminal domain NIY06_12080 PF01521 Iron-sulphur cluster biosynthesis NIY06_12085 PF07743 HSCB C-terminal oligomerisation domain NIY06_12085 PF00226 DnaJ domain NIY06_12090 PF00012 Hsp70 protein NIY06_12095 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_12100 PF00211 Adenylate and Guanylate cyclase catalytic domain NIY06_12110 PF00271 Helicase conserved C-terminal domain NIY06_12110 PF00270 DEAD/DEAH box helicase NIY06_12110 PF17757 UvrB interaction domain NIY06_12110 PF02559 CarD-like/TRCF domain NIY06_12110 PF03461 TRCF domain NIY06_12140 PF03737 Aldolase/RraA NIY06_12145 PF13460 NAD(P)H-binding NIY06_12150 PF01649 Ribosomal protein S20 NIY06_12160 PF00459 Inositol monophosphatase family NIY06_12175 PF00005 ABC transporter NIY06_12175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NIY06_12180 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_12185 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_12190 PF01432 Peptidase family M3 NIY06_12210 PF07715 TonB-dependent Receptor Plug Domain NIY06_12210 PF00593 TonB dependent receptor NIY06_12220 PF01618 MotA/TolQ/ExbB proton channel family NIY06_12225 PF02472 Biopolymer transport protein ExbD/TolR NIY06_12230 PF02472 Biopolymer transport protein ExbD/TolR NIY06_12240 PF01274 Malate synthase NIY06_12245 PF03969 AFG1-like ATPase NIY06_12255 PF00743 Flavin-binding monooxygenase-like NIY06_12265 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NIY06_12275 PF00216 Bacterial DNA-binding protein NIY06_12280 PF00575 S1 RNA binding domain NIY06_12285 PF02224 Cytidylate kinase NIY06_12295 PF14437 MafB19-like deaminase NIY06_12305 PF03167 Uracil DNA glycosylase superfamily NIY06_12315 PF03934 Type II secretion system (T2SS), protein K NIY06_12320 PF07963 Prokaryotic N-terminal methylation motif NIY06_12320 PF11612 Type II secretion system (T2SS), protein J NIY06_12325 PF02501 Type II secretion system (T2SS), protein I NIY06_12325 PF07963 Prokaryotic N-terminal methylation motif NIY06_12340 PF01026 TatD related DNase NIY06_12350 PF09115 DNA polymerase III, delta subunit, C terminal NIY06_12355 PF02348 Cytidylyltransferase NIY06_12360 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NIY06_12365 PF00664 ABC transporter transmembrane region NIY06_12365 PF00005 ABC transporter NIY06_12375 PF01618 MotA/TolQ/ExbB proton channel family NIY06_12380 PF02195 ParB-like nuclease domain NIY06_12380 PF17762 HTH domain found in ParB protein NIY06_12385 PF13614 AAA domain NIY06_12390 PF02527 rRNA small subunit methyltransferase G NIY06_12395 PF00483 Nucleotidyl transferase NIY06_12400 PF01636 Phosphotransferase enzyme family NIY06_12405 PF04453 LPS transport system D NIY06_12405 PF03968 OstA-like protein NIY06_12410 PF00639 PPIC-type PPIASE domain NIY06_12410 PF09312 SurA N-terminal domain NIY06_12415 PF01116 Fructose-bisphosphate aldolase class-II NIY06_12425 PF00162 Phosphoglycerate kinase NIY06_12435 PF02545 Maf-like protein NIY06_12440 PF08007 Cupin superfamily protein NIY06_12465 PF00375 Sodium:dicarboxylate symporter family NIY06_12470 PF06912 Protein of unknown function (DUF1275) NIY06_12475 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NIY06_12480 PF00664 ABC transporter transmembrane region NIY06_12480 PF00005 ABC transporter NIY06_12490 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY06_12490 PF12833 Helix-turn-helix domain NIY06_12495 PF01597 Glycine cleavage H-protein NIY06_12500 PF02146 Sir2 family NIY06_12505 PF00474 Sodium:solute symporter family NIY06_12510 PF01037 Lrp/AsnC ligand binding domain NIY06_12515 PF14850 DNA-binding domain of Proline dehydrogenase NIY06_12515 PF01619 Proline dehydrogenase NIY06_12515 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NIY06_12515 PF00171 Aldehyde dehydrogenase family NIY06_12520 PF04229 GrpB protein NIY06_12525 PF05958 tRNA (Uracil-5-)-methyltransferase NIY06_12535 PF09992 Phosphodiester glycosidase NIY06_12545 PF04264 YceI-like domain NIY06_12555 PF02780 Transketolase, C-terminal domain NIY06_12555 PF00456 Transketolase, thiamine diphosphate binding domain NIY06_12555 PF02779 Transketolase, pyrimidine binding domain NIY06_12560 PF02773 S-adenosylmethionine synthetase, C-terminal domain NIY06_12560 PF00438 S-adenosylmethionine synthetase, N-terminal domain NIY06_12560 PF02772 S-adenosylmethionine synthetase, central domain NIY06_12580 PF00905 Penicillin binding protein transpeptidase domain NIY06_12595 PF02075 Crossover junction endodeoxyribonuclease RuvC NIY06_12600 PF03853 YjeF-related protein N-terminus NIY06_12600 PF01256 Carbohydrate kinase NIY06_12605 PF08331 Domain of unknown function (DUF1730) NIY06_12610 PF06968 Biotin and Thiamin Synthesis associated domain NIY06_12610 PF04055 Radical SAM superfamily NIY06_12625 PF16970 Type-1 fimbrial protein, A NIY06_12630 PF02753 Pili assembly chaperone PapD, C-terminal domain NIY06_12630 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NIY06_12635 PF13954 PapC N-terminal domain NIY06_12635 PF00577 Outer membrane usher protein NIY06_12635 PF13953 PapC C-terminal domain NIY06_12655 PF00892 EamA-like transporter family NIY06_12665 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY06_12675 PF03466 LysR substrate binding domain NIY06_12675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_12695 PF00440 Bacterial regulatory proteins, tetR family NIY06_12705 PF01709 Transcriptional regulator NIY06_12710 PF01037 Lrp/AsnC ligand binding domain NIY06_12725 PF00005 ABC transporter NIY06_12730 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_12735 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_12750 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY06_12750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_12760 PF00296 Luciferase-like monooxygenase NIY06_12765 PF03180 NLPA lipoprotein NIY06_12770 PF03180 NLPA lipoprotein NIY06_12775 PF09383 NIL domain NIY06_12775 PF00005 ABC transporter NIY06_12780 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_12785 PF01926 50S ribosome-binding GTPase NIY06_12785 PF06071 Protein of unknown function (DUF933) NIY06_12810 PF03591 AzlC protein NIY06_12815 PF05437 Branched-chain amino acid transport protein (AzlD) NIY06_12825 PF02222 ATP-grasp domain NIY06_12830 PF08335 GlnD PII-uridylyltransferase NIY06_12830 PF01966 HD domain NIY06_12830 PF01909 Nucleotidyltransferase domain NIY06_12835 PF00155 Aminotransferase class I and II NIY06_12845 PF12833 Helix-turn-helix domain NIY06_12845 PF12852 Cupin NIY06_12850 PF00255 Glutathione peroxidase NIY06_12855 PF01641 SelR domain NIY06_12860 PF00155 Aminotransferase class I and II NIY06_12865 PF00375 Sodium:dicarboxylate symporter family NIY06_12870 PF17763 Glutaminase/Asparaginase C-terminal domain NIY06_12870 PF00710 Asparaginase, N-terminal NIY06_12875 PF01336 OB-fold nucleic acid binding domain NIY06_12875 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NIY06_12875 PF14579 Helix-hairpin-helix motif NIY06_12875 PF02811 PHP domain NIY06_12875 PF07733 Bacterial DNA polymerase III alpha NTPase domain NIY06_12880 PF00588 SpoU rRNA Methylase family NIY06_12885 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_12900 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_12900 PF13192 Thioredoxin domain NIY06_12915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_12915 PF03466 LysR substrate binding domain NIY06_12920 PF01758 Sodium Bile acid symporter family NIY06_12925 PF01022 Bacterial regulatory protein, arsR family NIY06_12930 PF03960 ArsC family NIY06_12940 PF01979 Amidohydrolase family NIY06_12940 PF13382 Adenine deaminase C-terminal domain NIY06_12950 PF03466 LysR substrate binding domain NIY06_12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_12960 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY06_12965 PF01177 Asp/Glu/Hydantoin racemase NIY06_12970 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NIY06_12975 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_12980 PF00005 ABC transporter NIY06_12985 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NIY06_12995 PF00083 Sugar (and other) transporter NIY06_13000 PF00296 Luciferase-like monooxygenase NIY06_13005 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY06_13005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_13005 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_13015 PF01654 Cytochrome bd terminal oxidase subunit I NIY06_13020 PF02322 Cytochrome bd terminal oxidase subunit II NIY06_13030 PF00392 Bacterial regulatory proteins, gntR family NIY06_13030 PF00155 Aminotransferase class I and II NIY06_13035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13035 PF03466 LysR substrate binding domain NIY06_13050 PF00698 Acyl transferase domain NIY06_13055 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NIY06_13065 PF01039 Carboxyl transferase domain NIY06_13070 PF06857 Malonate decarboxylase delta subunit (MdcD) NIY06_13075 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NIY06_13080 PF16957 Malonate decarboxylase, alpha subunit, transporter NIY06_13085 PF07690 Major Facilitator Superfamily NIY06_13100 PF00392 Bacterial regulatory proteins, gntR family NIY06_13100 PF00155 Aminotransferase class I and II NIY06_13105 PF04172 LrgB-like family NIY06_13110 PF03788 LrgA family NIY06_13115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13115 PF03466 LysR substrate binding domain NIY06_13120 PF14834 Glutathione S-transferase, C-terminal domain NIY06_13120 PF02798 Glutathione S-transferase, N-terminal domain NIY06_13125 PF02798 Glutathione S-transferase, N-terminal domain NIY06_13130 PF03466 LysR substrate binding domain NIY06_13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13140 PF00581 Rhodanese-like domain NIY06_13145 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_13155 PF00266 Aminotransferase class-V NIY06_13165 PF01810 LysE type translocator NIY06_13170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13170 PF03466 LysR substrate binding domain NIY06_13180 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY06_13185 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY06_13190 PF00005 ABC transporter NIY06_13195 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_13200 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_13215 PF00072 Response regulator receiver domain NIY06_13220 PF00512 His Kinase A (phospho-acceptor) domain NIY06_13220 PF00072 Response regulator receiver domain NIY06_13220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_13220 PF09308 LuxQ, periplasmic NIY06_13230 PF13404 AsnC-type helix-turn-helix domain NIY06_13230 PF01037 Lrp/AsnC ligand binding domain NIY06_13240 PF00717 Peptidase S24-like NIY06_13265 PF00199 Catalase NIY06_13265 PF06628 Catalase-related immune-responsive NIY06_13265 PF18011 C-terminal domain found in long catalases NIY06_13275 PF02464 Competence-damaged protein NIY06_13275 PF00994 Probable molybdopterin binding domain NIY06_13275 PF18146 Damage-inducible protein CinA KH domain NIY06_13310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13310 PF03466 LysR substrate binding domain NIY06_13335 PF13193 AMP-binding enzyme C-terminal domain NIY06_13335 PF00501 AMP-binding enzyme NIY06_13340 PF00440 Bacterial regulatory proteins, tetR family NIY06_13345 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_13345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_13345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_13350 PF01039 Carboxyl transferase domain NIY06_13355 PF00378 Enoyl-CoA hydratase/isomerase NIY06_13360 PF18140 Propionyl-coenzyme A carboxylase BT domain NIY06_13360 PF02785 Biotin carboxylase C-terminal domain NIY06_13360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY06_13360 PF00364 Biotin-requiring enzyme NIY06_13360 PF00289 Biotin carboxylase, N-terminal domain NIY06_13365 PF00682 HMGL-like NIY06_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13370 PF03466 LysR substrate binding domain NIY06_13385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_13385 PF12806 Acetyl-CoA dehydrogenase C-terminal like NIY06_13385 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_13385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_13395 PF07690 Major Facilitator Superfamily NIY06_13405 PF01144 Coenzyme A transferase NIY06_13410 PF01144 Coenzyme A transferase NIY06_13415 PF07690 Major Facilitator Superfamily NIY06_13420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_13420 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_13420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_13425 PF00378 Enoyl-CoA hydratase/isomerase NIY06_13435 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIY06_13435 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY06_13435 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY06_13440 PF00108 Thiolase, N-terminal domain NIY06_13440 PF02803 Thiolase, C-terminal domain NIY06_13445 PF09339 IclR helix-turn-helix domain NIY06_13450 PF07690 Major Facilitator Superfamily NIY06_13455 PF03060 Nitronate monooxygenase NIY06_13460 PF00378 Enoyl-CoA hydratase/isomerase NIY06_13465 PF09339 IclR helix-turn-helix domain NIY06_13470 PF02515 CoA-transferase family III NIY06_13475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_13475 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_13475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_13480 PF07690 Major Facilitator Superfamily NIY06_13485 PF13419 Haloacid dehalogenase-like hydrolase NIY06_13490 PF00266 Aminotransferase class-V NIY06_13495 PF01266 FAD dependent oxidoreductase NIY06_13500 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_13505 PF08402 TOBE domain NIY06_13505 PF00005 ABC transporter NIY06_13515 PF07702 UTRA domain NIY06_13515 PF00392 Bacterial regulatory proteins, gntR family NIY06_13520 PF01494 FAD binding domain NIY06_13525 PF09339 IclR helix-turn-helix domain NIY06_13525 PF01614 Bacterial transcriptional regulator NIY06_13530 PF02525 Flavodoxin-like fold NIY06_13535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13535 PF03466 LysR substrate binding domain NIY06_13540 PF02627 Carboxymuconolactone decarboxylase family NIY06_13545 PF00171 Aldehyde dehydrogenase family NIY06_13555 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NIY06_13565 PF00171 Aldehyde dehydrogenase family NIY06_13570 PF00296 Luciferase-like monooxygenase NIY06_13575 PF01613 Flavin reductase like domain NIY06_13580 PF12697 Alpha/beta hydrolase family NIY06_13600 PF01292 Prokaryotic cytochrome b561 NIY06_13605 PF00199 Catalase NIY06_13640 PF03061 Thioesterase superfamily NIY06_13645 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_13650 PF07848 PaaX-like protein NIY06_13650 PF08223 PaaX-like protein C-terminal domain NIY06_13655 PF00501 AMP-binding enzyme NIY06_13655 PF14535 AMP-binding enzyme C-terminal domain NIY06_13660 PF02803 Thiolase, C-terminal domain NIY06_13660 PF00108 Thiolase, N-terminal domain NIY06_13665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY06_13665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY06_13665 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NIY06_13670 PF00378 Enoyl-CoA hydratase/isomerase NIY06_13675 PF00378 Enoyl-CoA hydratase/isomerase NIY06_13680 PF00175 Oxidoreductase NAD-binding domain NIY06_13680 PF00970 Oxidoreductase FAD-binding domain NIY06_13680 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_13685 PF01883 Iron-sulfur cluster assembly protein NIY06_13690 PF05138 Phenylacetic acid catabolic protein NIY06_13695 PF06243 Phenylacetic acid degradation B NIY06_13700 PF05138 Phenylacetic acid catabolic protein NIY06_13705 PF01575 MaoC like domain NIY06_13705 PF00171 Aldehyde dehydrogenase family NIY06_13710 PF03315 Serine dehydratase beta chain NIY06_13710 PF03313 Serine dehydratase alpha chain NIY06_13715 PF13520 Amino acid permease NIY06_13720 PF00171 Aldehyde dehydrogenase family NIY06_13725 PF00083 Sugar (and other) transporter NIY06_13735 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_13735 PF04324 BFD-like [2Fe-2S] binding domain NIY06_13745 PF01266 FAD dependent oxidoreductase NIY06_13750 PF05544 Proline racemase NIY06_13755 PF00392 Bacterial regulatory proteins, gntR family NIY06_13765 PF00701 Dihydrodipicolinate synthetase family NIY06_13775 PF00376 MerR family regulatory protein NIY06_13775 PF09278 MerR, DNA binding NIY06_13790 PF02677 Epoxyqueuosine reductase QueH NIY06_13805 PF07690 Major Facilitator Superfamily NIY06_13810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIY06_13820 PF03466 LysR substrate binding domain NIY06_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_13840 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NIY06_13845 PF06812 ImpA, N-terminal, type VI secretion system NIY06_13850 PF07724 AAA domain (Cdc48 subfamily) NIY06_13850 PF17871 AAA lid domain NIY06_13850 PF10431 C-terminal, D2-small domain, of ClpB protein NIY06_13850 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_13865 PF00691 OmpA family NIY06_13865 PF01389 OmpA-like transmembrane domain NIY06_13875 PF06744 Type VI secretion protein IcmF C-terminal NIY06_13875 PF06761 Intracellular multiplication and human macrophage-killing NIY06_13875 PF14331 ImcF-related N-terminal domain NIY06_13890 PF05947 Type VI secretion system, TssF NIY06_13905 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NIY06_13930 PF00005 ABC transporter NIY06_13935 PF00497 Bacterial extracellular solute-binding proteins, family 3 NIY06_13940 PF01425 Amidase NIY06_13945 PF01402 Ribbon-helix-helix protein, copG family NIY06_13945 PF08753 NikR C terminal nickel binding domain NIY06_13965 PF02525 Flavodoxin-like fold NIY06_13970 PF00289 Biotin carboxylase, N-terminal domain NIY06_13970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY06_13970 PF02785 Biotin carboxylase C-terminal domain NIY06_13985 PF13823 Alcohol dehydrogenase GroES-associated NIY06_13985 PF00107 Zinc-binding dehydrogenase NIY06_13985 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_13995 PF00440 Bacterial regulatory proteins, tetR family NIY06_14015 PF00654 Voltage gated chloride channel NIY06_14020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NIY06_14020 PF00289 Biotin carboxylase, N-terminal domain NIY06_14020 PF02785 Biotin carboxylase C-terminal domain NIY06_14020 PF00364 Biotin-requiring enzyme NIY06_14030 PF07286 Protein of unknown function (DUF1445) NIY06_14035 PF03746 LamB/YcsF family NIY06_14040 PF01566 Natural resistance-associated macrophage protein NIY06_14045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_14045 PF03466 LysR substrate binding domain NIY06_14060 PF05593 RHS Repeat NIY06_14060 PF03527 RHS protein NIY06_14065 PF13296 Putative type VI secretion system Rhs element Vgr NIY06_14065 PF04717 Type VI secretion system, phage-baseplate injector NIY06_14065 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NIY06_14075 PF13419 Haloacid dehalogenase-like hydrolase NIY06_14095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY06_14095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY06_14115 PF07690 Major Facilitator Superfamily NIY06_14130 PF03279 Bacterial lipid A biosynthesis acyltransferase NIY06_14135 PF00563 EAL domain NIY06_14135 PF03707 Bacterial signalling protein N terminal repeat NIY06_14135 PF00990 Diguanylate cyclase, GGDEF domain NIY06_14140 PF00892 EamA-like transporter family NIY06_14145 PF01037 Lrp/AsnC ligand binding domain NIY06_14150 PF05188 MutS domain II NIY06_14150 PF05192 MutS domain III NIY06_14150 PF05190 MutS family domain IV NIY06_14150 PF00488 MutS domain V NIY06_14150 PF01624 MutS domain I NIY06_14160 PF11953 Domain of unknown function (DUF3470) NIY06_14160 PF00037 4Fe-4S binding domain NIY06_14170 PF01596 O-methyltransferase NIY06_14180 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_14185 PF01205 Uncharacterized protein family UPF0029 NIY06_14195 PF00664 ABC transporter transmembrane region NIY06_14195 PF03412 Peptidase C39 family NIY06_14195 PF00005 ABC transporter NIY06_14200 PF02321 Outer membrane efflux protein NIY06_14205 PF12399 Branched-chain amino acid ATP-binding cassette transporter NIY06_14205 PF00005 ABC transporter NIY06_14210 PF03968 OstA-like protein NIY06_14225 PF01380 SIS domain NIY06_14225 PF00571 CBS domain NIY06_14230 PF01406 tRNA synthetases class I (C) catalytic domain NIY06_14230 PF09190 DALR domain NIY06_14255 PF01638 HxlR-like helix-turn-helix NIY06_14260 PF07690 Major Facilitator Superfamily NIY06_14285 PF03807 NADP oxidoreductase coenzyme F420-dependent NIY06_14285 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIY06_14295 PF00313 'Cold-shock' DNA-binding domain NIY06_14300 PF01810 LysE type translocator NIY06_14330 PF02601 Exonuclease VII, large subunit NIY06_14330 PF13742 OB-fold nucleic acid binding domain NIY06_14365 PF09278 MerR, DNA binding NIY06_14365 PF00376 MerR family regulatory protein NIY06_14370 PF00403 Heavy-metal-associated domain NIY06_14375 PF00403 Heavy-metal-associated domain NIY06_14380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_14380 PF03466 LysR substrate binding domain NIY06_14390 PF00355 Rieske [2Fe-2S] domain NIY06_14390 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY06_14395 PF00866 Ring hydroxylating beta subunit NIY06_14400 PF00970 Oxidoreductase FAD-binding domain NIY06_14400 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_14400 PF00175 Oxidoreductase NAD-binding domain NIY06_14405 PF00106 short chain dehydrogenase NIY06_14410 PF03594 Benzoate membrane transport protein NIY06_14415 PF07690 Major Facilitator Superfamily NIY06_14425 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NIY06_14425 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NIY06_14430 PF11898 Domain of unknown function (DUF3418) NIY06_14430 PF04408 Helicase associated domain (HA2) NIY06_14430 PF00270 DEAD/DEAH box helicase NIY06_14430 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NIY06_14430 PF00271 Helicase conserved C-terminal domain NIY06_14435 PF00578 AhpC/TSA family NIY06_14435 PF10417 C-terminal domain of 1-Cys peroxiredoxin NIY06_14455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_14455 PF13192 Thioredoxin domain NIY06_14465 PF02798 Glutathione S-transferase, N-terminal domain NIY06_14465 PF00043 Glutathione S-transferase, C-terminal domain NIY06_14475 PF02390 Putative methyltransferase NIY06_14480 PF00043 Glutathione S-transferase, C-terminal domain NIY06_14480 PF13417 Glutathione S-transferase, N-terminal domain NIY06_14490 PF13488 Glycine zipper NIY06_14490 PF00691 OmpA family NIY06_14495 PF01979 Amidohydrolase family NIY06_14500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NIY06_14500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NIY06_14510 PF01170 Putative RNA methylase family UPF0020 NIY06_14510 PF02926 THUMP domain NIY06_14510 PF10672 S-adenosylmethionine-dependent methyltransferase NIY06_14525 PF07724 AAA domain (Cdc48 subfamily) NIY06_14525 PF00004 ATPase family associated with various cellular activities (AAA) NIY06_14525 PF17871 AAA lid domain NIY06_14525 PF02861 Clp amino terminal domain, pathogenicity island component NIY06_14525 PF10431 C-terminal, D2-small domain, of ClpB protein NIY06_14540 PF02566 OsmC-like protein NIY06_14550 PF00027 Cyclic nucleotide-binding domain NIY06_14550 PF13545 Crp-like helix-turn-helix domain NIY06_14560 PF00248 Aldo/keto reductase family NIY06_14575 PF00709 Adenylosuccinate synthetase NIY06_14580 PF13393 Histidyl-tRNA synthetase NIY06_14585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NIY06_14585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NIY06_14590 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIY06_14590 PF01411 tRNA synthetases class II (A) NIY06_14590 PF02272 DHHA1 domain NIY06_14595 PF00696 Amino acid kinase family NIY06_14595 PF01842 ACT domain NIY06_14595 PF13840 ACT domain NIY06_14600 PF02599 Global regulator protein family NIY06_14605 PF01351 Ribonuclease HII NIY06_14615 PF01292 Prokaryotic cytochrome b561 NIY06_14620 PF00962 Adenosine/AMP deaminase NIY06_14625 PF00860 Permease family NIY06_14635 PF00743 Flavin-binding monooxygenase-like NIY06_14640 PF00106 short chain dehydrogenase NIY06_14650 PF02678 Pirin NIY06_14650 PF17954 Quercetinase C-terminal cupin domain NIY06_14655 PF17932 Tetracyclin repressor-like, C-terminal domain NIY06_14655 PF00440 Bacterial regulatory proteins, tetR family NIY06_14670 PF13610 DDE domain NIY06_14790 PF07007 Lysozyme inhibitor LprI NIY06_14835 PF01695 IstB-like ATP binding protein NIY06_14845 PF00145 C-5 cytosine-specific DNA methylase NIY06_14890 PF01381 Helix-turn-helix NIY06_14890 PF00717 Peptidase S24-like NIY06_14925 PF00929 Exonuclease NIY06_15000 PF07690 Major Facilitator Superfamily NIY06_15005 PF13533 Biotin-lipoyl like NIY06_15010 PF03061 Thioesterase superfamily NIY06_15015 PF00490 Delta-aminolevulinic acid dehydratase NIY06_15020 PF01266 FAD dependent oxidoreductase NIY06_15025 PF08338 Domain of unknown function (DUF1731) NIY06_15025 PF01370 NAD dependent epimerase/dehydratase family NIY06_15045 PF00149 Calcineurin-like phosphoesterase NIY06_15045 PF12320 Type 5 capsule protein repressor C-terminal domain NIY06_15055 PF01168 Alanine racemase, N-terminal domain NIY06_15060 PF00437 Type II/IV secretion system protein NIY06_15065 PF00437 Type II/IV secretion system protein NIY06_15070 PF01475 Ferric uptake regulator family NIY06_15075 PF04355 SmpA / OmlA family NIY06_15080 PF03658 RnfH family Ubiquitin NIY06_15090 PF01814 Hemerythrin HHE cation binding domain NIY06_15095 PF13230 Glutamine amidotransferases class-II NIY06_15105 PF00696 Amino acid kinase family NIY06_15110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY06_15110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY06_15110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY06_15110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY06_15115 PF00692 dUTPase NIY06_15120 PF00580 UvrD/REP helicase N-terminal domain NIY06_15120 PF13361 UvrD-like helicase C-terminal domain NIY06_15125 PF13488 Glycine zipper NIY06_15125 PF00691 OmpA family NIY06_15130 PF01553 Acyltransferase NIY06_15140 PF03775 Septum formation inhibitor MinC, C-terminal domain NIY06_15145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NIY06_15150 PF03776 Septum formation topological specificity factor MinE NIY06_15165 PF01810 LysE type translocator NIY06_15170 PF17854 FtsK alpha domain NIY06_15170 PF09397 Ftsk gamma domain NIY06_15170 PF01580 FtsK/SpoIIIE family NIY06_15170 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NIY06_15175 PF07992 Pyridine nucleotide-disulphide oxidoreductase NIY06_15180 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NIY06_15185 PF04377 Arginine-tRNA-protein transferase, C terminus NIY06_15185 PF04376 Arginine-tRNA-protein transferase, N terminus NIY06_15190 PF00583 Acetyltransferase (GNAT) family NIY06_15205 PF03143 Elongation factor Tu C-terminal domain NIY06_15205 PF03144 Elongation factor Tu domain 2 NIY06_15205 PF00009 Elongation factor Tu GTP binding domain NIY06_15210 PF03764 Elongation factor G, domain IV NIY06_15210 PF14492 Elongation Factor G, domain II NIY06_15210 PF00679 Elongation factor G C-terminus NIY06_15210 PF00009 Elongation factor Tu GTP binding domain NIY06_15210 PF03144 Elongation factor Tu domain 2 NIY06_15215 PF00177 Ribosomal protein S7p/S5e NIY06_15220 PF00164 Ribosomal protein S12/S23 NIY06_15230 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_15230 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_15235 PF03653 Uncharacterised protein family (UPF0093) NIY06_15240 PF02678 Pirin NIY06_15240 PF05726 Pirin C-terminal cupin domain NIY06_15250 PF00795 Carbon-nitrogen hydrolase NIY06_15250 PF02540 NAD synthase NIY06_15265 PF00970 Oxidoreductase FAD-binding domain NIY06_15265 PF00111 2Fe-2S iron-sulfur cluster binding domain NIY06_15265 PF00175 Oxidoreductase NAD-binding domain NIY06_15270 PF00171 Aldehyde dehydrogenase family NIY06_15275 PF00355 Rieske [2Fe-2S] domain NIY06_15275 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NIY06_15280 PF07859 alpha/beta hydrolase fold NIY06_15285 PF02028 BCCT, betaine/carnitine/choline family transporter NIY06_15290 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY06_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_15295 PF03466 LysR substrate binding domain NIY06_15315 PF00037 4Fe-4S binding domain NIY06_15320 PF01467 Cytidylyltransferase-like NIY06_15325 PF01668 SmpB protein NIY06_15330 PF03358 NADPH-dependent FMN reductase NIY06_15335 PF02578 Multi-copper polyphenol oxidoreductase laccase NIY06_15340 PF00849 RNA pseudouridylate synthase NIY06_15340 PF01479 S4 domain NIY06_15345 PF13525 Outer membrane lipoprotein NIY06_15350 PF10410 DnaB-helicase binding domain of primase NIY06_15350 PF08278 DNA primase DnaG DnaB-binding NIY06_15350 PF08275 DNA primase catalytic core, N-terminal domain NIY06_15350 PF01807 CHC2 zinc finger NIY06_15355 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NIY06_15355 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NIY06_15355 PF01488 Shikimate / quinate 5-dehydrogenase NIY06_15365 PF03550 Outer membrane lipoprotein LolB NIY06_15370 PF08544 GHMP kinases C terminal NIY06_15370 PF00288 GHMP kinases N terminal domain NIY06_15395 PF14572 Phosphoribosyl synthetase-associated domain NIY06_15395 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NIY06_15400 PF01386 Ribosomal L25p family NIY06_15405 PF01195 Peptidyl-tRNA hydrolase NIY06_15410 PF02261 Aspartate decarboxylase NIY06_15425 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NIY06_15435 PF03070 TENA/THI-4/PQQC family NIY06_15435 PF02581 Thiamine monophosphate synthase NIY06_15435 PF08543 Phosphomethylpyrimidine kinase NIY06_15440 PF04972 BON domain NIY06_15440 PF01476 LysM domain NIY06_15445 PF00550 Phosphopantetheine attachment site NIY06_15455 PF00698 Acyl transferase domain NIY06_15460 PF01783 Ribosomal L32p protein family NIY06_15465 PF02620 Large ribosomal RNA subunit accumulation protein YceD NIY06_15470 PF04315 Elongation factor P hydroxylase NIY06_15475 PF01300 Telomere recombination NIY06_15480 PF02616 Segregation and condensation protein ScpA NIY06_15485 PF04079 Segregation and condensation complex subunit ScpB NIY06_15490 PF00849 RNA pseudouridylate synthase NIY06_15490 PF01479 S4 domain NIY06_15505 PF00155 Aminotransferase class I and II NIY06_15510 PF04055 Radical SAM superfamily NIY06_15510 PF00202 Aminotransferase class-III NIY06_15510 PF06968 Biotin and Thiamin Synthesis associated domain NIY06_15515 PF12697 Alpha/beta hydrolase family NIY06_15515 PF08241 Methyltransferase domain NIY06_15520 PF02358 Trehalose-phosphatase NIY06_15525 PF00982 Glycosyltransferase family 20 NIY06_15530 PF07690 Major Facilitator Superfamily NIY06_15535 PF00210 Ferritin-like domain NIY06_15540 PF00533 BRCA1 C Terminus (BRCT) domain NIY06_15540 PF01653 NAD-dependent DNA ligase adenylation domain NIY06_15540 PF03120 NAD-dependent DNA ligase OB-fold domain NIY06_15540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NIY06_15540 PF12826 Helix-hairpin-helix motif NIY06_15550 PF06470 SMC proteins Flexible Hinge Domain NIY06_15550 PF02463 RecF/RecN/SMC N terminal domain NIY06_15560 PF01925 Sulfite exporter TauE/SafE NIY06_15570 PF03309 Type III pantothenate kinase NIY06_15575 PF02978 Signal peptide binding domain NIY06_15575 PF02881 SRP54-type protein, helical bundle domain NIY06_15575 PF00448 SRP54-type protein, GTPase domain NIY06_15585 PF01207 Dihydrouridine synthase (Dus) NIY06_15625 PF00692 dUTPase NIY06_15640 PF01048 Phosphorylase superfamily NIY06_15645 PF10609 NUBPL iron-transfer P-loop NTPase NIY06_15655 PF09334 tRNA synthetases class I (M) NIY06_15655 PF01588 Putative tRNA binding domain NIY06_15680 PF13533 Biotin-lipoyl like NIY06_15685 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_15700 PF05552 Conserved TM helix NIY06_15715 PF00175 Oxidoreductase NAD-binding domain NIY06_15715 PF00970 Oxidoreductase FAD-binding domain NIY06_15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_15720 PF03466 LysR substrate binding domain NIY06_15725 PF00313 'Cold-shock' DNA-binding domain NIY06_15735 PF00361 Proton-conducting membrane transporter NIY06_15740 PF00361 Proton-conducting membrane transporter NIY06_15745 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIY06_15745 PF00361 Proton-conducting membrane transporter NIY06_15750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIY06_15755 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NIY06_15760 PF12838 4Fe-4S dicluster domain NIY06_15765 PF00146 NADH dehydrogenase NIY06_15770 PF00384 Molybdopterin oxidoreductase NIY06_15770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NIY06_15770 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NIY06_15775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NIY06_15775 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NIY06_15775 PF10531 SLBB domain NIY06_15785 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NIY06_15785 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NIY06_15790 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NIY06_15795 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NIY06_15800 PF00990 Diguanylate cyclase, GGDEF domain NIY06_15800 PF17151 Periplasmic sensor domain NIY06_15810 PF00672 HAMP domain NIY06_15810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_15810 PF00512 His Kinase A (phospho-acceptor) domain NIY06_15815 PF00486 Transcriptional regulatory protein, C terminal NIY06_15815 PF00072 Response regulator receiver domain NIY06_15825 PF03477 ATP cone domain NIY06_15825 PF02867 Ribonucleotide reductase, barrel domain NIY06_15825 PF00317 Ribonucleotide reductase, all-alpha domain NIY06_15835 PF00268 Ribonucleotide reductase, small chain NIY06_15845 PF00672 HAMP domain NIY06_15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_15845 PF00512 His Kinase A (phospho-acceptor) domain NIY06_15845 PF13755 Sensor N-terminal transmembrane domain NIY06_15845 PF13756 Stimulus-sensing domain NIY06_15915 PF13360 PQQ-like domain NIY06_15915 PF01011 PQQ enzyme repeat NIY06_15940 PF02567 Phenazine biosynthesis-like protein NIY06_15965 PF01613 Flavin reductase like domain NIY06_15970 PF01717 Cobalamin-independent synthase, Catalytic domain NIY06_15970 PF08267 Cobalamin-independent synthase, N-terminal domain NIY06_15980 PF03466 LysR substrate binding domain NIY06_15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_15985 PF01810 LysE type translocator NIY06_15995 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NIY06_15995 PF12833 Helix-turn-helix domain NIY06_16000 PF01546 Peptidase family M20/M25/M40 NIY06_16000 PF07687 Peptidase dimerisation domain NIY06_16010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_16010 PF03466 LysR substrate binding domain NIY06_16015 PF07690 Major Facilitator Superfamily NIY06_16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_16025 PF03466 LysR substrate binding domain NIY06_16030 PF14537 Cytochrome c3 NIY06_16030 PF00890 FAD binding domain NIY06_16040 PF02515 CoA-transferase family III NIY06_16045 PF07690 Major Facilitator Superfamily NIY06_16050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_16050 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_16050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_16055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_16055 PF03466 LysR substrate binding domain NIY06_16060 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_16060 PF00107 Zinc-binding dehydrogenase NIY06_16065 PF00962 Adenosine/AMP deaminase NIY06_16090 PF02445 Quinolinate synthetase A protein NIY06_16095 PF01960 ArgJ family NIY06_16100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY06_16100 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIY06_16105 PF00893 Small Multidrug Resistance protein NIY06_16115 PF05275 Copper resistance protein B precursor (CopB) NIY06_16120 PF00394 Multicopper oxidase NIY06_16120 PF07731 Multicopper oxidase NIY06_16120 PF07732 Multicopper oxidase NIY06_16135 PF00834 Ribulose-phosphate 3 epimerase family NIY06_16145 PF00756 Putative esterase NIY06_16155 PF04445 Putative SAM-dependent methyltransferase NIY06_16160 PF00814 Glycoprotease family NIY06_16165 PF00132 Bacterial transferase hexapeptide (six repeats) NIY06_16170 PF00293 NUDIX domain NIY06_16210 PF04715 Anthranilate synthase component I, N terminal region NIY06_16210 PF00425 chorismate binding enzyme NIY06_16215 PF00155 Aminotransferase class I and II NIY06_16220 PF00815 Histidinol dehydrogenase NIY06_16225 PF01634 ATP phosphoribosyltransferase NIY06_16230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NIY06_16235 PF01722 BolA-like protein NIY06_16240 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NIY06_16245 PF04552 Sigma-54, DNA binding domain NIY06_16245 PF00309 Sigma-54 factor, Activator interacting domain (AID) NIY06_16245 PF04963 Sigma-54 factor, core binding domain NIY06_16290 PF00795 Carbon-nitrogen hydrolase NIY06_16300 PF01047 MarR family NIY06_16305 PF02566 OsmC-like protein NIY06_16310 PF00437 Type II/IV secretion system protein NIY06_16330 PF01367 5'-3' exonuclease, C-terminal SAM fold NIY06_16330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NIY06_16330 PF00476 DNA polymerase family A NIY06_16330 PF01612 3'-5' exonuclease NIY06_16335 PF02325 YGGT family NIY06_16340 PF14748 Pyrroline-5-carboxylate reductase dimerisation NIY06_16340 PF03807 NADP oxidoreductase coenzyme F420-dependent NIY06_16345 PF11734 TilS substrate C-terminal domain NIY06_16345 PF09179 TilS substrate binding domain NIY06_16345 PF01171 PP-loop family NIY06_16350 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NIY06_16355 PF02541 Ppx/GppA phosphatase family NIY06_16360 PF00085 Thioredoxin NIY06_16365 PF07497 Rho termination factor, RNA-binding domain NIY06_16365 PF07498 Rho termination factor, N-terminal domain NIY06_16365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY06_16380 PF00216 Bacterial DNA-binding protein NIY06_16385 PF03147 Ferredoxin-fold anticodon binding domain NIY06_16385 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NIY06_16385 PF03484 tRNA synthetase B5 domain NIY06_16385 PF03483 B3/4 domain NIY06_16385 PF01588 Putative tRNA binding domain NIY06_16390 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NIY06_16390 PF01409 tRNA synthetases class II core domain (F) NIY06_16410 PF00453 Ribosomal protein L20 NIY06_16415 PF01632 Ribosomal protein L35 NIY06_16425 PF07690 Major Facilitator Superfamily NIY06_16430 PF09335 SNARE associated Golgi protein NIY06_16435 PF00043 Glutathione S-transferase, C-terminal domain NIY06_16435 PF02798 Glutathione S-transferase, N-terminal domain NIY06_16440 PF05198 Translation initiation factor IF-3, N-terminal domain NIY06_16440 PF00707 Translation initiation factor IF-3, C-terminal domain NIY06_16445 PF03129 Anticodon binding domain NIY06_16445 PF02824 TGS domain NIY06_16445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NIY06_16445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NIY06_16450 PF00501 AMP-binding enzyme NIY06_16450 PF13193 AMP-binding enzyme C-terminal domain NIY06_16455 PF04751 Protein of unknown function (DUF615) NIY06_16460 PF00381 PTS HPr component phosphorylation site NIY06_16465 PF03668 P-loop ATPase protein family NIY06_16470 PF02569 Pantoate-beta-alanine ligase NIY06_16475 PF02548 Ketopantoate hydroxymethyltransferase NIY06_16480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NIY06_16485 PF01743 Poly A polymerase head domain NIY06_16485 PF12626 Polymerase A arginine-rich C-terminus NIY06_16485 PF12627 Probable RNA and SrmB- binding site of polymerase A NIY06_16495 PF03819 MazG nucleotide pyrophosphohydrolase domain NIY06_16505 PF02824 TGS domain NIY06_16505 PF04607 Region found in RelA / SpoT proteins NIY06_16505 PF13291 ACT domain NIY06_16510 PF05958 tRNA (Uracil-5-)-methyltransferase NIY06_16520 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_16525 PF00672 HAMP domain NIY06_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_16525 PF00512 His Kinase A (phospho-acceptor) domain NIY06_16525 PF01627 Hpt domain NIY06_16525 PF00072 Response regulator receiver domain NIY06_16525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NIY06_16530 PF00378 Enoyl-CoA hydratase/isomerase NIY06_16535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY06_16535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY06_16540 PF01261 Xylose isomerase-like TIM barrel NIY06_16550 PF00106 short chain dehydrogenase NIY06_16555 PF02233 NAD(P) transhydrogenase beta subunit NIY06_16560 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NIY06_16565 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NIY06_16565 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NIY06_16570 PF00892 EamA-like transporter family NIY06_16580 PF07690 Major Facilitator Superfamily NIY06_16585 PF01207 Dihydrouridine synthase (Dus) NIY06_16595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_16595 PF03466 LysR substrate binding domain NIY06_16605 PF00899 ThiF family NIY06_16615 PF00694 Aconitase C-terminal domain NIY06_16615 PF00330 Aconitase family (aconitate hydratase) NIY06_16620 PF01026 TatD related DNase NIY06_16635 PF00009 Elongation factor Tu GTP binding domain NIY06_16635 PF03144 Elongation factor Tu domain 2 NIY06_16635 PF16658 Class II release factor RF3, C-terminal domain NIY06_16655 PF00563 EAL domain NIY06_16655 PF03707 Bacterial signalling protein N terminal repeat NIY06_16655 PF00990 Diguanylate cyclase, GGDEF domain NIY06_16660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NIY06_16660 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NIY06_16665 PF10369 Small subunit of acetolactate synthase NIY06_16670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NIY06_16670 PF00205 Thiamine pyrophosphate enzyme, central domain NIY06_16670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NIY06_16680 PF08264 Anticodon-binding domain of tRNA NIY06_16680 PF00133 tRNA synthetases class I (I, L, M and V) NIY06_16680 PF09334 tRNA synthetases class I (M) NIY06_16680 PF13603 Leucyl-tRNA synthetase, Domain 2 NIY06_16695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NIY06_16700 PF02687 FtsX-like permease family NIY06_16700 PF12704 MacB-like periplasmic core domain NIY06_16700 PF00005 ABC transporter NIY06_16705 PF02321 Outer membrane efflux protein NIY06_16720 PF00929 Exonuclease NIY06_16725 PF03193 RsgA GTPase NIY06_16735 PF00462 Glutaredoxin NIY06_16740 PF02556 Preprotein translocase subunit SecB NIY06_16755 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_16755 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_16770 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_16770 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_16780 PF04820 Tryptophan halogenase NIY06_16800 PF00221 Aromatic amino acid lyase NIY06_16815 PF00501 AMP-binding enzyme NIY06_16815 PF13193 AMP-binding enzyme C-terminal domain NIY06_16825 PF00550 Phosphopantetheine attachment site NIY06_16830 PF00550 Phosphopantetheine attachment site NIY06_16845 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NIY06_16845 PF01926 50S ribosome-binding GTPase NIY06_16850 PF13360 PQQ-like domain NIY06_16860 PF13393 Histidyl-tRNA synthetase NIY06_16860 PF03129 Anticodon binding domain NIY06_16865 PF04551 GcpE protein NIY06_16870 PF13464 Domain of unknown function (DUF4115) NIY06_16880 PF04055 Radical SAM superfamily NIY06_16885 PF00334 Nucleoside diphosphate kinase NIY06_16890 PF04384 Iron-sulphur cluster assembly NIY06_16895 PF01569 PAP2 superfamily NIY06_16900 PF13439 Glycosyltransferase Family 4 NIY06_16900 PF00534 Glycosyl transferases group 1 NIY06_16905 PF11818 C-terminal domain of tail specific protease (DUF3340) NIY06_16905 PF00595 PDZ domain NIY06_16905 PF03572 Peptidase family S41 NIY06_16905 PF17804 Tail specific protease N-terminal domain NIY06_16910 PF00933 Glycosyl hydrolase family 3 N terminal domain NIY06_16920 PF00561 alpha/beta hydrolase fold NIY06_16925 PF00171 Aldehyde dehydrogenase family NIY06_16930 PF00171 Aldehyde dehydrogenase family NIY06_16935 PF01202 Shikimate kinase NIY06_16940 PF02447 GntP family permease NIY06_16945 PF01081 KDPG and KHG aldolase NIY06_16950 PF00920 Dehydratase family NIY06_16955 PF00871 Acetokinase family NIY06_16960 PF01515 Phosphate acetyl/butaryl transferase NIY06_16960 PF07085 DRTGG domain NIY06_16965 PF05681 Fumarate hydratase (Fumerase) NIY06_16965 PF05683 Fumarase C-terminus NIY06_16980 PF07724 AAA domain (Cdc48 subfamily) NIY06_16980 PF10431 C-terminal, D2-small domain, of ClpB protein NIY06_16980 PF06689 ClpX C4-type zinc finger NIY06_16985 PF00574 Clp protease NIY06_16990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY06_16990 PF05698 Bacterial trigger factor protein (TF) C-terminus NIY06_16990 PF05697 Bacterial trigger factor protein (TF) NIY06_16995 PF00593 TonB dependent receptor NIY06_16995 PF07715 TonB-dependent Receptor Plug Domain NIY06_17000 PF18331 PKHD-type hydroxylase C-terminal domain NIY06_17000 PF13640 2OG-Fe(II) oxygenase superfamily NIY06_17005 PF08502 LeuA allosteric (dimerisation) domain NIY06_17005 PF00682 HMGL-like NIY06_17010 PF00561 alpha/beta hydrolase fold NIY06_17015 PF00561 alpha/beta hydrolase fold NIY06_17015 PF07021 Methionine biosynthesis protein MetW NIY06_17025 PF01725 Ham1 family NIY06_17035 PF02416 mttA/Hcf106 family NIY06_17040 PF02416 mttA/Hcf106 family NIY06_17045 PF00902 Sec-independent protein translocase protein (TatC) NIY06_17065 PF01790 Prolipoprotein diacylglyceryl transferase NIY06_17080 PF00303 Thymidylate synthase NIY06_17085 PF00186 Dihydrofolate reductase NIY06_17095 PF01625 Peptide methionine sulfoxide reductase NIY06_17105 PF01618 MotA/TolQ/ExbB proton channel family NIY06_17115 PF00551 Formyl transferase NIY06_17115 PF01842 ACT domain NIY06_17125 PF00171 Aldehyde dehydrogenase family NIY06_17130 PF00830 Ribosomal L28 family NIY06_17135 PF00471 Ribosomal protein L33 NIY06_17140 PF02254 TrkA-N domain NIY06_17140 PF00999 Sodium/hydrogen exchanger family NIY06_17160 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NIY06_17165 PF13361 UvrD-like helicase C-terminal domain NIY06_17165 PF00580 UvrD/REP helicase N-terminal domain NIY06_17180 PF01751 Toprim domain NIY06_17180 PF01396 Topoisomerase DNA binding C4 zinc finger NIY06_17180 PF08272 Topoisomerase I zinc-ribbon-like NIY06_17180 PF01131 DNA topoisomerase NIY06_17190 PF01638 HxlR-like helix-turn-helix NIY06_17195 PF08240 Alcohol dehydrogenase GroES-like domain NIY06_17195 PF00107 Zinc-binding dehydrogenase NIY06_17200 PF04102 SlyX NIY06_17205 PF00005 ABC transporter NIY06_17205 PF16326 ABC transporter C-terminal domain NIY06_17205 PF12848 ABC transporter NIY06_17210 PF01810 LysE type translocator NIY06_17215 PF03279 Bacterial lipid A biosynthesis acyltransferase NIY06_17225 PF00375 Sodium:dicarboxylate symporter family NIY06_17235 PF01118 Semialdehyde dehydrogenase, NAD binding domain NIY06_17235 PF02774 Semialdehyde dehydrogenase, dimerisation domain NIY06_17255 PF01416 tRNA pseudouridine synthase NIY06_17265 PF01176 Translation initiation factor 1A / IF-1 NIY06_17280 PF00180 Isocitrate/isopropylmalate dehydrogenase NIY06_17290 PF00694 Aconitase C-terminal domain NIY06_17295 PF00330 Aconitase family (aconitate hydratase) NIY06_17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_17305 PF03466 LysR substrate binding domain NIY06_17325 PF00293 NUDIX domain NIY06_17330 PF01590 GAF domain NIY06_17330 PF05524 PEP-utilising enzyme, N-terminal NIY06_17330 PF00391 PEP-utilising enzyme, mobile domain NIY06_17330 PF02896 PEP-utilising enzyme, TIM barrel domain NIY06_17335 PF00141 Peroxidase NIY06_17340 PF12706 Beta-lactamase superfamily domain NIY06_17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_17345 PF03466 LysR substrate binding domain NIY06_17355 PF02798 Glutathione S-transferase, N-terminal domain NIY06_17360 PF08279 HTH domain NIY06_17360 PF13280 WYL domain NIY06_17365 PF13419 Haloacid dehalogenase-like hydrolase NIY06_17370 PF00849 RNA pseudouridylate synthase NIY06_17370 PF01479 S4 domain NIY06_17375 PF10150 Ribonuclease E/G family NIY06_17375 PF00575 S1 RNA binding domain NIY06_17375 PF12111 Polyribonucleotide phosphorylase C terminal NIY06_17380 PF00501 AMP-binding enzyme NIY06_17380 PF13193 AMP-binding enzyme C-terminal domain NIY06_17395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_17395 PF03466 LysR substrate binding domain NIY06_17400 PF00106 short chain dehydrogenase NIY06_17405 PF06969 HemN C-terminal domain NIY06_17405 PF04055 Radical SAM superfamily NIY06_17415 PF01554 MatE NIY06_17420 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_17420 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY06_17420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_17425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_17425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NIY06_17430 PF03109 ABC1 family NIY06_17435 PF01197 Ribosomal protein L31 NIY06_17450 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NIY06_17470 PF03884 DNA gyrase inhibitor YacG NIY06_17475 PF00753 Metallo-beta-lactamase superfamily NIY06_17480 PF00762 Ferrochelatase NIY06_17490 PF01177 Asp/Glu/Hydantoin racemase NIY06_17505 PF01206 Sulfurtransferase TusA NIY06_17510 PF03471 Transporter associated domain NIY06_17510 PF00571 CBS domain NIY06_17515 PF00795 Carbon-nitrogen hydrolase NIY06_17520 PF01588 Putative tRNA binding domain NIY06_17530 PF07963 Prokaryotic N-terminal methylation motif NIY06_17530 PF08334 Type II secretion system (T2SS), protein G NIY06_17535 PF00482 Type II secretion system (T2SS), protein F NIY06_17540 PF00271 Helicase conserved C-terminal domain NIY06_17540 PF00270 DEAD/DEAH box helicase NIY06_17540 PF17764 3′ DNA-binding domain (3′BD) NIY06_17540 PF18074 Primosomal protein N C-terminal domain NIY06_17540 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NIY06_17545 PF00999 Sodium/hydrogen exchanger family NIY06_17545 PF02254 TrkA-N domain NIY06_17550 PF01430 Hsp33 protein NIY06_17560 PF00226 DnaJ domain NIY06_17560 PF01556 DnaJ C terminal domain NIY06_17570 PF01544 CorA-like Mg2+ transporter protein NIY06_17575 PF00575 S1 RNA binding domain NIY06_17575 PF03725 3' exoribonuclease family, domain 2 NIY06_17575 PF00013 KH domain NIY06_17575 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NIY06_17575 PF01138 3' exoribonuclease family, domain 1 NIY06_17580 PF00312 Ribosomal protein S15 NIY06_17585 PF00144 Beta-lactamase NIY06_17590 PF13538 UvrD-like helicase C-terminal domain NIY06_17595 PF12705 PD-(D/E)XK nuclease superfamily NIY06_17595 PF13361 UvrD-like helicase C-terminal domain NIY06_17595 PF00580 UvrD/REP helicase N-terminal domain NIY06_17600 PF17946 RecC C-terminal domain NIY06_17610 PF03976 Polyphosphate kinase 2 (PPK2) NIY06_17620 PF01209 ubiE/COQ5 methyltransferase family NIY06_17630 PF03109 ABC1 family NIY06_17635 PF01494 FAD binding domain NIY06_17640 PF01502 Phosphoribosyl-AMP cyclohydrolase NIY06_17655 PF13244 Domain of unknown function (DUF4040) NIY06_17655 PF00361 Proton-conducting membrane transporter NIY06_17655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NIY06_17655 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NIY06_17660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NIY06_17665 PF00361 Proton-conducting membrane transporter NIY06_17670 PF01899 Na+/H+ ion antiporter subunit NIY06_17675 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NIY06_17680 PF03334 Na+/H+ antiporter subunit NIY06_17685 PF02033 Ribosome-binding factor A NIY06_17690 PF00009 Elongation factor Tu GTP binding domain NIY06_17690 PF11987 Translation-initiation factor 2 NIY06_17690 PF04760 Translation initiation factor IF-2, N-terminal region NIY06_17690 PF08364 Bacterial translation initiation factor IF-2 associated region NIY06_17695 PF00575 S1 RNA binding domain NIY06_17695 PF08529 NusA N-terminal domain NIY06_17695 PF13184 NusA-like KH domain NIY06_17700 PF02576 RimP N-terminal domain NIY06_17700 PF17384 RimP C-terminal SH3 domain NIY06_17720 PF03840 Preprotein translocase SecG subunit NIY06_17725 PF00121 Triosephosphate isomerase NIY06_17730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NIY06_17730 PF00437 Type II/IV secretion system protein NIY06_17735 PF00482 Type II secretion system (T2SS), protein F NIY06_17745 PF06750 Bacterial Peptidase A24 N-terminal domain NIY06_17745 PF01478 Type IV leader peptidase family NIY06_17750 PF01121 Dephospho-CoA kinase NIY06_17760 PF00588 SpoU rRNA Methylase family NIY06_17760 PF08032 RNA 2'-O ribose methyltransferase substrate binding NIY06_17765 PF06865 Pyrimidine/purine nucleoside phosphorylase NIY06_17775 PF02463 RecF/RecN/SMC N terminal domain NIY06_17780 PF02622 Uncharacterized ACR, COG1678 NIY06_17785 PF03652 Holliday junction resolvase NIY06_17790 PF13533 Biotin-lipoyl like NIY06_17815 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NIY06_17815 PF02805 Metal binding domain of Ada NIY06_17815 PF12833 Helix-turn-helix domain NIY06_17815 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NIY06_17820 PF01066 CDP-alcohol phosphatidyltransferase NIY06_17830 PF08459 UvrC Helix-hairpin-helix N-terminal NIY06_17830 PF02151 UvrB/uvrC motif NIY06_17830 PF01541 GIY-YIG catalytic domain NIY06_17850 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NIY06_17850 PF00378 Enoyl-CoA hydratase/isomerase NIY06_17850 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NIY06_17855 PF02803 Thiolase, C-terminal domain NIY06_17855 PF00108 Thiolase, N-terminal domain NIY06_17875 PF00376 MerR family regulatory protein NIY06_17875 PF09278 MerR, DNA binding NIY06_17885 PF01323 DSBA-like thioredoxin domain NIY06_17900 PF00183 Hsp90 protein NIY06_17900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_17915 PF03553 Na+/H+ antiporter family NIY06_17915 PF13726 Na+-H+ antiporter family NIY06_17920 PF00561 alpha/beta hydrolase fold NIY06_17940 PF05000 RNA polymerase Rpb1, domain 4 NIY06_17940 PF00623 RNA polymerase Rpb1, domain 2 NIY06_17940 PF04997 RNA polymerase Rpb1, domain 1 NIY06_17940 PF04998 RNA polymerase Rpb1, domain 5 NIY06_17940 PF04983 RNA polymerase Rpb1, domain 3 NIY06_17945 PF04561 RNA polymerase Rpb2, domain 2 NIY06_17945 PF04565 RNA polymerase Rpb2, domain 3 NIY06_17945 PF10385 RNA polymerase beta subunit external 1 domain NIY06_17945 PF00562 RNA polymerase Rpb2, domain 6 NIY06_17945 PF04560 RNA polymerase Rpb2, domain 7 NIY06_17945 PF04563 RNA polymerase beta subunit NIY06_17950 PF00542 Ribosomal protein L7/L12 C-terminal domain NIY06_17950 PF16320 Ribosomal protein L7/L12 dimerisation domain NIY06_17955 PF00466 Ribosomal protein L10 NIY06_17960 PF00687 Ribosomal protein L1p/L10e family NIY06_17965 PF00298 Ribosomal protein L11, RNA binding domain NIY06_17965 PF03946 Ribosomal protein L11, N-terminal domain NIY06_17970 PF00467 KOW motif NIY06_17970 PF02357 Transcription termination factor nusG NIY06_17975 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NIY06_17985 PF03143 Elongation factor Tu C-terminal domain NIY06_17985 PF03144 Elongation factor Tu domain 2 NIY06_17985 PF00009 Elongation factor Tu GTP binding domain NIY06_18010 PF00425 chorismate binding enzyme NIY06_18010 PF04715 Anthranilate synthase component I, N terminal region NIY06_18015 PF13419 Haloacid dehalogenase-like hydrolase NIY06_18020 PF12401 Protein of unknown function (DUF2662) NIY06_18020 PF00498 FHA domain NIY06_18025 PF00263 Bacterial type II and III secretion system protein NIY06_18025 PF03958 Bacterial type II/III secretion system short domain NIY06_18040 PF00816 H-NS histone family NIY06_18065 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NIY06_18065 PF03900 Porphobilinogen deaminase, C-terminal domain NIY06_18070 PF00072 Response regulator receiver domain NIY06_18070 PF04397 LytTr DNA-binding domain NIY06_18075 PF07694 5TMR of 5TMR-LYT NIY06_18075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_18075 PF06580 Histidine kinase NIY06_18080 PF14698 Argininosuccinate lyase C-terminal NIY06_18080 PF00206 Lyase NIY06_18085 PF04362 Bacterial Fe(2+) trafficking NIY06_18090 PF01895 PhoU domain NIY06_18095 PF02321 Outer membrane efflux protein NIY06_18100 PF00892 EamA-like transporter family NIY06_18115 PF13667 ThiC-associated domain NIY06_18115 PF01964 Radical SAM ThiC family NIY06_18120 PF00293 NUDIX domain NIY06_18125 PF00149 Calcineurin-like phosphoesterase NIY06_18130 PF01258 Prokaryotic dksA/traR C4-type zinc finger NIY06_18135 PF00749 tRNA synthetases class I (E and Q), catalytic domain NIY06_18140 PF01098 Cell cycle protein NIY06_18145 PF08245 Mur ligase middle domain NIY06_18145 PF02875 Mur ligase family, glutamate ligase domain NIY06_18155 PF07664 Ferrous iron transport protein B C terminus NIY06_18155 PF02421 Ferrous iron transport protein B NIY06_18155 PF07670 Nucleoside recognition NIY06_18165 PF00589 Phage integrase family NIY06_18165 PF02899 Phage integrase, N-terminal SAM-like domain NIY06_18170 PF13098 Thioredoxin-like domain NIY06_18170 PF10411 Disulfide bond isomerase protein N-terminus NIY06_18175 PF01842 ACT domain NIY06_18175 PF00742 Homoserine dehydrogenase NIY06_18175 PF03447 Homoserine dehydrogenase, NAD binding domain NIY06_18180 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_18185 PF00768 D-alanyl-D-alanine carboxypeptidase NIY06_18190 PF00196 Bacterial regulatory proteins, luxR family NIY06_18190 PF00072 Response regulator receiver domain NIY06_18195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NIY06_18195 PF00512 His Kinase A (phospho-acceptor) domain NIY06_18200 PF02954 Bacterial regulatory protein, Fis family NIY06_18200 PF00072 Response regulator receiver domain NIY06_18200 PF00158 Sigma-54 interaction domain NIY06_18205 PF03572 Peptidase family S41 NIY06_18205 PF00595 PDZ domain NIY06_18210 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NIY06_18210 PF01676 Metalloenzyme superfamily NIY06_18215 PF03739 Lipopolysaccharide export system permease LptF/LptG NIY06_18225 PF00883 Cytosol aminopeptidase family, catalytic domain NIY06_18225 PF02789 Cytosol aminopeptidase family, N-terminal domain NIY06_18245 PF00677 Lumazine binding domain NIY06_18255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NIY06_18255 PF01872 RibD C-terminal domain NIY06_18260 PF03477 ATP cone domain NIY06_18265 PF00909 Ammonium Transporter Family NIY06_18270 PF00543 Nitrogen regulatory protein P-II NIY06_18290 PF01636 Phosphotransferase enzyme family NIY06_18295 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NIY06_18315 PF02909 Tetracyclin repressor-like, C-terminal domain NIY06_18315 PF00440 Bacterial regulatory proteins, tetR family NIY06_18320 PF07690 Major Facilitator Superfamily NIY06_18330 PF01740 STAS domain NIY06_18330 PF00916 Sulfate permease family NIY06_18335 PF00582 Universal stress protein family NIY06_18355 PF00665 Integrase core domain NIY06_18370 PF00155 Aminotransferase class I and II NIY06_18370 PF00392 Bacterial regulatory proteins, gntR family NIY06_18380 PF00701 Dihydrodipicolinate synthetase family NIY06_18395 PF03573 outer membrane porin, OprD family NIY06_18400 PF00719 Inorganic pyrophosphatase NIY06_18415 PF00501 AMP-binding enzyme NIY06_18415 PF13193 AMP-binding enzyme C-terminal domain NIY06_18420 PF00521 DNA gyrase/topoisomerase IV, subunit A NIY06_18420 PF03989 DNA gyrase C-terminal domain, beta-propeller NIY06_18425 PF07690 Major Facilitator Superfamily NIY06_18430 PF03458 UPF0126 domain NIY06_18435 PF02810 SEC-C motif NIY06_18440 PF03471 Transporter associated domain NIY06_18440 PF03741 Integral membrane protein TerC family NIY06_18445 PF03641 Possible lysine decarboxylase NIY06_18450 PF07690 Major Facilitator Superfamily NIY06_18460 PF11799 impB/mucB/samB family C-terminal domain NIY06_18460 PF11798 IMS family HHH motif NIY06_18460 PF00817 impB/mucB/samB family NIY06_18480 PF11842 Domain of unknown function (DUF3362) NIY06_18480 PF04055 Radical SAM superfamily NIY06_18480 PF08497 Radical SAM N-terminal NIY06_18500 PF03358 NADPH-dependent FMN reductase NIY06_18510 PF00291 Pyridoxal-phosphate dependent enzyme NIY06_18570 PF01327 Polypeptide deformylase NIY06_18580 PF17782 DprA winged helix domain NIY06_18580 PF02481 DNA recombination-mediator protein A NIY06_18585 PF01300 Telomere recombination NIY06_18590 PF00892 EamA-like transporter family NIY06_18595 PF00440 Bacterial regulatory proteins, tetR family NIY06_18600 PF07690 Major Facilitator Superfamily NIY06_18610 PF00255 Glutathione peroxidase NIY06_18620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NIY06_18625 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIY06_18625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY06_18630 PF00231 ATP synthase NIY06_18635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NIY06_18635 PF00306 ATP synthase alpha/beta chain, C terminal domain NIY06_18635 PF02874 ATP synthase alpha/beta family, beta-barrel domain NIY06_18640 PF00213 ATP synthase delta (OSCP) subunit NIY06_18645 PF00430 ATP synthase B/B' CF(0) NIY06_18650 PF00137 ATP synthase subunit C NIY06_18655 PF00119 ATP synthase A chain NIY06_18675 PF00005 ABC transporter NIY06_18680 PF00950 ABC 3 transport family NIY06_18685 PF01810 LysE type translocator NIY06_18690 PF04261 Dyp-type peroxidase family NIY06_18700 PF00390 Malic enzyme, N-terminal domain NIY06_18700 PF03949 Malic enzyme, NAD binding domain NIY06_18705 PF03485 Arginyl tRNA synthetase N terminal domain NIY06_18705 PF05746 DALR anticodon binding domain NIY06_18705 PF00750 tRNA synthetases class I (R) NIY06_18725 PF02678 Pirin NIY06_18725 PF05726 Pirin C-terminal cupin domain NIY06_18735 PF03551 Transcriptional regulator PadR-like family NIY06_18740 PF13427 Domain of unknown function (DUF4111) NIY06_18740 PF01909 Nucleotidyltransferase domain NIY06_18745 PF00117 Glutamine amidotransferase class-I NIY06_18745 PF00958 GMP synthase C terminal domain NIY06_18745 PF02540 NAD synthase NIY06_18750 PF04286 Protein of unknown function (DUF445) NIY06_18755 PF07681 DoxX NIY06_18760 PF09335 SNARE associated Golgi protein NIY06_18775 PF13614 AAA domain NIY06_18785 PF01722 BolA-like protein NIY06_18800 PF01648 4'-phosphopantetheinyl transferase superfamily NIY06_18805 PF12697 Alpha/beta hydrolase family NIY06_18825 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_18825 PF16197 Ketoacyl-synthetase C-terminal extension NIY06_18825 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_18825 PF00550 Phosphopantetheine attachment site NIY06_18825 PF08242 Methyltransferase domain NIY06_18825 PF00975 Thioesterase domain NIY06_18825 PF14765 Polyketide synthase dehydratase NIY06_18830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_18830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_18830 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_18835 PF00501 AMP-binding enzyme NIY06_18840 PF03472 Autoinducer binding domain NIY06_18840 PF00196 Bacterial regulatory proteins, luxR family NIY06_18850 PF00765 Autoinducer synthase NIY06_18855 PF00083 Sugar (and other) transporter NIY06_18855 PF07690 Major Facilitator Superfamily NIY06_18860 PF00378 Enoyl-CoA hydratase/isomerase NIY06_18865 PF00378 Enoyl-CoA hydratase/isomerase NIY06_18870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NIY06_18870 PF02770 Acyl-CoA dehydrogenase, middle domain NIY06_18870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NIY06_18875 PF00501 AMP-binding enzyme NIY06_18875 PF13193 AMP-binding enzyme C-terminal domain NIY06_18880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NIY06_18880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NIY06_18885 PF00171 Aldehyde dehydrogenase family NIY06_18895 PF00324 Amino acid permease NIY06_18900 PF00324 Amino acid permease NIY06_18905 PF01042 Endoribonuclease L-PSP NIY06_18910 PF01168 Alanine racemase, N-terminal domain NIY06_18910 PF00842 Alanine racemase, C-terminal domain NIY06_18915 PF01266 FAD dependent oxidoreductase NIY06_18920 PF01037 Lrp/AsnC ligand binding domain NIY06_18930 PF00593 TonB dependent receptor NIY06_18930 PF07715 TonB-dependent Receptor Plug Domain NIY06_18945 PF00849 RNA pseudouridylate synthase NIY06_18960 PF08361 MAATS-type transcriptional repressor, C-terminal region NIY06_18960 PF00440 Bacterial regulatory proteins, tetR family NIY06_18970 PF00109 Beta-ketoacyl synthase, N-terminal domain NIY06_18970 PF02801 Beta-ketoacyl synthase, C-terminal domain NIY06_19005 PF00694 Aconitase C-terminal domain NIY06_19005 PF00330 Aconitase family (aconitate hydratase) NIY06_19010 PF00285 Citrate synthase, C-terminal domain NIY06_19020 PF00392 Bacterial regulatory proteins, gntR family NIY06_19020 PF07729 FCD domain NIY06_19030 PF00155 Aminotransferase class I and II NIY06_19035 PF01565 FAD binding domain NIY06_19035 PF09330 D-lactate dehydrogenase, membrane binding NIY06_19040 PF01070 FMN-dependent dehydrogenase NIY06_19045 PF00392 Bacterial regulatory proteins, gntR family NIY06_19045 PF07729 FCD domain NIY06_19050 PF02652 L-lactate permease NIY06_19055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NIY06_19055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NIY06_19055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NIY06_19055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NIY06_19060 PF16363 GDP-mannose 4,6 dehydratase NIY06_19065 PF00342 Phosphoglucose isomerase NIY06_19070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIY06_19070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIY06_19070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIY06_19075 PF00483 Nucleotidyl transferase NIY06_19080 PF02397 Bacterial sugar transferase NIY06_19085 PF00535 Glycosyl transferase family 2 NIY06_19115 PF08666 SAF domain NIY06_19115 PF03102 NeuB family NIY06_19130 PF02348 Cytidylyltransferase NIY06_19135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NIY06_19140 PF02719 Polysaccharide biosynthesis protein NIY06_19145 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NIY06_19145 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NIY06_19145 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NIY06_19150 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NIY06_19150 PF02563 Polysaccharide biosynthesis/export protein NIY06_19150 PF10531 SLBB domain NIY06_19155 PF01451 Low molecular weight phosphotyrosine protein phosphatase NIY06_19160 PF02706 Chain length determinant protein NIY06_19160 PF13614 AAA domain NIY06_19160 PF13807 G-rich domain on putative tyrosine kinase NIY06_19165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIY06_19165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY06_19170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NIY06_19170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY06_19175 PF03023 Lipid II flippase MurJ NIY06_19180 PF01510 N-acetylmuramoyl-L-alanine amidase NIY06_19185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NIY06_19185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NIY06_19200 PF01138 3' exoribonuclease family, domain 1 NIY06_19200 PF03725 3' exoribonuclease family, domain 2 NIY06_19205 PF00487 Fatty acid desaturase NIY06_19210 PF00175 Oxidoreductase NAD-binding domain NIY06_19215 PF00440 Bacterial regulatory proteins, tetR family NIY06_19220 PF00440 Bacterial regulatory proteins, tetR family NIY06_19220 PF08360 QacR-like protein, C-terminal region NIY06_19225 PF01323 DSBA-like thioredoxin domain NIY06_19235 PF13419 Haloacid dehalogenase-like hydrolase NIY06_19240 PF00106 short chain dehydrogenase NIY06_19255 PF00583 Acetyltransferase (GNAT) family NIY06_19255 PF00696 Amino acid kinase family NIY06_19260 PF09084 NMT1/THI5 like NIY06_19265 PF09084 NMT1/THI5 like NIY06_19270 PF00296 Luciferase-like monooxygenase NIY06_19275 PF00528 Binding-protein-dependent transport system inner membrane component NIY06_19280 PF00005 ABC transporter NIY06_19285 PF08362 YcdC-like protein, C-terminal region NIY06_19285 PF00440 Bacterial regulatory proteins, tetR family NIY06_19290 PF01048 Phosphorylase superfamily NIY06_19300 PF06574 FAD synthetase NIY06_19300 PF01687 Riboflavin kinase NIY06_19305 PF08264 Anticodon-binding domain of tRNA NIY06_19305 PF06827 Zinc finger found in FPG and IleRS NIY06_19305 PF00133 tRNA synthetases class I (I, L, M and V) NIY06_19310 PF01252 Signal peptidase (SPase) II NIY06_19315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NIY06_19355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NIY06_19360 PF07859 alpha/beta hydrolase fold NIY06_19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NIY06_19380 PF03466 LysR substrate binding domain NIY06_19385 PF01025 GrpE NIY06_19390 PF00012 Hsp70 protein NIY06_19410 PF13406 Transglycosylase SLT domain NIY06_19415 PF02222 ATP-grasp domain NIY06_19415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NIY06_19420 PF00731 AIR carboxylase NIY06_19430 PF02875 Mur ligase family, glutamate ligase domain NIY06_19430 PF01225 Mur ligase family, catalytic domain NIY06_19430 PF08245 Mur ligase middle domain NIY06_19440 PF01569 PAP2 superfamily NIY06_19445 PF03741 Integral membrane protein TerC family NIY06_19455 PF03738 Glutathionylspermidine synthase preATP-grasp NIY06_19460 PF00355 Rieske [2Fe-2S] domain NIY06_19465 PF01979 Amidohydrolase family NIY06_19470 PF00156 Phosphoribosyl transferase domain NIY06_19480 PF10411 Disulfide bond isomerase protein N-terminus NIY06_19480 PF13098 Thioredoxin-like domain NIY06_19485 PF16916 Dimerisation domain of Zinc Transporter NIY06_19485 PF01545 Cation efflux family NIY06_19490 PF02583 Metal-sensitive transcriptional repressor NIY06_19495 PF01926 50S ribosome-binding GTPase NIY06_19495 PF12631 MnmE helical domain NIY06_19495 PF10396 GTP-binding protein TrmE N-terminus NIY06_19500 PF02096 60Kd inner membrane protein NIY06_19500 PF14849 YidC periplasmic domain NIY06_19505 PF01809 Putative membrane protein insertion efficiency factor NIY06_19510 PF00825 Ribonuclease P NIY06_19515 PF00468 Ribosomal protein L34