IX87_00220 SM00530 Helix-turn-helix XRE-family like proteins IX87_00235 SM00530 Helix-turn-helix XRE-family like proteins IX87_00345 SM00382 ATPases associated with a variety of cellular activities IX87_00345 SM00464 Found in ATP-dependent protease La (LON) IX87_00365 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX87_00375 SM00478 endonuclease III IX87_00425 SM00988 UreE urease accessory protein, N-terminal domain IX87_00480 SM01091 Transporter associated domain IX87_00600 SM00382 ATPases associated with a variety of cellular activities IX87_00610 SM00947 Carbonic anhydrase IX87_00675 SM01018 B12 binding domain IX87_00680 SM00861 Transketolase, pyrimidine binding domain IX87_00695 SM00822 IX87_00695 IX87_00720 SM00342 helix_turn_helix, arabinose operon control protein IX87_00790 SM00822 IX87_00790 IX87_00810 SM00346 helix_turn_helix isocitrate lyase regulation IX87_00850 SM01322 IX87_00850 IX87_00975 SM00965 Secretin and TonB N terminus short domain IX87_00995 SM01130 IX87_00995 IX87_01010 SM00487 DEAD-like helicases superfamily IX87_01165 SM00487 DEAD-like helicases superfamily IX87_01410 SM00530 Helix-turn-helix XRE-family like proteins IX87_01440 SM00382 ATPases associated with a variety of cellular activities IX87_01540 SM00479 IX87_01540 IX87_01620 SM01004 Delta-aminolevulinic acid dehydratase IX87_01670 SM00382 ATPases associated with a variety of cellular activities IX87_01740 SM00563 Phosphate acyltransferases IX87_01775 SM00843 IX87_01775 IX87_01830 SM00838 Elongation factor G C-terminus IX87_01830 SM00889 Elongation factor G, domain IV IX87_01850 SM00825 Beta-ketoacyl synthase IX87_01910 SM01329 IX87_01910 IX87_01975 SM00232 JAB/MPN domain IX87_02085 SM00507 HNH nucleases IX87_02145 SM00382 ATPases associated with a variety of cellular activities IX87_02165 SM00530 Helix-turn-helix XRE-family like proteins IX87_02200 SM01040 BRO family, N-terminal domain IX87_02220 SM00342 helix_turn_helix, arabinose operon control protein IX87_02245 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family IX87_02255 SM00411 bacterial (prokaryotic) histone like domain IX87_02260 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_02285 SM00986 Uracil DNA glycosylase superfamily IX87_02285 SM00987 UreE urease accessory protein, C-terminal domain IX87_02345 SM00382 ATPases associated with a variety of cellular activities IX87_02360 SM00470 ParB-like nuclease domain IX87_02420 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. IX87_02430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX87_02460 SM00382 ATPases associated with a variety of cellular activities IX87_02470 SM00342 helix_turn_helix, arabinose operon control protein IX87_02490 SM00344 helix_turn_helix ASNC type IX87_02525 SM00867 YceI-like domain IX87_02535 SM00861 Transketolase, pyrimidine binding domain IX87_02570 SM00530 Helix-turn-helix XRE-family like proteins IX87_02595 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_02595 SM00876 Biotin and Thiamin Synthesis associated domain IX87_02705 SM01236 IX87_02705 IX87_02725 SM00563 Phosphate acyltransferases IX87_02735 SM00344 helix_turn_helix ASNC type IX87_02745 SM00382 ATPases associated with a variety of cellular activities IX87_02760 SM00062 Bacterial periplasmic substrate-binding proteins IX87_02805 SM00382 ATPases associated with a variety of cellular activities IX87_02805 SM00930 IX87_02805 IX87_02825 SM00100 Cyclic nucleotide-monophosphate binding domain IX87_02825 SM00419 helix_turn_helix, cAMP Regulatory protein IX87_02860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX87_02875 SM00342 helix_turn_helix, arabinose operon control protein IX87_02900 SM00870 IX87_02900 IX87_02905 SM00481 DNA polymerase alpha chain like domain IX87_02955 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX87_02990 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_02990 SM00895 IX87_02990 IX87_03020 SM00062 Bacterial periplasmic substrate-binding proteins IX87_03075 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_03095 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IX87_03155 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_03190 SM00822 IX87_03190 IX87_03215 SM00450 Rhodanese Homology Domain IX87_03245 SM00062 Bacterial periplasmic substrate-binding proteins IX87_03250 SM00062 Bacterial periplasmic substrate-binding proteins IX87_03255 SM00382 ATPases associated with a variety of cellular activities IX87_03275 SM00421 helix_turn_helix, Lux Regulon IX87_03275 SM00448 cheY-homologous receiver domain IX87_03280 SM00387 Histidine kinase-like ATPases IX87_03280 SM00388 His Kinase A (phosphoacceptor) domain IX87_03280 SM00448 cheY-homologous receiver domain IX87_03290 SM00344 helix_turn_helix ASNC type IX87_03310 SM00384 DNA binding domain with preference for A/T rich regions IX87_03325 SM01060 IX87_03325 IX87_03330 SM01236 IX87_03330 IX87_03425 SM00878 Biotin carboxylase C-terminal domain IX87_03470 SM00882 Coenzyme A transferase IX87_03475 SM00882 Coenzyme A transferase IX87_03510 SM00346 helix_turn_helix isocitrate lyase regulation IX87_03515 SM01236 IX87_03515 IX87_03545 SM00346 helix_turn_helix isocitrate lyase regulation IX87_03585 SM00382 ATPases associated with a variety of cellular activities IX87_03595 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_03595 SM00866 IX87_03595 IX87_03605 SM00346 helix_turn_helix isocitrate lyase regulation IX87_03655 SM00903 Flavin reductase like domain IX87_03670 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_03670 SM00895 IX87_03670 IX87_03685 SM01060 IX87_03685 IX87_03800 SM00342 helix_turn_helix, arabinose operon control protein IX87_03825 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_03825 SM00895 IX87_03825 IX87_03835 SM01130 IX87_03835 IX87_03850 SM00422 helix_turn_helix, mercury resistance IX87_03885 SM00248 ankyrin repeats IX87_03920 SM00382 ATPases associated with a variety of cellular activities IX87_03920 SM01086 C-terminal, D2-small domain, of ClpB protein IX87_03995 SM00382 ATPases associated with a variety of cellular activities IX87_04040 SM00796 Allophanate hydrolase subunit 1 IX87_04040 SM00797 Allophanate hydrolase subunit 2 IX87_04040 SM00878 Biotin carboxylase C-terminal domain IX87_04055 SM00829 Enoylreductase IX87_04075 SM00671 Sel1-like repeats. IX87_04095 SM00878 Biotin carboxylase C-terminal domain IX87_04100 SM00796 Allophanate hydrolase subunit 1 IX87_04100 SM00797 Allophanate hydrolase subunit 2 IX87_04205 SM00422 helix_turn_helix, mercury resistance IX87_04210 SM00972 Spore Coat Protein U domain IX87_04230 SM00342 helix_turn_helix, arabinose operon control protein IX87_04275 SM00052 Putative diguanylate phosphodiesterase IX87_04285 SM00344 helix_turn_helix ASNC type IX87_04295 SM00533 DNA-binding domain of DNA mismatch repair MUTS family IX87_04295 SM00534 ATPase domain of DNA mismatch repair MUTS family IX87_04340 SM00382 ATPases associated with a variety of cellular activities IX87_04350 SM00382 ATPases associated with a variety of cellular activities IX87_04370 SM00116 Domain in cystathionine beta-synthase and other proteins. IX87_04375 SM00840 IX87_04375 IX87_04440 SM00357 Cold shock protein domain IX87_04465 SM00530 Helix-turn-helix XRE-family like proteins IX87_04515 SM00422 helix_turn_helix, mercury resistance IX87_04530 SM00382 ATPases associated with a variety of cellular activities IX87_04530 SM00989 IX87_04530 IX87_04615 SM00382 ATPases associated with a variety of cellular activities IX87_04615 SM00487 DEAD-like helicases superfamily IX87_04615 SM00490 helicase superfamily c-terminal domain IX87_04615 SM00847 Helicase associated domain (HA2) Add an annotation IX87_04695 SM00981 IX87_04695 IX87_04710 SM00382 ATPases associated with a variety of cellular activities IX87_04710 SM01086 C-terminal, D2-small domain, of ClpB protein IX87_04730 SM00100 Cyclic nucleotide-monophosphate binding domain IX87_04730 SM00419 helix_turn_helix, cAMP Regulatory protein IX87_04750 SM00788 Adenylosuccinate synthetase IX87_04760 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX87_04765 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IX87_05005 SM00507 HNH nucleases IX87_05050 SM00530 Helix-turn-helix XRE-family like proteins IX87_05210 SM00342 helix_turn_helix, arabinose operon control protein IX87_05275 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_05275 SM00895 IX87_05275 IX87_05280 SM00347 helix_turn_helix multiple antibiotic resistance protein IX87_05340 SM01130 IX87_05340 IX87_05350 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_05350 SM00895 IX87_05350 IX87_05375 SM00858 IX87_05375 IX87_05400 SM00342 helix_turn_helix, arabinose operon control protein IX87_05435 SM00344 helix_turn_helix ASNC type IX87_05450 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_05450 SM00895 IX87_05450 IX87_05630 SM00479 IX87_05630 IX87_05650 SM00382 ATPases associated with a variety of cellular activities IX87_05670 SM00257 Lysin motif IX87_05675 SM00479 IX87_05675 IX87_05730 SM00422 helix_turn_helix, mercury resistance IX87_05750 SM01011 Aminopeptidase P, N-terminal domain IX87_06065 SM00382 ATPases associated with a variety of cellular activities IX87_06090 SM00530 Helix-turn-helix XRE-family like proteins IX87_06160 SM01236 IX87_06160 IX87_06205 SM00226 Low molecular weight phosphatase family IX87_06235 SM00382 ATPases associated with a variety of cellular activities IX87_06260 SM00822 IX87_06260 IX87_06290 SM00344 helix_turn_helix ASNC type IX87_06305 SM00831 Cation transporter/ATPase, N-terminus IX87_06330 SM00382 ATPases associated with a variety of cellular activities IX87_06420 SM00344 helix_turn_helix ASNC type IX87_06425 SM00830 Chorismate mutase type II IX87_06470 SM00382 ATPases associated with a variety of cellular activities IX87_06485 SM00862 Transcriptional regulatory protein, C terminal IX87_06555 SM00853 MutL C terminal dimerisation domain IX87_06555 SM01340 IX87_06555 IX87_06580 SM00363 S4 RNA-binding domain IX87_06670 SM01230 IX87_06670 IX87_06675 SM00448 cheY-homologous receiver domain IX87_06675 SM00862 Transcriptional regulatory protein, C terminal IX87_06680 SM00387 Histidine kinase-like ATPases IX87_06680 SM00388 His Kinase A (phosphoacceptor) domain IX87_06705 SM00905 Dihydroneopterin aldolase IX87_06720 SM00903 Flavin reductase like domain IX87_06735 SM00822 IX87_06735 IX87_06740 SM00342 helix_turn_helix, arabinose operon control protein IX87_06750 SM00937 IX87_06750 IX87_06865 SM01005 Alanine racemase, C-terminal domain IX87_06875 SM00460 Transglutaminase/protease-like homologues IX87_06900 SM01228 IX87_06900 IX87_06925 SM00798 AICARFT/IMPCHase bienzyme IX87_06925 SM00851 MGS-like domain IX87_06930 SM01209 IX87_06930 IX87_06930 SM01210 IX87_06930 IX87_06940 SM00382 ATPases associated with a variety of cellular activities IX87_06940 SM00930 IX87_06940 IX87_06950 SM00849 Metallo-beta-lactamase superfamily IX87_07065 SM00972 Spore Coat Protein U domain IX87_07090 SM00972 Spore Coat Protein U domain IX87_07130 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_07130 SM00895 IX87_07130 IX87_07150 SM00342 helix_turn_helix, arabinose operon control protein IX87_07165 SM01034 Sensors of blue-light using FAD IX87_07315 SM00220 Serine/Threonine protein kinases, catalytic domain IX87_07395 SM00855 Phosphoglycerate mutase family IX87_07415 SM00487 DEAD-like helicases superfamily IX87_07415 SM00490 helicase superfamily c-terminal domain IX87_07420 SM00357 Cold shock protein domain IX87_07485 SM00830 Chorismate mutase type II IX87_07540 SM00387 Histidine kinase-like ATPases IX87_07540 SM00388 His Kinase A (phosphoacceptor) domain IX87_07545 SM00448 cheY-homologous receiver domain IX87_07545 SM00862 Transcriptional regulatory protein, C terminal IX87_07555 SM00382 ATPases associated with a variety of cellular activities IX87_07580 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_07600 SM00382 ATPases associated with a variety of cellular activities IX87_07615 SM00062 Bacterial periplasmic substrate-binding proteins IX87_07655 SM00479 IX87_07655 IX87_07845 SM00530 Helix-turn-helix XRE-family like proteins IX87_07925 SM00382 ATPases associated with a variety of cellular activities IX87_07975 SM00342 helix_turn_helix, arabinose operon control protein IX87_08025 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_08045 SM00996 S-adenosyl-L-homocysteine hydrolase IX87_08045 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IX87_08065 SM00919 Malic enzyme, NAD binding domain IX87_08065 SM01274 IX87_08065 IX87_08075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX87_08130 SM01230 IX87_08130 IX87_08200 SM01252 IX87_08200 IX87_08405 SM00382 ATPases associated with a variety of cellular activities IX87_08440 SM00530 Helix-turn-helix XRE-family like proteins IX87_08550 SM00463 Small MutS-related domain IX87_08560 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IX87_08565 SM01092 CO dehydrogenase flavoprotein C-terminal domain IX87_08630 SM00382 ATPases associated with a variety of cellular activities IX87_08635 SM00382 ATPases associated with a variety of cellular activities IX87_08680 SM00382 ATPases associated with a variety of cellular activities IX87_08770 SM00841 Elongation factor P, C-terminal IX87_08770 SM01185 IX87_08770 IX87_08785 SM00052 Putative diguanylate phosphodiesterase IX87_08820 SM00257 Lysin motif IX87_08840 SM00936 Penicillin-binding protein 5, C-terminal domain IX87_08885 SM00382 ATPases associated with a variety of cellular activities IX87_08915 SM00344 helix_turn_helix ASNC type IX87_08970 SM00487 DEAD-like helicases superfamily IX87_08970 SM00490 helicase superfamily c-terminal domain IX87_09000 SM00880 IX87_09000 IX87_09000 SM01118 IX87_09000 IX87_09050 SM01329 IX87_09050 IX87_09150 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IX87_09170 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX87_09195 SM00487 DEAD-like helicases superfamily IX87_09195 SM00490 helicase superfamily c-terminal domain IX87_09205 SM00267 diguanylate cyclase IX87_09270 SM00358 Double-stranded RNA binding motif IX87_09270 SM00535 Ribonuclease III family IX87_09285 SM00838 Elongation factor G C-terminus IX87_09295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX87_09345 SM00382 ATPases associated with a variety of cellular activities IX87_09420 SM01211 IX87_09420 IX87_09425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX87_09430 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX87_09435 SM00382 ATPases associated with a variety of cellular activities IX87_09560 SM00849 Metallo-beta-lactamase superfamily IX87_09565 SM00382 ATPases associated with a variety of cellular activities IX87_09635 SM00434 DNA Topoisomerase IV IX87_09640 SM00893 Electron transfer flavoprotein domain IX87_09645 SM00893 Electron transfer flavoprotein domain IX87_09680 SM00382 ATPases associated with a variety of cellular activities IX87_09685 SM00978 IX87_09685 IX87_09850 SM00849 Metallo-beta-lactamase superfamily IX87_09865 SM00883 Chaperonin 10 Kd subunit IX87_09880 SM00046 Diacylglycerol kinase catalytic domain (presumed) IX87_09960 SM00382 ATPases associated with a variety of cellular activities IX87_09970 SM01103 IX87_09970 IX87_09985 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain IX87_09990 SM00851 MGS-like domain IX87_09990 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IX87_10020 SM00854 Bacterial capsule synthesis protein PGA_cap IX87_10080 SM00881 CoA binding domain IX87_10100 SM00861 Transketolase, pyrimidine binding domain IX87_10135 SM00450 Rhodanese Homology Domain IX87_10250 SM00014 Acid phosphatase homologues IX87_10285 SM00822 IX87_10285 IX87_10330 SM00387 Histidine kinase-like ATPases IX87_10330 SM00388 His Kinase A (phosphoacceptor) domain IX87_10335 SM00448 cheY-homologous receiver domain IX87_10335 SM00862 Transcriptional regulatory protein, C terminal IX87_10360 SM00563 Phosphate acyltransferases IX87_10375 SM00244 prohibitin homologues IX87_10590 SM00382 ATPases associated with a variety of cellular activities IX87_10615 SM00530 Helix-turn-helix XRE-family like proteins IX87_10670 SM00829 Enoylreductase IX87_10675 SM00342 helix_turn_helix, arabinose operon control protein IX87_10695 SM00342 helix_turn_helix, arabinose operon control protein IX87_10735 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_10770 SM00845 GatB domain IX87_10935 SM00073 Histidine Phosphotransfer domain IX87_10935 SM00260 Two component signalling adaptor domain IX87_10935 SM00387 Histidine kinase-like ATPases IX87_10935 SM00448 cheY-homologous receiver domain IX87_10935 SM01231 IX87_10935 IX87_10940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IX87_10945 SM00260 Two component signalling adaptor domain IX87_10950 SM00448 cheY-homologous receiver domain IX87_10955 SM00448 cheY-homologous receiver domain IX87_11010 SM00671 Sel1-like repeats. IX87_11035 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain IX87_11035 SM01232 IX87_11035 IX87_11055 SM00838 Elongation factor G C-terminus IX87_11120 SM00564 beta-propeller repeat IX87_11135 SM00342 helix_turn_helix, arabinose operon control protein IX87_11200 SM00957 SecA DEAD-like domain IX87_11200 SM00958 SecA preprotein cross-linking domain IX87_11210 SM00849 Metallo-beta-lactamase superfamily IX87_11240 SM00342 helix_turn_helix, arabinose operon control protein IX87_11300 SM00448 cheY-homologous receiver domain IX87_11300 SM00862 Transcriptional regulatory protein, C terminal IX87_11305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX87_11305 SM00387 Histidine kinase-like ATPases IX87_11305 SM00388 His Kinase A (phosphoacceptor) domain IX87_11440 SM00387 Histidine kinase-like ATPases IX87_11440 SM00388 His Kinase A (phosphoacceptor) domain IX87_11505 SM01323 IX87_11505 IX87_11535 SM00481 DNA polymerase alpha chain like domain IX87_11560 SM00450 Rhodanese Homology Domain IX87_11635 SM00267 diguanylate cyclase IX87_11650 SM00155 Phospholipase D. Active site motifs. IX87_11655 SM00563 Phosphate acyltransferases IX87_11685 SM00650 Ribosomal RNA adenine dimethylases IX87_11720 SM00878 Biotin carboxylase C-terminal domain IX87_11810 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IX87_11840 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_11945 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_11945 SM00955 IX87_11945 IX87_12010 SM00662 RNA polymerases D IX87_12015 SM00363 S4 RNA-binding domain IX87_12015 SM01390 IX87_12015 IX87_12080 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IX87_12085 SM01374 IX87_12085 IX87_12105 SM00322 K homology RNA-binding domain IX87_12120 SM01382 IX87_12120 IX87_12120 SM01383 IX87_12120 IX87_12140 SM01403 IX87_12140 IX87_12190 SM00563 Phosphate acyltransferases IX87_12205 SM00487 DEAD-like helicases superfamily IX87_12205 SM00490 helicase superfamily c-terminal domain IX87_12250 SM00382 ATPases associated with a variety of cellular activities IX87_12260 SM00487 DEAD-like helicases superfamily IX87_12260 SM00490 helicase superfamily c-terminal domain IX87_12270 SM00861 Transketolase, pyrimidine binding domain IX87_12320 SM00116 Domain in cystathionine beta-synthase and other proteins. IX87_12430 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX87_12640 SM00072 Guanylate kinase homologues. IX87_12645 SM01409 IX87_12645 IX87_12650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX87_12650 SM00954 Region found in RelA / SpoT proteins IX87_12790 SM00965 Secretin and TonB N terminus short domain IX87_12810 SM00842 Cell division protein FtsA IX87_12980 SM00671 Sel1-like repeats. IX87_12985 SM00382 ATPases associated with a variety of cellular activities IX87_13000 SM00947 Carbonic anhydrase IX87_13005 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_13005 SM00732 Likely ribonuclease with RNase H fold. IX87_13010 SM00448 cheY-homologous receiver domain IX87_13010 SM00862 Transcriptional regulatory protein, C terminal IX87_13015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX87_13015 SM00387 Histidine kinase-like ATPases IX87_13015 SM00388 His Kinase A (phosphoacceptor) domain IX87_13060 SM00474 3'-5' exonuclease IX87_13070 SM00530 Helix-turn-helix XRE-family like proteins IX87_13090 SM00357 Cold shock protein domain IX87_13110 SM00342 helix_turn_helix, arabinose operon control protein IX87_13130 SM00477 DNA/RNA non-specific endonuclease IX87_13130 SM00892 DNA/RNA non-specific endonuclease IX87_13275 SM00671 Sel1-like repeats. IX87_13285 SM00342 helix_turn_helix, arabinose operon control protein IX87_13350 SM00342 helix_turn_helix, arabinose operon control protein IX87_13415 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_13425 SM00530 Helix-turn-helix XRE-family like proteins IX87_13470 SM00829 Enoylreductase IX87_13485 SM00267 diguanylate cyclase IX87_13525 SM00387 Histidine kinase-like ATPases IX87_13525 SM00388 His Kinase A (phosphoacceptor) domain IX87_13525 SM00448 cheY-homologous receiver domain IX87_13535 SM00421 helix_turn_helix, Lux Regulon IX87_13535 SM00448 cheY-homologous receiver domain IX87_13550 SM00344 helix_turn_helix ASNC type IX87_13590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX87_13595 SM00937 IX87_13595 IX87_13620 SM00116 Domain in cystathionine beta-synthase and other proteins. IX87_13620 SM01240 IX87_13620 IX87_13630 SM00849 Metallo-beta-lactamase superfamily IX87_13685 SM00864 Tubulin/FtsZ family, GTPase domain IX87_13685 SM00865 Tubulin/FtsZ family, C-terminal domain IX87_13690 SM00842 Cell division protein FtsA IX87_13745 SM00382 ATPases associated with a variety of cellular activities IX87_13780 SM00267 diguanylate cyclase IX87_13845 SM00387 Histidine kinase-like ATPases IX87_13845 SM00433 TopoisomeraseII IX87_13940 SM00448 cheY-homologous receiver domain IX87_13940 SM00862 Transcriptional regulatory protein, C terminal IX87_13945 SM00387 Histidine kinase-like ATPases IX87_13945 SM00388 His Kinase A (phosphoacceptor) domain IX87_13960 SM00450 Rhodanese Homology Domain IX87_14075 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_14075 SM00866 IX87_14075 IX87_14085 SM00833 Cobalamin synthesis protein cobW C-terminal domain IX87_14115 SM00346 helix_turn_helix isocitrate lyase regulation IX87_14145 SM01130 IX87_14145 IX87_14170 SM00382 ATPases associated with a variety of cellular activities IX87_14200 SM00478 endonuclease III IX87_14200 SM00525 IX87_14200 IX87_14220 SM00829 Enoylreductase IX87_14225 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_14265 SM00271 DnaJ molecular chaperone homology domain IX87_14415 SM00382 ATPases associated with a variety of cellular activities IX87_14430 SM00387 Histidine kinase-like ATPases IX87_14430 SM00433 TopoisomeraseII IX87_14440 SM00480 DNA polymerase III beta subunit IX87_14445 SM00382 ATPases associated with a variety of cellular activities IX87_14445 SM00760 Bacterial dnaA protein helix-turn-helix domain IX87_14460 SM01234 IX87_14460 IX87_14540 SM00014 Acid phosphatase homologues IX87_14565 SM01001 AIR carboxylase IX87_14585 SM00235 Zinc-dependent metalloprotease IX87_14590 SM00235 Zinc-dependent metalloprotease IX87_14615 SM00849 Metallo-beta-lactamase superfamily IX87_14690 SM00904 Riboflavin kinase IX87_14710 SM00382 ATPases associated with a variety of cellular activities IX87_14725 SM00062 Bacterial periplasmic substrate-binding proteins IX87_14730 SM00062 Bacterial periplasmic substrate-binding proteins IX87_14815 SM00644 IX87_14815 IX87_14840 SM00226 Low molecular weight phosphatase family IX87_14850 SM00984 UDP binding domain IX87_14930 SM00984 UDP binding domain IX87_14955 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_14955 SM00895 IX87_14955 IX87_14975 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_14975 SM00895 IX87_14975 IX87_15020 SM00825 Beta-ketoacyl synthase IX87_15060 SM00344 helix_turn_helix ASNC type IX87_15070 SM01005 Alanine racemase, C-terminal domain IX87_15140 SM00421 helix_turn_helix, Lux Regulon IX87_15165 SM00823 Phosphopantetheine attachment site IX87_15165 SM01294 IX87_15165 IX87_15170 SM00823 Phosphopantetheine attachment site IX87_15170 SM00824 Thioesterase IX87_15285 SM00836 DALR anticodon binding domain IX87_15285 SM01016 Arginyl tRNA synthetase N terminal dom IX87_15290 SM00919 Malic enzyme, NAD binding domain IX87_15290 SM01274 IX87_15290 IX87_15310 SM00382 ATPases associated with a variety of cellular activities IX87_15360 SM00382 ATPases associated with a variety of cellular activities IX87_15380 SM00342 helix_turn_helix, arabinose operon control protein IX87_15495 SM00422 helix_turn_helix, mercury resistance IX87_15505 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_15525 SM00641 Glycosyl hydrolases family 25 IX87_15550 SM01091 Transporter associated domain IX87_15570 SM00434 DNA Topoisomerase IV IX87_15615 SM01130 IX87_15615 IX87_15620 SM01007 Class II Aldolase and Adducin N-terminal domain IX87_15625 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_15630 SM00382 ATPases associated with a variety of cellular activities IX87_15640 SM00938 Nitrogen regulatory protein P-II IX87_15705 SM00245 tail specific protease IX87_15730 SM00387 Histidine kinase-like ATPases IX87_15730 SM00388 His Kinase A (phosphoacceptor) domain IX87_15735 SM00421 helix_turn_helix, Lux Regulon IX87_15735 SM00448 cheY-homologous receiver domain IX87_15765 SM00899 IX87_15765 IX87_15855 SM00448 cheY-homologous receiver domain IX87_15855 SM00850 LytTr DNA-binding domain IX87_15885 SM00528 Domain in histone-like proteins of HNS family IX87_15895 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX87_15905 SM00240 Forkhead associated domain IX87_15960 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IX87_15960 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IX87_15965 SM00649 Ribosomal protein L11/L12 IX87_15990 SM00663 RNA polymerase I subunit A N-terminus IX87_16030 SM00387 Histidine kinase-like ATPases IX87_16055 SM00422 helix_turn_helix, mercury resistance IX87_16110 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX87_16110 SM00465 GIY-YIG type nucleases (URI domain) IX87_16125 SM00342 helix_turn_helix, arabinose operon control protein IX87_16135 SM00346 helix_turn_helix isocitrate lyase regulation IX87_16155 SM00732 Likely ribonuclease with RNase H fold. IX87_16170 SM00028 Tetratricopeptide repeats IX87_16180 SM00967 RNA 2'-O ribose methyltransferase substrate binding IX87_16245 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_16350 SM00382 ATPases associated with a variety of cellular activities IX87_16360 SM01387 IX87_16360 IX87_16365 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_16365 SM00322 K homology RNA-binding domain IX87_16380 SM00271 DnaJ molecular chaperone homology domain IX87_16400 SM00487 DEAD-like helicases superfamily IX87_16400 SM00490 helicase superfamily c-terminal domain IX87_16430 SM00116 Domain in cystathionine beta-synthase and other proteins. IX87_16430 SM01091 Transporter associated domain IX87_16465 SM00849 Metallo-beta-lactamase superfamily IX87_16530 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_16560 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_16565 SM00363 S4 RNA-binding domain IX87_16610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IX87_16660 SM01329 IX87_16660 IX87_16675 SM00316 Ribosomal protein S1-like RNA-binding domain IX87_16680 SM00342 helix_turn_helix, arabinose operon control protein IX87_16690 SM00870 IX87_16690 IX87_16705 SM00859 Semialdehyde dehydrogenase, NAD binding domain IX87_16735 SM00382 ATPases associated with a variety of cellular activities IX87_16745 SM00829 Enoylreductase IX87_16760 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain IX87_16760 SM00437 Bacterial DNA topoisomerase I DNA-binding domain IX87_16760 SM00493 IX87_16760 IX87_16780 SM00360 RNA recognition motif IX87_16950 SM00671 Sel1-like repeats. IX87_16965 SM00917 LeuA allosteric (dimerisation) domain IX87_16970 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IX87_16990 SM00382 ATPases associated with a variety of cellular activities IX87_16990 SM00994 ClpX C4-type zinc finger IX87_16990 SM01086 C-terminal, D2-small domain, of ClpB protein IX87_17070 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX87_17070 SM00245 tail specific protease IX87_17080 SM00014 Acid phosphatase homologues IX87_17090 SM00562 IX87_17090 IX87_17100 SM00028 Tetratricopeptide repeats IX87_17125 SM00564 beta-propeller repeat IX87_17150 SM00450 Rhodanese Homology Domain IX87_17160 SM00479 IX87_17160 IX87_17180 SM00382 ATPases associated with a variety of cellular activities IX87_17225 SM00052 Putative diguanylate phosphodiesterase IX87_17225 SM00267 diguanylate cyclase IX87_17260 SM01236 IX87_17260 IX87_17370 SM00073 Histidine Phosphotransfer domain IX87_17370 SM00387 Histidine kinase-like ATPases IX87_17370 SM00388 His Kinase A (phosphoacceptor) domain IX87_17370 SM00448 cheY-homologous receiver domain IX87_17390 SM00954 Region found in RelA / SpoT proteins IX87_17405 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX87_17450 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IX87_17510 SM00873 B3/4 domain IX87_17510 SM00874 tRNA synthetase B5 domain IX87_17510 SM00896 Ferredoxin-fold anticodon binding domain IX87_17515 SM00411 bacterial (prokaryotic) histone like domain IX87_17525 SM00357 Cold shock protein domain IX87_17525 SM00382 ATPases associated with a variety of cellular activities IX87_17525 SM00959 Rho termination factor, N-terminal domain IX87_17545 SM00977 TilS substrate C-terminal domain IX87_17560 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs IX87_17560 SM00474 3'-5' exonuclease IX87_17560 SM00475 5'-3' exonuclease IX87_17560 SM00482 DNA polymerase A domain IX87_17580 SM00382 ATPases associated with a variety of cellular activities IX87_17590 SM00347 helix_turn_helix multiple antibiotic resistance protein IX87_17610 SM00331 Sigma factor PP2C-like phosphatases IX87_17940 SM00903 Flavin reductase like domain IX87_18025 SM00448 cheY-homologous receiver domain IX87_18025 SM00862 Transcriptional regulatory protein, C terminal IX87_18030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX87_18030 SM00387 Histidine kinase-like ATPases IX87_18030 SM00388 His Kinase A (phosphoacceptor) domain IX87_18095 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IX87_18100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX87_18100 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IX87_18145 SM00357 Cold shock protein domain IX87_18285 SM00382 ATPases associated with a variety of cellular activities IX87_18285 SM00962 SRP54-type protein, GTPase domain IX87_18285 SM00963 SRP54-type protein, helical bundle domain IX87_18315 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_18325 SM00771 ZipA, C-terminal domain (FtsZ-binding) IX87_18330 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX87_18330 SM00292 breast cancer carboxy-terminal domain IX87_18330 SM00532 Ligase N family IX87_18380 SM00363 S4 RNA-binding domain IX87_18415 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IX87_18420 SM00822 IX87_18420 IX87_18430 SM00257 Lysin motif IX87_18475 SM01400 IX87_18475 IX87_18510 SM00028 Tetratricopeptide repeats IX87_18520 SM00400 zinc finger IX87_18520 SM00493 IX87_18520 IX87_18530 SM00363 S4 RNA-binding domain IX87_18600 SM00530 Helix-turn-helix XRE-family like proteins IX87_18620 SM00382 ATPases associated with a variety of cellular activities IX87_18665 SM00507 HNH nucleases IX87_18785 SM00232 JAB/MPN domain IX87_18890 SM00382 ATPases associated with a variety of cellular activities IX87_18945 SM00487 DEAD-like helicases superfamily IX87_18945 SM00490 helicase superfamily c-terminal domain IX87_18945 SM00982 IX87_18945 IX87_18945 SM01058 CarD-like/TRCF domain IX87_18955 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain IX87_18970 SM00271 DnaJ molecular chaperone homology domain IX87_19010 SM00411 bacterial (prokaryotic) histone like domain IX87_19020 SM00342 helix_turn_helix, arabinose operon control protein IX87_19110 SM01006 Siderophore biosynthesis protein domain IX87_19140 SM00855 Phosphoglycerate mutase family IX87_19200 SM00382 ATPases associated with a variety of cellular activities IX87_19240 SM01324 IX87_19240 IX87_19300 SM00493 IX87_19300 IX87_19305 SM00341 Helicase and RNase D C-terminal IX87_19305 SM00474 3'-5' exonuclease IX87_19345 SM00382 ATPases associated with a variety of cellular activities IX87_19370 SM00267 diguanylate cyclase IX87_19385 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_19395 SM00861 Transketolase, pyrimidine binding domain IX87_19415 SM00829 Enoylreductase IX87_19425 SM00382 ATPases associated with a variety of cellular activities IX87_19430 SM00849 Metallo-beta-lactamase superfamily IX87_19455 SM00342 helix_turn_helix, arabinose operon control protein IX87_19475 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_19475 SM00866 IX87_19475 IX87_19500 SM00382 ATPases associated with a variety of cellular activities IX87_19505 SM00567 E-Z type HEAT repeats IX87_19560 SM00882 Coenzyme A transferase IX87_19565 SM00882 Coenzyme A transferase IX87_19620 SM00342 helix_turn_helix, arabinose operon control protein IX87_19645 SM00903 Flavin reductase like domain IX87_19655 SM00342 helix_turn_helix, arabinose operon control protein IX87_19690 SM00382 ATPases associated with a variety of cellular activities IX87_19730 SM00487 DEAD-like helicases superfamily IX87_19760 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_19785 SM00155 Phospholipase D. Active site motifs. IX87_19820 SM00829 Enoylreductase IX87_19850 SM00530 Helix-turn-helix XRE-family like proteins IX87_19900 SM00530 Helix-turn-helix XRE-family like proteins IX87_19940 SM00354 helix_turn _helix lactose operon repressor IX87_20010 SM00354 helix_turn _helix lactose operon repressor IX87_20165 SM00448 cheY-homologous receiver domain IX87_20165 SM00862 Transcriptional regulatory protein, C terminal IX87_20170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX87_20170 SM00387 Histidine kinase-like ATPases IX87_20170 SM00388 His Kinase A (phosphoacceptor) domain IX87_20180 SM00342 helix_turn_helix, arabinose operon control protein IX87_20195 SM00822 IX87_20195 IX87_20345 SM01400 IX87_20345 IX87_20355 SM00342 helix_turn_helix, arabinose operon control protein IX87_20365 SM00382 ATPases associated with a variety of cellular activities IX87_20380 SM00829 Enoylreductase IX87_20390 SM00342 helix_turn_helix, arabinose operon control protein IX87_20430 SM00347 helix_turn_helix multiple antibiotic resistance protein IX87_20435 SM00903 Flavin reductase like domain IX87_20495 SM00342 helix_turn_helix, arabinose operon control protein IX87_20560 SM01060 IX87_20560 IX87_20580 SM00829 Enoylreductase IX87_20615 SM00091 PAS domain IX87_20615 SM00382 ATPases associated with a variety of cellular activities IX87_20640 SM00855 Phosphoglycerate mutase family IX87_20675 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_20675 SM00895 IX87_20675 IX87_20690 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IX87_20705 SM00882 Coenzyme A transferase IX87_20710 SM00882 Coenzyme A transferase IX87_20740 SM00342 helix_turn_helix, arabinose operon control protein IX87_20745 SM00903 Flavin reductase like domain IX87_20790 SM00347 helix_turn_helix multiple antibiotic resistance protein IX87_20815 SM00855 Phosphoglycerate mutase family IX87_20835 SM00346 helix_turn_helix isocitrate lyase regulation IX87_20840 SM00849 Metallo-beta-lactamase superfamily IX87_20860 SM00564 beta-propeller repeat IX87_20870 SM00710 Parallel beta-helix repeats IX87_20905 SM00998 Adenylosuccinate lyase C-terminus IX87_20915 SM00882 Coenzyme A transferase IX87_20920 SM00882 Coenzyme A transferase IX87_20940 SM01192 IX87_20940 IX87_20940 SM01193 IX87_20940 IX87_21005 SM00382 ATPases associated with a variety of cellular activities IX87_21005 SM01086 C-terminal, D2-small domain, of ClpB protein IX87_21020 SM00859 Semialdehyde dehydrogenase, NAD binding domain IX87_21060 SM01264 IX87_21060 IX87_21135 SM00382 ATPases associated with a variety of cellular activities IX87_21135 SM00962 SRP54-type protein, GTPase domain IX87_21135 SM00963 SRP54-type protein, helical bundle domain IX87_21160 SM00116 Domain in cystathionine beta-synthase and other proteins. IX87_21290 SM00411 bacterial (prokaryotic) histone like domain IX87_21515 SM00052 Putative diguanylate phosphodiesterase IX87_21515 SM00091 PAS domain IX87_21515 SM00267 diguanylate cyclase IX87_21570 SM00344 helix_turn_helix ASNC type IX87_21600 SM00363 S4 RNA-binding domain IX87_21605 SM00382 ATPases associated with a variety of cellular activities IX87_21635 SM00935 Outer membrane protein (OmpH-like) IX87_21645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX87_21675 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_21680 SM00091 PAS domain IX87_21680 SM00387 Histidine kinase-like ATPases IX87_21680 SM00388 His Kinase A (phosphoacceptor) domain IX87_21685 SM00382 ATPases associated with a variety of cellular activities IX87_21685 SM00448 cheY-homologous receiver domain IX87_21780 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX87_21790 SM00852 Probable molybdopterin binding domain IX87_21795 SM00852 Probable molybdopterin binding domain IX87_21810 SM00729 Elongator protein 3, MiaB family, Radical SAM IX87_21815 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX87_21825 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX87_21905 SM00878 Biotin carboxylase C-terminal domain