locus-tag	class	description
CBI29_00001	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CBI29_00002	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CBI29_00003	COG0596	Alpha beta hydrolase
CBI29_00014	COG0488	(ABC) transporter
CBI29_00015	COG0586	Pfam SNARE associated Golgi protein
CBI29_00017	COG0187	DNA topoisomerase II activity
CBI29_00019	COG0592	DNA-directed DNA polymerase activity
CBI29_00021	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CBI29_00024	COG0706	membrane insertase activity
CBI29_00027	COG1230	cation diffusion facilitator family transporter
CBI29_00028	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CBI29_00032	COG0402	S-adenosylhomocysteine deaminase activity
CBI29_00034	COG0754	glutathionylspermidine amidase activity
CBI29_00036	COG0861	Integral membrane protein TerC family
CBI29_00037	COG0671	phosphoesterase, PA-phosphatase related
CBI29_00039	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CBI29_00042	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CBI29_00044	COG2951	lytic endotransglycosylase activity
CBI29_00050	COG0583	DNA-binding transcription factor activity
CBI29_00055	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CBI29_00060	COG1047	Peptidyl-prolyl cis-trans
CBI29_00062	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CBI29_00063	COG0196	riboflavin kinase activity
CBI29_00065	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CBI29_00066	COG1309	transcriptional regulator
CBI29_00067	COG1116	anion transmembrane transporter activity
CBI29_00068	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CBI29_00069	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CBI29_00070	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CBI29_00071	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CBI29_00075	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_00076	COG0546	phosphoglycolate phosphatase activity
CBI29_00087	COG3023	N-Acetylmuramoyl-L-alanine amidase
CBI29_00088	COG0728	peptidoglycan biosynthetic process
CBI29_00094	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CBI29_00103	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CBI29_00105	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CBI29_00108	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CBI29_00111	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CBI29_00112	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CBI29_00114	COG2186	Transcriptional regulator
CBI29_00116	COG0277	FAD linked oxidase domain protein
CBI29_00117	COG1448	Aminotransferase
CBI29_00118	COG1802	Transcriptional regulator
CBI29_00121	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CBI29_00125	COG3328	transposase activity
CBI29_00128	COG0564	pseudouridine synthase activity
CBI29_00133	COG1522	sequence-specific DNA binding
CBI29_00136	COG0251	oxidation-reduction process
CBI29_00137	COG1113	amino acid transport
CBI29_00138	COG1113	amino acid transport
CBI29_00142	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CBI29_00143	COG1960	acyl-CoA dehydrogenase activity
CBI29_00144	COG1024	Enoyl-CoA hydratase
CBI29_00145	COG1024	Enoyl-CoA hydratase
CBI29_00146	COG0477	Major facilitator Superfamily
CBI29_00147	COG3916	Acyl-homoserine-lactone synthase
CBI29_00149	COG2197	response regulator
CBI29_00151	COG1960	acyl-CoA dehydrogenase activity
CBI29_00152	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CBI29_00152	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CBI29_00152	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CBI29_00152	COG3321	synthase
CBI29_00156	COG2267	carboxylic ester hydrolase activity
CBI29_00160	COG0271	Belongs to the BolA IbaG family
CBI29_00162	COG1192	Involved in chromosome partitioning
CBI29_00165	COG0586	Pfam SNARE associated Golgi protein
CBI29_00166	COG2259	Doxx family
CBI29_00167	COG4399	Belongs to the UPF0754 family
CBI29_00168	COG0519	Catalyzes the synthesis of GMP from XMP
CBI29_00168	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CBI29_00177	COG0281	malic enzyme
CBI29_00178	COG2837	iron assimilation
CBI29_00179	COG1280	lysine exporter protein (LysE YggA)
CBI29_00180	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CBI29_00181	COG1121	(ABC) transporter
CBI29_00194	COG0386	Belongs to the glutathione peroxidase family
CBI29_00197	COG1309	transcriptional regulator
CBI29_00198	COG0697	spore germination
CBI29_00200	COG0758	DNA mediated transformation
CBI29_00211	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CBI29_00213	COG0655	NAD(P)H dehydrogenase (quinone) activity
CBI29_00220	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CBI29_00222	COG2814	Major facilitator Superfamily
CBI29_00224	COG1253	flavin adenine dinucleotide binding
CBI29_00225	COG3012	SEC-C Motif Domain Protein
CBI29_00226	COG2860	membrane
CBI29_00227	COG0477	Major facilitator Superfamily
CBI29_00229	COG0318	PFAM AMP-dependent synthetase and ligase
CBI29_00232	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CBI29_00236	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CBI29_00238	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CBI29_00239	COG0606	chelatase, subunit chli
CBI29_00245	COG2072	flavoprotein involved in K transport
CBI29_00246	COG0492	ferredoxin-NADP+ reductase activity
CBI29_00247	COG0431	NADPH-dependent FMN reductase
CBI29_00248	COG0798	PFAM Bile acid sodium symporter
CBI29_00250	COG0640	Transcriptional regulator
CBI29_00253	COG0789	Transcriptional regulator
CBI29_00258	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CBI29_00264	COG3316	Transposase and inactivated derivatives
CBI29_00270	COG0789	Transcriptional regulator
CBI29_00273	COG0697	spore germination
CBI29_00276	COG1662	PFAM IS1 transposase
CBI29_00281	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CBI29_00282	COG3316	Transposase and inactivated derivatives
CBI29_00284	COG3316	Transposase and inactivated derivatives
CBI29_00293	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CBI29_00295	COG0789	Transcriptional regulator
CBI29_00299	COG3316	Transposase and inactivated derivatives
CBI29_00300	COG0659	secondary active sulfate transmembrane transporter activity
CBI29_00304	COG0347	Belongs to the P(II) protein family
CBI29_00305	COG0004	ammonium transporteR
CBI29_00307	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CBI29_00307	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CBI29_00315	COG0795	lipopolysaccharide-transporting ATPase activity
CBI29_00316	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CBI29_00317	COG0793	Belongs to the peptidase S41A family
CBI29_00320	COG2197	response regulator
CBI29_00322	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CBI29_00324	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CBI29_00325	COG4974	Belongs to the 'phage' integrase family
CBI29_00330	COG0772	Belongs to the SEDS family
CBI29_00331	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CBI29_00332	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CBI29_00333	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CBI29_00338	COG0697	spore germination
CBI29_00339	COG1538	Outer membrane efflux protein
CBI29_00343	COG3275	phosphorelay sensor kinase activity
CBI29_00345	COG0181	hydroxymethylbilane synthase activity
CBI29_00354	COG1716	ATPase activity
CBI29_00355	COG0546	phosphoglycolate phosphatase activity
CBI29_00375	COG2056	Na+-H+ antiporter family
CBI29_00378	COG0326	Molecular chaperone. Has ATPase activity
CBI29_00381	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CBI29_00393	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CBI29_00394	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CBI29_00394	COG2169	Transcriptional regulator
CBI29_00400	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CBI29_00402	COG0497	DNA recombination
CBI29_00405	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CBI29_00407	COG0237	dephospho-CoA kinase activity
CBI29_00417	COG0195	Participates in both transcription termination and antitermination
CBI29_00421	COG2212	antiporter activity
CBI29_00423	COG0651	ATP synthesis coupled electron transport
CBI29_00424	COG1006	Multisubunit Na H antiporter MnhC subunit
CBI29_00425	COG2111	Na H antiporter
CBI29_00425	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CBI29_00428	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CBI29_00429	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CBI29_00432	COG2226	methyltransferase
CBI29_00436	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CBI29_00437	COG1074	ATP-dependent DNA helicase activity
CBI29_00438	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CBI29_00442	COG0598	Magnesium transport protein CorA
CBI29_00443	COG0789	Transcriptional regulator
CBI29_00444	COG0484	heat shock protein binding
CBI29_00447	COG0475	glutathione-regulated potassium exporter activity
CBI29_00447	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CBI29_00448	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CBI29_00452	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CBI29_00454	COG4535	Mg2 and Co2 transporter CorC
CBI29_00455	COG0425	Belongs to the sulfur carrier protein TusA family
CBI29_00457	COG0644	oxidoreductase
CBI29_00457	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CBI29_00459	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CBI29_00462	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CBI29_00463	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CBI29_00470	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CBI29_00473	COG0534	Mate efflux family protein
CBI29_00475	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CBI29_00476	COG4221	oxidoreductase activity
CBI29_00477	COG0583	DNA-binding transcription factor activity
CBI29_00481	COG1530	ribonuclease E activity
CBI29_00483	COG0546	phosphoglycolate phosphatase activity
CBI29_00484	COG2378	regulation of single-species biofilm formation
CBI29_00485	COG0625	glutathione transferase activity
CBI29_00487	COG0583	DNA-binding transcription factor activity
CBI29_00498	COG0473	3-isopropylmalate dehydrogenase activity
CBI29_00509	COG1301	dicarboxylic acid transport
CBI29_00511	COG1560	Kdo2-lipid A biosynthetic process
CBI29_00512	COG1280	lysine exporter protein (LysE YggA)
CBI29_00516	COG1733	regulation of RNA biosynthetic process
CBI29_00521	COG0210	DNA helicase
CBI29_00522	COG0724	RNA recognition motif
CBI29_00526	COG4651	solute:proton antiporter activity
CBI29_00526	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CBI29_00527	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CBI29_00528	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CBI29_00531	COG0788	formyltetrahydrofolate deformylase activity
CBI29_00551	COG2813	Specifically methylates the guanine in position
CBI29_00551	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CBI29_00553	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CBI29_00555	COG4774	siderophore transport
CBI29_00557	COG0740	serine-type endopeptidase activity
CBI29_00561	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CBI29_00561	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CBI29_00562	COG0857	belongs to the CobB CobQ family
CBI29_00562	COG0280	phosphate acetyltransferase
CBI29_00563	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CBI29_00567	COG3265	gluconokinase activity
CBI29_00568	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_00570	COG2267	carboxylic ester hydrolase activity
CBI29_00573	COG0793	Belongs to the peptidase S41A family
CBI29_00580	COG1426	Protein conserved in bacteria
CBI29_00588	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CBI29_00590	COG1162	GTPase activity
CBI29_00591	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CBI29_00594	COG1538	Outer membrane efflux protein
CBI29_00595	COG0577	efflux transmembrane transporter activity
CBI29_00595	COG1136	(ABC) transporter
CBI29_00596	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CBI29_00601	COG0028	Belongs to the TPP enzyme family
CBI29_00602	COG0440	acetolactate synthase activity
CBI29_00608	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CBI29_00611	COG0084	hydrolase, TatD family'
CBI29_00613	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CBI29_00614	COG0583	DNA-binding transcription factor activity
CBI29_00616	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CBI29_00633	COG2205	protein histidine kinase activity
CBI29_00636	COG2132	Multicopper oxidase
CBI29_00640	COG2814	Major facilitator Superfamily
CBI29_00642	COG0697	spore germination
CBI29_00643	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CBI29_00644	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CBI29_00645	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CBI29_00648	COG3622	Belongs to the hyi family
CBI29_00649	COG2084	Dehydrogenase
CBI29_00650	COG1024	Enoyl-CoA hydratase
CBI29_00651	COG2205	protein histidine kinase activity
CBI29_00651	COG0784	Response regulator, receiver
CBI29_00651	COG5002	protein histidine kinase activity
CBI29_00655	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CBI29_00657	COG3956	TIGRFAM MazG family protein
CBI29_00658	COG1555	photosystem II stabilization
CBI29_00659	COG0617	tRNA 3'-terminal CCA addition
CBI29_00660	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CBI29_00664	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CBI29_00665	COG3028	Belongs to the UPF0307 family
CBI29_00666	COG0318	PFAM AMP-dependent synthetase and ligase
CBI29_00669	COG0625	glutathione transferase activity
CBI29_00670	COG1238	metal cluster binding
CBI29_00673	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CBI29_00677	COG0072	phenylalanine-tRNA ligase activity
CBI29_00682	COG0248	Ppx GppA phosphatase
CBI29_00684	COG0037	tRNA processing
CBI29_00692	COG1764	response to oxidative stress
CBI29_00693	COG1846	Transcriptional regulator
CBI29_00695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CBI29_00704	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CBI29_00705	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CBI29_00706	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CBI29_00708	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CBI29_00718	COG1214	PFAM Peptidase M22, glycoprotease
CBI29_00721	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CBI29_00723	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CBI29_00724	COG0561	phosphatase activity
CBI29_00726	COG2132	Multicopper oxidase
CBI29_00727	COG3667	copper resistance
CBI29_00730	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CBI29_00731	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CBI29_00732	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CBI29_00738	COG1063	alcohol dehydrogenase
CBI29_00739	COG0583	DNA-binding transcription factor activity
CBI29_00740	COG1960	acyl-CoA dehydrogenase activity
CBI29_00741	COG2814	Major facilitator Superfamily
CBI29_00742	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CBI29_00744	COG1053	succinate dehydrogenase
CBI29_00745	COG0583	DNA-binding transcription factor activity
CBI29_00748	COG0583	DNA-binding transcription factor activity
CBI29_00750	COG1473	amidohydrolase
CBI29_00754	COG0583	DNA-binding transcription factor activity
CBI29_00756	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CBI29_00757	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CBI29_00758	COG1309	transcriptional regulator
CBI29_00764	COG0384	phenazine biosynthesis protein PhzF
CBI29_00766	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CBI29_00769	COG0745	RESPONSE REGULATOR receiver
CBI29_00770	COG2205	protein histidine kinase activity
CBI29_00777	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CBI29_00783	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CBI29_00784	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CBI29_00789	COG0583	DNA-binding transcription factor activity
CBI29_00793	COG0668	transmembrane transport
CBI29_00795	COG2081	HI0933 family
CBI29_00796	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CBI29_00802	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CBI29_00802	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CBI29_00804	COG0489	protein tyrosine kinase activity
CBI29_00814	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CBI29_00816	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CBI29_00819	COG0730	response to heat
CBI29_00821	COG1196	nuclear chromosome segregation
CBI29_00825	COG2223	nitrite transmembrane transporter activity
CBI29_00826	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CBI29_00827	COG1877	trehalose-phosphatase activity
CBI29_00828	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CBI29_00828	COG2226	methyltransferase
CBI29_00828	COG0596	Alpha beta hydrolase
CBI29_00831	COG4106	trans-aconitate 2-methyltransferase activity
CBI29_00834	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CBI29_00835	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CBI29_00836	COG0009	L-threonylcarbamoyladenylate synthase
CBI29_00837	COG3101	peptidyl-lysine hydroxylation
CBI29_00838	COG1399	metal-binding, possibly nucleic acid-binding protein
CBI29_00843	COG1652	LysM domain
CBI29_00844	COG0352	thiamine-phosphate diphosphorylase activity
CBI29_00844	COG0351	phosphomethylpyrimidine kinase
CBI29_00844	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CBI29_00846	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CBI29_00852	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CBI29_00857	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CBI29_00860	COG0358	DNA primase activity
CBI29_00862	COG0564	pseudouridine synthase activity
CBI29_00867	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CBI29_00870	COG0583	DNA-binding transcription factor activity
CBI29_00871	COG0473	3-isopropylmalate dehydrogenase activity
CBI29_00875	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_00879	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CBI29_00879	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CBI29_00891	COG0456	acetyltransferase
CBI29_00893	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CBI29_00894	COG0492	ferredoxin-NADP+ reductase activity
CBI29_00895	COG1674	ftsk spoiiie
CBI29_00895	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CBI29_00896	COG1280	lysine exporter protein (LysE YggA)
CBI29_00899	COG2894	cell division
CBI29_00902	COG0204	Acyl-transferase
CBI29_00903	COG2885	chlorophyll binding
CBI29_00904	COG0210	DNA helicase
CBI29_00906	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CBI29_00909	COG0121	glutamine amidotransferase
CBI29_00913	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CBI29_00914	COG0735	belongs to the Fur family
CBI29_00919	COG0420	3'-5' exonuclease activity
CBI29_00923	COG1090	epimerase
CBI29_00926	COG2050	protein possibly involved in aromatic compounds catabolism
CBI29_00928	COG2814	Major facilitator Superfamily
CBI29_00929	COG0405	Gamma-glutamyltransferase
CBI29_00931	COG0582	viral genome integration into host DNA
CBI29_00949	COG0084	hydrolase, TatD family'
CBI29_00954	COG0477	Major facilitator Superfamily
CBI29_00955	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CBI29_00957	COG1595	DNA-templated transcription, initiation
CBI29_00968	COG0531	amino acid
CBI29_00969	COG2040	homocysteine
CBI29_00974	COG1309	transcriptional regulator
CBI29_00975	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CBI29_00976	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CBI29_00978	COG1607	acyl-coa hydrolase
CBI29_00980	COG0523	cobalamin synthesis protein
CBI29_00982	COG4681	YaeQ
CBI29_00984	COG0726	polysaccharide deacetylase
CBI29_00984	COG1649	PFAM Uncharacterised BCR, COG1649
CBI29_00985	COG1215	transferase activity, transferring glycosyl groups
CBI29_00987	COG1024	Enoyl-CoA hydratase
CBI29_00990	COG1414	Transcriptional regulator
CBI29_00994	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_00996	COG0446	pyridine nucleotide-disulphide oxidoreductase
CBI29_00997	COG2271	Major facilitator Superfamily
CBI29_00999	COG2267	carboxylic ester hydrolase activity
CBI29_01000	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01003	COG0028	Belongs to the TPP enzyme family
CBI29_01005	COG0477	Major facilitator Superfamily
CBI29_01007	COG0242	peptide deformylase activity
CBI29_01008	COG2066	Belongs to the glutaminase family
CBI29_01009	COG2207	Transcriptional regulator
CBI29_01010	COG2223	nitrite transmembrane transporter activity
CBI29_01013	COG0583	DNA-binding transcription factor activity
CBI29_01014	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01015	COG2271	Major facilitator Superfamily
CBI29_01016	COG3959	Transketolase, thiamine diphosphate binding domain
CBI29_01017	COG3958	Transketolase
CBI29_01019	COG0306	phosphate transporter
CBI29_01023	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CBI29_01034	COG4181	ATPase activity
CBI29_01035	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CBI29_01040	COG0583	DNA-binding transcription factor activity
CBI29_01042	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CBI29_01043	COG1773	rubredoxin
CBI29_01053	COG2851	Citrate transporter
CBI29_01054	COG1253	flavin adenine dinucleotide binding
CBI29_01062	COG0804	urea catabolic process
CBI29_01064	COG0830	nickel cation binding
CBI29_01067	COG0742	ribosomal rna small subunit methyltransferase
CBI29_01068	COG0768	penicillin binding
CBI29_01072	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CBI29_01073	COG2878	Part of a membrane complex involved in electron transport
CBI29_01074	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CBI29_01076	COG3384	dioxygenase
CBI29_01079	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CBI29_01086	COG0006	proline dipeptidase activity
CBI29_01087	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CBI29_01088	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CBI29_01092	COG1279	arginine transmembrane transporter activity
CBI29_01093	COG0583	DNA-binding transcription factor activity
CBI29_01101	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CBI29_01102	COG1388	LysM domain
CBI29_01102	COG0741	lytic transglycosylase activity
CBI29_01102	COG1388	LysM domain
CBI29_01102	COG0741	lytic transglycosylase activity
CBI29_01104	COG4174	ABC transporter (Permease)
CBI29_01105	COG4239	(ABC) transporter, permease
CBI29_01106	COG4172	Belongs to the ABC transporter superfamily
CBI29_01116	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CBI29_01118	COG2203	Gaf domain
CBI29_01118	COG5001	Diguanylate cyclase
CBI29_01118	COG4251	negative regulation of phosphorylation
CBI29_01118	COG3706	GGDEF domain
CBI29_01120	COG1902	pentaerythritol trinitrate reductase activity
CBI29_01120	COG0446	pyridine nucleotide-disulphide oxidoreductase
CBI29_01125	COG3501	Rhs element vgr protein
CBI29_01126	COG3209	COG3209 Rhs family protein
CBI29_01134	COG1113	amino acid transport
CBI29_01136	COG0531	amino acid
CBI29_01140	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01144	COG1113	amino acid transport
CBI29_01150	COG0697	spore germination
CBI29_01151	COG2721	sulfolactate sulfo-lyase activity
CBI29_01152	COG2271	Major facilitator Superfamily
CBI29_01153	COG4948	Mandelate Racemase Muconate Lactonizing
CBI29_01155	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01156	COG2186	Transcriptional regulator
CBI29_01161	COG1960	acyl-CoA dehydrogenase activity
CBI29_01163	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01164	COG1024	Enoyl-CoA hydratase
CBI29_01165	COG2814	Major facilitator Superfamily
CBI29_01168	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CBI29_01177	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
CBI29_01178	COG2072	flavoprotein involved in K transport
CBI29_01179	COG0300	oxidoreductase activity
CBI29_01181	COG1309	transcriptional regulator
CBI29_01182	COG1741	Belongs to the pirin family
CBI29_01185	COG2072	flavoprotein involved in K transport
CBI29_01187	COG2252	PERMEase
CBI29_01188	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CBI29_01189	COG3038	cytochrome b561
CBI29_01191	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CBI29_01201	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CBI29_01217	COG1484	DNA-dependent DNA replication
CBI29_01259	COG0592	DNA-directed DNA polymerase activity
CBI29_01274	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CBI29_01279	COG0582	viral genome integration into host DNA
CBI29_01281	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CBI29_01283	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CBI29_01286	COG0667	Aldo Keto reductase
CBI29_01288	COG1765	OsmC-like protein
CBI29_01298	COG2885	chlorophyll binding
CBI29_01300	COG0625	glutathione transferase activity
CBI29_01301	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CBI29_01305	COG3634	alkyl hydroperoxide reductase activity
CBI29_01307	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CBI29_01309	COG0450	alkyl hydroperoxide reductase
CBI29_01310	COG1643	Atp-dependent helicase
CBI29_01313	COG2814	Major facilitator Superfamily
CBI29_01314	COG3135	benzoate transporter
CBI29_01315	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01316	COG0633	Ferredoxin
CBI29_01316	COG0543	2 iron, 2 sulfur cluster binding
CBI29_01317	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
CBI29_01318	COG4638	Rieske (2fe-2S)
CBI29_01319	COG0583	DNA-binding transcription factor activity
CBI29_01330	COG1570	exodeoxyribonuclease VII activity
CBI29_01337	COG1280	lysine exporter protein (LysE YggA)
CBI29_01338	COG1278	Cold shock
CBI29_01345	COG2814	Major facilitator Superfamily
CBI29_01346	COG1733	regulation of RNA biosynthetic process
CBI29_01358	COG5410	chromosome segregation
CBI29_01359	COG3567	Phage-associated protein, HI1409 family
CBI29_01363	COG3566	protein conserved in bacteria
CBI29_01367	COG5434	Belongs to the glycosyl hydrolase 28 family
CBI29_01380	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CBI29_01382	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CBI29_01383	COG1137	ATPase activity
CBI29_01384	COG1538	Outer membrane efflux protein
CBI29_01392	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CBI29_01395	COG1522	sequence-specific DNA binding
CBI29_01396	COG5006	permease, DMT superfamily
CBI29_01399	COG1560	Kdo2-lipid A biosynthetic process
CBI29_01401	COG2814	Major facilitator Superfamily
CBI29_01406	COG1250	3-hydroxyacyl-CoA dehydrogenase
CBI29_01410	COG3501	Rhs element vgr protein
CBI29_01411	COG3209	COG3209 Rhs family protein
CBI29_01414	COG3209	COG3209 Rhs family protein
CBI29_01418	COG0583	DNA-binding transcription factor activity
CBI29_01419	COG1914	H( )-stimulated, divalent metal cation uptake system
CBI29_01423	COG4770	biotin carboxylase activity
CBI29_01424	COG0038	chloride channel
CBI29_01429	COG1309	transcriptional regulator
CBI29_01431	COG1063	alcohol dehydrogenase
CBI29_01434	COG0439	Biotin carboxylase
CBI29_01435	COG2249	NAD(P)H dehydrogenase (quinone) activity
CBI29_01436	COG1733	regulation of RNA biosynthetic process
CBI29_01438	COG0864	Transcriptional regulator
CBI29_01440	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CBI29_01441	COG1116	anion transmembrane transporter activity
CBI29_01454	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CBI29_01454	COG2885	chlorophyll binding
CBI29_01462	COG0583	DNA-binding transcription factor activity
CBI29_01464	COG0590	tRNA wobble adenosine to inosine editing
CBI29_01465	COG2807	transmembrane transport
CBI29_01468	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CBI29_01470	COG0789	Transcriptional regulator
CBI29_01473	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CBI29_01477	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CBI29_01482	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01483	COG0531	amino acid
CBI29_01484	COG1760	l-serine dehydratase
CBI29_01485	COG2030	dehydratase
CBI29_01485	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01486	COG3396	Phenylacetate-CoA oxygenase
CBI29_01487	COG3460	Phenylacetate-CoA oxygenase
CBI29_01488	COG3396	Phenylacetate-CoA oxygenase
CBI29_01489	COG2151	metal-sulfur cluster biosynthetic enzyme
CBI29_01490	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CBI29_01491	COG1024	Enoyl-CoA hydratase
CBI29_01492	COG1024	Enoyl-CoA hydratase
CBI29_01493	COG1250	3-hydroxyacyl-CoA dehydrogenase
CBI29_01494	COG0183	Belongs to the thiolase family
CBI29_01495	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
CBI29_01496	COG3327	negative regulation of DNA-templated transcription, initiation
CBI29_01498	COG2050	protein possibly involved in aromatic compounds catabolism
CBI29_01499	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CBI29_01500	COG0210	DNA helicase
CBI29_01506	COG1278	Cold shock
CBI29_01512	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CBI29_01513	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CBI29_01514	COG2271	Major facilitator Superfamily
CBI29_01515	COG0753	catalase activity
CBI29_01516	COG3038	cytochrome b561
CBI29_01520	COG2267	carboxylic ester hydrolase activity
CBI29_01521	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CBI29_01522	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CBI29_01523	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01524	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CBI29_01526	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_01527	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CBI29_01528	COG0583	DNA-binding transcription factor activity
CBI29_01530	COG1414	Transcriptional regulator
CBI29_01531	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CBI29_01533	COG1840	ABC-type Fe3 transport system, periplasmic component
CBI29_01534	COG3842	ATPase activity
CBI29_01537	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CBI29_01538	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CBI29_01539	COG2814	Major facilitator Superfamily
CBI29_01540	COG1960	acyl-CoA dehydrogenase activity
CBI29_01541	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CBI29_01543	COG1024	Enoyl-CoA hydratase
CBI29_01545	COG2814	Major facilitator Superfamily
CBI29_01547	COG0183	Belongs to the thiolase family
CBI29_01548	COG1250	3-hydroxyacyl-CoA dehydrogenase
CBI29_01549	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01550	COG1024	Enoyl-CoA hydratase
CBI29_01551	COG1960	acyl-CoA dehydrogenase activity
CBI29_01552	COG2814	Major facilitator Superfamily
CBI29_01553	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CBI29_01554	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CBI29_01556	COG2814	Major facilitator Superfamily
CBI29_01558	COG1960	acyl-CoA dehydrogenase activity
CBI29_01561	COG0583	DNA-binding transcription factor activity
CBI29_01564	COG1024	Enoyl-CoA hydratase
CBI29_01565	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CBI29_01566	COG1960	acyl-CoA dehydrogenase activity
CBI29_01567	COG1309	transcriptional regulator
CBI29_01568	COG0318	PFAM AMP-dependent synthetase and ligase
CBI29_01572	COG0583	DNA-binding transcription factor activity
CBI29_01583	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01591	COG2205	protein histidine kinase activity
CBI29_01591	COG0784	Response regulator, receiver
CBI29_01594	COG0765	amino acid transport
CBI29_01595	COG0765	amino acid transport
CBI29_01596	COG1126	abc transporter atp-binding protein
CBI29_01597	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CBI29_01598	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CBI29_01600	COG1280	lysine exporter protein (LysE YggA)
CBI29_01601	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CBI29_01602	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CBI29_01603	COG1045	serine acetyltransferase
CBI29_01606	COG0583	DNA-binding transcription factor activity
CBI29_01607	COG0625	glutathione transferase activity
CBI29_01608	COG0625	glutathione transferase activity
CBI29_01609	COG0583	DNA-binding transcription factor activity
CBI29_01611	COG1346	cytolysis
CBI29_01612	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CBI29_01615	COG2814	Major facilitator Superfamily
CBI29_01617	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
CBI29_01618	COG3052	prosthetic group binding
CBI29_01622	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CBI29_01626	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CBI29_01628	COG1294	oxidase, subunit
CBI29_01629	COG1271	oxidase subunit
CBI29_01633	COG0477	Major facilitator Superfamily
CBI29_01635	COG4521	taurine ABC transporter
CBI29_01636	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CBI29_01637	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CBI29_01638	COG2175	clavaminate synthase activity
CBI29_01640	COG1953	Uracil, thiamine, allantoin
CBI29_01642	COG0583	DNA-binding transcription factor activity
CBI29_01644	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CBI29_01647	COG0640	Transcriptional regulator
CBI29_01648	COG0798	PFAM Bile acid sodium symporter
CBI29_01649	COG0583	DNA-binding transcription factor activity
CBI29_01652	COG3634	alkyl hydroperoxide reductase activity
CBI29_01659	COG1301	dicarboxylic acid transport
CBI29_01660	COG0436	Aminotransferase
CBI29_01662	COG0386	Belongs to the glutathione peroxidase family
CBI29_01670	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CBI29_01675	COG0012	GTP binding
CBI29_01676	COG2011	ABC-type metal ion transport system permease component
CBI29_01677	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CBI29_01679	COG1464	Belongs to the NlpA lipoprotein family
CBI29_01685	COG0765	amino acid transport
CBI29_01686	COG0765	amino acid transport
CBI29_01687	COG1126	abc transporter atp-binding protein
CBI29_01689	COG1522	sequence-specific DNA binding
CBI29_01692	COG1309	transcriptional regulator
CBI29_01697	COG0583	DNA-binding transcription factor activity
CBI29_01699	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CBI29_01701	COG0697	spore germination
CBI29_01706	COG3121	Chaperone
CBI29_01707	COG3539	Fimbrial protein
CBI29_01712	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CBI29_01712	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CBI29_01721	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CBI29_01723	COG2353	YceI-like domain
CBI29_01725	COG3698	Phosphodiester glycosidase
CBI29_01728	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CBI29_01729	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CBI29_01729	COG0506	proline dehydrogenase activity
CBI29_01729	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CBI29_01731	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CBI29_01732	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CBI29_01736	COG1132	(ABC) transporter
CBI29_01737	COG3122	Protein conserved in bacteria
CBI29_01738	COG3619	membrane
CBI29_01740	COG0640	Transcriptional regulator
CBI29_01742	COG2850	peptidyl-arginine hydroxylation
CBI29_01743	COG0424	maF-like protein
CBI29_01747	COG0191	fructose-bisphosphate aldolase activity
CBI29_01748	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CBI29_01751	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CBI29_01753	COG1192	Involved in chromosome partitioning
CBI29_01754	COG1475	DNA binding
CBI29_01755	COG0811	peptide transport
CBI29_01757	COG1132	(ABC) transporter
CBI29_01758	COG1663	tetraacyldisaccharide 4'-kinase activity
CBI29_01762	COG0084	hydrolase, TatD family'
CBI29_01771	COG0590	tRNA wobble adenosine to inosine editing
CBI29_01775	COG0776	regulation of translation
CBI29_01781	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CBI29_01782	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CBI29_01786	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CBI29_01791	COG0339	signal peptide processing
CBI29_01793	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CBI29_01800	COG0702	epimerase
CBI29_01801	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CBI29_01805	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CBI29_01811	COG0316	Belongs to the HesB IscA family
CBI29_01812	COG0822	iron-sulfur transferase activity
CBI29_01817	COG0776	regulation of translation
CBI29_01818	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CBI29_01819	COG2207	Transcriptional regulator
CBI29_01820	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CBI29_01821	COG1960	acyl-CoA dehydrogenase activity
CBI29_01822	COG1960	acyl-CoA dehydrogenase activity
CBI29_01825	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CBI29_01828	COG2814	Major facilitator Superfamily
CBI29_01829	COG4264	IucA IucC family
CBI29_01830	COG4264	IucA IucC family
CBI29_01832	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CBI29_01838	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CBI29_01841	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CBI29_01842	COG0406	alpha-ribazole phosphatase activity
CBI29_01845	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CBI29_01846	COG0730	response to heat
CBI29_01850	COG4773	Receptor
CBI29_01851	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CBI29_01862	COG2226	methyltransferase
CBI29_01867	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CBI29_01874	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CBI29_01876	COG0133	tryptophan synthase activity
CBI29_01879	COG3706	GGDEF domain
CBI29_01882	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CBI29_01883	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CBI29_01884	COG0022	dehydrogenase e1 component
CBI29_01885	COG0508	dehydrogenase complex catalyzes the overall conversion of
CBI29_01886	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CBI29_01888	COG1063	alcohol dehydrogenase
CBI29_01889	COG3781	membrane
CBI29_01891	COG3453	Protein conserved in bacteria
CBI29_01891	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CBI29_01893	COG0730	response to heat
CBI29_01896	COG3708	Transcriptional regulator
CBI29_01896	COG2207	Transcriptional regulator
CBI29_01897	COG1733	regulation of RNA biosynthetic process
CBI29_01898	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CBI29_01903	COG4521	taurine ABC transporter
CBI29_01904	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CBI29_01908	COG0477	Major facilitator Superfamily
CBI29_01910	COG1027	Aspartate ammonia-lyase
CBI29_01913	COG0583	DNA-binding transcription factor activity
CBI29_01914	COG0583	DNA-binding transcription factor activity
CBI29_01915	COG0183	Belongs to the thiolase family
CBI29_01916	COG2031	fatty acid transporter
CBI29_01919	COG0583	DNA-binding transcription factor activity
CBI29_01921	COG2610	gluconate transmembrane transporter activity
CBI29_01922	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01923	COG2207	Transcriptional regulator
CBI29_01925	COG0412	Dienelactone hydrolase
CBI29_01926	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01928	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CBI29_01931	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CBI29_01931	COG0543	2 iron, 2 sulfur cluster binding
CBI29_01932	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
CBI29_01933	COG4638	Rieske (2fe-2S)
CBI29_01935	COG0725	ABC transporter, periplasmic molybdate-binding protein
CBI29_01936	COG4149	molybdate abc transporter
CBI29_01937	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CBI29_01940	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_01941	COG1535	isochorismatase
CBI29_01941	COG3433	isochorismatase activity
CBI29_01953	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CBI29_01956	COG0753	catalase activity
CBI29_01958	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CBI29_01993	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CBI29_01995	COG2072	flavoprotein involved in K transport
CBI29_01997	COG1538	Outer membrane efflux protein
CBI29_01998	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CBI29_01999	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CBI29_02000	COG0745	RESPONSE REGULATOR receiver
CBI29_02001	COG2205	protein histidine kinase activity
CBI29_02003	COG2207	Transcriptional regulator
CBI29_02006	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_02008	COG1073	alpha beta
CBI29_02014	COG0556	nucleotide-excision repair
CBI29_02017	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CBI29_02030	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CBI29_02032	COG2207	Transcriptional regulator
CBI29_02033	COG2084	Dehydrogenase
CBI29_02035	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CBI29_02036	COG0583	DNA-binding transcription factor activity
CBI29_02038	COG0129	dihydroxy-acid dehydratase activity
CBI29_02039	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_02042	COG1566	PFAM secretion protein HlyD family protein
CBI29_02045	COG0583	DNA-binding transcription factor activity
CBI29_02062	COG1473	amidohydrolase
CBI29_02064	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CBI29_02064	COG0475	glutathione-regulated potassium exporter activity
CBI29_02066	COG0583	DNA-binding transcription factor activity
CBI29_02067	COG1335	isochorismatase
CBI29_02072	COG1902	pentaerythritol trinitrate reductase activity
CBI29_02074	COG4689	acetoacetate decarboxylase
CBI29_02075	COG4221	oxidoreductase activity
CBI29_02077	COG1309	transcriptional regulator
CBI29_02085	COG0446	pyridine nucleotide-disulphide oxidoreductase
CBI29_02085	COG1902	pentaerythritol trinitrate reductase activity
CBI29_02088	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_02092	COG2186	Transcriptional regulator
CBI29_02094	COG0583	DNA-binding transcription factor activity
CBI29_02095	COG4948	Mandelate Racemase Muconate Lactonizing
CBI29_02096	COG4829	muconolactone delta-isomerase
CBI29_02098	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CBI29_02099	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CBI29_02100	COG0183	Belongs to the thiolase family
CBI29_02101	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CBI29_02103	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_02105	COG3733	amine oxidase
CBI29_02107	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CBI29_02109	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_02111	COG4638	Rieske (2fe-2S)
CBI29_02115	COG0154	amidase activity
CBI29_02117	COG2814	Major facilitator Superfamily
CBI29_02122	COG1960	acyl-CoA dehydrogenase activity
CBI29_02123	COG0583	DNA-binding transcription factor activity
CBI29_02124	COG1414	Transcriptional regulator
CBI29_02127	COG2391	methyltransferase activity
CBI29_02129	COG4993	Dehydrogenase
CBI29_02130	COG3659	wide pore channel activity
CBI29_02131	COG3420	alginic acid biosynthetic process
CBI29_02132	COG0710	3-dehydroquinate dehydratase activity
CBI29_02133	COG3485	protocatechuate 3,4-dioxygenase
CBI29_02134	COG3485	protocatechuate 3,4-dioxygenase
CBI29_02135	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CBI29_02136	COG2271	Major facilitator Superfamily
CBI29_02137	COG0596	Alpha beta hydrolase
CBI29_02138	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CBI29_02139	COG0183	Belongs to the thiolase family
CBI29_02140	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CBI29_02141	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CBI29_02143	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CBI29_02144	COG2323	membrane
CBI29_02153	COG0446	pyridine nucleotide-disulphide oxidoreductase
CBI29_02153	COG1902	pentaerythritol trinitrate reductase activity
CBI29_02156	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CBI29_02158	COG0542	response to heat
CBI29_02159	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CBI29_02165	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CBI29_02166	COG0569	domain protein
CBI29_02167	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CBI29_02170	COG4774	siderophore transport
CBI29_02171	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CBI29_02173	COG1585	Membrane protein implicated in regulation of membrane protease activity
CBI29_02176	COG1294	oxidase, subunit
CBI29_02177	COG4890	Cyd operon protein YbgT
CBI29_02179	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
CBI29_02181	COG0552	protein localization to endoplasmic reticulum
CBI29_02186	COG0517	IMP dehydrogenase activity
CBI29_02186	COG0516	GMP reductase activity
CBI29_02187	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CBI29_02188	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CBI29_02190	COG0583	DNA-binding transcription factor activity
CBI29_02191	COG0024	Methionine aminopeptidase
CBI29_02197	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CBI29_02197	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CBI29_02198	COG1105	Belongs to the carbohydrate kinase PfkB family
CBI29_02199	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CBI29_02199	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CBI29_02199	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CBI29_02203	COG3300	MHYT domain
CBI29_02203	COG5001	Diguanylate cyclase
CBI29_02206	COG2135	peptidase activity
CBI29_02207	COG0659	secondary active sulfate transmembrane transporter activity
CBI29_02210	COG1113	amino acid transport
CBI29_02212	COG1522	sequence-specific DNA binding
CBI29_02217	COG1011	Hydrolase
CBI29_02218	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CBI29_02220	COG2137	regulation of response to DNA damage stimulus
CBI29_02222	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CBI29_02229	COG0575	Belongs to the CDS family
CBI29_02230	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CBI29_02234	COG3852	Histidine kinase
CBI29_02235	COG2204	response regulator
CBI29_02246	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CBI29_02247	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CBI29_02251	COG0697	spore germination
CBI29_02254	COG0303	'Molybdopterin
CBI29_02255	COG0521	Mo-molybdopterin cofactor biosynthetic process
CBI29_02255	COG0315	cyclic pyranopterin monophosphate synthase activity
CBI29_02258	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CBI29_02259	COG0243	molybdopterin cofactor binding
CBI29_02261	COG0243	molybdopterin cofactor binding
CBI29_02262	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CBI29_02263	COG2146	nitrite reductase [NAD(P)H] activity
CBI29_02263	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CBI29_02265	COG0745	RESPONSE REGULATOR receiver
CBI29_02266	COG1116	anion transmembrane transporter activity
CBI29_02266	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CBI29_02269	COG0511	ligase activity, forming carbon-carbon bonds
CBI29_02272	COG2814	Major facilitator Superfamily
CBI29_02276	COG0069	glutamate synthase activity
CBI29_02280	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CBI29_02282	COG1454	alcohol dehydrogenase
CBI29_02283	COG0824	Thioesterase
CBI29_02286	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CBI29_02292	COG0183	Belongs to the thiolase family
CBI29_02294	COG0583	DNA-binding transcription factor activity
CBI29_02297	COG1522	sequence-specific DNA binding
CBI29_02298	COG3135	benzoate transporter
CBI29_02300	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CBI29_02304	COG0589	response to stress
CBI29_02305	COG0488	(ABC) transporter
CBI29_02309	COG4773	Receptor
CBI29_02315	COG0668	transmembrane transport
CBI29_02317	COG1309	transcriptional regulator
CBI29_02320	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CBI29_02323	COG1605	Chorismate mutase
CBI29_02331	COG0308	aminopeptidase N
CBI29_02336	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CBI29_02337	COG1454	alcohol dehydrogenase
CBI29_02341	COG0531	amino acid
CBI29_02342	COG4303	Ethanolamine ammonia lyase large subunit
CBI29_02343	COG4302	ethanolamine ammonia-lyase activity
CBI29_02344	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CBI29_02344	COG0519	Catalyzes the synthesis of GMP from XMP
CBI29_02350	COG0697	spore germination
CBI29_02351	COG1923	regulation of RNA biosynthetic process
CBI29_02353	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CBI29_02354	COG0802	atpase or kinase
CBI29_02358	COG1187	pseudouridine synthase activity
CBI29_02361	COG0583	DNA-binding transcription factor activity
CBI29_02364	COG2814	Major facilitator Superfamily
CBI29_02365	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CBI29_02370	COG0729	surface antigen
CBI29_02374	COG0174	glutamine synthetase
CBI29_02375	COG0745	RESPONSE REGULATOR receiver
CBI29_02376	COG2205	protein histidine kinase activity
CBI29_02378	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CBI29_02379	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CBI29_02384	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CBI29_02385	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CBI29_02386	COG1960	acyl-CoA dehydrogenase activity
CBI29_02389	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CBI29_02390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CBI29_02394	COG0583	DNA-binding transcription factor activity
CBI29_02397	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CBI29_02399	COG3658	cytochrome
CBI29_02400	COG1215	transferase activity, transferring glycosyl groups
CBI29_02401	COG0726	polysaccharide deacetylase
CBI29_02401	COG1649	PFAM Uncharacterised BCR, COG1649
CBI29_02406	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CBI29_02407	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CBI29_02409	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CBI29_02414	COG0305	Participates in initiation and elongation during chromosome replication
CBI29_02415	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CBI29_02417	COG1305	Transglutaminase-like
CBI29_02419	COG2308	Evidence 4 Homologs of previously reported genes of
CBI29_02425	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CBI29_02426	COG0138	bifunctional purine biosynthesis protein purh
CBI29_02427	COG0151	Belongs to the GarS family
CBI29_02428	COG1464	Belongs to the NlpA lipoprotein family
CBI29_02429	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CBI29_02430	COG2011	ABC-type metal ion transport system permease component
CBI29_02431	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CBI29_02433	COG1301	dicarboxylic acid transport
CBI29_02439	COG1794	racemase activity, acting on amino acids and derivatives
CBI29_02443	COG0745	RESPONSE REGULATOR receiver
CBI29_02444	COG0642	Histidine kinase
CBI29_02445	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CBI29_02447	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CBI29_02455	COG2351	hydroxyisourate hydrolase activity
CBI29_02457	COG3008	intermembrane lipid transfer
CBI29_02457	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CBI29_02458	COG2995	paraquat-inducible protein a
CBI29_02462	COG0477	Major facilitator Superfamily
CBI29_02476	COG2186	Transcriptional regulator
CBI29_02479	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_02481	COG0583	DNA-binding transcription factor activity
CBI29_02483	COG0786	glutamate:sodium symporter activity
CBI29_02484	COG3243	poly(R)-hydroxyalkanoic acid synthase
CBI29_02489	COG3111	PFAM Bacterial OB fold (BOF) protein
CBI29_02508	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CBI29_02509	COG1610	YqeY-like protein
CBI29_02510	COG4783	chaperone-mediated protein folding
CBI29_02515	COG1286	toxin biosynthetic process
CBI29_02521	COG0778	Nitroreductase
CBI29_02523	COG0513	Belongs to the DEAD box helicase family
CBI29_02527	COG2363	Small membrane protein
CBI29_02532	COG1234	tRNA 3'-trailer cleavage
CBI29_02533	COG2195	Cleaves the N-terminal amino acid of tripeptides
CBI29_02535	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CBI29_02537	COG2819	hydrolase of the alpha beta superfamily
CBI29_02538	COG1960	acyl-CoA dehydrogenase activity
CBI29_02539	COG1301	dicarboxylic acid transport
CBI29_02540	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CBI29_02541	COG3139	Protein of unknown function (DUF1315)
CBI29_02542	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CBI29_02543	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CBI29_02545	COG0494	nUDIX hydrolase
CBI29_02547	COG0642	Histidine kinase
CBI29_02548	COG0745	RESPONSE REGULATOR receiver
CBI29_02552	COG1720	tRNA m6t6A37 methyltransferase activity
CBI29_02555	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CBI29_02557	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CBI29_02560	COG4598	ABC transporter
CBI29_02561	COG4160	amino acid transport
CBI29_02562	COG4215	(ABC) transporter
CBI29_02565	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CBI29_02567	COG1538	Outer membrane efflux protein
CBI29_02584	COG0739	heme binding
CBI29_02608	COG5410	chromosome segregation
CBI29_02628	COG0305	Participates in initiation and elongation during chromosome replication
CBI29_02643	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CBI29_02651	COG0582	viral genome integration into host DNA
CBI29_02652	COG1131	(ABC) transporter
CBI29_02653	COG0842	Transport permease protein
CBI29_02656	COG0772	Belongs to the SEDS family
CBI29_02657	COG2951	lytic endotransglycosylase activity
CBI29_02662	COG2207	Transcriptional regulator
CBI29_02665	COG0052	Belongs to the universal ribosomal protein uS2 family
CBI29_02666	COG0024	Methionine aminopeptidase
CBI29_02668	COG2223	nitrite transmembrane transporter activity
CBI29_02671	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CBI29_02672	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CBI29_02673	COG1960	acyl-CoA dehydrogenase activity
CBI29_02676	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CBI29_02677	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CBI29_02678	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CBI29_02682	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CBI29_02683	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CBI29_02684	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CBI29_02691	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CBI29_02694	COG3104	oligopeptide transport
CBI29_02696	COG0512	Glutamine amidotransferase of anthranilate synthase
CBI29_02697	COG0308	aminopeptidase N
CBI29_02703	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CBI29_02709	COG3739	integral membrane protein
CBI29_02712	COG1169	isochorismate synthase
CBI29_02714	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
CBI29_02716	COG1132	(ABC) transporter
CBI29_02719	COG1535	isochorismatase
CBI29_02719	COG3433	isochorismatase activity
CBI29_02720	COG1021	2,3-dihydroxybenzoate-AMP ligase
CBI29_02721	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CBI29_02723	COG4774	siderophore transport
CBI29_02724	COG4607	ABC-type enterochelin transport system periplasmic component
CBI29_02725	COG4604	ABC transporter, ATP-binding protein
CBI29_02726	COG4605	iron ion homeostasis
CBI29_02727	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CBI29_02730	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CBI29_02733	COG2964	Protein conserved in bacteria
CBI29_02735	COG1741	Belongs to the pirin family
CBI29_02746	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CBI29_02746	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CBI29_02747	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CBI29_02750	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CBI29_02751	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CBI29_02752	COG0006	proline dipeptidase activity
CBI29_02753	COG0583	DNA-binding transcription factor activity
CBI29_02755	COG2879	small protein
CBI29_02756	COG1966	Carbon starvation protein
CBI29_02760	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CBI29_02765	COG1067	ATP-dependent peptidase activity
CBI29_02766	COG0583	DNA-binding transcription factor activity
CBI29_02771	COG1686	Belongs to the peptidase S11 family
CBI29_02772	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CBI29_02779	COG0616	signal peptide processing
CBI29_02780	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CBI29_02782	COG0573	inorganic phosphate transmembrane transporter activity
CBI29_02783	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CBI29_02784	COG1113	amino acid transport
CBI29_02785	COG3961	Belongs to the TPP enzyme family
CBI29_02786	COG1522	sequence-specific DNA binding
CBI29_02788	COG0076	glutamate decarboxylase activity
CBI29_02789	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CBI29_02791	COG1309	transcriptional regulator
CBI29_02794	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CBI29_02801	COG0352	thiamine-phosphate diphosphorylase activity
CBI29_02806	COG1203	CRISPR-associated helicase, Cas3
CBI29_02812	COG0612	Peptidase, M16
CBI29_02815	COG0583	DNA-binding transcription factor activity
CBI29_02816	COG0477	Major facilitator Superfamily
CBI29_02821	COG1187	pseudouridine synthase activity
CBI29_02824	COG1686	Belongs to the peptidase S11 family
CBI29_02825	COG1252	NADH dehydrogenase
CBI29_02827	COG0415	Belongs to the DNA photolyase family
CBI29_02830	COG1215	transferase activity, transferring glycosyl groups
CBI29_02836	COG2070	2-Nitropropane dioxygenase
CBI29_02847	COG0556	nucleotide-excision repair
CBI29_02856	COG4221	oxidoreductase activity
CBI29_02858	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CBI29_02859	COG1381	Involved in DNA repair and RecF pathway recombination
CBI29_02861	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CBI29_02864	COG0681	Belongs to the peptidase S26 family
CBI29_02867	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CBI29_02871	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CBI29_02872	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CBI29_02873	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CBI29_02875	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CBI29_02876	COG4208	sulfate ABC transporter
CBI29_02877	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CBI29_02878	COG0583	DNA-binding transcription factor activity
CBI29_02879	COG4625	pathogenesis
CBI29_02882	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CBI29_02885	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CBI29_02887	COG1051	belongs to the nudix hydrolase family
CBI29_02887	COG1056	cytidyltransferase-related domain
CBI29_02888	COG1024	Enoyl-CoA hydratase
CBI29_02889	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CBI29_02891	COG2814	Major facilitator Superfamily
CBI29_02892	COG0047	phosphoribosylformylglycinamidine synthase activity
CBI29_02892	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CBI29_02896	COG1473	amidohydrolase
CBI29_02897	COG0824	Thioesterase
CBI29_02901	COG0823	Involved in the tonB-independent uptake of proteins
CBI29_02905	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CBI29_02912	COG0628	permease
CBI29_02914	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CBI29_02915	COG0596	Alpha beta hydrolase
CBI29_02916	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CBI29_02916	COG0616	signal peptide processing
CBI29_02918	COG0658	competence protein
CBI29_02918	COG2333	competence protein COMEC
CBI29_02919	COG1136	(ABC) transporter
CBI29_02920	COG4591	ABC-type transport system involved in lipoprotein release permease component
CBI29_02927	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CBI29_02931	COG0463	Glycosyl transferase, family 2
CBI29_02937	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CBI29_02938	COG1280	lysine exporter protein (LysE YggA)
CBI29_02939	COG2267	carboxylic ester hydrolase activity
CBI29_02941	COG0019	diaminopimelate decarboxylase activity
CBI29_02943	COG1113	amino acid transport
CBI29_02946	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
CBI29_02948	COG3339	Conserved Protein
CBI29_02949	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CBI29_02950	COG0243	molybdopterin cofactor binding
CBI29_02951	COG1929	Belongs to the glycerate kinase type-1 family
CBI29_02954	COG0778	Nitroreductase
CBI29_02961	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CBI29_02964	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CBI29_02968	COG0741	lytic transglycosylase activity
CBI29_02972	COG0584	glycerophosphoryl diester phosphodiesterase
CBI29_02973	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CBI29_02978	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CBI29_02982	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CBI29_02983	COG0477	Major facilitator Superfamily
CBI29_02993	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CBI29_02994	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CBI29_02999	COG0505	Belongs to the CarA family
CBI29_03003	COG0589	response to stress
CBI29_03006	COG2843	Capsule synthesis protein
CBI29_03011	COG2321	neutral zinc metallopeptidase
CBI29_03012	COG2354	Protein conserved in bacteria
CBI29_03018	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CBI29_03021	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CBI29_03022	COG1053	succinate dehydrogenase
CBI29_03023	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CBI29_03024	COG2009	succinate dehydrogenase
CBI29_03031	COG2921	Belongs to the UPF0250 family
CBI29_03032	COG0321	lipoyl(octanoyl) transferase activity
CBI29_03035	COG0531	amino acid
CBI29_03037	COG1733	regulation of RNA biosynthetic process
CBI29_03038	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CBI29_03039	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CBI29_03039	COG1648	precorrin-2 dehydrogenase activity
CBI29_03042	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CBI29_03047	COG0671	phosphoesterase, PA-phosphatase related
CBI29_03048	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CBI29_03050	COG1538	Outer membrane efflux protein
CBI29_03051	COG0393	Putative heavy-metal-binding
CBI29_03052	COG0393	Putative heavy-metal-binding
CBI29_03054	COG1028	Short-chain dehydrogenase reductase Sdr
CBI29_03056	COG0525	valine-tRNA ligase activity
CBI29_03060	COG0583	DNA-binding transcription factor activity
CBI29_03061	COG0004	ammonium transporteR
CBI29_03063	COG0642	Histidine kinase
CBI29_03064	COG0745	RESPONSE REGULATOR receiver
CBI29_03065	COG2194	sulfuric ester hydrolase activity
CBI29_03069	COG1752	Esterase of the alpha-beta hydrolase superfamily
CBI29_03072	COG2315	Protein conserved in bacteria
CBI29_03073	COG0142	geranyltranstransferase activity
CBI29_03074	COG2828	Protein conserved in bacteria
CBI29_03075	COG1113	amino acid transport
CBI29_03077	COG0582	viral genome integration into host DNA
CBI29_03161	COG2207	Transcriptional regulator
CBI29_03166	COG2249	NAD(P)H dehydrogenase (quinone) activity
CBI29_03170	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CBI29_03172	COG1530	ribonuclease E activity
CBI29_03173	COG0424	maF-like protein
CBI29_03174	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CBI29_03175	COG1792	Involved in formation and maintenance of cell shape
CBI29_03176	COG1077	Cell shape determining protein MreB Mrl
CBI29_03177	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CBI29_03179	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CBI29_03184	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CBI29_03185	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CBI29_03186	COG1752	Esterase of the alpha-beta hydrolase superfamily
CBI29_03187	COG1115	amino acid carrier protein
CBI29_03190	COG2814	Major facilitator Superfamily
CBI29_03191	COG1289	transmembrane transporter activity
CBI29_03201	COG1376	ErfK ybiS ycfS ynhG family protein
CBI29_03202	COG2832	Protein of unknown function (DUF454)
CBI29_03204	COG5510	response to toxic substance
CBI29_03207	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CBI29_03210	COG0840	transmembrane signaling receptor activity
CBI29_03218	COG3422	double-strand break repair
CBI29_03219	COG2824	Alkylphosphonate utilization operon protein PhnA
CBI29_03220	COG3189	MarR family transcriptional regulator
CBI29_03222	COG0354	folic acid binding
CBI29_03223	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CBI29_03225	COG0679	Auxin Efflux Carrier
CBI29_03226	COG1902	pentaerythritol trinitrate reductase activity
CBI29_03227	COG4772	TonB-dependent receptor
CBI29_03228	COG2094	Belongs to the DNA glycosylase MPG family
CBI29_03234	COG2233	PERMEase
CBI29_03236	COG0833	amino acid
CBI29_03237	COG1690	Belongs to the RtcB family
CBI29_03239	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CBI29_03239	COG2885	chlorophyll binding
CBI29_03241	COG0183	Belongs to the thiolase family
CBI29_03245	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CBI29_03249	COG2207	Transcriptional regulator
CBI29_03250	COG0183	Belongs to the thiolase family
CBI29_03254	COG2153	protein acetylation
CBI29_03257	COG1272	protein, Hemolysin III
CBI29_03258	COG0477	Major facilitator Superfamily
CBI29_03261	COG0450	alkyl hydroperoxide reductase
CBI29_03265	COG0285	dihydrofolate synthase activity
CBI29_03272	COG0133	tryptophan synthase activity
CBI29_03275	COG2096	Adenosyltransferase
CBI29_03279	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CBI29_03280	COG0745	RESPONSE REGULATOR receiver
CBI29_03281	COG2205	protein histidine kinase activity
CBI29_03283	COG1960	acyl-CoA dehydrogenase activity
CBI29_03284	COG1960	acyl-CoA dehydrogenase activity
CBI29_03297	COG0438	transferase activity, transferring glycosyl groups
CBI29_03298	COG0463	Glycosyl transferase, family 2
CBI29_03299	COG0726	polysaccharide deacetylase
CBI29_03303	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CBI29_03304	COG2205	protein histidine kinase activity
CBI29_03305	COG4695	Portal protein
CBI29_03331	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CBI29_03333	COG3646	Phage regulatory protein
CBI29_03342	COG0629	single-stranded DNA binding
CBI29_03343	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CBI29_03352	COG1862	Preprotein translocase
CBI29_03355	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CBI29_03357	COG3781	membrane
CBI29_03358	COG0613	PHP domain protein
CBI29_03360	COG2350	Protein conserved in bacteria
CBI29_03366	COG1607	acyl-coa hydrolase
CBI29_03369	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CBI29_03369	COG3453	Protein conserved in bacteria
CBI29_03375	COG2199	diguanylate cyclase activity
CBI29_03377	COG1408	metallophosphoesterase
CBI29_03378	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CBI29_03380	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CBI29_03384	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CBI29_03385	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CBI29_03388	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CBI29_03390	COG2969	positive regulation of protein catabolic process
CBI29_03394	COG1960	acyl-CoA dehydrogenase activity
CBI29_03395	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CBI29_03398	COG1309	transcriptional regulator
CBI29_03399	COG1960	acyl-CoA dehydrogenase activity
CBI29_03405	COG1183	phosphatidylcholine synthase activity
CBI29_03406	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CBI29_03412	COG1196	nuclear chromosome segregation
CBI29_03412	COG0741	lytic transglycosylase activity
CBI29_03412	COG0739	heme binding
CBI29_03414	COG1702	phosphate starvation-inducible protein PhoH
CBI29_03421	COG1295	ribonuclease BN
CBI29_03422	COG0697	spore germination
CBI29_03423	COG2169	Transcriptional regulator
CBI29_03424	COG0179	Fumarylacetoacetate (FAA) hydrolase
CBI29_03433	COG0557	exoribonuclease II activity
CBI29_03434	COG0339	signal peptide processing
CBI29_03435	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CBI29_03442	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CBI29_03443	COG1960	acyl-CoA dehydrogenase activity
CBI29_03448	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CBI29_03450	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CBI29_03474	COG0626	cystathionine gamma-synthase activity
CBI29_03475	COG0433	COG0433 Predicted ATPase
CBI29_03476	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CBI29_03476	COG1017	nitric oxide dioxygenase activity
CBI29_03477	COG1959	2 iron, 2 sulfur cluster binding
CBI29_03480	COG1301	dicarboxylic acid transport
CBI29_03481	COG1946	Acyl-CoA thioesterase
CBI29_03485	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CBI29_03486	COG1040	competence protein
CBI29_03487	COG0494	nUDIX hydrolase
CBI29_03489	COG0598	Magnesium transport protein CorA
CBI29_03491	COG2854	intermembrane phospholipid transfer
CBI29_03493	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CBI29_03494	COG1127	ABC transporter
CBI29_03496	COG0513	Belongs to the DEAD box helicase family
CBI29_03500	COG0408	coproporphyrinogen oxidase activity
CBI29_03503	COG1960	acyl-CoA dehydrogenase activity
CBI29_03505	COG1983	PspC domain protein
CBI29_03506	COG0517	IMP dehydrogenase activity
CBI29_03516	COG0583	DNA-binding transcription factor activity
CBI29_03524	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_03526	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CBI29_03527	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CBI29_03528	COG0833	amino acid
CBI29_03535	COG0628	permease
CBI29_03537	COG1289	transmembrane transporter activity
CBI29_03540	COG2249	NAD(P)H dehydrogenase (quinone) activity
CBI29_03541	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CBI29_03543	COG0277	FAD linked oxidase domain protein
CBI29_03544	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CBI29_03549	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CBI29_03550	COG5380	lipid catabolic process
CBI29_03554	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CBI29_03564	COG0194	GDP metabolic process
CBI29_03566	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CBI29_03570	COG3307	-O-antigen
CBI29_03573	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CBI29_03574	COG1704	LemA family
CBI29_03576	COG0493	'glutamate synthase
CBI29_03577	COG0070	glutamate synthase
CBI29_03577	COG0069	glutamate synthase activity
CBI29_03577	COG0067	glutamate synthase
CBI29_03587	COG2226	methyltransferase
CBI29_03590	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CBI29_03591	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CBI29_03600	COG0833	amino acid
CBI29_03613	COG0488	(ABC) transporter
CBI29_03615	COG4221	oxidoreductase activity
CBI29_03616	COG0659	secondary active sulfate transmembrane transporter activity
CBI29_03618	COG0745	RESPONSE REGULATOR receiver
CBI29_03620	COG0427	acetyl-CoA hydrolase
CBI29_03626	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CBI29_03634	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CBI29_03645	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CBI29_03647	COG2249	NAD(P)H dehydrogenase (quinone) activity
CBI29_03648	COG1733	regulation of RNA biosynthetic process
CBI29_03651	COG1733	regulation of RNA biosynthetic process
CBI29_03655	COG0667	Aldo Keto reductase
CBI29_03659	COG0583	DNA-binding transcription factor activity
CBI29_03660	COG2814	Major facilitator Superfamily
CBI29_03667	COG1335	isochorismatase
CBI29_03669	COG1012	belongs to the aldehyde dehydrogenase family
CBI29_03670	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CBI29_03672	COG1113	amino acid transport
CBI29_03674	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CBI29_03677	COG2814	Major facilitator Superfamily
CBI29_03679	COG0352	thiamine-phosphate diphosphorylase activity
CBI29_03679	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CBI29_03679	COG0351	phosphomethylpyrimidine kinase
CBI29_03683	COG1309	transcriptional regulator
CBI29_03684	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CBI29_03685	COG3706	GGDEF domain
CBI29_03687	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CBI29_03689	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CBI29_03690	COG3162	membrane
CBI29_03691	COG0784	Response regulator, receiver
CBI29_03691	COG2198	Histidine kinase
CBI29_03691	COG2205	protein histidine kinase activity
CBI29_03696	COG1522	sequence-specific DNA binding
CBI29_03697	COG1335	isochorismatase
CBI29_03698	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CBI29_03700	COG0668	transmembrane transport
CBI29_03701	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CBI29_03702	COG1519	Transferase
CBI29_03703	COG1902	pentaerythritol trinitrate reductase activity
CBI29_03708	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CBI29_03713	COG0426	domain, Protein
CBI29_03713	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CBI29_03714	COG4774	siderophore transport
CBI29_03715	COG2119	membrane
CBI29_03717	COG0508	dehydrogenase complex catalyzes the overall conversion of
CBI29_03719	COG4942	peptidase
CBI29_03722	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CBI29_03724	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CBI29_03728	COG0189	ligase activity
CBI29_03732	COG0708	Exodeoxyribonuclease III
CBI29_03733	COG1393	Belongs to the ArsC family
CBI29_03736	COG3706	GGDEF domain
CBI29_03743	COG2351	hydroxyisourate hydrolase activity
CBI29_03744	COG2233	PERMEase
CBI29_03746	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CBI29_03748	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
CBI29_03750	COG3150	esterase
CBI29_03756	COG3409	Peptidoglycan-binding domain 1 protein
CBI29_03756	COG5632	N-Acetylmuramoyl-L-alanine amidase
CBI29_03756	COG1388	LysM domain
CBI29_03757	COG3501	Rhs element vgr protein
CBI29_03759	COG2918	glutathione biosynthetic process
CBI29_03762	COG2733	membrane
CBI29_03763	COG0436	Aminotransferase
CBI29_03764	COG0534	Mate efflux family protein
CBI29_03781	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CBI29_03782	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CBI29_03784	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CBI29_03789	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CBI29_03792	COG0010	Belongs to the arginase family
CBI29_03798	COG2188	Transcriptional regulator
CBI29_03800	COG0523	cobalamin synthesis protein
CBI29_03802	COG1113	amino acid transport
CBI29_03804	COG0625	glutathione transferase activity
CBI29_03808	COG1683	Conserved Protein
CBI29_03809	COG0534	Mate efflux family protein
CBI29_03810	COG0385	Bile acid
CBI29_03811	COG1335	isochorismatase
CBI29_03812	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CBI29_03816	COG2116	formate transmembrane transporter activity
CBI29_03817	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CBI29_03818	COG2133	pyrroloquinoline quinone binding
CBI29_03819	COG2983	Belongs to the UPF0260 family
CBI29_03823	COG1194	a g-specific adenine glycosylase
CBI29_03826	COG2818	Glycosylase
CBI29_03827	COG1064	alcohol dehydrogenase
CBI29_03828	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CBI29_03830	COG0583	DNA-binding transcription factor activity
CBI29_03831	COG0656	L-ascorbic acid biosynthetic process
CBI29_03832	COG2814	Major facilitator Superfamily
CBI29_03839	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CBI29_03842	COG2233	PERMEase
CBI29_03843	COG0583	DNA-binding transcription factor activity
CBI29_03848	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CBI29_03850	COG0733	neurotransmitter:sodium symporter activity
CBI29_04102	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CBI29_04412	COG1525	nuclease
CBI29_04425	COG1475	DNA binding
CBI29_04429	COG3853	Toxic anion resistance protein (TelA)
CBI29_04451	COG0484	heat shock protein binding
CBI29_04468	COG0589	response to stress
CBI29_04469	COG0659	secondary active sulfate transmembrane transporter activity
CBI29_04472	COG1002	Type II restriction enzyme, methylase subunits
CBI29_04473	COG1061	Type III restriction enzyme res subunit
CBI29_04489	COG0741	lytic transglycosylase activity
CBI29_04495	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process