CBI29_00014 SM00382 ATPases associated with a variety of cellular activities CBI29_00017 SM00387 Histidine kinase-like ATPases CBI29_00017 SM00433 TopoisomeraseII CBI29_00019 SM00480 DNA polymerase III beta subunit CBI29_00020 SM00382 ATPases associated with a variety of cellular activities CBI29_00020 SM00760 Bacterial dnaA protein helix-turn-helix domain CBI29_00023 SM01234 CBI29_00023 CBI29_00037 SM00014 Acid phosphatase homologues CBI29_00041 SM01001 AIR carboxylase CBI29_00046 SM00235 Zinc-dependent metalloprotease CBI29_00047 SM00235 Zinc-dependent metalloprotease CBI29_00051 SM00849 Metallo-beta-lactamase superfamily CBI29_00058 SM00248 ankyrin repeats CBI29_00063 SM00904 Riboflavin kinase CBI29_00067 SM00382 ATPases associated with a variety of cellular activities CBI29_00070 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_00071 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_00087 SM00644 CBI29_00087 CBI29_00092 SM00226 Low molecular weight phosphatase family CBI29_00094 SM00984 UDP binding domain CBI29_00109 SM00984 UDP binding domain CBI29_00114 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_00114 SM00895 CBI29_00114 CBI29_00118 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_00118 SM00895 CBI29_00118 CBI29_00133 SM00344 helix_turn_helix ASNC type CBI29_00135 SM01005 Alanine racemase, C-terminal domain CBI29_00149 SM00421 helix_turn_helix, Lux Regulon CBI29_00152 SM00823 Phosphopantetheine attachment site CBI29_00152 SM01294 CBI29_00152 CBI29_00153 SM00823 Phosphopantetheine attachment site CBI29_00153 SM00824 Thioesterase CBI29_00176 SM00836 DALR anticodon binding domain CBI29_00176 SM01016 Arginyl tRNA synthetase N terminal dom CBI29_00177 SM00919 Malic enzyme, NAD binding domain CBI29_00177 SM01274 CBI29_00177 CBI29_00181 SM00382 ATPases associated with a variety of cellular activities CBI29_00191 SM00382 ATPases associated with a variety of cellular activities CBI29_00195 SM00342 helix_turn_helix, arabinose operon control protein CBI29_00215 SM00422 helix_turn_helix, mercury resistance CBI29_00217 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_00221 SM00641 Glycosyl hydrolases family 25 CBI29_00224 SM01091 Transporter associated domain CBI29_00228 SM00434 DNA Topoisomerase IV CBI29_00236 SM01130 CBI29_00236 CBI29_00237 SM01007 Class II Aldolase and Adducin N-terminal domain CBI29_00238 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_00242 SM00382 ATPases associated with a variety of cellular activities CBI29_00249 SM00226 Low molecular weight phosphatase family CBI29_00250 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CBI29_00253 SM00422 helix_turn_helix, mercury resistance CBI29_00258 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CBI29_00258 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CBI29_00258 SM00493 CBI29_00258 CBI29_00266 SM00422 helix_turn_helix, mercury resistance CBI29_00270 SM00422 helix_turn_helix, mercury resistance CBI29_00275 SM01059 Chloramphenicol acetyltransferase CBI29_00278 SM00857 Resolvase, N terminal domain CBI29_00281 SM00857 Resolvase, N terminal domain CBI29_00293 SM00857 Resolvase, N terminal domain CBI29_00295 SM00422 helix_turn_helix, mercury resistance CBI29_00304 SM00938 Nitrogen regulatory protein P-II CBI29_00317 SM00245 tail specific protease CBI29_00318 SM00382 ATPases associated with a variety of cellular activities CBI29_00318 SM00448 cheY-homologous receiver domain CBI29_00319 SM00387 Histidine kinase-like ATPases CBI29_00319 SM00388 His Kinase A (phosphoacceptor) domain CBI29_00320 SM00421 helix_turn_helix, Lux Regulon CBI29_00320 SM00448 cheY-homologous receiver domain CBI29_00326 SM00899 CBI29_00326 CBI29_00344 SM00448 cheY-homologous receiver domain CBI29_00344 SM00850 LytTr DNA-binding domain CBI29_00350 SM00528 Domain in histone-like proteins of HNS family CBI29_00352 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CBI29_00354 SM00240 Forkhead associated domain CBI29_00364 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CBI29_00364 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CBI29_00365 SM00649 Ribosomal protein L11/L12 CBI29_00370 SM00663 RNA polymerase I subunit A N-terminus CBI29_00378 SM00387 Histidine kinase-like ATPases CBI29_00383 SM00422 helix_turn_helix, mercury resistance CBI29_00391 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CBI29_00391 SM00465 GIY-YIG type nucleases (URI domain) CBI29_00394 SM00342 helix_turn_helix, arabinose operon control protein CBI29_00396 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_00400 SM00732 Likely ribonuclease with RNase H fold. CBI29_00403 SM00028 Tetratricopeptide repeats CBI29_00405 SM00967 RNA 2'-O ribose methyltransferase substrate binding CBI29_00417 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_00438 SM00382 ATPases associated with a variety of cellular activities CBI29_00440 SM01387 CBI29_00440 CBI29_00441 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_00441 SM00322 K homology RNA-binding domain CBI29_00444 SM00271 DnaJ molecular chaperone homology domain CBI29_00448 SM00487 DEAD-like helicases superfamily CBI29_00448 SM00490 helicase superfamily c-terminal domain CBI29_00454 SM00116 Domain in cystathionine beta-synthase and other proteins. CBI29_00454 SM01091 Transporter associated domain CBI29_00462 SM00849 Metallo-beta-lactamase superfamily CBI29_00475 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_00481 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_00482 SM00363 S4 RNA-binding domain CBI29_00490 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CBI29_00498 SM01329 CBI29_00498 CBI29_00501 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_00502 SM00342 helix_turn_helix, arabinose operon control protein CBI29_00504 SM00870 CBI29_00504 CBI29_00507 SM00859 Semialdehyde dehydrogenase, NAD binding domain CBI29_00513 SM00382 ATPases associated with a variety of cellular activities CBI29_00515 SM00829 Enoylreductase CBI29_00518 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CBI29_00518 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CBI29_00518 SM00493 CBI29_00518 CBI29_00522 SM00360 RNA recognition motif CBI29_00550 SM00671 Sel1-like repeats. CBI29_00553 SM00917 LeuA allosteric (dimerisation) domain CBI29_00554 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CBI29_00558 SM00382 ATPases associated with a variety of cellular activities CBI29_00558 SM00994 ClpX C4-type zinc finger CBI29_00558 SM01086 C-terminal, D2-small domain, of ClpB protein CBI29_00573 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CBI29_00573 SM00245 tail specific protease CBI29_00575 SM00014 Acid phosphatase homologues CBI29_00577 SM00562 CBI29_00577 CBI29_00579 SM00028 Tetratricopeptide repeats CBI29_00584 SM00564 beta-propeller repeat CBI29_00589 SM00450 Rhodanese Homology Domain CBI29_00591 SM00479 CBI29_00591 CBI29_00595 SM00382 ATPases associated with a variety of cellular activities CBI29_00604 SM00052 Putative diguanylate phosphodiesterase CBI29_00604 SM00267 diguanylate cyclase CBI29_00607 SM01236 CBI29_00607 CBI29_00632 SM00746 metallochaperone-like domain CBI29_00633 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CBI29_00633 SM00387 Histidine kinase-like ATPases CBI29_00633 SM00388 His Kinase A (phosphoacceptor) domain CBI29_00634 SM00448 cheY-homologous receiver domain CBI29_00634 SM00862 Transcriptional regulatory protein, C terminal CBI29_00638 SM00530 Helix-turn-helix XRE-family like proteins CBI29_00643 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CBI29_00643 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CBI29_00651 SM00073 Histidine Phosphotransfer domain CBI29_00651 SM00387 Histidine kinase-like ATPases CBI29_00651 SM00388 His Kinase A (phosphoacceptor) domain CBI29_00651 SM00448 cheY-homologous receiver domain CBI29_00655 SM00954 Region found in RelA / SpoT proteins CBI29_00658 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CBI29_00667 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CBI29_00677 SM00873 B3/4 domain CBI29_00677 SM00874 tRNA synthetase B5 domain CBI29_00677 SM00896 Ferredoxin-fold anticodon binding domain CBI29_00678 SM00411 bacterial (prokaryotic) histone like domain CBI29_00680 SM00357 Cold shock protein domain CBI29_00680 SM00382 ATPases associated with a variety of cellular activities CBI29_00680 SM00959 Rho termination factor, N-terminal domain CBI29_00684 SM00977 TilS substrate C-terminal domain CBI29_00687 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CBI29_00687 SM00474 3'-5' exonuclease CBI29_00687 SM00475 5'-3' exonuclease CBI29_00687 SM00482 DNA polymerase A domain CBI29_00691 SM00382 ATPases associated with a variety of cellular activities CBI29_00693 SM00347 helix_turn_helix multiple antibiotic resistance protein CBI29_00697 SM00331 Sigma factor PP2C-like phosphatases CBI29_00751 SM00342 helix_turn_helix, arabinose operon control protein CBI29_00757 SM00903 Flavin reductase like domain CBI29_00769 SM00448 cheY-homologous receiver domain CBI29_00769 SM00862 Transcriptional regulatory protein, C terminal CBI29_00770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CBI29_00770 SM00387 Histidine kinase-like ATPases CBI29_00770 SM00388 His Kinase A (phosphoacceptor) domain CBI29_00772 SM00267 diguanylate cyclase CBI29_00777 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CBI29_00778 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CBI29_00778 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CBI29_00787 SM00357 Cold shock protein domain CBI29_00816 SM00382 ATPases associated with a variety of cellular activities CBI29_00816 SM00962 SRP54-type protein, GTPase domain CBI29_00816 SM00963 SRP54-type protein, helical bundle domain CBI29_00820 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_00822 SM00771 ZipA, C-terminal domain (FtsZ-binding) CBI29_00823 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CBI29_00823 SM00292 breast cancer carboxy-terminal domain CBI29_00823 SM00532 Ligase N family CBI29_00833 SM00363 S4 RNA-binding domain CBI29_00840 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CBI29_00841 SM00822 CBI29_00841 CBI29_00843 SM00257 Lysin motif CBI29_00852 SM01400 CBI29_00852 CBI29_00858 SM00028 Tetratricopeptide repeats CBI29_00860 SM00400 zinc finger CBI29_00860 SM00493 CBI29_00860 CBI29_00862 SM00363 S4 RNA-binding domain CBI29_00871 SM01329 CBI29_00871 CBI29_00883 SM00825 Beta-ketoacyl synthase CBI29_00887 SM00838 Elongation factor G C-terminus CBI29_00887 SM00889 Elongation factor G, domain IV CBI29_00895 SM00843 CBI29_00895 CBI29_00902 SM00563 Phosphate acyltransferases CBI29_00916 SM00382 ATPases associated with a variety of cellular activities CBI29_00925 SM01004 Delta-aminolevulinic acid dehydratase CBI29_00935 SM01040 BRO family, N-terminal domain CBI29_00955 SM01130 CBI29_00955 CBI29_00959 SM00965 Secretin and TonB N terminus short domain CBI29_00982 SM01322 CBI29_00982 CBI29_00990 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_01009 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01014 SM00822 CBI29_01014 CBI29_01017 SM00861 Transketolase, pyrimidine binding domain CBI29_01018 SM01018 B12 binding domain CBI29_01032 SM00947 Carbonic anhydrase CBI29_01034 SM00382 ATPases associated with a variety of cellular activities CBI29_01054 SM01091 Transporter associated domain CBI29_01063 SM00988 UreE urease accessory protein, N-terminal domain CBI29_01072 SM00478 endonuclease III CBI29_01074 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CBI29_01078 SM00382 ATPases associated with a variety of cellular activities CBI29_01078 SM00464 Found in ATP-dependent protease La (LON) CBI29_01086 SM01011 Aminopeptidase P, N-terminal domain CBI29_01090 SM00422 helix_turn_helix, mercury resistance CBI29_01101 SM00479 CBI29_01101 CBI29_01102 SM00257 Lysin motif CBI29_01106 SM00382 ATPases associated with a variety of cellular activities CBI29_01116 SM00479 CBI29_01116 CBI29_01118 SM00267 diguanylate cyclase CBI29_01138 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01138 SM00895 CBI29_01138 CBI29_01141 SM00344 helix_turn_helix ASNC type CBI29_01149 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01151 SM00858 CBI29_01151 CBI29_01153 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CBI29_01154 SM01130 CBI29_01154 CBI29_01156 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01156 SM00895 CBI29_01156 CBI29_01166 SM00347 helix_turn_helix multiple antibiotic resistance protein CBI29_01167 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01167 SM00895 CBI29_01167 CBI29_01176 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01201 SM00479 CBI29_01201 CBI29_01217 SM00382 ATPases associated with a variety of cellular activities CBI29_01221 SM00530 Helix-turn-helix XRE-family like proteins CBI29_01263 SM00487 DEAD-like helicases superfamily CBI29_01280 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CBI29_01281 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CBI29_01283 SM00788 Adenylosuccinate synthetase CBI29_01287 SM00100 Cyclic nucleotide-monophosphate binding domain CBI29_01287 SM00419 helix_turn_helix, cAMP Regulatory protein CBI29_01291 SM00382 ATPases associated with a variety of cellular activities CBI29_01291 SM01086 C-terminal, D2-small domain, of ClpB protein CBI29_01294 SM00981 CBI29_01294 CBI29_01310 SM00382 ATPases associated with a variety of cellular activities CBI29_01310 SM00487 DEAD-like helicases superfamily CBI29_01310 SM00490 helicase superfamily c-terminal domain CBI29_01310 SM00847 Helicase associated domain (HA2) Add an annotation CBI29_01322 SM00422 helix_turn_helix, mercury resistance CBI29_01333 SM00530 Helix-turn-helix XRE-family like proteins CBI29_01338 SM00357 Cold shock protein domain CBI29_01366 SM00060 Fibronectin type 3 domain CBI29_01367 SM00710 Parallel beta-helix repeats CBI29_01378 SM00840 CBI29_01378 CBI29_01379 SM00116 Domain in cystathionine beta-synthase and other proteins. CBI29_01383 SM00382 ATPases associated with a variety of cellular activities CBI29_01385 SM00382 ATPases associated with a variety of cellular activities CBI29_01394 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CBI29_01394 SM00534 ATPase domain of DNA mismatch repair MUTS family CBI29_01395 SM00344 helix_turn_helix ASNC type CBI29_01398 SM00052 Putative diguanylate phosphodiesterase CBI29_01422 SM00796 Allophanate hydrolase subunit 1 CBI29_01422 SM00797 Allophanate hydrolase subunit 2 CBI29_01423 SM00878 Biotin carboxylase C-terminal domain CBI29_01425 SM00671 Sel1-like repeats. CBI29_01431 SM00829 Enoylreductase CBI29_01434 SM00796 Allophanate hydrolase subunit 1 CBI29_01434 SM00797 Allophanate hydrolase subunit 2 CBI29_01434 SM00878 Biotin carboxylase C-terminal domain CBI29_01441 SM00382 ATPases associated with a variety of cellular activities CBI29_01456 SM00382 ATPases associated with a variety of cellular activities CBI29_01456 SM01086 C-terminal, D2-small domain, of ClpB protein CBI29_01463 SM00248 ankyrin repeats CBI29_01470 SM00422 helix_turn_helix, mercury resistance CBI29_01473 SM01130 CBI29_01473 CBI29_01475 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01475 SM00895 CBI29_01475 CBI29_01480 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01506 SM00357 Cold shock protein domain CBI29_01515 SM01060 CBI29_01515 CBI29_01518 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01518 SM00895 CBI29_01518 CBI29_01521 SM00903 Flavin reductase like domain CBI29_01530 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_01532 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01532 SM00866 CBI29_01532 CBI29_01534 SM00382 ATPases associated with a variety of cellular activities CBI29_01542 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_01546 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_01553 SM00882 Coenzyme A transferase CBI29_01554 SM00882 Coenzyme A transferase CBI29_01563 SM00878 Biotin carboxylase C-terminal domain CBI29_01581 SM01236 CBI29_01581 CBI29_01582 SM01060 CBI29_01582 CBI29_01585 SM00384 DNA binding domain with preference for A/T rich regions CBI29_01589 SM00344 helix_turn_helix ASNC type CBI29_01591 SM00387 Histidine kinase-like ATPases CBI29_01591 SM00388 His Kinase A (phosphoacceptor) domain CBI29_01591 SM00448 cheY-homologous receiver domain CBI29_01592 SM00421 helix_turn_helix, Lux Regulon CBI29_01592 SM00448 cheY-homologous receiver domain CBI29_01596 SM00382 ATPases associated with a variety of cellular activities CBI29_01597 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_01598 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_01604 SM00450 Rhodanese Homology Domain CBI29_01605 SM00822 CBI29_01605 CBI29_01612 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01622 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CBI29_01626 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01635 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_01636 SM00382 ATPases associated with a variety of cellular activities CBI29_01641 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01641 SM00895 CBI29_01641 CBI29_01647 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CBI29_01657 SM00481 DNA polymerase alpha chain like domain CBI29_01658 SM00870 CBI29_01658 CBI29_01663 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01666 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CBI29_01673 SM00100 Cyclic nucleotide-monophosphate binding domain CBI29_01673 SM00419 helix_turn_helix, cAMP Regulatory protein CBI29_01677 SM00382 ATPases associated with a variety of cellular activities CBI29_01677 SM00930 CBI29_01677 CBI29_01684 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_01687 SM00382 ATPases associated with a variety of cellular activities CBI29_01689 SM00344 helix_turn_helix ASNC type CBI29_01691 SM00563 Phosphate acyltransferases CBI29_01693 SM01236 CBI29_01693 CBI29_01710 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_01710 SM00876 Biotin and Thiamin Synthesis associated domain CBI29_01714 SM00530 Helix-turn-helix XRE-family like proteins CBI29_01721 SM00861 Transketolase, pyrimidine binding domain CBI29_01723 SM00867 YceI-like domain CBI29_01730 SM00344 helix_turn_helix ASNC type CBI29_01734 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01736 SM00382 ATPases associated with a variety of cellular activities CBI29_01740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CBI29_01742 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CBI29_01754 SM00470 ParB-like nuclease domain CBI29_01757 SM00382 ATPases associated with a variety of cellular activities CBI29_01769 SM00986 Uracil DNA glycosylase superfamily CBI29_01769 SM00987 UreE urease accessory protein, C-terminal domain CBI29_01774 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_01775 SM00411 bacterial (prokaryotic) histone like domain CBI29_01777 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CBI29_01780 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01794 SM00382 ATPases associated with a variety of cellular activities CBI29_01805 SM00487 DEAD-like helicases superfamily CBI29_01805 SM00490 helicase superfamily c-terminal domain CBI29_01805 SM00982 CBI29_01805 CBI29_01805 SM01058 CarD-like/TRCF domain CBI29_01807 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CBI29_01810 SM00271 DnaJ molecular chaperone homology domain CBI29_01817 SM00411 bacterial (prokaryotic) histone like domain CBI29_01819 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01837 SM01006 Siderophore biosynthesis protein domain CBI29_01842 SM00855 Phosphoglycerate mutase family CBI29_01857 SM01324 CBI29_01857 CBI29_01867 SM00493 CBI29_01867 CBI29_01868 SM00341 Helicase and RNase D C-terminal CBI29_01868 SM00474 3'-5' exonuclease CBI29_01874 SM00382 ATPases associated with a variety of cellular activities CBI29_01879 SM00267 diguanylate cyclase CBI29_01882 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_01884 SM00861 Transketolase, pyrimidine binding domain CBI29_01888 SM00829 Enoylreductase CBI29_01890 SM00382 ATPases associated with a variety of cellular activities CBI29_01891 SM00849 Metallo-beta-lactamase superfamily CBI29_01896 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01900 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_01900 SM00866 CBI29_01900 CBI29_01905 SM00382 ATPases associated with a variety of cellular activities CBI29_01906 SM00567 E-Z type HEAT repeats CBI29_01917 SM00882 Coenzyme A transferase CBI29_01918 SM00882 Coenzyme A transferase CBI29_01923 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01928 SM00903 Flavin reductase like domain CBI29_01930 SM00342 helix_turn_helix, arabinose operon control protein CBI29_01937 SM00382 ATPases associated with a variety of cellular activities CBI29_01948 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_01953 SM00155 Phospholipase D. Active site motifs. CBI29_01958 SM00829 Enoylreductase CBI29_02000 SM00448 cheY-homologous receiver domain CBI29_02000 SM00862 Transcriptional regulatory protein, C terminal CBI29_02001 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CBI29_02001 SM00387 Histidine kinase-like ATPases CBI29_02001 SM00388 His Kinase A (phosphoacceptor) domain CBI29_02003 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02005 SM00822 CBI29_02005 CBI29_02006 SM00822 CBI29_02006 CBI29_02014 SM00487 DEAD-like helicases superfamily CBI29_02014 SM00490 helicase superfamily c-terminal domain CBI29_02025 SM00421 helix_turn_helix, Lux Regulon CBI29_02030 SM01400 CBI29_02030 CBI29_02032 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02048 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_02048 SM00866 CBI29_02048 CBI29_02055 SM00860 SMI1 / KNR4 family CBI29_02076 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02082 SM00422 helix_turn_helix, mercury resistance CBI29_02092 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_02092 SM00895 CBI29_02092 CBI29_02095 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CBI29_02098 SM00882 Coenzyme A transferase CBI29_02099 SM00882 Coenzyme A transferase CBI29_02106 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02107 SM00903 Flavin reductase like domain CBI29_02116 SM00347 helix_turn_helix multiple antibiotic resistance protein CBI29_02120 SM00855 Phosphoglycerate mutase family CBI29_02124 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_02125 SM00849 Metallo-beta-lactamase superfamily CBI29_02129 SM00564 beta-propeller repeat CBI29_02131 SM00710 Parallel beta-helix repeats CBI29_02138 SM00998 Adenylosuccinate lyase C-terminus CBI29_02140 SM00882 Coenzyme A transferase CBI29_02141 SM00882 Coenzyme A transferase CBI29_02145 SM01192 CBI29_02145 CBI29_02145 SM01193 CBI29_02145 CBI29_02158 SM00382 ATPases associated with a variety of cellular activities CBI29_02158 SM01086 C-terminal, D2-small domain, of ClpB protein CBI29_02161 SM00859 Semialdehyde dehydrogenase, NAD binding domain CBI29_02169 SM01264 CBI29_02169 CBI29_02181 SM00382 ATPases associated with a variety of cellular activities CBI29_02181 SM00962 SRP54-type protein, GTPase domain CBI29_02181 SM00963 SRP54-type protein, helical bundle domain CBI29_02186 SM00116 Domain in cystathionine beta-synthase and other proteins. CBI29_02201 SM00347 helix_turn_helix multiple antibiotic resistance protein CBI29_02203 SM00052 Putative diguanylate phosphodiesterase CBI29_02203 SM00091 PAS domain CBI29_02203 SM00267 diguanylate cyclase CBI29_02212 SM00344 helix_turn_helix ASNC type CBI29_02218 SM00363 S4 RNA-binding domain CBI29_02219 SM00382 ATPases associated with a variety of cellular activities CBI29_02225 SM00935 Outer membrane protein (OmpH-like) CBI29_02227 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CBI29_02233 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_02234 SM00091 PAS domain CBI29_02234 SM00387 Histidine kinase-like ATPases CBI29_02234 SM00388 His Kinase A (phosphoacceptor) domain CBI29_02235 SM00382 ATPases associated with a variety of cellular activities CBI29_02235 SM00448 cheY-homologous receiver domain CBI29_02252 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_02254 SM00852 Probable molybdopterin binding domain CBI29_02255 SM00852 Probable molybdopterin binding domain CBI29_02258 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_02259 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CBI29_02261 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CBI29_02265 SM00448 cheY-homologous receiver domain CBI29_02265 SM01012 CBI29_02265 CBI29_02270 SM00878 Biotin carboxylase C-terminal domain CBI29_02273 SM01236 CBI29_02273 CBI29_02280 SM00226 Low molecular weight phosphatase family CBI29_02286 SM00382 ATPases associated with a variety of cellular activities CBI29_02291 SM00822 CBI29_02291 CBI29_02297 SM00344 helix_turn_helix ASNC type CBI29_02300 SM00831 Cation transporter/ATPase, N-terminus CBI29_02305 SM00382 ATPases associated with a variety of cellular activities CBI29_02322 SM00344 helix_turn_helix ASNC type CBI29_02323 SM00830 Chorismate mutase type II CBI29_02327 SM00972 Spore Coat Protein U domain CBI29_02330 SM00972 Spore Coat Protein U domain CBI29_02336 SM00382 ATPases associated with a variety of cellular activities CBI29_02339 SM00862 Transcriptional regulatory protein, C terminal CBI29_02353 SM00853 MutL C terminal dimerisation domain CBI29_02353 SM01340 CBI29_02353 CBI29_02358 SM00363 S4 RNA-binding domain CBI29_02374 SM01230 CBI29_02374 CBI29_02375 SM00448 cheY-homologous receiver domain CBI29_02375 SM00862 Transcriptional regulatory protein, C terminal CBI29_02376 SM00387 Histidine kinase-like ATPases CBI29_02376 SM00388 His Kinase A (phosphoacceptor) domain CBI29_02381 SM00905 Dihydroneopterin aldolase CBI29_02384 SM00903 Flavin reductase like domain CBI29_02387 SM00822 CBI29_02387 CBI29_02388 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02389 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_02392 SM00937 CBI29_02392 CBI29_02415 SM01005 Alanine racemase, C-terminal domain CBI29_02417 SM00460 Transglutaminase/protease-like homologues CBI29_02421 SM01228 CBI29_02421 CBI29_02426 SM00798 AICARFT/IMPCHase bienzyme CBI29_02426 SM00851 MGS-like domain CBI29_02427 SM01209 CBI29_02427 CBI29_02427 SM01210 CBI29_02427 CBI29_02429 SM00382 ATPases associated with a variety of cellular activities CBI29_02429 SM00930 CBI29_02429 CBI29_02431 SM00849 Metallo-beta-lactamase superfamily CBI29_02443 SM00448 cheY-homologous receiver domain CBI29_02443 SM00862 Transcriptional regulatory protein, C terminal CBI29_02444 SM00388 His Kinase A (phosphoacceptor) domain CBI29_02452 SM00387 Histidine kinase-like ATPases CBI29_02452 SM00388 His Kinase A (phosphoacceptor) domain CBI29_02453 SM00448 cheY-homologous receiver domain CBI29_02453 SM00862 Transcriptional regulatory protein, C terminal CBI29_02455 SM00095 Transthyretin CBI29_02466 SM00972 Spore Coat Protein U domain CBI29_02471 SM00972 Spore Coat Protein U domain CBI29_02476 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_02476 SM00895 CBI29_02476 CBI29_02485 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02488 SM01034 Sensors of blue-light using FAD CBI29_02503 SM00220 Serine/Threonine protein kinases, catalytic domain CBI29_02519 SM00855 Phosphoglycerate mutase family CBI29_02523 SM00487 DEAD-like helicases superfamily CBI29_02523 SM00490 helicase superfamily c-terminal domain CBI29_02524 SM00357 Cold shock protein domain CBI29_02536 SM00830 Chorismate mutase type II CBI29_02547 SM00387 Histidine kinase-like ATPases CBI29_02547 SM00388 His Kinase A (phosphoacceptor) domain CBI29_02548 SM00448 cheY-homologous receiver domain CBI29_02548 SM00862 Transcriptional regulatory protein, C terminal CBI29_02550 SM00382 ATPases associated with a variety of cellular activities CBI29_02555 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_02563 SM00062 Bacterial periplasmic substrate-binding proteins CBI29_02570 SM00479 CBI29_02570 CBI29_02628 SM00382 ATPases associated with a variety of cellular activities CBI29_02634 SM00530 Helix-turn-helix XRE-family like proteins CBI29_02652 SM00382 ATPases associated with a variety of cellular activities CBI29_02662 SM00342 helix_turn_helix, arabinose operon control protein CBI29_02672 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_02676 SM00996 S-adenosyl-L-homocysteine hydrolase CBI29_02676 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CBI29_02679 SM00052 Putative diguanylate phosphodiesterase CBI29_02679 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CBI29_02679 SM00091 PAS domain CBI29_02679 SM00267 diguanylate cyclase CBI29_02680 SM00919 Malic enzyme, NAD binding domain CBI29_02680 SM01274 CBI29_02680 CBI29_02682 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CBI29_02693 SM01230 CBI29_02693 CBI29_02701 SM00463 Small MutS-related domain CBI29_02703 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CBI29_02704 SM01092 CO dehydrogenase flavoprotein C-terminal domain CBI29_02715 SM00382 ATPases associated with a variety of cellular activities CBI29_02716 SM00382 ATPases associated with a variety of cellular activities CBI29_02725 SM00382 ATPases associated with a variety of cellular activities CBI29_02757 SM00841 Elongation factor P, C-terminal CBI29_02757 SM01185 CBI29_02757 CBI29_02760 SM00052 Putative diguanylate phosphodiesterase CBI29_02767 SM00257 Lysin motif CBI29_02771 SM00936 Penicillin-binding protein 5, C-terminal domain CBI29_02780 SM00382 ATPases associated with a variety of cellular activities CBI29_02786 SM00344 helix_turn_helix ASNC type CBI29_02797 SM00487 DEAD-like helicases superfamily CBI29_02797 SM00490 helicase superfamily c-terminal domain CBI29_02809 SM00880 CBI29_02809 CBI29_02809 SM01118 CBI29_02809 CBI29_02820 SM01329 CBI29_02820 CBI29_02840 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CBI29_02844 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CBI29_02847 SM00487 DEAD-like helicases superfamily CBI29_02847 SM00490 helicase superfamily c-terminal domain CBI29_02849 SM00267 diguanylate cyclase CBI29_02862 SM00358 Double-stranded RNA binding motif CBI29_02862 SM00535 Ribonuclease III family CBI29_02865 SM00838 Elongation factor G C-terminus CBI29_02867 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CBI29_02877 SM00382 ATPases associated with a variety of cellular activities CBI29_02892 SM01211 CBI29_02892 CBI29_02893 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CBI29_02894 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CBI29_02895 SM00382 ATPases associated with a variety of cellular activities CBI29_02918 SM00849 Metallo-beta-lactamase superfamily CBI29_02919 SM00382 ATPases associated with a variety of cellular activities CBI29_02934 SM00434 DNA Topoisomerase IV CBI29_02935 SM00893 Electron transfer flavoprotein domain CBI29_02936 SM00893 Electron transfer flavoprotein domain CBI29_02944 SM00382 ATPases associated with a variety of cellular activities CBI29_02945 SM00978 CBI29_02945 CBI29_02973 SM00849 Metallo-beta-lactamase superfamily CBI29_02976 SM00883 Chaperonin 10 Kd subunit CBI29_02979 SM00046 Diacylglycerol kinase catalytic domain (presumed) CBI29_02994 SM00382 ATPases associated with a variety of cellular activities CBI29_02996 SM01103 CBI29_02996 CBI29_02999 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CBI29_03000 SM00851 MGS-like domain CBI29_03000 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CBI29_03006 SM00854 Bacterial capsule synthesis protein PGA_cap CBI29_03016 SM00881 CoA binding domain CBI29_03020 SM00861 Transketolase, pyrimidine binding domain CBI29_03027 SM00450 Rhodanese Homology Domain CBI29_03047 SM00014 Acid phosphatase homologues CBI29_03054 SM00822 CBI29_03054 CBI29_03063 SM00387 Histidine kinase-like ATPases CBI29_03063 SM00388 His Kinase A (phosphoacceptor) domain CBI29_03064 SM00448 cheY-homologous receiver domain CBI29_03064 SM00862 Transcriptional regulatory protein, C terminal CBI29_03068 SM00563 Phosphate acyltransferases CBI29_03071 SM00244 prohibitin homologues CBI29_03091 SM01252 CBI29_03091 CBI29_03097 SM00530 Helix-turn-helix XRE-family like proteins CBI29_03123 SM00954 Region found in RelA / SpoT proteins CBI29_03130 SM00990 CBI29_03130 CBI29_03139 SM00382 ATPases associated with a variety of cellular activities CBI29_03160 SM00829 Enoylreductase CBI29_03161 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03165 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03172 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_03179 SM00845 GatB domain CBI29_03207 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_03209 SM00073 Histidine Phosphotransfer domain CBI29_03209 SM00260 Two component signalling adaptor domain CBI29_03209 SM00387 Histidine kinase-like ATPases CBI29_03209 SM00448 cheY-homologous receiver domain CBI29_03209 SM01231 CBI29_03209 CBI29_03210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CBI29_03211 SM00260 Two component signalling adaptor domain CBI29_03212 SM00448 cheY-homologous receiver domain CBI29_03213 SM00448 cheY-homologous receiver domain CBI29_03224 SM00671 Sel1-like repeats. CBI29_03229 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CBI29_03229 SM01232 CBI29_03229 CBI29_03233 SM00838 Elongation factor G C-terminus CBI29_03246 SM00564 beta-propeller repeat CBI29_03249 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03260 SM00957 SecA DEAD-like domain CBI29_03260 SM00958 SecA preprotein cross-linking domain CBI29_03262 SM00849 Metallo-beta-lactamase superfamily CBI29_03268 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03280 SM00448 cheY-homologous receiver domain CBI29_03280 SM00862 Transcriptional regulatory protein, C terminal CBI29_03281 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CBI29_03281 SM00387 Histidine kinase-like ATPases CBI29_03281 SM00388 His Kinase A (phosphoacceptor) domain CBI29_03304 SM00387 Histidine kinase-like ATPases CBI29_03304 SM00388 His Kinase A (phosphoacceptor) domain CBI29_03335 SM00530 Helix-turn-helix XRE-family like proteins CBI29_03343 SM00479 CBI29_03343 CBI29_03352 SM01323 CBI29_03352 CBI29_03358 SM00481 DNA polymerase alpha chain like domain CBI29_03363 SM00450 Rhodanese Homology Domain CBI29_03375 SM00267 diguanylate cyclase CBI29_03378 SM00155 Phospholipase D. Active site motifs. CBI29_03379 SM00563 Phosphate acyltransferases CBI29_03385 SM00650 Ribosomal RNA adenine dimethylases CBI29_03392 SM00878 Biotin carboxylase C-terminal domain CBI29_03407 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CBI29_03413 SM00729 Elongator protein 3, MiaB family, Radical SAM CBI29_03423 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03433 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_03433 SM00955 CBI29_03433 CBI29_03446 SM00662 RNA polymerases D CBI29_03447 SM00363 S4 RNA-binding domain CBI29_03447 SM01390 CBI29_03447 CBI29_03460 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CBI29_03461 SM01374 CBI29_03461 CBI29_03465 SM00322 K homology RNA-binding domain CBI29_03468 SM01382 CBI29_03468 CBI29_03468 SM01383 CBI29_03468 CBI29_03472 SM01403 CBI29_03472 CBI29_03482 SM00563 Phosphate acyltransferases CBI29_03485 SM00487 DEAD-like helicases superfamily CBI29_03485 SM00490 helicase superfamily c-terminal domain CBI29_03494 SM00382 ATPases associated with a variety of cellular activities CBI29_03496 SM00487 DEAD-like helicases superfamily CBI29_03496 SM00490 helicase superfamily c-terminal domain CBI29_03498 SM00861 Transketolase, pyrimidine binding domain CBI29_03506 SM00116 Domain in cystathionine beta-synthase and other proteins. CBI29_03527 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CBI29_03564 SM00072 Guanylate kinase homologues. CBI29_03565 SM01409 CBI29_03565 CBI29_03566 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CBI29_03566 SM00954 Region found in RelA / SpoT proteins CBI29_03581 SM00965 Secretin and TonB N terminus short domain CBI29_03585 SM00842 Cell division protein FtsA CBI29_03613 SM00382 ATPases associated with a variety of cellular activities CBI29_03616 SM00947 Carbonic anhydrase CBI29_03617 SM00316 Ribosomal protein S1-like RNA-binding domain CBI29_03617 SM00732 Likely ribonuclease with RNase H fold. CBI29_03618 SM00448 cheY-homologous receiver domain CBI29_03618 SM00862 Transcriptional regulatory protein, C terminal CBI29_03619 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CBI29_03619 SM00387 Histidine kinase-like ATPases CBI29_03619 SM00388 His Kinase A (phosphoacceptor) domain CBI29_03628 SM00474 3'-5' exonuclease CBI29_03630 SM00530 Helix-turn-helix XRE-family like proteins CBI29_03633 SM00357 Cold shock protein domain CBI29_03637 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03641 SM00477 DNA/RNA non-specific endonuclease CBI29_03641 SM00892 DNA/RNA non-specific endonuclease CBI29_03646 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03654 SM00342 helix_turn_helix, arabinose operon control protein CBI29_03671 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_03673 SM00530 Helix-turn-helix XRE-family like proteins CBI29_03682 SM00829 Enoylreductase CBI29_03685 SM00267 diguanylate cyclase CBI29_03691 SM00387 Histidine kinase-like ATPases CBI29_03691 SM00388 His Kinase A (phosphoacceptor) domain CBI29_03691 SM00448 cheY-homologous receiver domain CBI29_03693 SM00421 helix_turn_helix, Lux Regulon CBI29_03693 SM00448 cheY-homologous receiver domain CBI29_03696 SM00344 helix_turn_helix ASNC type CBI29_03704 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CBI29_03706 SM00937 CBI29_03706 CBI29_03711 SM00116 Domain in cystathionine beta-synthase and other proteins. CBI29_03711 SM01240 CBI29_03711 CBI29_03713 SM00849 Metallo-beta-lactamase superfamily CBI29_03722 SM00864 Tubulin/FtsZ family, GTPase domain CBI29_03722 SM00865 Tubulin/FtsZ family, C-terminal domain CBI29_03723 SM00842 Cell division protein FtsA CBI29_03736 SM00267 diguanylate cyclase CBI29_03749 SM00387 Histidine kinase-like ATPases CBI29_03749 SM00433 TopoisomeraseII CBI29_03756 SM00257 Lysin motif CBI29_03767 SM00448 cheY-homologous receiver domain CBI29_03767 SM00862 Transcriptional regulatory protein, C terminal CBI29_03768 SM00387 Histidine kinase-like ATPases CBI29_03768 SM00388 His Kinase A (phosphoacceptor) domain CBI29_03771 SM00450 Rhodanese Homology Domain CBI29_03786 SM00387 Histidine kinase-like ATPases CBI29_03798 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_03798 SM00866 CBI29_03798 CBI29_03800 SM00833 Cobalamin synthesis protein cobW C-terminal domain CBI29_03806 SM00346 helix_turn_helix isocitrate lyase regulation CBI29_03812 SM01130 CBI29_03812 CBI29_03817 SM00382 ATPases associated with a variety of cellular activities CBI29_03823 SM00478 endonuclease III CBI29_03823 SM00525 CBI29_03823 CBI29_03827 SM00829 Enoylreductase CBI29_03828 SM00345 helix_turn_helix gluconate operon transcriptional repressor CBI29_03836 SM00271 DnaJ molecular chaperone homology domain CBI29_04304 SM00671 Sel1-like repeats. CBI29_04412 SM00318 Staphylococcal nuclease homologues CBI29_04414 SM00528 Domain in histone-like proteins of HNS family CBI29_04425 SM00470 ParB-like nuclease domain CBI29_04442 SM00530 Helix-turn-helix XRE-family like proteins CBI29_04463 SM00382 ATPases associated with a variety of cellular activities CBI29_04486 SM00857 Resolvase, N terminal domain