locus-tag class description IX87_00195 PF00772 DnaB-like helicase N terminal domain IX87_00195 PF03796 DnaB-like helicase C terminal domain IX87_00320 PF01812 5-formyltetrahydrofolate cyclo-ligase family IX87_00330 PF05662 Coiled stalk of trimeric autotransporter adhesin IX87_00330 PF05658 Head domain of trimeric autotransporter adhesin IX87_00330 PF03895 YadA-like membrane anchor domain IX87_00330 PF13018 Extended Signal Peptide of Type V secretion system IX87_00345 PF02190 ATP-dependent protease La (LON) substrate-binding domain IX87_00345 PF05362 Lon protease (S16) C-terminal proteolytic domain IX87_00345 PF00004 ATPase family associated with various cellular activities (AAA) IX87_00350 PF02590 Predicted SPOUT methyltransferase IX87_00355 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IX87_00365 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX87_00365 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IX87_00370 PF04060 Putative Fe-S cluster IX87_00375 PF00730 HhH-GPD superfamily base excision DNA repair protein IX87_00375 PF10576 Iron-sulfur binding domain of endonuclease III IX87_00375 PF00633 Helix-hairpin-helix motif IX87_00385 PF05191 Adenylate kinase, active site lid IX87_00400 PF00905 Penicillin binding protein transpeptidase domain IX87_00400 PF03717 Penicillin-binding Protein dimerisation domain IX87_00415 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX87_00420 PF01730 UreF IX87_00425 PF05194 UreE urease accessory protein, C-terminal domain IX87_00425 PF02814 UreE urease accessory protein, N-terminal domain IX87_00430 PF01979 Amidohydrolase family IX87_00430 PF00449 Urease alpha-subunit, N-terminal domain IX87_00440 PF00699 Urease beta subunit IX87_00445 PF00547 Urease, gamma subunit IX87_00450 PF01774 UreD urease accessory protein IX87_00470 PF00463 Isocitrate lyase family IX87_00475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_00475 PF03466 LysR substrate binding domain IX87_00480 PF00571 CBS domain IX87_00480 PF01595 Cyclin M transmembrane N-terminal domain IX87_00480 PF03471 Transporter associated domain IX87_00495 PF03600 Citrate transporter IX87_00510 PF00009 Elongation factor Tu GTP binding domain IX87_00515 PF01507 Phosphoadenosine phosphosulfate reductase family IX87_00525 PF14052 Capsule assembly protein Wzi IX87_00530 PF00152 tRNA synthetases class II (D, K and N) IX87_00530 PF01336 OB-fold nucleic acid binding domain IX87_00555 PF00301 Rubredoxin IX87_00560 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_00560 PF18113 Rubredoxin binding C-terminal domain IX87_00565 PF00561 alpha/beta hydrolase fold IX87_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_00570 PF03466 LysR substrate binding domain IX87_00580 PF13089 Polyphosphate kinase N-terminal domain IX87_00580 PF17941 Polyphosphate kinase C-terminal domain 1 IX87_00580 PF13090 Polyphosphate kinase C-terminal domain 2 IX87_00580 PF02503 Polyphosphate kinase middle domain IX87_00585 PF00912 Transglycosylase IX87_00590 PF01694 Rhomboid family IX87_00600 PF00005 ABC transporter IX87_00605 PF13472 GDSL-like Lipase/Acylhydrolase family IX87_00610 PF00484 Carbonic anhydrase IX87_00615 PF00561 alpha/beta hydrolase fold IX87_00625 PF07715 TonB-dependent Receptor Plug Domain IX87_00625 PF00593 TonB dependent receptor IX87_00630 PF01106 NifU-like domain IX87_00630 PF01521 Iron-sulphur cluster biosynthesis IX87_00640 PF00884 Sulfatase IX87_00645 PF03781 Sulfatase-modifying factor enzyme 1 IX87_00660 PF00291 Pyridoxal-phosphate dependent enzyme IX87_00665 PF01384 Phosphate transporter family IX87_00675 PF02574 Homocysteine S-methyltransferase IX87_00675 PF00809 Pterin binding enzyme IX87_00675 PF02310 B12 binding domain IX87_00675 PF02965 Vitamin B12 dependent methionine synthase, activation domain IX87_00675 PF02607 B12 binding domain IX87_00680 PF02779 Transketolase, pyrimidine binding domain IX87_00680 PF02780 Transketolase, C-terminal domain IX87_00685 PF00456 Transketolase, thiamine diphosphate binding domain IX87_00690 PF07690 Major Facilitator Superfamily IX87_00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_00700 PF03466 LysR substrate binding domain IX87_00710 PF01263 Aldose 1-epimerase IX87_00715 PF07690 Major Facilitator Superfamily IX87_00720 PF12833 Helix-turn-helix domain IX87_00720 PF02311 AraC-like ligand binding domain IX87_00725 PF04960 Glutaminase IX87_00730 PF01327 Polypeptide deformylase IX87_00735 PF07690 Major Facilitator Superfamily IX87_00745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX87_00745 PF00205 Thiamine pyrophosphate enzyme, central domain IX87_00745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX87_00750 PF00171 Aldehyde dehydrogenase family IX87_00755 PF01958 Domain of unknown function DUF108 IX87_00755 PF03447 Homoserine dehydrogenase, NAD binding domain IX87_00765 PF12697 Alpha/beta hydrolase family IX87_00775 PF07690 Major Facilitator Superfamily IX87_00780 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_00780 PF14759 Reductase C-terminal IX87_00785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX87_00795 PF00355 Rieske [2Fe-2S] domain IX87_00805 PF00355 Rieske [2Fe-2S] domain IX87_00810 PF01614 Bacterial transcriptional regulator IX87_00810 PF09339 IclR helix-turn-helix domain IX87_00825 PF00378 Enoyl-CoA hydratase/isomerase IX87_00835 PF00535 Glycosyl transferase family 2 IX87_00840 PF14883 Hypothetical glycosyl hydrolase family 13 IX87_00840 PF01522 Polysaccharide deacetylase IX87_00845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX87_00850 PF07152 YaeQ protein IX87_00855 PF00375 Sodium:dicarboxylate symporter family IX87_00860 PF07683 Cobalamin synthesis protein cobW C-terminal domain IX87_00860 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX87_00870 PF03061 Thioesterase superfamily IX87_00880 PF02028 BCCT, betaine/carnitine/choline family transporter IX87_00885 PF02028 BCCT, betaine/carnitine/choline family transporter IX87_00890 PF00440 Bacterial regulatory proteins, tetR family IX87_00890 PF13977 BetI-type transcriptional repressor, C-terminal IX87_00895 PF00171 Aldehyde dehydrogenase family IX87_00900 PF05199 GMC oxidoreductase IX87_00900 PF00732 GMC oxidoreductase IX87_00905 PF06039 Malate:quinone oxidoreductase (Mqo) IX87_00925 PF02574 Homocysteine S-methyltransferase IX87_00930 PF13520 Amino acid permease IX87_00955 PF01126 Heme oxygenase IX87_00975 PF00593 TonB dependent receptor IX87_00975 PF07715 TonB-dependent Receptor Plug Domain IX87_00985 PF04542 Sigma-70 region 2 IX87_00985 PF08281 Sigma-70, region 4 IX87_00995 PF00701 Dihydrodipicolinate synthetase family IX87_01000 PF00083 Sugar (and other) transporter IX87_01010 PF04851 Type III restriction enzyme, res subunit IX87_01010 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IX87_01010 PF08463 EcoEI R protein C-terminal IX87_01010 PF00271 Helicase conserved C-terminal domain IX87_01020 PF02384 N-6 DNA Methylase IX87_01020 PF12161 HsdM N-terminal domain IX87_01105 PF00717 Peptidase S24-like IX87_01110 PF00817 impB/mucB/samB family IX87_01110 PF13438 Domain of unknown function (DUF4113) IX87_01110 PF11799 impB/mucB/samB family C-terminal domain IX87_01110 PF11798 IMS family HHH motif IX87_01185 PF02768 DNA polymerase III beta subunit, C-terminal domain IX87_01185 PF02767 DNA polymerase III beta subunit, central domain IX87_01185 PF00712 DNA polymerase III beta subunit, N-terminal domain IX87_01225 PF05016 ParE toxin of type II toxin-antitoxin system, parDE IX87_01440 PF01695 IstB-like ATP binding protein IX87_01450 PF00145 C-5 cytosine-specific DNA methylase IX87_01540 PF00929 Exonuclease IX87_01605 PF07690 Major Facilitator Superfamily IX87_01610 PF13533 Biotin-lipoyl like IX87_01615 PF03061 Thioesterase superfamily IX87_01620 PF00490 Delta-aminolevulinic acid dehydratase IX87_01625 PF01266 FAD dependent oxidoreductase IX87_01630 PF08338 Domain of unknown function (DUF1731) IX87_01630 PF01370 NAD dependent epimerase/dehydratase family IX87_01650 PF12320 Type 5 capsule protein repressor C-terminal domain IX87_01650 PF00149 Calcineurin-like phosphoesterase IX87_01665 PF01168 Alanine racemase, N-terminal domain IX87_01670 PF00437 Type II/IV secretion system protein IX87_01675 PF00437 Type II/IV secretion system protein IX87_01680 PF01475 Ferric uptake regulator family IX87_01685 PF04355 SmpA / OmlA family IX87_01690 PF03658 RnfH family Ubiquitin IX87_01700 PF01814 Hemerythrin HHE cation binding domain IX87_01705 PF13230 Glutamine amidotransferases class-II IX87_01715 PF00696 Amino acid kinase family IX87_01720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX87_01720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX87_01720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX87_01720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX87_01725 PF00692 dUTPase IX87_01730 PF13361 UvrD-like helicase C-terminal domain IX87_01730 PF00580 UvrD/REP helicase N-terminal domain IX87_01735 PF13488 Glycine zipper IX87_01735 PF00691 OmpA family IX87_01740 PF01553 Acyltransferase IX87_01750 PF03775 Septum formation inhibitor MinC, C-terminal domain IX87_01755 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IX87_01760 PF03776 Septum formation topological specificity factor MinE IX87_01770 PF01810 LysE type translocator IX87_01775 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IX87_01775 PF09397 Ftsk gamma domain IX87_01775 PF01580 FtsK/SpoIIIE family IX87_01775 PF17854 FtsK alpha domain IX87_01780 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_01785 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IX87_01790 PF04376 Arginine-tRNA-protein transferase, N terminus IX87_01790 PF04377 Arginine-tRNA-protein transferase, C terminus IX87_01795 PF00583 Acetyltransferase (GNAT) family IX87_01825 PF00009 Elongation factor Tu GTP binding domain IX87_01825 PF03144 Elongation factor Tu domain 2 IX87_01825 PF03143 Elongation factor Tu C-terminal domain IX87_01830 PF03764 Elongation factor G, domain IV IX87_01830 PF14492 Elongation Factor G, domain II IX87_01830 PF00679 Elongation factor G C-terminus IX87_01830 PF00009 Elongation factor Tu GTP binding domain IX87_01830 PF03144 Elongation factor Tu domain 2 IX87_01835 PF00177 Ribosomal protein S7p/S5e IX87_01840 PF00164 Ribosomal protein S12/S23 IX87_01850 PF00109 Beta-ketoacyl synthase, N-terminal domain IX87_01850 PF02801 Beta-ketoacyl synthase, C-terminal domain IX87_01860 PF02678 Pirin IX87_01860 PF05726 Pirin C-terminal cupin domain IX87_01870 PF00795 Carbon-nitrogen hydrolase IX87_01870 PF02540 NAD synthase IX87_01885 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_01885 PF00970 Oxidoreductase FAD-binding domain IX87_01885 PF00175 Oxidoreductase NAD-binding domain IX87_01890 PF00171 Aldehyde dehydrogenase family IX87_01895 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX87_01895 PF00355 Rieske [2Fe-2S] domain IX87_01900 PF07859 alpha/beta hydrolase fold IX87_01905 PF02028 BCCT, betaine/carnitine/choline family transporter IX87_01910 PF00180 Isocitrate/isopropylmalate dehydrogenase IX87_01915 PF03466 LysR substrate binding domain IX87_01915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_01930 PF00037 4Fe-4S binding domain IX87_01935 PF01467 Cytidylyltransferase-like IX87_01940 PF00589 Phage integrase family IX87_01940 PF13356 Arm DNA-binding domain IX87_01995 PF01464 Transglycosylase SLT domain IX87_01995 PF10145 Phage-related minor tail protein IX87_01995 PF01551 Peptidase family M23 IX87_02145 PF03796 DnaB-like helicase C terminal domain IX87_02145 PF00772 DnaB-like helicase N terminal domain IX87_02165 PF01726 LexA DNA binding domain IX87_02165 PF00717 Peptidase S24-like IX87_02210 PF02899 Phage integrase, N-terminal SAM-like domain IX87_02210 PF00589 Phage integrase family IX87_02215 PF03969 AFG1-like ATPase IX87_02245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IX87_02255 PF00216 Bacterial DNA-binding protein IX87_02260 PF00575 S1 RNA binding domain IX87_02265 PF02224 Cytidylate kinase IX87_02275 PF14437 MafB19-like deaminase IX87_02285 PF03167 Uracil DNA glycosylase superfamily IX87_02295 PF03934 Type II secretion system (T2SS), protein K IX87_02300 PF07963 Prokaryotic N-terminal methylation motif IX87_02300 PF11612 Type II secretion system (T2SS), protein J IX87_02305 PF02501 Type II secretion system (T2SS), protein I IX87_02305 PF07963 Prokaryotic N-terminal methylation motif IX87_02320 PF01026 TatD related DNase IX87_02330 PF09115 DNA polymerase III, delta subunit, C terminal IX87_02335 PF02348 Cytidylyltransferase IX87_02340 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IX87_02345 PF00664 ABC transporter transmembrane region IX87_02345 PF00005 ABC transporter IX87_02355 PF01618 MotA/TolQ/ExbB proton channel family IX87_02360 PF02195 ParB-like nuclease domain IX87_02360 PF17762 HTH domain found in ParB protein IX87_02365 PF13614 AAA domain IX87_02370 PF02527 rRNA small subunit methyltransferase G IX87_02375 PF00483 Nucleotidyl transferase IX87_02380 PF01636 Phosphotransferase enzyme family IX87_02385 PF04453 LPS transport system D IX87_02385 PF03968 OstA-like protein IX87_02390 PF09312 SurA N-terminal domain IX87_02390 PF00639 PPIC-type PPIASE domain IX87_02395 PF01116 Fructose-bisphosphate aldolase class-II IX87_02405 PF00162 Phosphoglycerate kinase IX87_02415 PF02545 Maf-like protein IX87_02420 PF08007 Cupin superfamily protein IX87_02435 PF00375 Sodium:dicarboxylate symporter family IX87_02440 PF06912 Protein of unknown function (DUF1275) IX87_02445 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IX87_02460 PF00005 ABC transporter IX87_02460 PF00664 ABC transporter transmembrane region IX87_02470 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX87_02470 PF12833 Helix-turn-helix domain IX87_02475 PF01597 Glycine cleavage H-protein IX87_02480 PF02146 Sir2 family IX87_02485 PF00474 Sodium:solute symporter family IX87_02490 PF01037 Lrp/AsnC ligand binding domain IX87_02495 PF00171 Aldehyde dehydrogenase family IX87_02495 PF01619 Proline dehydrogenase IX87_02495 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IX87_02495 PF14850 DNA-binding domain of Proline dehydrogenase IX87_02500 PF04229 GrpB protein IX87_02505 PF05958 tRNA (Uracil-5-)-methyltransferase IX87_02515 PF09992 Phosphodiester glycosidase IX87_02525 PF04264 YceI-like domain IX87_02535 PF02780 Transketolase, C-terminal domain IX87_02535 PF02779 Transketolase, pyrimidine binding domain IX87_02535 PF00456 Transketolase, thiamine diphosphate binding domain IX87_02540 PF02773 S-adenosylmethionine synthetase, C-terminal domain IX87_02540 PF02772 S-adenosylmethionine synthetase, central domain IX87_02540 PF00438 S-adenosylmethionine synthetase, N-terminal domain IX87_02560 PF00905 Penicillin binding protein transpeptidase domain IX87_02580 PF02075 Crossover junction endodeoxyribonuclease RuvC IX87_02585 PF01256 Carbohydrate kinase IX87_02585 PF03853 YjeF-related protein N-terminus IX87_02590 PF08331 Domain of unknown function (DUF1730) IX87_02595 PF04055 Radical SAM superfamily IX87_02595 PF06968 Biotin and Thiamin Synthesis associated domain IX87_02610 PF16970 Type-1 fimbrial protein, A IX87_02625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IX87_02625 PF02753 Pili assembly chaperone PapD, C-terminal domain IX87_02630 PF13953 PapC C-terminal domain IX87_02630 PF00577 Outer membrane usher protein IX87_02630 PF13954 PapC N-terminal domain IX87_02650 PF00892 EamA-like transporter family IX87_02660 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX87_02670 PF03466 LysR substrate binding domain IX87_02670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_02720 PF00440 Bacterial regulatory proteins, tetR family IX87_02730 PF01709 Transcriptional regulator IX87_02735 PF01037 Lrp/AsnC ligand binding domain IX87_02745 PF00005 ABC transporter IX87_02750 PF00528 Binding-protein-dependent transport system inner membrane component IX87_02755 PF00528 Binding-protein-dependent transport system inner membrane component IX87_02780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_02780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX87_02790 PF00296 Luciferase-like monooxygenase IX87_02795 PF03180 NLPA lipoprotein IX87_02800 PF03180 NLPA lipoprotein IX87_02805 PF09383 NIL domain IX87_02805 PF00005 ABC transporter IX87_02810 PF00528 Binding-protein-dependent transport system inner membrane component IX87_02815 PF01926 50S ribosome-binding GTPase IX87_02815 PF06071 Protein of unknown function (DUF933) IX87_02840 PF03591 AzlC protein IX87_02845 PF05437 Branched-chain amino acid transport protein (AzlD) IX87_02855 PF02222 ATP-grasp domain IX87_02860 PF08335 GlnD PII-uridylyltransferase IX87_02860 PF01966 HD domain IX87_02860 PF01909 Nucleotidyltransferase domain IX87_02865 PF00155 Aminotransferase class I and II IX87_02875 PF12852 Cupin IX87_02875 PF12833 Helix-turn-helix domain IX87_02880 PF00255 Glutathione peroxidase IX87_02885 PF01641 SelR domain IX87_02890 PF00155 Aminotransferase class I and II IX87_02895 PF00375 Sodium:dicarboxylate symporter family IX87_02900 PF00710 Asparaginase, N-terminal IX87_02900 PF17763 Glutaminase/Asparaginase C-terminal domain IX87_02905 PF02811 PHP domain IX87_02905 PF07733 Bacterial DNA polymerase III alpha NTPase domain IX87_02905 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IX87_02905 PF14579 Helix-hairpin-helix motif IX87_02905 PF01336 OB-fold nucleic acid binding domain IX87_02910 PF00588 SpoU rRNA Methylase family IX87_02915 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_02930 PF13192 Thioredoxin domain IX87_02930 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_02945 PF03466 LysR substrate binding domain IX87_02945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_02950 PF01758 Sodium Bile acid symporter family IX87_02955 PF01022 Bacterial regulatory protein, arsR family IX87_02960 PF03960 ArsC family IX87_02970 PF01979 Amidohydrolase family IX87_02970 PF13382 Adenine deaminase C-terminal domain IX87_02985 PF03466 LysR substrate binding domain IX87_02985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_02995 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX87_03000 PF01177 Asp/Glu/Hydantoin racemase IX87_03005 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IX87_03010 PF00528 Binding-protein-dependent transport system inner membrane component IX87_03020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IX87_03040 PF00083 Sugar (and other) transporter IX87_03045 PF00296 Luciferase-like monooxygenase IX87_03060 PF01654 Cytochrome bd terminal oxidase subunit I IX87_03065 PF02322 Cytochrome bd terminal oxidase subunit II IX87_03075 PF00392 Bacterial regulatory proteins, gntR family IX87_03075 PF00155 Aminotransferase class I and II IX87_03080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03080 PF03466 LysR substrate binding domain IX87_03095 PF00698 Acyl transferase domain IX87_03100 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG IX87_03110 PF01039 Carboxyl transferase domain IX87_03115 PF06857 Malonate decarboxylase delta subunit (MdcD) IX87_03120 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IX87_03125 PF16957 Malonate decarboxylase, alpha subunit, transporter IX87_03130 PF03466 LysR substrate binding domain IX87_03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03140 PF07690 Major Facilitator Superfamily IX87_03155 PF00392 Bacterial regulatory proteins, gntR family IX87_03155 PF00155 Aminotransferase class I and II IX87_03160 PF04172 LrgB-like family IX87_03165 PF03788 LrgA family IX87_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03170 PF03466 LysR substrate binding domain IX87_03175 PF14834 Glutathione S-transferase, C-terminal domain IX87_03175 PF02798 Glutathione S-transferase, N-terminal domain IX87_03180 PF02798 Glutathione S-transferase, N-terminal domain IX87_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03185 PF03466 LysR substrate binding domain IX87_03215 PF00581 Rhodanese-like domain IX87_03220 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_03230 PF00266 Aminotransferase class-V IX87_03235 PF01810 LysE type translocator IX87_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03240 PF03466 LysR substrate binding domain IX87_03245 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX87_03250 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX87_03255 PF00005 ABC transporter IX87_03260 PF00528 Binding-protein-dependent transport system inner membrane component IX87_03265 PF00528 Binding-protein-dependent transport system inner membrane component IX87_03275 PF00072 Response regulator receiver domain IX87_03280 PF00072 Response regulator receiver domain IX87_03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_03280 PF00512 His Kinase A (phospho-acceptor) domain IX87_03280 PF09308 LuxQ, periplasmic IX87_03290 PF01037 Lrp/AsnC ligand binding domain IX87_03290 PF13404 AsnC-type helix-turn-helix domain IX87_03300 PF00717 Peptidase S24-like IX87_03325 PF18011 C-terminal domain found in long catalases IX87_03325 PF06628 Catalase-related immune-responsive IX87_03325 PF00199 Catalase IX87_03335 PF18146 Damage-inducible protein CinA KH domain IX87_03335 PF00994 Probable molybdopterin binding domain IX87_03335 PF02464 Competence-damaged protein IX87_03380 PF03466 LysR substrate binding domain IX87_03380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03400 PF00501 AMP-binding enzyme IX87_03400 PF13193 AMP-binding enzyme C-terminal domain IX87_03405 PF00440 Bacterial regulatory proteins, tetR family IX87_03410 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_03410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_03410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_03415 PF01039 Carboxyl transferase domain IX87_03420 PF00378 Enoyl-CoA hydratase/isomerase IX87_03425 PF02785 Biotin carboxylase C-terminal domain IX87_03425 PF00364 Biotin-requiring enzyme IX87_03425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX87_03425 PF00289 Biotin carboxylase, N-terminal domain IX87_03430 PF00682 HMGL-like IX87_03435 PF03466 LysR substrate binding domain IX87_03435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03450 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_03450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_03450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_03450 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX87_03460 PF07690 Major Facilitator Superfamily IX87_03470 PF01144 Coenzyme A transferase IX87_03475 PF01144 Coenzyme A transferase IX87_03480 PF07690 Major Facilitator Superfamily IX87_03485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_03485 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_03485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_03490 PF00378 Enoyl-CoA hydratase/isomerase IX87_03500 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX87_03500 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX87_03500 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IX87_03505 PF02803 Thiolase, C-terminal domain IX87_03505 PF00108 Thiolase, N-terminal domain IX87_03510 PF09339 IclR helix-turn-helix domain IX87_03520 PF01810 LysE type translocator IX87_03525 PF02543 Carbamoyltransferase N-terminus IX87_03525 PF16861 Carbamoyltransferase C-terminus IX87_03535 PF03060 Nitronate monooxygenase IX87_03540 PF00378 Enoyl-CoA hydratase/isomerase IX87_03545 PF09339 IclR helix-turn-helix domain IX87_03550 PF02515 CoA-transferase family III IX87_03555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_03555 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_03555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_03560 PF07690 Major Facilitator Superfamily IX87_03565 PF13419 Haloacid dehalogenase-like hydrolase IX87_03570 PF00266 Aminotransferase class-V IX87_03575 PF01266 FAD dependent oxidoreductase IX87_03580 PF00528 Binding-protein-dependent transport system inner membrane component IX87_03585 PF08402 TOBE domain IX87_03585 PF00005 ABC transporter IX87_03595 PF00392 Bacterial regulatory proteins, gntR family IX87_03595 PF07702 UTRA domain IX87_03600 PF01494 FAD binding domain IX87_03605 PF01614 Bacterial transcriptional regulator IX87_03605 PF09339 IclR helix-turn-helix domain IX87_03610 PF02525 Flavodoxin-like fold IX87_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03615 PF03466 LysR substrate binding domain IX87_03620 PF02627 Carboxymuconolactone decarboxylase family IX87_03625 PF00171 Aldehyde dehydrogenase family IX87_03635 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX87_03645 PF00171 Aldehyde dehydrogenase family IX87_03650 PF00296 Luciferase-like monooxygenase IX87_03655 PF01613 Flavin reductase like domain IX87_03660 PF12697 Alpha/beta hydrolase family IX87_03680 PF01292 Prokaryotic cytochrome b561 IX87_03685 PF00199 Catalase IX87_03710 PF03061 Thioesterase superfamily IX87_03715 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_03720 PF07848 PaaX-like protein IX87_03720 PF08223 PaaX-like protein C-terminal domain IX87_03725 PF14535 AMP-binding enzyme C-terminal domain IX87_03725 PF00501 AMP-binding enzyme IX87_03730 PF00108 Thiolase, N-terminal domain IX87_03730 PF02803 Thiolase, C-terminal domain IX87_03735 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IX87_03735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX87_03735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX87_03740 PF00378 Enoyl-CoA hydratase/isomerase IX87_03745 PF00378 Enoyl-CoA hydratase/isomerase IX87_03750 PF00175 Oxidoreductase NAD-binding domain IX87_03750 PF00970 Oxidoreductase FAD-binding domain IX87_03750 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_03755 PF01883 Iron-sulfur cluster assembly protein IX87_03760 PF05138 Phenylacetic acid catabolic protein IX87_03765 PF06243 Phenylacetic acid degradation B IX87_03770 PF05138 Phenylacetic acid catabolic protein IX87_03775 PF01575 MaoC like domain IX87_03775 PF00171 Aldehyde dehydrogenase family IX87_03780 PF03313 Serine dehydratase alpha chain IX87_03780 PF03315 Serine dehydratase beta chain IX87_03785 PF13520 Amino acid permease IX87_03790 PF00171 Aldehyde dehydrogenase family IX87_03795 PF00083 Sugar (and other) transporter IX87_03805 PF04324 BFD-like [2Fe-2S] binding domain IX87_03805 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_03815 PF01266 FAD dependent oxidoreductase IX87_03820 PF05544 Proline racemase IX87_03825 PF00392 Bacterial regulatory proteins, gntR family IX87_03835 PF00701 Dihydrodipicolinate synthetase family IX87_03850 PF00376 MerR family regulatory protein IX87_03850 PF09278 MerR, DNA binding IX87_03860 PF02677 Epoxyqueuosine reductase QueH IX87_03875 PF07690 Major Facilitator Superfamily IX87_03880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IX87_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_03890 PF03466 LysR substrate binding domain IX87_03920 PF10431 C-terminal, D2-small domain, of ClpB protein IX87_03920 PF07724 AAA domain (Cdc48 subfamily) IX87_03920 PF17871 AAA lid domain IX87_03920 PF00004 ATPase family associated with various cellular activities (AAA) IX87_03930 PF01389 OmpA-like transmembrane domain IX87_03930 PF00691 OmpA family IX87_03995 PF00005 ABC transporter IX87_04000 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX87_04005 PF01425 Amidase IX87_04010 PF01402 Ribbon-helix-helix protein, copG family IX87_04010 PF08753 NikR C terminal nickel binding domain IX87_04030 PF01638 HxlR-like helix-turn-helix IX87_04035 PF02525 Flavodoxin-like fold IX87_04040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX87_04040 PF02785 Biotin carboxylase C-terminal domain IX87_04040 PF00289 Biotin carboxylase, N-terminal domain IX87_04055 PF00107 Zinc-binding dehydrogenase IX87_04055 PF13823 Alcohol dehydrogenase GroES-associated IX87_04055 PF08240 Alcohol dehydrogenase GroES-like domain IX87_04090 PF00654 Voltage gated chloride channel IX87_04095 PF00289 Biotin carboxylase, N-terminal domain IX87_04095 PF00364 Biotin-requiring enzyme IX87_04095 PF02785 Biotin carboxylase C-terminal domain IX87_04095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX87_04105 PF07286 Protein of unknown function (DUF1445) IX87_04110 PF03746 LamB/YcsF family IX87_04115 PF01566 Natural resistance-associated macrophage protein IX87_04125 PF03466 LysR substrate binding domain IX87_04125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_04175 PF16671 Actin cross-linking domain IX87_04175 PF04717 Type VI secretion system, phage-baseplate injector IX87_04195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX87_04195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX87_04220 PF02525 Flavodoxin-like fold IX87_04260 PF07690 Major Facilitator Superfamily IX87_04270 PF03279 Bacterial lipid A biosynthesis acyltransferase IX87_04275 PF00563 EAL domain IX87_04275 PF03707 Bacterial signalling protein N terminal repeat IX87_04275 PF00990 Diguanylate cyclase, GGDEF domain IX87_04280 PF00892 EamA-like transporter family IX87_04285 PF01037 Lrp/AsnC ligand binding domain IX87_04295 PF01624 MutS domain I IX87_04295 PF05188 MutS domain II IX87_04295 PF00488 MutS domain V IX87_04295 PF05190 MutS family domain IV IX87_04295 PF05192 MutS domain III IX87_04305 PF00037 4Fe-4S binding domain IX87_04305 PF11953 Domain of unknown function (DUF3470) IX87_04315 PF01596 O-methyltransferase IX87_04325 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_04330 PF01205 Uncharacterized protein family UPF0029 IX87_04340 PF00664 ABC transporter transmembrane region IX87_04340 PF00005 ABC transporter IX87_04340 PF03412 Peptidase C39 family IX87_04345 PF02321 Outer membrane efflux protein IX87_04350 PF00005 ABC transporter IX87_04350 PF12399 Branched-chain amino acid ATP-binding cassette transporter IX87_04355 PF03968 OstA-like protein IX87_04370 PF00571 CBS domain IX87_04370 PF01380 SIS domain IX87_04375 PF01406 tRNA synthetases class I (C) catalytic domain IX87_04375 PF09190 DALR domain IX87_04405 PF01638 HxlR-like helix-turn-helix IX87_04410 PF07690 Major Facilitator Superfamily IX87_04430 PF03807 NADP oxidoreductase coenzyme F420-dependent IX87_04430 PF14748 Pyrroline-5-carboxylate reductase dimerisation IX87_04440 PF00313 'Cold-shock' DNA-binding domain IX87_04445 PF01810 LysE type translocator IX87_04480 PF02601 Exonuclease VII, large subunit IX87_04480 PF13742 OB-fold nucleic acid binding domain IX87_04515 PF09278 MerR, DNA binding IX87_04515 PF00376 MerR family regulatory protein IX87_04520 PF00403 Heavy-metal-associated domain IX87_04530 PF06505 Activator of aromatic catabolism IX87_04530 PF02830 V4R domain IX87_04530 PF00158 Sigma-54 interaction domain IX87_04530 PF02954 Bacterial regulatory protein, Fis family IX87_04535 PF06099 Phenol hydroxylase subunit IX87_04540 PF02332 Methane/Phenol/Toluene Hydroxylase IX87_04545 PF02406 MmoB/DmpM family IX87_04550 PF02332 Methane/Phenol/Toluene Hydroxylase IX87_04550 PF04945 YHS domain IX87_04560 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_04560 PF00175 Oxidoreductase NAD-binding domain IX87_04560 PF00970 Oxidoreductase FAD-binding domain IX87_04570 PF03466 LysR substrate binding domain IX87_04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_04575 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX87_04575 PF00355 Rieske [2Fe-2S] domain IX87_04580 PF00866 Ring hydroxylating beta subunit IX87_04585 PF00175 Oxidoreductase NAD-binding domain IX87_04585 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_04585 PF00970 Oxidoreductase FAD-binding domain IX87_04590 PF00106 short chain dehydrogenase IX87_04595 PF03594 Benzoate membrane transport protein IX87_04600 PF07690 Major Facilitator Superfamily IX87_04610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IX87_04610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IX87_04615 PF00271 Helicase conserved C-terminal domain IX87_04615 PF11898 Domain of unknown function (DUF3418) IX87_04615 PF00270 DEAD/DEAH box helicase IX87_04615 PF04408 Helicase associated domain (HA2) IX87_04615 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IX87_04620 PF10417 C-terminal domain of 1-Cys peroxiredoxin IX87_04620 PF00578 AhpC/TSA family IX87_04640 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_04640 PF13192 Thioredoxin domain IX87_04650 PF00043 Glutathione S-transferase, C-terminal domain IX87_04650 PF02798 Glutathione S-transferase, N-terminal domain IX87_04660 PF02390 Putative methyltransferase IX87_04665 PF00043 Glutathione S-transferase, C-terminal domain IX87_04665 PF13417 Glutathione S-transferase, N-terminal domain IX87_04675 PF13488 Glycine zipper IX87_04675 PF00691 OmpA family IX87_04680 PF01979 Amidohydrolase family IX87_04685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IX87_04685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IX87_04695 PF10672 S-adenosylmethionine-dependent methyltransferase IX87_04695 PF02926 THUMP domain IX87_04695 PF01170 Putative RNA methylase family UPF0020 IX87_04710 PF00004 ATPase family associated with various cellular activities (AAA) IX87_04710 PF10431 C-terminal, D2-small domain, of ClpB protein IX87_04710 PF02861 Clp amino terminal domain, pathogenicity island component IX87_04710 PF07724 AAA domain (Cdc48 subfamily) IX87_04710 PF17871 AAA lid domain IX87_04725 PF02566 OsmC-like protein IX87_04730 PF00027 Cyclic nucleotide-binding domain IX87_04730 PF13545 Crp-like helix-turn-helix domain IX87_04735 PF00248 Aldo/keto reductase family IX87_04750 PF00709 Adenylosuccinate synthetase IX87_04755 PF13393 Histidyl-tRNA synthetase IX87_04760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IX87_04760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX87_04765 PF01411 tRNA synthetases class II (A) IX87_04765 PF02272 DHHA1 domain IX87_04765 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IX87_04770 PF13356 Arm DNA-binding domain IX87_04770 PF00589 Phage integrase family IX87_04785 PF00717 Peptidase S24-like IX87_04790 PF13438 Domain of unknown function (DUF4113) IX87_04790 PF00817 impB/mucB/samB family IX87_04790 PF11799 impB/mucB/samB family C-terminal domain IX87_04830 PF01551 Peptidase family M23 IX87_04830 PF10145 Phage-related minor tail protein IX87_04830 PF01464 Transglycosylase SLT domain IX87_04840 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system IX87_05125 PF00696 Amino acid kinase family IX87_05125 PF01842 ACT domain IX87_05125 PF13840 ACT domain IX87_05130 PF02599 Global regulator protein family IX87_05135 PF01351 Ribonuclease HII IX87_05145 PF01292 Prokaryotic cytochrome b561 IX87_05150 PF00962 Adenosine/AMP deaminase IX87_05155 PF00860 Permease family IX87_05165 PF00743 Flavin-binding monooxygenase-like IX87_05170 PF00106 short chain dehydrogenase IX87_05180 PF02678 Pirin IX87_05180 PF17954 Quercetinase C-terminal cupin domain IX87_05185 PF17932 Tetracyclin repressor-like, C-terminal domain IX87_05185 PF00440 Bacterial regulatory proteins, tetR family IX87_05195 PF00106 short chain dehydrogenase IX87_05200 PF00743 Flavin-binding monooxygenase-like IX87_05205 PF04072 Leucine carboxyl methyltransferase IX87_05210 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX87_05210 PF12833 Helix-turn-helix domain IX87_05215 PF00743 Flavin-binding monooxygenase-like IX87_05220 PF00106 short chain dehydrogenase IX87_05225 PF07859 alpha/beta hydrolase fold IX87_05230 PF05199 GMC oxidoreductase IX87_05240 PF07690 Major Facilitator Superfamily IX87_05250 PF00884 Sulfatase IX87_05255 PF03781 Sulfatase-modifying factor enzyme 1 IX87_05265 PF00355 Rieske [2Fe-2S] domain IX87_05270 PF00175 Oxidoreductase NAD-binding domain IX87_05270 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_05285 PF07690 Major Facilitator Superfamily IX87_05290 PF00378 Enoyl-CoA hydratase/isomerase IX87_05295 PF00171 Aldehyde dehydrogenase family IX87_05305 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_05305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_05305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_05310 PF03573 outer membrane porin, OprD family IX87_05340 PF00701 Dihydrodipicolinate synthetase family IX87_05345 PF00171 Aldehyde dehydrogenase family IX87_05350 PF07729 FCD domain IX87_05350 PF00392 Bacterial regulatory proteins, gntR family IX87_05370 PF07690 Major Facilitator Superfamily IX87_05375 PF08666 SAF domain IX87_05375 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IX87_05400 PF12833 Helix-turn-helix domain IX87_05400 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX87_05405 PF00171 Aldehyde dehydrogenase family IX87_05410 PF00324 Amino acid permease IX87_05425 PF04958 Arginine N-succinyltransferase beta subunit IX87_05430 PF00202 Aminotransferase class-III IX87_05440 PF00171 Aldehyde dehydrogenase family IX87_05450 PF00392 Bacterial regulatory proteins, gntR family IX87_05450 PF07729 FCD domain IX87_05465 PF00324 Amino acid permease IX87_05470 PF01266 FAD dependent oxidoreductase IX87_05475 PF00324 Amino acid permease IX87_05525 PF03527 RHS protein IX87_05525 PF05593 RHS Repeat IX87_05530 PF04717 Type VI secretion system, phage-baseplate injector IX87_05530 PF16671 Actin cross-linking domain IX87_05585 PF03180 NLPA lipoprotein IX87_05595 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_05595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX87_05600 PF00764 Arginosuccinate synthase IX87_05625 PF01979 Amidohydrolase family IX87_05630 PF00929 Exonuclease IX87_05640 PF07715 TonB-dependent Receptor Plug Domain IX87_05640 PF00593 TonB dependent receptor IX87_05645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX87_05645 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_05650 PF00005 ABC transporter IX87_05650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IX87_05655 PF00528 Binding-protein-dependent transport system inner membrane component IX87_05655 PF12911 N-terminal TM domain of oligopeptide transport permease C IX87_05660 PF00528 Binding-protein-dependent transport system inner membrane component IX87_05665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IX87_05670 PF01464 Transglycosylase SLT domain IX87_05670 PF01464 Transglycosylase SLT domain IX87_05670 PF01476 LysM domain IX87_05670 PF01476 LysM domain IX87_05675 PF00929 Exonuclease IX87_05685 PF09297 NADH pyrophosphatase zinc ribbon domain IX87_05685 PF00293 NUDIX domain IX87_05695 PF04972 BON domain IX87_05700 PF02021 Uncharacterised protein family UPF0102 IX87_05705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IX87_05715 PF03466 LysR substrate binding domain IX87_05715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_05720 PF01810 LysE type translocator IX87_05730 PF13411 MerR HTH family regulatory protein IX87_05740 PF01494 FAD binding domain IX87_05745 PF01494 FAD binding domain IX87_05750 PF00557 Metallopeptidase family M24 IX87_05750 PF05195 Aminopeptidase P, N-terminal domain IX87_05820 PF11799 impB/mucB/samB family C-terminal domain IX87_05820 PF13438 Domain of unknown function (DUF4113) IX87_05820 PF00817 impB/mucB/samB family IX87_06065 PF03796 DnaB-like helicase C terminal domain IX87_06065 PF00772 DnaB-like helicase N terminal domain IX87_06185 PF01645 Conserved region in glutamate synthase IX87_06200 PF01565 FAD binding domain IX87_06200 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IX87_06205 PF01451 Low molecular weight phosphotyrosine protein phosphatase IX87_06215 PF00465 Iron-containing alcohol dehydrogenase IX87_06220 PF03061 Thioesterase superfamily IX87_06225 PF05506 Domain of unknown function (DUF756) IX87_06225 PF04185 Phosphoesterase family IX87_06235 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IX87_06235 PF12169 DNA polymerase III subunits gamma and tau domain III IX87_06235 PF12170 DNA polymerase III tau subunit V interacting with alpha IX87_06240 PF07690 Major Facilitator Superfamily IX87_06250 PF00144 Beta-lactamase IX87_06265 PF02803 Thiolase, C-terminal domain IX87_06265 PF00108 Thiolase, N-terminal domain IX87_06275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_06275 PF03466 LysR substrate binding domain IX87_06285 PF01810 LysE type translocator IX87_06290 PF01037 Lrp/AsnC ligand binding domain IX87_06295 PF03594 Benzoate membrane transport protein IX87_06300 PF02308 MgtC family IX87_06305 PF00689 Cation transporting ATPase, C-terminus IX87_06305 PF00690 Cation transporter/ATPase, N-terminus IX87_06325 PF00582 Universal stress protein family IX87_06330 PF00005 ABC transporter IX87_06330 PF12848 ABC transporter IX87_06360 PF00593 TonB dependent receptor IX87_06360 PF07715 TonB-dependent Receptor Plug Domain IX87_06390 PF00924 Mechanosensitive ion channel IX87_06395 PF07715 TonB-dependent Receptor Plug Domain IX87_06395 PF00593 TonB dependent receptor IX87_06400 PF00440 Bacterial regulatory proteins, tetR family IX87_06420 PF01037 Lrp/AsnC ligand binding domain IX87_06425 PF01817 Chorismate mutase type II IX87_06445 PF11940 Domain of unknown function (DUF3458) Ig-like fold IX87_06445 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IX87_06445 PF01433 Peptidase family M1 domain IX87_06460 PF02110 Hydroxyethylthiazole kinase family IX87_06470 PF05970 PIF1-like helicase IX87_06470 PF14493 Helix-turn-helix domain IX87_06475 PF00465 Iron-containing alcohol dehydrogenase IX87_06490 PF00171 Aldehyde dehydrogenase family IX87_06495 PF13520 Amino acid permease IX87_06500 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IX87_06505 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IX87_06510 PF02540 NAD synthase IX87_06510 PF00117 Glutamine amidotransferase class-I IX87_06510 PF00958 GMP synthase C terminal domain IX87_06515 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IX87_06515 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX87_06520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IX87_06525 PF00149 Calcineurin-like phosphoesterase IX87_06535 PF00881 Nitroreductase family IX87_06545 PF17209 Hfq protein IX87_06555 PF01119 DNA mismatch repair protein, C-terminal domain IX87_06555 PF08676 MutL C terminal dimerisation domain IX87_06560 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IX87_06565 PF00849 RNA pseudouridylate synthase IX87_06565 PF01479 S4 domain IX87_06580 PF00849 RNA pseudouridylate synthase IX87_06580 PF01479 S4 domain IX87_06590 PF04284 Protein of unknown function (DUF441) IX87_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_06595 PF03466 LysR substrate binding domain IX87_06610 PF07690 Major Facilitator Superfamily IX87_06615 PF00027 Cyclic nucleotide-binding domain IX87_06615 PF00520 Ion transport protein IX87_06625 PF06434 Aconitate hydratase 2 N-terminus IX87_06625 PF00330 Aconitase family (aconitate hydratase) IX87_06625 PF11791 Aconitate B N-terminal domain IX87_06640 PF01103 Surface antigen IX87_06640 PF07244 Surface antigen variable number repeat IX87_06640 PF17243 POTRA domain TamA domain 1 IX87_06645 PF07690 Major Facilitator Superfamily IX87_06650 PF03232 Ubiquinone biosynthesis protein COQ7 IX87_06670 PF00120 Glutamine synthetase, catalytic domain IX87_06675 PF00486 Transcriptional regulatory protein, C terminal IX87_06675 PF00072 Response regulator receiver domain IX87_06680 PF13493 Domain of unknown function (DUF4118) IX87_06680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_06680 PF00512 His Kinase A (phospho-acceptor) domain IX87_06680 PF02702 Osmosensitive K+ channel His kinase sensor domain IX87_06685 PF02669 K+-transporting ATPase, c chain IX87_06695 PF03814 Potassium-transporting ATPase A subunit IX87_06710 PF03109 ABC1 family IX87_06715 PF00899 ThiF family IX87_06720 PF01613 Flavin reductase like domain IX87_06725 PF00501 AMP-binding enzyme IX87_06725 PF13193 AMP-binding enzyme C-terminal domain IX87_06730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_06730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_06730 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_06735 PF00106 short chain dehydrogenase IX87_06740 PF12833 Helix-turn-helix domain IX87_06745 PF13847 Methyltransferase domain IX87_06745 PF17827 PrmC N-terminal domain IX87_06750 PF03462 PCRF domain IX87_06750 PF00472 RF-1 domain IX87_06760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_06760 PF03466 LysR substrate binding domain IX87_06775 PF00296 Luciferase-like monooxygenase IX87_06785 PF13994 PgaD-like protein IX87_06790 PF00535 Glycosyl transferase family 2 IX87_06795 PF14883 Hypothetical glycosyl hydrolase family 13 IX87_06795 PF01522 Polysaccharide deacetylase IX87_06805 PF03618 Kinase/pyrophosphorylase IX87_06810 PF02896 PEP-utilising enzyme, TIM barrel domain IX87_06810 PF00391 PEP-utilising enzyme, mobile domain IX87_06810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IX87_06820 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IX87_06820 PF06481 COX Aromatic Rich Motif IX87_06825 PF00115 Cytochrome C and Quinol oxidase polypeptide I IX87_06830 PF00510 Cytochrome c oxidase subunit III IX87_06835 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IX87_06840 PF01040 UbiA prenyltransferase family IX87_06845 PF01250 Ribosomal protein S6 IX87_06850 PF01084 Ribosomal protein S18 IX87_06855 PF01281 Ribosomal protein L9, N-terminal domain IX87_06855 PF03948 Ribosomal protein L9, C-terminal domain IX87_06860 PF00772 DnaB-like helicase N terminal domain IX87_06860 PF03796 DnaB-like helicase C terminal domain IX87_06865 PF00842 Alanine racemase, C-terminal domain IX87_06865 PF01168 Alanine racemase, N-terminal domain IX87_06875 PF08379 Bacterial transglutaminase-like N-terminal region IX87_06875 PF01841 Transglutaminase-like superfamily IX87_06885 PF14403 Circularly permuted ATP-grasp type 2 IX87_06900 PF13932 GidA associated domain IX87_06900 PF01134 Glucose inhibited division protein A IX87_06920 PF02954 Bacterial regulatory protein, Fis family IX87_06925 PF01808 AICARFT/IMPCHase bienzyme IX87_06925 PF02142 MGS-like domain IX87_06930 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IX87_06930 PF02844 Phosphoribosylglycinamide synthetase, N domain IX87_06930 PF02843 Phosphoribosylglycinamide synthetase, C domain IX87_06935 PF03180 NLPA lipoprotein IX87_06940 PF00005 ABC transporter IX87_06940 PF09383 NIL domain IX87_06945 PF00528 Binding-protein-dependent transport system inner membrane component IX87_06950 PF00753 Metallo-beta-lactamase superfamily IX87_06950 PF16123 Hydroxyacylglutathione hydrolase C-terminus IX87_06960 PF00375 Sodium:dicarboxylate symporter family IX87_06980 PF07995 Glucose / Sorbosone dehydrogenase IX87_06985 PF00892 EamA-like transporter family IX87_06990 PF01177 Asp/Glu/Hydantoin racemase IX87_07000 PF02470 MlaD protein IX87_07005 PF04403 Paraquat-inducible protein A IX87_07025 PF02080 TrkA-C domain IX87_07025 PF06826 Predicted Permease Membrane Region IX87_07055 PF08946 Osmosensory transporter coiled coil IX87_07055 PF00083 Sugar (and other) transporter IX87_07130 PF07729 FCD domain IX87_07130 PF00392 Bacterial regulatory proteins, gntR family IX87_07140 PF03616 Sodium/glutamate symporter IX87_07145 PF00561 alpha/beta hydrolase fold IX87_07170 PF04076 Bacterial OB fold (BOF) protein IX87_07200 PF00324 Amino acid permease IX87_07205 PF00171 Aldehyde dehydrogenase family IX87_07210 PF00202 Aminotransferase class-III IX87_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_07215 PF03466 LysR substrate binding domain IX87_07290 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX87_07290 PF17287 POTRA domain IX87_07290 PF08479 POTRA domain, ShlB-type IX87_07315 PF00069 Protein kinase domain IX87_07335 PF00814 Glycoprotease family IX87_07340 PF01165 Ribosomal protein S21 IX87_07345 PF09424 Yqey-like protein IX87_07350 PF01435 Peptidase family M48 IX87_07355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX87_07355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX87_07370 PF00156 Phosphoribosyl transferase domain IX87_07375 PF02674 Colicin V production protein IX87_07380 PF01180 Dihydroorotate dehydrogenase IX87_07400 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IX87_07400 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IX87_07405 PF00881 Nitroreductase family IX87_07415 PF00271 Helicase conserved C-terminal domain IX87_07415 PF00270 DEAD/DEAH box helicase IX87_07420 PF00313 'Cold-shock' DNA-binding domain IX87_07430 PF04545 Sigma-70, region 4 IX87_07430 PF00140 Sigma-70 factor, region 1.2 IX87_07430 PF04542 Sigma-70 region 2 IX87_07435 PF04241 Protein of unknown function (DUF423) IX87_07445 PF05690 Thiazole biosynthesis protein ThiG IX87_07455 PF03883 Peroxide stress protein YaaA IX87_07465 PF00753 Metallo-beta-lactamase superfamily IX87_07470 PF07687 Peptidase dimerisation domain IX87_07470 PF01546 Peptidase family M20/M25/M40 IX87_07480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IX87_07485 PF01842 ACT domain IX87_07485 PF00800 Prephenate dehydratase IX87_07485 PF01817 Chorismate mutase type II IX87_07490 PF00756 Putative esterase IX87_07495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_07495 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_07495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_07500 PF00375 Sodium:dicarboxylate symporter family IX87_07505 PF02885 Glycosyl transferase family, helical bundle domain IX87_07505 PF00591 Glycosyl transferase family, a/b domain IX87_07510 PF07023 Protein of unknown function (DUF1315) IX87_07515 PF01513 ATP-NAD kinase IX87_07520 PF14814 Bifunctional transglycosylase second domain IX87_07520 PF00905 Penicillin binding protein transpeptidase domain IX87_07520 PF00912 Transglycosylase IX87_07530 PF00293 NUDIX domain IX87_07540 PF08521 Two-component sensor kinase N-terminal IX87_07540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_07540 PF00512 His Kinase A (phospho-acceptor) domain IX87_07545 PF00486 Transcriptional regulatory protein, C terminal IX87_07545 PF00072 Response regulator receiver domain IX87_07555 PF00437 Type II/IV secretion system protein IX87_07565 PF01980 tRNA-methyltransferase O IX87_07565 PF18389 TrmO C-terminal domain IX87_07570 PF00970 Oxidoreductase FAD-binding domain IX87_07570 PF00175 Oxidoreductase NAD-binding domain IX87_07575 PF02567 Phenazine biosynthesis-like protein IX87_07580 PF00155 Aminotransferase class I and II IX87_07580 PF00392 Bacterial regulatory proteins, gntR family IX87_07590 PF00037 4Fe-4S binding domain IX87_07595 PF00893 Small Multidrug Resistance protein IX87_07600 PF00005 ABC transporter IX87_07605 PF00528 Binding-protein-dependent transport system inner membrane component IX87_07610 PF00528 Binding-protein-dependent transport system inner membrane component IX87_07615 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX87_07630 PF13533 Biotin-lipoyl like IX87_07635 PF00873 AcrB/AcrD/AcrF family IX87_07640 PF02321 Outer membrane efflux protein IX87_07645 PF00464 Serine hydroxymethyltransferase IX87_07730 PF00583 Acetyltransferase (GNAT) family IX87_07825 PF01695 IstB-like ATP binding protein IX87_07845 PF00717 Peptidase S24-like IX87_07845 PF01381 Helix-turn-helix IX87_07920 PF00589 Phage integrase family IX87_07925 PF00005 ABC transporter IX87_07930 PF01061 ABC-2 type transporter IX87_07935 PF14489 QueF-like protein IX87_07935 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IX87_07945 PF01098 Cell cycle protein IX87_07950 PF13406 Transglycosylase SLT domain IX87_07955 PF05036 Sporulation related domain IX87_07955 PF03330 Lytic transglycolase IX87_07975 PF12833 Helix-turn-helix domain IX87_07985 PF00889 Elongation factor TS IX87_07990 PF00318 Ribosomal protein S2 IX87_07995 PF00557 Metallopeptidase family M24 IX87_08005 PF07690 Major Facilitator Superfamily IX87_08020 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_08020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX87_08025 PF04055 Radical SAM superfamily IX87_08030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_08030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_08030 PF09317 Domain of unknown function (DUF1974) IX87_08045 PF05221 S-adenosyl-L-homocysteine hydrolase IX87_08045 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IX87_08050 PF02219 Methylenetetrahydrofolate reductase IX87_08055 PF04452 RNA methyltransferase IX87_08065 PF00390 Malic enzyme, N-terminal domain IX87_08065 PF01515 Phosphate acetyl/butaryl transferase IX87_08065 PF03949 Malic enzyme, NAD binding domain IX87_08070 PF12627 Probable RNA and SrmB- binding site of polymerase A IX87_08070 PF01743 Poly A polymerase head domain IX87_08075 PF13180 PDZ domain IX87_08080 PF01784 NIF3 (NGG1p interacting factor 3) IX87_08085 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IX87_08085 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IX87_08120 PF01040 UbiA prenyltransferase family IX87_08125 PF04345 Chorismate lyase IX87_08135 PF00854 POT family IX87_08145 PF13356 Arm DNA-binding domain IX87_08145 PF00589 Phage integrase family IX87_08230 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system IX87_08405 PF01695 IstB-like ATP binding protein IX87_08440 PF01381 Helix-turn-helix IX87_08470 PF02384 N-6 DNA Methylase IX87_08470 PF12161 HsdM N-terminal domain IX87_08525 PF00117 Glutamine amidotransferase class-I IX87_08530 PF01433 Peptidase family M1 domain IX87_08530 PF11838 ERAP1-like C-terminal domain IX87_08535 PF07715 TonB-dependent Receptor Plug Domain IX87_08535 PF00593 TonB dependent receptor IX87_08540 PF00591 Glycosyl transferase family, a/b domain IX87_08540 PF02885 Glycosyl transferase family, helical bundle domain IX87_08545 PF00218 Indole-3-glycerol phosphate synthase IX87_08560 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IX87_08560 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IX87_08565 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_08565 PF01799 [2Fe-2S] binding domain IX87_08585 PF00144 Beta-lactamase IX87_08600 PF05675 Protein of unknown function (DUF817) IX87_08605 PF01208 Uroporphyrinogen decarboxylase (URO-D) IX87_08615 PF00425 chorismate binding enzyme IX87_08625 PF00975 Thioesterase domain IX87_08630 PF00664 ABC transporter transmembrane region IX87_08630 PF00005 ABC transporter IX87_08635 PF00005 ABC transporter IX87_08635 PF00664 ABC transporter transmembrane region IX87_08645 PF00282 Pyridoxal-dependent decarboxylase conserved domain IX87_08650 PF00857 Isochorismatase family IX87_08650 PF00550 Phosphopantetheine attachment site IX87_08655 PF00501 AMP-binding enzyme IX87_08655 PF13193 AMP-binding enzyme C-terminal domain IX87_08660 PF00550 Phosphopantetheine attachment site IX87_08660 PF00668 Condensation domain IX87_08660 PF00501 AMP-binding enzyme IX87_08665 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IX87_08670 PF00593 TonB dependent receptor IX87_08670 PF07715 TonB-dependent Receptor Plug Domain IX87_08675 PF01497 Periplasmic binding protein IX87_08680 PF00005 ABC transporter IX87_08685 PF01032 FecCD transport family IX87_08690 PF01032 FecCD transport family IX87_08695 PF00501 AMP-binding enzyme IX87_08695 PF13193 AMP-binding enzyme C-terminal domain IX87_08695 PF00550 Phosphopantetheine attachment site IX87_08695 PF00668 Condensation domain IX87_08695 PF00975 Thioesterase domain IX87_08700 PF00668 Condensation domain IX87_08700 PF00550 Phosphopantetheine attachment site IX87_08700 PF13193 AMP-binding enzyme C-terminal domain IX87_08700 PF00501 AMP-binding enzyme IX87_08710 PF08348 YheO-like PAS domain IX87_08710 PF13309 HTH domain IX87_08715 PF00291 Pyridoxal-phosphate dependent enzyme IX87_08720 PF17954 Quercetinase C-terminal cupin domain IX87_08720 PF02678 Pirin IX87_08745 PF13340 Putative transposase of IS4/5 family (DUF4096) IX87_08760 PF04328 Selenoprotein, putative IX87_08765 PF13722 5TM C-terminal transporter carbon starvation CstA IX87_08765 PF02554 Carbon starvation protein CstA IX87_08770 PF01132 Elongation factor P (EF-P) OB domain IX87_08770 PF09285 Elongation factor P, C-terminal IX87_08770 PF08207 Elongation factor P (EF-P) KOW-like domain IX87_08775 PF04055 Radical SAM superfamily IX87_08785 PF12792 CSS motif domain associated with EAL IX87_08785 PF00563 EAL domain IX87_08790 PF01197 Ribosomal protein L31 IX87_08795 PF13593 SBF-like CPA transporter family (DUF4137) IX87_08800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX87_08805 PF07690 Major Facilitator Superfamily IX87_08810 PF13654 AAA domain IX87_08810 PF05362 Lon protease (S16) C-terminal proteolytic domain IX87_08815 PF03466 LysR substrate binding domain IX87_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_08820 PF01476 LysM domain IX87_08820 PF01551 Peptidase family M23 IX87_08825 PF01975 Survival protein SurE IX87_08840 PF07943 Penicillin-binding protein 5, C-terminal domain IX87_08840 PF00768 D-alanyl-D-alanine carboxypeptidase IX87_08845 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_08850 PF00293 NUDIX domain IX87_08850 PF13344 Haloacid dehalogenase-like hydrolase IX87_08860 PF04356 Protein of unknown function (DUF489) IX87_08865 PF00206 Lyase IX87_08865 PF08328 Adenylosuccinate lyase C-terminal IX87_08880 PF01343 Peptidase family S49 IX87_08880 PF08496 Peptidase family S49 N-terminal IX87_08885 PF00005 ABC transporter IX87_08890 PF00528 Binding-protein-dependent transport system inner membrane component IX87_08895 PF00528 Binding-protein-dependent transport system inner membrane component IX87_08900 PF12849 PBP superfamily domain IX87_08905 PF00324 Amino acid permease IX87_08910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX87_08910 PF00205 Thiamine pyrophosphate enzyme, central domain IX87_08910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX87_08915 PF01037 Lrp/AsnC ligand binding domain IX87_08920 PF00171 Aldehyde dehydrogenase family IX87_08925 PF00282 Pyridoxal-dependent decarboxylase conserved domain IX87_08930 PF00202 Aminotransferase class-III IX87_08940 PF00440 Bacterial regulatory proteins, tetR family IX87_08940 PF17754 MftR C-terminal domain IX87_08950 PF00487 Fatty acid desaturase IX87_08955 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_08955 PF00175 Oxidoreductase NAD-binding domain IX87_08955 PF00970 Oxidoreductase FAD-binding domain IX87_08960 PF00440 Bacterial regulatory proteins, tetR family IX87_08970 PF18337 RapA N-terminal Tudor like domain IX87_08970 PF00271 Helicase conserved C-terminal domain IX87_08970 PF00176 SNF2 family N-terminal domain IX87_08970 PF12137 RNA polymerase recycling family C-terminal IX87_08970 PF18339 RapA N-terminal Tudor like domain 1 IX87_08975 PF00849 RNA pseudouridylate synthase IX87_08985 PF00202 Aminotransferase class-III IX87_08990 PF02581 Thiamine monophosphate synthase IX87_09015 PF05193 Peptidase M16 inactive domain IX87_09015 PF00675 Insulinase (Peptidase family M16) IX87_09020 PF02567 Phenazine biosynthesis-like protein IX87_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_09030 PF03466 LysR substrate binding domain IX87_09035 PF06779 Uncharacterised MFS-type transporter YbfB IX87_09050 PF00180 Isocitrate/isopropylmalate dehydrogenase IX87_09055 PF00849 RNA pseudouridylate synthase IX87_09060 PF03971 Monomeric isocitrate dehydrogenase IX87_09070 PF07943 Penicillin-binding protein 5, C-terminal domain IX87_09070 PF00768 D-alanyl-D-alanine carboxypeptidase IX87_09075 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_09080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX87_09085 PF00875 DNA photolyase IX87_09085 PF03441 FAD binding domain of DNA photolyase IX87_09115 PF02350 UDP-N-acetylglucosamine 2-epimerase IX87_09130 PF03060 Nitronate monooxygenase IX87_09135 PF01207 Dihydrouridine synthase (Dus) IX87_09140 PF07759 Protein of unknown function (DUF1615) IX87_09150 PF00696 Amino acid kinase family IX87_09150 PF01472 PUA domain IX87_09155 PF01018 GTP1/OBG IX87_09155 PF01926 50S ribosome-binding GTPase IX87_09170 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX87_09170 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IX87_09175 PF00892 EamA-like transporter family IX87_09195 PF12344 Ultra-violet resistance protein B IX87_09195 PF02151 UvrB/uvrC motif IX87_09195 PF00271 Helicase conserved C-terminal domain IX87_09195 PF17757 UvrB interaction domain IX87_09195 PF04851 Type III restriction enzyme, res subunit IX87_09205 PF00990 Diguanylate cyclase, GGDEF domain IX87_09205 PF17151 Periplasmic sensor domain IX87_09240 PF00106 short chain dehydrogenase IX87_09245 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IX87_09250 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IX87_09255 PF11967 Recombination protein O N terminal IX87_09255 PF02565 Recombination protein O C terminal IX87_09265 PF01926 50S ribosome-binding GTPase IX87_09265 PF07650 KH domain IX87_09270 PF00035 Double-stranded RNA binding motif IX87_09270 PF14622 Ribonuclease-III-like IX87_09280 PF10502 Signal peptidase, peptidase S26 IX87_09285 PF06421 GTP-binding protein LepA C-terminus IX87_09285 PF03144 Elongation factor Tu domain 2 IX87_09285 PF00009 Elongation factor Tu GTP binding domain IX87_09285 PF00679 Elongation factor G C-terminus IX87_09295 PF13180 PDZ domain IX87_09300 PF02910 Fumarate reductase flavoprotein C-term IX87_09300 PF00890 FAD binding domain IX87_09310 PF02223 Thymidylate kinase IX87_09315 PF02618 YceG-like family IX87_09320 PF01063 Amino-transferase class IV IX87_09335 PF00528 Binding-protein-dependent transport system inner membrane component IX87_09340 PF00528 Binding-protein-dependent transport system inner membrane component IX87_09345 PF12857 TOBE-like domain IX87_09345 PF00005 ABC transporter IX87_09350 PF03466 LysR substrate binding domain IX87_09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_09360 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IX87_09360 PF14602 Hexapeptide repeat of succinyl-transferase IX87_09360 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_09370 PF06508 Queuosine biosynthesis protein QueC IX87_09385 PF00578 AhpC/TSA family IX87_09395 PF00293 NUDIX domain IX87_09395 PF01467 Cytidylyltransferase-like IX87_09405 PF01784 NIF3 (NGG1p interacting factor 3) IX87_09415 PF07690 Major Facilitator Superfamily IX87_09420 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IX87_09420 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IX87_09420 PF02769 AIR synthase related protein, C-terminal domain IX87_09425 PF01966 HD domain IX87_09430 PF01330 RuvA N terminal domain IX87_09430 PF07499 RuvA, C-terminal domain IX87_09435 PF05496 Holliday junction DNA helicase RuvB P-loop domain IX87_09435 PF05491 RuvB C-terminal winged helix domain IX87_09435 PF17864 RuvB AAA lid domain IX87_09440 PF01546 Peptidase family M20/M25/M40 IX87_09440 PF07687 Peptidase dimerisation domain IX87_09445 PF03061 Thioesterase superfamily IX87_09450 PF01618 MotA/TolQ/ExbB proton channel family IX87_09455 PF02472 Biopolymer transport protein ExbD/TolR IX87_09465 PF07676 WD40-like Beta Propeller Repeat IX87_09465 PF04052 TolB amino-terminal domain IX87_09470 PF00691 OmpA family IX87_09480 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IX87_09485 PF00588 SpoU rRNA Methylase family IX87_09485 PF08032 RNA 2'-O ribose methyltransferase substrate binding IX87_09525 PF11638 DnaA N-terminal domain IX87_09525 PF08299 Bacterial dnaA protein helix-turn-helix IX87_09525 PF00308 Bacterial dnaA protein IX87_09530 PF01594 AI-2E family transporter IX87_09535 PF02769 AIR synthase related protein, C-terminal domain IX87_09535 PF00586 AIR synthase related protein, N-terminal domain IX87_09540 PF00551 Formyl transferase IX87_09545 PF12697 Alpha/beta hydrolase family IX87_09550 PF06965 Na+/H+ antiporter 1 IX87_09550 PF01343 Peptidase family S49 IX87_09560 PF03772 Competence protein IX87_09560 PF13567 Domain of unknown function (DUF4131) IX87_09560 PF00753 Metallo-beta-lactamase superfamily IX87_09565 PF00005 ABC transporter IX87_09570 PF02687 FtsX-like permease family IX87_09570 PF12704 MacB-like periplasmic core domain IX87_09580 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IX87_09590 PF00266 Aminotransferase class-V IX87_09600 PF13533 Biotin-lipoyl like IX87_09620 PF00535 Glycosyl transferase family 2 IX87_09635 PF03989 DNA gyrase C-terminal domain, beta-propeller IX87_09635 PF00521 DNA gyrase/topoisomerase IV, subunit A IX87_09640 PF01012 Electron transfer flavoprotein domain IX87_09640 PF00766 Electron transfer flavoprotein FAD-binding domain IX87_09645 PF01012 Electron transfer flavoprotein domain IX87_09650 PF00589 Phage integrase family IX87_09650 PF02899 Phage integrase, N-terminal SAM-like domain IX87_09655 PF01810 LysE type translocator IX87_09660 PF01678 Diaminopimelate epimerase IX87_09665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IX87_09665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IX87_09675 PF00324 Amino acid permease IX87_09680 PF18073 Rubredoxin metal binding domain IX87_09690 PF00152 tRNA synthetases class II (D, K and N) IX87_09695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX87_09695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX87_09695 PF11890 Domain of unknown function (DUF3410) IX87_09700 PF06803 Protein of unknown function (DUF1232) IX87_09705 PF02634 FdhD/NarQ family IX87_09710 PF00384 Molybdopterin oxidoreductase IX87_09715 PF02595 Glycerate kinase family IX87_09730 PF00881 Nitroreductase family IX87_09780 PF09857 Putative toxin of bacterial toxin-antitoxin pair IX87_09790 PF00668 Condensation domain IX87_09790 PF00550 Phosphopantetheine attachment site IX87_09790 PF00975 Thioesterase domain IX87_09790 PF00501 AMP-binding enzyme IX87_09790 PF13193 AMP-binding enzyme C-terminal domain IX87_09805 PF03449 Transcription elongation factor, N-terminal IX87_09805 PF01272 Transcription elongation factor, GreA/GreB, C-term IX87_09810 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX87_09810 PF01464 Transglycosylase SLT domain IX87_09820 PF01171 PP-loop family IX87_09825 PF01464 Transglycosylase SLT domain IX87_09830 PF01435 Peptidase family M48 IX87_09840 PF00873 AcrB/AcrD/AcrF family IX87_09845 PF03009 Glycerophosphoryl diester phosphodiesterase family IX87_09855 PF01219 Prokaryotic diacylglycerol kinase IX87_09860 PF00118 TCP-1/cpn60 chaperonin family IX87_09865 PF00166 Chaperonin 10 Kd subunit IX87_09875 PF00149 Calcineurin-like phosphoesterase IX87_09880 PF00781 Diacylglycerol kinase catalytic domain IX87_09885 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain IX87_09885 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain IX87_09890 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IX87_09890 PF01266 FAD dependent oxidoreductase IX87_09895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IX87_09895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IX87_09900 PF00083 Sugar (and other) transporter IX87_09915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IX87_09915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IX87_09935 PF09423 PhoD-like phosphatase IX87_09935 PF16655 PhoD-like phosphatase, N-terminal domain IX87_09955 PF00809 Pterin binding enzyme IX87_09960 PF00004 ATPase family associated with various cellular activities (AAA) IX87_09960 PF01434 Peptidase family M41 IX87_09960 PF06480 FtsH Extracellular IX87_09960 PF17862 AAA+ lid domain IX87_09965 PF01728 FtsJ-like methyltransferase IX87_09970 PF01985 CRS1 / YhbY (CRM) domain IX87_09985 PF00117 Glutamine amidotransferase class-I IX87_09985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IX87_09990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IX87_09990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX87_09990 PF02142 MGS-like domain IX87_09995 PF01272 Transcription elongation factor, GreA/GreB, C-term IX87_09995 PF03449 Transcription elongation factor, N-terminal IX87_10000 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_10005 PF00582 Universal stress protein family IX87_10010 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX87_10020 PF09587 Bacterial capsule synthesis protein PGA_cap IX87_10060 PF00999 Sodium/hydrogen exchanger family IX87_10065 PF04228 Putative neutral zinc metallopeptidase IX87_10070 PF05661 Protein of unknown function (DUF808) IX87_10075 PF00579 tRNA synthetases class I (W and Y) IX87_10080 PF02629 CoA binding domain IX87_10080 PF00549 CoA-ligase IX87_10085 PF08442 ATP-grasp domain IX87_10085 PF00549 CoA-ligase IX87_10090 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_10090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX87_10095 PF02817 e3 binding domain IX87_10095 PF00364 Biotin-requiring enzyme IX87_10095 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX87_10100 PF00676 Dehydrogenase E1 component IX87_10100 PF16870 2-oxoglutarate dehydrogenase C-terminal IX87_10100 PF16078 2-oxoglutarate dehydrogenase N-terminus IX87_10100 PF02779 Transketolase, pyrimidine binding domain IX87_10105 PF13085 2Fe-2S iron-sulfur cluster binding domain IX87_10110 PF00890 FAD binding domain IX87_10110 PF02910 Fumarate reductase flavoprotein C-term IX87_10115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IX87_10120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IX87_10125 PF00285 Citrate synthase, C-terminal domain IX87_10155 PF04545 Sigma-70, region 4 IX87_10155 PF03979 Sigma-70 factor, region 1.1 IX87_10155 PF04546 Sigma-70, non-essential region IX87_10155 PF00140 Sigma-70 factor, region 1.2 IX87_10155 PF04539 Sigma-70 region 3 IX87_10155 PF04542 Sigma-70 region 2 IX87_10160 PF04359 Protein of unknown function (DUF493) IX87_10165 PF03099 Biotin/lipoate A/B protein ligase family IX87_10175 PF00465 Iron-containing alcohol dehydrogenase IX87_10180 PF13520 Amino acid permease IX87_10185 PF03358 NADPH-dependent FMN reductase IX87_10190 PF01638 HxlR-like helix-turn-helix IX87_10195 PF00588 SpoU rRNA Methylase family IX87_10200 PF10414 Sirohaem synthase dimerisation region IX87_10200 PF14824 Sirohaem biosynthesis protein central IX87_10200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IX87_10205 PF02403 Seryl-tRNA synthetase N-terminal domain IX87_10205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX87_10215 PF03548 Outer membrane lipoprotein carrier protein LolA IX87_10220 PF01016 Ribosomal L27 protein IX87_10225 PF00829 Ribosomal prokaryotic L21 protein IX87_10240 PF00348 Polyprenyl synthetase IX87_10245 PF09190 DALR domain IX87_10245 PF01406 tRNA synthetases class I (C) catalytic domain IX87_10250 PF01569 PAP2 superfamily IX87_10255 PF00529 HlyD membrane-fusion protein of T1SS IX87_10255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX87_10260 PF00873 AcrB/AcrD/AcrF family IX87_10265 PF02321 Outer membrane efflux protein IX87_10270 PF01906 Putative heavy-metal-binding IX87_10275 PF01906 Putative heavy-metal-binding IX87_10295 PF00133 tRNA synthetases class I (I, L, M and V) IX87_10295 PF10458 Valyl tRNA synthetase tRNA binding arm IX87_10295 PF08264 Anticodon-binding domain of tRNA IX87_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_10315 PF03466 LysR substrate binding domain IX87_10320 PF00909 Ammonium Transporter Family IX87_10330 PF08521 Two-component sensor kinase N-terminal IX87_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_10330 PF00512 His Kinase A (phospho-acceptor) domain IX87_10335 PF00072 Response regulator receiver domain IX87_10335 PF00486 Transcriptional regulatory protein, C terminal IX87_10340 PF00884 Sulfatase IX87_10340 PF08019 Phosphoethanolamine transferase EptA/EptB IX87_10365 PF01734 Patatin-like phospholipase IX87_10375 PF01145 SPFH domain / Band 7 family IX87_10380 PF04237 YjbR IX87_10385 PF00348 Polyprenyl synthetase IX87_10390 PF04303 PrpF protein IX87_10395 PF00324 Amino acid permease IX87_10405 PF00589 Phage integrase family IX87_10405 PF13356 Arm DNA-binding domain IX87_10495 PF00583 Acetyltransferase (GNAT) family IX87_10590 PF03796 DnaB-like helicase C terminal domain IX87_10590 PF00772 DnaB-like helicase N terminal domain IX87_10615 PF01381 Helix-turn-helix IX87_10670 PF09277 Erythronolide synthase, docking IX87_10670 PF00698 Acyl transferase domain IX87_10670 PF08990 Erythronolide synthase docking IX87_10670 PF14765 Polyketide synthase dehydratase IX87_10670 PF00550 Phosphopantetheine attachment site IX87_10670 PF08659 KR domain IX87_10670 PF08240 Alcohol dehydrogenase GroES-like domain IX87_10670 PF00109 Beta-ketoacyl synthase, N-terminal domain IX87_10670 PF02801 Beta-ketoacyl synthase, C-terminal domain IX87_10670 PF16197 Ketoacyl-synthetase C-terminal extension IX87_10675 PF12833 Helix-turn-helix domain IX87_10675 PF06719 AraC-type transcriptional regulator N-terminus IX87_10680 PF02673 Bacitracin resistance protein BacA IX87_10705 PF02525 Flavodoxin-like fold IX87_10720 PF01507 Phosphoadenosine phosphosulfate reductase family IX87_10725 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain IX87_10725 PF06974 Protein of unknown function (DUF1298) IX87_10735 PF00575 S1 RNA binding domain IX87_10735 PF10150 Ribonuclease E/G family IX87_10740 PF02545 Maf-like protein IX87_10745 PF04093 rod shape-determining protein MreD IX87_10750 PF04085 rod shape-determining protein MreC IX87_10760 PF02686 Glu-tRNAGln amidotransferase C subunit IX87_10765 PF01425 Amidase IX87_10770 PF02934 GatB/GatE catalytic domain IX87_10770 PF02637 GatB domain IX87_10815 PF05992 SbmA/BacA-like family IX87_10820 PF13291 ACT domain IX87_10820 PF00291 Pyridoxal-phosphate dependent enzyme IX87_10825 PF01734 Patatin-like phospholipase IX87_10830 PF01235 Sodium:alanine symporter family IX87_10845 PF00881 Nitroreductase family IX87_10850 PF07690 Major Facilitator Superfamily IX87_10855 PF12805 FUSC-like inner membrane protein yccS IX87_10865 PF00175 Oxidoreductase NAD-binding domain IX87_10865 PF00667 FAD binding domain IX87_10865 PF00258 Flavodoxin IX87_10905 PF17969 L,D-transpeptidase C-terminal domain IX87_10905 PF03734 L,D-transpeptidase catalytic domain IX87_10910 PF04304 Protein of unknown function (DUF454) IX87_10920 PF08085 Entericidin EcnA/B family IX87_10925 PF01546 Peptidase family M20/M25/M40 IX87_10925 PF07687 Peptidase dimerisation domain IX87_10935 PF01627 Hpt domain IX87_10935 PF01584 CheW-like domain IX87_10935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_10935 PF00072 Response regulator receiver domain IX87_10940 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IX87_10940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IX87_10945 PF01584 CheW-like domain IX87_10950 PF00072 Response regulator receiver domain IX87_10955 PF00072 Response regulator receiver domain IX87_10970 PF00873 AcrB/AcrD/AcrF family IX87_10975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX87_10975 PF03129 Anticodon binding domain IX87_10975 PF04073 Aminoacyl-tRNA editing domain IX87_10980 PF07411 Domain of unknown function (DUF1508) IX87_10985 PF03831 PhnA domain IX87_10985 PF08274 PhnA Zinc-Ribbon IX87_10990 PF04343 Protein of unknown function, DUF488 IX87_11000 PF01571 Aminomethyltransferase folate-binding domain IX87_11005 PF10411 Disulfide bond isomerase protein N-terminus IX87_11005 PF13098 Thioredoxin-like domain IX87_11015 PF03547 Membrane transport protein IX87_11020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX87_11025 PF00593 TonB dependent receptor IX87_11025 PF07715 TonB-dependent Receptor Plug Domain IX87_11030 PF02245 Methylpurine-DNA glycosylase (MPG) IX87_11035 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IX87_11035 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IX87_11035 PF06827 Zinc finger found in FPG and IleRS IX87_11050 PF01741 Large-conductance mechanosensitive channel, MscL IX87_11060 PF00860 Permease family IX87_11065 PF05175 Methyltransferase small domain IX87_11065 PF08468 Methyltransferase small domain N-terminal IX87_11070 PF00324 Amino acid permease IX87_11075 PF01139 tRNA-splicing ligase RtcB IX87_11085 PF13505 Outer membrane protein beta-barrel domain IX87_11085 PF00691 OmpA family IX87_11095 PF02803 Thiolase, C-terminal domain IX87_11095 PF00108 Thiolase, N-terminal domain IX87_11105 PF00893 Small Multidrug Resistance protein IX87_11115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX87_11115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX87_11120 PF01011 PQQ enzyme repeat IX87_11125 PF04966 Carbohydrate-selective porin, OprB family IX87_11130 PF02515 CoA-transferase family III IX87_11135 PF02311 AraC-like ligand binding domain IX87_11135 PF12833 Helix-turn-helix domain IX87_11140 PF00108 Thiolase, N-terminal domain IX87_11140 PF02803 Thiolase, C-terminal domain IX87_11145 PF00378 Enoyl-CoA hydratase/isomerase IX87_11145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX87_11145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX87_11185 PF03006 Haemolysin-III related IX87_11190 PF07690 Major Facilitator Superfamily IX87_11190 PF00083 Sugar (and other) transporter IX87_11200 PF07516 SecA Wing and Scaffold domain IX87_11200 PF01043 SecA preprotein cross-linking domain IX87_11200 PF07517 SecA DEAD-like domain IX87_11200 PF02810 SEC-C motif IX87_11205 PF10417 C-terminal domain of 1-Cys peroxiredoxin IX87_11205 PF00578 AhpC/TSA family IX87_11210 PF00753 Metallo-beta-lactamase superfamily IX87_11225 PF02875 Mur ligase family, glutamate ligase domain IX87_11225 PF08245 Mur ligase middle domain IX87_11230 PF01039 Carboxyl transferase domain IX87_11235 PF00290 Tryptophan synthase alpha chain IX87_11260 PF00291 Pyridoxal-phosphate dependent enzyme IX87_11265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IX87_11270 PF00593 TonB dependent receptor IX87_11270 PF07715 TonB-dependent Receptor Plug Domain IX87_11275 PF01923 Cobalamin adenosyltransferase IX87_11280 PF03009 Glycerophosphoryl diester phosphodiesterase family IX87_11295 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IX87_11300 PF00072 Response regulator receiver domain IX87_11300 PF00486 Transcriptional regulatory protein, C terminal IX87_11305 PF00512 His Kinase A (phospho-acceptor) domain IX87_11305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_11305 PF00672 HAMP domain IX87_11315 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX87_11315 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_11315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_11315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_11320 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX87_11320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_11320 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_11320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_11325 PF06146 Phosphate-starvation-inducible E IX87_11345 PF00593 TonB dependent receptor IX87_11345 PF07715 TonB-dependent Receptor Plug Domain IX87_11355 PF02938 GAD domain IX87_11355 PF00152 tRNA synthetases class II (D, K and N) IX87_11355 PF01336 OB-fold nucleic acid binding domain IX87_11360 PF17101 Stealth protein CR1, conserved region 1 IX87_11360 PF11380 Stealth protein CR2, conserved region 2 IX87_11360 PF17102 Stealth protein CR3, conserved region 3 IX87_11405 PF00534 Glycosyl transferases group 1 IX87_11405 PF13439 Glycosyltransferase Family 4 IX87_11410 PF00535 Glycosyl transferase family 2 IX87_11415 PF01522 Polysaccharide deacetylase IX87_11430 PF01063 Amino-transferase class IV IX87_11435 PF08335 GlnD PII-uridylyltransferase IX87_11435 PF03710 Glutamate-ammonia ligase adenylyltransferase IX87_11440 PF00512 His Kinase A (phospho-acceptor) domain IX87_11440 PF01627 Hpt domain IX87_11440 PF00072 Response regulator receiver domain IX87_11440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_11440 PF00672 HAMP domain IX87_11440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IX87_11470 PF04245 37-kD nucleoid-associated bacterial protein IX87_11485 PF02547 Queuosine biosynthesis protein IX87_11500 PF01702 Queuine tRNA-ribosyltransferase IX87_11505 PF02699 Preprotein translocase subunit IX87_11510 PF02355 Protein export membrane protein IX87_11510 PF13721 SecD export protein N-terminal TM region IX87_11510 PF07549 SecD/SecF GG Motif IX87_11515 PF07549 SecD/SecF GG Motif IX87_11515 PF02355 Protein export membrane protein IX87_11520 PF02441 Flavoprotein IX87_11520 PF04127 DNA / pantothenate metabolism flavoprotein IX87_11525 PF04002 RadC-like JAB domain IX87_11530 PF01062 Bestrophin, RFP-TM, chloride channel IX87_11535 PF02811 PHP domain IX87_11540 PF04279 Intracellular septation protein A IX87_11545 PF03795 YCII-related domain IX87_11555 PF01266 FAD dependent oxidoreductase IX87_11555 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IX87_11565 PF04461 Protein of unknown function (DUF520) IX87_11575 PF03061 Thioesterase superfamily IX87_11580 PF00085 Thioredoxin IX87_11585 PF00561 alpha/beta hydrolase fold IX87_11590 PF00753 Metallo-beta-lactamase superfamily IX87_11590 PF04273 Putative phosphatase (DUF442) IX87_11600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX87_11600 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_11635 PF00990 Diguanylate cyclase, GGDEF domain IX87_11635 PF17152 Periplasmic sensor domain IX87_11640 PF01389 OmpA-like transmembrane domain IX87_11640 PF00691 OmpA family IX87_11645 PF00149 Calcineurin-like phosphoesterase IX87_11645 PF10518 TAT (twin-arginine translocation) pathway signal sequence IX87_11650 PF13091 PLD-like domain IX87_11660 PF01926 50S ribosome-binding GTPase IX87_11660 PF13167 GTP-binding GTPase N-terminal IX87_11660 PF16360 GTP-binding GTPase Middle Region IX87_11680 PF00149 Calcineurin-like phosphoesterase IX87_11685 PF00398 Ribosomal RNA adenine dimethylase IX87_11690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IX87_11695 PF00572 Ribosomal protein L13 IX87_11700 PF00380 Ribosomal protein S9/S16 IX87_11705 PF00043 Glutathione S-transferase, C-terminal domain IX87_11705 PF13417 Glutathione S-transferase, N-terminal domain IX87_11710 PF04386 Stringent starvation protein B IX87_11720 PF02785 Biotin carboxylase C-terminal domain IX87_11720 PF00289 Biotin carboxylase, N-terminal domain IX87_11720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX87_11720 PF00364 Biotin-requiring enzyme IX87_11725 PF00378 Enoyl-CoA hydratase/isomerase IX87_11725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX87_11725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX87_11730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_11730 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_11730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_11735 PF01039 Carboxyl transferase domain IX87_11750 PF17932 Tetracyclin repressor-like, C-terminal domain IX87_11750 PF00440 Bacterial regulatory proteins, tetR family IX87_11755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_11755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_11755 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_11800 PF01066 CDP-alcohol phosphatidyltransferase IX87_11805 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IX87_11825 PF00056 lactate/malate dehydrogenase, NAD binding domain IX87_11825 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IX87_11835 PF01464 Transglycosylase SLT domain IX87_11835 PF10145 Phage-related minor tail protein IX87_11835 PF01551 Peptidase family M23 IX87_11840 PF00919 Uncharacterized protein family UPF0004 IX87_11840 PF01938 TRAM domain IX87_11840 PF04055 Radical SAM superfamily IX87_11845 PF02562 PhoH-like protein IX87_11850 PF02130 Uncharacterized protein family UPF0054 IX87_11875 PF03358 NADPH-dependent FMN reductase IX87_11880 PF03631 Virulence factor BrkB IX87_11885 PF00892 EamA-like transporter family IX87_11895 PF01557 Fumarylacetoacetate (FAA) hydrolase family IX87_11945 PF00575 S1 RNA binding domain IX87_11945 PF00773 RNB domain IX87_11945 PF08206 Ribonuclease B OB domain IX87_11945 PF08461 Ribonuclease R winged-helix domain IX87_11945 PF17876 Cold shock domain IX87_11950 PF01432 Peptidase family M3 IX87_11955 PF09526 Probable metal-binding protein (DUF2387) IX87_11990 PF03937 Flavinator of succinate dehydrogenase IX87_11995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_11995 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_11995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_12000 PF00743 Flavin-binding monooxygenase-like IX87_12005 PF01196 Ribosomal protein L17 IX87_12010 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IX87_12010 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IX87_12010 PF01000 RNA polymerase Rpb3/RpoA insert domain IX87_12015 PF01479 S4 domain IX87_12015 PF00163 Ribosomal protein S4/S9 N-terminal domain IX87_12020 PF00411 Ribosomal protein S11 IX87_12025 PF00416 Ribosomal protein S13/S18 IX87_12030 PF00444 Ribosomal protein L36 IX87_12035 PF00344 SecY translocase IX87_12040 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IX87_12045 PF00327 Ribosomal protein L30p/L7e IX87_12050 PF00333 Ribosomal protein S5, N-terminal domain IX87_12050 PF03719 Ribosomal protein S5, C-terminal domain IX87_12055 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IX87_12060 PF00347 Ribosomal protein L6 IX87_12065 PF00410 Ribosomal protein S8 IX87_12070 PF00253 Ribosomal protein S14p/S29e IX87_12075 PF00673 ribosomal L5P family C-terminus IX87_12075 PF00281 Ribosomal protein L5 IX87_12080 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IX87_12080 PF00467 KOW motif IX87_12085 PF00238 Ribosomal protein L14p/L23e IX87_12090 PF00366 Ribosomal protein S17 IX87_12095 PF00831 Ribosomal L29 protein IX87_12100 PF00252 Ribosomal protein L16p/L10e IX87_12105 PF07650 KH domain IX87_12105 PF00189 Ribosomal protein S3, C-terminal domain IX87_12110 PF00237 Ribosomal protein L22p/L17e IX87_12115 PF00203 Ribosomal protein S19 IX87_12120 PF00181 Ribosomal Proteins L2, RNA binding domain IX87_12120 PF03947 Ribosomal Proteins L2, C-terminal domain IX87_12125 PF00276 Ribosomal protein L23 IX87_12130 PF00573 Ribosomal protein L4/L1 family IX87_12135 PF00297 Ribosomal protein L3 IX87_12140 PF00338 Ribosomal protein S10p/S20e IX87_12145 PF00117 Glutamine amidotransferase class-I IX87_12150 PF01053 Cys/Met metabolism PLP-dependent enzyme IX87_12155 PF05872 Bacterial protein of unknown function (DUF853) IX87_12160 PF00175 Oxidoreductase NAD-binding domain IX87_12160 PF00042 Globin IX87_12160 PF00970 Oxidoreductase FAD-binding domain IX87_12165 PF02082 Transcriptional regulator IX87_12170 PF01926 50S ribosome-binding GTPase IX87_12180 PF00375 Sodium:dicarboxylate symporter family IX87_12190 PF01553 Acyltransferase IX87_12205 PF00270 DEAD/DEAH box helicase IX87_12205 PF17191 RecG wedge domain IX87_12205 PF00271 Helicase conserved C-terminal domain IX87_12210 PF00156 Phosphoribosyl transferase domain IX87_12215 PF00293 NUDIX domain IX87_12220 PF03641 Possible lysine decarboxylase IX87_12225 PF01544 CorA-like Mg2+ transporter protein IX87_12235 PF05494 MlaC protein IX87_12245 PF02405 Permease MlaE IX87_12250 PF00005 ABC transporter IX87_12260 PF00271 Helicase conserved C-terminal domain IX87_12260 PF00270 DEAD/DEAH box helicase IX87_12260 PF03880 DbpA RNA binding domain IX87_12260 PF12343 Cold shock protein DEAD box A IX87_12265 PF00459 Inositol monophosphatase family IX87_12270 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IX87_12270 PF02779 Transketolase, pyrimidine binding domain IX87_12270 PF02780 Transketolase, C-terminal domain IX87_12275 PF00925 GTP cyclohydrolase II IX87_12280 PF01218 Coproporphyrinogen III oxidase IX87_12285 PF08501 Shikimate dehydrogenase substrate binding domain IX87_12285 PF01488 Shikimate / quinate 5-dehydrogenase IX87_12285 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IX87_12305 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX87_12305 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_12305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_12305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_12315 PF04024 PspC domain IX87_12320 PF00571 CBS domain IX87_12345 PF02091 Glycyl-tRNA synthetase alpha subunit IX87_12350 PF05746 DALR anticodon binding domain IX87_12350 PF02092 Glycyl-tRNA synthetase beta subunit IX87_12355 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system IX87_12375 PF03466 LysR substrate binding domain IX87_12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_12405 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IX87_12410 PF04996 Succinylarginine dihydrolase IX87_12415 PF00171 Aldehyde dehydrogenase family IX87_12420 PF04958 Arginine N-succinyltransferase beta subunit IX87_12425 PF00202 Aminotransferase class-III IX87_12430 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX87_12430 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IX87_12435 PF00324 Amino acid permease IX87_12455 PF08241 Methyltransferase domain IX87_12475 PF13614 AAA domain IX87_12480 PF01594 AI-2E family transporter IX87_12485 PF00080 Copper/zinc superoxide dismutase (SODC) IX87_12490 PF12805 FUSC-like inner membrane protein yccS IX87_12505 PF02525 Flavodoxin-like fold IX87_12510 PF03992 Antibiotic biosynthesis monooxygenase IX87_12535 PF01565 FAD binding domain IX87_12535 PF02913 FAD linked oxidases, C-terminal domain IX87_12540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX87_12540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX87_12545 PF00892 EamA-like transporter family IX87_12550 PF00892 EamA-like transporter family IX87_12560 PF01925 Sulfite exporter TauE/SafE IX87_12565 PF09157 Pseudouridine synthase II TruB, C-terminal IX87_12565 PF01509 TruB family pseudouridylate synthase (N terminal domain) IX87_12565 PF16198 tRNA pseudouridylate synthase B C-terminal domain IX87_12570 PF03280 Proteobacterial lipase chaperone protein IX87_12575 PF00561 alpha/beta hydrolase fold IX87_12580 PF01245 Ribosomal protein L19 IX87_12585 PF01746 tRNA (Guanine-1)-methyltransferase IX87_12590 PF05239 PRC-barrel domain IX87_12590 PF01782 RimM N-terminal domain IX87_12595 PF00886 Ribosomal protein S16 IX87_12635 PF02401 LytB protein IX87_12640 PF00625 Guanylate kinase IX87_12645 PF01192 RNA polymerase Rpb6 IX87_12650 PF04607 Region found in RelA / SpoT proteins IX87_12650 PF02824 TGS domain IX87_12650 PF13291 ACT domain IX87_12655 PF01042 Endoribonuclease L-PSP IX87_12660 PF04324 BFD-like [2Fe-2S] binding domain IX87_12665 PF00210 Ferritin-like domain IX87_12670 PF15864 Protein glycosylation ligase IX87_12670 PF04932 O-Antigen ligase IX87_12670 PF11846 Virulence factor membrane-bound polymerase, C-terminal IX87_12680 PF00114 Pilin (bacterial filament) IX87_12680 PF07963 Prokaryotic N-terminal methylation motif IX87_12690 PF04536 TPM domain IX87_12695 PF04011 LemA family IX87_12705 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_12705 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IX87_12710 PF00310 Glutamine amidotransferases class-II IX87_12710 PF01493 GXGXG motif IX87_12710 PF01645 Conserved region in glutamate synthase IX87_12710 PF04898 Glutamate synthase central domain IX87_12720 PF13610 DDE domain IX87_12745 PF02522 Aminoglycoside 3-N-acetyltransferase IX87_12765 PF01636 Phosphotransferase enzyme family IX87_12770 PF13610 DDE domain IX87_12780 PF01761 3-dehydroquinate synthase IX87_12785 PF01202 Shikimate kinase IX87_12790 PF11741 AMIN domain IX87_12790 PF00263 Bacterial type II and III secretion system protein IX87_12790 PF03958 Bacterial type II/III secretion system short domain IX87_12790 PF07660 Secretin and TonB N terminus short domain IX87_12815 PF17092 Penicillin-binding protein OB-like domain IX87_12815 PF00912 Transglycosylase IX87_12815 PF00905 Penicillin binding protein transpeptidase domain IX87_12820 PF13847 Methyltransferase domain IX87_12830 PF00953 Glycosyl transferase family 4 IX87_12835 PF08245 Mur ligase middle domain IX87_12835 PF02875 Mur ligase family, glutamate ligase domain IX87_12835 PF01225 Mur ligase family, catalytic domain IX87_12840 PF01225 Mur ligase family, catalytic domain IX87_12840 PF02875 Mur ligase family, glutamate ligase domain IX87_12840 PF08245 Mur ligase middle domain IX87_12845 PF03717 Penicillin-binding Protein dimerisation domain IX87_12845 PF00905 Penicillin binding protein transpeptidase domain IX87_12855 PF01795 MraW methylase family IX87_12870 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX87_12890 PF00324 Amino acid permease IX87_12925 PF01545 Cation efflux family IX87_12930 PF00873 AcrB/AcrD/AcrF family IX87_12935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX87_12935 PF00529 HlyD membrane-fusion protein of T1SS IX87_12955 PF04191 Phospholipid methyltransferase IX87_12985 PF00005 ABC transporter IX87_12985 PF12848 ABC transporter IX87_12990 PF01053 Cys/Met metabolism PLP-dependent enzyme IX87_12995 PF00106 short chain dehydrogenase IX87_13000 PF00916 Sulfate permease family IX87_13000 PF01740 STAS domain IX87_13005 PF09371 Tex-like protein N-terminal domain IX87_13005 PF16921 Tex protein YqgF-like domain IX87_13005 PF00575 S1 RNA binding domain IX87_13005 PF17674 HHH domain IX87_13010 PF00486 Transcriptional regulatory protein, C terminal IX87_13010 PF00072 Response regulator receiver domain IX87_13015 PF00512 His Kinase A (phospho-acceptor) domain IX87_13015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_13015 PF00672 HAMP domain IX87_13020 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IX87_13020 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IX87_13025 PF00583 Acetyltransferase (GNAT) family IX87_13045 PF00475 Imidazoleglycerol-phosphate dehydratase IX87_13050 PF00117 Glutamine amidotransferase class-I IX87_13065 PF00977 Histidine biosynthesis protein IX87_13080 PF03992 Antibiotic biosynthesis monooxygenase IX87_13095 PF01636 Phosphotransferase enzyme family IX87_13100 PF00977 Histidine biosynthesis protein IX87_13115 PF00230 Major intrinsic protein IX87_13140 PF02705 K+ potassium transporter IX87_13165 PF00809 Pterin binding enzyme IX87_13170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX87_13170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX87_13170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX87_13170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX87_13180 PF13610 DDE domain IX87_13190 PF01610 Transposase IX87_13190 PF13542 Helix-turn-helix domain of transposase family ISL3 IX87_13190 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IX87_13195 PF07690 Major Facilitator Superfamily IX87_13205 PF01443 Viral (Superfamily 1) RNA helicase IX87_13205 PF17841 BID domain of Bartonella effector protein (Bep) IX87_13205 PF03389 MobA/MobL family IX87_13225 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IX87_13230 PF01636 Phosphotransferase enzyme family IX87_13250 PF02525 Flavodoxin-like fold IX87_13255 PF01638 HxlR-like helix-turn-helix IX87_13285 PF02311 AraC-like ligand binding domain IX87_13285 PF12833 Helix-turn-helix domain IX87_13290 PF00248 Aldo/keto reductase family IX87_13310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_13310 PF03466 LysR substrate binding domain IX87_13315 PF07690 Major Facilitator Superfamily IX87_13325 PF00324 Amino acid permease IX87_13330 PF00171 Aldehyde dehydrogenase family IX87_13345 PF17853 GGDEF-like domain IX87_13345 PF06018 CodY GAF-like domain IX87_13345 PF13556 PucR C-terminal helix-turn-helix domain IX87_13350 PF12833 Helix-turn-helix domain IX87_13350 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX87_13385 PF01593 Flavin containing amine oxidoreductase IX87_13390 PF05726 Pirin C-terminal cupin domain IX87_13390 PF02678 Pirin IX87_13395 PF00857 Isochorismatase family IX87_13400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_13405 PF00171 Aldehyde dehydrogenase family IX87_13410 PF00202 Aminotransferase class-III IX87_13415 PF00392 Bacterial regulatory proteins, gntR family IX87_13415 PF00155 Aminotransferase class I and II IX87_13420 PF00324 Amino acid permease IX87_13430 PF03591 AzlC protein IX87_13440 PF00436 Single-strand binding protein family IX87_13445 PF07690 Major Facilitator Superfamily IX87_13455 PF08543 Phosphomethylpyrimidine kinase IX87_13455 PF03070 TENA/THI-4/PQQC family IX87_13455 PF02581 Thiamine monophosphate synthase IX87_13460 PF06942 GlpM protein IX87_13470 PF00107 Zinc-binding dehydrogenase IX87_13470 PF08240 Alcohol dehydrogenase GroES-like domain IX87_13475 PF16925 Tetracyclin repressor-like, C-terminal domain IX87_13475 PF00440 Bacterial regulatory proteins, tetR family IX87_13480 PF00005 ABC transporter IX87_13480 PF17760 UvrA interaction domain IX87_13480 PF17755 UvrA DNA-binding domain IX87_13485 PF00990 Diguanylate cyclase, GGDEF domain IX87_13485 PF17158 Membrane-associated sensor, integral membrane domain IX87_13495 PF02028 BCCT, betaine/carnitine/choline family transporter IX87_13515 PF00474 Sodium:solute symporter family IX87_13520 PF04341 Protein of unknown function, DUF485 IX87_13525 PF00072 Response regulator receiver domain IX87_13525 PF01627 Hpt domain IX87_13525 PF00512 His Kinase A (phospho-acceptor) domain IX87_13525 PF00672 HAMP domain IX87_13525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_13535 PF00196 Bacterial regulatory proteins, luxR family IX87_13535 PF00072 Response regulator receiver domain IX87_13540 PF03358 NADPH-dependent FMN reductase IX87_13545 PF00296 Luciferase-like monooxygenase IX87_13550 PF01037 Lrp/AsnC ligand binding domain IX87_13555 PF00857 Isochorismatase family IX87_13560 PF00501 AMP-binding enzyme IX87_13560 PF16177 Acetyl-coenzyme A synthetase N-terminus IX87_13560 PF13193 AMP-binding enzyme C-terminal domain IX87_13570 PF00924 Mechanosensitive ion channel IX87_13575 PF04452 RNA methyltransferase IX87_13580 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IX87_13585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX87_13595 PF00472 RF-1 domain IX87_13595 PF03462 PCRF domain IX87_13605 PF17768 RecJ OB domain IX87_13605 PF02272 DHHA1 domain IX87_13605 PF01368 DHH family IX87_13610 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IX87_13610 PF01243 Pyridoxamine 5'-phosphate oxidase IX87_13615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX87_13615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX87_13615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX87_13615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX87_13620 PF00478 IMP dehydrogenase / GMP reductase domain IX87_13620 PF00571 CBS domain IX87_13625 PF03692 Putative zinc- or iron-chelating domain IX87_13630 PF00258 Flavodoxin IX87_13630 PF01613 Flavin reductase like domain IX87_13645 PF00593 TonB dependent receptor IX87_13645 PF07715 TonB-dependent Receptor Plug Domain IX87_13650 PF01169 Uncharacterized protein family UPF0016 IX87_13660 PF00364 Biotin-requiring enzyme IX87_13660 PF02817 e3 binding domain IX87_13660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX87_13665 PF00456 Transketolase, thiamine diphosphate binding domain IX87_13665 PF17831 Pyruvate dehydrogenase E1 component middle domain IX87_13670 PF01551 Peptidase family M23 IX87_13680 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IX87_13685 PF12327 FtsZ family, C-terminal domain IX87_13685 PF00091 Tubulin/FtsZ family, GTPase domain IX87_13690 PF02491 SHS2 domain inserted in FTSA IX87_13695 PF03799 Cell division protein FtsQ IX87_13695 PF08478 POTRA domain, FtsQ-type IX87_13700 PF01820 D-ala D-ala ligase N-terminus IX87_13700 PF07478 D-ala D-ala ligase C-terminus IX87_13705 PF08245 Mur ligase middle domain IX87_13705 PF02875 Mur ligase family, glutamate ligase domain IX87_13705 PF01225 Mur ligase family, catalytic domain IX87_13710 PF03033 Glycosyltransferase family 28 N-terminal domain IX87_13710 PF04101 Glycosyltransferase family 28 C-terminal domain IX87_13715 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IX87_13715 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IX87_13735 PF00593 TonB dependent receptor IX87_13735 PF07715 TonB-dependent Receptor Plug Domain IX87_13740 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IX87_13745 PF02463 RecF/RecN/SMC N terminal domain IX87_13755 PF00156 Phosphoribosyl transferase domain IX87_13760 PF03372 Endonuclease/Exonuclease/phosphatase family IX87_13765 PF03960 ArsC family IX87_13775 PF07859 alpha/beta hydrolase fold IX87_13780 PF00990 Diguanylate cyclase, GGDEF domain IX87_13780 PF07694 5TMR of 5TMR-LYT IX87_13785 PF02683 Cytochrome C biogenesis protein transmembrane region IX87_13785 PF11412 Disulphide bond corrector protein DsbC IX87_13815 PF00576 HIUase/Transthyretin family IX87_13820 PF00860 Permease family IX87_13830 PF01494 FAD binding domain IX87_13835 PF03561 Allantoicase repeat IX87_13840 PF04115 Ureidoglycolate lyase IX87_13845 PF01751 Toprim domain IX87_13845 PF00204 DNA gyrase B IX87_13845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_13845 PF00986 DNA gyrase B subunit, carboxyl terminus IX87_13850 PF05728 Uncharacterised protein family (UPF0227) IX87_13890 PF04717 Type VI secretion system, phage-baseplate injector IX87_13895 PF02600 Disulfide bond formation protein DsbB IX87_13900 PF04262 Glutamate-cysteine ligase IX87_13915 PF04286 Protein of unknown function (DUF445) IX87_13920 PF00155 Aminotransferase class I and II IX87_13925 PF01554 MatE IX87_13930 PF00106 short chain dehydrogenase IX87_13940 PF00486 Transcriptional regulatory protein, C terminal IX87_13940 PF00072 Response regulator receiver domain IX87_13945 PF00989 PAS fold IX87_13945 PF11808 Phosphate regulon sensor protein PhoR IX87_13945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_13945 PF00512 His Kinase A (phospho-acceptor) domain IX87_13955 PF02666 Phosphatidylserine decarboxylase IX87_13960 PF00581 Rhodanese-like domain IX87_13965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IX87_13965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IX87_13970 PF02580 D-Tyr-tRNA(Tyr) deacylase IX87_13995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IX87_13995 PF00925 GTP cyclohydrolase II IX87_14000 PF00885 6,7-dimethyl-8-ribityllumazine synthase IX87_14005 PF01029 NusB family IX87_14010 PF02769 AIR synthase related protein, C-terminal domain IX87_14010 PF00586 AIR synthase related protein, N-terminal domain IX87_14015 PF04608 Phosphatidylglycerophosphatase A IX87_14020 PF14602 Hexapeptide repeat of succinyl-transferase IX87_14020 PF12804 MobA-like NTP transferase domain IX87_14020 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_14025 PF01380 SIS domain IX87_14030 PF01177 Asp/Glu/Hydantoin racemase IX87_14045 PF00491 Arginase family IX87_14050 PF01979 Amidohydrolase family IX87_14055 PF00324 Amino acid permease IX87_14060 PF00221 Aromatic amino acid lyase IX87_14065 PF01175 Urocanase Rossmann-like domain IX87_14065 PF17392 Urocanase C-terminal domain IX87_14065 PF17391 Urocanase N-terminal domain IX87_14070 PF05962 HutD IX87_14075 PF00392 Bacterial regulatory proteins, gntR family IX87_14075 PF07702 UTRA domain IX87_14085 PF07683 Cobalamin synthesis protein cobW C-terminal domain IX87_14085 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX87_14095 PF00324 Amino acid permease IX87_14105 PF02798 Glutathione S-transferase, N-terminal domain IX87_14105 PF14497 Glutathione S-transferase, C-terminal domain IX87_14110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX87_14120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX87_14125 PF04463 Protein of unknown function (DUF523) IX87_14130 PF01554 MatE IX87_14135 PF01758 Sodium Bile acid symporter family IX87_14140 PF00857 Isochorismatase family IX87_14145 PF00701 Dihydrodipicolinate synthetase family IX87_14155 PF01259 SAICAR synthetase IX87_14165 PF01226 Formate/nitrite transporter IX87_14170 PF12002 MgsA AAA+ ATPase C terminal IX87_14170 PF16193 AAA C-terminal domain IX87_14170 PF00004 ATPase family associated with various cellular activities (AAA) IX87_14175 PF07995 Glucose / Sorbosone dehydrogenase IX87_14180 PF03692 Putative zinc- or iron-chelating domain IX87_14185 PF07043 Protein of unknown function (DUF1328) IX87_14200 PF10576 Iron-sulfur binding domain of endonuclease III IX87_14200 PF00730 HhH-GPD superfamily base excision DNA repair protein IX87_14200 PF14815 NUDIX domain IX87_14200 PF00633 Helix-hairpin-helix motif IX87_14215 PF03352 Methyladenine glycosylase IX87_14220 PF00107 Zinc-binding dehydrogenase IX87_14220 PF08240 Alcohol dehydrogenase GroES-like domain IX87_14225 PF00392 Bacterial regulatory proteins, gntR family IX87_14225 PF00155 Aminotransferase class I and II IX87_14235 PF03466 LysR substrate binding domain IX87_14235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_14240 PF00248 Aldo/keto reductase family IX87_14245 PF07690 Major Facilitator Superfamily IX87_14255 PF01113 Dihydrodipicolinate reductase, N-terminus IX87_14255 PF05173 Dihydrodipicolinate reductase, C-terminus IX87_14265 PF00226 DnaJ domain IX87_14265 PF00684 DnaJ central domain IX87_14265 PF01556 DnaJ C terminal domain IX87_14275 PF00873 AcrB/AcrD/AcrF family IX87_14280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX87_14285 PF00440 Bacterial regulatory proteins, tetR family IX87_14285 PF08361 MAATS-type transcriptional repressor, C-terminal region IX87_14290 PF00311 Phosphoenolpyruvate carboxylase IX87_14295 PF00860 Permease family IX87_14300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_14300 PF03466 LysR substrate binding domain IX87_14315 PF00920 Dehydratase family IX87_14320 PF02911 Formyl transferase, C-terminal domain IX87_14320 PF00551 Formyl transferase IX87_14325 PF01189 16S rRNA methyltransferase RsmB/F IX87_14325 PF01029 NusB family IX87_14335 PF00209 Sodium:neurotransmitter symporter family IX87_14380 PF00579 tRNA synthetases class I (W and Y) IX87_14385 PF03702 Anhydro-N-acetylmuramic acid kinase IX87_14390 PF00561 alpha/beta hydrolase fold IX87_14395 PF01521 Iron-sulphur cluster biosynthesis IX87_14415 PF00005 ABC transporter IX87_14415 PF12848 ABC transporter IX87_14420 PF09335 SNARE associated Golgi protein IX87_14430 PF00986 DNA gyrase B subunit, carboxyl terminus IX87_14430 PF01751 Toprim domain IX87_14430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_14430 PF00204 DNA gyrase B IX87_14430 PF18053 DNA gyrase B subunit insert domain IX87_14435 PF02463 RecF/RecN/SMC N terminal domain IX87_14440 PF00712 DNA polymerase III beta subunit, N-terminal domain IX87_14440 PF02768 DNA polymerase III beta subunit, C-terminal domain IX87_14440 PF02767 DNA polymerase III beta subunit, central domain IX87_14445 PF08299 Bacterial dnaA protein helix-turn-helix IX87_14445 PF11638 DnaA N-terminal domain IX87_14445 PF00308 Bacterial dnaA protein IX87_14450 PF00468 Ribosomal protein L34 IX87_14455 PF00825 Ribonuclease P IX87_14460 PF01809 Putative membrane protein insertion efficiency factor IX87_14465 PF02096 60Kd inner membrane protein IX87_14465 PF14849 YidC periplasmic domain IX87_14470 PF12631 MnmE helical domain IX87_14470 PF10396 GTP-binding protein TrmE N-terminus IX87_14470 PF01926 50S ribosome-binding GTPase IX87_14475 PF02583 Metal-sensitive transcriptional repressor IX87_14480 PF16916 Dimerisation domain of Zinc Transporter IX87_14480 PF01545 Cation efflux family IX87_14485 PF13098 Thioredoxin-like domain IX87_14485 PF10411 Disulfide bond isomerase protein N-terminus IX87_14505 PF00156 Phosphoribosyl transferase domain IX87_14515 PF01979 Amidohydrolase family IX87_14520 PF00355 Rieske [2Fe-2S] domain IX87_14525 PF03738 Glutathionylspermidine synthase preATP-grasp IX87_14535 PF03741 Integral membrane protein TerC family IX87_14540 PF01569 PAP2 superfamily IX87_14550 PF01225 Mur ligase family, catalytic domain IX87_14550 PF02875 Mur ligase family, glutamate ligase domain IX87_14550 PF08245 Mur ligase middle domain IX87_14565 PF00731 AIR carboxylase IX87_14570 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IX87_14570 PF02222 ATP-grasp domain IX87_14575 PF13406 Transglycosylase SLT domain IX87_14595 PF00012 Hsp70 protein IX87_14605 PF01025 GrpE IX87_14610 PF03466 LysR substrate binding domain IX87_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_14630 PF07859 alpha/beta hydrolase fold IX87_14635 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IX87_14675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX87_14680 PF01252 Signal peptidase (SPase) II IX87_14685 PF00133 tRNA synthetases class I (I, L, M and V) IX87_14685 PF08264 Anticodon-binding domain of tRNA IX87_14685 PF06827 Zinc finger found in FPG and IleRS IX87_14690 PF06574 FAD synthetase IX87_14690 PF01687 Riboflavin kinase IX87_14700 PF01048 Phosphorylase superfamily IX87_14705 PF08362 YcdC-like protein, C-terminal region IX87_14705 PF00440 Bacterial regulatory proteins, tetR family IX87_14710 PF00005 ABC transporter IX87_14715 PF00528 Binding-protein-dependent transport system inner membrane component IX87_14720 PF00296 Luciferase-like monooxygenase IX87_14725 PF09084 NMT1/THI5 like IX87_14730 PF09084 NMT1/THI5 like IX87_14735 PF00583 Acetyltransferase (GNAT) family IX87_14735 PF00696 Amino acid kinase family IX87_14750 PF00106 short chain dehydrogenase IX87_14755 PF13419 Haloacid dehalogenase-like hydrolase IX87_14765 PF01323 DSBA-like thioredoxin domain IX87_14770 PF08360 QacR-like protein, C-terminal region IX87_14770 PF00440 Bacterial regulatory proteins, tetR family IX87_14775 PF00440 Bacterial regulatory proteins, tetR family IX87_14780 PF00175 Oxidoreductase NAD-binding domain IX87_14785 PF00487 Fatty acid desaturase IX87_14790 PF03725 3' exoribonuclease family, domain 2 IX87_14790 PF01138 3' exoribonuclease family, domain 1 IX87_14800 PF05506 Domain of unknown function (DUF756) IX87_14800 PF04185 Phosphoesterase family IX87_14810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IX87_14810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IX87_14815 PF01510 N-acetylmuramoyl-L-alanine amidase IX87_14820 PF03023 Lipid II flippase MurJ IX87_14825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX87_14825 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IX87_14830 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IX87_14830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX87_14835 PF02706 Chain length determinant protein IX87_14835 PF13807 G-rich domain on putative tyrosine kinase IX87_14835 PF13614 AAA domain IX87_14840 PF01451 Low molecular weight phosphotyrosine protein phosphatase IX87_14845 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IX87_14845 PF10531 SLBB domain IX87_14845 PF02563 Polysaccharide biosynthesis/export protein IX87_14850 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IX87_14850 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IX87_14850 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IX87_14855 PF01370 NAD dependent epimerase/dehydratase family IX87_14880 PF08485 Polysaccharide biosynthesis protein C-terminal IX87_14880 PF02719 Polysaccharide biosynthesis protein IX87_14885 PF01370 NAD dependent epimerase/dehydratase family IX87_14890 PF02350 UDP-N-acetylglucosamine 2-epimerase IX87_14895 PF13579 Glycosyl transferase 4-like domain IX87_14900 PF01370 NAD dependent epimerase/dehydratase family IX87_14905 PF00953 Glycosyl transferase family 4 IX87_14920 PF02397 Bacterial sugar transferase IX87_14925 PF00483 Nucleotidyl transferase IX87_14930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IX87_14930 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IX87_14930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IX87_14935 PF00342 Phosphoglucose isomerase IX87_14940 PF16363 GDP-mannose 4,6 dehydratase IX87_14945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX87_14945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX87_14945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX87_14945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX87_14950 PF02652 L-lactate permease IX87_14955 PF07729 FCD domain IX87_14955 PF00392 Bacterial regulatory proteins, gntR family IX87_14960 PF01070 FMN-dependent dehydrogenase IX87_14965 PF09330 D-lactate dehydrogenase, membrane binding IX87_14965 PF01565 FAD binding domain IX87_14970 PF00155 Aminotransferase class I and II IX87_14975 PF00392 Bacterial regulatory proteins, gntR family IX87_14975 PF07729 FCD domain IX87_14985 PF00285 Citrate synthase, C-terminal domain IX87_14990 PF00330 Aconitase family (aconitate hydratase) IX87_14990 PF00694 Aconitase C-terminal domain IX87_15005 PF00293 NUDIX domain IX87_15020 PF00109 Beta-ketoacyl synthase, N-terminal domain IX87_15020 PF02801 Beta-ketoacyl synthase, C-terminal domain IX87_15035 PF00849 RNA pseudouridylate synthase IX87_15050 PF00593 TonB dependent receptor IX87_15050 PF07715 TonB-dependent Receptor Plug Domain IX87_15060 PF01037 Lrp/AsnC ligand binding domain IX87_15065 PF01266 FAD dependent oxidoreductase IX87_15070 PF00842 Alanine racemase, C-terminal domain IX87_15070 PF01168 Alanine racemase, N-terminal domain IX87_15075 PF01042 Endoribonuclease L-PSP IX87_15080 PF00324 Amino acid permease IX87_15085 PF00324 Amino acid permease IX87_15095 PF00171 Aldehyde dehydrogenase family IX87_15100 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX87_15100 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX87_15105 PF00501 AMP-binding enzyme IX87_15105 PF13193 AMP-binding enzyme C-terminal domain IX87_15110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_15110 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_15110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_15115 PF00378 Enoyl-CoA hydratase/isomerase IX87_15120 PF00378 Enoyl-CoA hydratase/isomerase IX87_15125 PF07690 Major Facilitator Superfamily IX87_15125 PF00083 Sugar (and other) transporter IX87_15130 PF00765 Autoinducer synthase IX87_15140 PF00196 Bacterial regulatory proteins, luxR family IX87_15140 PF03472 Autoinducer binding domain IX87_15155 PF00501 AMP-binding enzyme IX87_15160 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_15160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_15160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_15165 PF00550 Phosphopantetheine attachment site IX87_15165 PF08242 Methyltransferase domain IX87_15165 PF02801 Beta-ketoacyl synthase, C-terminal domain IX87_15165 PF00109 Beta-ketoacyl synthase, N-terminal domain IX87_15165 PF16197 Ketoacyl-synthetase C-terminal extension IX87_15165 PF00975 Thioesterase domain IX87_15165 PF14765 Polyketide synthase dehydratase IX87_15170 PF00501 AMP-binding enzyme IX87_15170 PF13193 AMP-binding enzyme C-terminal domain IX87_15170 PF00975 Thioesterase domain IX87_15170 PF00668 Condensation domain IX87_15170 PF00550 Phosphopantetheine attachment site IX87_15185 PF16363 GDP-mannose 4,6 dehydratase IX87_15190 PF01648 4'-phosphopantetheinyl transferase superfamily IX87_15205 PF01722 BolA-like protein IX87_15215 PF13614 AAA domain IX87_15230 PF09335 SNARE associated Golgi protein IX87_15235 PF07681 DoxX IX87_15240 PF04286 Protein of unknown function (DUF445) IX87_15245 PF02540 NAD synthase IX87_15245 PF00117 Glutamine amidotransferase class-I IX87_15245 PF00958 GMP synthase C terminal domain IX87_15250 PF01909 Nucleotidyltransferase domain IX87_15250 PF13427 Domain of unknown function (DUF4111) IX87_15255 PF03551 Transcriptional regulator PadR-like family IX87_15265 PF05726 Pirin C-terminal cupin domain IX87_15265 PF02678 Pirin IX87_15285 PF05746 DALR anticodon binding domain IX87_15285 PF03485 Arginyl tRNA synthetase N terminal domain IX87_15285 PF00750 tRNA synthetases class I (R) IX87_15290 PF03949 Malic enzyme, NAD binding domain IX87_15290 PF00390 Malic enzyme, N-terminal domain IX87_15295 PF04261 Dyp-type peroxidase family IX87_15300 PF01810 LysE type translocator IX87_15305 PF00950 ABC 3 transport family IX87_15310 PF00005 ABC transporter IX87_15330 PF00119 ATP synthase A chain IX87_15335 PF00137 ATP synthase subunit C IX87_15340 PF00430 ATP synthase B/B' CF(0) IX87_15345 PF00213 ATP synthase delta (OSCP) subunit IX87_15350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX87_15350 PF02874 ATP synthase alpha/beta family, beta-barrel domain IX87_15350 PF00306 ATP synthase alpha/beta chain, C terminal domain IX87_15355 PF00231 ATP synthase IX87_15360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX87_15360 PF02874 ATP synthase alpha/beta family, beta-barrel domain IX87_15365 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IX87_15375 PF00255 Glutathione peroxidase IX87_15385 PF07690 Major Facilitator Superfamily IX87_15390 PF00440 Bacterial regulatory proteins, tetR family IX87_15395 PF00892 EamA-like transporter family IX87_15400 PF01300 Telomere recombination IX87_15405 PF17782 DprA winged helix domain IX87_15405 PF02481 DNA recombination-mediator protein A IX87_15415 PF01327 Polypeptide deformylase IX87_15440 PF00440 Bacterial regulatory proteins, tetR family IX87_15475 PF00291 Pyridoxal-phosphate dependent enzyme IX87_15485 PF03358 NADPH-dependent FMN reductase IX87_15505 PF04055 Radical SAM superfamily IX87_15505 PF11842 Domain of unknown function (DUF3362) IX87_15505 PF08497 Radical SAM N-terminal IX87_15520 PF11799 impB/mucB/samB family C-terminal domain IX87_15520 PF00817 impB/mucB/samB family IX87_15520 PF11798 IMS family HHH motif IX87_15530 PF07690 Major Facilitator Superfamily IX87_15545 PF03641 Possible lysine decarboxylase IX87_15550 PF03471 Transporter associated domain IX87_15550 PF03741 Integral membrane protein TerC family IX87_15555 PF02810 SEC-C motif IX87_15560 PF03458 UPF0126 domain IX87_15565 PF07690 Major Facilitator Superfamily IX87_15570 PF03989 DNA gyrase C-terminal domain, beta-propeller IX87_15570 PF00521 DNA gyrase/topoisomerase IV, subunit A IX87_15575 PF00501 AMP-binding enzyme IX87_15575 PF13193 AMP-binding enzyme C-terminal domain IX87_15590 PF00719 Inorganic pyrophosphatase IX87_15595 PF03573 outer membrane porin, OprD family IX87_15615 PF00701 Dihydrodipicolinate synthetase family IX87_15625 PF00155 Aminotransferase class I and II IX87_15625 PF00392 Bacterial regulatory proteins, gntR family IX87_15630 PF13335 Magnesium chelatase, subunit ChlI C-terminal IX87_15630 PF01078 Magnesium chelatase, subunit ChlI IX87_15640 PF00543 Nitrogen regulatory protein P-II IX87_15645 PF00909 Ammonium Transporter Family IX87_15650 PF03477 ATP cone domain IX87_15655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IX87_15655 PF01872 RibD C-terminal domain IX87_15665 PF00677 Lumazine binding domain IX87_15685 PF00883 Cytosol aminopeptidase family, catalytic domain IX87_15685 PF02789 Cytosol aminopeptidase family, N-terminal domain IX87_15695 PF03739 Lipopolysaccharide export system permease LptF/LptG IX87_15700 PF01676 Metalloenzyme superfamily IX87_15700 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IX87_15705 PF00595 PDZ domain IX87_15705 PF03572 Peptidase family S41 IX87_15710 PF00072 Response regulator receiver domain IX87_15710 PF00158 Sigma-54 interaction domain IX87_15710 PF02954 Bacterial regulatory protein, Fis family IX87_15730 PF00512 His Kinase A (phospho-acceptor) domain IX87_15730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_15735 PF00072 Response regulator receiver domain IX87_15735 PF00196 Bacterial regulatory proteins, luxR family IX87_15740 PF00768 D-alanyl-D-alanine carboxypeptidase IX87_15745 PF00291 Pyridoxal-phosphate dependent enzyme IX87_15750 PF03447 Homoserine dehydrogenase, NAD binding domain IX87_15750 PF00742 Homoserine dehydrogenase IX87_15750 PF01842 ACT domain IX87_15755 PF10411 Disulfide bond isomerase protein N-terminus IX87_15755 PF13098 Thioredoxin-like domain IX87_15760 PF02899 Phage integrase, N-terminal SAM-like domain IX87_15760 PF00589 Phage integrase family IX87_15770 PF07670 Nucleoside recognition IX87_15770 PF02421 Ferrous iron transport protein B IX87_15770 PF07664 Ferrous iron transport protein B C terminus IX87_15780 PF02875 Mur ligase family, glutamate ligase domain IX87_15780 PF08245 Mur ligase middle domain IX87_15785 PF01098 Cell cycle protein IX87_15790 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX87_15795 PF01258 Prokaryotic dksA/traR C4-type zinc finger IX87_15800 PF00149 Calcineurin-like phosphoesterase IX87_15805 PF00293 NUDIX domain IX87_15810 PF13667 ThiC-associated domain IX87_15810 PF01964 Radical SAM ThiC family IX87_15825 PF00892 EamA-like transporter family IX87_15830 PF02321 Outer membrane efflux protein IX87_15835 PF01895 PhoU domain IX87_15840 PF04362 Bacterial Fe(2+) trafficking IX87_15845 PF00206 Lyase IX87_15845 PF14698 Argininosuccinate lyase C-terminal IX87_15850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_15850 PF06580 Histidine kinase IX87_15850 PF07694 5TMR of 5TMR-LYT IX87_15855 PF04397 LytTr DNA-binding domain IX87_15855 PF00072 Response regulator receiver domain IX87_15860 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IX87_15860 PF03900 Porphobilinogen deaminase, C-terminal domain IX87_15885 PF00816 H-NS histone family IX87_15900 PF03958 Bacterial type II/III secretion system short domain IX87_15900 PF00263 Bacterial type II and III secretion system protein IX87_15905 PF12401 Protein of unknown function (DUF2662) IX87_15905 PF00498 FHA domain IX87_15910 PF13419 Haloacid dehalogenase-like hydrolase IX87_15915 PF04715 Anthranilate synthase component I, N terminal region IX87_15915 PF00425 chorismate binding enzyme IX87_15945 PF00009 Elongation factor Tu GTP binding domain IX87_15945 PF03144 Elongation factor Tu domain 2 IX87_15945 PF03143 Elongation factor Tu C-terminal domain IX87_15955 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IX87_15960 PF00467 KOW motif IX87_15960 PF02357 Transcription termination factor nusG IX87_15965 PF00298 Ribosomal protein L11, RNA binding domain IX87_15965 PF03946 Ribosomal protein L11, N-terminal domain IX87_15970 PF00687 Ribosomal protein L1p/L10e family IX87_15975 PF00466 Ribosomal protein L10 IX87_15980 PF16320 Ribosomal protein L7/L12 dimerisation domain IX87_15980 PF00542 Ribosomal protein L7/L12 C-terminal domain IX87_15985 PF04565 RNA polymerase Rpb2, domain 3 IX87_15985 PF04560 RNA polymerase Rpb2, domain 7 IX87_15985 PF00562 RNA polymerase Rpb2, domain 6 IX87_15985 PF04563 RNA polymerase beta subunit IX87_15985 PF10385 RNA polymerase beta subunit external 1 domain IX87_15985 PF04561 RNA polymerase Rpb2, domain 2 IX87_15990 PF00623 RNA polymerase Rpb1, domain 2 IX87_15990 PF04997 RNA polymerase Rpb1, domain 1 IX87_15990 PF04983 RNA polymerase Rpb1, domain 3 IX87_15990 PF05000 RNA polymerase Rpb1, domain 4 IX87_15990 PF04998 RNA polymerase Rpb1, domain 5 IX87_16010 PF00561 alpha/beta hydrolase fold IX87_16015 PF03553 Na+/H+ antiporter family IX87_16015 PF13726 Na+-H+ antiporter family IX87_16030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_16030 PF00183 Hsp90 protein IX87_16045 PF01323 DSBA-like thioredoxin domain IX87_16055 PF00376 MerR family regulatory protein IX87_16055 PF09278 MerR, DNA binding IX87_16070 PF02803 Thiolase, C-terminal domain IX87_16070 PF00108 Thiolase, N-terminal domain IX87_16075 PF00378 Enoyl-CoA hydratase/isomerase IX87_16075 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX87_16075 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX87_16110 PF02151 UvrB/uvrC motif IX87_16110 PF08459 UvrC Helix-hairpin-helix N-terminal IX87_16110 PF01541 GIY-YIG catalytic domain IX87_16120 PF01066 CDP-alcohol phosphatidyltransferase IX87_16125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX87_16125 PF12833 Helix-turn-helix domain IX87_16125 PF02805 Metal binding domain of Ada IX87_16125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IX87_16150 PF13533 Biotin-lipoyl like IX87_16155 PF03652 Holliday junction resolvase IX87_16160 PF02622 Uncharacterized ACR, COG1678 IX87_16165 PF02463 RecF/RecN/SMC N terminal domain IX87_16175 PF06865 Pyrimidine/purine nucleoside phosphorylase IX87_16180 PF00588 SpoU rRNA Methylase family IX87_16180 PF08032 RNA 2'-O ribose methyltransferase substrate binding IX87_16190 PF01121 Dephospho-CoA kinase IX87_16195 PF01478 Type IV leader peptidase family IX87_16195 PF06750 Bacterial Peptidase A24 N-terminal domain IX87_16200 PF00482 Type II secretion system (T2SS), protein F IX87_16205 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IX87_16205 PF00437 Type II/IV secretion system protein IX87_16210 PF00121 Triosephosphate isomerase IX87_16215 PF03840 Preprotein translocase SecG subunit IX87_16240 PF17384 RimP C-terminal SH3 domain IX87_16240 PF02576 RimP N-terminal domain IX87_16245 PF13184 NusA-like KH domain IX87_16245 PF08529 NusA N-terminal domain IX87_16245 PF00575 S1 RNA binding domain IX87_16250 PF08364 Bacterial translation initiation factor IF-2 associated region IX87_16250 PF11987 Translation-initiation factor 2 IX87_16250 PF04760 Translation initiation factor IF-2, N-terminal region IX87_16250 PF00009 Elongation factor Tu GTP binding domain IX87_16255 PF02033 Ribosome-binding factor A IX87_16265 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IX87_16275 PF00361 Proton-conducting membrane transporter IX87_16280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IX87_16285 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IX87_16285 PF13244 Domain of unknown function (DUF4040) IX87_16285 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IX87_16285 PF00361 Proton-conducting membrane transporter IX87_16300 PF01502 Phosphoribosyl-AMP cyclohydrolase IX87_16305 PF01494 FAD binding domain IX87_16310 PF03109 ABC1 family IX87_16320 PF01209 ubiE/COQ5 methyltransferase family IX87_16330 PF03976 Polyphosphate kinase 2 (PPK2) IX87_16340 PF17946 RecC C-terminal domain IX87_16345 PF12705 PD-(D/E)XK nuclease superfamily IX87_16345 PF13361 UvrD-like helicase C-terminal domain IX87_16345 PF00580 UvrD/REP helicase N-terminal domain IX87_16350 PF13538 UvrD-like helicase C-terminal domain IX87_16360 PF00312 Ribosomal protein S15 IX87_16365 PF03725 3' exoribonuclease family, domain 2 IX87_16365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IX87_16365 PF00575 S1 RNA binding domain IX87_16365 PF01138 3' exoribonuclease family, domain 1 IX87_16365 PF00013 KH domain IX87_16370 PF01544 CorA-like Mg2+ transporter protein IX87_16380 PF01556 DnaJ C terminal domain IX87_16380 PF00226 DnaJ domain IX87_16390 PF01430 Hsp33 protein IX87_16395 PF02254 TrkA-N domain IX87_16395 PF00999 Sodium/hydrogen exchanger family IX87_16400 PF00270 DEAD/DEAH box helicase IX87_16400 PF00271 Helicase conserved C-terminal domain IX87_16400 PF18074 Primosomal protein N C-terminal domain IX87_16400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IX87_16400 PF17764 3′ DNA-binding domain (3′BD) IX87_16405 PF00482 Type II secretion system (T2SS), protein F IX87_16410 PF07963 Prokaryotic N-terminal methylation motif IX87_16410 PF08334 Type II secretion system (T2SS), protein G IX87_16420 PF01588 Putative tRNA binding domain IX87_16425 PF00795 Carbon-nitrogen hydrolase IX87_16430 PF00571 CBS domain IX87_16430 PF03471 Transporter associated domain IX87_16435 PF01206 Sulfurtransferase TusA IX87_16450 PF01177 Asp/Glu/Hydantoin racemase IX87_16460 PF00762 Ferrochelatase IX87_16465 PF00753 Metallo-beta-lactamase superfamily IX87_16470 PF03884 DNA gyrase inhibitor YacG IX87_16490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IX87_16500 PF01197 Ribosomal protein L31 IX87_16505 PF03109 ABC1 family IX87_16510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_16510 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX87_16515 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX87_16515 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_16515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_16520 PF01554 MatE IX87_16530 PF06969 HemN C-terminal domain IX87_16530 PF04055 Radical SAM superfamily IX87_16540 PF03466 LysR substrate binding domain IX87_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_16555 PF00501 AMP-binding enzyme IX87_16555 PF13193 AMP-binding enzyme C-terminal domain IX87_16560 PF12111 Polyribonucleotide phosphorylase C terminal IX87_16560 PF10150 Ribonuclease E/G family IX87_16560 PF00575 S1 RNA binding domain IX87_16565 PF01479 S4 domain IX87_16565 PF00849 RNA pseudouridylate synthase IX87_16570 PF13419 Haloacid dehalogenase-like hydrolase IX87_16575 PF08279 HTH domain IX87_16575 PF13280 WYL domain IX87_16580 PF02798 Glutathione S-transferase, N-terminal domain IX87_16600 PF12706 Beta-lactamase superfamily domain IX87_16605 PF00141 Peroxidase IX87_16610 PF05524 PEP-utilising enzyme, N-terminal IX87_16610 PF02896 PEP-utilising enzyme, TIM barrel domain IX87_16610 PF01590 GAF domain IX87_16610 PF00391 PEP-utilising enzyme, mobile domain IX87_16615 PF00293 NUDIX domain IX87_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_16635 PF03466 LysR substrate binding domain IX87_16645 PF00330 Aconitase family (aconitate hydratase) IX87_16650 PF00694 Aconitase C-terminal domain IX87_16660 PF00180 Isocitrate/isopropylmalate dehydrogenase IX87_16675 PF01176 Translation initiation factor 1A / IF-1 IX87_16685 PF01416 tRNA pseudouridine synthase IX87_16705 PF01118 Semialdehyde dehydrogenase, NAD binding domain IX87_16705 PF02774 Semialdehyde dehydrogenase, dimerisation domain IX87_16715 PF00375 Sodium:dicarboxylate symporter family IX87_16725 PF03279 Bacterial lipid A biosynthesis acyltransferase IX87_16730 PF01810 LysE type translocator IX87_16745 PF08240 Alcohol dehydrogenase GroES-like domain IX87_16745 PF00107 Zinc-binding dehydrogenase IX87_16750 PF01638 HxlR-like helix-turn-helix IX87_16760 PF01396 Topoisomerase DNA binding C4 zinc finger IX87_16760 PF08272 Topoisomerase I zinc-ribbon-like IX87_16760 PF01131 DNA topoisomerase IX87_16760 PF01751 Toprim domain IX87_16775 PF13361 UvrD-like helicase C-terminal domain IX87_16775 PF00580 UvrD/REP helicase N-terminal domain IX87_16780 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IX87_16800 PF00999 Sodium/hydrogen exchanger family IX87_16800 PF02254 TrkA-N domain IX87_16805 PF00471 Ribosomal protein L33 IX87_16810 PF00830 Ribosomal L28 family IX87_16825 PF00905 Penicillin binding protein transpeptidase domain IX87_16845 PF00171 Aldehyde dehydrogenase family IX87_16855 PF00551 Formyl transferase IX87_16855 PF01842 ACT domain IX87_16865 PF01618 MotA/TolQ/ExbB proton channel family IX87_16875 PF01625 Peptide methionine sulfoxide reductase IX87_16885 PF00186 Dihydrofolate reductase IX87_16890 PF00303 Thymidylate synthase IX87_16905 PF01790 Prolipoprotein diacylglyceryl transferase IX87_16925 PF00902 Sec-independent protein translocase protein (TatC) IX87_16930 PF02416 mttA/Hcf106 family IX87_16935 PF02416 mttA/Hcf106 family IX87_16945 PF01725 Ham1 family IX87_16955 PF00561 alpha/beta hydrolase fold IX87_16955 PF07021 Methionine biosynthesis protein MetW IX87_16960 PF00561 alpha/beta hydrolase fold IX87_16965 PF00682 HMGL-like IX87_16965 PF08502 LeuA allosteric (dimerisation) domain IX87_16970 PF18331 PKHD-type hydroxylase C-terminal domain IX87_16970 PF13640 2OG-Fe(II) oxygenase superfamily IX87_16975 PF00593 TonB dependent receptor IX87_16975 PF07715 TonB-dependent Receptor Plug Domain IX87_16980 PF05697 Bacterial trigger factor protein (TF) IX87_16980 PF05698 Bacterial trigger factor protein (TF) C-terminus IX87_16980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX87_16985 PF00574 Clp protease IX87_16990 PF07724 AAA domain (Cdc48 subfamily) IX87_16990 PF10431 C-terminal, D2-small domain, of ClpB protein IX87_16990 PF06689 ClpX C4-type zinc finger IX87_17005 PF05683 Fumarase C-terminus IX87_17005 PF05681 Fumarate hydratase (Fumerase) IX87_17010 PF07085 DRTGG domain IX87_17010 PF01515 Phosphate acetyl/butaryl transferase IX87_17015 PF00871 Acetokinase family IX87_17025 PF00920 Dehydratase family IX87_17030 PF01081 KDPG and KHG aldolase IX87_17035 PF02447 GntP family permease IX87_17040 PF01202 Shikimate kinase IX87_17045 PF00171 Aldehyde dehydrogenase family IX87_17050 PF00171 Aldehyde dehydrogenase family IX87_17055 PF00561 alpha/beta hydrolase fold IX87_17065 PF00933 Glycosyl hydrolase family 3 N terminal domain IX87_17070 PF11818 C-terminal domain of tail specific protease (DUF3340) IX87_17070 PF03572 Peptidase family S41 IX87_17070 PF00595 PDZ domain IX87_17070 PF17804 Tail specific protease N-terminal domain IX87_17075 PF13439 Glycosyltransferase Family 4 IX87_17075 PF00534 Glycosyl transferases group 1 IX87_17080 PF01569 PAP2 superfamily IX87_17085 PF04384 Iron-sulphur cluster assembly IX87_17090 PF00334 Nucleoside diphosphate kinase IX87_17095 PF04055 Radical SAM superfamily IX87_17105 PF13464 Domain of unknown function (DUF4115) IX87_17110 PF04551 GcpE protein IX87_17115 PF03129 Anticodon binding domain IX87_17115 PF13393 Histidyl-tRNA synthetase IX87_17125 PF13360 PQQ-like domain IX87_17130 PF01926 50S ribosome-binding GTPase IX87_17130 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IX87_17140 PF02556 Preprotein translocase subunit SecB IX87_17145 PF00462 Glutaredoxin IX87_17155 PF03193 RsgA GTPase IX87_17160 PF00929 Exonuclease IX87_17175 PF02321 Outer membrane efflux protein IX87_17180 PF12704 MacB-like periplasmic core domain IX87_17180 PF00005 ABC transporter IX87_17180 PF02687 FtsX-like permease family IX87_17185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX87_17200 PF00133 tRNA synthetases class I (I, L, M and V) IX87_17200 PF13603 Leucyl-tRNA synthetase, Domain 2 IX87_17200 PF08264 Anticodon-binding domain of tRNA IX87_17200 PF09334 tRNA synthetases class I (M) IX87_17210 PF00205 Thiamine pyrophosphate enzyme, central domain IX87_17210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX87_17210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX87_17215 PF10369 Small subunit of acetolactate synthase IX87_17220 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IX87_17220 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IX87_17225 PF00563 EAL domain IX87_17225 PF03707 Bacterial signalling protein N terminal repeat IX87_17225 PF00990 Diguanylate cyclase, GGDEF domain IX87_17265 PF16658 Class II release factor RF3, C-terminal domain IX87_17265 PF03144 Elongation factor Tu domain 2 IX87_17265 PF00009 Elongation factor Tu GTP binding domain IX87_17280 PF01026 TatD related DNase IX87_17285 PF00330 Aconitase family (aconitate hydratase) IX87_17285 PF00694 Aconitase C-terminal domain IX87_17295 PF00899 ThiF family IX87_17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_17300 PF03466 LysR substrate binding domain IX87_17310 PF01207 Dihydrouridine synthase (Dus) IX87_17315 PF07690 Major Facilitator Superfamily IX87_17325 PF00892 EamA-like transporter family IX87_17335 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IX87_17340 PF02233 NAD(P) transhydrogenase beta subunit IX87_17345 PF00106 short chain dehydrogenase IX87_17355 PF01261 Xylose isomerase-like TIM barrel IX87_17360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX87_17360 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX87_17365 PF00378 Enoyl-CoA hydratase/isomerase IX87_17370 PF00672 HAMP domain IX87_17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_17370 PF00512 His Kinase A (phospho-acceptor) domain IX87_17370 PF01627 Hpt domain IX87_17370 PF00072 Response regulator receiver domain IX87_17370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IX87_17375 PF00291 Pyridoxal-phosphate dependent enzyme IX87_17385 PF05958 tRNA (Uracil-5-)-methyltransferase IX87_17390 PF02824 TGS domain IX87_17390 PF13291 ACT domain IX87_17390 PF04607 Region found in RelA / SpoT proteins IX87_17400 PF03819 MazG nucleotide pyrophosphohydrolase domain IX87_17410 PF12626 Polymerase A arginine-rich C-terminus IX87_17410 PF01743 Poly A polymerase head domain IX87_17410 PF12627 Probable RNA and SrmB- binding site of polymerase A IX87_17415 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IX87_17420 PF02548 Ketopantoate hydroxymethyltransferase IX87_17425 PF02569 Pantoate-beta-alanine ligase IX87_17430 PF03668 P-loop ATPase protein family IX87_17435 PF00381 PTS HPr component phosphorylation site IX87_17440 PF04751 Protein of unknown function (DUF615) IX87_17445 PF00501 AMP-binding enzyme IX87_17445 PF13193 AMP-binding enzyme C-terminal domain IX87_17450 PF02824 TGS domain IX87_17450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX87_17450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IX87_17450 PF03129 Anticodon binding domain IX87_17455 PF05198 Translation initiation factor IF-3, N-terminal domain IX87_17455 PF00707 Translation initiation factor IF-3, C-terminal domain IX87_17460 PF00043 Glutathione S-transferase, C-terminal domain IX87_17460 PF02798 Glutathione S-transferase, N-terminal domain IX87_17465 PF09335 SNARE associated Golgi protein IX87_17470 PF07690 Major Facilitator Superfamily IX87_17475 PF01632 Ribosomal protein L35 IX87_17480 PF00453 Ribosomal protein L20 IX87_17505 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IX87_17505 PF01409 tRNA synthetases class II core domain (F) IX87_17510 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IX87_17510 PF01588 Putative tRNA binding domain IX87_17510 PF03147 Ferredoxin-fold anticodon binding domain IX87_17510 PF03484 tRNA synthetase B5 domain IX87_17510 PF03483 B3/4 domain IX87_17515 PF00216 Bacterial DNA-binding protein IX87_17525 PF07497 Rho termination factor, RNA-binding domain IX87_17525 PF07498 Rho termination factor, N-terminal domain IX87_17525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX87_17530 PF00085 Thioredoxin IX87_17535 PF02541 Ppx/GppA phosphatase family IX87_17540 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IX87_17545 PF09179 TilS substrate binding domain IX87_17545 PF11734 TilS substrate C-terminal domain IX87_17545 PF01171 PP-loop family IX87_17550 PF14748 Pyrroline-5-carboxylate reductase dimerisation IX87_17550 PF03807 NADP oxidoreductase coenzyme F420-dependent IX87_17555 PF02325 YGGT family IX87_17560 PF00476 DNA polymerase family A IX87_17560 PF01612 3'-5' exonuclease IX87_17560 PF01367 5'-3' exonuclease, C-terminal SAM fold IX87_17560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IX87_17580 PF00437 Type II/IV secretion system protein IX87_17585 PF02566 OsmC-like protein IX87_17590 PF01047 MarR family IX87_17600 PF00795 Carbon-nitrogen hydrolase IX87_17645 PF04552 Sigma-54, DNA binding domain IX87_17645 PF04963 Sigma-54 factor, core binding domain IX87_17645 PF00309 Sigma-54 factor, Activator interacting domain (AID) IX87_17650 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IX87_17655 PF01722 BolA-like protein IX87_17660 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IX87_17665 PF01634 ATP phosphoribosyltransferase IX87_17670 PF00815 Histidinol dehydrogenase IX87_17675 PF00155 Aminotransferase class I and II IX87_17680 PF00425 chorismate binding enzyme IX87_17680 PF04715 Anthranilate synthase component I, N terminal region IX87_17720 PF00293 NUDIX domain IX87_17725 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_17730 PF00814 Glycoprotease family IX87_17735 PF04445 Putative SAM-dependent methyltransferase IX87_17745 PF00756 Putative esterase IX87_17755 PF00834 Ribulose-phosphate 3 epimerase family IX87_17770 PF00394 Multicopper oxidase IX87_17770 PF07732 Multicopper oxidase IX87_17770 PF07731 Multicopper oxidase IX87_17785 PF00893 Small Multidrug Resistance protein IX87_17790 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IX87_17790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX87_17795 PF01960 ArgJ family IX87_17800 PF02445 Quinolinate synthetase A protein IX87_17825 PF00962 Adenosine/AMP deaminase IX87_17830 PF08240 Alcohol dehydrogenase GroES-like domain IX87_17830 PF00107 Zinc-binding dehydrogenase IX87_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_17835 PF03466 LysR substrate binding domain IX87_17840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_17840 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_17840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_17845 PF07690 Major Facilitator Superfamily IX87_17850 PF02515 CoA-transferase family III IX87_17860 PF00890 FAD binding domain IX87_17860 PF14537 Cytochrome c3 IX87_17865 PF03466 LysR substrate binding domain IX87_17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_17875 PF07690 Major Facilitator Superfamily IX87_17880 PF03466 LysR substrate binding domain IX87_17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_17935 PF08267 Cobalamin-independent synthase, N-terminal domain IX87_17935 PF01717 Cobalamin-independent synthase, Catalytic domain IX87_17940 PF01613 Flavin reductase like domain IX87_17955 PF17074 Darcynin, domain of unknown function IX87_17970 PF17074 Darcynin, domain of unknown function IX87_17995 PF02567 Phenazine biosynthesis-like protein IX87_18005 PF00268 Ribonucleotide reductase, small chain IX87_18015 PF00317 Ribonucleotide reductase, all-alpha domain IX87_18015 PF02867 Ribonucleotide reductase, barrel domain IX87_18015 PF03477 ATP cone domain IX87_18025 PF00486 Transcriptional regulatory protein, C terminal IX87_18025 PF00072 Response regulator receiver domain IX87_18030 PF00512 His Kinase A (phospho-acceptor) domain IX87_18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_18030 PF00672 HAMP domain IX87_18075 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IX87_18080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IX87_18085 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IX87_18085 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IX87_18095 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IX87_18095 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IX87_18095 PF10531 SLBB domain IX87_18100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX87_18100 PF00384 Molybdopterin oxidoreductase IX87_18100 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IX87_18105 PF00146 NADH dehydrogenase IX87_18110 PF12838 4Fe-4S dicluster domain IX87_18115 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IX87_18120 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IX87_18125 PF00361 Proton-conducting membrane transporter IX87_18125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IX87_18130 PF00361 Proton-conducting membrane transporter IX87_18135 PF00361 Proton-conducting membrane transporter IX87_18145 PF00313 'Cold-shock' DNA-binding domain IX87_18150 PF03466 LysR substrate binding domain IX87_18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_18155 PF00970 Oxidoreductase FAD-binding domain IX87_18155 PF00175 Oxidoreductase NAD-binding domain IX87_18170 PF05552 Conserved TM helix IX87_18185 PF00291 Pyridoxal-phosphate dependent enzyme IX87_18190 PF13533 Biotin-lipoyl like IX87_18215 PF09334 tRNA synthetases class I (M) IX87_18215 PF01588 Putative tRNA binding domain IX87_18225 PF10609 NUBPL iron-transfer P-loop NTPase IX87_18230 PF01048 Phosphorylase superfamily IX87_18245 PF00692 dUTPase IX87_18275 PF01207 Dihydrouridine synthase (Dus) IX87_18285 PF02978 Signal peptide binding domain IX87_18285 PF00448 SRP54-type protein, GTPase domain IX87_18285 PF02881 SRP54-type protein, helical bundle domain IX87_18290 PF03309 Type III pantothenate kinase IX87_18300 PF01925 Sulfite exporter TauE/SafE IX87_18320 PF02463 RecF/RecN/SMC N terminal domain IX87_18320 PF06470 SMC proteins Flexible Hinge Domain IX87_18330 PF03120 NAD-dependent DNA ligase OB-fold domain IX87_18330 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IX87_18330 PF00533 BRCA1 C Terminus (BRCT) domain IX87_18330 PF12826 Helix-hairpin-helix motif IX87_18330 PF01653 NAD-dependent DNA ligase adenylation domain IX87_18335 PF00210 Ferritin-like domain IX87_18340 PF07690 Major Facilitator Superfamily IX87_18345 PF00982 Glycosyltransferase family 20 IX87_18350 PF02358 Trehalose-phosphatase IX87_18355 PF12697 Alpha/beta hydrolase family IX87_18355 PF08241 Methyltransferase domain IX87_18360 PF00202 Aminotransferase class-III IX87_18360 PF06968 Biotin and Thiamin Synthesis associated domain IX87_18360 PF04055 Radical SAM superfamily IX87_18365 PF00155 Aminotransferase class I and II IX87_18380 PF00849 RNA pseudouridylate synthase IX87_18380 PF01479 S4 domain IX87_18385 PF04079 Segregation and condensation complex subunit ScpB IX87_18390 PF02616 Segregation and condensation protein ScpA IX87_18395 PF01300 Telomere recombination IX87_18400 PF04315 Elongation factor P hydroxylase IX87_18405 PF02620 Large ribosomal RNA subunit accumulation protein YceD IX87_18410 PF01783 Ribosomal L32p protein family IX87_18415 PF00698 Acyl transferase domain IX87_18425 PF00550 Phosphopantetheine attachment site IX87_18430 PF01476 LysM domain IX87_18430 PF04972 BON domain IX87_18435 PF08543 Phosphomethylpyrimidine kinase IX87_18435 PF02581 Thiamine monophosphate synthase IX87_18435 PF03070 TENA/THI-4/PQQC family IX87_18445 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IX87_18460 PF02261 Aspartate decarboxylase IX87_18465 PF01195 Peptidyl-tRNA hydrolase IX87_18470 PF01386 Ribosomal L25p family IX87_18475 PF14572 Phosphoribosyl synthetase-associated domain IX87_18475 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IX87_18500 PF00288 GHMP kinases N terminal domain IX87_18500 PF08544 GHMP kinases C terminal IX87_18505 PF03550 Outer membrane lipoprotein LolB IX87_18515 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IX87_18515 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IX87_18515 PF01488 Shikimate / quinate 5-dehydrogenase IX87_18520 PF01807 CHC2 zinc finger IX87_18520 PF08275 DNA primase catalytic core, N-terminal domain IX87_18520 PF08278 DNA primase DnaG DnaB-binding IX87_18520 PF10410 DnaB-helicase binding domain of primase IX87_18525 PF13525 Outer membrane lipoprotein IX87_18530 PF00849 RNA pseudouridylate synthase IX87_18530 PF01479 S4 domain IX87_18540 PF03358 NADPH-dependent FMN reductase IX87_18545 PF01668 SmpB protein IX87_18620 PF03796 DnaB-like helicase C terminal domain IX87_18620 PF00772 DnaB-like helicase N terminal domain IX87_18755 PF01551 Peptidase family M23 IX87_18755 PF10145 Phage-related minor tail protein IX87_18755 PF01464 Transglycosylase SLT domain IX87_18825 PF01274 Malate synthase IX87_18835 PF02472 Biopolymer transport protein ExbD/TolR IX87_18840 PF02472 Biopolymer transport protein ExbD/TolR IX87_18845 PF01618 MotA/TolQ/ExbB proton channel family IX87_18855 PF07715 TonB-dependent Receptor Plug Domain IX87_18855 PF00593 TonB dependent receptor IX87_18875 PF01432 Peptidase family M3 IX87_18880 PF00528 Binding-protein-dependent transport system inner membrane component IX87_18885 PF00528 Binding-protein-dependent transport system inner membrane component IX87_18890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IX87_18890 PF00005 ABC transporter IX87_18905 PF00459 Inositol monophosphatase family IX87_18915 PF01649 Ribosomal protein S20 IX87_18920 PF13460 NAD(P)H-binding IX87_18925 PF03737 Aldolase/RraA IX87_18945 PF02559 CarD-like/TRCF domain IX87_18945 PF17757 UvrB interaction domain IX87_18945 PF00270 DEAD/DEAH box helicase IX87_18945 PF00271 Helicase conserved C-terminal domain IX87_18945 PF03461 TRCF domain IX87_18955 PF00211 Adenylate and Guanylate cyclase catalytic domain IX87_18960 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_18965 PF00012 Hsp70 protein IX87_18970 PF07743 HSCB C-terminal oligomerisation domain IX87_18970 PF00226 DnaJ domain IX87_18975 PF01521 Iron-sulphur cluster biosynthesis IX87_18980 PF01592 NifU-like N terminal domain IX87_18985 PF00266 Aminotransferase class-V IX87_18990 PF02082 Transcriptional regulator IX87_19010 PF00216 Bacterial DNA-binding protein IX87_19015 PF00639 PPIC-type PPIASE domain IX87_19015 PF09312 SurA N-terminal domain IX87_19020 PF12833 Helix-turn-helix domain IX87_19020 PF12852 Cupin IX87_19025 PF00487 Fatty acid desaturase IX87_19030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_19030 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_19030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_19035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_19035 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_19035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_19040 PF03109 ABC1 family IX87_19050 PF04073 Aminoacyl-tRNA editing domain IX87_19055 PF06276 Ferric iron reductase FhuF-like transporter IX87_19055 PF04183 IucA / IucC family IX87_19060 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IX87_19065 PF07690 Major Facilitator Superfamily IX87_19070 PF06276 Ferric iron reductase FhuF-like transporter IX87_19070 PF04183 IucA / IucC family IX87_19075 PF04183 IucA / IucC family IX87_19075 PF06276 Ferric iron reductase FhuF-like transporter IX87_19085 PF03737 Aldolase/RraA IX87_19090 PF07715 TonB-dependent Receptor Plug Domain IX87_19090 PF00593 TonB dependent receptor IX87_19115 PF13419 Haloacid dehalogenase-like hydrolase IX87_19130 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IX87_19135 PF02277 Phosphoribosyltransferase IX87_19140 PF00300 Histidine phosphatase superfamily (branch 1) IX87_19150 PF02654 Cobalamin-5-phosphate synthase IX87_19155 PF00793 DAHP synthetase I family IX87_19160 PF01925 Sulfite exporter TauE/SafE IX87_19180 PF00593 TonB dependent receptor IX87_19180 PF07715 TonB-dependent Receptor Plug Domain IX87_19185 PF02684 Lipid-A-disaccharide synthetase IX87_19195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX87_19200 PF00005 ABC transporter IX87_19235 PF01230 HIT domain IX87_19275 PF08241 Methyltransferase domain IX87_19280 PF00561 alpha/beta hydrolase fold IX87_19285 PF01053 Cys/Met metabolism PLP-dependent enzyme IX87_19295 PF02575 YbaB/EbfC DNA-binding family IX87_19300 PF13662 Toprim domain IX87_19300 PF02132 RecR protein IX87_19305 PF00570 HRDC domain IX87_19305 PF01612 3'-5' exonuclease IX87_19335 PF05166 YcgL domain IX87_19345 PF00004 ATPase family associated with various cellular activities (AAA) IX87_19345 PF01434 Peptidase family M41 IX87_19345 PF17862 AAA+ lid domain IX87_19355 PF00291 Pyridoxal-phosphate dependent enzyme IX87_19360 PF05175 Methyltransferase small domain IX87_19365 PF01264 Chorismate synthase IX87_19370 PF08448 PAS fold IX87_19370 PF00990 Diguanylate cyclase, GGDEF domain IX87_19385 PF04055 Radical SAM superfamily IX87_19390 PF00676 Dehydrogenase E1 component IX87_19395 PF02780 Transketolase, C-terminal domain IX87_19395 PF02779 Transketolase, pyrimidine binding domain IX87_19400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX87_19400 PF02817 e3 binding domain IX87_19400 PF00364 Biotin-requiring enzyme IX87_19405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX87_19405 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_19410 PF00106 short chain dehydrogenase IX87_19415 PF08240 Alcohol dehydrogenase GroES-like domain IX87_19415 PF00107 Zinc-binding dehydrogenase IX87_19420 PF01062 Bestrophin, RFP-TM, chloride channel IX87_19425 PF00158 Sigma-54 interaction domain IX87_19425 PF00072 Response regulator receiver domain IX87_19425 PF02954 Bacterial regulatory protein, Fis family IX87_19430 PF00753 Metallo-beta-lactamase superfamily IX87_19430 PF04273 Putative phosphatase (DUF442) IX87_19435 PF04273 Putative phosphatase (DUF442) IX87_19435 PF00753 Metallo-beta-lactamase superfamily IX87_19440 PF01925 Sulfite exporter TauE/SafE IX87_19455 PF12833 Helix-turn-helix domain IX87_19455 PF06445 GyrI-like small molecule binding domain IX87_19460 PF01638 HxlR-like helix-turn-helix IX87_19465 PF02525 Flavodoxin-like fold IX87_19490 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IX87_19495 PF00528 Binding-protein-dependent transport system inner membrane component IX87_19500 PF00005 ABC transporter IX87_19515 PF00083 Sugar (and other) transporter IX87_19520 PF07715 TonB-dependent Receptor Plug Domain IX87_19520 PF00593 TonB dependent receptor IX87_19525 PF10415 Fumarase C C-terminus IX87_19525 PF00206 Lyase IX87_19540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_19540 PF03466 LysR substrate binding domain IX87_19545 PF03466 LysR substrate binding domain IX87_19545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_19550 PF02803 Thiolase, C-terminal domain IX87_19550 PF00108 Thiolase, N-terminal domain IX87_19555 PF02667 Short chain fatty acid transporter IX87_19560 PF01144 Coenzyme A transferase IX87_19565 PF01144 Coenzyme A transferase IX87_19570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_19570 PF03466 LysR substrate binding domain IX87_19590 PF00440 Bacterial regulatory proteins, tetR family IX87_19620 PF12833 Helix-turn-helix domain IX87_19620 PF06719 AraC-type transcriptional regulator N-terminus IX87_19625 PF07690 Major Facilitator Superfamily IX87_19630 PF01738 Dienelactone hydrolase family IX87_19645 PF01613 Flavin reductase like domain IX87_19655 PF12833 Helix-turn-helix domain IX87_19655 PF14525 AraC-binding-like domain IX87_19660 PF00175 Oxidoreductase NAD-binding domain IX87_19660 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_19660 PF00970 Oxidoreductase FAD-binding domain IX87_19665 PF00866 Ring hydroxylating beta subunit IX87_19670 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX87_19670 PF00355 Rieske [2Fe-2S] domain IX87_19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_19675 PF03459 TOBE domain IX87_19685 PF00528 Binding-protein-dependent transport system inner membrane component IX87_19690 PF00005 ABC transporter IX87_19690 PF03459 TOBE domain IX87_19695 PF00106 short chain dehydrogenase IX87_19700 PF00550 Phosphopantetheine attachment site IX87_19700 PF00857 Isochorismatase family IX87_19710 PF00149 Calcineurin-like phosphoesterase IX87_19715 PF02384 N-6 DNA Methylase IX87_19725 PF01420 Type I restriction modification DNA specificity domain IX87_19740 PF02503 Polyphosphate kinase middle domain IX87_19740 PF17941 Polyphosphate kinase C-terminal domain 1 IX87_19740 PF13090 Polyphosphate kinase C-terminal domain 2 IX87_19740 PF13089 Polyphosphate kinase N-terminal domain IX87_19745 PF12706 Beta-lactamase superfamily domain IX87_19750 PF03070 TENA/THI-4/PQQC family IX87_19755 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IX87_19760 PF13186 Iron-sulfur cluster-binding domain IX87_19760 PF04055 Radical SAM superfamily IX87_19765 PF01244 Membrane dipeptidase (Peptidase family M19) IX87_19785 PF13091 PLD-like domain IX87_19810 PF00199 Catalase IX87_19820 PF00107 Zinc-binding dehydrogenase IX87_19820 PF08240 Alcohol dehydrogenase GroES-like domain IX87_19915 PF00248 Aldo/keto reductase family IX87_19920 PF00293 NUDIX domain IX87_19925 PF00933 Glycosyl hydrolase family 3 N terminal domain IX87_19930 PF05199 GMC oxidoreductase IX87_19930 PF00732 GMC oxidoreductase IX87_19940 PF00356 Bacterial regulatory proteins, lacI family IX87_19950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX87_19950 PF00205 Thiamine pyrophosphate enzyme, central domain IX87_19950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX87_19960 PF02264 LamB porin IX87_19965 PF05690 Thiazole biosynthesis protein ThiG IX87_19975 PF00459 Inositol monophosphatase family IX87_19980 PF07690 Major Facilitator Superfamily IX87_19985 PF05199 GMC oxidoreductase IX87_19985 PF00732 GMC oxidoreductase IX87_19990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX87_19990 PF00205 Thiamine pyrophosphate enzyme, central domain IX87_19990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX87_20005 PF04172 LrgB-like family IX87_20010 PF00356 Bacterial regulatory proteins, lacI family IX87_20015 PF01738 Dienelactone hydrolase family IX87_20020 PF00892 EamA-like transporter family IX87_20025 PF05199 GMC oxidoreductase IX87_20025 PF00732 GMC oxidoreductase IX87_20030 PF07690 Major Facilitator Superfamily IX87_20050 PF02264 LamB porin IX87_20070 PF03447 Homoserine dehydrogenase, NAD binding domain IX87_20070 PF01958 Domain of unknown function DUF108 IX87_20075 PF00561 alpha/beta hydrolase fold IX87_20085 PF05199 GMC oxidoreductase IX87_20085 PF00732 GMC oxidoreductase IX87_20090 PF05544 Proline racemase IX87_20120 PF01266 FAD dependent oxidoreductase IX87_20135 PF01593 Flavin containing amine oxidoreductase IX87_20140 PF00743 Flavin-binding monooxygenase-like IX87_20145 PF12146 Serine aminopeptidase, S33 IX87_20155 PF00873 AcrB/AcrD/AcrF family IX87_20160 PF00529 HlyD membrane-fusion protein of T1SS IX87_20160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX87_20165 PF00486 Transcriptional regulatory protein, C terminal IX87_20165 PF00072 Response regulator receiver domain IX87_20170 PF00512 His Kinase A (phospho-acceptor) domain IX87_20170 PF00672 HAMP domain IX87_20170 PF16527 Two-component sensor protein CpxA, periplasmic domain IX87_20170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_20180 PF12833 Helix-turn-helix domain IX87_20180 PF02311 AraC-like ligand binding domain IX87_20190 PF12146 Serine aminopeptidase, S33 IX87_20200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_20200 PF03466 LysR substrate binding domain IX87_20205 PF12146 Serine aminopeptidase, S33 IX87_20280 PF02824 TGS domain IX87_20280 PF13291 ACT domain IX87_20280 PF04607 Region found in RelA / SpoT proteins IX87_20290 PF01975 Survival protein SurE IX87_20315 PF07690 Major Facilitator Superfamily IX87_20320 PF13533 Biotin-lipoyl like IX87_20340 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IX87_20345 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IX87_20345 PF14572 Phosphoribosyl synthetase-associated domain IX87_20365 PF00005 ABC transporter IX87_20380 PF00107 Zinc-binding dehydrogenase IX87_20380 PF08240 Alcohol dehydrogenase GroES-like domain IX87_20390 PF06719 AraC-type transcriptional regulator N-terminus IX87_20390 PF12833 Helix-turn-helix domain IX87_20395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX87_20395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX87_20400 PF07690 Major Facilitator Superfamily IX87_20405 PF01370 NAD dependent epimerase/dehydratase family IX87_20410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_20410 PF03466 LysR substrate binding domain IX87_20420 PF00920 Dehydratase family IX87_20425 PF00171 Aldehyde dehydrogenase family IX87_20430 PF01047 MarR family IX87_20435 PF01613 Flavin reductase like domain IX87_20440 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX87_20450 PF07690 Major Facilitator Superfamily IX87_20450 PF00083 Sugar (and other) transporter IX87_20455 PF00171 Aldehyde dehydrogenase family IX87_20460 PF03328 HpcH/HpaI aldolase/citrate lyase family IX87_20465 PF01557 Fumarylacetoacetate (FAA) hydrolase family IX87_20470 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase IX87_20475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IX87_20480 PF00171 Aldehyde dehydrogenase family IX87_20485 PF01557 Fumarylacetoacetate (FAA) hydrolase family IX87_20490 PF01557 Fumarylacetoacetate (FAA) hydrolase family IX87_20500 PF07690 Major Facilitator Superfamily IX87_20505 PF00579 tRNA synthetases class I (W and Y) IX87_20560 PF06628 Catalase-related immune-responsive IX87_20560 PF00199 Catalase IX87_20565 PF00561 alpha/beta hydrolase fold IX87_20575 PF00171 Aldehyde dehydrogenase family IX87_20580 PF08240 Alcohol dehydrogenase GroES-like domain IX87_20580 PF00107 Zinc-binding dehydrogenase IX87_20585 PF00474 Sodium:solute symporter family IX87_20590 PF04341 Protein of unknown function, DUF485 IX87_20610 PF13193 AMP-binding enzyme C-terminal domain IX87_20610 PF00501 AMP-binding enzyme IX87_20615 PF02954 Bacterial regulatory protein, Fis family IX87_20615 PF00158 Sigma-54 interaction domain IX87_20615 PF06506 Propionate catabolism activator IX87_20635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_20635 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_20635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_20650 PF01636 Phosphotransferase enzyme family IX87_20655 PF00171 Aldehyde dehydrogenase family IX87_20665 PF07690 Major Facilitator Superfamily IX87_20670 PF00920 Dehydratase family IX87_20675 PF07729 FCD domain IX87_20675 PF00392 Bacterial regulatory proteins, gntR family IX87_20685 PF03466 LysR substrate binding domain IX87_20685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_20690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IX87_20690 PF13378 Enolase C-terminal domain-like IX87_20695 PF02426 Muconolactone delta-isomerase IX87_20700 PF04444 Catechol dioxygenase N terminus IX87_20700 PF00775 Dioxygenase IX87_20705 PF01144 Coenzyme A transferase IX87_20710 PF01144 Coenzyme A transferase IX87_20715 PF00108 Thiolase, N-terminal domain IX87_20715 PF02803 Thiolase, C-terminal domain IX87_20720 PF12146 Serine aminopeptidase, S33 IX87_20740 PF02311 AraC-like ligand binding domain IX87_20740 PF12833 Helix-turn-helix domain IX87_20745 PF01613 Flavin reductase like domain IX87_20750 PF00111 2Fe-2S iron-sulfur cluster binding domain IX87_20750 PF00175 Oxidoreductase NAD-binding domain IX87_20765 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX87_20765 PF00355 Rieske [2Fe-2S] domain IX87_20780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX87_20785 PF01425 Amidase IX87_20800 PF07690 Major Facilitator Superfamily IX87_20825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX87_20825 PF02770 Acyl-CoA dehydrogenase, middle domain IX87_20825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX87_20830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_20830 PF03466 LysR substrate binding domain IX87_20835 PF01614 Bacterial transcriptional regulator IX87_20835 PF09339 IclR helix-turn-helix domain IX87_20840 PF00753 Metallo-beta-lactamase superfamily IX87_20850 PF04143 Sulphur transport IX87_20860 PF13360 PQQ-like domain IX87_20860 PF01011 PQQ enzyme repeat IX87_20865 PF04966 Carbohydrate-selective porin, OprB family IX87_20870 PF05048 Periplasmic copper-binding protein (NosD) IX87_20875 PF01487 Type I 3-dehydroquinase IX87_20880 PF00775 Dioxygenase IX87_20885 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IX87_20885 PF00775 Dioxygenase IX87_20890 PF02627 Carboxymuconolactone decarboxylase family IX87_20895 PF07690 Major Facilitator Superfamily IX87_20900 PF00561 alpha/beta hydrolase fold IX87_20905 PF00206 Lyase IX87_20905 PF10397 Adenylosuccinate lyase C-terminus IX87_20910 PF00108 Thiolase, N-terminal domain IX87_20910 PF02803 Thiolase, C-terminal domain IX87_20915 PF01144 Coenzyme A transferase IX87_20920 PF01144 Coenzyme A transferase IX87_20925 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IX87_20930 PF04977 Septum formation initiator IX87_20935 PF04239 Protein of unknown function (DUF421) IX87_20940 PF03952 Enolase, N-terminal domain IX87_20940 PF00113 Enolase, C-terminal TIM barrel domain IX87_20945 PF00793 DAHP synthetase I family IX87_20950 PF06418 CTP synthase N-terminus IX87_20950 PF00117 Glutamine amidotransferase class-I IX87_20980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX87_20980 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_20995 PF00793 DAHP synthetase I family IX87_21000 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IX87_21005 PF17871 AAA lid domain IX87_21005 PF07724 AAA domain (Cdc48 subfamily) IX87_21005 PF10431 C-terminal, D2-small domain, of ClpB protein IX87_21005 PF02861 Clp amino terminal domain, pathogenicity island component IX87_21005 PF00004 ATPase family associated with various cellular activities (AAA) IX87_21010 PF02617 ATP-dependent Clp protease adaptor protein ClpS IX87_21020 PF01118 Semialdehyde dehydrogenase, NAD binding domain IX87_21020 PF02774 Semialdehyde dehydrogenase, dimerisation domain IX87_21035 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IX87_21040 PF00585 C-terminal regulatory domain of Threonine dehydratase IX87_21040 PF00291 Pyridoxal-phosphate dependent enzyme IX87_21045 PF02254 TrkA-N domain IX87_21045 PF02080 TrkA-C domain IX87_21050 PF02386 Cation transport protein IX87_21055 PF02253 Phospholipase A1 IX87_21060 PF05193 Peptidase M16 inactive domain IX87_21060 PF08367 Peptidase M16C associated IX87_21060 PF00675 Insulinase (Peptidase family M16) IX87_21065 PF07715 TonB-dependent Receptor Plug Domain IX87_21065 PF00593 TonB dependent receptor IX87_21070 PF00294 pfkB family carbohydrate kinase IX87_21080 PF07290 Protein of unknown function (DUF1449) IX87_21100 PF01654 Cytochrome bd terminal oxidase subunit I IX87_21105 PF02322 Cytochrome bd terminal oxidase subunit II IX87_21110 PF08173 Membrane bound YbgT-like protein IX87_21125 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IX87_21135 PF00448 SRP54-type protein, GTPase domain IX87_21135 PF02881 SRP54-type protein, helical bundle domain IX87_21160 PF00478 IMP dehydrogenase / GMP reductase domain IX87_21160 PF00571 CBS domain IX87_21165 PF00202 Aminotransferase class-III IX87_21170 PF00462 Glutaredoxin IX87_21180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX87_21180 PF03466 LysR substrate binding domain IX87_21185 PF00557 Metallopeptidase family M24 IX87_21190 PF05525 Branched-chain amino acid transport protein IX87_21215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IX87_21215 PF02896 PEP-utilising enzyme, TIM barrel domain IX87_21215 PF05524 PEP-utilising enzyme, N-terminal IX87_21215 PF00381 PTS HPr component phosphorylation site IX87_21215 PF00391 PEP-utilising enzyme, mobile domain IX87_21220 PF00294 pfkB family carbohydrate kinase IX87_21225 PF02378 Phosphotransferase system, EIIC IX87_21225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IX87_21290 PF00216 Bacterial DNA-binding protein IX87_21340 PF11985 Protein of unknown function (DUF3486) IX87_21345 PF03237 Terminase-like family IX87_21360 PF02086 D12 class N6 adenine-specific DNA methyltransferase IX87_21365 PF06074 Protein of unknown function (DUF935) IX87_21370 PF04233 Phage Mu protein F like protein IX87_21475 PF04865 Baseplate J-like protein IX87_21515 PF03707 Bacterial signalling protein N terminal repeat IX87_21515 PF00563 EAL domain IX87_21515 PF00990 Diguanylate cyclase, GGDEF domain IX87_21525 PF07995 Glucose / Sorbosone dehydrogenase IX87_21530 PF02586 SOS response associated peptidase (SRAP) IX87_21535 PF00916 Sulfate permease family IX87_21535 PF01740 STAS domain IX87_21540 PF05922 Peptidase inhibitor I9 IX87_21540 PF00082 Subtilase family IX87_21560 PF00324 Amino acid permease IX87_21565 PF00266 Aminotransferase class-V IX87_21570 PF01037 Lrp/AsnC ligand binding domain IX87_21595 PF13419 Haloacid dehalogenase-like hydrolase IX87_21600 PF01479 S4 domain IX87_21605 PF00154 recA bacterial DNA recombination protein IX87_21610 PF02631 RecX family IX87_21620 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_21620 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IX87_21625 PF07977 FabA-like domain IX87_21630 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IX87_21630 PF00132 Bacterial transferase hexapeptide (six repeats) IX87_21640 PF07244 Surface antigen variable number repeat IX87_21640 PF01103 Surface antigen IX87_21645 PF17820 PDZ domain IX87_21645 PF02163 Peptidase family M50 IX87_21645 PF13180 PDZ domain IX87_21650 PF13288 DXP reductoisomerase C-terminal domain IX87_21650 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IX87_21650 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IX87_21660 PF01255 Putative undecaprenyl diphosphate synthase IX87_21665 PF01765 Ribosome recycling factor IX87_21670 PF00696 Amino acid kinase family IX87_21675 PF18693 TRAM domain IX87_21675 PF04055 Radical SAM superfamily IX87_21675 PF00919 Uncharacterized protein family UPF0004 IX87_21680 PF00989 PAS fold IX87_21680 PF00512 His Kinase A (phospho-acceptor) domain IX87_21680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX87_21685 PF00158 Sigma-54 interaction domain IX87_21685 PF02954 Bacterial regulatory protein, Fis family IX87_21685 PF00072 Response regulator receiver domain IX87_21690 PF00440 Bacterial regulatory proteins, tetR family IX87_21695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IX87_21695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IX87_21705 PF02542 YgbB family IX87_21715 PF01266 FAD dependent oxidoreductase IX87_21745 PF00206 Lyase IX87_21745 PF10415 Fumarase C C-terminus IX87_21750 PF16363 GDP-mannose 4,6 dehydratase IX87_21755 PF02635 DsrE/DsrF-like family IX87_21775 PF00892 EamA-like transporter family IX87_21780 PF00392 Bacterial regulatory proteins, gntR family IX87_21780 PF00155 Aminotransferase class I and II IX87_21785 PF01638 HxlR-like helix-turn-helix IX87_21790 PF03454 MoeA C-terminal region (domain IV) IX87_21790 PF00994 Probable molybdopterin binding domain IX87_21790 PF03453 MoeA N-terminal region (domain I and II) IX87_21795 PF00994 Probable molybdopterin binding domain IX87_21795 PF01967 MoaC family IX87_21800 PF02391 MoaE protein IX87_21810 PF06463 Molybdenum Cofactor Synthesis C IX87_21810 PF04055 Radical SAM superfamily IX87_21815 PF01568 Molydopterin dinucleotide binding domain IX87_21815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX87_21815 PF00384 Molybdopterin oxidoreductase IX87_21820 PF12804 MobA-like NTP transferase domain IX87_21825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX87_21825 PF04324 BFD-like [2Fe-2S] binding domain IX87_21825 PF01568 Molydopterin dinucleotide binding domain IX87_21825 PF00384 Molybdopterin oxidoreductase IX87_21830 PF18267 Rubredoxin NAD+ reductase C-terminal domain IX87_21830 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_21830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX87_21830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX87_21830 PF04324 BFD-like [2Fe-2S] binding domain IX87_21835 PF13806 Rieske-like [2Fe-2S] domain IX87_21835 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX87_21835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX87_21835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX87_21835 PF04324 BFD-like [2Fe-2S] binding domain IX87_21835 PF18267 Rubredoxin NAD+ reductase C-terminal domain IX87_21860 PF00905 Penicillin binding protein transpeptidase domain IX87_21885 PF00005 ABC transporter IX87_21890 PF13438 Domain of unknown function (DUF4113) IX87_21890 PF00817 impB/mucB/samB family IX87_21890 PF11799 impB/mucB/samB family C-terminal domain IX87_21895 PF01220 Dehydroquinase class II IX87_21900 PF00364 Biotin-requiring enzyme IX87_21905 PF00289 Biotin carboxylase, N-terminal domain IX87_21905 PF02785 Biotin carboxylase C-terminal domain IX87_21905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX87_21915 PF12832 MFS_1 like family IX87_21950 PF00717 Peptidase S24-like IX87_21955 PF13438 Domain of unknown function (DUF4113) IX87_21955 PF00817 impB/mucB/samB family IX87_21955 PF11799 impB/mucB/samB family C-terminal domain IX87_21960 PF13340 Putative transposase of IS4/5 family (DUF4096) IX87_21965 PF08240 Alcohol dehydrogenase GroES-like domain IX87_21965 PF13823 Alcohol dehydrogenase GroES-associated IX87_21965 PF00107 Zinc-binding dehydrogenase IX87_21990 PF00182 Chitinase class I IX87_22020 PF01464 Transglycosylase SLT domain IX87_22020 PF10145 Phage-related minor tail protein IX87_22020 PF01551 Peptidase family M23 IX87_22030 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system