IX88_00040 SM00662 RNA polymerases D IX88_00045 SM00363 S4 RNA-binding domain IX88_00045 SM01390 IX88_00045 IX88_00110 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IX88_00115 SM01374 IX88_00115 IX88_00135 SM00322 K homology RNA-binding domain IX88_00150 SM01382 IX88_00150 IX88_00150 SM01383 IX88_00150 IX88_00170 SM01403 IX88_00170 IX88_00220 SM00563 Phosphate acyltransferases IX88_00235 SM00487 DEAD-like helicases superfamily IX88_00235 SM00490 helicase superfamily c-terminal domain IX88_00280 SM00382 ATPases associated with a variety of cellular activities IX88_00290 SM00487 DEAD-like helicases superfamily IX88_00290 SM00490 helicase superfamily c-terminal domain IX88_00300 SM00861 Transketolase, pyrimidine binding domain IX88_00340 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_00440 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_00625 SM00072 Guanylate kinase homologues. IX88_00630 SM01409 IX88_00630 IX88_00635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX88_00635 SM00954 Region found in RelA / SpoT proteins IX88_00715 SM00965 Secretin and TonB N terminus short domain IX88_00735 SM00842 Cell division protein FtsA IX88_00880 SM00671 Sel1-like repeats. IX88_00885 SM00382 ATPases associated with a variety of cellular activities IX88_00900 SM00947 Carbonic anhydrase IX88_00905 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_00905 SM00732 Likely ribonuclease with RNase H fold. IX88_00910 SM00448 cheY-homologous receiver domain IX88_00910 SM00862 Transcriptional regulatory protein, C terminal IX88_00915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX88_00915 SM00387 Histidine kinase-like ATPases IX88_00915 SM00388 His Kinase A (phosphoacceptor) domain IX88_00960 SM00474 3'-5' exonuclease IX88_00970 SM00382 ATPases associated with a variety of cellular activities IX88_00975 SM00530 Helix-turn-helix XRE-family like proteins IX88_00990 SM00357 Cold shock protein domain IX88_01010 SM00342 helix_turn_helix, arabinose operon control protein IX88_01030 SM00477 DNA/RNA non-specific endonuclease IX88_01030 SM00892 DNA/RNA non-specific endonuclease IX88_01075 SM00255 Toll - interleukin 1 - resistance IX88_01100 SM00342 helix_turn_helix, arabinose operon control protein IX88_01190 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_01200 SM00530 Helix-turn-helix XRE-family like proteins IX88_01245 SM00829 Enoylreductase IX88_01260 SM00267 diguanylate cyclase IX88_01290 SM00387 Histidine kinase-like ATPases IX88_01290 SM00388 His Kinase A (phosphoacceptor) domain IX88_01290 SM00448 cheY-homologous receiver domain IX88_01300 SM00421 helix_turn_helix, Lux Regulon IX88_01300 SM00448 cheY-homologous receiver domain IX88_01315 SM00344 helix_turn_helix ASNC type IX88_01355 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX88_01360 SM00937 IX88_01360 IX88_01385 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_01385 SM01240 IX88_01385 IX88_01395 SM00849 Metallo-beta-lactamase superfamily IX88_01440 SM00864 Tubulin/FtsZ family, GTPase domain IX88_01440 SM00865 Tubulin/FtsZ family, C-terminal domain IX88_01445 SM00842 Cell division protein FtsA IX88_01510 SM00267 diguanylate cyclase IX88_01575 SM00387 Histidine kinase-like ATPases IX88_01575 SM00433 TopoisomeraseII IX88_01695 SM00448 cheY-homologous receiver domain IX88_01695 SM00862 Transcriptional regulatory protein, C terminal IX88_01700 SM00387 Histidine kinase-like ATPases IX88_01700 SM00388 His Kinase A (phosphoacceptor) domain IX88_01715 SM00450 Rhodanese Homology Domain IX88_01830 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_01830 SM00866 IX88_01830 IX88_01840 SM00833 Cobalamin synthesis protein cobW C-terminal domain IX88_01870 SM00346 helix_turn_helix isocitrate lyase regulation IX88_01900 SM01130 IX88_01900 IX88_01925 SM00382 ATPases associated with a variety of cellular activities IX88_01955 SM00478 endonuclease III IX88_01955 SM00525 IX88_01955 IX88_01975 SM00829 Enoylreductase IX88_01980 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_02020 SM00271 DnaJ molecular chaperone homology domain IX88_02170 SM00382 ATPases associated with a variety of cellular activities IX88_02185 SM00387 Histidine kinase-like ATPases IX88_02185 SM00433 TopoisomeraseII IX88_02195 SM00480 DNA polymerase III beta subunit IX88_02200 SM00382 ATPases associated with a variety of cellular activities IX88_02200 SM00760 Bacterial dnaA protein helix-turn-helix domain IX88_02215 SM01234 IX88_02215 IX88_02285 SM00014 Acid phosphatase homologues IX88_02305 SM01001 AIR carboxylase IX88_02325 SM00235 Zinc-dependent metalloprotease IX88_02330 SM00235 Zinc-dependent metalloprotease IX88_02350 SM00849 Metallo-beta-lactamase superfamily IX88_02400 SM00248 ankyrin repeats IX88_02425 SM00904 Riboflavin kinase IX88_02445 SM00382 ATPases associated with a variety of cellular activities IX88_02460 SM00062 Bacterial periplasmic substrate-binding proteins IX88_02465 SM00062 Bacterial periplasmic substrate-binding proteins IX88_02555 SM00644 IX88_02555 IX88_02580 SM00226 Low molecular weight phosphatase family IX88_02590 SM00984 UDP binding domain IX88_02635 SM00984 UDP binding domain IX88_02665 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_02665 SM00895 IX88_02665 IX88_02685 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_02685 SM00895 IX88_02685 IX88_02780 SM00344 helix_turn_helix ASNC type IX88_02790 SM01005 Alanine racemase, C-terminal domain IX88_02860 SM00421 helix_turn_helix, Lux Regulon IX88_02875 SM00823 Phosphopantetheine attachment site IX88_02875 SM01294 IX88_02875 IX88_02880 SM00823 Phosphopantetheine attachment site IX88_02880 SM00824 Thioesterase IX88_02995 SM00836 DALR anticodon binding domain IX88_02995 SM01016 Arginyl tRNA synthetase N terminal dom IX88_03000 SM00919 Malic enzyme, NAD binding domain IX88_03000 SM01274 IX88_03000 IX88_03020 SM00382 ATPases associated with a variety of cellular activities IX88_03070 SM00382 ATPases associated with a variety of cellular activities IX88_03090 SM00342 helix_turn_helix, arabinose operon control protein IX88_03205 SM00422 helix_turn_helix, mercury resistance IX88_03215 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_03235 SM00641 Glycosyl hydrolases family 25 IX88_03250 SM01091 Transporter associated domain IX88_03270 SM00434 DNA Topoisomerase IV IX88_03305 SM01130 IX88_03305 IX88_03310 SM01007 Class II Aldolase and Adducin N-terminal domain IX88_03315 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_03320 SM00382 ATPases associated with a variety of cellular activities IX88_03330 SM00938 Nitrogen regulatory protein P-II IX88_03395 SM00245 tail specific protease IX88_03400 SM00382 ATPases associated with a variety of cellular activities IX88_03400 SM00448 cheY-homologous receiver domain IX88_03405 SM00387 Histidine kinase-like ATPases IX88_03405 SM00388 His Kinase A (phosphoacceptor) domain IX88_03410 SM00421 helix_turn_helix, Lux Regulon IX88_03410 SM00448 cheY-homologous receiver domain IX88_03440 SM00899 IX88_03440 IX88_03530 SM00448 cheY-homologous receiver domain IX88_03530 SM00850 LytTr DNA-binding domain IX88_03560 SM00528 Domain in histone-like proteins of HNS family IX88_03570 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_03580 SM00240 Forkhead associated domain IX88_03640 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IX88_03640 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IX88_03645 SM00649 Ribosomal protein L11/L12 IX88_03670 SM00663 RNA polymerase I subunit A N-terminus IX88_03785 SM00387 Histidine kinase-like ATPases IX88_03810 SM00422 helix_turn_helix, mercury resistance IX88_03845 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_03845 SM00465 GIY-YIG type nucleases (URI domain) IX88_03860 SM00342 helix_turn_helix, arabinose operon control protein IX88_03870 SM00346 helix_turn_helix isocitrate lyase regulation IX88_03890 SM00732 Likely ribonuclease with RNase H fold. IX88_03905 SM00028 Tetratricopeptide repeats IX88_03915 SM00967 RNA 2'-O ribose methyltransferase substrate binding IX88_03980 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_04085 SM00382 ATPases associated with a variety of cellular activities IX88_04095 SM01387 IX88_04095 IX88_04100 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_04100 SM00322 K homology RNA-binding domain IX88_04115 SM00271 DnaJ molecular chaperone homology domain IX88_04135 SM00487 DEAD-like helicases superfamily IX88_04135 SM00490 helicase superfamily c-terminal domain IX88_04165 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_04165 SM01091 Transporter associated domain IX88_04205 SM00849 Metallo-beta-lactamase superfamily IX88_04270 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_04300 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_04305 SM00363 S4 RNA-binding domain IX88_04345 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IX88_04385 SM01329 IX88_04385 IX88_04400 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_04405 SM00342 helix_turn_helix, arabinose operon control protein IX88_04415 SM00870 IX88_04415 IX88_04430 SM00859 Semialdehyde dehydrogenase, NAD binding domain IX88_04465 SM00382 ATPases associated with a variety of cellular activities IX88_04475 SM00829 Enoylreductase IX88_04490 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain IX88_04490 SM00437 Bacterial DNA topoisomerase I DNA-binding domain IX88_04490 SM00493 IX88_04490 IX88_04510 SM00360 RNA recognition motif IX88_04650 SM00671 Sel1-like repeats. IX88_04665 SM00917 LeuA allosteric (dimerisation) domain IX88_04670 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IX88_04690 SM00382 ATPases associated with a variety of cellular activities IX88_04690 SM00994 ClpX C4-type zinc finger IX88_04690 SM01086 C-terminal, D2-small domain, of ClpB protein IX88_04770 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_04770 SM00245 tail specific protease IX88_04780 SM00014 Acid phosphatase homologues IX88_04790 SM00562 IX88_04790 IX88_04800 SM00028 Tetratricopeptide repeats IX88_04825 SM00564 beta-propeller repeat IX88_04850 SM00450 Rhodanese Homology Domain IX88_04860 SM00479 IX88_04860 IX88_04880 SM00382 ATPases associated with a variety of cellular activities IX88_04935 SM00052 Putative diguanylate phosphodiesterase IX88_04950 SM01236 IX88_04950 IX88_05040 SM01002 Alanine dehydrogenase/PNT, C-terminal domain IX88_05040 SM01003 Alanine dehydrogenase/PNT, N-terminal domain IX88_05080 SM00073 Histidine Phosphotransfer domain IX88_05080 SM00387 Histidine kinase-like ATPases IX88_05080 SM00388 His Kinase A (phosphoacceptor) domain IX88_05080 SM00448 cheY-homologous receiver domain IX88_05100 SM00954 Region found in RelA / SpoT proteins IX88_05115 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_05160 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IX88_05215 SM00873 B3/4 domain IX88_05215 SM00874 tRNA synthetase B5 domain IX88_05215 SM00896 Ferredoxin-fold anticodon binding domain IX88_05220 SM00411 bacterial (prokaryotic) histone like domain IX88_05230 SM00357 Cold shock protein domain IX88_05230 SM00382 ATPases associated with a variety of cellular activities IX88_05230 SM00959 Rho termination factor, N-terminal domain IX88_05250 SM00977 TilS substrate C-terminal domain IX88_05265 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs IX88_05265 SM00474 3'-5' exonuclease IX88_05265 SM00475 5'-3' exonuclease IX88_05265 SM00482 DNA polymerase A domain IX88_05285 SM00382 ATPases associated with a variety of cellular activities IX88_05295 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_05315 SM00331 Sigma factor PP2C-like phosphatases IX88_05640 SM00903 Flavin reductase like domain IX88_05720 SM00448 cheY-homologous receiver domain IX88_05720 SM00862 Transcriptional regulatory protein, C terminal IX88_05725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX88_05725 SM00387 Histidine kinase-like ATPases IX88_05725 SM00388 His Kinase A (phosphoacceptor) domain IX88_05735 SM00267 diguanylate cyclase IX88_05760 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IX88_05765 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX88_05765 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IX88_05810 SM00357 Cold shock protein domain IX88_05955 SM00382 ATPases associated with a variety of cellular activities IX88_05955 SM00962 SRP54-type protein, GTPase domain IX88_05955 SM00963 SRP54-type protein, helical bundle domain IX88_05975 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_05985 SM00771 ZipA, C-terminal domain (FtsZ-binding) IX88_05990 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_05990 SM00292 breast cancer carboxy-terminal domain IX88_05990 SM00532 Ligase N family IX88_06040 SM00363 S4 RNA-binding domain IX88_06075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IX88_06080 SM00822 IX88_06080 IX88_06090 SM00257 Lysin motif IX88_06135 SM01400 IX88_06135 IX88_06170 SM00028 Tetratricopeptide repeats IX88_06180 SM00400 zinc finger IX88_06180 SM00493 IX88_06180 IX88_06190 SM00363 S4 RNA-binding domain IX88_06235 SM01329 IX88_06235 IX88_06295 SM00825 Beta-ketoacyl synthase IX88_06315 SM00838 Elongation factor G C-terminus IX88_06315 SM00889 Elongation factor G, domain IV IX88_06355 SM00843 IX88_06355 IX88_06390 SM00563 Phosphate acyltransferases IX88_06460 SM00382 ATPases associated with a variety of cellular activities IX88_06510 SM01004 Delta-aminolevulinic acid dehydratase IX88_06555 SM00487 DEAD-like helicases superfamily IX88_06590 SM01130 IX88_06590 IX88_06690 SM01322 IX88_06690 IX88_06730 SM00346 helix_turn_helix isocitrate lyase regulation IX88_06750 SM00822 IX88_06750 IX88_06820 SM00342 helix_turn_helix, arabinose operon control protein IX88_06845 SM00822 IX88_06845 IX88_06860 SM00861 Transketolase, pyrimidine binding domain IX88_06870 SM01018 B12 binding domain IX88_06935 SM00947 Carbonic anhydrase IX88_06945 SM00382 ATPases associated with a variety of cellular activities IX88_07045 SM01091 Transporter associated domain IX88_07095 SM00988 UreE urease accessory protein, N-terminal domain IX88_07145 SM00478 endonuclease III IX88_07155 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_07175 SM00382 ATPases associated with a variety of cellular activities IX88_07175 SM00464 Found in ATP-dependent protease La (LON) IX88_07235 SM01011 Aminopeptidase P, N-terminal domain IX88_07255 SM00422 helix_turn_helix, mercury resistance IX88_07310 SM00479 IX88_07310 IX88_07315 SM00257 Lysin motif IX88_07335 SM00382 ATPases associated with a variety of cellular activities IX88_07365 SM00479 IX88_07365 IX88_07375 SM00267 diguanylate cyclase IX88_07485 SM00422 helix_turn_helix, mercury resistance IX88_07505 SM00422 helix_turn_helix, mercury resistance IX88_07530 SM00422 helix_turn_helix, mercury resistance IX88_07560 SM00487 DEAD-like helicases superfamily IX88_07635 SM00671 Sel1-like repeats. IX88_07640 SM00671 Sel1-like repeats. IX88_07690 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_07690 SM00895 IX88_07690 IX88_07705 SM00344 helix_turn_helix ASNC type IX88_07730 SM00342 helix_turn_helix, arabinose operon control protein IX88_07740 SM00858 IX88_07740 IX88_07750 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IX88_07755 SM01130 IX88_07755 IX88_07765 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_07765 SM00895 IX88_07765 IX88_07815 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_07820 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_07820 SM00895 IX88_07820 IX88_07865 SM00342 helix_turn_helix, arabinose operon control protein IX88_07955 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IX88_07960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_07970 SM00788 Adenylosuccinate synthetase IX88_07990 SM00100 Cyclic nucleotide-monophosphate binding domain IX88_07990 SM00419 helix_turn_helix, cAMP Regulatory protein IX88_08010 SM00382 ATPases associated with a variety of cellular activities IX88_08010 SM01086 C-terminal, D2-small domain, of ClpB protein IX88_08025 SM00981 IX88_08025 IX88_08105 SM00382 ATPases associated with a variety of cellular activities IX88_08105 SM00487 DEAD-like helicases superfamily IX88_08105 SM00490 helicase superfamily c-terminal domain IX88_08105 SM00847 Helicase associated domain (HA2) Add an annotation IX88_08165 SM00422 helix_turn_helix, mercury resistance IX88_08215 SM00530 Helix-turn-helix XRE-family like proteins IX88_08240 SM00357 Cold shock protein domain IX88_08310 SM00840 IX88_08310 IX88_08315 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_08335 SM00382 ATPases associated with a variety of cellular activities IX88_08345 SM00382 ATPases associated with a variety of cellular activities IX88_08390 SM00533 DNA-binding domain of DNA mismatch repair MUTS family IX88_08390 SM00534 ATPase domain of DNA mismatch repair MUTS family IX88_08395 SM00344 helix_turn_helix ASNC type IX88_08405 SM00052 Putative diguanylate phosphodiesterase IX88_08430 SM00422 helix_turn_helix, mercury resistance IX88_08515 SM00796 Allophanate hydrolase subunit 1 IX88_08515 SM00797 Allophanate hydrolase subunit 2 IX88_08520 SM00878 Biotin carboxylase C-terminal domain IX88_08535 SM00912 haemagglutination activity domain IX88_08585 SM00342 helix_turn_helix, arabinose operon control protein IX88_08615 SM01060 IX88_08615 IX88_08635 SM00346 helix_turn_helix isocitrate lyase regulation IX88_08645 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_08645 SM00866 IX88_08645 IX88_08655 SM00382 ATPases associated with a variety of cellular activities IX88_08695 SM00346 helix_turn_helix isocitrate lyase regulation IX88_08715 SM00346 helix_turn_helix isocitrate lyase regulation IX88_08750 SM00882 Coenzyme A transferase IX88_08755 SM00882 Coenzyme A transferase IX88_08800 SM00878 Biotin carboxylase C-terminal domain IX88_08885 SM01236 IX88_08885 IX88_08890 SM01060 IX88_08890 IX88_08905 SM00384 DNA binding domain with preference for A/T rich regions IX88_08925 SM00344 helix_turn_helix ASNC type IX88_08935 SM00387 Histidine kinase-like ATPases IX88_08935 SM00388 His Kinase A (phosphoacceptor) domain IX88_08935 SM00448 cheY-homologous receiver domain IX88_08940 SM00421 helix_turn_helix, Lux Regulon IX88_08940 SM00448 cheY-homologous receiver domain IX88_08960 SM00382 ATPases associated with a variety of cellular activities IX88_08965 SM00062 Bacterial periplasmic substrate-binding proteins IX88_08970 SM00062 Bacterial periplasmic substrate-binding proteins IX88_09000 SM00450 Rhodanese Homology Domain IX88_09005 SM00822 IX88_09005 IX88_09040 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_09100 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IX88_09120 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_09165 SM00062 Bacterial periplasmic substrate-binding proteins IX88_09170 SM00382 ATPases associated with a variety of cellular activities IX88_09195 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_09195 SM00895 IX88_09195 IX88_09225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX88_09275 SM00481 DNA polymerase alpha chain like domain IX88_09280 SM00870 IX88_09280 IX88_09305 SM00342 helix_turn_helix, arabinose operon control protein IX88_09320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX88_09355 SM00100 Cyclic nucleotide-monophosphate binding domain IX88_09355 SM00419 helix_turn_helix, cAMP Regulatory protein IX88_09375 SM00382 ATPases associated with a variety of cellular activities IX88_09375 SM00930 IX88_09375 IX88_09410 SM00062 Bacterial periplasmic substrate-binding proteins IX88_09425 SM00382 ATPases associated with a variety of cellular activities IX88_09435 SM00344 helix_turn_helix ASNC type IX88_09445 SM00563 Phosphate acyltransferases IX88_09555 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_09555 SM00876 Biotin and Thiamin Synthesis associated domain IX88_09575 SM00530 Helix-turn-helix XRE-family like proteins IX88_09610 SM00861 Transketolase, pyrimidine binding domain IX88_09620 SM00867 YceI-like domain IX88_09660 SM00344 helix_turn_helix ASNC type IX88_09680 SM00342 helix_turn_helix, arabinose operon control protein IX88_09690 SM00382 ATPases associated with a variety of cellular activities IX88_09710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX88_09720 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. IX88_09780 SM00470 ParB-like nuclease domain IX88_09795 SM00382 ATPases associated with a variety of cellular activities IX88_09855 SM00986 Uracil DNA glycosylase superfamily IX88_09855 SM00987 UreE urease accessory protein, C-terminal domain IX88_09880 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_09885 SM00411 bacterial (prokaryotic) histone like domain IX88_09895 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family IX88_09910 SM00342 helix_turn_helix, arabinose operon control protein IX88_09980 SM00382 ATPases associated with a variety of cellular activities IX88_10035 SM00487 DEAD-like helicases superfamily IX88_10035 SM00490 helicase superfamily c-terminal domain IX88_10035 SM00982 IX88_10035 IX88_10035 SM01058 CarD-like/TRCF domain IX88_10045 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain IX88_10060 SM00271 DnaJ molecular chaperone homology domain IX88_10095 SM00411 bacterial (prokaryotic) histone like domain IX88_10105 SM00342 helix_turn_helix, arabinose operon control protein IX88_10195 SM01006 Siderophore biosynthesis protein domain IX88_10225 SM00855 Phosphoglycerate mutase family IX88_10285 SM00382 ATPases associated with a variety of cellular activities IX88_10325 SM01324 IX88_10325 IX88_10375 SM00493 IX88_10375 IX88_10380 SM00341 Helicase and RNase D C-terminal IX88_10380 SM00474 3'-5' exonuclease IX88_10410 SM00382 ATPases associated with a variety of cellular activities IX88_10435 SM00267 diguanylate cyclase IX88_10450 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_10460 SM00861 Transketolase, pyrimidine binding domain IX88_10480 SM00829 Enoylreductase IX88_10490 SM00382 ATPases associated with a variety of cellular activities IX88_10495 SM00849 Metallo-beta-lactamase superfamily IX88_10520 SM00342 helix_turn_helix, arabinose operon control protein IX88_10540 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_10540 SM00866 IX88_10540 IX88_10610 SM00882 Coenzyme A transferase IX88_10615 SM00882 Coenzyme A transferase IX88_10660 SM00342 helix_turn_helix, arabinose operon control protein IX88_10685 SM00903 Flavin reductase like domain IX88_10695 SM00342 helix_turn_helix, arabinose operon control protein IX88_10730 SM00382 ATPases associated with a variety of cellular activities IX88_10775 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_10800 SM00155 Phospholipase D. Active site motifs. IX88_10825 SM00829 Enoylreductase IX88_10940 SM00448 cheY-homologous receiver domain IX88_10940 SM00862 Transcriptional regulatory protein, C terminal IX88_10965 SM00342 helix_turn_helix, arabinose operon control protein IX88_10975 SM00822 IX88_10975 IX88_10980 SM00822 IX88_10980 IX88_11010 SM00530 Helix-turn-helix XRE-family like proteins IX88_11085 SM01400 IX88_11085 IX88_11095 SM00342 helix_turn_helix, arabinose operon control protein IX88_11105 SM00382 ATPases associated with a variety of cellular activities IX88_11120 SM00829 Enoylreductase IX88_11135 SM00342 helix_turn_helix, arabinose operon control protein IX88_11225 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_11225 SM00866 IX88_11225 IX88_11260 SM00912 haemagglutination activity domain IX88_11335 SM00422 helix_turn_helix, mercury resistance IX88_11385 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_11385 SM00895 IX88_11385 IX88_11400 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IX88_11415 SM00882 Coenzyme A transferase IX88_11420 SM00882 Coenzyme A transferase IX88_11455 SM00342 helix_turn_helix, arabinose operon control protein IX88_11460 SM00903 Flavin reductase like domain IX88_11505 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_11530 SM00855 Phosphoglycerate mutase family IX88_11550 SM00346 helix_turn_helix isocitrate lyase regulation IX88_11555 SM00849 Metallo-beta-lactamase superfamily IX88_11575 SM00564 beta-propeller repeat IX88_11585 SM00710 Parallel beta-helix repeats IX88_11620 SM00998 Adenylosuccinate lyase C-terminus IX88_11630 SM00882 Coenzyme A transferase IX88_11635 SM00882 Coenzyme A transferase IX88_11655 SM01192 IX88_11655 IX88_11655 SM01193 IX88_11655 IX88_11720 SM00382 ATPases associated with a variety of cellular activities IX88_11720 SM01086 C-terminal, D2-small domain, of ClpB protein IX88_11735 SM00859 Semialdehyde dehydrogenase, NAD binding domain IX88_11775 SM01264 IX88_11775 IX88_11840 SM00382 ATPases associated with a variety of cellular activities IX88_11840 SM00962 SRP54-type protein, GTPase domain IX88_11840 SM00963 SRP54-type protein, helical bundle domain IX88_11865 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_11935 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_11945 SM00052 Putative diguanylate phosphodiesterase IX88_11945 SM00091 PAS domain IX88_11945 SM00267 diguanylate cyclase IX88_11990 SM00344 helix_turn_helix ASNC type IX88_12020 SM00363 S4 RNA-binding domain IX88_12025 SM00382 ATPases associated with a variety of cellular activities IX88_12060 SM00935 Outer membrane protein (OmpH-like) IX88_12070 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_12100 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_12105 SM00091 PAS domain IX88_12105 SM00387 Histidine kinase-like ATPases IX88_12105 SM00388 His Kinase A (phosphoacceptor) domain IX88_12110 SM00382 ATPases associated with a variety of cellular activities IX88_12110 SM00448 cheY-homologous receiver domain IX88_12195 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_12205 SM00852 Probable molybdopterin binding domain IX88_12210 SM00852 Probable molybdopterin binding domain IX88_12225 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_12230 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX88_12240 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX88_12260 SM00448 cheY-homologous receiver domain IX88_12260 SM01012 IX88_12260 IX88_12285 SM00878 Biotin carboxylase C-terminal domain IX88_12370 SM00232 JAB/MPN domain IX88_12590 SM00507 HNH nucleases IX88_12605 SM00382 ATPases associated with a variety of cellular activities IX88_12640 SM00530 Helix-turn-helix XRE-family like proteins IX88_12705 SM01236 IX88_12705 IX88_12740 SM00226 Low molecular weight phosphatase family IX88_12770 SM00382 ATPases associated with a variety of cellular activities IX88_12805 SM00822 IX88_12805 IX88_12835 SM00344 helix_turn_helix ASNC type IX88_12850 SM00831 Cation transporter/ATPase, N-terminus IX88_12875 SM00382 ATPases associated with a variety of cellular activities IX88_12955 SM00344 helix_turn_helix ASNC type IX88_12960 SM00830 Chorismate mutase type II IX88_12980 SM00972 Spore Coat Protein U domain IX88_12995 SM00972 Spore Coat Protein U domain IX88_13020 SM00342 helix_turn_helix, arabinose operon control protein IX88_13020 SM00871 Bacterial transcription activator, effector binding domain IX88_13030 SM00382 ATPases associated with a variety of cellular activities IX88_13045 SM00862 Transcriptional regulatory protein, C terminal IX88_13115 SM00853 MutL C terminal dimerisation domain IX88_13115 SM01340 IX88_13115 IX88_13140 SM00363 S4 RNA-binding domain IX88_13220 SM01230 IX88_13220 IX88_13225 SM00448 cheY-homologous receiver domain IX88_13225 SM00862 Transcriptional regulatory protein, C terminal IX88_13230 SM00387 Histidine kinase-like ATPases IX88_13230 SM00388 His Kinase A (phosphoacceptor) domain IX88_13255 SM00905 Dihydroneopterin aldolase IX88_13270 SM00903 Flavin reductase like domain IX88_13285 SM00822 IX88_13285 IX88_13290 SM00342 helix_turn_helix, arabinose operon control protein IX88_13295 SM00062 Bacterial periplasmic substrate-binding proteins IX88_13310 SM00937 IX88_13310 IX88_13425 SM01005 Alanine racemase, C-terminal domain IX88_13435 SM00460 Transglutaminase/protease-like homologues IX88_13460 SM01228 IX88_13460 IX88_13485 SM00798 AICARFT/IMPCHase bienzyme IX88_13485 SM00851 MGS-like domain IX88_13490 SM01209 IX88_13490 IX88_13490 SM01210 IX88_13490 IX88_13500 SM00382 ATPases associated with a variety of cellular activities IX88_13500 SM00930 IX88_13500 IX88_13510 SM00849 Metallo-beta-lactamase superfamily IX88_13570 SM00448 cheY-homologous receiver domain IX88_13570 SM00862 Transcriptional regulatory protein, C terminal IX88_13575 SM00388 His Kinase A (phosphoacceptor) domain IX88_13615 SM00387 Histidine kinase-like ATPases IX88_13615 SM00388 His Kinase A (phosphoacceptor) domain IX88_13620 SM00448 cheY-homologous receiver domain IX88_13620 SM00862 Transcriptional regulatory protein, C terminal IX88_13630 SM00095 Transthyretin IX88_13685 SM00972 Spore Coat Protein U domain IX88_13710 SM00972 Spore Coat Protein U domain IX88_13725 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_13725 SM00895 IX88_13725 IX88_13745 SM00342 helix_turn_helix, arabinose operon control protein IX88_13760 SM01034 Sensors of blue-light using FAD IX88_13870 SM00220 Serine/Threonine protein kinases, catalytic domain IX88_14005 SM00028 Tetratricopeptide repeats IX88_14150 SM00507 HNH nucleases IX88_14180 SM00382 ATPases associated with a variety of cellular activities IX88_14205 SM00530 Helix-turn-helix XRE-family like proteins IX88_14275 SM00465 GIY-YIG type nucleases (URI domain) IX88_14290 SM00855 Phosphoglycerate mutase family IX88_14310 SM00487 DEAD-like helicases superfamily IX88_14310 SM00490 helicase superfamily c-terminal domain IX88_14315 SM00357 Cold shock protein domain IX88_14380 SM00830 Chorismate mutase type II IX88_14435 SM00387 Histidine kinase-like ATPases IX88_14435 SM00388 His Kinase A (phosphoacceptor) domain IX88_14440 SM00448 cheY-homologous receiver domain IX88_14440 SM00862 Transcriptional regulatory protein, C terminal IX88_14450 SM00382 ATPases associated with a variety of cellular activities IX88_14475 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_14530 SM00479 IX88_14530 IX88_14545 SM00382 ATPases associated with a variety of cellular activities IX88_14595 SM00342 helix_turn_helix, arabinose operon control protein IX88_14645 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_14665 SM00996 S-adenosyl-L-homocysteine hydrolase IX88_14665 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IX88_14680 SM00052 Putative diguanylate phosphodiesterase IX88_14680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IX88_14680 SM00091 PAS domain IX88_14680 SM00267 diguanylate cyclase IX88_14685 SM00919 Malic enzyme, NAD binding domain IX88_14685 SM01274 IX88_14685 IX88_14695 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_14750 SM01230 IX88_14750 IX88_14795 SM00060 Fibronectin type 3 domain IX88_14965 SM00507 HNH nucleases IX88_14975 SM00382 ATPases associated with a variety of cellular activities IX88_15010 SM00530 Helix-turn-helix XRE-family like proteins IX88_15105 SM00463 Small MutS-related domain IX88_15115 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IX88_15120 SM01092 CO dehydrogenase flavoprotein C-terminal domain IX88_15175 SM00382 ATPases associated with a variety of cellular activities IX88_15180 SM00382 ATPases associated with a variety of cellular activities IX88_15225 SM00382 ATPases associated with a variety of cellular activities IX88_15305 SM00841 Elongation factor P, C-terminal IX88_15305 SM01185 IX88_15305 IX88_15320 SM00052 Putative diguanylate phosphodiesterase IX88_15355 SM00257 Lysin motif IX88_15375 SM00936 Penicillin-binding protein 5, C-terminal domain IX88_15420 SM00382 ATPases associated with a variety of cellular activities IX88_15450 SM00344 helix_turn_helix ASNC type IX88_15505 SM00487 DEAD-like helicases superfamily IX88_15505 SM00490 helicase superfamily c-terminal domain IX88_15535 SM00880 IX88_15535 IX88_15535 SM01118 IX88_15535 IX88_15590 SM01329 IX88_15590 IX88_15690 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IX88_15710 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_15725 SM00487 DEAD-like helicases superfamily IX88_15725 SM00490 helicase superfamily c-terminal domain IX88_15735 SM00267 diguanylate cyclase IX88_15800 SM00358 Double-stranded RNA binding motif IX88_15800 SM00535 Ribonuclease III family IX88_15815 SM00838 Elongation factor G C-terminus IX88_15825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_15875 SM00382 ATPases associated with a variety of cellular activities IX88_15950 SM01211 IX88_15950 IX88_15955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX88_15960 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_15965 SM00382 ATPases associated with a variety of cellular activities IX88_16080 SM00849 Metallo-beta-lactamase superfamily IX88_16085 SM00382 ATPases associated with a variety of cellular activities IX88_16155 SM00434 DNA Topoisomerase IV IX88_16160 SM00893 Electron transfer flavoprotein domain IX88_16165 SM00893 Electron transfer flavoprotein domain IX88_16200 SM00382 ATPases associated with a variety of cellular activities IX88_16205 SM00978 IX88_16205 IX88_16290 SM00422 helix_turn_helix, mercury resistance IX88_16470 SM00849 Metallo-beta-lactamase superfamily IX88_16485 SM00883 Chaperonin 10 Kd subunit IX88_16495 SM00046 Diacylglycerol kinase catalytic domain (presumed) IX88_16575 SM00382 ATPases associated with a variety of cellular activities IX88_16585 SM01103 IX88_16585 IX88_16600 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain IX88_16605 SM00851 MGS-like domain IX88_16605 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IX88_16635 SM00854 Bacterial capsule synthesis protein PGA_cap IX88_16675 SM00881 CoA binding domain IX88_16695 SM00861 Transketolase, pyrimidine binding domain IX88_16735 SM00450 Rhodanese Homology Domain IX88_16840 SM00014 Acid phosphatase homologues IX88_16875 SM00822 IX88_16875 IX88_16920 SM00387 Histidine kinase-like ATPases IX88_16920 SM00388 His Kinase A (phosphoacceptor) domain IX88_16925 SM00448 cheY-homologous receiver domain IX88_16925 SM00862 Transcriptional regulatory protein, C terminal IX88_16950 SM00563 Phosphate acyltransferases IX88_16965 SM00244 prohibitin homologues IX88_17000 SM00829 Enoylreductase IX88_17005 SM00342 helix_turn_helix, arabinose operon control protein IX88_17025 SM00342 helix_turn_helix, arabinose operon control protein IX88_17060 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_17095 SM00845 GatB domain IX88_17240 SM00073 Histidine Phosphotransfer domain IX88_17240 SM00260 Two component signalling adaptor domain IX88_17240 SM00387 Histidine kinase-like ATPases IX88_17240 SM00448 cheY-homologous receiver domain IX88_17240 SM01231 IX88_17240 IX88_17245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IX88_17250 SM00260 Two component signalling adaptor domain IX88_17255 SM00448 cheY-homologous receiver domain IX88_17260 SM00448 cheY-homologous receiver domain IX88_17315 SM00671 Sel1-like repeats. IX88_17340 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain IX88_17340 SM01232 IX88_17340 IX88_17360 SM00838 Elongation factor G C-terminus IX88_17425 SM00564 beta-propeller repeat IX88_17440 SM00342 helix_turn_helix, arabinose operon control protein IX88_17490 SM00957 SecA DEAD-like domain IX88_17490 SM00958 SecA preprotein cross-linking domain IX88_17500 SM00849 Metallo-beta-lactamase superfamily IX88_17530 SM00342 helix_turn_helix, arabinose operon control protein IX88_17590 SM00448 cheY-homologous receiver domain IX88_17590 SM00862 Transcriptional regulatory protein, C terminal IX88_17595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX88_17595 SM00387 Histidine kinase-like ATPases IX88_17595 SM00388 His Kinase A (phosphoacceptor) domain IX88_17710 SM00387 Histidine kinase-like ATPases IX88_17710 SM00388 His Kinase A (phosphoacceptor) domain IX88_17750 SM01323 IX88_17750 IX88_17780 SM00481 DNA polymerase alpha chain like domain IX88_17805 SM00450 Rhodanese Homology Domain IX88_17880 SM00267 diguanylate cyclase IX88_17895 SM00155 Phospholipase D. Active site motifs. IX88_17900 SM00563 Phosphate acyltransferases IX88_17930 SM00650 Ribosomal RNA adenine dimethylases IX88_17965 SM00878 Biotin carboxylase C-terminal domain IX88_18055 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IX88_18085 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_18135 SM00342 helix_turn_helix, arabinose operon control protein IX88_18190 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_18190 SM00955 IX88_18190 IX88_18255 SM00662 RNA polymerases D IX88_18260 SM00363 S4 RNA-binding domain IX88_18260 SM01390 IX88_18260