locus-tag class description AB57_0001 PF00579 tRNA synthetases class I (W and Y) AB57_0002 PF03702 Anhydro-N-acetylmuramic acid kinase AB57_0003 PF00561 alpha/beta hydrolase fold AB57_0004 PF01521 Iron-sulphur cluster biosynthesis AB57_0009 PF00144 Beta-lactamase AB57_0014 PF00005 ABC transporter AB57_0014 PF12848 ABC transporter AB57_0015 PF09335 SNARE associated Golgi protein AB57_0018 PF02463 RecF/RecN/SMC N terminal domain AB57_0019 PF02768 DNA polymerase III beta subunit, C-terminal domain AB57_0019 PF02767 DNA polymerase III beta subunit, central domain AB57_0019 PF00712 DNA polymerase III beta subunit, N-terminal domain AB57_0020 PF11638 DnaA N-terminal domain AB57_0020 PF08299 Bacterial dnaA protein helix-turn-helix AB57_0020 PF00308 Bacterial dnaA protein AB57_0021 PF00468 Ribosomal protein L34 AB57_0022 PF00825 Ribonuclease P AB57_0023 PF01809 Putative membrane protein insertion efficiency factor AB57_0024 PF02096 60Kd inner membrane protein AB57_0024 PF14849 YidC periplasmic domain AB57_0026 PF12631 MnmE helical domain AB57_0026 PF01926 50S ribosome-binding GTPase AB57_0026 PF10396 GTP-binding protein TrmE N-terminus AB57_0027 PF02583 Metal-sensitive transcriptional repressor AB57_0028 PF16916 Dimerisation domain of Zinc Transporter AB57_0028 PF01545 Cation efflux family AB57_0029 PF13098 Thioredoxin-like domain AB57_0029 PF10411 Disulfide bond isomerase protein N-terminus AB57_0031 PF00156 Phosphoribosyl transferase domain AB57_0033 PF01979 Amidohydrolase family AB57_0034 PF00355 Rieske [2Fe-2S] domain AB57_0035 PF03738 Glutathionylspermidine synthase preATP-grasp AB57_0037 PF03741 Integral membrane protein TerC family AB57_0038 PF01569 PAP2 superfamily AB57_0040 PF01225 Mur ligase family, catalytic domain AB57_0040 PF08245 Mur ligase middle domain AB57_0040 PF02875 Mur ligase family, glutamate ligase domain AB57_0042 PF00731 AIR carboxylase AB57_0043 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AB57_0043 PF02222 ATP-grasp domain AB57_0044 PF13406 Transglycosylase SLT domain AB57_0048 PF00012 Hsp70 protein AB57_0049 PF01025 GrpE AB57_0050 PF03466 LysR substrate binding domain AB57_0050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0054 PF07859 alpha/beta hydrolase fold AB57_0055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AB57_0059 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AB57_0060 PF01252 Signal peptidase (SPase) II AB57_0061 PF06827 Zinc finger found in FPG and IleRS AB57_0061 PF00133 tRNA synthetases class I (I, L, M and V) AB57_0061 PF08264 Anticodon-binding domain of tRNA AB57_0062 PF06574 FAD synthetase AB57_0062 PF01687 Riboflavin kinase AB57_0064 PF01048 Phosphorylase superfamily AB57_0065 PF00440 Bacterial regulatory proteins, tetR family AB57_0065 PF08362 YcdC-like protein, C-terminal region AB57_0066 PF00005 ABC transporter AB57_0067 PF00528 Binding-protein-dependent transport system inner membrane component AB57_0068 PF00296 Luciferase-like monooxygenase AB57_0069 PF09084 NMT1/THI5 like AB57_0070 PF09084 NMT1/THI5 like AB57_0071 PF00696 Amino acid kinase family AB57_0071 PF00583 Acetyltransferase (GNAT) family AB57_0074 PF00106 short chain dehydrogenase AB57_0075 PF13419 Haloacid dehalogenase-like hydrolase AB57_0077 PF01323 DSBA-like thioredoxin domain AB57_0078 PF00440 Bacterial regulatory proteins, tetR family AB57_0078 PF08360 QacR-like protein, C-terminal region AB57_0079 PF00440 Bacterial regulatory proteins, tetR family AB57_0080 PF00175 Oxidoreductase NAD-binding domain AB57_0081 PF00487 Fatty acid desaturase AB57_0082 PF01138 3' exoribonuclease family, domain 1 AB57_0082 PF03725 3' exoribonuclease family, domain 2 AB57_0084 PF04185 Phosphoesterase family AB57_0084 PF05506 Domain of unknown function (DUF756) AB57_0085 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AB57_0085 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AB57_0087 PF01510 N-acetylmuramoyl-L-alanine amidase AB57_0090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AB57_0090 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AB57_0117 PF07729 FCD domain AB57_0117 PF00392 Bacterial regulatory proteins, gntR family AB57_0118 PF01070 FMN-dependent dehydrogenase AB57_0119 PF01565 FAD binding domain AB57_0119 PF09330 D-lactate dehydrogenase, membrane binding AB57_0120 PF00155 Aminotransferase class I and II AB57_0121 PF00392 Bacterial regulatory proteins, gntR family AB57_0121 PF07729 FCD domain AB57_0123 PF00285 Citrate synthase, C-terminal domain AB57_0124 PF00694 Aconitase C-terminal domain AB57_0124 PF00330 Aconitase family (aconitate hydratase) AB57_0127 PF13737 Transposase DDE domain AB57_0129 PF00872 Transposase, Mutator family AB57_0132 PF00849 RNA pseudouridylate synthase AB57_0135 PF07715 TonB-dependent Receptor Plug Domain AB57_0135 PF00593 TonB dependent receptor AB57_0137 PF01037 Lrp/AsnC ligand binding domain AB57_0138 PF01266 FAD dependent oxidoreductase AB57_0139 PF00842 Alanine racemase, C-terminal domain AB57_0139 PF01168 Alanine racemase, N-terminal domain AB57_0140 PF01042 Endoribonuclease L-PSP AB57_0141 PF00324 Amino acid permease AB57_0142 PF00324 Amino acid permease AB57_0144 PF00171 Aldehyde dehydrogenase family AB57_0145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AB57_0145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AB57_0146 PF00501 AMP-binding enzyme AB57_0146 PF13193 AMP-binding enzyme C-terminal domain AB57_0147 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_0147 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_0147 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_0148 PF00378 Enoyl-CoA hydratase/isomerase AB57_0149 PF00378 Enoyl-CoA hydratase/isomerase AB57_0150 PF07690 Major Facilitator Superfamily AB57_0150 PF00083 Sugar (and other) transporter AB57_0151 PF00765 Autoinducer synthase AB57_0153 PF00196 Bacterial regulatory proteins, luxR family AB57_0153 PF03472 Autoinducer binding domain AB57_0154 PF00501 AMP-binding enzyme AB57_0155 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_0155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_0155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_0156 PF02801 Beta-ketoacyl synthase, C-terminal domain AB57_0156 PF16197 Ketoacyl-synthetase C-terminal extension AB57_0156 PF08242 Methyltransferase domain AB57_0156 PF00550 Phosphopantetheine attachment site AB57_0156 PF00109 Beta-ketoacyl synthase, N-terminal domain AB57_0156 PF14765 Polyketide synthase dehydratase AB57_0156 PF00975 Thioesterase domain AB57_0157 PF13193 AMP-binding enzyme C-terminal domain AB57_0157 PF00668 Condensation domain AB57_0157 PF00550 Phosphopantetheine attachment site AB57_0157 PF00975 Thioesterase domain AB57_0157 PF00501 AMP-binding enzyme AB57_0160 PF12697 Alpha/beta hydrolase family AB57_0161 PF01648 4'-phosphopantetheinyl transferase superfamily AB57_0162 PF01722 BolA-like protein AB57_0164 PF13614 AAA domain AB57_0167 PF09335 SNARE associated Golgi protein AB57_0168 PF07681 DoxX AB57_0169 PF04286 Protein of unknown function (DUF445) AB57_0170 PF02540 NAD synthase AB57_0170 PF00958 GMP synthase C terminal domain AB57_0170 PF00117 Glutamine amidotransferase class-I AB57_0171 PF01909 Nucleotidyltransferase domain AB57_0171 PF13427 Domain of unknown function (DUF4111) AB57_0172 PF03551 Transcriptional regulator PadR-like family AB57_0174 PF05726 Pirin C-terminal cupin domain AB57_0174 PF02678 Pirin AB57_0178 PF03485 Arginyl tRNA synthetase N terminal domain AB57_0178 PF05746 DALR anticodon binding domain AB57_0178 PF00750 tRNA synthetases class I (R) AB57_0179 PF03949 Malic enzyme, NAD binding domain AB57_0179 PF00390 Malic enzyme, N-terminal domain AB57_0180 PF04261 Dyp-type peroxidase family AB57_0181 PF01810 LysE type translocator AB57_0182 PF00950 ABC 3 transport family AB57_0183 PF00005 ABC transporter AB57_0187 PF00119 ATP synthase A chain AB57_0188 PF00137 ATP synthase subunit C AB57_0189 PF00430 ATP synthase B/B' CF(0) AB57_0190 PF00213 ATP synthase delta (OSCP) subunit AB57_0191 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AB57_0191 PF00306 ATP synthase alpha/beta chain, C terminal domain AB57_0191 PF02874 ATP synthase alpha/beta family, beta-barrel domain AB57_0192 PF00231 ATP synthase AB57_0193 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AB57_0193 PF02874 ATP synthase alpha/beta family, beta-barrel domain AB57_0194 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AB57_0196 PF00255 Glutathione peroxidase AB57_0198 PF07690 Major Facilitator Superfamily AB57_0199 PF00440 Bacterial regulatory proteins, tetR family AB57_0200 PF00892 EamA-like transporter family AB57_0201 PF01300 Telomere recombination AB57_0202 PF02481 DNA recombination-mediator protein A AB57_0202 PF17782 DprA winged helix domain AB57_0204 PF01327 Polypeptide deformylase AB57_0213 PF00291 Pyridoxal-phosphate dependent enzyme AB57_0215 PF03358 NADPH-dependent FMN reductase AB57_0220 PF08497 Radical SAM N-terminal AB57_0220 PF11842 Domain of unknown function (DUF3362) AB57_0220 PF04055 Radical SAM superfamily AB57_0223 PF00817 impB/mucB/samB family AB57_0223 PF11798 IMS family HHH motif AB57_0223 PF11799 impB/mucB/samB family C-terminal domain AB57_0226 PF07690 Major Facilitator Superfamily AB57_0227 PF03641 Possible lysine decarboxylase AB57_0228 PF03741 Integral membrane protein TerC family AB57_0228 PF03471 Transporter associated domain AB57_0229 PF02810 SEC-C motif AB57_0230 PF03458 UPF0126 domain AB57_0231 PF07690 Major Facilitator Superfamily AB57_0233 PF00501 AMP-binding enzyme AB57_0233 PF13193 AMP-binding enzyme C-terminal domain AB57_0236 PF00719 Inorganic pyrophosphatase AB57_0237 PF03573 outer membrane porin, OprD family AB57_0240 PF00701 Dihydrodipicolinate synthetase family AB57_0242 PF00155 Aminotransferase class I and II AB57_0242 PF00392 Bacterial regulatory proteins, gntR family AB57_0243 PF13335 Magnesium chelatase, subunit ChlI C-terminal AB57_0243 PF01078 Magnesium chelatase, subunit ChlI AB57_0251 PF03358 NADPH-dependent FMN reductase AB57_0252 PF01758 Sodium Bile acid symporter family AB57_0254 PF01022 Bacterial regulatory protein, arsR family AB57_0288 PF01636 Phosphotransferase enzyme family AB57_0293 PF13427 Domain of unknown function (DUF4111) AB57_0293 PF01909 Nucleotidyltransferase domain AB57_0294 PF00809 Pterin binding enzyme AB57_0307 PF01078 Magnesium chelatase, subunit ChlI AB57_0307 PF13335 Magnesium chelatase, subunit ChlI C-terminal AB57_0309 PF00543 Nitrogen regulatory protein P-II AB57_0310 PF00909 Ammonium Transporter Family AB57_0311 PF03477 ATP cone domain AB57_0312 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AB57_0312 PF01872 RibD C-terminal domain AB57_0314 PF00677 Lumazine binding domain AB57_0318 PF00883 Cytosol aminopeptidase family, catalytic domain AB57_0318 PF02789 Cytosol aminopeptidase family, N-terminal domain AB57_0320 PF03739 Lipopolysaccharide export system permease LptF/LptG AB57_0321 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AB57_0321 PF01676 Metalloenzyme superfamily AB57_0322 PF00595 PDZ domain AB57_0322 PF03572 Peptidase family S41 AB57_0323 PF00158 Sigma-54 interaction domain AB57_0323 PF02954 Bacterial regulatory protein, Fis family AB57_0323 PF00072 Response regulator receiver domain AB57_0324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_0324 PF00512 His Kinase A (phospho-acceptor) domain AB57_0325 PF00196 Bacterial regulatory proteins, luxR family AB57_0325 PF00072 Response regulator receiver domain AB57_0326 PF00768 D-alanyl-D-alanine carboxypeptidase AB57_0327 PF00291 Pyridoxal-phosphate dependent enzyme AB57_0328 PF01842 ACT domain AB57_0328 PF00742 Homoserine dehydrogenase AB57_0328 PF03447 Homoserine dehydrogenase, NAD binding domain AB57_0329 PF10411 Disulfide bond isomerase protein N-terminus AB57_0329 PF13098 Thioredoxin-like domain AB57_0330 PF02899 Phage integrase, N-terminal SAM-like domain AB57_0330 PF00589 Phage integrase family AB57_0332 PF02421 Ferrous iron transport protein B AB57_0332 PF07670 Nucleoside recognition AB57_0332 PF07664 Ferrous iron transport protein B C terminus AB57_0334 PF08245 Mur ligase middle domain AB57_0334 PF02875 Mur ligase family, glutamate ligase domain AB57_0335 PF01098 Cell cycle protein AB57_0336 PF00749 tRNA synthetases class I (E and Q), catalytic domain AB57_0337 PF01258 Prokaryotic dksA/traR C4-type zinc finger AB57_0338 PF00149 Calcineurin-like phosphoesterase AB57_0339 PF00293 NUDIX domain AB57_0340 PF01964 Radical SAM ThiC family AB57_0340 PF13667 ThiC-associated domain AB57_0343 PF00892 EamA-like transporter family AB57_0344 PF02321 Outer membrane efflux protein AB57_0345 PF01895 PhoU domain AB57_0346 PF04362 Bacterial Fe(2+) trafficking AB57_0347 PF00206 Lyase AB57_0347 PF14698 Argininosuccinate lyase C-terminal AB57_0348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_0348 PF07694 5TMR of 5TMR-LYT AB57_0348 PF06580 Histidine kinase AB57_0349 PF00072 Response regulator receiver domain AB57_0349 PF04397 LytTr DNA-binding domain AB57_0350 PF03900 Porphobilinogen deaminase, C-terminal domain AB57_0350 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AB57_0355 PF00816 H-NS histone family AB57_0358 PF00263 Bacterial type II and III secretion system protein AB57_0358 PF03958 Bacterial type II/III secretion system short domain AB57_0359 PF00498 FHA domain AB57_0359 PF12401 Protein of unknown function (DUF2662) AB57_0360 PF13419 Haloacid dehalogenase-like hydrolase AB57_0361 PF04715 Anthranilate synthase component I, N terminal region AB57_0361 PF00425 chorismate binding enzyme AB57_0362 PF00009 Elongation factor Tu GTP binding domain AB57_0362 PF03143 Elongation factor Tu C-terminal domain AB57_0362 PF03144 Elongation factor Tu domain 2 AB57_0363 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AB57_0364 PF00467 KOW motif AB57_0364 PF02357 Transcription termination factor nusG AB57_0365 PF03946 Ribosomal protein L11, N-terminal domain AB57_0365 PF00298 Ribosomal protein L11, RNA binding domain AB57_0366 PF00687 Ribosomal protein L1p/L10e family AB57_0367 PF00466 Ribosomal protein L10 AB57_0368 PF16320 Ribosomal protein L7/L12 dimerisation domain AB57_0368 PF00542 Ribosomal protein L7/L12 C-terminal domain AB57_0370 PF04998 RNA polymerase Rpb1, domain 5 AB57_0370 PF04997 RNA polymerase Rpb1, domain 1 AB57_0370 PF00623 RNA polymerase Rpb1, domain 2 AB57_0370 PF05000 RNA polymerase Rpb1, domain 4 AB57_0370 PF04983 RNA polymerase Rpb1, domain 3 AB57_0375 PF13726 Na+-H+ antiporter family AB57_0375 PF03553 Na+/H+ antiporter family AB57_0378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_0378 PF00183 Hsp90 protein AB57_0381 PF01323 DSBA-like thioredoxin domain AB57_0383 PF00376 MerR family regulatory protein AB57_0383 PF09278 MerR, DNA binding AB57_0386 PF00108 Thiolase, N-terminal domain AB57_0386 PF02803 Thiolase, C-terminal domain AB57_0387 PF00378 Enoyl-CoA hydratase/isomerase AB57_0387 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AB57_0387 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AB57_0391 PF01541 GIY-YIG catalytic domain AB57_0391 PF02151 UvrB/uvrC motif AB57_0391 PF08459 UvrC Helix-hairpin-helix N-terminal AB57_0393 PF01066 CDP-alcohol phosphatidyltransferase AB57_0394 PF12833 Helix-turn-helix domain AB57_0394 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AB57_0394 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AB57_0394 PF02805 Metal binding domain of Ada AB57_0399 PF13533 Biotin-lipoyl like AB57_0400 PF03652 Holliday junction resolvase AB57_0401 PF02622 Uncharacterized ACR, COG1678 AB57_0402 PF02463 RecF/RecN/SMC N terminal domain AB57_0404 PF06865 Pyrimidine/purine nucleoside phosphorylase AB57_0405 PF00588 SpoU rRNA Methylase family AB57_0405 PF08032 RNA 2'-O ribose methyltransferase substrate binding AB57_0406 PF01121 Dephospho-CoA kinase AB57_0408 PF06750 Bacterial Peptidase A24 N-terminal domain AB57_0408 PF01478 Type IV leader peptidase family AB57_0409 PF00482 Type II secretion system (T2SS), protein F AB57_0410 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AB57_0410 PF00437 Type II/IV secretion system protein AB57_0411 PF00121 Triosephosphate isomerase AB57_0412 PF03840 Preprotein translocase SecG subunit AB57_0413 PF17384 RimP C-terminal SH3 domain AB57_0413 PF02576 RimP N-terminal domain AB57_0414 PF00575 S1 RNA binding domain AB57_0414 PF08529 NusA N-terminal domain AB57_0414 PF13184 NusA-like KH domain AB57_0415 PF00009 Elongation factor Tu GTP binding domain AB57_0415 PF08364 Bacterial translation initiation factor IF-2 associated region AB57_0415 PF11987 Translation-initiation factor 2 AB57_0415 PF04760 Translation initiation factor IF-2, N-terminal region AB57_0416 PF02033 Ribosome-binding factor A AB57_0418 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AB57_0420 PF00361 Proton-conducting membrane transporter AB57_0421 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AB57_0422 PF13244 Domain of unknown function (DUF4040) AB57_0422 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AB57_0422 PF00361 Proton-conducting membrane transporter AB57_0422 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AB57_0425 PF01502 Phosphoribosyl-AMP cyclohydrolase AB57_0426 PF01494 FAD binding domain AB57_0427 PF03109 ABC1 family AB57_0429 PF01209 ubiE/COQ5 methyltransferase family AB57_0434 PF17946 RecC C-terminal domain AB57_0435 PF12705 PD-(D/E)XK nuclease superfamily AB57_0435 PF13361 UvrD-like helicase C-terminal domain AB57_0435 PF00580 UvrD/REP helicase N-terminal domain AB57_0436 PF13538 UvrD-like helicase C-terminal domain AB57_0438 PF00312 Ribosomal protein S15 AB57_0439 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AB57_0439 PF00013 KH domain AB57_0439 PF01138 3' exoribonuclease family, domain 1 AB57_0439 PF03725 3' exoribonuclease family, domain 2 AB57_0439 PF00575 S1 RNA binding domain AB57_0440 PF01544 CorA-like Mg2+ transporter protein AB57_0442 PF00226 DnaJ domain AB57_0442 PF01556 DnaJ C terminal domain AB57_0444 PF01430 Hsp33 protein AB57_0445 PF00999 Sodium/hydrogen exchanger family AB57_0445 PF02254 TrkA-N domain AB57_0446 PF00270 DEAD/DEAH box helicase AB57_0446 PF17764 3′ DNA-binding domain (3′BD) AB57_0446 PF18074 Primosomal protein N C-terminal domain AB57_0446 PF00271 Helicase conserved C-terminal domain AB57_0446 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AB57_0447 PF00482 Type II secretion system (T2SS), protein F AB57_0448 PF07963 Prokaryotic N-terminal methylation motif AB57_0448 PF08334 Type II secretion system (T2SS), protein G AB57_0450 PF01588 Putative tRNA binding domain AB57_0451 PF00795 Carbon-nitrogen hydrolase AB57_0452 PF03471 Transporter associated domain AB57_0452 PF00571 CBS domain AB57_0453 PF01206 Sulfurtransferase TusA AB57_0457 PF01177 Asp/Glu/Hydantoin racemase AB57_0460 PF00762 Ferrochelatase AB57_0461 PF03884 DNA gyrase inhibitor YacG AB57_0462 PF00753 Metallo-beta-lactamase superfamily AB57_0466 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AB57_0468 PF01197 Ribosomal protein L31 AB57_0469 PF03109 ABC1 family AB57_0470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_0470 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AB57_0471 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AB57_0471 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_0471 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_0472 PF01554 MatE AB57_0474 PF06969 HemN C-terminal domain AB57_0474 PF04055 Radical SAM superfamily AB57_0475 PF00106 short chain dehydrogenase AB57_0476 PF03466 LysR substrate binding domain AB57_0476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0477 PF00501 AMP-binding enzyme AB57_0477 PF13193 AMP-binding enzyme C-terminal domain AB57_0478 PF10150 Ribonuclease E/G family AB57_0478 PF00575 S1 RNA binding domain AB57_0478 PF12111 Polyribonucleotide phosphorylase C terminal AB57_0481 PF00849 RNA pseudouridylate synthase AB57_0481 PF01479 S4 domain AB57_0482 PF13419 Haloacid dehalogenase-like hydrolase AB57_0483 PF08279 HTH domain AB57_0483 PF13280 WYL domain AB57_0484 PF02798 Glutathione S-transferase, N-terminal domain AB57_0486 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0486 PF03466 LysR substrate binding domain AB57_0487 PF12706 Beta-lactamase superfamily domain AB57_0488 PF00141 Peroxidase AB57_0489 PF02896 PEP-utilising enzyme, TIM barrel domain AB57_0489 PF00391 PEP-utilising enzyme, mobile domain AB57_0489 PF05524 PEP-utilising enzyme, N-terminal AB57_0489 PF01590 GAF domain AB57_0490 PF00293 NUDIX domain AB57_0492 PF03466 LysR substrate binding domain AB57_0492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0494 PF00330 Aconitase family (aconitate hydratase) AB57_0495 PF00694 Aconitase C-terminal domain AB57_0497 PF00180 Isocitrate/isopropylmalate dehydrogenase AB57_04990 PF00563 EAL domain AB57_04990 PF11809 Domain of unknown function (DUF3330) AB57_0500 PF01176 Translation initiation factor 1A / IF-1 AB57_05015 PF09278 MerR, DNA binding AB57_05015 PF00376 MerR family regulatory protein AB57_0502 PF01416 tRNA pseudouridine synthase AB57_0507 PF02774 Semialdehyde dehydrogenase, dimerisation domain AB57_0507 PF01118 Semialdehyde dehydrogenase, NAD binding domain AB57_0509 PF00375 Sodium:dicarboxylate symporter family AB57_0511 PF03279 Bacterial lipid A biosynthesis acyltransferase AB57_0512 PF01810 LysE type translocator AB57_0518 PF00107 Zinc-binding dehydrogenase AB57_0518 PF08240 Alcohol dehydrogenase GroES-like domain AB57_05180 PF00072 Response regulator receiver domain AB57_05180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AB57_05180 PF01627 Hpt domain AB57_05180 PF00672 HAMP domain AB57_05180 PF00512 His Kinase A (phospho-acceptor) domain AB57_05180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_05185 PF00707 Translation initiation factor IF-3, C-terminal domain AB57_05185 PF05198 Translation initiation factor IF-3, N-terminal domain AB57_0519 PF01638 HxlR-like helix-turn-helix AB57_05205 PF01047 MarR family AB57_0521 PF01396 Topoisomerase DNA binding C4 zinc finger AB57_0521 PF01751 Toprim domain AB57_0521 PF01131 DNA topoisomerase AB57_0521 PF08272 Topoisomerase I zinc-ribbon-like AB57_0524 PF00580 UvrD/REP helicase N-terminal domain AB57_0524 PF13361 UvrD-like helicase C-terminal domain AB57_05245 PF01580 FtsK/SpoIIIE family AB57_05245 PF09397 Ftsk gamma domain AB57_05245 PF17854 FtsK alpha domain AB57_05245 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AB57_0525 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AB57_0529 PF02254 TrkA-N domain AB57_0529 PF00999 Sodium/hydrogen exchanger family AB57_0530 PF00471 Ribosomal protein L33 AB57_0531 PF00830 Ribosomal L28 family AB57_0532 PF00171 Aldehyde dehydrogenase family AB57_0534 PF00551 Formyl transferase AB57_0534 PF01842 ACT domain AB57_0536 PF01618 MotA/TolQ/ExbB proton channel family AB57_0538 PF01625 Peptide methionine sulfoxide reductase AB57_0540 PF00186 Dihydrofolate reductase AB57_0541 PF00303 Thymidylate synthase AB57_0544 PF01790 Prolipoprotein diacylglyceryl transferase AB57_05465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AB57_05465 PF02785 Biotin carboxylase C-terminal domain AB57_05465 PF00289 Biotin carboxylase, N-terminal domain AB57_05515 PF02348 Cytidylyltransferase AB57_05530 PF01638 HxlR-like helix-turn-helix AB57_05545 PF08042 PqqA family AB57_05610 PF06719 AraC-type transcriptional regulator N-terminus AB57_05610 PF12833 Helix-turn-helix domain AB57_05625 PF07715 TonB-dependent Receptor Plug Domain AB57_05625 PF00593 TonB dependent receptor AB57_05635 PF08173 Membrane bound YbgT-like protein AB57_0568 PF00902 Sec-independent protein translocase protein (TatC) AB57_0569 PF02416 mttA/Hcf106 family AB57_0570 PF02416 mttA/Hcf106 family AB57_0572 PF01725 Ham1 family AB57_05735 PF00528 Binding-protein-dependent transport system inner membrane component AB57_0574 PF07021 Methionine biosynthesis protein MetW AB57_0574 PF00561 alpha/beta hydrolase fold AB57_0575 PF00561 alpha/beta hydrolase fold AB57_0576 PF08502 LeuA allosteric (dimerisation) domain AB57_0576 PF00682 HMGL-like AB57_0577 PF18331 PKHD-type hydroxylase C-terminal domain AB57_0577 PF13640 2OG-Fe(II) oxygenase superfamily AB57_0578 PF00593 TonB dependent receptor AB57_0578 PF07715 TonB-dependent Receptor Plug Domain AB57_0579 PF05698 Bacterial trigger factor protein (TF) C-terminus AB57_0579 PF05697 Bacterial trigger factor protein (TF) AB57_0579 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AB57_0580 PF00574 Clp protease AB57_0581 PF07724 AAA domain (Cdc48 subfamily) AB57_0581 PF06689 ClpX C4-type zinc finger AB57_0581 PF10431 C-terminal, D2-small domain, of ClpB protein AB57_0584 PF05681 Fumarate hydratase (Fumerase) AB57_0584 PF05683 Fumarase C-terminus AB57_05840 PF00970 Oxidoreductase FAD-binding domain AB57_05840 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_05840 PF00175 Oxidoreductase NAD-binding domain AB57_0585 PF07085 DRTGG domain AB57_0585 PF01515 Phosphate acetyl/butaryl transferase AB57_05850 PF03441 FAD binding domain of DNA photolyase AB57_05850 PF00875 DNA photolyase AB57_0586 PF00871 Acetokinase family AB57_0587 PF00920 Dehydratase family AB57_0588 PF01081 KDPG and KHG aldolase AB57_0589 PF02447 GntP family permease AB57_0590 PF01202 Shikimate kinase AB57_0591 PF00171 Aldehyde dehydrogenase family AB57_0592 PF00171 Aldehyde dehydrogenase family AB57_0593 PF00561 alpha/beta hydrolase fold AB57_0595 PF00933 Glycosyl hydrolase family 3 N terminal domain AB57_0596 PF11818 C-terminal domain of tail specific protease (DUF3340) AB57_0596 PF17804 Tail specific protease N-terminal domain AB57_0596 PF03572 Peptidase family S41 AB57_0596 PF00595 PDZ domain AB57_05960 PF04093 rod shape-determining protein MreD AB57_05965 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AB57_05965 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AB57_05965 PF06827 Zinc finger found in FPG and IleRS AB57_0597 PF00534 Glycosyl transferases group 1 AB57_0597 PF13439 Glycosyltransferase Family 4 AB57_05970 PF05175 Methyltransferase small domain AB57_05970 PF08468 Methyltransferase small domain N-terminal AB57_0598 PF01569 PAP2 superfamily AB57_0599 PF04384 Iron-sulphur cluster assembly AB57_0600 PF00334 Nucleoside diphosphate kinase AB57_06000 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AB57_0601 PF04055 Radical SAM superfamily AB57_06015 PF01471 Putative peptidoglycan binding domain AB57_06015 PF01476 LysM domain AB57_06015 PF01510 N-acetylmuramoyl-L-alanine amidase AB57_06025 PF04608 Phosphatidylglycerophosphatase A AB57_0603 PF13464 Domain of unknown function (DUF4115) AB57_0604 PF04551 GcpE protein AB57_06040 PF01119 DNA mismatch repair protein, C-terminal domain AB57_06040 PF08676 MutL C terminal dimerisation domain AB57_0605 PF03129 Anticodon binding domain AB57_0605 PF13393 Histidyl-tRNA synthetase AB57_06050 PF00204 DNA gyrase B AB57_06050 PF00986 DNA gyrase B subunit, carboxyl terminus AB57_06050 PF18053 DNA gyrase B subunit insert domain AB57_06050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_06050 PF01751 Toprim domain AB57_06055 PF03023 Lipid II flippase MurJ AB57_06060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AB57_06060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AB57_06065 PF13614 AAA domain AB57_06065 PF02706 Chain length determinant protein AB57_06065 PF13807 G-rich domain on putative tyrosine kinase AB57_0607 PF13360 PQQ-like domain AB57_06070 PF01451 Low molecular weight phosphotyrosine protein phosphatase AB57_06075 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AB57_06075 PF10531 SLBB domain AB57_06075 PF02563 Polysaccharide biosynthesis/export protein AB57_0608 PF01926 50S ribosome-binding GTPase AB57_0608 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AB57_06080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AB57_06080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AB57_06080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AB57_06085 PF01370 NAD dependent epimerase/dehydratase family AB57_06095 PF00534 Glycosyl transferases group 1 AB57_06095 PF13439 Glycosyltransferase Family 4 AB57_0610 PF02556 Preprotein translocase subunit SecB AB57_06105 PF00534 Glycosyl transferases group 1 AB57_06105 PF13439 Glycosyltransferase Family 4 AB57_0611 PF00462 Glutaredoxin AB57_06110 PF00534 Glycosyl transferases group 1 AB57_06115 PF01370 NAD dependent epimerase/dehydratase family AB57_06120 PF00953 Glycosyl transferase family 4 AB57_06125 PF17836 PglD N-terminal domain AB57_06125 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_0613 PF03193 RsgA GTPase AB57_06130 PF02719 Polysaccharide biosynthesis protein AB57_06135 PF16363 GDP-mannose 4,6 dehydratase AB57_0614 PF00929 Exonuclease AB57_06140 PF01757 Acyltransferase family AB57_06145 PF01757 Acyltransferase family AB57_06150 PF00483 Nucleotidyl transferase AB57_06155 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AB57_06155 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AB57_06155 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AB57_06160 PF00342 Phosphoglucose isomerase AB57_06165 PF16363 GDP-mannose 4,6 dehydratase AB57_0617 PF02321 Outer membrane efflux protein AB57_06170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AB57_06170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AB57_06170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AB57_06170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AB57_06175 PF02652 L-lactate permease AB57_0618 PF02687 FtsX-like permease family AB57_0618 PF00005 ABC transporter AB57_0618 PF12704 MacB-like periplasmic core domain AB57_06180 PF03989 DNA gyrase C-terminal domain, beta-propeller AB57_06180 PF00521 DNA gyrase/topoisomerase IV, subunit A AB57_0619 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AB57_06190 PF00665 Integrase core domain AB57_06215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_0622 PF09334 tRNA synthetases class I (M) AB57_0622 PF00133 tRNA synthetases class I (I, L, M and V) AB57_0622 PF08264 Anticodon-binding domain of tRNA AB57_0622 PF13603 Leucyl-tRNA synthetase, Domain 2 AB57_06225 PF03960 ArsC family AB57_06230 PF13411 MerR HTH family regulatory protein AB57_0624 PF00205 Thiamine pyrophosphate enzyme, central domain AB57_0624 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AB57_0624 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AB57_06240 PF01252 Signal peptidase (SPase) II AB57_0625 PF10369 Small subunit of acetolactate synthase AB57_06250 PF01396 Topoisomerase DNA binding C4 zinc finger AB57_06250 PF01131 DNA topoisomerase AB57_06250 PF01751 Toprim domain AB57_0626 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AB57_0626 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AB57_06260 PF00809 Pterin binding enzyme AB57_06265 PF13610 DDE domain AB57_0627 PF00563 EAL domain AB57_0627 PF00990 Diguanylate cyclase, GGDEF domain AB57_0627 PF03707 Bacterial signalling protein N terminal repeat AB57_06270 PF05052 MerE protein AB57_06275 PF13411 MerR HTH family regulatory protein AB57_06280 PF00403 Heavy-metal-associated domain AB57_06280 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_06280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AB57_06285 PF03203 MerC mercury resistance protein AB57_06290 PF00403 Heavy-metal-associated domain AB57_06295 PF02411 MerT mercuric transport protein AB57_06300 PF02909 Tetracyclin repressor-like, C-terminal domain AB57_06300 PF00440 Bacterial regulatory proteins, tetR family AB57_06305 PF07690 Major Facilitator Superfamily AB57_0631 PF00009 Elongation factor Tu GTP binding domain AB57_0631 PF16658 Class II release factor RF3, C-terminal domain AB57_0631 PF03144 Elongation factor Tu domain 2 AB57_06310 PF00892 EamA-like transporter family AB57_06315 PF00302 Chloramphenicol acetyltransferase AB57_06320 PF03400 IS1 transposase AB57_06325 PF01526 Tn3 transposase DDE domain AB57_06325 PF13700 Domain of unknown function (DUF4158) AB57_06330 PF00239 Resolvase, N terminal domain AB57_06330 PF02796 Helix-turn-helix domain of resolvase AB57_06340 PF13610 DDE domain AB57_06345 PF01526 Tn3 transposase DDE domain AB57_06345 PF13700 Domain of unknown function (DUF4158) AB57_0635 PF01026 TatD related DNase AB57_06350 PF02796 Helix-turn-helix domain of resolvase AB57_06350 PF00239 Resolvase, N terminal domain AB57_06355 PF13610 DDE domain AB57_0636 PF00330 Aconitase family (aconitate hydratase) AB57_0636 PF00694 Aconitase C-terminal domain AB57_06360 PF13610 DDE domain AB57_06365 PF13495 Phage integrase, N-terminal SAM-like domain AB57_06365 PF00589 Phage integrase family AB57_0637 PF00899 ThiF family AB57_06370 PF00583 Acetyltransferase (GNAT) family AB57_06375 PF00893 Small Multidrug Resistance protein AB57_06385 PF00239 Resolvase, N terminal domain AB57_06385 PF02796 Helix-turn-helix domain of resolvase AB57_0639 PF03466 LysR substrate binding domain AB57_0639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_06390 PF03743 Bacterial conjugation TrbI-like protein AB57_06395 PF13411 MerR HTH family regulatory protein AB57_06405 PF01252 Signal peptidase (SPase) II AB57_0641 PF01207 Dihydrouridine synthase (Dus) AB57_06415 PF00916 Sulfate permease family AB57_06415 PF01740 STAS domain AB57_06420 PF04563 RNA polymerase beta subunit AB57_06420 PF04561 RNA polymerase Rpb2, domain 2 AB57_06420 PF04565 RNA polymerase Rpb2, domain 3 AB57_06420 PF10385 RNA polymerase beta subunit external 1 domain AB57_06420 PF04560 RNA polymerase Rpb2, domain 7 AB57_06420 PF00562 RNA polymerase Rpb2, domain 6 AB57_06435 PF00905 Penicillin binding protein transpeptidase domain AB57_0644 PF00589 Phage integrase family AB57_06450 PF01740 STAS domain AB57_06450 PF00916 Sulfate permease family AB57_06455 PF00582 Universal stress protein family AB57_06475 PF00665 Integrase core domain AB57_06485 PF00009 Elongation factor Tu GTP binding domain AB57_06485 PF03764 Elongation factor G, domain IV AB57_06485 PF14492 Elongation Factor G, domain II AB57_06485 PF03144 Elongation factor Tu domain 2 AB57_06485 PF00679 Elongation factor G C-terminus AB57_06495 PF06418 CTP synthase N-terminus AB57_06495 PF00117 Glutamine amidotransferase class-I AB57_06500 PF07995 Glucose / Sorbosone dehydrogenase AB57_06505 PF00154 recA bacterial DNA recombination protein AB57_06525 PF00905 Penicillin binding protein transpeptidase domain AB57_06540 PF00521 DNA gyrase/topoisomerase IV, subunit A AB57_06540 PF03989 DNA gyrase C-terminal domain, beta-propeller AB57_06545 PF00118 TCP-1/cpn60 chaperonin family AB57_06550 PF00285 Citrate synthase, C-terminal domain AB57_06555 PF04539 Sigma-70 region 3 AB57_06555 PF04545 Sigma-70, region 4 AB57_06555 PF04542 Sigma-70 region 2 AB57_06555 PF00140 Sigma-70 factor, region 1.2 AB57_06555 PF04546 Sigma-70, non-essential region AB57_06555 PF03979 Sigma-70 factor, region 1.1 AB57_06560 PF03947 Ribosomal Proteins L2, C-terminal domain AB57_06560 PF00181 Ribosomal Proteins L2, RNA binding domain AB57_0659 PF04945 YHS domain AB57_0660 PF00672 HAMP domain AB57_0660 PF00512 His Kinase A (phospho-acceptor) domain AB57_0660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_0661 PF00072 Response regulator receiver domain AB57_0661 PF00486 Transcriptional regulatory protein, C terminal AB57_0663 PF07731 Multicopper oxidase AB57_0663 PF00394 Multicopper oxidase AB57_0663 PF07732 Multicopper oxidase AB57_0667 PF07690 Major Facilitator Superfamily AB57_0669 PF00892 EamA-like transporter family AB57_0670 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AB57_0670 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AB57_0671 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AB57_0672 PF02233 NAD(P) transhydrogenase beta subunit AB57_0673 PF00106 short chain dehydrogenase AB57_0675 PF01261 Xylose isomerase-like TIM barrel AB57_0676 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AB57_0676 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AB57_0677 PF00378 Enoyl-CoA hydratase/isomerase AB57_0680 PF00291 Pyridoxal-phosphate dependent enzyme AB57_0682 PF05958 tRNA (Uracil-5-)-methyltransferase AB57_0683 PF04607 Region found in RelA / SpoT proteins AB57_0683 PF13291 ACT domain AB57_0683 PF02824 TGS domain AB57_0685 PF03819 MazG nucleotide pyrophosphohydrolase domain AB57_0687 PF12626 Polymerase A arginine-rich C-terminus AB57_0687 PF01743 Poly A polymerase head domain AB57_0687 PF12627 Probable RNA and SrmB- binding site of polymerase A AB57_0688 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AB57_0689 PF02548 Ketopantoate hydroxymethyltransferase AB57_0690 PF02569 Pantoate-beta-alanine ligase AB57_0691 PF03668 P-loop ATPase protein family AB57_0692 PF00381 PTS HPr component phosphorylation site AB57_0693 PF04751 Protein of unknown function (DUF615) AB57_0694 PF13193 AMP-binding enzyme C-terminal domain AB57_0694 PF00501 AMP-binding enzyme AB57_0695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AB57_0695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AB57_0695 PF03129 Anticodon binding domain AB57_0695 PF02824 TGS domain AB57_0697 PF02798 Glutathione S-transferase, N-terminal domain AB57_0697 PF00043 Glutathione S-transferase, C-terminal domain AB57_0698 PF09335 SNARE associated Golgi protein AB57_0699 PF07690 Major Facilitator Superfamily AB57_0700 PF01632 Ribosomal protein L35 AB57_0701 PF00453 Ribosomal protein L20 AB57_0704 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AB57_0704 PF01409 tRNA synthetases class II core domain (F) AB57_0705 PF03484 tRNA synthetase B5 domain AB57_0705 PF03483 B3/4 domain AB57_0705 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AB57_0705 PF03147 Ferredoxin-fold anticodon binding domain AB57_0705 PF01588 Putative tRNA binding domain AB57_0706 PF00216 Bacterial DNA-binding protein AB57_0708 PF07498 Rho termination factor, N-terminal domain AB57_0708 PF07497 Rho termination factor, RNA-binding domain AB57_0708 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AB57_0709 PF00085 Thioredoxin AB57_0710 PF02541 Ppx/GppA phosphatase family AB57_0711 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AB57_0712 PF01171 PP-loop family AB57_0712 PF09179 TilS substrate binding domain AB57_0712 PF11734 TilS substrate C-terminal domain AB57_0713 PF14748 Pyrroline-5-carboxylate reductase dimerisation AB57_0713 PF03807 NADP oxidoreductase coenzyme F420-dependent AB57_0714 PF02325 YGGT family AB57_0715 PF00476 DNA polymerase family A AB57_0715 PF01612 3'-5' exonuclease AB57_0715 PF01367 5'-3' exonuclease, C-terminal SAM fold AB57_0715 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AB57_0719 PF00437 Type II/IV secretion system protein AB57_0720 PF02566 OsmC-like protein AB57_0724 PF00795 Carbon-nitrogen hydrolase AB57_0729 PF04963 Sigma-54 factor, core binding domain AB57_0729 PF00309 Sigma-54 factor, Activator interacting domain (AID) AB57_0729 PF04552 Sigma-54, DNA binding domain AB57_0730 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AB57_0731 PF01722 BolA-like protein AB57_0732 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AB57_0733 PF01634 ATP phosphoribosyltransferase AB57_0734 PF00815 Histidinol dehydrogenase AB57_0737 PF00155 Aminotransferase class I and II AB57_0738 PF04715 Anthranilate synthase component I, N terminal region AB57_0738 PF00425 chorismate binding enzyme AB57_0746 PF00293 NUDIX domain AB57_0747 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_0748 PF00814 Glycoprotease family AB57_0749 PF04445 Putative SAM-dependent methyltransferase AB57_0751 PF00756 Putative esterase AB57_0753 PF00834 Ribulose-phosphate 3 epimerase family AB57_0756 PF00394 Multicopper oxidase AB57_0756 PF07732 Multicopper oxidase AB57_0756 PF07731 Multicopper oxidase AB57_0757 PF05275 Copper resistance protein B precursor (CopB) AB57_0759 PF00893 Small Multidrug Resistance protein AB57_0760 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AB57_0760 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AB57_0761 PF01960 ArgJ family AB57_0762 PF02445 Quinolinate synthetase A protein AB57_0763 PF00962 Adenosine/AMP deaminase AB57_0764 PF00107 Zinc-binding dehydrogenase AB57_0764 PF08240 Alcohol dehydrogenase GroES-like domain AB57_0765 PF03466 LysR substrate binding domain AB57_0765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0766 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_0766 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_0766 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_0767 PF07690 Major Facilitator Superfamily AB57_0768 PF02515 CoA-transferase family III AB57_0770 PF14537 Cytochrome c3 AB57_0770 PF00890 FAD binding domain AB57_0771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0771 PF03466 LysR substrate binding domain AB57_0773 PF07690 Major Facilitator Superfamily AB57_0774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0774 PF03466 LysR substrate binding domain AB57_0776 PF07687 Peptidase dimerisation domain AB57_0776 PF01546 Peptidase family M20/M25/M40 AB57_0777 PF12833 Helix-turn-helix domain AB57_0777 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AB57_0779 PF01810 LysE type translocator AB57_0780 PF03466 LysR substrate binding domain AB57_0780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0782 PF08267 Cobalamin-independent synthase, N-terminal domain AB57_0782 PF01717 Cobalamin-independent synthase, Catalytic domain AB57_0783 PF01613 Flavin reductase like domain AB57_0790 PF02567 Phenazine biosynthesis-like protein AB57_0792 PF00268 Ribonucleotide reductase, small chain AB57_0794 PF00317 Ribonucleotide reductase, all-alpha domain AB57_0794 PF02867 Ribonucleotide reductase, barrel domain AB57_0794 PF03477 ATP cone domain AB57_0796 PF00486 Transcriptional regulatory protein, C terminal AB57_0796 PF00072 Response regulator receiver domain AB57_0797 PF00512 His Kinase A (phospho-acceptor) domain AB57_0797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_0797 PF00672 HAMP domain AB57_0799 PF00990 Diguanylate cyclase, GGDEF domain AB57_0799 PF17151 Periplasmic sensor domain AB57_0800 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AB57_0801 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AB57_0802 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AB57_0802 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AB57_0804 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AB57_0804 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AB57_0804 PF10531 SLBB domain AB57_0805 PF00384 Molybdopterin oxidoreductase AB57_0805 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AB57_0805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AB57_0806 PF00146 NADH dehydrogenase AB57_0807 PF12838 4Fe-4S dicluster domain AB57_0808 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AB57_0809 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AB57_0810 PF00361 Proton-conducting membrane transporter AB57_0810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AB57_0811 PF00361 Proton-conducting membrane transporter AB57_0812 PF00361 Proton-conducting membrane transporter AB57_0814 PF00313 'Cold-shock' DNA-binding domain AB57_0816 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0816 PF03466 LysR substrate binding domain AB57_0817 PF00970 Oxidoreductase FAD-binding domain AB57_0817 PF00175 Oxidoreductase NAD-binding domain AB57_0820 PF05552 Conserved TM helix AB57_0823 PF00291 Pyridoxal-phosphate dependent enzyme AB57_0824 PF13533 Biotin-lipoyl like AB57_0829 PF01588 Putative tRNA binding domain AB57_0829 PF09334 tRNA synthetases class I (M) AB57_0831 PF10609 NUBPL iron-transfer P-loop NTPase AB57_0832 PF01048 Phosphorylase superfamily AB57_0835 PF00692 dUTPase AB57_0842 PF01207 Dihydrouridine synthase (Dus) AB57_0844 PF02978 Signal peptide binding domain AB57_0844 PF02881 SRP54-type protein, helical bundle domain AB57_0844 PF00448 SRP54-type protein, GTPase domain AB57_0845 PF03309 Type III pantothenate kinase AB57_0847 PF01925 Sulfite exporter TauE/SafE AB57_0849 PF02463 RecF/RecN/SMC N terminal domain AB57_0849 PF06470 SMC proteins Flexible Hinge Domain AB57_0851 PF03120 NAD-dependent DNA ligase OB-fold domain AB57_0851 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AB57_0851 PF12826 Helix-hairpin-helix motif AB57_0851 PF01653 NAD-dependent DNA ligase adenylation domain AB57_0851 PF00533 BRCA1 C Terminus (BRCT) domain AB57_0852 PF00210 Ferritin-like domain AB57_0853 PF07690 Major Facilitator Superfamily AB57_0854 PF00982 Glycosyltransferase family 20 AB57_0855 PF02358 Trehalose-phosphatase AB57_0856 PF12697 Alpha/beta hydrolase family AB57_0856 PF08241 Methyltransferase domain AB57_0857 PF00202 Aminotransferase class-III AB57_0857 PF06968 Biotin and Thiamin Synthesis associated domain AB57_0857 PF04055 Radical SAM superfamily AB57_0859 PF00155 Aminotransferase class I and II AB57_0862 PF00849 RNA pseudouridylate synthase AB57_0862 PF01479 S4 domain AB57_0863 PF04079 Segregation and condensation complex subunit ScpB AB57_0864 PF02616 Segregation and condensation protein ScpA AB57_0865 PF01300 Telomere recombination AB57_0866 PF04315 Elongation factor P hydroxylase AB57_0867 PF02620 Large ribosomal RNA subunit accumulation protein YceD AB57_0869 PF01783 Ribosomal L32p protein family AB57_0870 PF00698 Acyl transferase domain AB57_0872 PF00550 Phosphopantetheine attachment site AB57_0873 PF04972 BON domain AB57_0873 PF01476 LysM domain AB57_0874 PF08543 Phosphomethylpyrimidine kinase AB57_0874 PF03070 TENA/THI-4/PQQC family AB57_0874 PF02581 Thiamine monophosphate synthase AB57_0876 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AB57_0879 PF02261 Aspartate decarboxylase AB57_0880 PF01195 Peptidyl-tRNA hydrolase AB57_0881 PF01386 Ribosomal L25p family AB57_0882 PF14572 Phosphoribosyl synthetase-associated domain AB57_0882 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AB57_0883 PF08544 GHMP kinases C terminal AB57_0883 PF00288 GHMP kinases N terminal domain AB57_0884 PF03550 Outer membrane lipoprotein LolB AB57_0886 PF10410 DnaB-helicase binding domain of primase AB57_0886 PF08278 DNA primase DnaG DnaB-binding AB57_0886 PF08275 DNA primase catalytic core, N-terminal domain AB57_0886 PF01807 CHC2 zinc finger AB57_0887 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AB57_0887 PF01488 Shikimate / quinate 5-dehydrogenase AB57_0887 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AB57_0888 PF13525 Outer membrane lipoprotein AB57_0889 PF00849 RNA pseudouridylate synthase AB57_0889 PF01479 S4 domain AB57_0891 PF03358 NADPH-dependent FMN reductase AB57_0892 PF01668 SmpB protein AB57_0893 PF01467 Cytidylyltransferase-like AB57_0894 PF00037 4Fe-4S binding domain AB57_0896 PF03466 LysR substrate binding domain AB57_0896 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_0897 PF00180 Isocitrate/isopropylmalate dehydrogenase AB57_0898 PF02028 BCCT, betaine/carnitine/choline family transporter AB57_0899 PF07859 alpha/beta hydrolase fold AB57_0900 PF00355 Rieske [2Fe-2S] domain AB57_0900 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AB57_0901 PF00171 Aldehyde dehydrogenase family AB57_0903 PF00970 Oxidoreductase FAD-binding domain AB57_0903 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_0903 PF00175 Oxidoreductase NAD-binding domain AB57_0905 PF02540 NAD synthase AB57_0905 PF00795 Carbon-nitrogen hydrolase AB57_0907 PF05726 Pirin C-terminal cupin domain AB57_0907 PF02678 Pirin AB57_0909 PF02801 Beta-ketoacyl synthase, C-terminal domain AB57_0909 PF00109 Beta-ketoacyl synthase, N-terminal domain AB57_0911 PF00164 Ribosomal protein S12/S23 AB57_0912 PF00177 Ribosomal protein S7p/S5e AB57_0914 PF00009 Elongation factor Tu GTP binding domain AB57_0914 PF03144 Elongation factor Tu domain 2 AB57_0914 PF03143 Elongation factor Tu C-terminal domain AB57_0919 PF00583 Acetyltransferase (GNAT) family AB57_0920 PF04376 Arginine-tRNA-protein transferase, N terminus AB57_0920 PF04377 Arginine-tRNA-protein transferase, C terminus AB57_0921 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AB57_0922 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_0925 PF01810 LysE type translocator AB57_0927 PF03776 Septum formation topological specificity factor MinE AB57_0928 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AB57_0929 PF03775 Septum formation inhibitor MinC, C-terminal domain AB57_0931 PF01553 Acyltransferase AB57_0932 PF00691 OmpA family AB57_0932 PF13488 Glycine zipper AB57_0933 PF00580 UvrD/REP helicase N-terminal domain AB57_0933 PF13361 UvrD-like helicase C-terminal domain AB57_0934 PF00692 dUTPase AB57_0935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AB57_0935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AB57_0935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AB57_0935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AB57_0936 PF00696 Amino acid kinase family AB57_0938 PF13230 Glutamine amidotransferases class-II AB57_0939 PF01814 Hemerythrin HHE cation binding domain AB57_0941 PF03658 RnfH family Ubiquitin AB57_0942 PF04355 SmpA / OmlA family AB57_0943 PF01475 Ferric uptake regulator family AB57_0944 PF00437 Type II/IV secretion system protein AB57_0945 PF00437 Type II/IV secretion system protein AB57_0946 PF01168 Alanine racemase, N-terminal domain AB57_0948 PF00149 Calcineurin-like phosphoesterase AB57_0948 PF12320 Type 5 capsule protein repressor C-terminal domain AB57_0952 PF01266 FAD dependent oxidoreductase AB57_0953 PF01370 NAD dependent epimerase/dehydratase family AB57_0953 PF08338 Domain of unknown function (DUF1731) AB57_0954 PF00490 Delta-aminolevulinic acid dehydratase AB57_0955 PF03061 Thioesterase superfamily AB57_0956 PF13533 Biotin-lipoyl like AB57_0957 PF07690 Major Facilitator Superfamily AB57_0959 PF13356 Arm DNA-binding domain AB57_0959 PF00589 Phage integrase family AB57_0974 PF07693 KAP family P-loop domain AB57_0977 PF01026 TatD related DNase AB57_0982 PF00083 Sugar (and other) transporter AB57_0983 PF00701 Dihydrodipicolinate synthetase family AB57_0985 PF08281 Sigma-70, region 4 AB57_0985 PF04542 Sigma-70 region 2 AB57_0987 PF00593 TonB dependent receptor AB57_0987 PF07715 TonB-dependent Receptor Plug Domain AB57_0991 PF01126 Heme oxygenase AB57_0998 PF13520 Amino acid permease AB57_0999 PF02574 Homocysteine S-methyltransferase AB57_1001 PF06039 Malate:quinone oxidoreductase (Mqo) AB57_1002 PF05199 GMC oxidoreductase AB57_1002 PF00732 GMC oxidoreductase AB57_1003 PF00171 Aldehyde dehydrogenase family AB57_1004 PF00440 Bacterial regulatory proteins, tetR family AB57_1004 PF13977 BetI-type transcriptional repressor, C-terminal AB57_1005 PF02028 BCCT, betaine/carnitine/choline family transporter AB57_1006 PF02028 BCCT, betaine/carnitine/choline family transporter AB57_1008 PF03061 Thioesterase superfamily AB57_1010 PF02492 CobW/HypB/UreG, nucleotide-binding domain AB57_1010 PF07683 Cobalamin synthesis protein cobW C-terminal domain AB57_1011 PF00375 Sodium:dicarboxylate symporter family AB57_1012 PF07152 YaeQ protein AB57_1013 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AB57_1014 PF01522 Polysaccharide deacetylase AB57_1014 PF14883 Hypothetical glycosyl hydrolase family 13 AB57_1015 PF00535 Glycosyl transferase family 2 AB57_1017 PF00378 Enoyl-CoA hydratase/isomerase AB57_1020 PF01614 Bacterial transcriptional regulator AB57_1020 PF09339 IclR helix-turn-helix domain AB57_1021 PF00355 Rieske [2Fe-2S] domain AB57_1023 PF00355 Rieske [2Fe-2S] domain AB57_1025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AB57_1026 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1026 PF14759 Reductase C-terminal AB57_1027 PF07690 Major Facilitator Superfamily AB57_1029 PF12697 Alpha/beta hydrolase family AB57_1031 PF03447 Homoserine dehydrogenase, NAD binding domain AB57_1031 PF01958 Domain of unknown function DUF108 AB57_1032 PF00171 Aldehyde dehydrogenase family AB57_1033 PF00205 Thiamine pyrophosphate enzyme, central domain AB57_1033 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AB57_1033 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AB57_1035 PF07690 Major Facilitator Superfamily AB57_1037 PF01327 Polypeptide deformylase AB57_1038 PF04960 Glutaminase AB57_1039 PF12833 Helix-turn-helix domain AB57_1039 PF02311 AraC-like ligand binding domain AB57_1040 PF07690 Major Facilitator Superfamily AB57_1041 PF01263 Aldose 1-epimerase AB57_1043 PF03466 LysR substrate binding domain AB57_1043 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1045 PF07690 Major Facilitator Superfamily AB57_1046 PF00456 Transketolase, thiamine diphosphate binding domain AB57_1047 PF02779 Transketolase, pyrimidine binding domain AB57_1047 PF02780 Transketolase, C-terminal domain AB57_1048 PF02607 B12 binding domain AB57_1048 PF00809 Pterin binding enzyme AB57_1048 PF02965 Vitamin B12 dependent methionine synthase, activation domain AB57_1048 PF02574 Homocysteine S-methyltransferase AB57_1048 PF02310 B12 binding domain AB57_1050 PF01384 Phosphate transporter family AB57_1052 PF00291 Pyridoxal-phosphate dependent enzyme AB57_1055 PF03781 Sulfatase-modifying factor enzyme 1 AB57_1056 PF00884 Sulfatase AB57_1058 PF01106 NifU-like domain AB57_1058 PF01521 Iron-sulphur cluster biosynthesis AB57_1059 PF00593 TonB dependent receptor AB57_1059 PF07715 TonB-dependent Receptor Plug Domain AB57_1061 PF00561 alpha/beta hydrolase fold AB57_1063 PF00484 Carbonic anhydrase AB57_1064 PF13472 GDSL-like Lipase/Acylhydrolase family AB57_1065 PF00005 ABC transporter AB57_1067 PF01694 Rhomboid family AB57_1068 PF00912 Transglycosylase AB57_1069 PF13089 Polyphosphate kinase N-terminal domain AB57_1069 PF02503 Polyphosphate kinase middle domain AB57_1069 PF17941 Polyphosphate kinase C-terminal domain 1 AB57_1069 PF13090 Polyphosphate kinase C-terminal domain 2 AB57_1071 PF03466 LysR substrate binding domain AB57_1071 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1072 PF00561 alpha/beta hydrolase fold AB57_1073 PF18113 Rubredoxin binding C-terminal domain AB57_1073 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1074 PF00301 Rubredoxin AB57_1077 PF00152 tRNA synthetases class II (D, K and N) AB57_1077 PF01336 OB-fold nucleic acid binding domain AB57_1078 PF14052 Capsule assembly protein Wzi AB57_1080 PF01507 Phosphoadenosine phosphosulfate reductase family AB57_1081 PF00009 Elongation factor Tu GTP binding domain AB57_1084 PF03600 Citrate transporter AB57_1085 PF00571 CBS domain AB57_1085 PF01595 Cyclin M transmembrane N-terminal domain AB57_1085 PF03471 Transporter associated domain AB57_1086 PF03466 LysR substrate binding domain AB57_1086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1087 PF00463 Isocitrate lyase family AB57_1091 PF01774 UreD urease accessory protein AB57_1092 PF00547 Urease, gamma subunit AB57_1093 PF00699 Urease beta subunit AB57_1094 PF01979 Amidohydrolase family AB57_1094 PF00449 Urease alpha-subunit, N-terminal domain AB57_1095 PF02814 UreE urease accessory protein, N-terminal domain AB57_1095 PF05194 UreE urease accessory protein, C-terminal domain AB57_1096 PF01730 UreF AB57_1097 PF02492 CobW/HypB/UreG, nucleotide-binding domain AB57_1100 PF00905 Penicillin binding protein transpeptidase domain AB57_1100 PF03717 Penicillin-binding Protein dimerisation domain AB57_1103 PF05191 Adenylate kinase, active site lid AB57_1105 PF00633 Helix-hairpin-helix motif AB57_1105 PF10576 Iron-sulfur binding domain of endonuclease III AB57_1105 PF00730 HhH-GPD superfamily base excision DNA repair protein AB57_1106 PF04060 Putative Fe-S cluster AB57_1107 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AB57_1107 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AB57_1109 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AB57_1110 PF02590 Predicted SPOUT methyltransferase AB57_1111 PF02190 ATP-dependent protease La (LON) substrate-binding domain AB57_1111 PF05362 Lon protease (S16) C-terminal proteolytic domain AB57_1111 PF00004 ATPase family associated with various cellular activities (AAA) AB57_1112 PF01812 5-formyltetrahydrofolate cyclo-ligase family AB57_1119 PF00557 Metallopeptidase family M24 AB57_1119 PF05195 Aminopeptidase P, N-terminal domain AB57_1120 PF01494 FAD binding domain AB57_1121 PF01494 FAD binding domain AB57_1124 PF13411 MerR HTH family regulatory protein AB57_1126 PF01810 LysE type translocator AB57_1127 PF03466 LysR substrate binding domain AB57_1127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1129 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AB57_1130 PF02021 Uncharacterised protein family UPF0102 AB57_1131 PF04972 BON domain AB57_1133 PF09297 NADH pyrophosphatase zinc ribbon domain AB57_1133 PF00293 NUDIX domain AB57_1135 PF00929 Exonuclease AB57_1136 PF01476 LysM domain AB57_1136 PF01464 Transglycosylase SLT domain AB57_1136 PF01464 Transglycosylase SLT domain AB57_1136 PF01476 LysM domain AB57_1137 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AB57_1138 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1139 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1139 PF12911 N-terminal TM domain of oligopeptide transport permease C AB57_1140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AB57_1140 PF00005 ABC transporter AB57_1141 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_1141 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1148 PF00593 TonB dependent receptor AB57_1148 PF07715 TonB-dependent Receptor Plug Domain AB57_1149 PF00929 Exonuclease AB57_1150 PF01979 Amidohydrolase family AB57_1151 PF00563 EAL domain AB57_1151 PF00990 Diguanylate cyclase, GGDEF domain AB57_1151 PF00360 Phytochrome region AB57_1151 PF01590 GAF domain AB57_1152 PF00764 Arginosuccinate synthase AB57_1153 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_1153 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1154 PF03180 NLPA lipoprotein AB57_1158 PF04717 Type VI secretion system, phage-baseplate injector AB57_1158 PF16671 Actin cross-linking domain AB57_1159 PF03527 RHS protein AB57_1159 PF05593 RHS Repeat AB57_1165 PF00324 Amino acid permease AB57_1166 PF01266 FAD dependent oxidoreductase AB57_1167 PF00324 Amino acid permease AB57_1169 PF07729 FCD domain AB57_1169 PF00392 Bacterial regulatory proteins, gntR family AB57_1171 PF00171 Aldehyde dehydrogenase family AB57_1173 PF00202 Aminotransferase class-III AB57_1174 PF04958 Arginine N-succinyltransferase beta subunit AB57_1175 PF00324 Amino acid permease AB57_1178 PF00171 Aldehyde dehydrogenase family AB57_1179 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AB57_1179 PF12833 Helix-turn-helix domain AB57_1180 PF00892 EamA-like transporter family AB57_1181 PF08666 SAF domain AB57_1181 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AB57_1182 PF07690 Major Facilitator Superfamily AB57_1183 PF13378 Enolase C-terminal domain-like AB57_1185 PF00701 Dihydrodipicolinate synthetase family AB57_1186 PF00171 Aldehyde dehydrogenase family AB57_1187 PF00392 Bacterial regulatory proteins, gntR family AB57_1187 PF07729 FCD domain AB57_1188 PF07519 Tannase and feruloyl esterase AB57_1191 PF03573 outer membrane porin, OprD family AB57_1192 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1192 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1192 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1194 PF00171 Aldehyde dehydrogenase family AB57_1195 PF00378 Enoyl-CoA hydratase/isomerase AB57_1196 PF07690 Major Facilitator Superfamily AB57_1199 PF00175 Oxidoreductase NAD-binding domain AB57_1199 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_1200 PF00355 Rieske [2Fe-2S] domain AB57_1201 PF07690 Major Facilitator Superfamily AB57_1202 PF03573 outer membrane porin, OprD family AB57_1203 PF05199 GMC oxidoreductase AB57_1204 PF07859 alpha/beta hydrolase fold AB57_1205 PF00106 short chain dehydrogenase AB57_1206 PF00743 Flavin-binding monooxygenase-like AB57_1207 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AB57_1207 PF12833 Helix-turn-helix domain AB57_1208 PF04072 Leucine carboxyl methyltransferase AB57_1209 PF00743 Flavin-binding monooxygenase-like AB57_1210 PF00106 short chain dehydrogenase AB57_1212 PF17932 Tetracyclin repressor-like, C-terminal domain AB57_1212 PF00440 Bacterial regulatory proteins, tetR family AB57_1213 PF02678 Pirin AB57_1213 PF17954 Quercetinase C-terminal cupin domain AB57_1215 PF00106 short chain dehydrogenase AB57_1216 PF00743 Flavin-binding monooxygenase-like AB57_1218 PF00860 Permease family AB57_1219 PF00962 Adenosine/AMP deaminase AB57_1220 PF01292 Prokaryotic cytochrome b561 AB57_1222 PF01351 Ribonuclease HII AB57_1223 PF02599 Global regulator protein family AB57_1224 PF00696 Amino acid kinase family AB57_1224 PF01842 ACT domain AB57_1224 PF13840 ACT domain AB57_1232 PF00929 Exonuclease AB57_1246 PF00145 C-5 cytosine-specific DNA methylase AB57_1248 PF01695 IstB-like ATP binding protein AB57_1290 PF02768 DNA polymerase III beta subunit, C-terminal domain AB57_1290 PF00712 DNA polymerase III beta subunit, N-terminal domain AB57_1290 PF02767 DNA polymerase III beta subunit, central domain AB57_1305 PF13438 Domain of unknown function (DUF4113) AB57_1305 PF00817 impB/mucB/samB family AB57_1305 PF11799 impB/mucB/samB family C-terminal domain AB57_1305 PF11798 IMS family HHH motif AB57_1306 PF00717 Peptidase S24-like AB57_1310 PF13356 Arm DNA-binding domain AB57_1310 PF00589 Phage integrase family AB57_1311 PF02272 DHHA1 domain AB57_1311 PF01411 tRNA synthetases class II (A) AB57_1311 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AB57_1312 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AB57_1312 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AB57_1314 PF13393 Histidyl-tRNA synthetase AB57_1315 PF00709 Adenylosuccinate synthetase AB57_1317 PF00248 Aldo/keto reductase family AB57_1318 PF00027 Cyclic nucleotide-binding domain AB57_1318 PF13545 Crp-like helix-turn-helix domain AB57_1319 PF02566 OsmC-like protein AB57_1322 PF17871 AAA lid domain AB57_1322 PF10431 C-terminal, D2-small domain, of ClpB protein AB57_1322 PF07724 AAA domain (Cdc48 subfamily) AB57_1322 PF00004 ATPase family associated with various cellular activities (AAA) AB57_1322 PF02861 Clp amino terminal domain, pathogenicity island component AB57_1325 PF01170 Putative RNA methylase family UPF0020 AB57_1325 PF02926 THUMP domain AB57_1325 PF10672 S-adenosylmethionine-dependent methyltransferase AB57_1327 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AB57_1327 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AB57_1328 PF01979 Amidohydrolase family AB57_1330 PF00691 OmpA family AB57_1330 PF13488 Glycine zipper AB57_1332 PF00043 Glutathione S-transferase, C-terminal domain AB57_1332 PF13417 Glutathione S-transferase, N-terminal domain AB57_1333 PF02390 Putative methyltransferase AB57_1335 PF02798 Glutathione S-transferase, N-terminal domain AB57_1335 PF00043 Glutathione S-transferase, C-terminal domain AB57_1337 PF13192 Thioredoxin domain AB57_1337 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1341 PF00578 AhpC/TSA family AB57_1341 PF10417 C-terminal domain of 1-Cys peroxiredoxin AB57_1342 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AB57_1342 PF00271 Helicase conserved C-terminal domain AB57_1342 PF00270 DEAD/DEAH box helicase AB57_1342 PF11898 Domain of unknown function (DUF3418) AB57_1342 PF04408 Helicase associated domain (HA2) AB57_1343 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AB57_1343 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AB57_1345 PF07690 Major Facilitator Superfamily AB57_1346 PF03594 Benzoate membrane transport protein AB57_1347 PF00106 short chain dehydrogenase AB57_1348 PF00970 Oxidoreductase FAD-binding domain AB57_1348 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_1348 PF00175 Oxidoreductase NAD-binding domain AB57_1349 PF00866 Ring hydroxylating beta subunit AB57_1350 PF00355 Rieske [2Fe-2S] domain AB57_1350 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AB57_1351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1351 PF03466 LysR substrate binding domain AB57_1352 PF00403 Heavy-metal-associated domain AB57_1353 PF00403 Heavy-metal-associated domain AB57_1354 PF09278 MerR, DNA binding AB57_1354 PF00376 MerR family regulatory protein AB57_1361 PF02601 Exonuclease VII, large subunit AB57_1361 PF13742 OB-fold nucleic acid binding domain AB57_1366 PF01810 LysE type translocator AB57_1367 PF00313 'Cold-shock' DNA-binding domain AB57_1369 PF14748 Pyrroline-5-carboxylate reductase dimerisation AB57_1369 PF03807 NADP oxidoreductase coenzyme F420-dependent AB57_1373 PF07690 Major Facilitator Superfamily AB57_1375 PF01638 HxlR-like helix-turn-helix AB57_1389 PF06381 Protein of unknown function (DUF1073) AB57_1393 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) AB57_1397 PF12708 Pectate lyase superfamily protein AB57_1397 PF13229 Right handed beta helix region AB57_1406 PF00589 Phage integrase family AB57_1408 PF09190 DALR domain AB57_1408 PF01406 tRNA synthetases class I (C) catalytic domain AB57_1409 PF00571 CBS domain AB57_1409 PF01380 SIS domain AB57_1412 PF03968 OstA-like protein AB57_1413 PF00005 ABC transporter AB57_1413 PF12399 Branched-chain amino acid ATP-binding cassette transporter AB57_1414 PF02321 Outer membrane efflux protein AB57_1415 PF00664 ABC transporter transmembrane region AB57_1415 PF00005 ABC transporter AB57_1415 PF03412 Peptidase C39 family AB57_1417 PF01205 Uncharacterized protein family UPF0029 AB57_1418 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_1420 PF01596 O-methyltransferase AB57_1422 PF11953 Domain of unknown function (DUF3470) AB57_1422 PF00037 4Fe-4S binding domain AB57_1424 PF00488 MutS domain V AB57_1424 PF05190 MutS family domain IV AB57_1424 PF05192 MutS domain III AB57_1424 PF05188 MutS domain II AB57_1424 PF01624 MutS domain I AB57_1426 PF01037 Lrp/AsnC ligand binding domain AB57_1427 PF00892 EamA-like transporter family AB57_1430 PF03279 Bacterial lipid A biosynthesis acyltransferase AB57_1432 PF07690 Major Facilitator Superfamily AB57_1437 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AB57_1437 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AB57_1442 PF04717 Type VI secretion system, phage-baseplate injector AB57_1442 PF16671 Actin cross-linking domain AB57_1443 PF05593 RHS Repeat AB57_1443 PF03527 RHS protein AB57_1443 PF14220 Domain of unknown function (DUF4329) AB57_1447 PF03527 RHS protein AB57_1447 PF05593 RHS Repeat AB57_1451 PF03466 LysR substrate binding domain AB57_1451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1452 PF01566 Natural resistance-associated macrophage protein AB57_1453 PF03746 LamB/YcsF family AB57_1454 PF07286 Protein of unknown function (DUF1445) AB57_1456 PF00364 Biotin-requiring enzyme AB57_1456 PF02785 Biotin carboxylase C-terminal domain AB57_1456 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AB57_1456 PF00289 Biotin carboxylase, N-terminal domain AB57_1457 PF00654 Voltage gated chloride channel AB57_1461 PF00440 Bacterial regulatory proteins, tetR family AB57_1463 PF08240 Alcohol dehydrogenase GroES-like domain AB57_1463 PF00107 Zinc-binding dehydrogenase AB57_1463 PF13823 Alcohol dehydrogenase GroES-associated AB57_1468 PF02525 Flavodoxin-like fold AB57_1469 PF01638 HxlR-like helix-turn-helix AB57_1471 PF08753 NikR C terminal nickel binding domain AB57_1471 PF01402 Ribbon-helix-helix protein, copG family AB57_1472 PF01425 Amidase AB57_1473 PF00497 Bacterial extracellular solute-binding proteins, family 3 AB57_1474 PF00005 ABC transporter AB57_1488 PF00691 OmpA family AB57_1488 PF01389 OmpA-like transmembrane domain AB57_1490 PF10431 C-terminal, D2-small domain, of ClpB protein AB57_1490 PF17871 AAA lid domain AB57_1490 PF00004 ATPase family associated with various cellular activities (AAA) AB57_1490 PF07724 AAA domain (Cdc48 subfamily) AB57_1496 PF03466 LysR substrate binding domain AB57_1496 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1498 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AB57_1499 PF07690 Major Facilitator Superfamily AB57_1502 PF02677 Epoxyqueuosine reductase QueH AB57_1503 PF09278 MerR, DNA binding AB57_1503 PF00376 MerR family regulatory protein AB57_1505 PF00701 Dihydrodipicolinate synthetase family AB57_1508 PF00392 Bacterial regulatory proteins, gntR family AB57_1509 PF05544 Proline racemase AB57_1510 PF01266 FAD dependent oxidoreductase AB57_1512 PF04324 BFD-like [2Fe-2S] binding domain AB57_1512 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1514 PF00083 Sugar (and other) transporter AB57_1515 PF00171 Aldehyde dehydrogenase family AB57_1516 PF13520 Amino acid permease AB57_1517 PF03313 Serine dehydratase alpha chain AB57_1517 PF03315 Serine dehydratase beta chain AB57_1518 PF01575 MaoC like domain AB57_1518 PF00171 Aldehyde dehydrogenase family AB57_1519 PF05138 Phenylacetic acid catabolic protein AB57_1520 PF06243 Phenylacetic acid degradation B AB57_1521 PF05138 Phenylacetic acid catabolic protein AB57_1522 PF01883 Iron-sulfur cluster assembly protein AB57_1523 PF00970 Oxidoreductase FAD-binding domain AB57_1523 PF00175 Oxidoreductase NAD-binding domain AB57_1523 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_1524 PF00378 Enoyl-CoA hydratase/isomerase AB57_1525 PF00378 Enoyl-CoA hydratase/isomerase AB57_1526 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AB57_1526 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AB57_1526 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AB57_1527 PF00108 Thiolase, N-terminal domain AB57_1527 PF02803 Thiolase, C-terminal domain AB57_1528 PF14535 AMP-binding enzyme C-terminal domain AB57_1528 PF00501 AMP-binding enzyme AB57_1529 PF08223 PaaX-like protein C-terminal domain AB57_1529 PF07848 PaaX-like protein AB57_1530 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_1531 PF03061 Thioesterase superfamily AB57_1532 PF02463 RecF/RecN/SMC N terminal domain AB57_1533 PF13361 UvrD-like helicase C-terminal domain AB57_1533 PF00580 UvrD/REP helicase N-terminal domain AB57_1539 PF00313 'Cold-shock' DNA-binding domain AB57_1546 PF02515 CoA-transferase family III AB57_1547 PF00682 HMGL-like AB57_1548 PF07690 Major Facilitator Superfamily AB57_1549 PF00199 Catalase AB57_1550 PF01292 Prokaryotic cytochrome b561 AB57_1554 PF12697 Alpha/beta hydrolase family AB57_1555 PF01613 Flavin reductase like domain AB57_1556 PF00296 Luciferase-like monooxygenase AB57_1557 PF00171 Aldehyde dehydrogenase family AB57_1559 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AB57_1561 PF00171 Aldehyde dehydrogenase family AB57_1562 PF02627 Carboxymuconolactone decarboxylase family AB57_1563 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1563 PF03466 LysR substrate binding domain AB57_1564 PF02525 Flavodoxin-like fold AB57_1565 PF09339 IclR helix-turn-helix domain AB57_1565 PF01614 Bacterial transcriptional regulator AB57_1566 PF01494 FAD binding domain AB57_1567 PF00392 Bacterial regulatory proteins, gntR family AB57_1567 PF07702 UTRA domain AB57_1569 PF00005 ABC transporter AB57_1569 PF08402 TOBE domain AB57_1570 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1571 PF01266 FAD dependent oxidoreductase AB57_1572 PF00266 Aminotransferase class-V AB57_1573 PF13419 Haloacid dehalogenase-like hydrolase AB57_1574 PF07690 Major Facilitator Superfamily AB57_1575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1575 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1576 PF02515 CoA-transferase family III AB57_1577 PF09339 IclR helix-turn-helix domain AB57_1578 PF00378 Enoyl-CoA hydratase/isomerase AB57_1579 PF03060 Nitronate monooxygenase AB57_1580 PF07690 Major Facilitator Superfamily AB57_1581 PF09339 IclR helix-turn-helix domain AB57_1582 PF00108 Thiolase, N-terminal domain AB57_1582 PF02803 Thiolase, C-terminal domain AB57_1583 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AB57_1583 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AB57_1583 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AB57_1585 PF00378 Enoyl-CoA hydratase/isomerase AB57_1586 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1586 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1586 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1587 PF07690 Major Facilitator Superfamily AB57_1588 PF01144 Coenzyme A transferase AB57_1589 PF01144 Coenzyme A transferase AB57_1591 PF07690 Major Facilitator Superfamily AB57_1593 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1593 PF12806 Acetyl-CoA dehydrogenase C-terminal like AB57_1593 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1593 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1596 PF03466 LysR substrate binding domain AB57_1596 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1597 PF00682 HMGL-like AB57_1598 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AB57_1598 PF00364 Biotin-requiring enzyme AB57_1598 PF00289 Biotin carboxylase, N-terminal domain AB57_1598 PF02785 Biotin carboxylase C-terminal domain AB57_1599 PF00378 Enoyl-CoA hydratase/isomerase AB57_1600 PF01039 Carboxyl transferase domain AB57_1601 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1601 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1601 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1602 PF00440 Bacterial regulatory proteins, tetR family AB57_1603 PF00501 AMP-binding enzyme AB57_1603 PF13193 AMP-binding enzyme C-terminal domain AB57_1608 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1608 PF03466 LysR substrate binding domain AB57_1615 PF00994 Probable molybdopterin binding domain AB57_1615 PF02464 Competence-damaged protein AB57_1615 PF18146 Damage-inducible protein CinA KH domain AB57_1617 PF00199 Catalase AB57_1617 PF06628 Catalase-related immune-responsive AB57_1617 PF18011 C-terminal domain found in long catalases AB57_1623 PF00717 Peptidase S24-like AB57_1625 PF01037 Lrp/AsnC ligand binding domain AB57_1625 PF13404 AsnC-type helix-turn-helix domain AB57_1628 PF09308 LuxQ, periplasmic AB57_1628 PF00072 Response regulator receiver domain AB57_1628 PF00512 His Kinase A (phospho-acceptor) domain AB57_1628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_1629 PF00072 Response regulator receiver domain AB57_1631 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1632 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1633 PF00005 ABC transporter AB57_1634 PF00497 Bacterial extracellular solute-binding proteins, family 3 AB57_1635 PF00497 Bacterial extracellular solute-binding proteins, family 3 AB57_1636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1636 PF03466 LysR substrate binding domain AB57_1637 PF01810 LysE type translocator AB57_1638 PF00266 Aminotransferase class-V AB57_1640 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_1641 PF00581 Rhodanese-like domain AB57_1643 PF03466 LysR substrate binding domain AB57_1643 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1644 PF02798 Glutathione S-transferase, N-terminal domain AB57_1645 PF02798 Glutathione S-transferase, N-terminal domain AB57_1645 PF14834 Glutathione S-transferase, C-terminal domain AB57_1646 PF03466 LysR substrate binding domain AB57_1646 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1647 PF03788 LrgA family AB57_1648 PF04172 LrgB-like family AB57_1649 PF00392 Bacterial regulatory proteins, gntR family AB57_1652 PF07690 Major Facilitator Superfamily AB57_1654 PF16957 Malonate decarboxylase, alpha subunit, transporter AB57_1655 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AB57_1656 PF06857 Malonate decarboxylase delta subunit (MdcD) AB57_1657 PF01039 Carboxyl transferase domain AB57_1659 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AB57_1660 PF00698 Acyl transferase domain AB57_1663 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1663 PF03466 LysR substrate binding domain AB57_1664 PF00392 Bacterial regulatory proteins, gntR family AB57_1664 PF00155 Aminotransferase class I and II AB57_1666 PF02322 Cytochrome bd terminal oxidase subunit II AB57_1667 PF01654 Cytochrome bd terminal oxidase subunit I AB57_1671 PF00296 Luciferase-like monooxygenase AB57_1672 PF00083 Sugar (and other) transporter AB57_1674 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AB57_1675 PF00005 ABC transporter AB57_1676 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1677 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AB57_1678 PF01177 Asp/Glu/Hydantoin racemase AB57_1679 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AB57_1681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1681 PF03466 LysR substrate binding domain AB57_1683 PF13382 Adenine deaminase C-terminal domain AB57_1683 PF01979 Amidohydrolase family AB57_1685 PF03960 ArsC family AB57_1686 PF01022 Bacterial regulatory protein, arsR family AB57_1687 PF01758 Sodium Bile acid symporter family AB57_1688 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1688 PF03466 LysR substrate binding domain AB57_1691 PF13192 Thioredoxin domain AB57_1691 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1694 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_1695 PF00588 SpoU rRNA Methylase family AB57_1696 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AB57_1696 PF02811 PHP domain AB57_1696 PF01336 OB-fold nucleic acid binding domain AB57_1696 PF14579 Helix-hairpin-helix motif AB57_1696 PF07733 Bacterial DNA polymerase III alpha NTPase domain AB57_1697 PF00710 Asparaginase, N-terminal AB57_1697 PF17763 Glutaminase/Asparaginase C-terminal domain AB57_1698 PF00375 Sodium:dicarboxylate symporter family AB57_1699 PF00155 Aminotransferase class I and II AB57_1700 PF01641 SelR domain AB57_1701 PF00255 Glutathione peroxidase AB57_1702 PF12852 Cupin AB57_1702 PF12833 Helix-turn-helix domain AB57_1704 PF00155 Aminotransferase class I and II AB57_1705 PF08335 GlnD PII-uridylyltransferase AB57_1705 PF01966 HD domain AB57_1705 PF01909 Nucleotidyltransferase domain AB57_1706 PF02222 ATP-grasp domain AB57_1708 PF05437 Branched-chain amino acid transport protein (AzlD) AB57_1709 PF03591 AzlC protein AB57_1714 PF01926 50S ribosome-binding GTPase AB57_1714 PF06071 Protein of unknown function (DUF933) AB57_1715 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1716 PF00005 ABC transporter AB57_1716 PF09383 NIL domain AB57_1717 PF03180 NLPA lipoprotein AB57_1718 PF03180 NLPA lipoprotein AB57_1719 PF00296 Luciferase-like monooxygenase AB57_1723 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AB57_1723 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1726 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1727 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1728 PF00005 ABC transporter AB57_1730 PF01037 Lrp/AsnC ligand binding domain AB57_1731 PF01709 Transcriptional regulator AB57_1733 PF00440 Bacterial regulatory proteins, tetR family AB57_1737 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1737 PF03466 LysR substrate binding domain AB57_1739 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AB57_1741 PF00892 EamA-like transporter family AB57_1745 PF00577 Outer membrane usher protein AB57_1745 PF13953 PapC C-terminal domain AB57_1745 PF13954 PapC N-terminal domain AB57_1746 PF02753 Pili assembly chaperone PapD, C-terminal domain AB57_1746 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AB57_1747 PF16970 Type-1 fimbrial protein, A AB57_1750 PF06968 Biotin and Thiamin Synthesis associated domain AB57_1750 PF04055 Radical SAM superfamily AB57_1751 PF08331 Domain of unknown function (DUF1730) AB57_1752 PF01256 Carbohydrate kinase AB57_1752 PF03853 YjeF-related protein N-terminus AB57_1753 PF02075 Crossover junction endodeoxyribonuclease RuvC AB57_1757 PF00905 Penicillin binding protein transpeptidase domain AB57_1761 PF00438 S-adenosylmethionine synthetase, N-terminal domain AB57_1761 PF02772 S-adenosylmethionine synthetase, central domain AB57_1761 PF02773 S-adenosylmethionine synthetase, C-terminal domain AB57_1762 PF00456 Transketolase, thiamine diphosphate binding domain AB57_1762 PF02780 Transketolase, C-terminal domain AB57_1762 PF02779 Transketolase, pyrimidine binding domain AB57_1764 PF04264 YceI-like domain AB57_1766 PF09992 Phosphodiester glycosidase AB57_1768 PF05958 tRNA (Uracil-5-)-methyltransferase AB57_1769 PF04229 GrpB protein AB57_1770 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AB57_1770 PF01619 Proline dehydrogenase AB57_1770 PF14850 DNA-binding domain of Proline dehydrogenase AB57_1770 PF00171 Aldehyde dehydrogenase family AB57_1771 PF01037 Lrp/AsnC ligand binding domain AB57_1772 PF00474 Sodium:solute symporter family AB57_1773 PF02146 Sir2 family AB57_1774 PF01597 Glycine cleavage H-protein AB57_1775 PF12833 Helix-turn-helix domain AB57_1775 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AB57_1779 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AB57_1780 PF06912 Protein of unknown function (DUF1275) AB57_1781 PF00375 Sodium:dicarboxylate symporter family AB57_1784 PF08007 Cupin superfamily protein AB57_1785 PF02545 Maf-like protein AB57_1787 PF00162 Phosphoglycerate kinase AB57_1789 PF01116 Fructose-bisphosphate aldolase class-II AB57_1790 PF00639 PPIC-type PPIASE domain AB57_1790 PF09312 SurA N-terminal domain AB57_1791 PF04453 LPS transport system D AB57_1791 PF03968 OstA-like protein AB57_1792 PF01636 Phosphotransferase enzyme family AB57_1793 PF00483 Nucleotidyl transferase AB57_1794 PF02527 rRNA small subunit methyltransferase G AB57_1795 PF13614 AAA domain AB57_1796 PF17762 HTH domain found in ParB protein AB57_1796 PF02195 ParB-like nuclease domain AB57_1797 PF01618 MotA/TolQ/ExbB proton channel family AB57_1799 PF00005 ABC transporter AB57_1799 PF00664 ABC transporter transmembrane region AB57_1800 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AB57_1803 PF09115 DNA polymerase III, delta subunit, C terminal AB57_1805 PF01026 TatD related DNase AB57_1808 PF02501 Type II secretion system (T2SS), protein I AB57_1808 PF07963 Prokaryotic N-terminal methylation motif AB57_1809 PF11612 Type II secretion system (T2SS), protein J AB57_1809 PF07963 Prokaryotic N-terminal methylation motif AB57_1810 PF03934 Type II secretion system (T2SS), protein K AB57_1812 PF03167 Uracil DNA glycosylase superfamily AB57_1814 PF14437 MafB19-like deaminase AB57_1816 PF02224 Cytidylate kinase AB57_1817 PF00575 S1 RNA binding domain AB57_1818 PF00216 Bacterial DNA-binding protein AB57_1821 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AB57_1822 PF00743 Flavin-binding monooxygenase-like AB57_1824 PF03969 AFG1-like ATPase AB57_1825 PF01274 Malate synthase AB57_1827 PF02472 Biopolymer transport protein ExbD/TolR AB57_1828 PF02472 Biopolymer transport protein ExbD/TolR AB57_1829 PF01618 MotA/TolQ/ExbB proton channel family AB57_1830 PF03544 Gram-negative bacterial TonB protein C-terminal AB57_1831 PF00593 TonB dependent receptor AB57_1831 PF07715 TonB-dependent Receptor Plug Domain AB57_1834 PF01432 Peptidase family M3 AB57_1835 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1836 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1837 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AB57_1837 PF00005 ABC transporter AB57_1840 PF00459 Inositol monophosphatase family AB57_1842 PF01649 Ribosomal protein S20 AB57_1843 PF13460 NAD(P)H-binding AB57_1844 PF03737 Aldolase/RraA AB57_1848 PF00270 DEAD/DEAH box helicase AB57_1848 PF03461 TRCF domain AB57_1848 PF02559 CarD-like/TRCF domain AB57_1848 PF17757 UvrB interaction domain AB57_1848 PF00271 Helicase conserved C-terminal domain AB57_1850 PF00211 Adenylate and Guanylate cyclase catalytic domain AB57_1851 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_1852 PF00012 Hsp70 protein AB57_1853 PF00226 DnaJ domain AB57_1853 PF07743 HSCB C-terminal oligomerisation domain AB57_1854 PF01521 Iron-sulphur cluster biosynthesis AB57_1855 PF01592 NifU-like N terminal domain AB57_1856 PF00266 Aminotransferase class-V AB57_1857 PF02082 Transcriptional regulator AB57_1860 PF00216 Bacterial DNA-binding protein AB57_1861 PF00639 PPIC-type PPIASE domain AB57_1861 PF09312 SurA N-terminal domain AB57_1862 PF12852 Cupin AB57_1862 PF12833 Helix-turn-helix domain AB57_1863 PF00487 Fatty acid desaturase AB57_1864 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1864 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1864 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_1865 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_1865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_1866 PF03109 ABC1 family AB57_1868 PF04073 Aminoacyl-tRNA editing domain AB57_1869 PF06276 Ferric iron reductase FhuF-like transporter AB57_1869 PF04183 IucA / IucC family AB57_1870 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AB57_1871 PF07690 Major Facilitator Superfamily AB57_1872 PF04183 IucA / IucC family AB57_1872 PF06276 Ferric iron reductase FhuF-like transporter AB57_1873 PF06276 Ferric iron reductase FhuF-like transporter AB57_1873 PF04183 IucA / IucC family AB57_1875 PF03737 Aldolase/RraA AB57_1876 PF00593 TonB dependent receptor AB57_1876 PF07715 TonB-dependent Receptor Plug Domain AB57_1882 PF13419 Haloacid dehalogenase-like hydrolase AB57_1884 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AB57_1885 PF02277 Phosphoribosyltransferase AB57_1886 PF00300 Histidine phosphatase superfamily (branch 1) AB57_1888 PF02654 Cobalamin-5-phosphate synthase AB57_1889 PF00793 DAHP synthetase I family AB57_1890 PF01925 Sulfite exporter TauE/SafE AB57_1893 PF00593 TonB dependent receptor AB57_1893 PF07715 TonB-dependent Receptor Plug Domain AB57_1894 PF02684 Lipid-A-disaccharide synthetase AB57_1899 PF01230 HIT domain AB57_1905 PF08241 Methyltransferase domain AB57_1906 PF00561 alpha/beta hydrolase fold AB57_1907 PF01053 Cys/Met metabolism PLP-dependent enzyme AB57_1909 PF02575 YbaB/EbfC DNA-binding family AB57_1910 PF02132 RecR protein AB57_1910 PF13662 Toprim domain AB57_1911 PF00570 HRDC domain AB57_1911 PF01612 3'-5' exonuclease AB57_1916 PF05166 YcgL domain AB57_1919 PF17862 AAA+ lid domain AB57_1919 PF00004 ATPase family associated with various cellular activities (AAA) AB57_1919 PF01434 Peptidase family M41 AB57_1921 PF00291 Pyridoxal-phosphate dependent enzyme AB57_1922 PF05175 Methyltransferase small domain AB57_1923 PF01264 Chorismate synthase AB57_1924 PF08448 PAS fold AB57_1924 PF00990 Diguanylate cyclase, GGDEF domain AB57_1927 PF04055 Radical SAM superfamily AB57_1928 PF00676 Dehydrogenase E1 component AB57_1929 PF02779 Transketolase, pyrimidine binding domain AB57_1929 PF02780 Transketolase, C-terminal domain AB57_1930 PF00364 Biotin-requiring enzyme AB57_1930 PF02817 e3 binding domain AB57_1930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AB57_1931 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_1931 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AB57_1932 PF00106 short chain dehydrogenase AB57_1933 PF00107 Zinc-binding dehydrogenase AB57_1933 PF08240 Alcohol dehydrogenase GroES-like domain AB57_1934 PF01062 Bestrophin, RFP-TM, chloride channel AB57_1935 PF02954 Bacterial regulatory protein, Fis family AB57_1935 PF00072 Response regulator receiver domain AB57_1935 PF00158 Sigma-54 interaction domain AB57_1936 PF00753 Metallo-beta-lactamase superfamily AB57_1936 PF04273 Putative phosphatase (DUF442) AB57_1937 PF00753 Metallo-beta-lactamase superfamily AB57_1937 PF04273 Putative phosphatase (DUF442) AB57_1938 PF01925 Sulfite exporter TauE/SafE AB57_1942 PF12833 Helix-turn-helix domain AB57_1942 PF06445 GyrI-like small molecule binding domain AB57_1943 PF02525 Flavodoxin-like fold AB57_1948 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AB57_1949 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1950 PF00005 ABC transporter AB57_1953 PF00083 Sugar (and other) transporter AB57_1954 PF07715 TonB-dependent Receptor Plug Domain AB57_1954 PF00593 TonB dependent receptor AB57_1955 PF00206 Lyase AB57_1955 PF10415 Fumarase C C-terminus AB57_1958 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1958 PF03466 LysR substrate binding domain AB57_1959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1959 PF03466 LysR substrate binding domain AB57_1960 PF00108 Thiolase, N-terminal domain AB57_1960 PF02803 Thiolase, C-terminal domain AB57_1961 PF02667 Short chain fatty acid transporter AB57_1962 PF01144 Coenzyme A transferase AB57_1963 PF01144 Coenzyme A transferase AB57_1964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1964 PF03466 LysR substrate binding domain AB57_1968 PF12833 Helix-turn-helix domain AB57_1968 PF06719 AraC-type transcriptional regulator N-terminus AB57_1969 PF07690 Major Facilitator Superfamily AB57_1970 PF01738 Dienelactone hydrolase family AB57_1973 PF01613 Flavin reductase like domain AB57_1975 PF12833 Helix-turn-helix domain AB57_1975 PF14525 AraC-binding-like domain AB57_1976 PF00175 Oxidoreductase NAD-binding domain AB57_1976 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_1976 PF00970 Oxidoreductase FAD-binding domain AB57_1977 PF00866 Ring hydroxylating beta subunit AB57_1978 PF00355 Rieske [2Fe-2S] domain AB57_1978 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AB57_1979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_1979 PF03459 TOBE domain AB57_1981 PF00528 Binding-protein-dependent transport system inner membrane component AB57_1982 PF03459 TOBE domain AB57_1982 PF00005 ABC transporter AB57_1983 PF00106 short chain dehydrogenase AB57_1984 PF00857 Isochorismatase family AB57_1984 PF00550 Phosphopantetheine attachment site AB57_1986 PF00149 Calcineurin-like phosphoesterase AB57_1987 PF02503 Polyphosphate kinase middle domain AB57_1987 PF13089 Polyphosphate kinase N-terminal domain AB57_1987 PF17941 Polyphosphate kinase C-terminal domain 1 AB57_1987 PF13090 Polyphosphate kinase C-terminal domain 2 AB57_1989 PF12706 Beta-lactamase superfamily domain AB57_1990 PF03070 TENA/THI-4/PQQC family AB57_1991 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AB57_1992 PF04055 Radical SAM superfamily AB57_1992 PF13186 Iron-sulfur cluster-binding domain AB57_1993 PF01244 Membrane dipeptidase (Peptidase family M19) AB57_1997 PF13091 PLD-like domain AB57_2000 PF00199 Catalase AB57_2002 PF00107 Zinc-binding dehydrogenase AB57_2002 PF08240 Alcohol dehydrogenase GroES-like domain AB57_2005 PF00577 Outer membrane usher protein AB57_2005 PF13953 PapC C-terminal domain AB57_2005 PF13954 PapC N-terminal domain AB57_2006 PF02753 Pili assembly chaperone PapD, C-terminal domain AB57_2006 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AB57_2007 PF16970 Type-1 fimbrial protein, A AB57_2076 PF01266 FAD dependent oxidoreductase AB57_2078 PF00743 Flavin-binding monooxygenase-like AB57_2079 PF12146 Serine aminopeptidase, S33 AB57_2080 PF02321 Outer membrane efflux protein AB57_2081 PF00873 AcrB/AcrD/AcrF family AB57_2082 PF00529 HlyD membrane-fusion protein of T1SS AB57_2082 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AB57_2083 PF00072 Response regulator receiver domain AB57_2083 PF00486 Transcriptional regulatory protein, C terminal AB57_2084 PF00672 HAMP domain AB57_2084 PF00512 His Kinase A (phospho-acceptor) domain AB57_2084 PF16527 Two-component sensor protein CpxA, periplasmic domain AB57_2084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_2087 PF12833 Helix-turn-helix domain AB57_2087 PF02311 AraC-like ligand binding domain AB57_2088 PF12146 Serine aminopeptidase, S33 AB57_2091 PF03466 LysR substrate binding domain AB57_2091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2092 PF12146 Serine aminopeptidase, S33 AB57_2093 PF13673 Acetyltransferase (GNAT) domain AB57_2099 PF00271 Helicase conserved C-terminal domain AB57_2099 PF04851 Type III restriction enzyme, res subunit AB57_2099 PF02151 UvrB/uvrC motif AB57_2099 PF12344 Ultra-violet resistance protein B AB57_2099 PF17757 UvrB interaction domain AB57_2100 PF13291 ACT domain AB57_2100 PF04607 Region found in RelA / SpoT proteins AB57_2100 PF02824 TGS domain AB57_2102 PF01975 Survival protein SurE AB57_2107 PF07690 Major Facilitator Superfamily AB57_2108 PF13533 Biotin-lipoyl like AB57_2109 PF01425 Amidase AB57_2110 PF00196 Bacterial regulatory proteins, luxR family AB57_2110 PF03472 Autoinducer binding domain AB57_2114 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AB57_2115 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AB57_2115 PF14572 Phosphoribosyl synthetase-associated domain AB57_2118 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AB57_2118 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AB57_2119 PF07690 Major Facilitator Superfamily AB57_2120 PF01370 NAD dependent epimerase/dehydratase family AB57_2121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2121 PF03466 LysR substrate binding domain AB57_2123 PF00920 Dehydratase family AB57_2124 PF00171 Aldehyde dehydrogenase family AB57_2127 PF00529 HlyD membrane-fusion protein of T1SS AB57_2127 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AB57_2130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2130 PF03466 LysR substrate binding domain AB57_2132 PF08450 SMP-30/Gluconolactonase/LRE-like region AB57_2135 PF04909 Amidohydrolase AB57_2136 PF07690 Major Facilitator Superfamily AB57_2137 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) AB57_2147 PF07687 Peptidase dimerisation domain AB57_2147 PF01546 Peptidase family M20/M25/M40 AB57_2149 PF02254 TrkA-N domain AB57_2149 PF00999 Sodium/hydrogen exchanger family AB57_2150 PF07995 Glucose / Sorbosone dehydrogenase AB57_2151 PF03466 LysR substrate binding domain AB57_2151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2152 PF00857 Isochorismatase family AB57_2155 PF07995 Glucose / Sorbosone dehydrogenase AB57_2156 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_2158 PF06314 Acetoacetate decarboxylase (ADC) AB57_2159 PF00106 short chain dehydrogenase AB57_2160 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AB57_2160 PF12833 Helix-turn-helix domain AB57_2161 PF00440 Bacterial regulatory proteins, tetR family AB57_2161 PF08359 YsiA-like protein, C-terminal region AB57_2162 PF12706 Beta-lactamase superfamily domain AB57_2164 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2166 PF00376 MerR family regulatory protein AB57_2166 PF09278 MerR, DNA binding AB57_2168 PF00106 short chain dehydrogenase AB57_2169 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_2169 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2170 PF00561 alpha/beta hydrolase fold AB57_2172 PF00171 Aldehyde dehydrogenase family AB57_2174 PF07690 Major Facilitator Superfamily AB57_2175 PF00920 Dehydratase family AB57_2176 PF00392 Bacterial regulatory proteins, gntR family AB57_2176 PF07729 FCD domain AB57_2178 PF03466 LysR substrate binding domain AB57_2178 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2179 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AB57_2179 PF13378 Enolase C-terminal domain-like AB57_2180 PF02426 Muconolactone delta-isomerase AB57_2181 PF00775 Dioxygenase AB57_2181 PF04444 Catechol dioxygenase N terminus AB57_2182 PF01144 Coenzyme A transferase AB57_2183 PF01144 Coenzyme A transferase AB57_2184 PF00108 Thiolase, N-terminal domain AB57_2184 PF02803 Thiolase, C-terminal domain AB57_2185 PF12146 Serine aminopeptidase, S33 AB57_2186 PF01804 Penicillin amidase AB57_2187 PF00171 Aldehyde dehydrogenase family AB57_2189 PF02727 Copper amine oxidase, N2 domain AB57_2189 PF01179 Copper amine oxidase, enzyme domain AB57_2189 PF07833 Copper amine oxidase N-terminal domain AB57_2189 PF02728 Copper amine oxidase, N3 domain AB57_2190 PF02311 AraC-like ligand binding domain AB57_2190 PF12833 Helix-turn-helix domain AB57_2191 PF01613 Flavin reductase like domain AB57_2192 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_2192 PF00175 Oxidoreductase NAD-binding domain AB57_2195 PF00355 Rieske [2Fe-2S] domain AB57_2195 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AB57_2198 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AB57_2199 PF01425 Amidase AB57_2202 PF07690 Major Facilitator Superfamily AB57_2204 PF00106 short chain dehydrogenase AB57_2207 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_2207 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_2207 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_2208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2208 PF03466 LysR substrate binding domain AB57_2209 PF09339 IclR helix-turn-helix domain AB57_2209 PF01614 Bacterial transcriptional regulator AB57_2210 PF00753 Metallo-beta-lactamase superfamily AB57_2212 PF04143 Sulphur transport AB57_2214 PF13360 PQQ-like domain AB57_2214 PF01011 PQQ enzyme repeat AB57_2215 PF04966 Carbohydrate-selective porin, OprB family AB57_2216 PF05048 Periplasmic copper-binding protein (NosD) AB57_2217 PF01487 Type I 3-dehydroquinase AB57_2218 PF00775 Dioxygenase AB57_2219 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AB57_2219 PF00775 Dioxygenase AB57_2220 PF02627 Carboxymuconolactone decarboxylase family AB57_2221 PF07690 Major Facilitator Superfamily AB57_2222 PF00561 alpha/beta hydrolase fold AB57_2223 PF10397 Adenylosuccinate lyase C-terminus AB57_2223 PF00206 Lyase AB57_2224 PF00108 Thiolase, N-terminal domain AB57_2224 PF02803 Thiolase, C-terminal domain AB57_2225 PF01144 Coenzyme A transferase AB57_2226 PF01144 Coenzyme A transferase AB57_2227 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AB57_2228 PF04977 Septum formation initiator AB57_2229 PF04239 Protein of unknown function (DUF421) AB57_2230 PF03952 Enolase, N-terminal domain AB57_2230 PF00113 Enolase, C-terminal TIM barrel domain AB57_2231 PF00793 DAHP synthetase I family AB57_2239 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_2239 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2242 PF00793 DAHP synthetase I family AB57_2243 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AB57_2244 PF02861 Clp amino terminal domain, pathogenicity island component AB57_2244 PF17871 AAA lid domain AB57_2244 PF07724 AAA domain (Cdc48 subfamily) AB57_2244 PF10431 C-terminal, D2-small domain, of ClpB protein AB57_2244 PF00004 ATPase family associated with various cellular activities (AAA) AB57_2245 PF02617 ATP-dependent Clp protease adaptor protein ClpS AB57_2247 PF01118 Semialdehyde dehydrogenase, NAD binding domain AB57_2247 PF02774 Semialdehyde dehydrogenase, dimerisation domain AB57_2251 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AB57_2252 PF00585 C-terminal regulatory domain of Threonine dehydratase AB57_2252 PF00291 Pyridoxal-phosphate dependent enzyme AB57_2253 PF02080 TrkA-C domain AB57_2253 PF02254 TrkA-N domain AB57_2254 PF02386 Cation transport protein AB57_2255 PF02253 Phospholipase A1 AB57_2256 PF05193 Peptidase M16 inactive domain AB57_2256 PF08367 Peptidase M16C associated AB57_2256 PF00675 Insulinase (Peptidase family M16) AB57_2259 PF00294 pfkB family carbohydrate kinase AB57_2261 PF07290 Protein of unknown function (DUF1449) AB57_2262 PF01654 Cytochrome bd terminal oxidase subunit I AB57_2263 PF02322 Cytochrome bd terminal oxidase subunit II AB57_2265 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AB57_2267 PF02881 SRP54-type protein, helical bundle domain AB57_2267 PF00448 SRP54-type protein, GTPase domain AB57_2273 PF00571 CBS domain AB57_2273 PF00478 IMP dehydrogenase / GMP reductase domain AB57_2274 PF00202 Aminotransferase class-III AB57_2275 PF00462 Glutaredoxin AB57_2277 PF03466 LysR substrate binding domain AB57_2277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2278 PF00557 Metallopeptidase family M24 AB57_2279 PF05525 Branched-chain amino acid transport protein AB57_2285 PF05524 PEP-utilising enzyme, N-terminal AB57_2285 PF02896 PEP-utilising enzyme, TIM barrel domain AB57_2285 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AB57_2285 PF00381 PTS HPr component phosphorylation site AB57_2285 PF00391 PEP-utilising enzyme, mobile domain AB57_2286 PF00294 pfkB family carbohydrate kinase AB57_2287 PF02378 Phosphotransferase system, EIIC AB57_2287 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AB57_2291 PF03707 Bacterial signalling protein N terminal repeat AB57_2291 PF00990 Diguanylate cyclase, GGDEF domain AB57_2291 PF00563 EAL domain AB57_2294 PF02586 SOS response associated peptidase (SRAP) AB57_2295 PF01740 STAS domain AB57_2295 PF00916 Sulfate permease family AB57_2296 PF05922 Peptidase inhibitor I9 AB57_2296 PF00082 Subtilase family AB57_2298 PF00324 Amino acid permease AB57_2299 PF00266 Aminotransferase class-V AB57_2300 PF01037 Lrp/AsnC ligand binding domain AB57_2305 PF13419 Haloacid dehalogenase-like hydrolase AB57_2306 PF01479 S4 domain AB57_2308 PF02631 RecX family AB57_2310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AB57_2310 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_2311 PF07977 FabA-like domain AB57_2312 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_2312 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AB57_2314 PF01103 Surface antigen AB57_2314 PF07244 Surface antigen variable number repeat AB57_2315 PF13180 PDZ domain AB57_2315 PF02163 Peptidase family M50 AB57_2315 PF17820 PDZ domain AB57_2316 PF13288 DXP reductoisomerase C-terminal domain AB57_2316 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AB57_2316 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AB57_2318 PF01255 Putative undecaprenyl diphosphate synthase AB57_2319 PF01765 Ribosome recycling factor AB57_2320 PF00696 Amino acid kinase family AB57_2321 PF04055 Radical SAM superfamily AB57_2321 PF18693 TRAM domain AB57_2321 PF00919 Uncharacterized protein family UPF0004 AB57_2323 PF00989 PAS fold AB57_2323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_2323 PF00512 His Kinase A (phospho-acceptor) domain AB57_2324 PF02954 Bacterial regulatory protein, Fis family AB57_2324 PF00158 Sigma-54 interaction domain AB57_2324 PF00072 Response regulator receiver domain AB57_2325 PF00440 Bacterial regulatory proteins, tetR family AB57_2326 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AB57_2326 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AB57_2327 PF02542 YgbB family AB57_2330 PF01266 FAD dependent oxidoreductase AB57_2334 PF00206 Lyase AB57_2334 PF10415 Fumarase C C-terminus AB57_2335 PF16363 GDP-mannose 4,6 dehydratase AB57_2336 PF02635 DsrE/DsrF-like family AB57_2340 PF00892 EamA-like transporter family AB57_2341 PF01638 HxlR-like helix-turn-helix AB57_2342 PF00155 Aminotransferase class I and II AB57_2342 PF00392 Bacterial regulatory proteins, gntR family AB57_2344 PF03454 MoeA C-terminal region (domain IV) AB57_2344 PF03453 MoeA N-terminal region (domain I and II) AB57_2344 PF00994 Probable molybdopterin binding domain AB57_2345 PF01967 MoaC family AB57_2345 PF00994 Probable molybdopterin binding domain AB57_2346 PF02391 MoaE protein AB57_2348 PF04055 Radical SAM superfamily AB57_2348 PF06463 Molybdenum Cofactor Synthesis C AB57_2349 PF00384 Molybdopterin oxidoreductase AB57_2349 PF01568 Molydopterin dinucleotide binding domain AB57_2349 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AB57_2350 PF12804 MobA-like NTP transferase domain AB57_2351 PF00384 Molybdopterin oxidoreductase AB57_2351 PF01568 Molydopterin dinucleotide binding domain AB57_2351 PF04324 BFD-like [2Fe-2S] binding domain AB57_2351 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AB57_2352 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2352 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AB57_2352 PF18267 Rubredoxin NAD+ reductase C-terminal domain AB57_2352 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AB57_2352 PF04324 BFD-like [2Fe-2S] binding domain AB57_2353 PF13806 Rieske-like [2Fe-2S] domain AB57_2353 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AB57_2353 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AB57_2353 PF18267 Rubredoxin NAD+ reductase C-terminal domain AB57_2353 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2353 PF04324 BFD-like [2Fe-2S] binding domain AB57_2354 PF00072 Response regulator receiver domain AB57_2354 PF00486 Transcriptional regulatory protein, C terminal AB57_2355 PF00005 ABC transporter AB57_2356 PF11799 impB/mucB/samB family C-terminal domain AB57_2356 PF13438 Domain of unknown function (DUF4113) AB57_2356 PF00817 impB/mucB/samB family AB57_2358 PF01220 Dehydroquinase class II AB57_2359 PF00364 Biotin-requiring enzyme AB57_2360 PF00289 Biotin carboxylase, N-terminal domain AB57_2360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AB57_2360 PF02785 Biotin carboxylase C-terminal domain AB57_2362 PF12832 MFS_1 like family AB57_2368 PF01645 Conserved region in glutamate synthase AB57_2371 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AB57_2371 PF01565 FAD binding domain AB57_2372 PF01451 Low molecular weight phosphotyrosine protein phosphatase AB57_2374 PF00465 Iron-containing alcohol dehydrogenase AB57_2375 PF03061 Thioesterase superfamily AB57_2376 PF05506 Domain of unknown function (DUF756) AB57_2376 PF04185 Phosphoesterase family AB57_2377 PF12169 DNA polymerase III subunits gamma and tau domain III AB57_2377 PF12170 DNA polymerase III tau subunit V interacting with alpha AB57_2377 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AB57_2378 PF07690 Major Facilitator Superfamily AB57_2383 PF00108 Thiolase, N-terminal domain AB57_2383 PF02803 Thiolase, C-terminal domain AB57_2385 PF03466 LysR substrate binding domain AB57_2385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2387 PF01810 LysE type translocator AB57_2388 PF01037 Lrp/AsnC ligand binding domain AB57_2389 PF03594 Benzoate membrane transport protein AB57_2390 PF02308 MgtC family AB57_2391 PF00690 Cation transporter/ATPase, N-terminus AB57_2391 PF00689 Cation transporting ATPase, C-terminus AB57_2395 PF00582 Universal stress protein family AB57_2396 PF12848 ABC transporter AB57_2396 PF00005 ABC transporter AB57_2401 PF07715 TonB-dependent Receptor Plug Domain AB57_2401 PF00593 TonB dependent receptor AB57_2407 PF00924 Mechanosensitive ion channel AB57_2408 PF07715 TonB-dependent Receptor Plug Domain AB57_2408 PF00593 TonB dependent receptor AB57_2409 PF00440 Bacterial regulatory proteins, tetR family AB57_2412 PF02224 Cytidylate kinase AB57_2414 PF01037 Lrp/AsnC ligand binding domain AB57_2416 PF01817 Chorismate mutase type II AB57_2421 PF13953 PapC C-terminal domain AB57_2421 PF13954 PapC N-terminal domain AB57_2421 PF00577 Outer membrane usher protein AB57_2424 PF11940 Domain of unknown function (DUF3458) Ig-like fold AB57_2424 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AB57_2424 PF01433 Peptidase family M1 domain AB57_2427 PF02110 Hydroxyethylthiazole kinase family AB57_2429 PF05970 PIF1-like helicase AB57_2429 PF14493 Helix-turn-helix domain AB57_2430 PF00465 Iron-containing alcohol dehydrogenase AB57_2434 PF00171 Aldehyde dehydrogenase family AB57_2435 PF13520 Amino acid permease AB57_2436 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AB57_2437 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AB57_2438 PF00117 Glutamine amidotransferase class-I AB57_2438 PF02540 NAD synthase AB57_2438 PF00958 GMP synthase C terminal domain AB57_2440 PF00749 tRNA synthetases class I (E and Q), catalytic domain AB57_2440 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AB57_2441 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AB57_2442 PF00149 Calcineurin-like phosphoesterase AB57_2444 PF00881 Nitroreductase family AB57_2446 PF17209 Hfq protein AB57_2448 PF08676 MutL C terminal dimerisation domain AB57_2448 PF01119 DNA mismatch repair protein, C-terminal domain AB57_2449 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AB57_2450 PF01479 S4 domain AB57_2450 PF00849 RNA pseudouridylate synthase AB57_2452 PF00849 RNA pseudouridylate synthase AB57_2452 PF01479 S4 domain AB57_2455 PF04284 Protein of unknown function (DUF441) AB57_2456 PF03466 LysR substrate binding domain AB57_2456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2459 PF07690 Major Facilitator Superfamily AB57_2460 PF00027 Cyclic nucleotide-binding domain AB57_2460 PF00520 Ion transport protein AB57_2462 PF00330 Aconitase family (aconitate hydratase) AB57_2462 PF11791 Aconitate B N-terminal domain AB57_2462 PF06434 Aconitate hydratase 2 N-terminus AB57_2465 PF01103 Surface antigen AB57_2465 PF07244 Surface antigen variable number repeat AB57_2465 PF17243 POTRA domain TamA domain 1 AB57_2466 PF07690 Major Facilitator Superfamily AB57_2467 PF03232 Ubiquinone biosynthesis protein COQ7 AB57_2469 PF00120 Glutamine synthetase, catalytic domain AB57_2470 PF00072 Response regulator receiver domain AB57_2470 PF00486 Transcriptional regulatory protein, C terminal AB57_2471 PF00512 His Kinase A (phospho-acceptor) domain AB57_2471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_2471 PF02702 Osmosensitive K+ channel His kinase sensor domain AB57_2471 PF13493 Domain of unknown function (DUF4118) AB57_2472 PF02669 K+-transporting ATPase, c chain AB57_2474 PF03814 Potassium-transporting ATPase A subunit AB57_2477 PF03109 ABC1 family AB57_2478 PF00899 ThiF family AB57_2479 PF01613 Flavin reductase like domain AB57_2480 PF13193 AMP-binding enzyme C-terminal domain AB57_2480 PF00501 AMP-binding enzyme AB57_2481 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_2481 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_2481 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_2482 PF00106 short chain dehydrogenase AB57_2483 PF12833 Helix-turn-helix domain AB57_2484 PF09084 NMT1/THI5 like AB57_2487 PF13847 Methyltransferase domain AB57_2487 PF17827 PrmC N-terminal domain AB57_2488 PF00472 RF-1 domain AB57_2488 PF03462 PCRF domain AB57_2490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2490 PF03466 LysR substrate binding domain AB57_2493 PF00296 Luciferase-like monooxygenase AB57_2495 PF13994 PgaD-like protein AB57_2496 PF00535 Glycosyl transferase family 2 AB57_2497 PF01522 Polysaccharide deacetylase AB57_2497 PF14883 Hypothetical glycosyl hydrolase family 13 AB57_2500 PF03618 Kinase/pyrophosphorylase AB57_2501 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AB57_2501 PF02896 PEP-utilising enzyme, TIM barrel domain AB57_2501 PF00391 PEP-utilising enzyme, mobile domain AB57_2503 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AB57_2503 PF06481 COX Aromatic Rich Motif AB57_2505 PF00115 Cytochrome C and Quinol oxidase polypeptide I AB57_2506 PF00510 Cytochrome c oxidase subunit III AB57_2507 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AB57_2508 PF01040 UbiA prenyltransferase family AB57_2509 PF01250 Ribosomal protein S6 AB57_2510 PF01084 Ribosomal protein S18 AB57_2511 PF01281 Ribosomal protein L9, N-terminal domain AB57_2511 PF03948 Ribosomal protein L9, C-terminal domain AB57_2512 PF00772 DnaB-like helicase N terminal domain AB57_2512 PF03796 DnaB-like helicase C terminal domain AB57_2513 PF01168 Alanine racemase, N-terminal domain AB57_2513 PF00842 Alanine racemase, C-terminal domain AB57_2515 PF01841 Transglutaminase-like superfamily AB57_2515 PF08379 Bacterial transglutaminase-like N-terminal region AB57_2517 PF14403 Circularly permuted ATP-grasp type 2 AB57_2520 PF01134 Glucose inhibited division protein A AB57_2520 PF13932 GidA associated domain AB57_2524 PF02954 Bacterial regulatory protein, Fis family AB57_2525 PF02142 MGS-like domain AB57_2525 PF01808 AICARFT/IMPCHase bienzyme AB57_2526 PF02843 Phosphoribosylglycinamide synthetase, C domain AB57_2526 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AB57_2526 PF02844 Phosphoribosylglycinamide synthetase, N domain AB57_2527 PF03180 NLPA lipoprotein AB57_2528 PF00005 ABC transporter AB57_2528 PF09383 NIL domain AB57_2529 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2530 PF00753 Metallo-beta-lactamase superfamily AB57_2530 PF16123 Hydroxyacylglutathione hydrolase C-terminus AB57_2532 PF00375 Sodium:dicarboxylate symporter family AB57_2536 PF07995 Glucose / Sorbosone dehydrogenase AB57_2537 PF00892 EamA-like transporter family AB57_2538 PF01177 Asp/Glu/Hydantoin racemase AB57_2542 PF08521 Two-component sensor kinase N-terminal AB57_2542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_2542 PF00512 His Kinase A (phospho-acceptor) domain AB57_2543 PF00072 Response regulator receiver domain AB57_2543 PF00486 Transcriptional regulatory protein, C terminal AB57_2550 PF00512 His Kinase A (phospho-acceptor) domain AB57_2550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_2550 PF00672 HAMP domain AB57_2551 PF00486 Transcriptional regulatory protein, C terminal AB57_2551 PF00072 Response regulator receiver domain AB57_2553 PF00576 HIUase/Transthyretin family AB57_2555 PF02470 MlaD protein AB57_2556 PF04403 Paraquat-inducible protein A AB57_2561 PF00083 Sugar (and other) transporter AB57_2561 PF08946 Osmosensory transporter coiled coil AB57_2573 PF07729 FCD domain AB57_2573 PF00392 Bacterial regulatory proteins, gntR family AB57_2576 PF00106 short chain dehydrogenase AB57_2577 PF00248 Aldo/keto reductase family AB57_2578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2578 PF03466 LysR substrate binding domain AB57_2580 PF03616 Sodium/glutamate symporter AB57_2581 PF00561 alpha/beta hydrolase fold AB57_2586 PF04076 Bacterial OB fold (BOF) protein AB57_2592 PF00324 Amino acid permease AB57_2593 PF00171 Aldehyde dehydrogenase family AB57_2594 PF00202 Aminotransferase class-III AB57_2595 PF03466 LysR substrate binding domain AB57_2595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2596 PF00069 Protein kinase domain AB57_2600 PF00814 Glycoprotease family AB57_2601 PF01165 Ribosomal protein S21 AB57_2602 PF09424 Yqey-like protein AB57_2603 PF01435 Peptidase family M48 AB57_2604 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AB57_2604 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AB57_2607 PF00156 Phosphoribosyl transferase domain AB57_2608 PF02674 Colicin V production protein AB57_2609 PF01180 Dihydroorotate dehydrogenase AB57_2614 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AB57_2614 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AB57_2615 PF00881 Nitroreductase family AB57_2617 PF00270 DEAD/DEAH box helicase AB57_2617 PF00271 Helicase conserved C-terminal domain AB57_2618 PF00313 'Cold-shock' DNA-binding domain AB57_2620 PF04545 Sigma-70, region 4 AB57_2620 PF00140 Sigma-70 factor, region 1.2 AB57_2620 PF04542 Sigma-70 region 2 AB57_2621 PF04241 Protein of unknown function (DUF423) AB57_2623 PF05690 Thiazole biosynthesis protein ThiG AB57_2625 PF03883 Peroxide stress protein YaaA AB57_2627 PF00753 Metallo-beta-lactamase superfamily AB57_2628 PF07687 Peptidase dimerisation domain AB57_2628 PF01546 Peptidase family M20/M25/M40 AB57_2630 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AB57_2631 PF01842 ACT domain AB57_2631 PF01817 Chorismate mutase type II AB57_2631 PF00800 Prephenate dehydratase AB57_2632 PF00756 Putative esterase AB57_2633 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_2633 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_2633 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_2634 PF00375 Sodium:dicarboxylate symporter family AB57_2635 PF02885 Glycosyl transferase family, helical bundle domain AB57_2635 PF00591 Glycosyl transferase family, a/b domain AB57_2636 PF07023 Protein of unknown function (DUF1315) AB57_2637 PF01513 ATP-NAD kinase AB57_2639 PF00905 Penicillin binding protein transpeptidase domain AB57_2639 PF00912 Transglycosylase AB57_2639 PF14814 Bifunctional transglycosylase second domain AB57_2641 PF00293 NUDIX domain AB57_2643 PF00512 His Kinase A (phospho-acceptor) domain AB57_2643 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_2643 PF08521 Two-component sensor kinase N-terminal AB57_2644 PF00072 Response regulator receiver domain AB57_2644 PF00486 Transcriptional regulatory protein, C terminal AB57_2646 PF00437 Type II/IV secretion system protein AB57_2648 PF18389 TrmO C-terminal domain AB57_2648 PF01980 tRNA-methyltransferase O AB57_2649 PF00970 Oxidoreductase FAD-binding domain AB57_2649 PF00175 Oxidoreductase NAD-binding domain AB57_2650 PF02567 Phenazine biosynthesis-like protein AB57_2651 PF00392 Bacterial regulatory proteins, gntR family AB57_2651 PF00155 Aminotransferase class I and II AB57_2653 PF00037 4Fe-4S binding domain AB57_2654 PF00893 Small Multidrug Resistance protein AB57_2657 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2658 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2659 PF00497 Bacterial extracellular solute-binding proteins, family 3 AB57_2660 PF03466 LysR substrate binding domain AB57_2660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2662 PF13533 Biotin-lipoyl like AB57_2663 PF00873 AcrB/AcrD/AcrF family AB57_2664 PF02321 Outer membrane efflux protein AB57_2665 PF00464 Serine hydroxymethyltransferase AB57_2682 PF01476 LysM domain AB57_2682 PF08525 Opacity-associated protein A N-terminal motif AB57_2682 PF01551 Peptidase family M23 AB57_2722 PF03796 DnaB-like helicase C terminal domain AB57_2722 PF00772 DnaB-like helicase N terminal domain AB57_2735 PF12684 PDDEXK-like domain of unknown function (DUF3799) AB57_2735 PF06630 Enterobacterial exodeoxyribonuclease VIII AB57_2742 PF00589 Phage integrase family AB57_2744 PF00005 ABC transporter AB57_2745 PF01061 ABC-2 type transporter AB57_2746 PF14489 QueF-like protein AB57_2746 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AB57_2748 PF01098 Cell cycle protein AB57_2749 PF13406 Transglycosylase SLT domain AB57_2750 PF03330 Lytic transglycolase AB57_2750 PF05036 Sporulation related domain AB57_2753 PF12833 Helix-turn-helix domain AB57_2755 PF00889 Elongation factor TS AB57_2756 PF00318 Ribosomal protein S2 AB57_2757 PF00557 Metallopeptidase family M24 AB57_2759 PF07690 Major Facilitator Superfamily AB57_2762 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AB57_2762 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2763 PF04055 Radical SAM superfamily AB57_2764 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_2764 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_2764 PF09317 Domain of unknown function (DUF1974) AB57_2767 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AB57_2767 PF05221 S-adenosyl-L-homocysteine hydrolase AB57_2768 PF02219 Methylenetetrahydrofolate reductase AB57_2769 PF04452 RNA methyltransferase AB57_2772 PF03707 Bacterial signalling protein N terminal repeat AB57_2772 PF00990 Diguanylate cyclase, GGDEF domain AB57_2772 PF00563 EAL domain AB57_2773 PF01515 Phosphate acetyl/butaryl transferase AB57_2773 PF00390 Malic enzyme, N-terminal domain AB57_2773 PF03949 Malic enzyme, NAD binding domain AB57_2774 PF12627 Probable RNA and SrmB- binding site of polymerase A AB57_2774 PF01743 Poly A polymerase head domain AB57_2775 PF13180 PDZ domain AB57_2776 PF01784 NIF3 (NGG1p interacting factor 3) AB57_2777 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AB57_2777 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AB57_2781 PF01040 UbiA prenyltransferase family AB57_2782 PF04345 Chorismate lyase AB57_2784 PF00854 POT family AB57_2786 PF00117 Glutamine amidotransferase class-I AB57_2787 PF11838 ERAP1-like C-terminal domain AB57_2787 PF01433 Peptidase family M1 domain AB57_2788 PF00593 TonB dependent receptor AB57_2788 PF07715 TonB-dependent Receptor Plug Domain AB57_2789 PF00591 Glycosyl transferase family, a/b domain AB57_2789 PF02885 Glycosyl transferase family, helical bundle domain AB57_2790 PF00218 Indole-3-glycerol phosphate synthase AB57_2793 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AB57_2793 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AB57_2794 PF00111 2Fe-2S iron-sulfur cluster binding domain AB57_2794 PF01799 [2Fe-2S] binding domain AB57_2796 PF00144 Beta-lactamase AB57_2799 PF05675 Protein of unknown function (DUF817) AB57_2800 PF01208 Uroporphyrinogen decarboxylase (URO-D) AB57_2802 PF00425 chorismate binding enzyme AB57_2804 PF00975 Thioesterase domain AB57_2805 PF00005 ABC transporter AB57_2805 PF00664 ABC transporter transmembrane region AB57_2806 PF00664 ABC transporter transmembrane region AB57_2806 PF00005 ABC transporter AB57_2808 PF00282 Pyridoxal-dependent decarboxylase conserved domain AB57_2809 PF00857 Isochorismatase family AB57_2809 PF00550 Phosphopantetheine attachment site AB57_2810 PF00501 AMP-binding enzyme AB57_2810 PF13193 AMP-binding enzyme C-terminal domain AB57_2811 PF00501 AMP-binding enzyme AB57_2811 PF00550 Phosphopantetheine attachment site AB57_2811 PF00668 Condensation domain AB57_2812 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AB57_2813 PF00593 TonB dependent receptor AB57_2813 PF07715 TonB-dependent Receptor Plug Domain AB57_2814 PF01497 Periplasmic binding protein AB57_2815 PF00005 ABC transporter AB57_2816 PF01032 FecCD transport family AB57_2817 PF01032 FecCD transport family AB57_2819 PF00975 Thioesterase domain AB57_2819 PF00501 AMP-binding enzyme AB57_2819 PF00550 Phosphopantetheine attachment site AB57_2819 PF13193 AMP-binding enzyme C-terminal domain AB57_2819 PF00668 Condensation domain AB57_2820 PF00501 AMP-binding enzyme AB57_2820 PF13193 AMP-binding enzyme C-terminal domain AB57_2820 PF00668 Condensation domain AB57_2820 PF00550 Phosphopantetheine attachment site AB57_2821 PF08348 YheO-like PAS domain AB57_2821 PF13309 HTH domain AB57_2823 PF00291 Pyridoxal-phosphate dependent enzyme AB57_2825 PF02678 Pirin AB57_2825 PF17954 Quercetinase C-terminal cupin domain AB57_2832 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AB57_2834 PF00892 EamA-like transporter family AB57_2838 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AB57_2838 PF01266 FAD dependent oxidoreductase AB57_2839 PF18113 Rubredoxin binding C-terminal domain AB57_2839 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2841 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AB57_2841 PF00355 Rieske [2Fe-2S] domain AB57_2842 PF02028 BCCT, betaine/carnitine/choline family transporter AB57_2843 PF02028 BCCT, betaine/carnitine/choline family transporter AB57_2844 PF00557 Metallopeptidase family M24 AB57_2845 PF03466 LysR substrate binding domain AB57_2845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2846 PF04328 Selenoprotein, putative AB57_2847 PF13722 5TM C-terminal transporter carbon starvation CstA AB57_2847 PF02554 Carbon starvation protein CstA AB57_2848 PF01132 Elongation factor P (EF-P) OB domain AB57_2848 PF08207 Elongation factor P (EF-P) KOW-like domain AB57_2848 PF09285 Elongation factor P, C-terminal AB57_2849 PF04055 Radical SAM superfamily AB57_2852 PF00563 EAL domain AB57_2852 PF12792 CSS motif domain associated with EAL AB57_2853 PF01197 Ribosomal protein L31 AB57_2854 PF13593 SBF-like CPA transporter family (DUF4137) AB57_2855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AB57_2856 PF07690 Major Facilitator Superfamily AB57_2857 PF13654 AAA domain AB57_2857 PF05362 Lon protease (S16) C-terminal proteolytic domain AB57_2858 PF03466 LysR substrate binding domain AB57_2858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2859 PF01476 LysM domain AB57_2859 PF01551 Peptidase family M23 AB57_2860 PF01975 Survival protein SurE AB57_2863 PF07943 Penicillin-binding protein 5, C-terminal domain AB57_2863 PF00768 D-alanyl-D-alanine carboxypeptidase AB57_2864 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_2865 PF00293 NUDIX domain AB57_2865 PF13344 Haloacid dehalogenase-like hydrolase AB57_2867 PF04356 Protein of unknown function (DUF489) AB57_2868 PF00206 Lyase AB57_2868 PF08328 Adenylosuccinate lyase C-terminal AB57_2871 PF01343 Peptidase family S49 AB57_2871 PF08496 Peptidase family S49 N-terminal AB57_2872 PF00005 ABC transporter AB57_2873 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2874 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2875 PF12849 PBP superfamily domain AB57_2876 PF00324 Amino acid permease AB57_2877 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AB57_2877 PF00205 Thiamine pyrophosphate enzyme, central domain AB57_2877 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AB57_2878 PF01037 Lrp/AsnC ligand binding domain AB57_2879 PF00171 Aldehyde dehydrogenase family AB57_2880 PF00282 Pyridoxal-dependent decarboxylase conserved domain AB57_2881 PF00202 Aminotransferase class-III AB57_2883 PF17754 MftR C-terminal domain AB57_2883 PF00440 Bacterial regulatory proteins, tetR family AB57_2885 PF00487 Fatty acid desaturase AB57_2890 PF00440 Bacterial regulatory proteins, tetR family AB57_2892 PF18337 RapA N-terminal Tudor like domain AB57_2892 PF18339 RapA N-terminal Tudor like domain 1 AB57_2892 PF00176 SNF2 family N-terminal domain AB57_2892 PF00271 Helicase conserved C-terminal domain AB57_2892 PF12137 RNA polymerase recycling family C-terminal AB57_2893 PF00849 RNA pseudouridylate synthase AB57_2895 PF00202 Aminotransferase class-III AB57_2896 PF02581 Thiamine monophosphate synthase AB57_2902 PF09615 CRISPR-associated protein (Cas_Csy3) AB57_2903 PF09614 CRISPR-associated protein (Cas_Csy2) AB57_2904 PF09611 CRISPR-associated protein (Cas_Csy1) AB57_2906 PF01867 CRISPR associated protein Cas1 AB57_2911 PF05193 Peptidase M16 inactive domain AB57_2911 PF00675 Insulinase (Peptidase family M16) AB57_2912 PF02567 Phenazine biosynthesis-like protein AB57_2914 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2914 PF03466 LysR substrate binding domain AB57_2915 PF06779 Uncharacterised MFS-type transporter YbfB AB57_2919 PF00180 Isocitrate/isopropylmalate dehydrogenase AB57_2920 PF00849 RNA pseudouridylate synthase AB57_2921 PF03971 Monomeric isocitrate dehydrogenase AB57_2923 PF00768 D-alanyl-D-alanine carboxypeptidase AB57_2923 PF07943 Penicillin-binding protein 5, C-terminal domain AB57_2924 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_2925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AB57_2933 PF02350 UDP-N-acetylglucosamine 2-epimerase AB57_2936 PF03060 Nitronate monooxygenase AB57_2937 PF01207 Dihydrouridine synthase (Dus) AB57_2938 PF07759 Protein of unknown function (DUF1615) AB57_2940 PF01472 PUA domain AB57_2940 PF00696 Amino acid kinase family AB57_2941 PF01926 50S ribosome-binding GTPase AB57_2941 PF01018 GTP1/OBG AB57_2944 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AB57_2944 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AB57_2945 PF00892 EamA-like transporter family AB57_2947 PF17757 UvrB interaction domain AB57_2947 PF12344 Ultra-violet resistance protein B AB57_2947 PF04851 Type III restriction enzyme, res subunit AB57_2947 PF02151 UvrB/uvrC motif AB57_2947 PF00271 Helicase conserved C-terminal domain AB57_2949 PF00990 Diguanylate cyclase, GGDEF domain AB57_2949 PF17151 Periplasmic sensor domain AB57_2955 PF00106 short chain dehydrogenase AB57_2956 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AB57_2957 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AB57_2958 PF11967 Recombination protein O N terminal AB57_2958 PF02565 Recombination protein O C terminal AB57_2960 PF07650 KH domain AB57_2960 PF01926 50S ribosome-binding GTPase AB57_2961 PF14622 Ribonuclease-III-like AB57_2961 PF00035 Double-stranded RNA binding motif AB57_2963 PF10502 Signal peptidase, peptidase S26 AB57_2964 PF00679 Elongation factor G C-terminus AB57_2964 PF03144 Elongation factor Tu domain 2 AB57_2964 PF06421 GTP-binding protein LepA C-terminus AB57_2964 PF00009 Elongation factor Tu GTP binding domain AB57_2966 PF13180 PDZ domain AB57_2967 PF00890 FAD binding domain AB57_2967 PF02910 Fumarate reductase flavoprotein C-term AB57_2969 PF02223 Thymidylate kinase AB57_2970 PF02618 YceG-like family AB57_2971 PF01063 Amino-transferase class IV AB57_2975 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2976 PF00528 Binding-protein-dependent transport system inner membrane component AB57_2977 PF00005 ABC transporter AB57_2977 PF12857 TOBE-like domain AB57_2978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_2978 PF03466 LysR substrate binding domain AB57_2980 PF14602 Hexapeptide repeat of succinyl-transferase AB57_2980 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_2980 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AB57_2982 PF06508 Queuosine biosynthesis protein QueC AB57_2985 PF00578 AhpC/TSA family AB57_2987 PF00293 NUDIX domain AB57_2987 PF01467 Cytidylyltransferase-like AB57_2988 PF01784 NIF3 (NGG1p interacting factor 3) AB57_2989 PF00378 Enoyl-CoA hydratase/isomerase AB57_2991 PF07690 Major Facilitator Superfamily AB57_2992 PF02769 AIR synthase related protein, C-terminal domain AB57_2992 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AB57_2992 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AB57_2993 PF01966 HD domain AB57_2994 PF01330 RuvA N terminal domain AB57_2994 PF07499 RuvA, C-terminal domain AB57_2995 PF05491 RuvB C-terminal winged helix domain AB57_2995 PF05496 Holliday junction DNA helicase RuvB P-loop domain AB57_2995 PF17864 RuvB AAA lid domain AB57_2996 PF07687 Peptidase dimerisation domain AB57_2996 PF01546 Peptidase family M20/M25/M40 AB57_2997 PF03061 Thioesterase superfamily AB57_2998 PF01618 MotA/TolQ/ExbB proton channel family AB57_2999 PF02472 Biopolymer transport protein ExbD/TolR AB57_3002 PF07676 WD40-like Beta Propeller Repeat AB57_3002 PF04052 TolB amino-terminal domain AB57_3003 PF00691 OmpA family AB57_3005 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AB57_3006 PF00588 SpoU rRNA Methylase family AB57_3006 PF08032 RNA 2'-O ribose methyltransferase substrate binding AB57_3012 PF00308 Bacterial dnaA protein AB57_3012 PF08299 Bacterial dnaA protein helix-turn-helix AB57_3012 PF11638 DnaA N-terminal domain AB57_3013 PF01594 AI-2E family transporter AB57_3014 PF00586 AIR synthase related protein, N-terminal domain AB57_3014 PF02769 AIR synthase related protein, C-terminal domain AB57_3015 PF00551 Formyl transferase AB57_3016 PF12697 Alpha/beta hydrolase family AB57_3017 PF01343 Peptidase family S49 AB57_3017 PF06965 Na+/H+ antiporter 1 AB57_3020 PF13567 Domain of unknown function (DUF4131) AB57_3020 PF03772 Competence protein AB57_3020 PF00753 Metallo-beta-lactamase superfamily AB57_3021 PF00005 ABC transporter AB57_3022 PF12704 MacB-like periplasmic core domain AB57_3022 PF02687 FtsX-like permease family AB57_3024 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AB57_3027 PF00266 Aminotransferase class-V AB57_3030 PF13533 Biotin-lipoyl like AB57_3034 PF00535 Glycosyl transferase family 2 AB57_3038 PF01012 Electron transfer flavoprotein domain AB57_3038 PF00766 Electron transfer flavoprotein FAD-binding domain AB57_3039 PF01012 Electron transfer flavoprotein domain AB57_3040 PF02899 Phage integrase, N-terminal SAM-like domain AB57_3040 PF00589 Phage integrase family AB57_3041 PF01810 LysE type translocator AB57_3042 PF00561 alpha/beta hydrolase fold AB57_3043 PF01678 Diaminopimelate epimerase AB57_3044 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AB57_3044 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AB57_3046 PF00324 Amino acid permease AB57_3048 PF18073 Rubredoxin metal binding domain AB57_3050 PF00152 tRNA synthetases class II (D, K and N) AB57_3051 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AB57_3051 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AB57_3051 PF11890 Domain of unknown function (DUF3410) AB57_3052 PF06803 Protein of unknown function (DUF1232) AB57_3053 PF02634 FdhD/NarQ family AB57_3054 PF00384 Molybdopterin oxidoreductase AB57_3056 PF02595 Glycerate kinase family AB57_3060 PF00881 Nitroreductase family AB57_3066 PF13193 AMP-binding enzyme C-terminal domain AB57_3066 PF00501 AMP-binding enzyme AB57_3066 PF00975 Thioesterase domain AB57_3066 PF00550 Phosphopantetheine attachment site AB57_3066 PF00668 Condensation domain AB57_3068 PF01272 Transcription elongation factor, GreA/GreB, C-term AB57_3068 PF03449 Transcription elongation factor, N-terminal AB57_3069 PF00497 Bacterial extracellular solute-binding proteins, family 3 AB57_3069 PF01464 Transglycosylase SLT domain AB57_3071 PF01171 PP-loop family AB57_3072 PF01464 Transglycosylase SLT domain AB57_3073 PF01435 Peptidase family M48 AB57_3075 PF00873 AcrB/AcrD/AcrF family AB57_3076 PF03009 Glycerophosphoryl diester phosphodiesterase family AB57_3077 PF00753 Metallo-beta-lactamase superfamily AB57_3078 PF01219 Prokaryotic diacylglycerol kinase AB57_3080 PF00166 Chaperonin 10 Kd subunit AB57_3083 PF00149 Calcineurin-like phosphoesterase AB57_3084 PF00781 Diacylglycerol kinase catalytic domain AB57_3085 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AB57_3085 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AB57_3086 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AB57_3086 PF01266 FAD dependent oxidoreductase AB57_3087 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AB57_3087 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AB57_3088 PF00083 Sugar (and other) transporter AB57_3091 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AB57_3091 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AB57_3092 PF16655 PhoD-like phosphatase, N-terminal domain AB57_3092 PF09423 PhoD-like phosphatase AB57_3095 PF00809 Pterin binding enzyme AB57_3096 PF01434 Peptidase family M41 AB57_3096 PF06480 FtsH Extracellular AB57_3096 PF17862 AAA+ lid domain AB57_3096 PF00004 ATPase family associated with various cellular activities (AAA) AB57_3097 PF01728 FtsJ-like methyltransferase AB57_3098 PF01985 CRS1 / YhbY (CRM) domain AB57_3101 PF00117 Glutamine amidotransferase class-I AB57_3101 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AB57_3102 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AB57_3102 PF02142 MGS-like domain AB57_3102 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AB57_3103 PF01272 Transcription elongation factor, GreA/GreB, C-term AB57_3103 PF03449 Transcription elongation factor, N-terminal AB57_3104 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_3105 PF00582 Universal stress protein family AB57_3106 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AB57_3109 PF09587 Bacterial capsule synthesis protein PGA_cap AB57_3114 PF13737 Transposase DDE domain AB57_3115 PF00999 Sodium/hydrogen exchanger family AB57_3116 PF04228 Putative neutral zinc metallopeptidase AB57_3117 PF05661 Protein of unknown function (DUF808) AB57_3118 PF00579 tRNA synthetases class I (W and Y) AB57_3122 PF02629 CoA binding domain AB57_3122 PF00549 CoA-ligase AB57_3123 PF08442 ATP-grasp domain AB57_3123 PF00549 CoA-ligase AB57_3124 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_3124 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AB57_3125 PF02817 e3 binding domain AB57_3125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AB57_3125 PF00364 Biotin-requiring enzyme AB57_3126 PF16078 2-oxoglutarate dehydrogenase N-terminus AB57_3126 PF00676 Dehydrogenase E1 component AB57_3126 PF16870 2-oxoglutarate dehydrogenase C-terminal AB57_3126 PF02779 Transketolase, pyrimidine binding domain AB57_3128 PF13085 2Fe-2S iron-sulfur cluster binding domain AB57_3129 PF00890 FAD binding domain AB57_3129 PF02910 Fumarate reductase flavoprotein C-term AB57_3130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AB57_3131 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AB57_3138 PF04359 Protein of unknown function (DUF493) AB57_3139 PF03099 Biotin/lipoate A/B protein ligase family AB57_3141 PF00465 Iron-containing alcohol dehydrogenase AB57_3142 PF13520 Amino acid permease AB57_3143 PF03358 NADPH-dependent FMN reductase AB57_3144 PF01638 HxlR-like helix-turn-helix AB57_3145 PF00588 SpoU rRNA Methylase family AB57_3146 PF10414 Sirohaem synthase dimerisation region AB57_3146 PF14824 Sirohaem biosynthesis protein central AB57_3146 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AB57_3147 PF02403 Seryl-tRNA synthetase N-terminal domain AB57_3147 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AB57_3149 PF03548 Outer membrane lipoprotein carrier protein LolA AB57_3150 PF01016 Ribosomal L27 protein AB57_3151 PF00829 Ribosomal prokaryotic L21 protein AB57_3153 PF00348 Polyprenyl synthetase AB57_3155 PF01569 PAP2 superfamily AB57_3156 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AB57_3156 PF00529 HlyD membrane-fusion protein of T1SS AB57_3157 PF00873 AcrB/AcrD/AcrF family AB57_3158 PF02321 Outer membrane efflux protein AB57_3159 PF01906 Putative heavy-metal-binding AB57_3161 PF01906 Putative heavy-metal-binding AB57_3164 PF00133 tRNA synthetases class I (I, L, M and V) AB57_3164 PF10458 Valyl tRNA synthetase tRNA binding arm AB57_3164 PF08264 Anticodon-binding domain of tRNA AB57_3169 PF03466 LysR substrate binding domain AB57_3169 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_3170 PF00909 Ammonium Transporter Family AB57_3172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3172 PF08521 Two-component sensor kinase N-terminal AB57_3172 PF00512 His Kinase A (phospho-acceptor) domain AB57_3173 PF00072 Response regulator receiver domain AB57_3173 PF00486 Transcriptional regulatory protein, C terminal AB57_3174 PF08019 Phosphoethanolamine transferase EptA/EptB AB57_3174 PF00884 Sulfatase AB57_3178 PF01734 Patatin-like phospholipase AB57_3180 PF01145 SPFH domain / Band 7 family AB57_3181 PF04237 YjbR AB57_3182 PF00348 Polyprenyl synthetase AB57_3183 PF04303 PrpF protein AB57_3185 PF00324 Amino acid permease AB57_3187 PF00589 Phage integrase family AB57_3187 PF13356 Arm DNA-binding domain AB57_3237 PF00149 Calcineurin-like phosphoesterase AB57_3246 PF00772 DnaB-like helicase N terminal domain AB57_3246 PF14528 LAGLIDADG-like domain AB57_3246 PF03796 DnaB-like helicase C terminal domain AB57_3253 PF02384 N-6 DNA Methylase AB57_3253 PF12161 HsdM N-terminal domain AB57_3265 PF01965 DJ-1/PfpI family AB57_3266 PF08990 Erythronolide synthase docking AB57_3266 PF08240 Alcohol dehydrogenase GroES-like domain AB57_3266 PF00698 Acyl transferase domain AB57_3266 PF09277 Erythronolide synthase, docking AB57_3266 PF14765 Polyketide synthase dehydratase AB57_3266 PF00550 Phosphopantetheine attachment site AB57_3266 PF16197 Ketoacyl-synthetase C-terminal extension AB57_3266 PF02801 Beta-ketoacyl synthase, C-terminal domain AB57_3266 PF00109 Beta-ketoacyl synthase, N-terminal domain AB57_3266 PF08659 KR domain AB57_3267 PF12833 Helix-turn-helix domain AB57_3267 PF06719 AraC-type transcriptional regulator N-terminus AB57_3268 PF02673 Bacitracin resistance protein BacA AB57_3273 PF02525 Flavodoxin-like fold AB57_3276 PF01507 Phosphoadenosine phosphosulfate reductase family AB57_3277 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AB57_3277 PF06974 Protein of unknown function (DUF1298) AB57_3279 PF00575 S1 RNA binding domain AB57_3279 PF10150 Ribonuclease E/G family AB57_3280 PF02545 Maf-like protein AB57_3282 PF04085 rod shape-determining protein MreC AB57_3284 PF02686 Glu-tRNAGln amidotransferase C subunit AB57_3285 PF01425 Amidase AB57_3286 PF02934 GatB/GatE catalytic domain AB57_3286 PF02637 GatB domain AB57_3291 PF05992 SbmA/BacA-like family AB57_3292 PF13291 ACT domain AB57_3292 PF00291 Pyridoxal-phosphate dependent enzyme AB57_3293 PF01734 Patatin-like phospholipase AB57_3294 PF01235 Sodium:alanine symporter family AB57_3297 PF00881 Nitroreductase family AB57_3298 PF07690 Major Facilitator Superfamily AB57_3299 PF12805 FUSC-like inner membrane protein yccS AB57_3301 PF00258 Flavodoxin AB57_3301 PF00667 FAD binding domain AB57_3301 PF00175 Oxidoreductase NAD-binding domain AB57_3303 PF17969 L,D-transpeptidase C-terminal domain AB57_3303 PF03734 L,D-transpeptidase catalytic domain AB57_3304 PF04304 Protein of unknown function (DUF454) AB57_3306 PF08085 Entericidin EcnA/B family AB57_3307 PF07687 Peptidase dimerisation domain AB57_3307 PF01546 Peptidase family M20/M25/M40 AB57_3309 PF04055 Radical SAM superfamily AB57_3309 PF06969 HemN C-terminal domain AB57_3311 PF00072 Response regulator receiver domain AB57_3311 PF01627 Hpt domain AB57_3311 PF01584 CheW-like domain AB57_3311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3312 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AB57_3312 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AB57_3313 PF01584 CheW-like domain AB57_3314 PF00072 Response regulator receiver domain AB57_3315 PF00072 Response regulator receiver domain AB57_3318 PF00873 AcrB/AcrD/AcrF family AB57_3319 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AB57_3319 PF03129 Anticodon binding domain AB57_3319 PF04073 Aminoacyl-tRNA editing domain AB57_3320 PF07411 Domain of unknown function (DUF1508) AB57_3321 PF08274 PhnA Zinc-Ribbon AB57_3321 PF03831 PhnA domain AB57_3322 PF04343 Protein of unknown function, DUF488 AB57_3324 PF01571 Aminomethyltransferase folate-binding domain AB57_3325 PF10411 Disulfide bond isomerase protein N-terminus AB57_3325 PF13098 Thioredoxin-like domain AB57_3328 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_3329 PF07715 TonB-dependent Receptor Plug Domain AB57_3329 PF00593 TonB dependent receptor AB57_3330 PF02245 Methylpurine-DNA glycosylase (MPG) AB57_3332 PF06827 Zinc finger found in FPG and IleRS AB57_3332 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AB57_3332 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AB57_3335 PF01741 Large-conductance mechanosensitive channel, MscL AB57_3338 PF00860 Permease family AB57_3341 PF00324 Amino acid permease AB57_3342 PF01139 tRNA-splicing ligase RtcB AB57_3344 PF13505 Outer membrane protein beta-barrel domain AB57_3344 PF00691 OmpA family AB57_3346 PF00108 Thiolase, N-terminal domain AB57_3346 PF02803 Thiolase, C-terminal domain AB57_3348 PF00893 Small Multidrug Resistance protein AB57_3350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AB57_3350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AB57_3351 PF01011 PQQ enzyme repeat AB57_3353 PF04966 Carbohydrate-selective porin, OprB family AB57_3354 PF02515 CoA-transferase family III AB57_3355 PF02311 AraC-like ligand binding domain AB57_3355 PF12833 Helix-turn-helix domain AB57_3356 PF02803 Thiolase, C-terminal domain AB57_3356 PF00108 Thiolase, N-terminal domain AB57_3357 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AB57_3357 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AB57_3357 PF00378 Enoyl-CoA hydratase/isomerase AB57_3360 PF13673 Acetyltransferase (GNAT) domain AB57_3363 PF03006 Haemolysin-III related AB57_3364 PF00083 Sugar (and other) transporter AB57_3364 PF07690 Major Facilitator Superfamily AB57_3366 PF01043 SecA preprotein cross-linking domain AB57_3366 PF02810 SEC-C motif AB57_3366 PF07516 SecA Wing and Scaffold domain AB57_3366 PF07517 SecA DEAD-like domain AB57_3367 PF00578 AhpC/TSA family AB57_3367 PF10417 C-terminal domain of 1-Cys peroxiredoxin AB57_3368 PF00753 Metallo-beta-lactamase superfamily AB57_3371 PF02875 Mur ligase family, glutamate ligase domain AB57_3371 PF08245 Mur ligase middle domain AB57_3372 PF01039 Carboxyl transferase domain AB57_3373 PF00290 Tryptophan synthase alpha chain AB57_3379 PF00291 Pyridoxal-phosphate dependent enzyme AB57_3380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AB57_3381 PF07715 TonB-dependent Receptor Plug Domain AB57_3381 PF00593 TonB dependent receptor AB57_3382 PF01923 Cobalamin adenosyltransferase AB57_3386 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AB57_3387 PF00072 Response regulator receiver domain AB57_3387 PF00486 Transcriptional regulatory protein, C terminal AB57_3388 PF00512 His Kinase A (phospho-acceptor) domain AB57_3388 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3388 PF00672 HAMP domain AB57_3390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_3390 PF12806 Acetyl-CoA dehydrogenase C-terminal like AB57_3390 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_3390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_3391 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_3391 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_3391 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_3391 PF12806 Acetyl-CoA dehydrogenase C-terminal like AB57_3392 PF06146 Phosphate-starvation-inducible E AB57_3396 PF00593 TonB dependent receptor AB57_3396 PF07715 TonB-dependent Receptor Plug Domain AB57_3398 PF02938 GAD domain AB57_3398 PF01336 OB-fold nucleic acid binding domain AB57_3398 PF00152 tRNA synthetases class II (D, K and N) AB57_3403 PF00534 Glycosyl transferases group 1 AB57_3403 PF13439 Glycosyltransferase Family 4 AB57_3405 PF00535 Glycosyl transferase family 2 AB57_3406 PF01522 Polysaccharide deacetylase AB57_3409 PF01063 Amino-transferase class IV AB57_3410 PF08335 GlnD PII-uridylyltransferase AB57_3410 PF03710 Glutamate-ammonia ligase adenylyltransferase AB57_3411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3411 PF07689 KaiB domain AB57_3411 PF00512 His Kinase A (phospho-acceptor) domain AB57_3412 PF02547 Queuosine biosynthesis protein AB57_3415 PF01702 Queuine tRNA-ribosyltransferase AB57_3416 PF02699 Preprotein translocase subunit AB57_3417 PF13721 SecD export protein N-terminal TM region AB57_3417 PF02355 Protein export membrane protein AB57_3417 PF07549 SecD/SecF GG Motif AB57_3418 PF02355 Protein export membrane protein AB57_3418 PF07549 SecD/SecF GG Motif AB57_3419 PF04127 DNA / pantothenate metabolism flavoprotein AB57_3419 PF02441 Flavoprotein AB57_3420 PF04002 RadC-like JAB domain AB57_3422 PF01062 Bestrophin, RFP-TM, chloride channel AB57_3423 PF02811 PHP domain AB57_3424 PF04279 Intracellular septation protein A AB57_3425 PF03795 YCII-related domain AB57_3428 PF01266 FAD dependent oxidoreductase AB57_3428 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AB57_3429 PF04461 Protein of unknown function (DUF520) AB57_3431 PF03061 Thioesterase superfamily AB57_3432 PF00085 Thioredoxin AB57_3433 PF00561 alpha/beta hydrolase fold AB57_3434 PF04273 Putative phosphatase (DUF442) AB57_3434 PF00753 Metallo-beta-lactamase superfamily AB57_3436 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_3436 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AB57_3439 PF00990 Diguanylate cyclase, GGDEF domain AB57_3439 PF17152 Periplasmic sensor domain AB57_3440 PF00691 OmpA family AB57_3440 PF01389 OmpA-like transmembrane domain AB57_3441 PF10518 TAT (twin-arginine translocation) pathway signal sequence AB57_3441 PF00149 Calcineurin-like phosphoesterase AB57_3442 PF13091 PLD-like domain AB57_3444 PF01926 50S ribosome-binding GTPase AB57_3444 PF16360 GTP-binding GTPase Middle Region AB57_3444 PF13167 GTP-binding GTPase N-terminal AB57_3448 PF00149 Calcineurin-like phosphoesterase AB57_3449 PF00398 Ribosomal RNA adenine dimethylase AB57_3450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AB57_3451 PF00572 Ribosomal protein L13 AB57_3452 PF00380 Ribosomal protein S9/S16 AB57_3453 PF00043 Glutathione S-transferase, C-terminal domain AB57_3453 PF13417 Glutathione S-transferase, N-terminal domain AB57_3454 PF04386 Stringent starvation protein B AB57_3456 PF02785 Biotin carboxylase C-terminal domain AB57_3456 PF00289 Biotin carboxylase, N-terminal domain AB57_3456 PF00364 Biotin-requiring enzyme AB57_3456 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AB57_3458 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_3458 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_3458 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_3459 PF01039 Carboxyl transferase domain AB57_3463 PF17932 Tetracyclin repressor-like, C-terminal domain AB57_3463 PF00440 Bacterial regulatory proteins, tetR family AB57_3464 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_3464 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_3464 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_3469 PF01066 CDP-alcohol phosphatidyltransferase AB57_3470 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AB57_3474 PF00056 lactate/malate dehydrogenase, NAD binding domain AB57_3474 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AB57_3476 PF10145 Phage-related minor tail protein AB57_3476 PF01551 Peptidase family M23 AB57_3476 PF01464 Transglycosylase SLT domain AB57_3477 PF00919 Uncharacterized protein family UPF0004 AB57_3477 PF01938 TRAM domain AB57_3477 PF04055 Radical SAM superfamily AB57_3478 PF02562 PhoH-like protein AB57_3479 PF02130 Uncharacterized protein family UPF0054 AB57_3484 PF03358 NADPH-dependent FMN reductase AB57_3485 PF03631 Virulence factor BrkB AB57_3486 PF00892 EamA-like transporter family AB57_3487 PF12833 Helix-turn-helix domain AB57_3488 PF01557 Fumarylacetoacetate (FAA) hydrolase family AB57_3493 PF08206 Ribonuclease B OB domain AB57_3493 PF00773 RNB domain AB57_3493 PF00575 S1 RNA binding domain AB57_3493 PF08461 Ribonuclease R winged-helix domain AB57_3493 PF17876 Cold shock domain AB57_3494 PF01432 Peptidase family M3 AB57_3495 PF09526 Probable metal-binding protein (DUF2387) AB57_3501 PF03937 Flavinator of succinate dehydrogenase AB57_3502 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_3502 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_3502 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_3503 PF00743 Flavin-binding monooxygenase-like AB57_3504 PF01196 Ribosomal protein L17 AB57_3505 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AB57_3505 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AB57_3505 PF01000 RNA polymerase Rpb3/RpoA insert domain AB57_3506 PF01479 S4 domain AB57_3506 PF00163 Ribosomal protein S4/S9 N-terminal domain AB57_3507 PF00411 Ribosomal protein S11 AB57_3508 PF00416 Ribosomal protein S13/S18 AB57_3509 PF00444 Ribosomal protein L36 AB57_3510 PF00344 SecY translocase AB57_3511 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AB57_3512 PF00327 Ribosomal protein L30p/L7e AB57_3513 PF03719 Ribosomal protein S5, C-terminal domain AB57_3513 PF00333 Ribosomal protein S5, N-terminal domain AB57_3514 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AB57_3515 PF00347 Ribosomal protein L6 AB57_3516 PF00410 Ribosomal protein S8 AB57_3517 PF00253 Ribosomal protein S14p/S29e AB57_3518 PF00673 ribosomal L5P family C-terminus AB57_3518 PF00281 Ribosomal protein L5 AB57_3519 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AB57_3519 PF00467 KOW motif AB57_3520 PF00238 Ribosomal protein L14p/L23e AB57_3521 PF00366 Ribosomal protein S17 AB57_3522 PF00831 Ribosomal L29 protein AB57_3523 PF00252 Ribosomal protein L16p/L10e AB57_3524 PF00189 Ribosomal protein S3, C-terminal domain AB57_3524 PF07650 KH domain AB57_3525 PF00237 Ribosomal protein L22p/L17e AB57_3526 PF00203 Ribosomal protein S19 AB57_3528 PF00276 Ribosomal protein L23 AB57_3529 PF00573 Ribosomal protein L4/L1 family AB57_3530 PF00297 Ribosomal protein L3 AB57_3531 PF00338 Ribosomal protein S10p/S20e AB57_3532 PF00117 Glutamine amidotransferase class-I AB57_3533 PF01053 Cys/Met metabolism PLP-dependent enzyme AB57_3534 PF05872 Bacterial protein of unknown function (DUF853) AB57_3535 PF00175 Oxidoreductase NAD-binding domain AB57_3535 PF00970 Oxidoreductase FAD-binding domain AB57_3535 PF00042 Globin AB57_3536 PF02082 Transcriptional regulator AB57_3537 PF01926 50S ribosome-binding GTPase AB57_3539 PF00375 Sodium:dicarboxylate symporter family AB57_3541 PF01553 Acyltransferase AB57_3544 PF00271 Helicase conserved C-terminal domain AB57_3544 PF17191 RecG wedge domain AB57_3544 PF00270 DEAD/DEAH box helicase AB57_3545 PF00156 Phosphoribosyl transferase domain AB57_3546 PF00293 NUDIX domain AB57_3547 PF03641 Possible lysine decarboxylase AB57_3548 PF01544 CorA-like Mg2+ transporter protein AB57_3551 PF05494 MlaC protein AB57_3553 PF02405 Permease MlaE AB57_3554 PF00005 ABC transporter AB57_3556 PF03880 DbpA RNA binding domain AB57_3556 PF00270 DEAD/DEAH box helicase AB57_3556 PF12343 Cold shock protein DEAD box A AB57_3556 PF00271 Helicase conserved C-terminal domain AB57_3557 PF00459 Inositol monophosphatase family AB57_3558 PF02780 Transketolase, C-terminal domain AB57_3558 PF02779 Transketolase, pyrimidine binding domain AB57_3558 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AB57_3559 PF00925 GTP cyclohydrolase II AB57_3560 PF01218 Coproporphyrinogen III oxidase AB57_3561 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AB57_3561 PF01488 Shikimate / quinate 5-dehydrogenase AB57_3561 PF08501 Shikimate dehydrogenase substrate binding domain AB57_3563 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AB57_3563 PF12806 Acetyl-CoA dehydrogenase C-terminal like AB57_3563 PF02770 Acyl-CoA dehydrogenase, middle domain AB57_3563 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AB57_3565 PF04024 PspC domain AB57_3566 PF00571 CBS domain AB57_3570 PF07690 Major Facilitator Superfamily AB57_3571 PF02091 Glycyl-tRNA synthetase alpha subunit AB57_3572 PF05746 DALR anticodon binding domain AB57_3572 PF02092 Glycyl-tRNA synthetase beta subunit AB57_3576 PF00892 EamA-like transporter family AB57_3577 PF03466 LysR substrate binding domain AB57_3577 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_3583 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AB57_3584 PF04996 Succinylarginine dihydrolase AB57_3585 PF00171 Aldehyde dehydrogenase family AB57_3586 PF04958 Arginine N-succinyltransferase beta subunit AB57_3587 PF00202 Aminotransferase class-III AB57_3588 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AB57_3588 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AB57_3590 PF00324 Amino acid permease AB57_3592 PF08241 Methyltransferase domain AB57_3596 PF13614 AAA domain AB57_3597 PF01594 AI-2E family transporter AB57_3598 PF00080 Copper/zinc superoxide dismutase (SODC) AB57_3599 PF12805 FUSC-like inner membrane protein yccS AB57_3600 PF07690 Major Facilitator Superfamily AB57_3603 PF02525 Flavodoxin-like fold AB57_3604 PF03992 Antibiotic biosynthesis monooxygenase AB57_3606 PF01565 FAD binding domain AB57_3606 PF02913 FAD linked oxidases, C-terminal domain AB57_3607 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AB57_3607 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AB57_3608 PF00892 EamA-like transporter family AB57_3609 PF00892 EamA-like transporter family AB57_3611 PF01925 Sulfite exporter TauE/SafE AB57_3612 PF01509 TruB family pseudouridylate synthase (N terminal domain) AB57_3612 PF09157 Pseudouridine synthase II TruB, C-terminal AB57_3612 PF16198 tRNA pseudouridylate synthase B C-terminal domain AB57_3613 PF03280 Proteobacterial lipase chaperone protein AB57_3614 PF00561 alpha/beta hydrolase fold AB57_3615 PF01245 Ribosomal protein L19 AB57_3616 PF01746 tRNA (Guanine-1)-methyltransferase AB57_3617 PF05239 PRC-barrel domain AB57_3617 PF01782 RimM N-terminal domain AB57_3618 PF00886 Ribosomal protein S16 AB57_3626 PF02401 LytB protein AB57_3627 PF00625 Guanylate kinase AB57_3628 PF01192 RNA polymerase Rpb6 AB57_3629 PF02824 TGS domain AB57_3629 PF13291 ACT domain AB57_3629 PF04607 Region found in RelA / SpoT proteins AB57_3630 PF01042 Endoribonuclease L-PSP AB57_3631 PF04324 BFD-like [2Fe-2S] binding domain AB57_3632 PF00210 Ferritin-like domain AB57_3633 PF15864 Protein glycosylation ligase AB57_3633 PF11846 Virulence factor membrane-bound polymerase, C-terminal AB57_3633 PF04932 O-Antigen ligase AB57_3634 PF07963 Prokaryotic N-terminal methylation motif AB57_3634 PF00114 Pilin (bacterial filament) AB57_3636 PF04536 TPM domain AB57_3637 PF04011 LemA family AB57_3639 PF07992 Pyridine nucleotide-disulphide oxidoreductase AB57_3639 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AB57_3640 PF01493 GXGXG motif AB57_3640 PF01645 Conserved region in glutamate synthase AB57_3640 PF04898 Glutamate synthase central domain AB57_3640 PF00310 Glutamine amidotransferases class-II AB57_3642 PF01761 3-dehydroquinate synthase AB57_3643 PF01202 Shikimate kinase AB57_3644 PF11741 AMIN domain AB57_3644 PF03958 Bacterial type II/III secretion system short domain AB57_3644 PF00263 Bacterial type II and III secretion system protein AB57_3644 PF07660 Secretin and TonB N terminus short domain AB57_3649 PF00905 Penicillin binding protein transpeptidase domain AB57_3649 PF00912 Transglycosylase AB57_3649 PF17092 Penicillin-binding protein OB-like domain AB57_3650 PF13847 Methyltransferase domain AB57_3652 PF00953 Glycosyl transferase family 4 AB57_3653 PF02875 Mur ligase family, glutamate ligase domain AB57_3653 PF08245 Mur ligase middle domain AB57_3653 PF01225 Mur ligase family, catalytic domain AB57_3654 PF02875 Mur ligase family, glutamate ligase domain AB57_3654 PF01225 Mur ligase family, catalytic domain AB57_3654 PF08245 Mur ligase middle domain AB57_3655 PF00905 Penicillin binding protein transpeptidase domain AB57_3655 PF03717 Penicillin-binding Protein dimerisation domain AB57_3657 PF01795 MraW methylase family AB57_3660 PF00749 tRNA synthetases class I (E and Q), catalytic domain AB57_3661 PF00324 Amino acid permease AB57_3665 PF01545 Cation efflux family AB57_3666 PF00873 AcrB/AcrD/AcrF family AB57_3667 PF00529 HlyD membrane-fusion protein of T1SS AB57_3667 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AB57_3672 PF12848 ABC transporter AB57_3672 PF00005 ABC transporter AB57_3673 PF01053 Cys/Met metabolism PLP-dependent enzyme AB57_3674 PF00106 short chain dehydrogenase AB57_3675 PF00916 Sulfate permease family AB57_3675 PF01740 STAS domain AB57_3676 PF00575 S1 RNA binding domain AB57_3676 PF17674 HHH domain AB57_3676 PF09371 Tex-like protein N-terminal domain AB57_3676 PF16921 Tex protein YqgF-like domain AB57_3677 PF00072 Response regulator receiver domain AB57_3677 PF00486 Transcriptional regulatory protein, C terminal AB57_3678 PF00512 His Kinase A (phospho-acceptor) domain AB57_3678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3678 PF00672 HAMP domain AB57_3679 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AB57_3679 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AB57_3680 PF00583 Acetyltransferase (GNAT) family AB57_3682 PF00475 Imidazoleglycerol-phosphate dehydratase AB57_3683 PF00117 Glutamine amidotransferase class-I AB57_3687 PF00977 Histidine biosynthesis protein AB57_3692 PF01636 Phosphotransferase enzyme family AB57_3693 PF00977 Histidine biosynthesis protein AB57_3696 PF00230 Major intrinsic protein AB57_3703 PF02705 K+ potassium transporter AB57_3704 PF13302 Acetyltransferase (GNAT) domain AB57_3706 PF02525 Flavodoxin-like fold AB57_3707 PF01638 HxlR-like helix-turn-helix AB57_3710 PF01638 HxlR-like helix-turn-helix AB57_3713 PF12833 Helix-turn-helix domain AB57_3713 PF02311 AraC-like ligand binding domain AB57_3714 PF00248 Aldo/keto reductase family AB57_3717 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_3717 PF03466 LysR substrate binding domain AB57_3719 PF07690 Major Facilitator Superfamily AB57_3723 PF01593 Flavin containing amine oxidoreductase AB57_3724 PF05726 Pirin C-terminal cupin domain AB57_3724 PF02678 Pirin AB57_3725 PF00857 Isochorismatase family AB57_3726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_3727 PF00171 Aldehyde dehydrogenase family AB57_3728 PF00202 Aminotransferase class-III AB57_3729 PF00392 Bacterial regulatory proteins, gntR family AB57_3729 PF00155 Aminotransferase class I and II AB57_3730 PF00324 Amino acid permease AB57_3732 PF03591 AzlC protein AB57_3734 PF00436 Single-strand binding protein family AB57_3735 PF07690 Major Facilitator Superfamily AB57_3737 PF02581 Thiamine monophosphate synthase AB57_3737 PF03070 TENA/THI-4/PQQC family AB57_3737 PF08543 Phosphomethylpyrimidine kinase AB57_3738 PF06942 GlpM protein AB57_3740 PF00107 Zinc-binding dehydrogenase AB57_3740 PF08240 Alcohol dehydrogenase GroES-like domain AB57_3741 PF16925 Tetracyclin repressor-like, C-terminal domain AB57_3741 PF00440 Bacterial regulatory proteins, tetR family AB57_3742 PF00005 ABC transporter AB57_3742 PF17760 UvrA interaction domain AB57_3742 PF17755 UvrA DNA-binding domain AB57_3743 PF00990 Diguanylate cyclase, GGDEF domain AB57_3743 PF17158 Membrane-associated sensor, integral membrane domain AB57_3745 PF02028 BCCT, betaine/carnitine/choline family transporter AB57_3747 PF00474 Sodium:solute symporter family AB57_3748 PF04341 Protein of unknown function, DUF485 AB57_3749 PF00072 Response regulator receiver domain AB57_3749 PF01627 Hpt domain AB57_3749 PF00512 His Kinase A (phospho-acceptor) domain AB57_3749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3749 PF00672 HAMP domain AB57_3751 PF00196 Bacterial regulatory proteins, luxR family AB57_3751 PF00072 Response regulator receiver domain AB57_3752 PF03358 NADPH-dependent FMN reductase AB57_3753 PF00296 Luciferase-like monooxygenase AB57_3754 PF01037 Lrp/AsnC ligand binding domain AB57_3755 PF00857 Isochorismatase family AB57_3756 PF16177 Acetyl-coenzyme A synthetase N-terminus AB57_3756 PF00501 AMP-binding enzyme AB57_3756 PF13193 AMP-binding enzyme C-terminal domain AB57_3759 PF04452 RNA methyltransferase AB57_3760 PF00924 Mechanosensitive ion channel AB57_3761 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AB57_3762 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AB57_3765 PF03462 PCRF domain AB57_3765 PF00472 RF-1 domain AB57_3767 PF17768 RecJ OB domain AB57_3767 PF02272 DHHA1 domain AB57_3767 PF01368 DHH family AB57_3768 PF01243 Pyridoxamine 5'-phosphate oxidase AB57_3768 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AB57_3769 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AB57_3769 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AB57_3769 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AB57_3769 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AB57_3770 PF00478 IMP dehydrogenase / GMP reductase domain AB57_3770 PF00571 CBS domain AB57_3771 PF03692 Putative zinc- or iron-chelating domain AB57_3772 PF01613 Flavin reductase like domain AB57_3772 PF00258 Flavodoxin AB57_3773 PF00593 TonB dependent receptor AB57_3773 PF07715 TonB-dependent Receptor Plug Domain AB57_3774 PF01169 Uncharacterized protein family UPF0016 AB57_3776 PF02817 e3 binding domain AB57_3776 PF00364 Biotin-requiring enzyme AB57_3776 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AB57_3777 PF17831 Pyruvate dehydrogenase E1 component middle domain AB57_3777 PF00456 Transketolase, thiamine diphosphate binding domain AB57_3778 PF01551 Peptidase family M23 AB57_3782 PF12327 FtsZ family, C-terminal domain AB57_3782 PF00091 Tubulin/FtsZ family, GTPase domain AB57_3783 PF02491 SHS2 domain inserted in FTSA AB57_3784 PF08478 POTRA domain, FtsQ-type AB57_3784 PF03799 Cell division protein FtsQ AB57_3785 PF07478 D-ala D-ala ligase C-terminus AB57_3785 PF01820 D-ala D-ala ligase N-terminus AB57_3786 PF02875 Mur ligase family, glutamate ligase domain AB57_3786 PF08245 Mur ligase middle domain AB57_3786 PF01225 Mur ligase family, catalytic domain AB57_3787 PF03033 Glycosyltransferase family 28 N-terminal domain AB57_3787 PF04101 Glycosyltransferase family 28 C-terminal domain AB57_3788 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AB57_3788 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AB57_3790 PF00593 TonB dependent receptor AB57_3790 PF07715 TonB-dependent Receptor Plug Domain AB57_3791 PF00156 Phosphoribosyl transferase domain AB57_3792 PF03372 Endonuclease/Exonuclease/phosphatase family AB57_3793 PF03960 ArsC family AB57_3795 PF07859 alpha/beta hydrolase fold AB57_3796 PF02683 Cytochrome C biogenesis protein transmembrane region AB57_3796 PF11412 Disulphide bond corrector protein DsbC AB57_3797 PF00990 Diguanylate cyclase, GGDEF domain AB57_3797 PF07694 5TMR of 5TMR-LYT AB57_3803 PF00576 HIUase/Transthyretin family AB57_3804 PF00860 Permease family AB57_3806 PF01494 FAD binding domain AB57_3807 PF03561 Allantoicase repeat AB57_3808 PF04115 Ureidoglycolate lyase AB57_3809 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3809 PF01751 Toprim domain AB57_3809 PF00986 DNA gyrase B subunit, carboxyl terminus AB57_3809 PF00204 DNA gyrase B AB57_3810 PF05728 Uncharacterised protein family (UPF0227) AB57_3817 PF04717 Type VI secretion system, phage-baseplate injector AB57_3818 PF02600 Disulfide bond formation protein DsbB AB57_3819 PF04262 Glutamate-cysteine ligase AB57_3822 PF04286 Protein of unknown function (DUF445) AB57_3823 PF00155 Aminotransferase class I and II AB57_3824 PF01554 MatE AB57_3825 PF00106 short chain dehydrogenase AB57_3827 PF00486 Transcriptional regulatory protein, C terminal AB57_3827 PF00072 Response regulator receiver domain AB57_3828 PF00512 His Kinase A (phospho-acceptor) domain AB57_3828 PF00989 PAS fold AB57_3828 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AB57_3828 PF11808 Phosphate regulon sensor protein PhoR AB57_3830 PF02666 Phosphatidylserine decarboxylase AB57_3831 PF00581 Rhodanese-like domain AB57_3832 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AB57_3832 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AB57_3833 PF02580 D-Tyr-tRNA(Tyr) deacylase AB57_3838 PF00925 GTP cyclohydrolase II AB57_3838 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AB57_3839 PF00885 6,7-dimethyl-8-ribityllumazine synthase AB57_3840 PF01029 NusB family AB57_3841 PF00586 AIR synthase related protein, N-terminal domain AB57_3841 PF02769 AIR synthase related protein, C-terminal domain AB57_3844 PF00132 Bacterial transferase hexapeptide (six repeats) AB57_3844 PF12804 MobA-like NTP transferase domain AB57_3844 PF14602 Hexapeptide repeat of succinyl-transferase AB57_3845 PF01380 SIS domain AB57_3851 PF00145 C-5 cytosine-specific DNA methylase AB57_3853 PF01177 Asp/Glu/Hydantoin racemase AB57_3856 PF00491 Arginase family AB57_3857 PF01979 Amidohydrolase family AB57_3858 PF00324 Amino acid permease AB57_3859 PF00221 Aromatic amino acid lyase AB57_3860 PF01175 Urocanase Rossmann-like domain AB57_3860 PF17392 Urocanase C-terminal domain AB57_3860 PF17391 Urocanase N-terminal domain AB57_3861 PF05962 HutD AB57_3862 PF07702 UTRA domain AB57_3862 PF00392 Bacterial regulatory proteins, gntR family AB57_3864 PF02492 CobW/HypB/UreG, nucleotide-binding domain AB57_3864 PF07683 Cobalamin synthesis protein cobW C-terminal domain AB57_3866 PF00324 Amino acid permease AB57_3868 PF02798 Glutathione S-transferase, N-terminal domain AB57_3868 PF14497 Glutathione S-transferase, C-terminal domain AB57_3869 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AB57_3871 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AB57_3872 PF04463 Protein of unknown function (DUF523) AB57_3873 PF01554 MatE AB57_3874 PF01758 Sodium Bile acid symporter family AB57_3875 PF00857 Isochorismatase family AB57_3876 PF00701 Dihydrodipicolinate synthetase family AB57_3878 PF01259 SAICAR synthetase AB57_3880 PF01226 Formate/nitrite transporter AB57_3881 PF16193 AAA C-terminal domain AB57_3881 PF12002 MgsA AAA+ ATPase C terminal AB57_3881 PF00004 ATPase family associated with various cellular activities (AAA) AB57_3882 PF07995 Glucose / Sorbosone dehydrogenase AB57_3883 PF03692 Putative zinc- or iron-chelating domain AB57_3884 PF07043 Protein of unknown function (DUF1328) AB57_3887 PF10576 Iron-sulfur binding domain of endonuclease III AB57_3887 PF00633 Helix-hairpin-helix motif AB57_3887 PF00730 HhH-GPD superfamily base excision DNA repair protein AB57_3887 PF14815 NUDIX domain AB57_3890 PF03352 Methyladenine glycosylase AB57_3891 PF08240 Alcohol dehydrogenase GroES-like domain AB57_3891 PF00107 Zinc-binding dehydrogenase AB57_3892 PF00155 Aminotransferase class I and II AB57_3892 PF00392 Bacterial regulatory proteins, gntR family AB57_3894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_3894 PF03466 LysR substrate binding domain AB57_3896 PF00248 Aldo/keto reductase family AB57_3897 PF07690 Major Facilitator Superfamily AB57_3899 PF01113 Dihydrodipicolinate reductase, N-terminus AB57_3899 PF05173 Dihydrodipicolinate reductase, C-terminus AB57_3901 PF00226 DnaJ domain AB57_3901 PF00684 DnaJ central domain AB57_3901 PF01556 DnaJ C terminal domain AB57_3903 PF00873 AcrB/AcrD/AcrF family AB57_3904 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AB57_3905 PF00440 Bacterial regulatory proteins, tetR family AB57_3905 PF08361 MAATS-type transcriptional repressor, C-terminal region AB57_3906 PF00311 Phosphoenolpyruvate carboxylase AB57_3907 PF00860 Permease family AB57_3908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AB57_3908 PF03466 LysR substrate binding domain AB57_3911 PF00920 Dehydratase family AB57_3912 PF02911 Formyl transferase, C-terminal domain AB57_3912 PF00551 Formyl transferase AB57_3913 PF01189 16S rRNA methyltransferase RsmB/F AB57_3913 PF01029 NusB family AB57_3915 PF00209 Sodium:neurotransmitter symporter family AB57_3926 PF07715 TonB-dependent Receptor Plug Domain AB57_3926 PF00593 TonB dependent receptor AB57_4883 PF13335 Magnesium chelatase, subunit ChlI C-terminal AB57_4883 PF01078 Magnesium chelatase, subunit ChlI