locus-tag class description IX88_00035 PF01196 Ribosomal protein L17 IX88_00040 PF01000 RNA polymerase Rpb3/RpoA insert domain IX88_00040 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IX88_00040 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IX88_00045 PF00163 Ribosomal protein S4/S9 N-terminal domain IX88_00045 PF01479 S4 domain IX88_00050 PF00411 Ribosomal protein S11 IX88_00055 PF00416 Ribosomal protein S13/S18 IX88_00060 PF00444 Ribosomal protein L36 IX88_00065 PF00344 SecY translocase IX88_00070 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IX88_00075 PF00327 Ribosomal protein L30p/L7e IX88_00080 PF00333 Ribosomal protein S5, N-terminal domain IX88_00080 PF03719 Ribosomal protein S5, C-terminal domain IX88_00085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IX88_00090 PF00347 Ribosomal protein L6 IX88_00095 PF00410 Ribosomal protein S8 IX88_00100 PF00253 Ribosomal protein S14p/S29e IX88_00105 PF00281 Ribosomal protein L5 IX88_00105 PF00673 ribosomal L5P family C-terminus IX88_00110 PF00467 KOW motif IX88_00110 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IX88_00115 PF00238 Ribosomal protein L14p/L23e IX88_00120 PF00366 Ribosomal protein S17 IX88_00125 PF00831 Ribosomal L29 protein IX88_00130 PF00252 Ribosomal protein L16p/L10e IX88_00135 PF00189 Ribosomal protein S3, C-terminal domain IX88_00135 PF07650 KH domain IX88_00140 PF00237 Ribosomal protein L22p/L17e IX88_00145 PF00203 Ribosomal protein S19 IX88_00150 PF00181 Ribosomal Proteins L2, RNA binding domain IX88_00150 PF03947 Ribosomal Proteins L2, C-terminal domain IX88_00155 PF00276 Ribosomal protein L23 IX88_00160 PF00573 Ribosomal protein L4/L1 family IX88_00165 PF00297 Ribosomal protein L3 IX88_00170 PF00338 Ribosomal protein S10p/S20e IX88_00175 PF00117 Glutamine amidotransferase class-I IX88_00180 PF01053 Cys/Met metabolism PLP-dependent enzyme IX88_00185 PF05872 Bacterial protein of unknown function (DUF853) IX88_00190 PF00175 Oxidoreductase NAD-binding domain IX88_00190 PF00970 Oxidoreductase FAD-binding domain IX88_00190 PF00042 Globin IX88_00195 PF02082 Transcriptional regulator IX88_00200 PF01926 50S ribosome-binding GTPase IX88_00210 PF00375 Sodium:dicarboxylate symporter family IX88_00220 PF01553 Acyltransferase IX88_00235 PF00271 Helicase conserved C-terminal domain IX88_00235 PF00270 DEAD/DEAH box helicase IX88_00235 PF17191 RecG wedge domain IX88_00240 PF00156 Phosphoribosyl transferase domain IX88_00245 PF00293 NUDIX domain IX88_00250 PF03641 Possible lysine decarboxylase IX88_00255 PF01544 CorA-like Mg2+ transporter protein IX88_00265 PF05494 MlaC protein IX88_00275 PF02405 Permease MlaE IX88_00280 PF00005 ABC transporter IX88_00290 PF00271 Helicase conserved C-terminal domain IX88_00290 PF12343 Cold shock protein DEAD box A IX88_00290 PF03880 DbpA RNA binding domain IX88_00290 PF00270 DEAD/DEAH box helicase IX88_00295 PF00459 Inositol monophosphatase family IX88_00300 PF02779 Transketolase, pyrimidine binding domain IX88_00300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IX88_00300 PF02780 Transketolase, C-terminal domain IX88_00305 PF00925 GTP cyclohydrolase II IX88_00310 PF01218 Coproporphyrinogen III oxidase IX88_00315 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IX88_00315 PF01488 Shikimate / quinate 5-dehydrogenase IX88_00315 PF08501 Shikimate dehydrogenase substrate binding domain IX88_00325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_00325 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_00325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_00325 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_00335 PF04024 PspC domain IX88_00340 PF00571 CBS domain IX88_00355 PF07690 Major Facilitator Superfamily IX88_00365 PF02091 Glycyl-tRNA synthetase alpha subunit IX88_00370 PF02092 Glycyl-tRNA synthetase beta subunit IX88_00370 PF05746 DALR anticodon binding domain IX88_00380 PF00892 EamA-like transporter family IX88_00385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_00385 PF03466 LysR substrate binding domain IX88_00415 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IX88_00420 PF04996 Succinylarginine dihydrolase IX88_00425 PF00171 Aldehyde dehydrogenase family IX88_00430 PF04958 Arginine N-succinyltransferase beta subunit IX88_00435 PF00202 Aminotransferase class-III IX88_00440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IX88_00440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_00445 PF00324 Amino acid permease IX88_00455 PF08241 Methyltransferase domain IX88_00475 PF13614 AAA domain IX88_00480 PF01594 AI-2E family transporter IX88_00485 PF00080 Copper/zinc superoxide dismutase (SODC) IX88_00490 PF12805 FUSC-like inner membrane protein yccS IX88_00495 PF07690 Major Facilitator Superfamily IX88_00505 PF02525 Flavodoxin-like fold IX88_00510 PF03992 Antibiotic biosynthesis monooxygenase IX88_00520 PF02913 FAD linked oxidases, C-terminal domain IX88_00520 PF01565 FAD binding domain IX88_00525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX88_00525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX88_00530 PF00892 EamA-like transporter family IX88_00535 PF00892 EamA-like transporter family IX88_00545 PF01925 Sulfite exporter TauE/SafE IX88_00550 PF01509 TruB family pseudouridylate synthase (N terminal domain) IX88_00550 PF09157 Pseudouridine synthase II TruB, C-terminal IX88_00550 PF16198 tRNA pseudouridylate synthase B C-terminal domain IX88_00555 PF03280 Proteobacterial lipase chaperone protein IX88_00560 PF00561 alpha/beta hydrolase fold IX88_00565 PF01245 Ribosomal protein L19 IX88_00570 PF01746 tRNA (Guanine-1)-methyltransferase IX88_00575 PF01782 RimM N-terminal domain IX88_00575 PF05239 PRC-barrel domain IX88_00580 PF00886 Ribosomal protein S16 IX88_00590 PF07963 Prokaryotic N-terminal methylation motif IX88_00590 PF08334 Type II secretion system (T2SS), protein G IX88_00620 PF02401 LytB protein IX88_00625 PF00625 Guanylate kinase IX88_00630 PF01192 RNA polymerase Rpb6 IX88_00635 PF13291 ACT domain IX88_00635 PF04607 Region found in RelA / SpoT proteins IX88_00635 PF02824 TGS domain IX88_00640 PF01042 Endoribonuclease L-PSP IX88_00645 PF04324 BFD-like [2Fe-2S] binding domain IX88_00650 PF00210 Ferritin-like domain IX88_00655 PF04932 O-Antigen ligase IX88_00655 PF15864 Protein glycosylation ligase IX88_00655 PF11846 Virulence factor membrane-bound polymerase, C-terminal IX88_00665 PF07963 Prokaryotic N-terminal methylation motif IX88_00665 PF00114 Pilin (bacterial filament) IX88_00675 PF04536 TPM domain IX88_00680 PF04011 LemA family IX88_00690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IX88_00690 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_00695 PF01645 Conserved region in glutamate synthase IX88_00695 PF04898 Glutamate synthase central domain IX88_00695 PF00310 Glutamine amidotransferases class-II IX88_00695 PF01493 GXGXG motif IX88_00705 PF01761 3-dehydroquinate synthase IX88_00710 PF01202 Shikimate kinase IX88_00715 PF07660 Secretin and TonB N terminus short domain IX88_00715 PF00263 Bacterial type II and III secretion system protein IX88_00715 PF11741 AMIN domain IX88_00715 PF03958 Bacterial type II/III secretion system short domain IX88_00740 PF17092 Penicillin-binding protein OB-like domain IX88_00740 PF00912 Transglycosylase IX88_00740 PF00905 Penicillin binding protein transpeptidase domain IX88_00745 PF13847 Methyltransferase domain IX88_00755 PF00953 Glycosyl transferase family 4 IX88_00760 PF02875 Mur ligase family, glutamate ligase domain IX88_00760 PF08245 Mur ligase middle domain IX88_00760 PF01225 Mur ligase family, catalytic domain IX88_00765 PF01225 Mur ligase family, catalytic domain IX88_00765 PF02875 Mur ligase family, glutamate ligase domain IX88_00765 PF08245 Mur ligase middle domain IX88_00770 PF00905 Penicillin binding protein transpeptidase domain IX88_00770 PF03717 Penicillin-binding Protein dimerisation domain IX88_00780 PF01795 MraW methylase family IX88_00795 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX88_00815 PF00324 Amino acid permease IX88_00845 PF01545 Cation efflux family IX88_00850 PF00873 AcrB/AcrD/AcrF family IX88_00855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_00855 PF00529 HlyD membrane-fusion protein of T1SS IX88_00885 PF12848 ABC transporter IX88_00885 PF00005 ABC transporter IX88_00890 PF01053 Cys/Met metabolism PLP-dependent enzyme IX88_00895 PF00106 short chain dehydrogenase IX88_00900 PF00916 Sulfate permease family IX88_00900 PF01740 STAS domain IX88_00905 PF16921 Tex protein YqgF-like domain IX88_00905 PF00575 S1 RNA binding domain IX88_00905 PF17674 HHH domain IX88_00905 PF09371 Tex-like protein N-terminal domain IX88_00910 PF00072 Response regulator receiver domain IX88_00910 PF00486 Transcriptional regulatory protein, C terminal IX88_00915 PF00512 His Kinase A (phospho-acceptor) domain IX88_00915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_00915 PF00672 HAMP domain IX88_00920 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IX88_00920 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IX88_00925 PF00583 Acetyltransferase (GNAT) family IX88_00945 PF00475 Imidazoleglycerol-phosphate dehydratase IX88_00950 PF00117 Glutamine amidotransferase class-I IX88_00965 PF00977 Histidine biosynthesis protein IX88_00970 PF00664 ABC transporter transmembrane region IX88_00970 PF00005 ABC transporter IX88_00995 PF01636 Phosphotransferase enzyme family IX88_01000 PF00977 Histidine biosynthesis protein IX88_01015 PF00230 Major intrinsic protein IX88_01040 PF02705 K+ potassium transporter IX88_01060 PF02525 Flavodoxin-like fold IX88_01065 PF01638 HxlR-like helix-turn-helix IX88_01100 PF02311 AraC-like ligand binding domain IX88_01100 PF12833 Helix-turn-helix domain IX88_01105 PF00248 Aldo/keto reductase family IX88_01125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_01125 PF03466 LysR substrate binding domain IX88_01130 PF07690 Major Facilitator Superfamily IX88_01160 PF01593 Flavin containing amine oxidoreductase IX88_01165 PF02678 Pirin IX88_01165 PF05726 Pirin C-terminal cupin domain IX88_01170 PF00857 Isochorismatase family IX88_01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_01180 PF00171 Aldehyde dehydrogenase family IX88_01185 PF00202 Aminotransferase class-III IX88_01190 PF00392 Bacterial regulatory proteins, gntR family IX88_01190 PF00155 Aminotransferase class I and II IX88_01195 PF00324 Amino acid permease IX88_01205 PF03591 AzlC protein IX88_01215 PF00436 Single-strand binding protein family IX88_01220 PF07690 Major Facilitator Superfamily IX88_01230 PF08543 Phosphomethylpyrimidine kinase IX88_01230 PF03070 TENA/THI-4/PQQC family IX88_01230 PF02581 Thiamine monophosphate synthase IX88_01235 PF06942 GlpM protein IX88_01245 PF00107 Zinc-binding dehydrogenase IX88_01245 PF08240 Alcohol dehydrogenase GroES-like domain IX88_01250 PF00440 Bacterial regulatory proteins, tetR family IX88_01250 PF16925 Tetracyclin repressor-like, C-terminal domain IX88_01255 PF17755 UvrA DNA-binding domain IX88_01255 PF17760 UvrA interaction domain IX88_01255 PF00005 ABC transporter IX88_01260 PF17158 Membrane-associated sensor, integral membrane domain IX88_01260 PF00990 Diguanylate cyclase, GGDEF domain IX88_01270 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_01280 PF00474 Sodium:solute symporter family IX88_01285 PF04341 Protein of unknown function, DUF485 IX88_01290 PF00072 Response regulator receiver domain IX88_01290 PF01627 Hpt domain IX88_01290 PF00512 His Kinase A (phospho-acceptor) domain IX88_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_01290 PF00672 HAMP domain IX88_01300 PF00196 Bacterial regulatory proteins, luxR family IX88_01300 PF00072 Response regulator receiver domain IX88_01305 PF03358 NADPH-dependent FMN reductase IX88_01310 PF00296 Luciferase-like monooxygenase IX88_01315 PF01037 Lrp/AsnC ligand binding domain IX88_01320 PF00857 Isochorismatase family IX88_01325 PF16177 Acetyl-coenzyme A synthetase N-terminus IX88_01325 PF13193 AMP-binding enzyme C-terminal domain IX88_01325 PF00501 AMP-binding enzyme IX88_01335 PF00924 Mechanosensitive ion channel IX88_01340 PF04452 RNA methyltransferase IX88_01345 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IX88_01350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_01360 PF00472 RF-1 domain IX88_01360 PF03462 PCRF domain IX88_01370 PF02272 DHHA1 domain IX88_01370 PF01368 DHH family IX88_01370 PF17768 RecJ OB domain IX88_01375 PF01243 Pyridoxamine 5'-phosphate oxidase IX88_01375 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IX88_01380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_01380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_01380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_01380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_01385 PF00571 CBS domain IX88_01385 PF00478 IMP dehydrogenase / GMP reductase domain IX88_01390 PF03692 Putative zinc- or iron-chelating domain IX88_01395 PF01613 Flavin reductase like domain IX88_01395 PF00258 Flavodoxin IX88_01400 PF07715 TonB-dependent Receptor Plug Domain IX88_01400 PF00593 TonB dependent receptor IX88_01405 PF01169 Uncharacterized protein family UPF0016 IX88_01415 PF02817 e3 binding domain IX88_01415 PF00364 Biotin-requiring enzyme IX88_01415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX88_01420 PF17831 Pyruvate dehydrogenase E1 component middle domain IX88_01420 PF00456 Transketolase, thiamine diphosphate binding domain IX88_01425 PF01551 Peptidase family M23 IX88_01435 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IX88_01440 PF12327 FtsZ family, C-terminal domain IX88_01440 PF00091 Tubulin/FtsZ family, GTPase domain IX88_01445 PF02491 SHS2 domain inserted in FTSA IX88_01450 PF08478 POTRA domain, FtsQ-type IX88_01450 PF03799 Cell division protein FtsQ IX88_01455 PF07478 D-ala D-ala ligase C-terminus IX88_01455 PF01820 D-ala D-ala ligase N-terminus IX88_01460 PF01225 Mur ligase family, catalytic domain IX88_01460 PF02875 Mur ligase family, glutamate ligase domain IX88_01460 PF08245 Mur ligase middle domain IX88_01465 PF03033 Glycosyltransferase family 28 N-terminal domain IX88_01465 PF04101 Glycosyltransferase family 28 C-terminal domain IX88_01470 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IX88_01470 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IX88_01480 PF07715 TonB-dependent Receptor Plug Domain IX88_01480 PF00593 TonB dependent receptor IX88_01485 PF00156 Phosphoribosyl transferase domain IX88_01490 PF03372 Endonuclease/Exonuclease/phosphatase family IX88_01495 PF03960 ArsC family IX88_01505 PF07859 alpha/beta hydrolase fold IX88_01510 PF07694 5TMR of 5TMR-LYT IX88_01510 PF00990 Diguanylate cyclase, GGDEF domain IX88_01515 PF11412 Disulphide bond corrector protein DsbC IX88_01515 PF02683 Cytochrome C biogenesis protein transmembrane region IX88_01545 PF00576 HIUase/Transthyretin family IX88_01550 PF00860 Permease family IX88_01560 PF01494 FAD binding domain IX88_01565 PF03561 Allantoicase repeat IX88_01570 PF04115 Ureidoglycolate lyase IX88_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_01575 PF00204 DNA gyrase B IX88_01575 PF01751 Toprim domain IX88_01575 PF00986 DNA gyrase B subunit, carboxyl terminus IX88_01580 PF05728 Uncharacterised protein family (UPF0227) IX88_01645 PF04717 Type VI secretion system, phage-baseplate injector IX88_01650 PF02600 Disulfide bond formation protein DsbB IX88_01655 PF04262 Glutamate-cysteine ligase IX88_01670 PF04286 Protein of unknown function (DUF445) IX88_01675 PF00155 Aminotransferase class I and II IX88_01680 PF01554 MatE IX88_01685 PF00106 short chain dehydrogenase IX88_01695 PF00072 Response regulator receiver domain IX88_01695 PF00486 Transcriptional regulatory protein, C terminal IX88_01700 PF11808 Phosphate regulon sensor protein PhoR IX88_01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_01700 PF00989 PAS fold IX88_01700 PF00512 His Kinase A (phospho-acceptor) domain IX88_01710 PF02666 Phosphatidylserine decarboxylase IX88_01715 PF00581 Rhodanese-like domain IX88_01720 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IX88_01720 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IX88_01725 PF02580 D-Tyr-tRNA(Tyr) deacylase IX88_01750 PF00925 GTP cyclohydrolase II IX88_01750 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IX88_01755 PF00885 6,7-dimethyl-8-ribityllumazine synthase IX88_01760 PF01029 NusB family IX88_01765 PF00586 AIR synthase related protein, N-terminal domain IX88_01765 PF02769 AIR synthase related protein, C-terminal domain IX88_01770 PF04608 Phosphatidylglycerophosphatase A IX88_01775 PF12804 MobA-like NTP transferase domain IX88_01775 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_01775 PF14602 Hexapeptide repeat of succinyl-transferase IX88_01780 PF01380 SIS domain IX88_01785 PF01177 Asp/Glu/Hydantoin racemase IX88_01790 PF13419 Haloacid dehalogenase-like hydrolase IX88_01800 PF00491 Arginase family IX88_01805 PF01979 Amidohydrolase family IX88_01810 PF00324 Amino acid permease IX88_01815 PF00221 Aromatic amino acid lyase IX88_01820 PF01175 Urocanase Rossmann-like domain IX88_01820 PF17391 Urocanase N-terminal domain IX88_01820 PF17392 Urocanase C-terminal domain IX88_01825 PF05962 HutD IX88_01830 PF00392 Bacterial regulatory proteins, gntR family IX88_01830 PF07702 UTRA domain IX88_01840 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX88_01840 PF07683 Cobalamin synthesis protein cobW C-terminal domain IX88_01850 PF00324 Amino acid permease IX88_01860 PF02798 Glutathione S-transferase, N-terminal domain IX88_01860 PF14497 Glutathione S-transferase, C-terminal domain IX88_01865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_01875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_01880 PF04463 Protein of unknown function (DUF523) IX88_01885 PF01554 MatE IX88_01890 PF01758 Sodium Bile acid symporter family IX88_01895 PF00857 Isochorismatase family IX88_01900 PF00701 Dihydrodipicolinate synthetase family IX88_01910 PF01259 SAICAR synthetase IX88_01920 PF01226 Formate/nitrite transporter IX88_01925 PF12002 MgsA AAA+ ATPase C terminal IX88_01925 PF16193 AAA C-terminal domain IX88_01925 PF00004 ATPase family associated with various cellular activities (AAA) IX88_01930 PF07995 Glucose / Sorbosone dehydrogenase IX88_01935 PF03692 Putative zinc- or iron-chelating domain IX88_01940 PF07043 Protein of unknown function (DUF1328) IX88_01955 PF10576 Iron-sulfur binding domain of endonuclease III IX88_01955 PF00633 Helix-hairpin-helix motif IX88_01955 PF00730 HhH-GPD superfamily base excision DNA repair protein IX88_01955 PF14815 NUDIX domain IX88_01970 PF03352 Methyladenine glycosylase IX88_01975 PF08240 Alcohol dehydrogenase GroES-like domain IX88_01975 PF00107 Zinc-binding dehydrogenase IX88_01980 PF00392 Bacterial regulatory proteins, gntR family IX88_01980 PF00155 Aminotransferase class I and II IX88_01990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_01990 PF03466 LysR substrate binding domain IX88_01995 PF00248 Aldo/keto reductase family IX88_02000 PF07690 Major Facilitator Superfamily IX88_02010 PF05173 Dihydrodipicolinate reductase, C-terminus IX88_02010 PF01113 Dihydrodipicolinate reductase, N-terminus IX88_02020 PF01556 DnaJ C terminal domain IX88_02020 PF00684 DnaJ central domain IX88_02020 PF00226 DnaJ domain IX88_02030 PF00873 AcrB/AcrD/AcrF family IX88_02035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_02040 PF00440 Bacterial regulatory proteins, tetR family IX88_02040 PF08361 MAATS-type transcriptional repressor, C-terminal region IX88_02045 PF00311 Phosphoenolpyruvate carboxylase IX88_02050 PF00860 Permease family IX88_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_02055 PF03466 LysR substrate binding domain IX88_02070 PF00920 Dehydratase family IX88_02075 PF00551 Formyl transferase IX88_02075 PF02911 Formyl transferase, C-terminal domain IX88_02080 PF01189 16S rRNA methyltransferase RsmB/F IX88_02080 PF01029 NusB family IX88_02090 PF00209 Sodium:neurotransmitter symporter family IX88_02135 PF00579 tRNA synthetases class I (W and Y) IX88_02140 PF03702 Anhydro-N-acetylmuramic acid kinase IX88_02145 PF00561 alpha/beta hydrolase fold IX88_02150 PF01521 Iron-sulphur cluster biosynthesis IX88_02170 PF00005 ABC transporter IX88_02170 PF12848 ABC transporter IX88_02175 PF09335 SNARE associated Golgi protein IX88_02185 PF00986 DNA gyrase B subunit, carboxyl terminus IX88_02185 PF00204 DNA gyrase B IX88_02185 PF18053 DNA gyrase B subunit insert domain IX88_02185 PF01751 Toprim domain IX88_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_02190 PF02463 RecF/RecN/SMC N terminal domain IX88_02195 PF02768 DNA polymerase III beta subunit, C-terminal domain IX88_02195 PF02767 DNA polymerase III beta subunit, central domain IX88_02195 PF00712 DNA polymerase III beta subunit, N-terminal domain IX88_02200 PF11638 DnaA N-terminal domain IX88_02200 PF00308 Bacterial dnaA protein IX88_02200 PF08299 Bacterial dnaA protein helix-turn-helix IX88_02205 PF00468 Ribosomal protein L34 IX88_02210 PF00825 Ribonuclease P IX88_02215 PF01809 Putative membrane protein insertion efficiency factor IX88_02220 PF14849 YidC periplasmic domain IX88_02220 PF02096 60Kd inner membrane protein IX88_02225 PF01926 50S ribosome-binding GTPase IX88_02225 PF12631 MnmE helical domain IX88_02225 PF10396 GTP-binding protein TrmE N-terminus IX88_02230 PF02583 Metal-sensitive transcriptional repressor IX88_02235 PF16916 Dimerisation domain of Zinc Transporter IX88_02235 PF01545 Cation efflux family IX88_02240 PF10411 Disulfide bond isomerase protein N-terminus IX88_02240 PF13098 Thioredoxin-like domain IX88_02250 PF00156 Phosphoribosyl transferase domain IX88_02260 PF01979 Amidohydrolase family IX88_02265 PF00355 Rieske [2Fe-2S] domain IX88_02270 PF03738 Glutathionylspermidine synthase preATP-grasp IX88_02280 PF03741 Integral membrane protein TerC family IX88_02285 PF01569 PAP2 superfamily IX88_02295 PF08245 Mur ligase middle domain IX88_02295 PF01225 Mur ligase family, catalytic domain IX88_02295 PF02875 Mur ligase family, glutamate ligase domain IX88_02305 PF00731 AIR carboxylase IX88_02310 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IX88_02310 PF02222 ATP-grasp domain IX88_02315 PF13406 Transglycosylase SLT domain IX88_02335 PF00012 Hsp70 protein IX88_02340 PF01025 GrpE IX88_02345 PF03466 LysR substrate binding domain IX88_02345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_02365 PF07859 alpha/beta hydrolase fold IX88_02370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IX88_02410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_02415 PF01252 Signal peptidase (SPase) II IX88_02420 PF00133 tRNA synthetases class I (I, L, M and V) IX88_02420 PF06827 Zinc finger found in FPG and IleRS IX88_02420 PF08264 Anticodon-binding domain of tRNA IX88_02425 PF06574 FAD synthetase IX88_02425 PF01687 Riboflavin kinase IX88_02435 PF01048 Phosphorylase superfamily IX88_02440 PF00440 Bacterial regulatory proteins, tetR family IX88_02440 PF08362 YcdC-like protein, C-terminal region IX88_02445 PF00005 ABC transporter IX88_02450 PF00528 Binding-protein-dependent transport system inner membrane component IX88_02455 PF00296 Luciferase-like monooxygenase IX88_02460 PF09084 NMT1/THI5 like IX88_02465 PF09084 NMT1/THI5 like IX88_02470 PF00583 Acetyltransferase (GNAT) family IX88_02470 PF00696 Amino acid kinase family IX88_02490 PF00106 short chain dehydrogenase IX88_02495 PF13419 Haloacid dehalogenase-like hydrolase IX88_02505 PF01323 DSBA-like thioredoxin domain IX88_02510 PF08360 QacR-like protein, C-terminal region IX88_02510 PF00440 Bacterial regulatory proteins, tetR family IX88_02515 PF00440 Bacterial regulatory proteins, tetR family IX88_02520 PF00175 Oxidoreductase NAD-binding domain IX88_02525 PF00487 Fatty acid desaturase IX88_02530 PF01138 3' exoribonuclease family, domain 1 IX88_02530 PF03725 3' exoribonuclease family, domain 2 IX88_02540 PF05506 Domain of unknown function (DUF756) IX88_02540 PF04185 Phosphoesterase family IX88_02550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IX88_02550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IX88_02555 PF01510 N-acetylmuramoyl-L-alanine amidase IX88_02560 PF03023 Lipid II flippase MurJ IX88_02565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_02565 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IX88_02570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_02570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IX88_02575 PF13807 G-rich domain on putative tyrosine kinase IX88_02575 PF02706 Chain length determinant protein IX88_02575 PF13614 AAA domain IX88_02580 PF01451 Low molecular weight phosphotyrosine protein phosphatase IX88_02585 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IX88_02585 PF02563 Polysaccharide biosynthesis/export protein IX88_02585 PF10531 SLBB domain IX88_02590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IX88_02590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IX88_02590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IX88_02600 PF00535 Glycosyl transferase family 2 IX88_02605 PF13439 Glycosyltransferase Family 4 IX88_02605 PF00534 Glycosyl transferases group 1 IX88_02615 PF13439 Glycosyltransferase Family 4 IX88_02615 PF00534 Glycosyl transferases group 1 IX88_02620 PF13477 Glycosyl transferase 4-like IX88_02620 PF00534 Glycosyl transferases group 1 IX88_02625 PF02397 Bacterial sugar transferase IX88_02630 PF00483 Nucleotidyl transferase IX88_02635 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IX88_02635 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IX88_02635 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IX88_02640 PF00342 Phosphoglucose isomerase IX88_02645 PF16363 GDP-mannose 4,6 dehydratase IX88_02655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_02655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_02655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_02655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_02660 PF02652 L-lactate permease IX88_02665 PF00392 Bacterial regulatory proteins, gntR family IX88_02665 PF07729 FCD domain IX88_02670 PF01070 FMN-dependent dehydrogenase IX88_02675 PF09330 D-lactate dehydrogenase, membrane binding IX88_02675 PF01565 FAD binding domain IX88_02680 PF00155 Aminotransferase class I and II IX88_02685 PF00392 Bacterial regulatory proteins, gntR family IX88_02685 PF07729 FCD domain IX88_02695 PF00285 Citrate synthase, C-terminal domain IX88_02700 PF00330 Aconitase family (aconitate hydratase) IX88_02700 PF00694 Aconitase C-terminal domain IX88_02755 PF00849 RNA pseudouridylate synthase IX88_02770 PF07715 TonB-dependent Receptor Plug Domain IX88_02770 PF00593 TonB dependent receptor IX88_02780 PF01037 Lrp/AsnC ligand binding domain IX88_02785 PF01266 FAD dependent oxidoreductase IX88_02790 PF01168 Alanine racemase, N-terminal domain IX88_02790 PF00842 Alanine racemase, C-terminal domain IX88_02795 PF01042 Endoribonuclease L-PSP IX88_02800 PF00324 Amino acid permease IX88_02805 PF00324 Amino acid permease IX88_02815 PF00171 Aldehyde dehydrogenase family IX88_02820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX88_02820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX88_02825 PF00501 AMP-binding enzyme IX88_02825 PF13193 AMP-binding enzyme C-terminal domain IX88_02830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_02830 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_02830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_02835 PF00378 Enoyl-CoA hydratase/isomerase IX88_02840 PF00378 Enoyl-CoA hydratase/isomerase IX88_02845 PF00083 Sugar (and other) transporter IX88_02845 PF07690 Major Facilitator Superfamily IX88_02850 PF00765 Autoinducer synthase IX88_02860 PF00196 Bacterial regulatory proteins, luxR family IX88_02860 PF03472 Autoinducer binding domain IX88_02865 PF00501 AMP-binding enzyme IX88_02870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_02870 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_02870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_02875 PF16197 Ketoacyl-synthetase C-terminal extension IX88_02875 PF00109 Beta-ketoacyl synthase, N-terminal domain IX88_02875 PF02801 Beta-ketoacyl synthase, C-terminal domain IX88_02875 PF08242 Methyltransferase domain IX88_02875 PF14765 Polyketide synthase dehydratase IX88_02875 PF00550 Phosphopantetheine attachment site IX88_02875 PF00975 Thioesterase domain IX88_02880 PF00975 Thioesterase domain IX88_02880 PF00668 Condensation domain IX88_02880 PF13193 AMP-binding enzyme C-terminal domain IX88_02880 PF00501 AMP-binding enzyme IX88_02880 PF00550 Phosphopantetheine attachment site IX88_02895 PF16363 GDP-mannose 4,6 dehydratase IX88_02900 PF01648 4'-phosphopantetheinyl transferase superfamily IX88_02915 PF01722 BolA-like protein IX88_02925 PF13614 AAA domain IX88_02940 PF09335 SNARE associated Golgi protein IX88_02945 PF07681 DoxX IX88_02950 PF04286 Protein of unknown function (DUF445) IX88_02955 PF00117 Glutamine amidotransferase class-I IX88_02955 PF02540 NAD synthase IX88_02955 PF00958 GMP synthase C terminal domain IX88_02960 PF13427 Domain of unknown function (DUF4111) IX88_02960 PF01909 Nucleotidyltransferase domain IX88_02965 PF03551 Transcriptional regulator PadR-like family IX88_02975 PF02678 Pirin IX88_02975 PF05726 Pirin C-terminal cupin domain IX88_02995 PF03485 Arginyl tRNA synthetase N terminal domain IX88_02995 PF05746 DALR anticodon binding domain IX88_02995 PF00750 tRNA synthetases class I (R) IX88_03000 PF03949 Malic enzyme, NAD binding domain IX88_03000 PF00390 Malic enzyme, N-terminal domain IX88_03005 PF04261 Dyp-type peroxidase family IX88_03010 PF01810 LysE type translocator IX88_03015 PF00950 ABC 3 transport family IX88_03020 PF00005 ABC transporter IX88_03040 PF00119 ATP synthase A chain IX88_03045 PF00137 ATP synthase subunit C IX88_03050 PF00430 ATP synthase B/B' CF(0) IX88_03055 PF00213 ATP synthase delta (OSCP) subunit IX88_03060 PF02874 ATP synthase alpha/beta family, beta-barrel domain IX88_03060 PF00306 ATP synthase alpha/beta chain, C terminal domain IX88_03060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX88_03065 PF00231 ATP synthase IX88_03070 PF02874 ATP synthase alpha/beta family, beta-barrel domain IX88_03070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX88_03075 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IX88_03085 PF00255 Glutathione peroxidase IX88_03095 PF07690 Major Facilitator Superfamily IX88_03100 PF00440 Bacterial regulatory proteins, tetR family IX88_03105 PF00892 EamA-like transporter family IX88_03110 PF01300 Telomere recombination IX88_03115 PF17782 DprA winged helix domain IX88_03115 PF02481 DNA recombination-mediator protein A IX88_03125 PF01327 Polypeptide deformylase IX88_03150 PF00440 Bacterial regulatory proteins, tetR family IX88_03185 PF00291 Pyridoxal-phosphate dependent enzyme IX88_03195 PF03358 NADPH-dependent FMN reductase IX88_03215 PF11842 Domain of unknown function (DUF3362) IX88_03215 PF08497 Radical SAM N-terminal IX88_03215 PF04055 Radical SAM superfamily IX88_03230 PF00817 impB/mucB/samB family IX88_03230 PF11798 IMS family HHH motif IX88_03230 PF11799 impB/mucB/samB family C-terminal domain IX88_03240 PF07690 Major Facilitator Superfamily IX88_03245 PF03641 Possible lysine decarboxylase IX88_03250 PF03741 Integral membrane protein TerC family IX88_03250 PF03471 Transporter associated domain IX88_03255 PF02810 SEC-C motif IX88_03260 PF03458 UPF0126 domain IX88_03265 PF07690 Major Facilitator Superfamily IX88_03270 PF00521 DNA gyrase/topoisomerase IV, subunit A IX88_03270 PF03989 DNA gyrase C-terminal domain, beta-propeller IX88_03275 PF13193 AMP-binding enzyme C-terminal domain IX88_03275 PF00501 AMP-binding enzyme IX88_03290 PF00719 Inorganic pyrophosphatase IX88_03295 PF03573 outer membrane porin, OprD family IX88_03305 PF00701 Dihydrodipicolinate synthetase family IX88_03315 PF00155 Aminotransferase class I and II IX88_03315 PF00392 Bacterial regulatory proteins, gntR family IX88_03320 PF01078 Magnesium chelatase, subunit ChlI IX88_03320 PF13335 Magnesium chelatase, subunit ChlI C-terminal IX88_03330 PF00543 Nitrogen regulatory protein P-II IX88_03335 PF00909 Ammonium Transporter Family IX88_03340 PF03477 ATP cone domain IX88_03345 PF01872 RibD C-terminal domain IX88_03345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IX88_03355 PF00677 Lumazine binding domain IX88_03375 PF02789 Cytosol aminopeptidase family, N-terminal domain IX88_03375 PF00883 Cytosol aminopeptidase family, catalytic domain IX88_03385 PF03739 Lipopolysaccharide export system permease LptF/LptG IX88_03390 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IX88_03390 PF01676 Metalloenzyme superfamily IX88_03395 PF03572 Peptidase family S41 IX88_03395 PF00595 PDZ domain IX88_03400 PF00072 Response regulator receiver domain IX88_03400 PF00158 Sigma-54 interaction domain IX88_03400 PF02954 Bacterial regulatory protein, Fis family IX88_03405 PF00512 His Kinase A (phospho-acceptor) domain IX88_03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_03410 PF00196 Bacterial regulatory proteins, luxR family IX88_03410 PF00072 Response regulator receiver domain IX88_03415 PF00768 D-alanyl-D-alanine carboxypeptidase IX88_03420 PF00291 Pyridoxal-phosphate dependent enzyme IX88_03425 PF01842 ACT domain IX88_03425 PF00742 Homoserine dehydrogenase IX88_03425 PF03447 Homoserine dehydrogenase, NAD binding domain IX88_03430 PF10411 Disulfide bond isomerase protein N-terminus IX88_03430 PF13098 Thioredoxin-like domain IX88_03435 PF00589 Phage integrase family IX88_03435 PF02899 Phage integrase, N-terminal SAM-like domain IX88_03445 PF02421 Ferrous iron transport protein B IX88_03445 PF07664 Ferrous iron transport protein B C terminus IX88_03445 PF07670 Nucleoside recognition IX88_03455 PF02875 Mur ligase family, glutamate ligase domain IX88_03455 PF08245 Mur ligase middle domain IX88_03460 PF01098 Cell cycle protein IX88_03465 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX88_03470 PF01258 Prokaryotic dksA/traR C4-type zinc finger IX88_03475 PF00149 Calcineurin-like phosphoesterase IX88_03480 PF00293 NUDIX domain IX88_03485 PF01964 Radical SAM ThiC family IX88_03485 PF13667 ThiC-associated domain IX88_03500 PF00892 EamA-like transporter family IX88_03505 PF02321 Outer membrane efflux protein IX88_03510 PF01895 PhoU domain IX88_03515 PF04362 Bacterial Fe(2+) trafficking IX88_03520 PF00206 Lyase IX88_03520 PF14698 Argininosuccinate lyase C-terminal IX88_03525 PF06580 Histidine kinase IX88_03525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_03525 PF07694 5TMR of 5TMR-LYT IX88_03530 PF04397 LytTr DNA-binding domain IX88_03530 PF00072 Response regulator receiver domain IX88_03535 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IX88_03535 PF03900 Porphobilinogen deaminase, C-terminal domain IX88_03560 PF00816 H-NS histone family IX88_03575 PF00263 Bacterial type II and III secretion system protein IX88_03575 PF03958 Bacterial type II/III secretion system short domain IX88_03580 PF00498 FHA domain IX88_03580 PF12401 Protein of unknown function (DUF2662) IX88_03585 PF13419 Haloacid dehalogenase-like hydrolase IX88_03590 PF00425 chorismate binding enzyme IX88_03590 PF04715 Anthranilate synthase component I, N terminal region IX88_03625 PF00009 Elongation factor Tu GTP binding domain IX88_03625 PF03143 Elongation factor Tu C-terminal domain IX88_03625 PF03144 Elongation factor Tu domain 2 IX88_03635 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IX88_03640 PF02357 Transcription termination factor nusG IX88_03640 PF00467 KOW motif IX88_03645 PF00298 Ribosomal protein L11, RNA binding domain IX88_03645 PF03946 Ribosomal protein L11, N-terminal domain IX88_03650 PF00687 Ribosomal protein L1p/L10e family IX88_03655 PF00466 Ribosomal protein L10 IX88_03660 PF16320 Ribosomal protein L7/L12 dimerisation domain IX88_03660 PF00542 Ribosomal protein L7/L12 C-terminal domain IX88_03665 PF00562 RNA polymerase Rpb2, domain 6 IX88_03665 PF10385 RNA polymerase beta subunit external 1 domain IX88_03665 PF04565 RNA polymerase Rpb2, domain 3 IX88_03665 PF04561 RNA polymerase Rpb2, domain 2 IX88_03665 PF04560 RNA polymerase Rpb2, domain 7 IX88_03665 PF04563 RNA polymerase beta subunit IX88_03670 PF04998 RNA polymerase Rpb1, domain 5 IX88_03670 PF05000 RNA polymerase Rpb1, domain 4 IX88_03670 PF04983 RNA polymerase Rpb1, domain 3 IX88_03670 PF00623 RNA polymerase Rpb1, domain 2 IX88_03670 PF04997 RNA polymerase Rpb1, domain 1 IX88_03700 PF01636 Phosphotransferase enzyme family IX88_03705 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IX88_03725 PF03389 MobA/MobL family IX88_03725 PF17841 BID domain of Bartonella effector protein (Bep) IX88_03725 PF01443 Viral (Superfamily 1) RNA helicase IX88_03735 PF13610 DDE domain IX88_03745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_03745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_03745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_03745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_03750 PF00809 Pterin binding enzyme IX88_03765 PF00561 alpha/beta hydrolase fold IX88_03770 PF03553 Na+/H+ antiporter family IX88_03770 PF13726 Na+-H+ antiporter family IX88_03785 PF00183 Hsp90 protein IX88_03785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_03800 PF01323 DSBA-like thioredoxin domain IX88_03810 PF09278 MerR, DNA binding IX88_03810 PF00376 MerR family regulatory protein IX88_03825 PF00108 Thiolase, N-terminal domain IX88_03825 PF02803 Thiolase, C-terminal domain IX88_03830 PF00378 Enoyl-CoA hydratase/isomerase IX88_03830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_03830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_03845 PF08459 UvrC Helix-hairpin-helix N-terminal IX88_03845 PF01541 GIY-YIG catalytic domain IX88_03845 PF02151 UvrB/uvrC motif IX88_03855 PF01066 CDP-alcohol phosphatidyltransferase IX88_03860 PF12833 Helix-turn-helix domain IX88_03860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX88_03860 PF02805 Metal binding domain of Ada IX88_03860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IX88_03885 PF13533 Biotin-lipoyl like IX88_03890 PF03652 Holliday junction resolvase IX88_03895 PF02622 Uncharacterized ACR, COG1678 IX88_03900 PF02463 RecF/RecN/SMC N terminal domain IX88_03910 PF06865 Pyrimidine/purine nucleoside phosphorylase IX88_03915 PF00588 SpoU rRNA Methylase family IX88_03915 PF08032 RNA 2'-O ribose methyltransferase substrate binding IX88_03925 PF01121 Dephospho-CoA kinase IX88_03930 PF01478 Type IV leader peptidase family IX88_03930 PF06750 Bacterial Peptidase A24 N-terminal domain IX88_03935 PF00482 Type II secretion system (T2SS), protein F IX88_03940 PF00437 Type II/IV secretion system protein IX88_03940 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IX88_03945 PF00121 Triosephosphate isomerase IX88_03950 PF03840 Preprotein translocase SecG subunit IX88_03975 PF17384 RimP C-terminal SH3 domain IX88_03975 PF02576 RimP N-terminal domain IX88_03980 PF08529 NusA N-terminal domain IX88_03980 PF00575 S1 RNA binding domain IX88_03980 PF13184 NusA-like KH domain IX88_03985 PF04760 Translation initiation factor IF-2, N-terminal region IX88_03985 PF08364 Bacterial translation initiation factor IF-2 associated region IX88_03985 PF11987 Translation-initiation factor 2 IX88_03985 PF00009 Elongation factor Tu GTP binding domain IX88_03990 PF02033 Ribosome-binding factor A IX88_04000 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IX88_04010 PF00361 Proton-conducting membrane transporter IX88_04015 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IX88_04020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IX88_04020 PF13244 Domain of unknown function (DUF4040) IX88_04020 PF00361 Proton-conducting membrane transporter IX88_04020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IX88_04035 PF01502 Phosphoribosyl-AMP cyclohydrolase IX88_04040 PF01494 FAD binding domain IX88_04045 PF03109 ABC1 family IX88_04055 PF01209 ubiE/COQ5 methyltransferase family IX88_04065 PF03976 Polyphosphate kinase 2 (PPK2) IX88_04075 PF17946 RecC C-terminal domain IX88_04080 PF12705 PD-(D/E)XK nuclease superfamily IX88_04080 PF13361 UvrD-like helicase C-terminal domain IX88_04080 PF00580 UvrD/REP helicase N-terminal domain IX88_04085 PF13538 UvrD-like helicase C-terminal domain IX88_04095 PF00312 Ribosomal protein S15 IX88_04100 PF03725 3' exoribonuclease family, domain 2 IX88_04100 PF00575 S1 RNA binding domain IX88_04100 PF00013 KH domain IX88_04100 PF01138 3' exoribonuclease family, domain 1 IX88_04100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IX88_04105 PF01544 CorA-like Mg2+ transporter protein IX88_04115 PF00226 DnaJ domain IX88_04115 PF01556 DnaJ C terminal domain IX88_04125 PF01430 Hsp33 protein IX88_04130 PF02254 TrkA-N domain IX88_04130 PF00999 Sodium/hydrogen exchanger family IX88_04135 PF17764 3′ DNA-binding domain (3′BD) IX88_04135 PF18074 Primosomal protein N C-terminal domain IX88_04135 PF00270 DEAD/DEAH box helicase IX88_04135 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IX88_04135 PF00271 Helicase conserved C-terminal domain IX88_04140 PF00482 Type II secretion system (T2SS), protein F IX88_04145 PF08334 Type II secretion system (T2SS), protein G IX88_04145 PF07963 Prokaryotic N-terminal methylation motif IX88_04155 PF01588 Putative tRNA binding domain IX88_04160 PF00795 Carbon-nitrogen hydrolase IX88_04165 PF00571 CBS domain IX88_04165 PF03471 Transporter associated domain IX88_04170 PF01206 Sulfurtransferase TusA IX88_04190 PF01177 Asp/Glu/Hydantoin racemase IX88_04200 PF00762 Ferrochelatase IX88_04205 PF00753 Metallo-beta-lactamase superfamily IX88_04210 PF03884 DNA gyrase inhibitor YacG IX88_04230 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IX88_04240 PF01197 Ribosomal protein L31 IX88_04245 PF03109 ABC1 family IX88_04250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_04250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_04255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_04255 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_04255 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_04260 PF01554 MatE IX88_04270 PF06969 HemN C-terminal domain IX88_04270 PF04055 Radical SAM superfamily IX88_04280 PF03466 LysR substrate binding domain IX88_04280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_04295 PF13193 AMP-binding enzyme C-terminal domain IX88_04295 PF00501 AMP-binding enzyme IX88_04300 PF00575 S1 RNA binding domain IX88_04300 PF10150 Ribonuclease E/G family IX88_04300 PF12111 Polyribonucleotide phosphorylase C terminal IX88_04305 PF01479 S4 domain IX88_04305 PF00849 RNA pseudouridylate synthase IX88_04310 PF13419 Haloacid dehalogenase-like hydrolase IX88_04315 PF13280 WYL domain IX88_04315 PF08279 HTH domain IX88_04320 PF02798 Glutathione S-transferase, N-terminal domain IX88_04330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_04330 PF03466 LysR substrate binding domain IX88_04335 PF12706 Beta-lactamase superfamily domain IX88_04340 PF00141 Peroxidase IX88_04345 PF00391 PEP-utilising enzyme, mobile domain IX88_04345 PF05524 PEP-utilising enzyme, N-terminal IX88_04345 PF01590 GAF domain IX88_04345 PF02896 PEP-utilising enzyme, TIM barrel domain IX88_04350 PF00293 NUDIX domain IX88_04360 PF03466 LysR substrate binding domain IX88_04360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_04370 PF00330 Aconitase family (aconitate hydratase) IX88_04375 PF00694 Aconitase C-terminal domain IX88_04385 PF00180 Isocitrate/isopropylmalate dehydrogenase IX88_04400 PF01176 Translation initiation factor 1A / IF-1 IX88_04410 PF01416 tRNA pseudouridine synthase IX88_04430 PF02774 Semialdehyde dehydrogenase, dimerisation domain IX88_04430 PF01118 Semialdehyde dehydrogenase, NAD binding domain IX88_04440 PF00375 Sodium:dicarboxylate symporter family IX88_04450 PF03279 Bacterial lipid A biosynthesis acyltransferase IX88_04455 PF01810 LysE type translocator IX88_04475 PF00107 Zinc-binding dehydrogenase IX88_04475 PF08240 Alcohol dehydrogenase GroES-like domain IX88_04480 PF01638 HxlR-like helix-turn-helix IX88_04490 PF01751 Toprim domain IX88_04490 PF01131 DNA topoisomerase IX88_04490 PF08272 Topoisomerase I zinc-ribbon-like IX88_04490 PF01396 Topoisomerase DNA binding C4 zinc finger IX88_04505 PF13361 UvrD-like helicase C-terminal domain IX88_04505 PF00580 UvrD/REP helicase N-terminal domain IX88_04510 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IX88_04530 PF00999 Sodium/hydrogen exchanger family IX88_04530 PF02254 TrkA-N domain IX88_04535 PF00471 Ribosomal protein L33 IX88_04540 PF00830 Ribosomal L28 family IX88_04545 PF00171 Aldehyde dehydrogenase family IX88_04555 PF00551 Formyl transferase IX88_04555 PF01842 ACT domain IX88_04565 PF01618 MotA/TolQ/ExbB proton channel family IX88_04575 PF01625 Peptide methionine sulfoxide reductase IX88_04585 PF00186 Dihydrofolate reductase IX88_04590 PF00303 Thymidylate synthase IX88_04605 PF01790 Prolipoprotein diacylglyceryl transferase IX88_04625 PF00902 Sec-independent protein translocase protein (TatC) IX88_04630 PF02416 mttA/Hcf106 family IX88_04635 PF02416 mttA/Hcf106 family IX88_04645 PF01725 Ham1 family IX88_04655 PF07021 Methionine biosynthesis protein MetW IX88_04655 PF00561 alpha/beta hydrolase fold IX88_04660 PF00561 alpha/beta hydrolase fold IX88_04665 PF00682 HMGL-like IX88_04665 PF08502 LeuA allosteric (dimerisation) domain IX88_04670 PF13640 2OG-Fe(II) oxygenase superfamily IX88_04670 PF18331 PKHD-type hydroxylase C-terminal domain IX88_04675 PF07715 TonB-dependent Receptor Plug Domain IX88_04675 PF00593 TonB dependent receptor IX88_04680 PF05697 Bacterial trigger factor protein (TF) IX88_04680 PF05698 Bacterial trigger factor protein (TF) C-terminus IX88_04680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_04685 PF00574 Clp protease IX88_04690 PF10431 C-terminal, D2-small domain, of ClpB protein IX88_04690 PF07724 AAA domain (Cdc48 subfamily) IX88_04690 PF06689 ClpX C4-type zinc finger IX88_04705 PF05683 Fumarase C-terminus IX88_04705 PF05681 Fumarate hydratase (Fumerase) IX88_04710 PF01515 Phosphate acetyl/butaryl transferase IX88_04710 PF07085 DRTGG domain IX88_04715 PF00871 Acetokinase family IX88_04725 PF00920 Dehydratase family IX88_04730 PF01081 KDPG and KHG aldolase IX88_04735 PF02447 GntP family permease IX88_04740 PF01202 Shikimate kinase IX88_04745 PF00171 Aldehyde dehydrogenase family IX88_04750 PF00171 Aldehyde dehydrogenase family IX88_04755 PF00561 alpha/beta hydrolase fold IX88_04765 PF00933 Glycosyl hydrolase family 3 N terminal domain IX88_04770 PF17804 Tail specific protease N-terminal domain IX88_04770 PF03572 Peptidase family S41 IX88_04770 PF00595 PDZ domain IX88_04770 PF11818 C-terminal domain of tail specific protease (DUF3340) IX88_04775 PF13439 Glycosyltransferase Family 4 IX88_04775 PF00534 Glycosyl transferases group 1 IX88_04780 PF01569 PAP2 superfamily IX88_04785 PF04384 Iron-sulphur cluster assembly IX88_04790 PF00334 Nucleoside diphosphate kinase IX88_04795 PF04055 Radical SAM superfamily IX88_04805 PF13464 Domain of unknown function (DUF4115) IX88_04810 PF04551 GcpE protein IX88_04815 PF13393 Histidyl-tRNA synthetase IX88_04815 PF03129 Anticodon binding domain IX88_04825 PF13360 PQQ-like domain IX88_04830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IX88_04830 PF01926 50S ribosome-binding GTPase IX88_04840 PF02556 Preprotein translocase subunit SecB IX88_04845 PF00462 Glutaredoxin IX88_04855 PF03193 RsgA GTPase IX88_04860 PF00929 Exonuclease IX88_04875 PF02321 Outer membrane efflux protein IX88_04880 PF02687 FtsX-like permease family IX88_04880 PF00005 ABC transporter IX88_04880 PF12704 MacB-like periplasmic core domain IX88_04885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_04900 PF13603 Leucyl-tRNA synthetase, Domain 2 IX88_04900 PF00133 tRNA synthetases class I (I, L, M and V) IX88_04900 PF09334 tRNA synthetases class I (M) IX88_04900 PF08264 Anticodon-binding domain of tRNA IX88_04910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX88_04910 PF00205 Thiamine pyrophosphate enzyme, central domain IX88_04910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX88_04915 PF10369 Small subunit of acetolactate synthase IX88_04920 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IX88_04920 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IX88_04935 PF00563 EAL domain IX88_04935 PF00990 Diguanylate cyclase, GGDEF domain IX88_04935 PF03707 Bacterial signalling protein N terminal repeat IX88_04955 PF16658 Class II release factor RF3, C-terminal domain IX88_04955 PF03144 Elongation factor Tu domain 2 IX88_04955 PF00009 Elongation factor Tu GTP binding domain IX88_04970 PF01026 TatD related DNase IX88_04975 PF00330 Aconitase family (aconitate hydratase) IX88_04975 PF00694 Aconitase C-terminal domain IX88_04985 PF00899 ThiF family IX88_04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_04990 PF03466 LysR substrate binding domain IX88_05000 PF01207 Dihydrouridine synthase (Dus) IX88_05015 PF02463 RecF/RecN/SMC N terminal domain IX88_05020 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IX88_05025 PF07690 Major Facilitator Superfamily IX88_05035 PF00892 EamA-like transporter family IX88_05040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IX88_05040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IX88_05045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IX88_05050 PF02233 NAD(P) transhydrogenase beta subunit IX88_05055 PF00106 short chain dehydrogenase IX88_05065 PF01261 Xylose isomerase-like TIM barrel IX88_05070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX88_05070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX88_05075 PF00378 Enoyl-CoA hydratase/isomerase IX88_05080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_05080 PF00512 His Kinase A (phospho-acceptor) domain IX88_05080 PF00672 HAMP domain IX88_05080 PF01627 Hpt domain IX88_05080 PF00072 Response regulator receiver domain IX88_05080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IX88_05085 PF00291 Pyridoxal-phosphate dependent enzyme IX88_05095 PF05958 tRNA (Uracil-5-)-methyltransferase IX88_05100 PF04607 Region found in RelA / SpoT proteins IX88_05100 PF02824 TGS domain IX88_05100 PF13291 ACT domain IX88_05110 PF03819 MazG nucleotide pyrophosphohydrolase domain IX88_05120 PF12626 Polymerase A arginine-rich C-terminus IX88_05120 PF12627 Probable RNA and SrmB- binding site of polymerase A IX88_05120 PF01743 Poly A polymerase head domain IX88_05125 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IX88_05130 PF02548 Ketopantoate hydroxymethyltransferase IX88_05135 PF02569 Pantoate-beta-alanine ligase IX88_05140 PF03668 P-loop ATPase protein family IX88_05145 PF00381 PTS HPr component phosphorylation site IX88_05150 PF04751 Protein of unknown function (DUF615) IX88_05155 PF00501 AMP-binding enzyme IX88_05155 PF13193 AMP-binding enzyme C-terminal domain IX88_05160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX88_05160 PF03129 Anticodon binding domain IX88_05160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IX88_05160 PF02824 TGS domain IX88_05165 PF00707 Translation initiation factor IF-3, C-terminal domain IX88_05165 PF05198 Translation initiation factor IF-3, N-terminal domain IX88_05170 PF02798 Glutathione S-transferase, N-terminal domain IX88_05170 PF00043 Glutathione S-transferase, C-terminal domain IX88_05175 PF09335 SNARE associated Golgi protein IX88_05180 PF07690 Major Facilitator Superfamily IX88_05185 PF01632 Ribosomal protein L35 IX88_05190 PF00453 Ribosomal protein L20 IX88_05210 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IX88_05210 PF01409 tRNA synthetases class II core domain (F) IX88_05215 PF03483 B3/4 domain IX88_05215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IX88_05215 PF03484 tRNA synthetase B5 domain IX88_05215 PF01588 Putative tRNA binding domain IX88_05215 PF03147 Ferredoxin-fold anticodon binding domain IX88_05220 PF00216 Bacterial DNA-binding protein IX88_05230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX88_05230 PF07498 Rho termination factor, N-terminal domain IX88_05230 PF07497 Rho termination factor, RNA-binding domain IX88_05235 PF00085 Thioredoxin IX88_05240 PF02541 Ppx/GppA phosphatase family IX88_05245 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IX88_05250 PF11734 TilS substrate C-terminal domain IX88_05250 PF09179 TilS substrate binding domain IX88_05250 PF01171 PP-loop family IX88_05255 PF03807 NADP oxidoreductase coenzyme F420-dependent IX88_05255 PF14748 Pyrroline-5-carboxylate reductase dimerisation IX88_05260 PF02325 YGGT family IX88_05265 PF01612 3'-5' exonuclease IX88_05265 PF00476 DNA polymerase family A IX88_05265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IX88_05265 PF01367 5'-3' exonuclease, C-terminal SAM fold IX88_05285 PF00437 Type II/IV secretion system protein IX88_05290 PF02566 OsmC-like protein IX88_05295 PF01047 MarR family IX88_05305 PF00795 Carbon-nitrogen hydrolase IX88_05350 PF04552 Sigma-54, DNA binding domain IX88_05350 PF04963 Sigma-54 factor, core binding domain IX88_05350 PF00309 Sigma-54 factor, Activator interacting domain (AID) IX88_05355 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IX88_05360 PF01722 BolA-like protein IX88_05365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IX88_05370 PF01634 ATP phosphoribosyltransferase IX88_05375 PF00815 Histidinol dehydrogenase IX88_05380 PF00155 Aminotransferase class I and II IX88_05385 PF04715 Anthranilate synthase component I, N terminal region IX88_05385 PF00425 chorismate binding enzyme IX88_05440 PF00293 NUDIX domain IX88_05445 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_05450 PF00814 Glycoprotease family IX88_05455 PF04445 Putative SAM-dependent methyltransferase IX88_05465 PF00756 Putative esterase IX88_05475 PF00834 Ribulose-phosphate 3 epimerase family IX88_05490 PF07732 Multicopper oxidase IX88_05490 PF07731 Multicopper oxidase IX88_05490 PF00394 Multicopper oxidase IX88_05505 PF00893 Small Multidrug Resistance protein IX88_05515 PF01960 ArgJ family IX88_05520 PF02445 Quinolinate synthetase A protein IX88_05550 PF00962 Adenosine/AMP deaminase IX88_05555 PF08240 Alcohol dehydrogenase GroES-like domain IX88_05555 PF00107 Zinc-binding dehydrogenase IX88_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_05560 PF03466 LysR substrate binding domain IX88_05565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_05565 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_05565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_05570 PF07690 Major Facilitator Superfamily IX88_05575 PF02515 CoA-transferase family III IX88_05580 PF00440 Bacterial regulatory proteins, tetR family IX88_05580 PF17932 Tetracyclin repressor-like, C-terminal domain IX88_05595 PF14537 Cytochrome c3 IX88_05595 PF00890 FAD binding domain IX88_05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_05600 PF03466 LysR substrate binding domain IX88_05610 PF07690 Major Facilitator Superfamily IX88_05615 PF03466 LysR substrate binding domain IX88_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_05620 PF01810 LysE type translocator IX88_05625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_05625 PF03466 LysR substrate binding domain IX88_05635 PF01717 Cobalamin-independent synthase, Catalytic domain IX88_05635 PF08267 Cobalamin-independent synthase, N-terminal domain IX88_05640 PF01613 Flavin reductase like domain IX88_05690 PF02567 Phenazine biosynthesis-like protein IX88_05700 PF00268 Ribonucleotide reductase, small chain IX88_05710 PF00317 Ribonucleotide reductase, all-alpha domain IX88_05710 PF02867 Ribonucleotide reductase, barrel domain IX88_05710 PF03477 ATP cone domain IX88_05720 PF00486 Transcriptional regulatory protein, C terminal IX88_05720 PF00072 Response regulator receiver domain IX88_05725 PF00672 HAMP domain IX88_05725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_05725 PF00512 His Kinase A (phospho-acceptor) domain IX88_05735 PF17151 Periplasmic sensor domain IX88_05735 PF00990 Diguanylate cyclase, GGDEF domain IX88_05740 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IX88_05745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IX88_05750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IX88_05750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IX88_05760 PF10531 SLBB domain IX88_05760 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IX88_05760 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IX88_05765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX88_05765 PF00384 Molybdopterin oxidoreductase IX88_05765 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IX88_05770 PF00146 NADH dehydrogenase IX88_05775 PF12838 4Fe-4S dicluster domain IX88_05780 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IX88_05785 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IX88_05790 PF00361 Proton-conducting membrane transporter IX88_05790 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IX88_05795 PF00361 Proton-conducting membrane transporter IX88_05800 PF00361 Proton-conducting membrane transporter IX88_05810 PF00313 'Cold-shock' DNA-binding domain IX88_05820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_05820 PF03466 LysR substrate binding domain IX88_05825 PF00175 Oxidoreductase NAD-binding domain IX88_05825 PF00970 Oxidoreductase FAD-binding domain IX88_05840 PF05552 Conserved TM helix IX88_05855 PF00291 Pyridoxal-phosphate dependent enzyme IX88_05860 PF13533 Biotin-lipoyl like IX88_05885 PF01588 Putative tRNA binding domain IX88_05885 PF09334 tRNA synthetases class I (M) IX88_05895 PF10609 NUBPL iron-transfer P-loop NTPase IX88_05900 PF01048 Phosphorylase superfamily IX88_05915 PF00692 dUTPase IX88_05945 PF01207 Dihydrouridine synthase (Dus) IX88_05955 PF02881 SRP54-type protein, helical bundle domain IX88_05955 PF02978 Signal peptide binding domain IX88_05955 PF00448 SRP54-type protein, GTPase domain IX88_05960 PF03309 Type III pantothenate kinase IX88_05970 PF01925 Sulfite exporter TauE/SafE IX88_05980 PF02463 RecF/RecN/SMC N terminal domain IX88_05980 PF06470 SMC proteins Flexible Hinge Domain IX88_05990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IX88_05990 PF00533 BRCA1 C Terminus (BRCT) domain IX88_05990 PF03120 NAD-dependent DNA ligase OB-fold domain IX88_05990 PF12826 Helix-hairpin-helix motif IX88_05990 PF01653 NAD-dependent DNA ligase adenylation domain IX88_05995 PF00210 Ferritin-like domain IX88_06000 PF07690 Major Facilitator Superfamily IX88_06005 PF00982 Glycosyltransferase family 20 IX88_06010 PF02358 Trehalose-phosphatase IX88_06015 PF08241 Methyltransferase domain IX88_06015 PF12697 Alpha/beta hydrolase family IX88_06020 PF04055 Radical SAM superfamily IX88_06020 PF00202 Aminotransferase class-III IX88_06020 PF06968 Biotin and Thiamin Synthesis associated domain IX88_06025 PF00155 Aminotransferase class I and II IX88_06040 PF01479 S4 domain IX88_06040 PF00849 RNA pseudouridylate synthase IX88_06045 PF04079 Segregation and condensation complex subunit ScpB IX88_06050 PF02616 Segregation and condensation protein ScpA IX88_06055 PF01300 Telomere recombination IX88_06060 PF04315 Elongation factor P hydroxylase IX88_06065 PF02620 Large ribosomal RNA subunit accumulation protein YceD IX88_06070 PF01783 Ribosomal L32p protein family IX88_06075 PF00698 Acyl transferase domain IX88_06085 PF00550 Phosphopantetheine attachment site IX88_06090 PF01476 LysM domain IX88_06090 PF04972 BON domain IX88_06095 PF08543 Phosphomethylpyrimidine kinase IX88_06095 PF03070 TENA/THI-4/PQQC family IX88_06095 PF02581 Thiamine monophosphate synthase IX88_06105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IX88_06120 PF02261 Aspartate decarboxylase IX88_06125 PF01195 Peptidyl-tRNA hydrolase IX88_06130 PF01386 Ribosomal L25p family IX88_06135 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IX88_06135 PF14572 Phosphoribosyl synthetase-associated domain IX88_06160 PF08544 GHMP kinases C terminal IX88_06160 PF00288 GHMP kinases N terminal domain IX88_06165 PF03550 Outer membrane lipoprotein LolB IX88_06175 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IX88_06175 PF01488 Shikimate / quinate 5-dehydrogenase IX88_06175 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IX88_06180 PF01807 CHC2 zinc finger IX88_06180 PF10410 DnaB-helicase binding domain of primase IX88_06180 PF08275 DNA primase catalytic core, N-terminal domain IX88_06180 PF08278 DNA primase DnaG DnaB-binding IX88_06185 PF13525 Outer membrane lipoprotein IX88_06190 PF00849 RNA pseudouridylate synthase IX88_06190 PF01479 S4 domain IX88_06200 PF03358 NADPH-dependent FMN reductase IX88_06205 PF01668 SmpB protein IX88_06210 PF01467 Cytidylyltransferase-like IX88_06215 PF00037 4Fe-4S binding domain IX88_06230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_06230 PF03466 LysR substrate binding domain IX88_06235 PF00180 Isocitrate/isopropylmalate dehydrogenase IX88_06240 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_06245 PF07859 alpha/beta hydrolase fold IX88_06250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_06250 PF00355 Rieske [2Fe-2S] domain IX88_06255 PF00171 Aldehyde dehydrogenase family IX88_06260 PF00970 Oxidoreductase FAD-binding domain IX88_06260 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_06260 PF00175 Oxidoreductase NAD-binding domain IX88_06275 PF02540 NAD synthase IX88_06275 PF00795 Carbon-nitrogen hydrolase IX88_06285 PF02678 Pirin IX88_06285 PF05726 Pirin C-terminal cupin domain IX88_06295 PF00109 Beta-ketoacyl synthase, N-terminal domain IX88_06295 PF02801 Beta-ketoacyl synthase, C-terminal domain IX88_06305 PF00164 Ribosomal protein S12/S23 IX88_06310 PF00177 Ribosomal protein S7p/S5e IX88_06315 PF03144 Elongation factor Tu domain 2 IX88_06315 PF00679 Elongation factor G C-terminus IX88_06315 PF14492 Elongation Factor G, domain II IX88_06315 PF03764 Elongation factor G, domain IV IX88_06315 PF00009 Elongation factor Tu GTP binding domain IX88_06320 PF03144 Elongation factor Tu domain 2 IX88_06320 PF00009 Elongation factor Tu GTP binding domain IX88_06320 PF03143 Elongation factor Tu C-terminal domain IX88_06335 PF00583 Acetyltransferase (GNAT) family IX88_06340 PF04377 Arginine-tRNA-protein transferase, C terminus IX88_06340 PF04376 Arginine-tRNA-protein transferase, N terminus IX88_06345 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IX88_06350 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_06355 PF09397 Ftsk gamma domain IX88_06355 PF17854 FtsK alpha domain IX88_06355 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IX88_06355 PF01580 FtsK/SpoIIIE family IX88_06360 PF01810 LysE type translocator IX88_06370 PF03776 Septum formation topological specificity factor MinE IX88_06375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IX88_06380 PF03775 Septum formation inhibitor MinC, C-terminal domain IX88_06390 PF01553 Acyltransferase IX88_06395 PF13488 Glycine zipper IX88_06395 PF00691 OmpA family IX88_06400 PF13361 UvrD-like helicase C-terminal domain IX88_06400 PF00580 UvrD/REP helicase N-terminal domain IX88_06405 PF00692 dUTPase IX88_06410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_06410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_06410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_06410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_06415 PF00696 Amino acid kinase family IX88_06425 PF13230 Glutamine amidotransferases class-II IX88_06430 PF01814 Hemerythrin HHE cation binding domain IX88_06440 PF03658 RnfH family Ubiquitin IX88_06445 PF04355 SmpA / OmlA family IX88_06450 PF01475 Ferric uptake regulator family IX88_06455 PF00437 Type II/IV secretion system protein IX88_06460 PF00437 Type II/IV secretion system protein IX88_06465 PF01168 Alanine racemase, N-terminal domain IX88_06480 PF12320 Type 5 capsule protein repressor C-terminal domain IX88_06480 PF00149 Calcineurin-like phosphoesterase IX88_06500 PF08338 Domain of unknown function (DUF1731) IX88_06500 PF01370 NAD dependent epimerase/dehydratase family IX88_06505 PF01266 FAD dependent oxidoreductase IX88_06510 PF00490 Delta-aminolevulinic acid dehydratase IX88_06515 PF03061 Thioesterase superfamily IX88_06520 PF13533 Biotin-lipoyl like IX88_06525 PF07690 Major Facilitator Superfamily IX88_06535 PF12161 HsdM N-terminal domain IX88_06535 PF02384 N-6 DNA Methylase IX88_06555 PF08463 EcoEI R protein C-terminal IX88_06555 PF04851 Type III restriction enzyme, res subunit IX88_06555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IX88_06555 PF00271 Helicase conserved C-terminal domain IX88_06585 PF00083 Sugar (and other) transporter IX88_06590 PF00701 Dihydrodipicolinate synthetase family IX88_06620 PF13520 Amino acid permease IX88_06625 PF02574 Homocysteine S-methyltransferase IX88_06635 PF06039 Malate:quinone oxidoreductase (Mqo) IX88_06640 PF00732 GMC oxidoreductase IX88_06640 PF05199 GMC oxidoreductase IX88_06645 PF00171 Aldehyde dehydrogenase family IX88_06650 PF13977 BetI-type transcriptional repressor, C-terminal IX88_06650 PF00440 Bacterial regulatory proteins, tetR family IX88_06655 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_06660 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_06670 PF03061 Thioesterase superfamily IX88_06680 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX88_06680 PF07683 Cobalamin synthesis protein cobW C-terminal domain IX88_06685 PF00375 Sodium:dicarboxylate symporter family IX88_06690 PF07152 YaeQ protein IX88_06695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_06700 PF01522 Polysaccharide deacetylase IX88_06700 PF14883 Hypothetical glycosyl hydrolase family 13 IX88_06705 PF00535 Glycosyl transferase family 2 IX88_06715 PF00378 Enoyl-CoA hydratase/isomerase IX88_06730 PF09339 IclR helix-turn-helix domain IX88_06730 PF01614 Bacterial transcriptional regulator IX88_06735 PF00355 Rieske [2Fe-2S] domain IX88_06745 PF00355 Rieske [2Fe-2S] domain IX88_06755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_06760 PF14759 Reductase C-terminal IX88_06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_06765 PF07690 Major Facilitator Superfamily IX88_06775 PF12697 Alpha/beta hydrolase family IX88_06785 PF01958 Domain of unknown function DUF108 IX88_06785 PF03447 Homoserine dehydrogenase, NAD binding domain IX88_06790 PF00171 Aldehyde dehydrogenase family IX88_06795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX88_06795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX88_06795 PF00205 Thiamine pyrophosphate enzyme, central domain IX88_06805 PF07690 Major Facilitator Superfamily IX88_06810 PF01327 Polypeptide deformylase IX88_06815 PF04960 Glutaminase IX88_06820 PF02311 AraC-like ligand binding domain IX88_06820 PF12833 Helix-turn-helix domain IX88_06825 PF07690 Major Facilitator Superfamily IX88_06830 PF01263 Aldose 1-epimerase IX88_06840 PF03466 LysR substrate binding domain IX88_06840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_06850 PF07690 Major Facilitator Superfamily IX88_06855 PF00456 Transketolase, thiamine diphosphate binding domain IX88_06860 PF02780 Transketolase, C-terminal domain IX88_06860 PF02779 Transketolase, pyrimidine binding domain IX88_06870 PF02574 Homocysteine S-methyltransferase IX88_06870 PF02965 Vitamin B12 dependent methionine synthase, activation domain IX88_06870 PF02607 B12 binding domain IX88_06870 PF00809 Pterin binding enzyme IX88_06870 PF02310 B12 binding domain IX88_06880 PF01384 Phosphate transporter family IX88_06885 PF00291 Pyridoxal-phosphate dependent enzyme IX88_06900 PF03781 Sulfatase-modifying factor enzyme 1 IX88_06905 PF00884 Sulfatase IX88_06915 PF01521 Iron-sulphur cluster biosynthesis IX88_06915 PF01106 NifU-like domain IX88_06920 PF00593 TonB dependent receptor IX88_06920 PF07715 TonB-dependent Receptor Plug Domain IX88_06930 PF00561 alpha/beta hydrolase fold IX88_06935 PF00484 Carbonic anhydrase IX88_06940 PF13472 GDSL-like Lipase/Acylhydrolase family IX88_06945 PF00005 ABC transporter IX88_06955 PF01694 Rhomboid family IX88_06960 PF00912 Transglycosylase IX88_06965 PF13089 Polyphosphate kinase N-terminal domain IX88_06965 PF13090 Polyphosphate kinase C-terminal domain 2 IX88_06965 PF02503 Polyphosphate kinase middle domain IX88_06965 PF17941 Polyphosphate kinase C-terminal domain 1 IX88_06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_06975 PF03466 LysR substrate binding domain IX88_06980 PF00561 alpha/beta hydrolase fold IX88_06985 PF18113 Rubredoxin binding C-terminal domain IX88_06985 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_06990 PF00301 Rubredoxin IX88_07005 PF00152 tRNA synthetases class II (D, K and N) IX88_07005 PF01336 OB-fold nucleic acid binding domain IX88_07010 PF14052 Capsule assembly protein Wzi IX88_07020 PF01507 Phosphoadenosine phosphosulfate reductase family IX88_07025 PF00009 Elongation factor Tu GTP binding domain IX88_07040 PF03600 Citrate transporter IX88_07045 PF00571 CBS domain IX88_07045 PF01595 Cyclin M transmembrane N-terminal domain IX88_07045 PF03471 Transporter associated domain IX88_07050 PF03466 LysR substrate binding domain IX88_07050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_07055 PF00463 Isocitrate lyase family IX88_07075 PF01774 UreD urease accessory protein IX88_07080 PF00547 Urease, gamma subunit IX88_07085 PF00699 Urease beta subunit IX88_07090 PF01979 Amidohydrolase family IX88_07090 PF00449 Urease alpha-subunit, N-terminal domain IX88_07095 PF05194 UreE urease accessory protein, C-terminal domain IX88_07095 PF02814 UreE urease accessory protein, N-terminal domain IX88_07100 PF01730 UreF IX88_07105 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX88_07120 PF00905 Penicillin binding protein transpeptidase domain IX88_07120 PF03717 Penicillin-binding Protein dimerisation domain IX88_07135 PF05191 Adenylate kinase, active site lid IX88_07145 PF10576 Iron-sulfur binding domain of endonuclease III IX88_07145 PF00730 HhH-GPD superfamily base excision DNA repair protein IX88_07145 PF00633 Helix-hairpin-helix motif IX88_07150 PF04060 Putative Fe-S cluster IX88_07155 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IX88_07155 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_07165 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IX88_07170 PF02590 Predicted SPOUT methyltransferase IX88_07175 PF05362 Lon protease (S16) C-terminal proteolytic domain IX88_07175 PF02190 ATP-dependent protease La (LON) substrate-binding domain IX88_07175 PF00004 ATPase family associated with various cellular activities (AAA) IX88_07180 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_07180 PF05658 Head domain of trimeric autotransporter adhesin IX88_07180 PF03895 YadA-like membrane anchor domain IX88_07180 PF13018 Extended Signal Peptide of Type V secretion system IX88_07185 PF01389 OmpA-like transmembrane domain IX88_07185 PF00691 OmpA family IX88_07190 PF03895 YadA-like membrane anchor domain IX88_07190 PF05658 Head domain of trimeric autotransporter adhesin IX88_07190 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_07190 PF13018 Extended Signal Peptide of Type V secretion system IX88_07190 PF03895 YadA-like membrane anchor domain IX88_07190 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_07190 PF13018 Extended Signal Peptide of Type V secretion system IX88_07190 PF13018 Extended Signal Peptide of Type V secretion system IX88_07190 PF03895 YadA-like membrane anchor domain IX88_07190 PF05658 Head domain of trimeric autotransporter adhesin IX88_07190 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_07190 PF05658 Head domain of trimeric autotransporter adhesin IX88_07200 PF01812 5-formyltetrahydrofolate cyclo-ligase family IX88_07235 PF05195 Aminopeptidase P, N-terminal domain IX88_07235 PF00557 Metallopeptidase family M24 IX88_07240 PF01494 FAD binding domain IX88_07245 PF01494 FAD binding domain IX88_07255 PF13411 MerR HTH family regulatory protein IX88_07265 PF01810 LysE type translocator IX88_07270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_07270 PF03466 LysR substrate binding domain IX88_07280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IX88_07285 PF02021 Uncharacterised protein family UPF0102 IX88_07290 PF04972 BON domain IX88_07300 PF00293 NUDIX domain IX88_07300 PF09297 NADH pyrophosphatase zinc ribbon domain IX88_07310 PF00929 Exonuclease IX88_07315 PF01464 Transglycosylase SLT domain IX88_07315 PF01464 Transglycosylase SLT domain IX88_07315 PF01476 LysM domain IX88_07315 PF01476 LysM domain IX88_07320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IX88_07325 PF00528 Binding-protein-dependent transport system inner membrane component IX88_07330 PF12911 N-terminal TM domain of oligopeptide transport permease C IX88_07330 PF00528 Binding-protein-dependent transport system inner membrane component IX88_07335 PF00005 ABC transporter IX88_07335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IX88_07340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_07340 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_07355 PF00593 TonB dependent receptor IX88_07355 PF07715 TonB-dependent Receptor Plug Domain IX88_07365 PF00929 Exonuclease IX88_07370 PF01979 Amidohydrolase family IX88_07375 PF01590 GAF domain IX88_07375 PF00360 Phytochrome region IX88_07375 PF00563 EAL domain IX88_07375 PF00990 Diguanylate cyclase, GGDEF domain IX88_07380 PF00764 Arginosuccinate synthase IX88_07385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_07385 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_07395 PF00589 Phage integrase family IX88_07395 PF13356 Arm DNA-binding domain IX88_07425 PF00872 Transposase, Mutator family IX88_07485 PF13411 MerR HTH family regulatory protein IX88_07495 PF01252 Signal peptidase (SPase) II IX88_07505 PF09278 MerR, DNA binding IX88_07505 PF00376 MerR family regulatory protein IX88_07510 PF02411 MerT mercuric transport protein IX88_07520 PF03203 MerC mercury resistance protein IX88_07525 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_07525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_07525 PF00403 Heavy-metal-associated domain IX88_07530 PF13411 MerR HTH family regulatory protein IX88_07540 PF02661 Fic/DOC family IX88_07550 PF02384 N-6 DNA Methylase IX88_07555 PF01420 Type I restriction modification DNA specificity domain IX88_07575 PF00440 Bacterial regulatory proteins, tetR family IX88_07585 PF03180 NLPA lipoprotein IX88_07610 PF16671 Actin cross-linking domain IX88_07610 PF04717 Type VI secretion system, phage-baseplate injector IX88_07665 PF00324 Amino acid permease IX88_07670 PF01266 FAD dependent oxidoreductase IX88_07675 PF00324 Amino acid permease IX88_07690 PF00392 Bacterial regulatory proteins, gntR family IX88_07690 PF07729 FCD domain IX88_07700 PF00171 Aldehyde dehydrogenase family IX88_07710 PF00202 Aminotransferase class-III IX88_07715 PF04958 Arginine N-succinyltransferase beta subunit IX88_07720 PF00324 Amino acid permease IX88_07725 PF00171 Aldehyde dehydrogenase family IX88_07730 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX88_07730 PF12833 Helix-turn-helix domain IX88_07735 PF00892 EamA-like transporter family IX88_07740 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IX88_07740 PF08666 SAF domain IX88_07745 PF07690 Major Facilitator Superfamily IX88_07750 PF13378 Enolase C-terminal domain-like IX88_07755 PF00701 Dihydrodipicolinate synthetase family IX88_07760 PF00171 Aldehyde dehydrogenase family IX88_07765 PF00392 Bacterial regulatory proteins, gntR family IX88_07765 PF07729 FCD domain IX88_07770 PF07519 Tannase and feruloyl esterase IX88_07785 PF03573 outer membrane porin, OprD family IX88_07790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_07790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_07790 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_07800 PF00171 Aldehyde dehydrogenase family IX88_07805 PF00378 Enoyl-CoA hydratase/isomerase IX88_07810 PF07690 Major Facilitator Superfamily IX88_07825 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_07825 PF00175 Oxidoreductase NAD-binding domain IX88_07830 PF00355 Rieske [2Fe-2S] domain IX88_07835 PF07690 Major Facilitator Superfamily IX88_07840 PF03573 outer membrane porin, OprD family IX88_07845 PF05199 GMC oxidoreductase IX88_07850 PF07859 alpha/beta hydrolase fold IX88_07855 PF00106 short chain dehydrogenase IX88_07860 PF00743 Flavin-binding monooxygenase-like IX88_07865 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX88_07865 PF12833 Helix-turn-helix domain IX88_07870 PF04072 Leucine carboxyl methyltransferase IX88_07875 PF00743 Flavin-binding monooxygenase-like IX88_07880 PF00106 short chain dehydrogenase IX88_07890 PF00440 Bacterial regulatory proteins, tetR family IX88_07890 PF17932 Tetracyclin repressor-like, C-terminal domain IX88_07895 PF17954 Quercetinase C-terminal cupin domain IX88_07895 PF02678 Pirin IX88_07905 PF00106 short chain dehydrogenase IX88_07910 PF00743 Flavin-binding monooxygenase-like IX88_07920 PF00860 Permease family IX88_07925 PF00962 Adenosine/AMP deaminase IX88_07930 PF01292 Prokaryotic cytochrome b561 IX88_07940 PF01351 Ribonuclease HII IX88_07945 PF02599 Global regulator protein family IX88_07950 PF00696 Amino acid kinase family IX88_07950 PF01842 ACT domain IX88_07950 PF13840 ACT domain IX88_07955 PF01411 tRNA synthetases class II (A) IX88_07955 PF02272 DHHA1 domain IX88_07955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IX88_07960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IX88_07960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_07965 PF13393 Histidyl-tRNA synthetase IX88_07970 PF00709 Adenylosuccinate synthetase IX88_07985 PF00248 Aldo/keto reductase family IX88_07990 PF00027 Cyclic nucleotide-binding domain IX88_07990 PF13545 Crp-like helix-turn-helix domain IX88_07995 PF02566 OsmC-like protein IX88_08010 PF10431 C-terminal, D2-small domain, of ClpB protein IX88_08010 PF00004 ATPase family associated with various cellular activities (AAA) IX88_08010 PF02861 Clp amino terminal domain, pathogenicity island component IX88_08010 PF17871 AAA lid domain IX88_08010 PF07724 AAA domain (Cdc48 subfamily) IX88_08025 PF01170 Putative RNA methylase family UPF0020 IX88_08025 PF10672 S-adenosylmethionine-dependent methyltransferase IX88_08025 PF02926 THUMP domain IX88_08035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IX88_08035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IX88_08040 PF01979 Amidohydrolase family IX88_08045 PF13488 Glycine zipper IX88_08045 PF00691 OmpA family IX88_08055 PF00043 Glutathione S-transferase, C-terminal domain IX88_08055 PF13417 Glutathione S-transferase, N-terminal domain IX88_08060 PF02390 Putative methyltransferase IX88_08070 PF00043 Glutathione S-transferase, C-terminal domain IX88_08070 PF02798 Glutathione S-transferase, N-terminal domain IX88_08080 PF13192 Thioredoxin domain IX88_08080 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_08100 PF10417 C-terminal domain of 1-Cys peroxiredoxin IX88_08100 PF00578 AhpC/TSA family IX88_08105 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IX88_08105 PF04408 Helicase associated domain (HA2) IX88_08105 PF11898 Domain of unknown function (DUF3418) IX88_08105 PF00270 DEAD/DEAH box helicase IX88_08105 PF00271 Helicase conserved C-terminal domain IX88_08110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IX88_08110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IX88_08120 PF07690 Major Facilitator Superfamily IX88_08125 PF03594 Benzoate membrane transport protein IX88_08130 PF00106 short chain dehydrogenase IX88_08135 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_08135 PF00175 Oxidoreductase NAD-binding domain IX88_08135 PF00970 Oxidoreductase FAD-binding domain IX88_08140 PF00866 Ring hydroxylating beta subunit IX88_08145 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_08145 PF00355 Rieske [2Fe-2S] domain IX88_08150 PF03466 LysR substrate binding domain IX88_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_08155 PF00403 Heavy-metal-associated domain IX88_08160 PF00403 Heavy-metal-associated domain IX88_08165 PF09278 MerR, DNA binding IX88_08165 PF00376 MerR family regulatory protein IX88_08200 PF02601 Exonuclease VII, large subunit IX88_08200 PF13742 OB-fold nucleic acid binding domain IX88_08235 PF01810 LysE type translocator IX88_08240 PF00313 'Cold-shock' DNA-binding domain IX88_08250 PF03807 NADP oxidoreductase coenzyme F420-dependent IX88_08250 PF14748 Pyrroline-5-carboxylate reductase dimerisation IX88_08270 PF07690 Major Facilitator Superfamily IX88_08275 PF01638 HxlR-like helix-turn-helix IX88_08310 PF09190 DALR domain IX88_08310 PF01406 tRNA synthetases class I (C) catalytic domain IX88_08315 PF01380 SIS domain IX88_08315 PF00571 CBS domain IX88_08330 PF03968 OstA-like protein IX88_08335 PF12399 Branched-chain amino acid ATP-binding cassette transporter IX88_08335 PF00005 ABC transporter IX88_08340 PF02321 Outer membrane efflux protein IX88_08345 PF00664 ABC transporter transmembrane region IX88_08345 PF00005 ABC transporter IX88_08345 PF03412 Peptidase C39 family IX88_08355 PF01205 Uncharacterized protein family UPF0029 IX88_08360 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_08370 PF01596 O-methyltransferase IX88_08380 PF00037 4Fe-4S binding domain IX88_08380 PF11953 Domain of unknown function (DUF3470) IX88_08390 PF00488 MutS domain V IX88_08390 PF05190 MutS family domain IV IX88_08390 PF05192 MutS domain III IX88_08390 PF05188 MutS domain II IX88_08390 PF01624 MutS domain I IX88_08395 PF01037 Lrp/AsnC ligand binding domain IX88_08400 PF00892 EamA-like transporter family IX88_08405 PF03707 Bacterial signalling protein N terminal repeat IX88_08405 PF00990 Diguanylate cyclase, GGDEF domain IX88_08405 PF00563 EAL domain IX88_08410 PF03279 Bacterial lipid A biosynthesis acyltransferase IX88_08420 PF07690 Major Facilitator Superfamily IX88_08440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_08440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_08460 PF16671 Actin cross-linking domain IX88_08460 PF04717 Type VI secretion system, phage-baseplate injector IX88_08495 PF03466 LysR substrate binding domain IX88_08495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_08500 PF01566 Natural resistance-associated macrophage protein IX88_08505 PF03746 LamB/YcsF family IX88_08510 PF07286 Protein of unknown function (DUF1445) IX88_08520 PF02785 Biotin carboxylase C-terminal domain IX88_08520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_08520 PF00289 Biotin carboxylase, N-terminal domain IX88_08520 PF00364 Biotin-requiring enzyme IX88_08525 PF00654 Voltage gated chloride channel IX88_08530 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX88_08530 PF17287 POTRA domain IX88_08530 PF08479 POTRA domain, ShlB-type IX88_08535 PF13332 Hemagglutinin repeat IX88_08535 PF05860 haemagglutination activity domain IX88_08535 PF04829 Pre-toxin domain with VENN motif IX88_08535 PF13018 Extended Signal Peptide of Type V secretion system IX88_08555 PF13737 Transposase DDE domain IX88_08585 PF12833 Helix-turn-helix domain IX88_08585 PF06719 AraC-type transcriptional regulator N-terminus IX88_08600 PF02515 CoA-transferase family III IX88_08605 PF00682 HMGL-like IX88_08610 PF07690 Major Facilitator Superfamily IX88_08615 PF00199 Catalase IX88_08620 PF01292 Prokaryotic cytochrome b561 IX88_08625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_08625 PF03466 LysR substrate binding domain IX88_08630 PF02525 Flavodoxin-like fold IX88_08635 PF09339 IclR helix-turn-helix domain IX88_08635 PF01614 Bacterial transcriptional regulator IX88_08640 PF01494 FAD binding domain IX88_08645 PF07702 UTRA domain IX88_08645 PF00392 Bacterial regulatory proteins, gntR family IX88_08655 PF00005 ABC transporter IX88_08655 PF08402 TOBE domain IX88_08665 PF01266 FAD dependent oxidoreductase IX88_08670 PF00266 Aminotransferase class-V IX88_08675 PF13419 Haloacid dehalogenase-like hydrolase IX88_08680 PF07690 Major Facilitator Superfamily IX88_08685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_08685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_08685 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_08690 PF02515 CoA-transferase family III IX88_08695 PF09339 IclR helix-turn-helix domain IX88_08700 PF00378 Enoyl-CoA hydratase/isomerase IX88_08705 PF03060 Nitronate monooxygenase IX88_08710 PF07690 Major Facilitator Superfamily IX88_08715 PF09339 IclR helix-turn-helix domain IX88_08720 PF00108 Thiolase, N-terminal domain IX88_08720 PF02803 Thiolase, C-terminal domain IX88_08725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_08725 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IX88_08725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_08735 PF00378 Enoyl-CoA hydratase/isomerase IX88_08740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_08740 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_08740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_08745 PF07690 Major Facilitator Superfamily IX88_08750 PF01144 Coenzyme A transferase IX88_08755 PF01144 Coenzyme A transferase IX88_08765 PF07690 Major Facilitator Superfamily IX88_08775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_08775 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_08775 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_08775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_08790 PF03466 LysR substrate binding domain IX88_08790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_08795 PF00682 HMGL-like IX88_08800 PF02785 Biotin carboxylase C-terminal domain IX88_08800 PF00289 Biotin carboxylase, N-terminal domain IX88_08800 PF00364 Biotin-requiring enzyme IX88_08800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_08805 PF00378 Enoyl-CoA hydratase/isomerase IX88_08810 PF01039 Carboxyl transferase domain IX88_08815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_08815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_08815 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_08820 PF00440 Bacterial regulatory proteins, tetR family IX88_08825 PF00501 AMP-binding enzyme IX88_08825 PF13193 AMP-binding enzyme C-terminal domain IX88_08845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_08845 PF03466 LysR substrate binding domain IX88_08880 PF00994 Probable molybdopterin binding domain IX88_08880 PF18146 Damage-inducible protein CinA KH domain IX88_08880 PF02464 Competence-damaged protein IX88_08890 PF06628 Catalase-related immune-responsive IX88_08890 PF00199 Catalase IX88_08890 PF18011 C-terminal domain found in long catalases IX88_08915 PF00717 Peptidase S24-like IX88_08925 PF13404 AsnC-type helix-turn-helix domain IX88_08925 PF01037 Lrp/AsnC ligand binding domain IX88_08935 PF00072 Response regulator receiver domain IX88_08935 PF09308 LuxQ, periplasmic IX88_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_08935 PF00512 His Kinase A (phospho-acceptor) domain IX88_08940 PF00072 Response regulator receiver domain IX88_08950 PF00528 Binding-protein-dependent transport system inner membrane component IX88_08955 PF00528 Binding-protein-dependent transport system inner membrane component IX88_08960 PF00005 ABC transporter IX88_08965 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX88_08970 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX88_08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_08975 PF03466 LysR substrate binding domain IX88_08980 PF01810 LysE type translocator IX88_08985 PF00266 Aminotransferase class-V IX88_08995 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_09000 PF00581 Rhodanese-like domain IX88_09010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09010 PF03466 LysR substrate binding domain IX88_09015 PF02798 Glutathione S-transferase, N-terminal domain IX88_09020 PF02798 Glutathione S-transferase, N-terminal domain IX88_09020 PF14834 Glutathione S-transferase, C-terminal domain IX88_09025 PF03466 LysR substrate binding domain IX88_09025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09030 PF03788 LrgA family IX88_09035 PF04172 LrgB-like family IX88_09040 PF00155 Aminotransferase class I and II IX88_09040 PF00392 Bacterial regulatory proteins, gntR family IX88_09055 PF07690 Major Facilitator Superfamily IX88_09065 PF03466 LysR substrate binding domain IX88_09065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09070 PF16957 Malonate decarboxylase, alpha subunit, transporter IX88_09075 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IX88_09080 PF06857 Malonate decarboxylase delta subunit (MdcD) IX88_09085 PF01039 Carboxyl transferase domain IX88_09095 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG IX88_09100 PF00698 Acyl transferase domain IX88_09115 PF03466 LysR substrate binding domain IX88_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09120 PF00392 Bacterial regulatory proteins, gntR family IX88_09120 PF00155 Aminotransferase class I and II IX88_09130 PF02322 Cytochrome bd terminal oxidase subunit II IX88_09135 PF01654 Cytochrome bd terminal oxidase subunit I IX88_09150 PF00296 Luciferase-like monooxygenase IX88_09155 PF00083 Sugar (and other) transporter IX88_09165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IX88_09170 PF00005 ABC transporter IX88_09175 PF00528 Binding-protein-dependent transport system inner membrane component IX88_09180 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IX88_09185 PF01177 Asp/Glu/Hydantoin racemase IX88_09190 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX88_09200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09200 PF03466 LysR substrate binding domain IX88_09210 PF01979 Amidohydrolase family IX88_09210 PF13382 Adenine deaminase C-terminal domain IX88_09220 PF03960 ArsC family IX88_09225 PF01022 Bacterial regulatory protein, arsR family IX88_09230 PF01758 Sodium Bile acid symporter family IX88_09235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09235 PF03466 LysR substrate binding domain IX88_09250 PF13192 Thioredoxin domain IX88_09250 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_09265 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_09270 PF00588 SpoU rRNA Methylase family IX88_09275 PF01336 OB-fold nucleic acid binding domain IX88_09275 PF02811 PHP domain IX88_09275 PF14579 Helix-hairpin-helix motif IX88_09275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IX88_09275 PF07733 Bacterial DNA polymerase III alpha NTPase domain IX88_09280 PF17763 Glutaminase/Asparaginase C-terminal domain IX88_09280 PF00710 Asparaginase, N-terminal IX88_09285 PF00375 Sodium:dicarboxylate symporter family IX88_09290 PF00155 Aminotransferase class I and II IX88_09295 PF01641 SelR domain IX88_09300 PF00255 Glutathione peroxidase IX88_09305 PF12833 Helix-turn-helix domain IX88_09305 PF12852 Cupin IX88_09315 PF00155 Aminotransferase class I and II IX88_09320 PF01966 HD domain IX88_09320 PF08335 GlnD PII-uridylyltransferase IX88_09320 PF01909 Nucleotidyltransferase domain IX88_09325 PF02222 ATP-grasp domain IX88_09335 PF05437 Branched-chain amino acid transport protein (AzlD) IX88_09340 PF03591 AzlC protein IX88_09365 PF06071 Protein of unknown function (DUF933) IX88_09365 PF01926 50S ribosome-binding GTPase IX88_09370 PF00528 Binding-protein-dependent transport system inner membrane component IX88_09375 PF00005 ABC transporter IX88_09375 PF09383 NIL domain IX88_09380 PF03180 NLPA lipoprotein IX88_09385 PF03180 NLPA lipoprotein IX88_09390 PF00296 Luciferase-like monooxygenase IX88_09400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_09400 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_09415 PF00528 Binding-protein-dependent transport system inner membrane component IX88_09420 PF00528 Binding-protein-dependent transport system inner membrane component IX88_09425 PF00005 ABC transporter IX88_09435 PF01037 Lrp/AsnC ligand binding domain IX88_09440 PF01709 Transcriptional regulator IX88_09450 PF00440 Bacterial regulatory proteins, tetR family IX88_09490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_09490 PF03466 LysR substrate binding domain IX88_09500 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX88_09510 PF00892 EamA-like transporter family IX88_09530 PF13954 PapC N-terminal domain IX88_09530 PF13953 PapC C-terminal domain IX88_09530 PF00577 Outer membrane usher protein IX88_09535 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IX88_09535 PF02753 Pili assembly chaperone PapD, C-terminal domain IX88_09540 PF16970 Type-1 fimbrial protein, A IX88_09555 PF04055 Radical SAM superfamily IX88_09555 PF06968 Biotin and Thiamin Synthesis associated domain IX88_09560 PF08331 Domain of unknown function (DUF1730) IX88_09565 PF01256 Carbohydrate kinase IX88_09565 PF03853 YjeF-related protein N-terminus IX88_09570 PF02075 Crossover junction endodeoxyribonuclease RuvC IX88_09585 PF00905 Penicillin binding protein transpeptidase domain IX88_09605 PF02772 S-adenosylmethionine synthetase, central domain IX88_09605 PF02773 S-adenosylmethionine synthetase, C-terminal domain IX88_09605 PF00438 S-adenosylmethionine synthetase, N-terminal domain IX88_09610 PF02779 Transketolase, pyrimidine binding domain IX88_09610 PF00456 Transketolase, thiamine diphosphate binding domain IX88_09610 PF02780 Transketolase, C-terminal domain IX88_09620 PF04264 YceI-like domain IX88_09630 PF09992 Phosphodiester glycosidase IX88_09640 PF05958 tRNA (Uracil-5-)-methyltransferase IX88_09645 PF04229 GrpB protein IX88_09650 PF14850 DNA-binding domain of Proline dehydrogenase IX88_09650 PF00171 Aldehyde dehydrogenase family IX88_09650 PF01619 Proline dehydrogenase IX88_09650 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IX88_09660 PF01037 Lrp/AsnC ligand binding domain IX88_09665 PF00474 Sodium:solute symporter family IX88_09670 PF02146 Sir2 family IX88_09675 PF01597 Glycine cleavage H-protein IX88_09680 PF12833 Helix-turn-helix domain IX88_09680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX88_09690 PF00664 ABC transporter transmembrane region IX88_09690 PF00005 ABC transporter IX88_09695 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IX88_09700 PF06912 Protein of unknown function (DUF1275) IX88_09705 PF00375 Sodium:dicarboxylate symporter family IX88_09720 PF08007 Cupin superfamily protein IX88_09725 PF02545 Maf-like protein IX88_09735 PF00162 Phosphoglycerate kinase IX88_09745 PF01116 Fructose-bisphosphate aldolase class-II IX88_09750 PF09312 SurA N-terminal domain IX88_09750 PF00639 PPIC-type PPIASE domain IX88_09755 PF03968 OstA-like protein IX88_09755 PF04453 LPS transport system D IX88_09760 PF01636 Phosphotransferase enzyme family IX88_09765 PF00483 Nucleotidyl transferase IX88_09770 PF02527 rRNA small subunit methyltransferase G IX88_09775 PF13614 AAA domain IX88_09780 PF02195 ParB-like nuclease domain IX88_09780 PF17762 HTH domain found in ParB protein IX88_09785 PF01618 MotA/TolQ/ExbB proton channel family IX88_09795 PF00005 ABC transporter IX88_09795 PF00664 ABC transporter transmembrane region IX88_09800 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IX88_09805 PF02348 Cytidylyltransferase IX88_09810 PF09115 DNA polymerase III, delta subunit, C terminal IX88_09820 PF01026 TatD related DNase IX88_09835 PF07963 Prokaryotic N-terminal methylation motif IX88_09835 PF02501 Type II secretion system (T2SS), protein I IX88_09840 PF07963 Prokaryotic N-terminal methylation motif IX88_09840 PF11612 Type II secretion system (T2SS), protein J IX88_09845 PF03934 Type II secretion system (T2SS), protein K IX88_09855 PF03167 Uracil DNA glycosylase superfamily IX88_09865 PF14437 MafB19-like deaminase IX88_09875 PF02224 Cytidylate kinase IX88_09880 PF00575 S1 RNA binding domain IX88_09885 PF00216 Bacterial DNA-binding protein IX88_09895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IX88_09905 PF00743 Flavin-binding monooxygenase-like IX88_09915 PF03969 AFG1-like ATPase IX88_09920 PF01274 Malate synthase IX88_09925 PF02472 Biopolymer transport protein ExbD/TolR IX88_09930 PF02472 Biopolymer transport protein ExbD/TolR IX88_09935 PF01618 MotA/TolQ/ExbB proton channel family IX88_09945 PF00593 TonB dependent receptor IX88_09945 PF07715 TonB-dependent Receptor Plug Domain IX88_09965 PF01432 Peptidase family M3 IX88_09970 PF00528 Binding-protein-dependent transport system inner membrane component IX88_09975 PF00528 Binding-protein-dependent transport system inner membrane component IX88_09980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IX88_09980 PF00005 ABC transporter IX88_09995 PF00459 Inositol monophosphatase family IX88_10005 PF01649 Ribosomal protein S20 IX88_10010 PF13460 NAD(P)H-binding IX88_10015 PF03737 Aldolase/RraA IX88_10035 PF02559 CarD-like/TRCF domain IX88_10035 PF00270 DEAD/DEAH box helicase IX88_10035 PF00271 Helicase conserved C-terminal domain IX88_10035 PF03461 TRCF domain IX88_10035 PF17757 UvrB interaction domain IX88_10045 PF00211 Adenylate and Guanylate cyclase catalytic domain IX88_10050 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_10055 PF00012 Hsp70 protein IX88_10060 PF07743 HSCB C-terminal oligomerisation domain IX88_10060 PF00226 DnaJ domain IX88_10065 PF01521 Iron-sulphur cluster biosynthesis IX88_10070 PF01592 NifU-like N terminal domain IX88_10075 PF00266 Aminotransferase class-V IX88_10080 PF02082 Transcriptional regulator IX88_10095 PF00216 Bacterial DNA-binding protein IX88_10100 PF09312 SurA N-terminal domain IX88_10100 PF00639 PPIC-type PPIASE domain IX88_10105 PF12833 Helix-turn-helix domain IX88_10105 PF12852 Cupin IX88_10110 PF00487 Fatty acid desaturase IX88_10115 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_10115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_10115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_10120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_10120 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_10120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_10125 PF03109 ABC1 family IX88_10135 PF04073 Aminoacyl-tRNA editing domain IX88_10145 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IX88_10150 PF07690 Major Facilitator Superfamily IX88_10155 PF06276 Ferric iron reductase FhuF-like transporter IX88_10155 PF04183 IucA / IucC family IX88_10160 PF04183 IucA / IucC family IX88_10160 PF06276 Ferric iron reductase FhuF-like transporter IX88_10170 PF03737 Aldolase/RraA IX88_10175 PF00593 TonB dependent receptor IX88_10175 PF07715 TonB-dependent Receptor Plug Domain IX88_10200 PF13419 Haloacid dehalogenase-like hydrolase IX88_10215 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IX88_10220 PF02277 Phosphoribosyltransferase IX88_10225 PF00300 Histidine phosphatase superfamily (branch 1) IX88_10235 PF02654 Cobalamin-5-phosphate synthase IX88_10240 PF00793 DAHP synthetase I family IX88_10245 PF01925 Sulfite exporter TauE/SafE IX88_10265 PF00593 TonB dependent receptor IX88_10265 PF07715 TonB-dependent Receptor Plug Domain IX88_10270 PF02684 Lipid-A-disaccharide synthetase IX88_10280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_10285 PF00005 ABC transporter IX88_10320 PF01230 HIT domain IX88_10350 PF08241 Methyltransferase domain IX88_10355 PF00561 alpha/beta hydrolase fold IX88_10360 PF01053 Cys/Met metabolism PLP-dependent enzyme IX88_10370 PF02575 YbaB/EbfC DNA-binding family IX88_10375 PF13662 Toprim domain IX88_10375 PF02132 RecR protein IX88_10380 PF00570 HRDC domain IX88_10380 PF01612 3'-5' exonuclease IX88_10400 PF05166 YcgL domain IX88_10410 PF00004 ATPase family associated with various cellular activities (AAA) IX88_10410 PF17862 AAA+ lid domain IX88_10410 PF01434 Peptidase family M41 IX88_10420 PF00291 Pyridoxal-phosphate dependent enzyme IX88_10425 PF05175 Methyltransferase small domain IX88_10430 PF01264 Chorismate synthase IX88_10435 PF08448 PAS fold IX88_10435 PF00990 Diguanylate cyclase, GGDEF domain IX88_10450 PF04055 Radical SAM superfamily IX88_10455 PF00676 Dehydrogenase E1 component IX88_10460 PF02780 Transketolase, C-terminal domain IX88_10460 PF02779 Transketolase, pyrimidine binding domain IX88_10465 PF00364 Biotin-requiring enzyme IX88_10465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX88_10465 PF02817 e3 binding domain IX88_10470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_10470 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_10475 PF00106 short chain dehydrogenase IX88_10480 PF00107 Zinc-binding dehydrogenase IX88_10480 PF08240 Alcohol dehydrogenase GroES-like domain IX88_10485 PF01062 Bestrophin, RFP-TM, chloride channel IX88_10490 PF00158 Sigma-54 interaction domain IX88_10490 PF00072 Response regulator receiver domain IX88_10490 PF02954 Bacterial regulatory protein, Fis family IX88_10495 PF04273 Putative phosphatase (DUF442) IX88_10495 PF00753 Metallo-beta-lactamase superfamily IX88_10500 PF00753 Metallo-beta-lactamase superfamily IX88_10500 PF04273 Putative phosphatase (DUF442) IX88_10505 PF01925 Sulfite exporter TauE/SafE IX88_10520 PF12833 Helix-turn-helix domain IX88_10520 PF06445 GyrI-like small molecule binding domain IX88_10525 PF01638 HxlR-like helix-turn-helix IX88_10530 PF02525 Flavodoxin-like fold IX88_10555 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IX88_10565 PF00083 Sugar (and other) transporter IX88_10570 PF07715 TonB-dependent Receptor Plug Domain IX88_10570 PF00593 TonB dependent receptor IX88_10575 PF10415 Fumarase C C-terminus IX88_10575 PF00206 Lyase IX88_10590 PF03466 LysR substrate binding domain IX88_10590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_10595 PF03466 LysR substrate binding domain IX88_10600 PF00108 Thiolase, N-terminal domain IX88_10600 PF02803 Thiolase, C-terminal domain IX88_10605 PF02667 Short chain fatty acid transporter IX88_10610 PF01144 Coenzyme A transferase IX88_10615 PF01144 Coenzyme A transferase IX88_10620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_10620 PF03466 LysR substrate binding domain IX88_10640 PF00440 Bacterial regulatory proteins, tetR family IX88_10660 PF06719 AraC-type transcriptional regulator N-terminus IX88_10660 PF12833 Helix-turn-helix domain IX88_10665 PF07690 Major Facilitator Superfamily IX88_10670 PF01738 Dienelactone hydrolase family IX88_10685 PF01613 Flavin reductase like domain IX88_10695 PF14525 AraC-binding-like domain IX88_10695 PF12833 Helix-turn-helix domain IX88_10700 PF00175 Oxidoreductase NAD-binding domain IX88_10700 PF00970 Oxidoreductase FAD-binding domain IX88_10700 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_10705 PF00866 Ring hydroxylating beta subunit IX88_10710 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_10710 PF00355 Rieske [2Fe-2S] domain IX88_10715 PF03459 TOBE domain IX88_10715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_10725 PF00528 Binding-protein-dependent transport system inner membrane component IX88_10730 PF03459 TOBE domain IX88_10730 PF00005 ABC transporter IX88_10735 PF00106 short chain dehydrogenase IX88_10740 PF00857 Isochorismatase family IX88_10740 PF00550 Phosphopantetheine attachment site IX88_10750 PF00149 Calcineurin-like phosphoesterase IX88_10755 PF13090 Polyphosphate kinase C-terminal domain 2 IX88_10755 PF13089 Polyphosphate kinase N-terminal domain IX88_10755 PF17941 Polyphosphate kinase C-terminal domain 1 IX88_10755 PF02503 Polyphosphate kinase middle domain IX88_10760 PF12706 Beta-lactamase superfamily domain IX88_10765 PF03070 TENA/THI-4/PQQC family IX88_10770 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IX88_10775 PF13186 Iron-sulfur cluster-binding domain IX88_10775 PF04055 Radical SAM superfamily IX88_10780 PF01244 Membrane dipeptidase (Peptidase family M19) IX88_10800 PF13091 PLD-like domain IX88_10815 PF00199 Catalase IX88_10825 PF00107 Zinc-binding dehydrogenase IX88_10825 PF08240 Alcohol dehydrogenase GroES-like domain IX88_10840 PF13954 PapC N-terminal domain IX88_10840 PF00577 Outer membrane usher protein IX88_10840 PF13953 PapC C-terminal domain IX88_10845 PF02753 Pili assembly chaperone PapD, C-terminal domain IX88_10845 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IX88_10850 PF16970 Type-1 fimbrial protein, A IX88_10925 PF17760 UvrA interaction domain IX88_10925 PF17755 UvrA DNA-binding domain IX88_10925 PF00005 ABC transporter IX88_10930 PF00873 AcrB/AcrD/AcrF family IX88_10935 PF00529 HlyD membrane-fusion protein of T1SS IX88_10935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_10940 PF00072 Response regulator receiver domain IX88_10940 PF00486 Transcriptional regulatory protein, C terminal IX88_10965 PF12833 Helix-turn-helix domain IX88_10965 PF02311 AraC-like ligand binding domain IX88_10970 PF12146 Serine aminopeptidase, S33 IX88_10990 PF13673 Acetyltransferase (GNAT) domain IX88_11020 PF02824 TGS domain IX88_11020 PF04607 Region found in RelA / SpoT proteins IX88_11020 PF13291 ACT domain IX88_11030 PF01975 Survival protein SurE IX88_11055 PF07690 Major Facilitator Superfamily IX88_11060 PF13533 Biotin-lipoyl like IX88_11080 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IX88_11085 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IX88_11085 PF14572 Phosphoribosyl synthetase-associated domain IX88_11105 PF00005 ABC transporter IX88_11120 PF08240 Alcohol dehydrogenase GroES-like domain IX88_11120 PF00107 Zinc-binding dehydrogenase IX88_11135 PF12833 Helix-turn-helix domain IX88_11135 PF06719 AraC-type transcriptional regulator N-terminus IX88_11140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX88_11140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX88_11145 PF07690 Major Facilitator Superfamily IX88_11150 PF01370 NAD dependent epimerase/dehydratase family IX88_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_11155 PF03466 LysR substrate binding domain IX88_11165 PF00920 Dehydratase family IX88_11170 PF00171 Aldehyde dehydrogenase family IX88_11185 PF13533 Biotin-lipoyl like IX88_11210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_11210 PF03466 LysR substrate binding domain IX88_11220 PF08450 SMP-30/Gluconolactonase/LRE-like region IX88_11235 PF04909 Amidohydrolase IX88_11240 PF07690 Major Facilitator Superfamily IX88_11260 PF13332 Hemagglutinin repeat IX88_11260 PF13018 Extended Signal Peptide of Type V secretion system IX88_11260 PF05860 haemagglutination activity domain IX88_11260 PF04829 Pre-toxin domain with VENN motif IX88_11265 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX88_11265 PF17287 POTRA domain IX88_11265 PF08479 POTRA domain, ShlB-type IX88_11275 PF01546 Peptidase family M20/M25/M40 IX88_11275 PF07687 Peptidase dimerisation domain IX88_11285 PF02254 TrkA-N domain IX88_11285 PF00999 Sodium/hydrogen exchanger family IX88_11290 PF07995 Glucose / Sorbosone dehydrogenase IX88_11295 PF03466 LysR substrate binding domain IX88_11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_11300 PF00857 Isochorismatase family IX88_11310 PF08359 YsiA-like protein, C-terminal region IX88_11310 PF00440 Bacterial regulatory proteins, tetR family IX88_11315 PF12706 Beta-lactamase superfamily domain IX88_11325 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_11335 PF00376 MerR family regulatory protein IX88_11335 PF09278 MerR, DNA binding IX88_11345 PF00106 short chain dehydrogenase IX88_11350 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_11350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_11355 PF00561 alpha/beta hydrolase fold IX88_11365 PF00171 Aldehyde dehydrogenase family IX88_11375 PF07690 Major Facilitator Superfamily IX88_11380 PF00920 Dehydratase family IX88_11385 PF00392 Bacterial regulatory proteins, gntR family IX88_11385 PF07729 FCD domain IX88_11395 PF03466 LysR substrate binding domain IX88_11395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_11400 PF13378 Enolase C-terminal domain-like IX88_11400 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IX88_11405 PF02426 Muconolactone delta-isomerase IX88_11410 PF04444 Catechol dioxygenase N terminus IX88_11410 PF00775 Dioxygenase IX88_11415 PF01144 Coenzyme A transferase IX88_11420 PF01144 Coenzyme A transferase IX88_11425 PF00108 Thiolase, N-terminal domain IX88_11425 PF02803 Thiolase, C-terminal domain IX88_11430 PF12146 Serine aminopeptidase, S33 IX88_11435 PF01804 Penicillin amidase IX88_11440 PF00171 Aldehyde dehydrogenase family IX88_11450 PF01179 Copper amine oxidase, enzyme domain IX88_11450 PF07833 Copper amine oxidase N-terminal domain IX88_11450 PF02728 Copper amine oxidase, N3 domain IX88_11450 PF02727 Copper amine oxidase, N2 domain IX88_11455 PF12833 Helix-turn-helix domain IX88_11455 PF02311 AraC-like ligand binding domain IX88_11460 PF01613 Flavin reductase like domain IX88_11465 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_11465 PF00175 Oxidoreductase NAD-binding domain IX88_11480 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_11480 PF00355 Rieske [2Fe-2S] domain IX88_11495 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_11500 PF01425 Amidase IX88_11515 PF07690 Major Facilitator Superfamily IX88_11525 PF00106 short chain dehydrogenase IX88_11540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_11540 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_11540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_11545 PF03466 LysR substrate binding domain IX88_11545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_11550 PF01614 Bacterial transcriptional regulator IX88_11550 PF09339 IclR helix-turn-helix domain IX88_11555 PF00753 Metallo-beta-lactamase superfamily IX88_11565 PF04143 Sulphur transport IX88_11575 PF01011 PQQ enzyme repeat IX88_11575 PF13360 PQQ-like domain IX88_11580 PF04966 Carbohydrate-selective porin, OprB family IX88_11585 PF05048 Periplasmic copper-binding protein (NosD) IX88_11590 PF01487 Type I 3-dehydroquinase IX88_11595 PF00775 Dioxygenase IX88_11600 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IX88_11600 PF00775 Dioxygenase IX88_11605 PF02627 Carboxymuconolactone decarboxylase family IX88_11610 PF07690 Major Facilitator Superfamily IX88_11615 PF00561 alpha/beta hydrolase fold IX88_11620 PF00206 Lyase IX88_11620 PF10397 Adenylosuccinate lyase C-terminus IX88_11625 PF02803 Thiolase, C-terminal domain IX88_11625 PF00108 Thiolase, N-terminal domain IX88_11630 PF01144 Coenzyme A transferase IX88_11635 PF01144 Coenzyme A transferase IX88_11640 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IX88_11645 PF04977 Septum formation initiator IX88_11650 PF04239 Protein of unknown function (DUF421) IX88_11655 PF03952 Enolase, N-terminal domain IX88_11655 PF00113 Enolase, C-terminal TIM barrel domain IX88_11660 PF00793 DAHP synthetase I family IX88_11665 PF06418 CTP synthase N-terminus IX88_11665 PF00117 Glutamine amidotransferase class-I IX88_11695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_11695 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_11710 PF00793 DAHP synthetase I family IX88_11715 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IX88_11720 PF10431 C-terminal, D2-small domain, of ClpB protein IX88_11720 PF00004 ATPase family associated with various cellular activities (AAA) IX88_11720 PF07724 AAA domain (Cdc48 subfamily) IX88_11720 PF17871 AAA lid domain IX88_11720 PF02861 Clp amino terminal domain, pathogenicity island component IX88_11725 PF02617 ATP-dependent Clp protease adaptor protein ClpS IX88_11735 PF02774 Semialdehyde dehydrogenase, dimerisation domain IX88_11735 PF01118 Semialdehyde dehydrogenase, NAD binding domain IX88_11750 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IX88_11755 PF00291 Pyridoxal-phosphate dependent enzyme IX88_11755 PF00585 C-terminal regulatory domain of Threonine dehydratase IX88_11760 PF02254 TrkA-N domain IX88_11760 PF02080 TrkA-C domain IX88_11765 PF02386 Cation transport protein IX88_11770 PF02253 Phospholipase A1 IX88_11775 PF05193 Peptidase M16 inactive domain IX88_11775 PF00675 Insulinase (Peptidase family M16) IX88_11775 PF08367 Peptidase M16C associated IX88_11780 PF00593 TonB dependent receptor IX88_11780 PF07715 TonB-dependent Receptor Plug Domain IX88_11785 PF00294 pfkB family carbohydrate kinase IX88_11795 PF07290 Protein of unknown function (DUF1449) IX88_11805 PF01654 Cytochrome bd terminal oxidase subunit I IX88_11810 PF02322 Cytochrome bd terminal oxidase subunit II IX88_11815 PF08173 Membrane bound YbgT-like protein IX88_11830 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IX88_11840 PF02881 SRP54-type protein, helical bundle domain IX88_11840 PF00448 SRP54-type protein, GTPase domain IX88_11865 PF00571 CBS domain IX88_11865 PF00478 IMP dehydrogenase / GMP reductase domain IX88_11870 PF00202 Aminotransferase class-III IX88_11875 PF00462 Glutaredoxin IX88_11885 PF03466 LysR substrate binding domain IX88_11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_11890 PF00557 Metallopeptidase family M24 IX88_11895 PF05525 Branched-chain amino acid transport protein IX88_11920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IX88_11920 PF00381 PTS HPr component phosphorylation site IX88_11920 PF02896 PEP-utilising enzyme, TIM barrel domain IX88_11920 PF00391 PEP-utilising enzyme, mobile domain IX88_11920 PF05524 PEP-utilising enzyme, N-terminal IX88_11925 PF00294 pfkB family carbohydrate kinase IX88_11930 PF02378 Phosphotransferase system, EIIC IX88_11930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IX88_11945 PF03707 Bacterial signalling protein N terminal repeat IX88_11945 PF00990 Diguanylate cyclase, GGDEF domain IX88_11945 PF00563 EAL domain IX88_11955 PF07995 Glucose / Sorbosone dehydrogenase IX88_11960 PF02586 SOS response associated peptidase (SRAP) IX88_11965 PF01740 STAS domain IX88_11965 PF00916 Sulfate permease family IX88_11970 PF00082 Subtilase family IX88_11970 PF05922 Peptidase inhibitor I9 IX88_11980 PF00324 Amino acid permease IX88_11985 PF00266 Aminotransferase class-V IX88_11990 PF01037 Lrp/AsnC ligand binding domain IX88_12015 PF13419 Haloacid dehalogenase-like hydrolase IX88_12020 PF01479 S4 domain IX88_12025 PF00154 recA bacterial DNA recombination protein IX88_12030 PF02631 RecX family IX88_12045 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_12045 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IX88_12050 PF07977 FabA-like domain IX88_12055 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_12055 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IX88_12065 PF01103 Surface antigen IX88_12065 PF07244 Surface antigen variable number repeat IX88_12070 PF02163 Peptidase family M50 IX88_12070 PF17820 PDZ domain IX88_12070 PF13180 PDZ domain IX88_12075 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IX88_12075 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IX88_12075 PF13288 DXP reductoisomerase C-terminal domain IX88_12085 PF01255 Putative undecaprenyl diphosphate synthase IX88_12090 PF01765 Ribosome recycling factor IX88_12095 PF00696 Amino acid kinase family IX88_12100 PF04055 Radical SAM superfamily IX88_12100 PF00919 Uncharacterized protein family UPF0004 IX88_12100 PF18693 TRAM domain IX88_12105 PF00512 His Kinase A (phospho-acceptor) domain IX88_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_12105 PF00989 PAS fold IX88_12110 PF00072 Response regulator receiver domain IX88_12110 PF00158 Sigma-54 interaction domain IX88_12110 PF02954 Bacterial regulatory protein, Fis family IX88_12120 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IX88_12120 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IX88_12130 PF02542 YgbB family IX88_12140 PF01266 FAD dependent oxidoreductase IX88_12160 PF00206 Lyase IX88_12160 PF10415 Fumarase C C-terminus IX88_12165 PF16363 GDP-mannose 4,6 dehydratase IX88_12170 PF02635 DsrE/DsrF-like family IX88_12190 PF00892 EamA-like transporter family IX88_12195 PF00392 Bacterial regulatory proteins, gntR family IX88_12195 PF00155 Aminotransferase class I and II IX88_12200 PF01638 HxlR-like helix-turn-helix IX88_12205 PF00994 Probable molybdopterin binding domain IX88_12205 PF03453 MoeA N-terminal region (domain I and II) IX88_12205 PF03454 MoeA C-terminal region (domain IV) IX88_12210 PF01967 MoaC family IX88_12210 PF00994 Probable molybdopterin binding domain IX88_12215 PF02391 MoaE protein IX88_12225 PF04055 Radical SAM superfamily IX88_12225 PF06463 Molybdenum Cofactor Synthesis C IX88_12230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX88_12230 PF01568 Molydopterin dinucleotide binding domain IX88_12230 PF00384 Molybdopterin oxidoreductase IX88_12235 PF12804 MobA-like NTP transferase domain IX88_12240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX88_12240 PF00384 Molybdopterin oxidoreductase IX88_12240 PF01568 Molydopterin dinucleotide binding domain IX88_12240 PF04324 BFD-like [2Fe-2S] binding domain IX88_12245 PF04324 BFD-like [2Fe-2S] binding domain IX88_12245 PF18267 Rubredoxin NAD+ reductase C-terminal domain IX88_12245 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_12245 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX88_12245 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX88_12250 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_12250 PF04324 BFD-like [2Fe-2S] binding domain IX88_12250 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX88_12250 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX88_12250 PF18267 Rubredoxin NAD+ reductase C-terminal domain IX88_12250 PF13806 Rieske-like [2Fe-2S] domain IX88_12260 PF00486 Transcriptional regulatory protein, C terminal IX88_12260 PF00072 Response regulator receiver domain IX88_12265 PF00005 ABC transporter IX88_12270 PF11799 impB/mucB/samB family C-terminal domain IX88_12270 PF13438 Domain of unknown function (DUF4113) IX88_12270 PF00817 impB/mucB/samB family IX88_12275 PF01220 Dehydroquinase class II IX88_12280 PF00364 Biotin-requiring enzyme IX88_12285 PF02785 Biotin carboxylase C-terminal domain IX88_12285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_12285 PF00289 Biotin carboxylase, N-terminal domain IX88_12295 PF12832 MFS_1 like family IX88_12320 PF00717 Peptidase S24-like IX88_12325 PF11799 impB/mucB/samB family C-terminal domain IX88_12325 PF11798 IMS family HHH motif IX88_12325 PF13438 Domain of unknown function (DUF4113) IX88_12325 PF00817 impB/mucB/samB family IX88_12425 PF00871 Acetokinase family IX88_12605 PF01695 IstB-like ATP binding protein IX88_12720 PF01645 Conserved region in glutamate synthase IX88_12735 PF01565 FAD binding domain IX88_12735 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IX88_12740 PF01451 Low molecular weight phosphotyrosine protein phosphatase IX88_12750 PF00465 Iron-containing alcohol dehydrogenase IX88_12755 PF03061 Thioesterase superfamily IX88_12760 PF05506 Domain of unknown function (DUF756) IX88_12760 PF04185 Phosphoesterase family IX88_12770 PF12170 DNA polymerase III tau subunit V interacting with alpha IX88_12770 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IX88_12770 PF12169 DNA polymerase III subunits gamma and tau domain III IX88_12785 PF07690 Major Facilitator Superfamily IX88_12810 PF00108 Thiolase, N-terminal domain IX88_12810 PF02803 Thiolase, C-terminal domain IX88_12820 PF03466 LysR substrate binding domain IX88_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_12830 PF01810 LysE type translocator IX88_12835 PF01037 Lrp/AsnC ligand binding domain IX88_12840 PF03594 Benzoate membrane transport protein IX88_12845 PF02308 MgtC family IX88_12850 PF00689 Cation transporting ATPase, C-terminus IX88_12850 PF00690 Cation transporter/ATPase, N-terminus IX88_12870 PF00582 Universal stress protein family IX88_12875 PF00005 ABC transporter IX88_12875 PF12848 ABC transporter IX88_12895 PF00593 TonB dependent receptor IX88_12895 PF07715 TonB-dependent Receptor Plug Domain IX88_12925 PF00924 Mechanosensitive ion channel IX88_12930 PF00593 TonB dependent receptor IX88_12930 PF07715 TonB-dependent Receptor Plug Domain IX88_12935 PF00440 Bacterial regulatory proteins, tetR family IX88_12945 PF13333 Integrase core domain IX88_12945 PF00665 Integrase core domain IX88_12945 PF13276 HTH-like domain IX88_12955 PF01037 Lrp/AsnC ligand binding domain IX88_12960 PF01817 Chorismate mutase type II IX88_13000 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IX88_13000 PF01433 Peptidase family M1 domain IX88_13000 PF11940 Domain of unknown function (DUF3458) Ig-like fold IX88_13015 PF02110 Hydroxyethylthiazole kinase family IX88_13020 PF06445 GyrI-like small molecule binding domain IX88_13030 PF05970 PIF1-like helicase IX88_13030 PF14493 Helix-turn-helix domain IX88_13035 PF00465 Iron-containing alcohol dehydrogenase IX88_13050 PF00171 Aldehyde dehydrogenase family IX88_13055 PF13520 Amino acid permease IX88_13060 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IX88_13065 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IX88_13070 PF00117 Glutamine amidotransferase class-I IX88_13070 PF00958 GMP synthase C terminal domain IX88_13070 PF02540 NAD synthase IX88_13075 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IX88_13075 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX88_13080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IX88_13085 PF00149 Calcineurin-like phosphoesterase IX88_13095 PF00881 Nitroreductase family IX88_13105 PF17209 Hfq protein IX88_13115 PF01119 DNA mismatch repair protein, C-terminal domain IX88_13115 PF08676 MutL C terminal dimerisation domain IX88_13120 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IX88_13125 PF00849 RNA pseudouridylate synthase IX88_13125 PF01479 S4 domain IX88_13140 PF00849 RNA pseudouridylate synthase IX88_13140 PF01479 S4 domain IX88_13150 PF04284 Protein of unknown function (DUF441) IX88_13155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_13155 PF03466 LysR substrate binding domain IX88_13170 PF07690 Major Facilitator Superfamily IX88_13175 PF00027 Cyclic nucleotide-binding domain IX88_13175 PF00520 Ion transport protein IX88_13185 PF00330 Aconitase family (aconitate hydratase) IX88_13185 PF11791 Aconitate B N-terminal domain IX88_13185 PF06434 Aconitate hydratase 2 N-terminus IX88_13200 PF07244 Surface antigen variable number repeat IX88_13200 PF01103 Surface antigen IX88_13200 PF17243 POTRA domain TamA domain 1 IX88_13205 PF07690 Major Facilitator Superfamily IX88_13210 PF03232 Ubiquinone biosynthesis protein COQ7 IX88_13220 PF00120 Glutamine synthetase, catalytic domain IX88_13225 PF00072 Response regulator receiver domain IX88_13225 PF00486 Transcriptional regulatory protein, C terminal IX88_13230 PF13493 Domain of unknown function (DUF4118) IX88_13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_13230 PF00512 His Kinase A (phospho-acceptor) domain IX88_13230 PF02702 Osmosensitive K+ channel His kinase sensor domain IX88_13235 PF02669 K+-transporting ATPase, c chain IX88_13245 PF03814 Potassium-transporting ATPase A subunit IX88_13260 PF03109 ABC1 family IX88_13265 PF00899 ThiF family IX88_13270 PF01613 Flavin reductase like domain IX88_13275 PF00501 AMP-binding enzyme IX88_13275 PF13193 AMP-binding enzyme C-terminal domain IX88_13280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_13280 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_13280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_13285 PF00106 short chain dehydrogenase IX88_13290 PF12833 Helix-turn-helix domain IX88_13295 PF09084 NMT1/THI5 like IX88_13300 PF00528 Binding-protein-dependent transport system inner membrane component IX88_13305 PF13847 Methyltransferase domain IX88_13305 PF17827 PrmC N-terminal domain IX88_13310 PF00472 RF-1 domain IX88_13310 PF03462 PCRF domain IX88_13320 PF03466 LysR substrate binding domain IX88_13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_13335 PF00296 Luciferase-like monooxygenase IX88_13345 PF13994 PgaD-like protein IX88_13350 PF00535 Glycosyl transferase family 2 IX88_13355 PF01522 Polysaccharide deacetylase IX88_13355 PF14883 Hypothetical glycosyl hydrolase family 13 IX88_13365 PF03618 Kinase/pyrophosphorylase IX88_13370 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IX88_13370 PF00391 PEP-utilising enzyme, mobile domain IX88_13370 PF02896 PEP-utilising enzyme, TIM barrel domain IX88_13380 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IX88_13380 PF06481 COX Aromatic Rich Motif IX88_13385 PF00115 Cytochrome C and Quinol oxidase polypeptide I IX88_13390 PF00510 Cytochrome c oxidase subunit III IX88_13395 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IX88_13400 PF01040 UbiA prenyltransferase family IX88_13405 PF01250 Ribosomal protein S6 IX88_13410 PF01084 Ribosomal protein S18 IX88_13415 PF03948 Ribosomal protein L9, C-terminal domain IX88_13415 PF01281 Ribosomal protein L9, N-terminal domain IX88_13420 PF03796 DnaB-like helicase C terminal domain IX88_13420 PF00772 DnaB-like helicase N terminal domain IX88_13425 PF00842 Alanine racemase, C-terminal domain IX88_13425 PF01168 Alanine racemase, N-terminal domain IX88_13435 PF01841 Transglutaminase-like superfamily IX88_13435 PF08379 Bacterial transglutaminase-like N-terminal region IX88_13445 PF14403 Circularly permuted ATP-grasp type 2 IX88_13460 PF01134 Glucose inhibited division protein A IX88_13460 PF13932 GidA associated domain IX88_13480 PF02954 Bacterial regulatory protein, Fis family IX88_13485 PF01808 AICARFT/IMPCHase bienzyme IX88_13485 PF02142 MGS-like domain IX88_13490 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IX88_13490 PF02844 Phosphoribosylglycinamide synthetase, N domain IX88_13490 PF02843 Phosphoribosylglycinamide synthetase, C domain IX88_13495 PF03180 NLPA lipoprotein IX88_13500 PF09383 NIL domain IX88_13500 PF00005 ABC transporter IX88_13505 PF00528 Binding-protein-dependent transport system inner membrane component IX88_13510 PF00753 Metallo-beta-lactamase superfamily IX88_13510 PF16123 Hydroxyacylglutathione hydrolase C-terminus IX88_13520 PF00375 Sodium:dicarboxylate symporter family IX88_13540 PF07995 Glucose / Sorbosone dehydrogenase IX88_13545 PF00892 EamA-like transporter family IX88_13550 PF01177 Asp/Glu/Hydantoin racemase IX88_13570 PF00486 Transcriptional regulatory protein, C terminal IX88_13570 PF00072 Response regulator receiver domain IX88_13575 PF08521 Two-component sensor kinase N-terminal IX88_13575 PF00512 His Kinase A (phospho-acceptor) domain IX88_13575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_13615 PF00512 His Kinase A (phospho-acceptor) domain IX88_13615 PF00672 HAMP domain IX88_13620 PF00486 Transcriptional regulatory protein, C terminal IX88_13620 PF00072 Response regulator receiver domain IX88_13630 PF00576 HIUase/Transthyretin family IX88_13640 PF02470 MlaD protein IX88_13645 PF04403 Paraquat-inducible protein A IX88_13675 PF00083 Sugar (and other) transporter IX88_13675 PF08946 Osmosensory transporter coiled coil IX88_13725 PF00392 Bacterial regulatory proteins, gntR family IX88_13725 PF07729 FCD domain IX88_13735 PF03616 Sodium/glutamate symporter IX88_13740 PF00561 alpha/beta hydrolase fold IX88_13765 PF04076 Bacterial OB fold (BOF) protein IX88_13795 PF00324 Amino acid permease IX88_13800 PF00171 Aldehyde dehydrogenase family IX88_13805 PF00202 Aminotransferase class-III IX88_13810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_13810 PF03466 LysR substrate binding domain IX88_13845 PF08479 POTRA domain, ShlB-type IX88_13845 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX88_13845 PF17287 POTRA domain IX88_13870 PF00069 Protein kinase domain IX88_13890 PF00814 Glycoprotease family IX88_13895 PF01165 Ribosomal protein S21 IX88_13900 PF09424 Yqey-like protein IX88_13905 PF01435 Peptidase family M48 IX88_13910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX88_13910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX88_13925 PF00156 Phosphoribosyl transferase domain IX88_13930 PF02674 Colicin V production protein IX88_13935 PF01180 Dihydroorotate dehydrogenase IX88_14180 PF03796 DnaB-like helicase C terminal domain IX88_14180 PF00772 DnaB-like helicase N terminal domain IX88_14285 PF00589 Phage integrase family IX88_14295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IX88_14295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IX88_14300 PF00881 Nitroreductase family IX88_14310 PF00271 Helicase conserved C-terminal domain IX88_14310 PF00270 DEAD/DEAH box helicase IX88_14315 PF00313 'Cold-shock' DNA-binding domain IX88_14325 PF04542 Sigma-70 region 2 IX88_14325 PF00140 Sigma-70 factor, region 1.2 IX88_14325 PF04545 Sigma-70, region 4 IX88_14330 PF04241 Protein of unknown function (DUF423) IX88_14340 PF05690 Thiazole biosynthesis protein ThiG IX88_14350 PF03883 Peroxide stress protein YaaA IX88_14360 PF00753 Metallo-beta-lactamase superfamily IX88_14365 PF07687 Peptidase dimerisation domain IX88_14365 PF01546 Peptidase family M20/M25/M40 IX88_14375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IX88_14380 PF01817 Chorismate mutase type II IX88_14380 PF00800 Prephenate dehydratase IX88_14380 PF01842 ACT domain IX88_14385 PF00756 Putative esterase IX88_14390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_14390 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_14390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_14395 PF00375 Sodium:dicarboxylate symporter family IX88_14400 PF00591 Glycosyl transferase family, a/b domain IX88_14400 PF02885 Glycosyl transferase family, helical bundle domain IX88_14405 PF07023 Protein of unknown function (DUF1315) IX88_14410 PF01513 ATP-NAD kinase IX88_14415 PF14814 Bifunctional transglycosylase second domain IX88_14415 PF00912 Transglycosylase IX88_14415 PF00905 Penicillin binding protein transpeptidase domain IX88_14425 PF00293 NUDIX domain IX88_14435 PF08521 Two-component sensor kinase N-terminal IX88_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_14435 PF00512 His Kinase A (phospho-acceptor) domain IX88_14440 PF00072 Response regulator receiver domain IX88_14440 PF00486 Transcriptional regulatory protein, C terminal IX88_14445 PF04076 Bacterial OB fold (BOF) protein IX88_14450 PF00437 Type II/IV secretion system protein IX88_14460 PF01980 tRNA-methyltransferase O IX88_14460 PF18389 TrmO C-terminal domain IX88_14465 PF00175 Oxidoreductase NAD-binding domain IX88_14465 PF00970 Oxidoreductase FAD-binding domain IX88_14470 PF02567 Phenazine biosynthesis-like protein IX88_14475 PF00392 Bacterial regulatory proteins, gntR family IX88_14475 PF00155 Aminotransferase class I and II IX88_14485 PF00037 4Fe-4S binding domain IX88_14490 PF00893 Small Multidrug Resistance protein IX88_14495 PF03466 LysR substrate binding domain IX88_14495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_14505 PF13533 Biotin-lipoyl like IX88_14510 PF00873 AcrB/AcrD/AcrF family IX88_14515 PF02321 Outer membrane efflux protein IX88_14520 PF00464 Serine hydroxymethyltransferase IX88_14545 PF00005 ABC transporter IX88_14550 PF01061 ABC-2 type transporter IX88_14555 PF14489 QueF-like protein IX88_14555 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IX88_14565 PF01098 Cell cycle protein IX88_14570 PF13406 Transglycosylase SLT domain IX88_14575 PF03330 Lytic transglycolase IX88_14575 PF05036 Sporulation related domain IX88_14595 PF12833 Helix-turn-helix domain IX88_14605 PF00889 Elongation factor TS IX88_14610 PF00318 Ribosomal protein S2 IX88_14615 PF00557 Metallopeptidase family M24 IX88_14625 PF07690 Major Facilitator Superfamily IX88_14640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_14640 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_14645 PF04055 Radical SAM superfamily IX88_14650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_14650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_14650 PF09317 Domain of unknown function (DUF1974) IX88_14665 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IX88_14665 PF05221 S-adenosyl-L-homocysteine hydrolase IX88_14670 PF02219 Methylenetetrahydrofolate reductase IX88_14675 PF04452 RNA methyltransferase IX88_14680 PF03707 Bacterial signalling protein N terminal repeat IX88_14680 PF00990 Diguanylate cyclase, GGDEF domain IX88_14680 PF00563 EAL domain IX88_14685 PF01515 Phosphate acetyl/butaryl transferase IX88_14685 PF00390 Malic enzyme, N-terminal domain IX88_14685 PF03949 Malic enzyme, NAD binding domain IX88_14690 PF12627 Probable RNA and SrmB- binding site of polymerase A IX88_14690 PF01743 Poly A polymerase head domain IX88_14695 PF13180 PDZ domain IX88_14700 PF01784 NIF3 (NGG1p interacting factor 3) IX88_14705 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IX88_14705 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IX88_14740 PF01040 UbiA prenyltransferase family IX88_14745 PF04345 Chorismate lyase IX88_14755 PF00854 POT family IX88_14765 PF00589 Phage integrase family IX88_14765 PF13356 Arm DNA-binding domain IX88_14805 PF00149 Calcineurin-like phosphoesterase IX88_14830 PF05154 TM2 domain IX88_14885 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) IX88_14900 PF06381 Protein of unknown function (DUF1073) IX88_14920 PF13333 Integrase core domain IX88_14920 PF00665 Integrase core domain IX88_14920 PF13276 HTH-like domain IX88_14925 PF01527 Transposase IX88_14975 PF01695 IstB-like ATP binding protein IX88_15080 PF00117 Glutamine amidotransferase class-I IX88_15085 PF01433 Peptidase family M1 domain IX88_15085 PF11838 ERAP1-like C-terminal domain IX88_15090 PF00593 TonB dependent receptor IX88_15090 PF07715 TonB-dependent Receptor Plug Domain IX88_15095 PF02885 Glycosyl transferase family, helical bundle domain IX88_15095 PF00591 Glycosyl transferase family, a/b domain IX88_15100 PF00218 Indole-3-glycerol phosphate synthase IX88_15115 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IX88_15115 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IX88_15120 PF01799 [2Fe-2S] binding domain IX88_15120 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_15130 PF00144 Beta-lactamase IX88_15145 PF05675 Protein of unknown function (DUF817) IX88_15150 PF01208 Uroporphyrinogen decarboxylase (URO-D) IX88_15160 PF00425 chorismate binding enzyme IX88_15170 PF00975 Thioesterase domain IX88_15175 PF00005 ABC transporter IX88_15175 PF00664 ABC transporter transmembrane region IX88_15180 PF00664 ABC transporter transmembrane region IX88_15180 PF00005 ABC transporter IX88_15190 PF00282 Pyridoxal-dependent decarboxylase conserved domain IX88_15195 PF00857 Isochorismatase family IX88_15195 PF00550 Phosphopantetheine attachment site IX88_15200 PF00501 AMP-binding enzyme IX88_15200 PF13193 AMP-binding enzyme C-terminal domain IX88_15205 PF00501 AMP-binding enzyme IX88_15205 PF00668 Condensation domain IX88_15205 PF00550 Phosphopantetheine attachment site IX88_15210 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IX88_15215 PF07715 TonB-dependent Receptor Plug Domain IX88_15215 PF00593 TonB dependent receptor IX88_15220 PF01497 Periplasmic binding protein IX88_15225 PF00005 ABC transporter IX88_15230 PF01032 FecCD transport family IX88_15235 PF01032 FecCD transport family IX88_15240 PF00668 Condensation domain IX88_15240 PF00501 AMP-binding enzyme IX88_15240 PF13193 AMP-binding enzyme C-terminal domain IX88_15240 PF00550 Phosphopantetheine attachment site IX88_15240 PF00975 Thioesterase domain IX88_15245 PF00550 Phosphopantetheine attachment site IX88_15245 PF13193 AMP-binding enzyme C-terminal domain IX88_15245 PF00501 AMP-binding enzyme IX88_15245 PF00668 Condensation domain IX88_15255 PF13309 HTH domain IX88_15255 PF08348 YheO-like PAS domain IX88_15260 PF00291 Pyridoxal-phosphate dependent enzyme IX88_15265 PF02678 Pirin IX88_15265 PF17954 Quercetinase C-terminal cupin domain IX88_15295 PF04328 Selenoprotein, putative IX88_15300 PF02554 Carbon starvation protein CstA IX88_15300 PF13722 5TM C-terminal transporter carbon starvation CstA IX88_15305 PF09285 Elongation factor P, C-terminal IX88_15305 PF08207 Elongation factor P (EF-P) KOW-like domain IX88_15305 PF01132 Elongation factor P (EF-P) OB domain IX88_15310 PF04055 Radical SAM superfamily IX88_15320 PF00563 EAL domain IX88_15320 PF12792 CSS motif domain associated with EAL IX88_15325 PF01197 Ribosomal protein L31 IX88_15330 PF13593 SBF-like CPA transporter family (DUF4137) IX88_15335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_15340 PF07690 Major Facilitator Superfamily IX88_15345 PF05362 Lon protease (S16) C-terminal proteolytic domain IX88_15345 PF13654 AAA domain IX88_15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_15350 PF03466 LysR substrate binding domain IX88_15355 PF01551 Peptidase family M23 IX88_15355 PF01476 LysM domain IX88_15360 PF01975 Survival protein SurE IX88_15375 PF00768 D-alanyl-D-alanine carboxypeptidase IX88_15375 PF07943 Penicillin-binding protein 5, C-terminal domain IX88_15380 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_15385 PF13344 Haloacid dehalogenase-like hydrolase IX88_15385 PF00293 NUDIX domain IX88_15395 PF04356 Protein of unknown function (DUF489) IX88_15400 PF00206 Lyase IX88_15400 PF08328 Adenylosuccinate lyase C-terminal IX88_15415 PF01343 Peptidase family S49 IX88_15415 PF08496 Peptidase family S49 N-terminal IX88_15420 PF00005 ABC transporter IX88_15425 PF00528 Binding-protein-dependent transport system inner membrane component IX88_15430 PF00528 Binding-protein-dependent transport system inner membrane component IX88_15435 PF12849 PBP superfamily domain IX88_15440 PF00324 Amino acid permease IX88_15445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX88_15445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX88_15445 PF00205 Thiamine pyrophosphate enzyme, central domain IX88_15450 PF01037 Lrp/AsnC ligand binding domain IX88_15455 PF00171 Aldehyde dehydrogenase family IX88_15460 PF00282 Pyridoxal-dependent decarboxylase conserved domain IX88_15465 PF00202 Aminotransferase class-III IX88_15485 PF00487 Fatty acid desaturase IX88_15490 PF00175 Oxidoreductase NAD-binding domain IX88_15490 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_15490 PF00970 Oxidoreductase FAD-binding domain IX88_15495 PF00440 Bacterial regulatory proteins, tetR family IX88_15505 PF18339 RapA N-terminal Tudor like domain 1 IX88_15505 PF18337 RapA N-terminal Tudor like domain IX88_15505 PF00176 SNF2 family N-terminal domain IX88_15505 PF12137 RNA polymerase recycling family C-terminal IX88_15505 PF00271 Helicase conserved C-terminal domain IX88_15510 PF00849 RNA pseudouridylate synthase IX88_15520 PF00202 Aminotransferase class-III IX88_15525 PF02581 Thiamine monophosphate synthase IX88_15550 PF05193 Peptidase M16 inactive domain IX88_15550 PF00675 Insulinase (Peptidase family M16) IX88_15555 PF02567 Phenazine biosynthesis-like protein IX88_15565 PF03466 LysR substrate binding domain IX88_15565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_15570 PF06779 Uncharacterised MFS-type transporter YbfB IX88_15590 PF00180 Isocitrate/isopropylmalate dehydrogenase IX88_15595 PF00849 RNA pseudouridylate synthase IX88_15600 PF03971 Monomeric isocitrate dehydrogenase IX88_15610 PF07943 Penicillin-binding protein 5, C-terminal domain IX88_15610 PF00768 D-alanyl-D-alanine carboxypeptidase IX88_15615 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_15620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_15625 PF00875 DNA photolyase IX88_15625 PF03441 FAD binding domain of DNA photolyase IX88_15655 PF02350 UDP-N-acetylglucosamine 2-epimerase IX88_15670 PF03060 Nitronate monooxygenase IX88_15675 PF01207 Dihydrouridine synthase (Dus) IX88_15680 PF07759 Protein of unknown function (DUF1615) IX88_15690 PF01472 PUA domain IX88_15690 PF00696 Amino acid kinase family IX88_15695 PF01926 50S ribosome-binding GTPase IX88_15695 PF01018 GTP1/OBG IX88_15710 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IX88_15710 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_15715 PF00892 EamA-like transporter family IX88_15725 PF12344 Ultra-violet resistance protein B IX88_15725 PF02151 UvrB/uvrC motif IX88_15725 PF04851 Type III restriction enzyme, res subunit IX88_15725 PF17757 UvrB interaction domain IX88_15725 PF00271 Helicase conserved C-terminal domain IX88_15735 PF17151 Periplasmic sensor domain IX88_15735 PF00990 Diguanylate cyclase, GGDEF domain IX88_15770 PF00106 short chain dehydrogenase IX88_15775 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IX88_15780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IX88_15785 PF02565 Recombination protein O C terminal IX88_15785 PF11967 Recombination protein O N terminal IX88_15795 PF01926 50S ribosome-binding GTPase IX88_15795 PF07650 KH domain IX88_15800 PF00035 Double-stranded RNA binding motif IX88_15800 PF14622 Ribonuclease-III-like IX88_15810 PF10502 Signal peptidase, peptidase S26 IX88_15815 PF03144 Elongation factor Tu domain 2 IX88_15815 PF00009 Elongation factor Tu GTP binding domain IX88_15815 PF06421 GTP-binding protein LepA C-terminus IX88_15815 PF00679 Elongation factor G C-terminus IX88_15825 PF13180 PDZ domain IX88_15830 PF00890 FAD binding domain IX88_15830 PF02910 Fumarate reductase flavoprotein C-term IX88_15840 PF02223 Thymidylate kinase IX88_15845 PF02618 YceG-like family IX88_15850 PF01063 Amino-transferase class IV IX88_15865 PF00528 Binding-protein-dependent transport system inner membrane component IX88_15870 PF00528 Binding-protein-dependent transport system inner membrane component IX88_15875 PF00005 ABC transporter IX88_15875 PF12857 TOBE-like domain IX88_15880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_15880 PF03466 LysR substrate binding domain IX88_15890 PF14602 Hexapeptide repeat of succinyl-transferase IX88_15890 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IX88_15890 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_15900 PF06508 Queuosine biosynthesis protein QueC IX88_15915 PF00578 AhpC/TSA family IX88_15925 PF01467 Cytidylyltransferase-like IX88_15925 PF00293 NUDIX domain IX88_15930 PF00378 Enoyl-CoA hydratase/isomerase IX88_15935 PF01784 NIF3 (NGG1p interacting factor 3) IX88_15945 PF07690 Major Facilitator Superfamily IX88_15950 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IX88_15950 PF02769 AIR synthase related protein, C-terminal domain IX88_15950 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IX88_15955 PF01966 HD domain IX88_15960 PF01330 RuvA N terminal domain IX88_15960 PF07499 RuvA, C-terminal domain IX88_15965 PF17864 RuvB AAA lid domain IX88_15965 PF05491 RuvB C-terminal winged helix domain IX88_15965 PF05496 Holliday junction DNA helicase RuvB P-loop domain IX88_15970 PF07687 Peptidase dimerisation domain IX88_15970 PF01546 Peptidase family M20/M25/M40 IX88_15975 PF03061 Thioesterase superfamily IX88_15980 PF01618 MotA/TolQ/ExbB proton channel family IX88_15985 PF02472 Biopolymer transport protein ExbD/TolR IX88_15995 PF07676 WD40-like Beta Propeller Repeat IX88_15995 PF04052 TolB amino-terminal domain IX88_16000 PF00691 OmpA family IX88_16010 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IX88_16015 PF00588 SpoU rRNA Methylase family IX88_16015 PF08032 RNA 2'-O ribose methyltransferase substrate binding IX88_16045 PF08299 Bacterial dnaA protein helix-turn-helix IX88_16045 PF00308 Bacterial dnaA protein IX88_16045 PF11638 DnaA N-terminal domain IX88_16050 PF01594 AI-2E family transporter IX88_16055 PF02769 AIR synthase related protein, C-terminal domain IX88_16055 PF00586 AIR synthase related protein, N-terminal domain IX88_16060 PF00551 Formyl transferase IX88_16065 PF12697 Alpha/beta hydrolase family IX88_16070 PF01343 Peptidase family S49 IX88_16070 PF06965 Na+/H+ antiporter 1 IX88_16080 PF00753 Metallo-beta-lactamase superfamily IX88_16080 PF13567 Domain of unknown function (DUF4131) IX88_16080 PF03772 Competence protein IX88_16085 PF00005 ABC transporter IX88_16090 PF02687 FtsX-like permease family IX88_16090 PF12704 MacB-like periplasmic core domain IX88_16100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IX88_16110 PF00266 Aminotransferase class-V IX88_16120 PF13533 Biotin-lipoyl like IX88_16140 PF00535 Glycosyl transferase family 2 IX88_16155 PF03989 DNA gyrase C-terminal domain, beta-propeller IX88_16155 PF00521 DNA gyrase/topoisomerase IV, subunit A IX88_16160 PF01012 Electron transfer flavoprotein domain IX88_16160 PF00766 Electron transfer flavoprotein FAD-binding domain IX88_16165 PF01012 Electron transfer flavoprotein domain IX88_16170 PF00589 Phage integrase family IX88_16170 PF02899 Phage integrase, N-terminal SAM-like domain IX88_16175 PF01810 LysE type translocator IX88_16180 PF01678 Diaminopimelate epimerase IX88_16185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IX88_16185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IX88_16195 PF00324 Amino acid permease IX88_16200 PF18073 Rubredoxin metal binding domain IX88_16210 PF00152 tRNA synthetases class II (D, K and N) IX88_16215 PF11890 Domain of unknown function (DUF3410) IX88_16215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX88_16215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX88_16220 PF06803 Protein of unknown function (DUF1232) IX88_16225 PF02634 FdhD/NarQ family IX88_16230 PF00384 Molybdopterin oxidoreductase IX88_16235 PF02595 Glycerate kinase family IX88_16245 PF00106 short chain dehydrogenase IX88_16250 PF00881 Nitroreductase family IX88_16275 PF13276 HTH-like domain IX88_16275 PF00665 Integrase core domain IX88_16275 PF13333 Integrase core domain IX88_16290 PF13411 MerR HTH family regulatory protein IX88_16305 PF00668 Condensation domain IX88_16305 PF00975 Thioesterase domain IX88_16305 PF00550 Phosphopantetheine attachment site IX88_16305 PF13193 AMP-binding enzyme C-terminal domain IX88_16305 PF00501 AMP-binding enzyme IX88_16320 PF00440 Bacterial regulatory proteins, tetR family IX88_16410 PF00589 Phage integrase family IX88_16410 PF13356 Arm DNA-binding domain IX88_16420 PF01272 Transcription elongation factor, GreA/GreB, C-term IX88_16420 PF03449 Transcription elongation factor, N-terminal IX88_16430 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX88_16430 PF01464 Transglycosylase SLT domain IX88_16440 PF01171 PP-loop family IX88_16445 PF01464 Transglycosylase SLT domain IX88_16450 PF01435 Peptidase family M48 IX88_16460 PF00873 AcrB/AcrD/AcrF family IX88_16465 PF03009 Glycerophosphoryl diester phosphodiesterase family IX88_16470 PF00753 Metallo-beta-lactamase superfamily IX88_16475 PF01219 Prokaryotic diacylglycerol kinase IX88_16480 PF00118 TCP-1/cpn60 chaperonin family IX88_16485 PF00166 Chaperonin 10 Kd subunit IX88_16490 PF00149 Calcineurin-like phosphoesterase IX88_16495 PF00781 Diacylglycerol kinase catalytic domain IX88_16500 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain IX88_16500 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain IX88_16505 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IX88_16505 PF01266 FAD dependent oxidoreductase IX88_16510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IX88_16510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IX88_16515 PF00083 Sugar (and other) transporter IX88_16530 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IX88_16530 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IX88_16550 PF09423 PhoD-like phosphatase IX88_16550 PF16655 PhoD-like phosphatase, N-terminal domain IX88_16570 PF00809 Pterin binding enzyme IX88_16575 PF00004 ATPase family associated with various cellular activities (AAA) IX88_16575 PF17862 AAA+ lid domain IX88_16575 PF06480 FtsH Extracellular IX88_16575 PF01434 Peptidase family M41 IX88_16580 PF01728 FtsJ-like methyltransferase IX88_16585 PF01985 CRS1 / YhbY (CRM) domain IX88_16600 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IX88_16600 PF00117 Glutamine amidotransferase class-I IX88_16605 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IX88_16605 PF02142 MGS-like domain IX88_16605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_16610 PF01272 Transcription elongation factor, GreA/GreB, C-term IX88_16610 PF03449 Transcription elongation factor, N-terminal IX88_16615 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_16620 PF00582 Universal stress protein family IX88_16625 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX88_16635 PF09587 Bacterial capsule synthesis protein PGA_cap IX88_16655 PF00999 Sodium/hydrogen exchanger family IX88_16660 PF04228 Putative neutral zinc metallopeptidase IX88_16665 PF05661 Protein of unknown function (DUF808) IX88_16670 PF00579 tRNA synthetases class I (W and Y) IX88_16675 PF02629 CoA binding domain IX88_16675 PF00549 CoA-ligase IX88_16680 PF08442 ATP-grasp domain IX88_16680 PF00549 CoA-ligase IX88_16685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_16685 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_16690 PF00364 Biotin-requiring enzyme IX88_16690 PF02817 e3 binding domain IX88_16690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX88_16695 PF02779 Transketolase, pyrimidine binding domain IX88_16695 PF00676 Dehydrogenase E1 component IX88_16695 PF16870 2-oxoglutarate dehydrogenase C-terminal IX88_16695 PF16078 2-oxoglutarate dehydrogenase N-terminus IX88_16700 PF13085 2Fe-2S iron-sulfur cluster binding domain IX88_16705 PF02910 Fumarate reductase flavoprotein C-term IX88_16705 PF00890 FAD binding domain IX88_16710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IX88_16715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IX88_16725 PF00285 Citrate synthase, C-terminal domain IX88_16750 PF04539 Sigma-70 region 3 IX88_16750 PF04546 Sigma-70, non-essential region IX88_16750 PF03979 Sigma-70 factor, region 1.1 IX88_16750 PF00140 Sigma-70 factor, region 1.2 IX88_16750 PF04545 Sigma-70, region 4 IX88_16750 PF04542 Sigma-70 region 2 IX88_16755 PF04359 Protein of unknown function (DUF493) IX88_16760 PF03099 Biotin/lipoate A/B protein ligase family IX88_16770 PF00465 Iron-containing alcohol dehydrogenase IX88_16775 PF13520 Amino acid permease IX88_16780 PF03358 NADPH-dependent FMN reductase IX88_16785 PF01638 HxlR-like helix-turn-helix IX88_16790 PF00588 SpoU rRNA Methylase family IX88_16795 PF10414 Sirohaem synthase dimerisation region IX88_16795 PF14824 Sirohaem biosynthesis protein central IX88_16795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IX88_16800 PF02403 Seryl-tRNA synthetase N-terminal domain IX88_16800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX88_16810 PF03548 Outer membrane lipoprotein carrier protein LolA IX88_16815 PF01016 Ribosomal L27 protein IX88_16820 PF00829 Ribosomal prokaryotic L21 protein IX88_16830 PF00348 Polyprenyl synthetase IX88_16840 PF01569 PAP2 superfamily IX88_16845 PF00529 HlyD membrane-fusion protein of T1SS IX88_16845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_16850 PF00873 AcrB/AcrD/AcrF family IX88_16855 PF02321 Outer membrane efflux protein IX88_16860 PF01906 Putative heavy-metal-binding IX88_16865 PF01906 Putative heavy-metal-binding IX88_16885 PF10458 Valyl tRNA synthetase tRNA binding arm IX88_16885 PF00133 tRNA synthetases class I (I, L, M and V) IX88_16885 PF08264 Anticodon-binding domain of tRNA IX88_16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_16905 PF03466 LysR substrate binding domain IX88_16910 PF00909 Ammonium Transporter Family IX88_16920 PF08521 Two-component sensor kinase N-terminal IX88_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_16920 PF00512 His Kinase A (phospho-acceptor) domain IX88_16925 PF00072 Response regulator receiver domain IX88_16925 PF00486 Transcriptional regulatory protein, C terminal IX88_16930 PF08019 Phosphoethanolamine transferase EptA/EptB IX88_16930 PF00884 Sulfatase IX88_16955 PF01734 Patatin-like phospholipase IX88_16965 PF01145 SPFH domain / Band 7 family IX88_16970 PF04237 YjbR IX88_16975 PF00348 Polyprenyl synthetase IX88_16980 PF04303 PrpF protein IX88_16985 PF00324 Amino acid permease IX88_16995 PF01965 DJ-1/PfpI family IX88_17000 PF08240 Alcohol dehydrogenase GroES-like domain IX88_17000 PF14765 Polyketide synthase dehydratase IX88_17000 PF00550 Phosphopantetheine attachment site IX88_17000 PF08659 KR domain IX88_17000 PF00698 Acyl transferase domain IX88_17000 PF02801 Beta-ketoacyl synthase, C-terminal domain IX88_17000 PF00109 Beta-ketoacyl synthase, N-terminal domain IX88_17000 PF16197 Ketoacyl-synthetase C-terminal extension IX88_17000 PF08990 Erythronolide synthase docking IX88_17000 PF09277 Erythronolide synthase, docking IX88_17005 PF12833 Helix-turn-helix domain IX88_17005 PF06719 AraC-type transcriptional regulator N-terminus IX88_17010 PF02673 Bacitracin resistance protein BacA IX88_17030 PF02525 Flavodoxin-like fold IX88_17045 PF01507 Phosphoadenosine phosphosulfate reductase family IX88_17050 PF06974 Protein of unknown function (DUF1298) IX88_17050 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain IX88_17060 PF10150 Ribonuclease E/G family IX88_17060 PF00575 S1 RNA binding domain IX88_17065 PF02545 Maf-like protein IX88_17070 PF04093 rod shape-determining protein MreD IX88_17075 PF04085 rod shape-determining protein MreC IX88_17085 PF02686 Glu-tRNAGln amidotransferase C subunit IX88_17090 PF01425 Amidase IX88_17095 PF02637 GatB domain IX88_17095 PF02934 GatB/GatE catalytic domain IX88_17120 PF05992 SbmA/BacA-like family IX88_17125 PF13291 ACT domain IX88_17125 PF00291 Pyridoxal-phosphate dependent enzyme IX88_17130 PF01734 Patatin-like phospholipase IX88_17135 PF01235 Sodium:alanine symporter family IX88_17150 PF00881 Nitroreductase family IX88_17155 PF07690 Major Facilitator Superfamily IX88_17160 PF12805 FUSC-like inner membrane protein yccS IX88_17170 PF00175 Oxidoreductase NAD-binding domain IX88_17170 PF00258 Flavodoxin IX88_17170 PF00667 FAD binding domain IX88_17210 PF17969 L,D-transpeptidase C-terminal domain IX88_17210 PF03734 L,D-transpeptidase catalytic domain IX88_17215 PF04304 Protein of unknown function (DUF454) IX88_17225 PF08085 Entericidin EcnA/B family IX88_17230 PF07687 Peptidase dimerisation domain IX88_17230 PF01546 Peptidase family M20/M25/M40 IX88_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_17240 PF01584 CheW-like domain IX88_17240 PF00072 Response regulator receiver domain IX88_17240 PF01627 Hpt domain IX88_17245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IX88_17245 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IX88_17250 PF01584 CheW-like domain IX88_17255 PF00072 Response regulator receiver domain IX88_17260 PF00072 Response regulator receiver domain IX88_17275 PF00873 AcrB/AcrD/AcrF family IX88_17280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX88_17280 PF03129 Anticodon binding domain IX88_17280 PF04073 Aminoacyl-tRNA editing domain IX88_17285 PF07411 Domain of unknown function (DUF1508) IX88_17290 PF03831 PhnA domain IX88_17290 PF08274 PhnA Zinc-Ribbon IX88_17295 PF04343 Protein of unknown function, DUF488 IX88_17305 PF01571 Aminomethyltransferase folate-binding domain IX88_17310 PF10411 Disulfide bond isomerase protein N-terminus IX88_17310 PF13098 Thioredoxin-like domain IX88_17320 PF03547 Membrane transport protein IX88_17325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_17330 PF00593 TonB dependent receptor IX88_17330 PF07715 TonB-dependent Receptor Plug Domain IX88_17335 PF02245 Methylpurine-DNA glycosylase (MPG) IX88_17340 PF06827 Zinc finger found in FPG and IleRS IX88_17340 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IX88_17340 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IX88_17355 PF01741 Large-conductance mechanosensitive channel, MscL IX88_17365 PF00860 Permease family IX88_17370 PF08468 Methyltransferase small domain N-terminal IX88_17370 PF05175 Methyltransferase small domain IX88_17375 PF00324 Amino acid permease IX88_17380 PF01139 tRNA-splicing ligase RtcB IX88_17390 PF00691 OmpA family IX88_17390 PF13505 Outer membrane protein beta-barrel domain IX88_17400 PF00108 Thiolase, N-terminal domain IX88_17400 PF02803 Thiolase, C-terminal domain IX88_17410 PF00893 Small Multidrug Resistance protein IX88_17420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX88_17420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX88_17425 PF01011 PQQ enzyme repeat IX88_17430 PF04966 Carbohydrate-selective porin, OprB family IX88_17435 PF02515 CoA-transferase family III IX88_17440 PF12833 Helix-turn-helix domain IX88_17440 PF02311 AraC-like ligand binding domain IX88_17445 PF00108 Thiolase, N-terminal domain IX88_17445 PF02803 Thiolase, C-terminal domain IX88_17450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_17450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_17450 PF00378 Enoyl-CoA hydratase/isomerase IX88_17465 PF13673 Acetyltransferase (GNAT) domain IX88_17475 PF03006 Haemolysin-III related IX88_17480 PF00083 Sugar (and other) transporter IX88_17480 PF07690 Major Facilitator Superfamily IX88_17490 PF02810 SEC-C motif IX88_17490 PF07517 SecA DEAD-like domain IX88_17490 PF01043 SecA preprotein cross-linking domain IX88_17490 PF07516 SecA Wing and Scaffold domain IX88_17495 PF00578 AhpC/TSA family IX88_17495 PF10417 C-terminal domain of 1-Cys peroxiredoxin IX88_17500 PF00753 Metallo-beta-lactamase superfamily IX88_17515 PF08245 Mur ligase middle domain IX88_17515 PF02875 Mur ligase family, glutamate ligase domain IX88_17520 PF01039 Carboxyl transferase domain IX88_17525 PF00290 Tryptophan synthase alpha chain IX88_17550 PF00291 Pyridoxal-phosphate dependent enzyme IX88_17555 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IX88_17560 PF00593 TonB dependent receptor IX88_17560 PF07715 TonB-dependent Receptor Plug Domain IX88_17565 PF01923 Cobalamin adenosyltransferase IX88_17570 PF03009 Glycerophosphoryl diester phosphodiesterase family IX88_17585 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IX88_17590 PF00072 Response regulator receiver domain IX88_17590 PF00486 Transcriptional regulatory protein, C terminal IX88_17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_17595 PF00512 His Kinase A (phospho-acceptor) domain IX88_17595 PF00672 HAMP domain IX88_17605 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_17605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_17605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_17605 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_17610 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_17610 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_17610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_17610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_17615 PF06146 Phosphate-starvation-inducible E IX88_17635 PF07715 TonB-dependent Receptor Plug Domain IX88_17635 PF00593 TonB dependent receptor IX88_17645 PF01336 OB-fold nucleic acid binding domain IX88_17645 PF00152 tRNA synthetases class II (D, K and N) IX88_17645 PF02938 GAD domain IX88_17655 PF00534 Glycosyl transferases group 1 IX88_17655 PF13439 Glycosyltransferase Family 4 IX88_17660 PF00535 Glycosyl transferase family 2 IX88_17665 PF00534 Glycosyl transferases group 1 IX88_17665 PF13439 Glycosyltransferase Family 4 IX88_17685 PF00534 Glycosyl transferases group 1 IX88_17685 PF13439 Glycosyltransferase Family 4 IX88_17690 PF01522 Polysaccharide deacetylase IX88_17700 PF01063 Amino-transferase class IV IX88_17705 PF03710 Glutamate-ammonia ligase adenylyltransferase IX88_17705 PF08335 GlnD PII-uridylyltransferase IX88_17710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_17710 PF00512 His Kinase A (phospho-acceptor) domain IX88_17710 PF00672 HAMP domain IX88_17710 PF00072 Response regulator receiver domain IX88_17710 PF01627 Hpt domain IX88_17710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IX88_17730 PF02547 Queuosine biosynthesis protein IX88_17745 PF01702 Queuine tRNA-ribosyltransferase IX88_17750 PF02699 Preprotein translocase subunit IX88_17755 PF02355 Protein export membrane protein IX88_17755 PF13721 SecD export protein N-terminal TM region IX88_17755 PF07549 SecD/SecF GG Motif IX88_17760 PF02355 Protein export membrane protein IX88_17760 PF07549 SecD/SecF GG Motif IX88_17765 PF04127 DNA / pantothenate metabolism flavoprotein IX88_17765 PF02441 Flavoprotein IX88_17770 PF04002 RadC-like JAB domain IX88_17775 PF01062 Bestrophin, RFP-TM, chloride channel IX88_17780 PF02811 PHP domain IX88_17785 PF04279 Intracellular septation protein A IX88_17790 PF03795 YCII-related domain IX88_17800 PF01266 FAD dependent oxidoreductase IX88_17800 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IX88_17810 PF04461 Protein of unknown function (DUF520) IX88_17820 PF03061 Thioesterase superfamily IX88_17825 PF00085 Thioredoxin IX88_17830 PF00561 alpha/beta hydrolase fold IX88_17835 PF04273 Putative phosphatase (DUF442) IX88_17835 PF00753 Metallo-beta-lactamase superfamily IX88_17845 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_17845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_17880 PF00990 Diguanylate cyclase, GGDEF domain IX88_17880 PF17152 Periplasmic sensor domain IX88_17885 PF00691 OmpA family IX88_17885 PF01389 OmpA-like transmembrane domain IX88_17890 PF00149 Calcineurin-like phosphoesterase IX88_17890 PF10518 TAT (twin-arginine translocation) pathway signal sequence IX88_17895 PF13091 PLD-like domain IX88_17905 PF13167 GTP-binding GTPase N-terminal IX88_17905 PF16360 GTP-binding GTPase Middle Region IX88_17905 PF01926 50S ribosome-binding GTPase IX88_17925 PF00149 Calcineurin-like phosphoesterase IX88_17930 PF00398 Ribosomal RNA adenine dimethylase IX88_17935 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IX88_17940 PF00572 Ribosomal protein L13 IX88_17945 PF00380 Ribosomal protein S9/S16 IX88_17950 PF00043 Glutathione S-transferase, C-terminal domain IX88_17950 PF13417 Glutathione S-transferase, N-terminal domain IX88_17955 PF04386 Stringent starvation protein B IX88_17965 PF00289 Biotin carboxylase, N-terminal domain IX88_17965 PF00364 Biotin-requiring enzyme IX88_17965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_17965 PF02785 Biotin carboxylase C-terminal domain IX88_17970 PF00378 Enoyl-CoA hydratase/isomerase IX88_17975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_17975 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_17975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_17980 PF01039 Carboxyl transferase domain IX88_17995 PF00440 Bacterial regulatory proteins, tetR family IX88_17995 PF17932 Tetracyclin repressor-like, C-terminal domain IX88_18000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_18000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_18000 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_18045 PF01066 CDP-alcohol phosphatidyltransferase IX88_18050 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IX88_18070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IX88_18070 PF00056 lactate/malate dehydrogenase, NAD binding domain IX88_18080 PF10145 Phage-related minor tail protein IX88_18080 PF01464 Transglycosylase SLT domain IX88_18080 PF01551 Peptidase family M23 IX88_18085 PF00919 Uncharacterized protein family UPF0004 IX88_18085 PF01938 TRAM domain IX88_18085 PF04055 Radical SAM superfamily IX88_18090 PF02562 PhoH-like protein IX88_18095 PF02130 Uncharacterized protein family UPF0054 IX88_18120 PF03358 NADPH-dependent FMN reductase IX88_18125 PF03631 Virulence factor BrkB IX88_18130 PF00892 EamA-like transporter family IX88_18135 PF12833 Helix-turn-helix domain IX88_18140 PF01557 Fumarylacetoacetate (FAA) hydrolase family IX88_18190 PF17876 Cold shock domain IX88_18190 PF08461 Ribonuclease R winged-helix domain IX88_18190 PF00575 S1 RNA binding domain IX88_18190 PF00773 RNB domain IX88_18190 PF08206 Ribonuclease B OB domain IX88_18195 PF01432 Peptidase family M3 IX88_18200 PF09526 Probable metal-binding protein (DUF2387) IX88_18235 PF03937 Flavinator of succinate dehydrogenase IX88_18240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_18240 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_18240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_18245 PF00743 Flavin-binding monooxygenase-like IX88_18250 PF01196 Ribosomal protein L17 IX88_18255 PF01000 RNA polymerase Rpb3/RpoA insert domain IX88_18255 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IX88_18255 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IX88_18260 PF00163 Ribosomal protein S4/S9 N-terminal domain IX88_18260 PF01479 S4 domain IX88_18265 PF00411 Ribosomal protein S11 IX88_18270 PF00416 Ribosomal protein S13/S18 IX88_18275 PF00444 Ribosomal protein L36 IX88_18280 PF00344 SecY translocase IX88_18285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IX88_18290 PF00327 Ribosomal protein L30p/L7e IX88_18305 PF00347 Ribosomal protein L6