locus-tag class description ABBFA_000001 PF00308 Bacterial dnaA protein ABBFA_000001 PF08299 Bacterial dnaA protein helix-turn-helix ABBFA_000001 PF11638 DnaA N-terminal domain ABBFA_000002 PF00712 DNA polymerase III beta subunit, N-terminal domain ABBFA_000002 PF02767 DNA polymerase III beta subunit, central domain ABBFA_000002 PF02768 DNA polymerase III beta subunit, C-terminal domain ABBFA_000003 PF02463 RecF/RecN/SMC N terminal domain ABBFA_000004 PF00204 DNA gyrase B ABBFA_000004 PF00986 DNA gyrase B subunit, carboxyl terminus ABBFA_000004 PF18053 DNA gyrase B subunit insert domain ABBFA_000004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000004 PF01751 Toprim domain ABBFA_000006 PF09335 SNARE associated Golgi protein ABBFA_000007 PF12848 ABC transporter ABBFA_000007 PF00005 ABC transporter ABBFA_000011 PF01521 Iron-sulphur cluster biosynthesis ABBFA_000012 PF00561 alpha/beta hydrolase fold ABBFA_000013 PF03702 Anhydro-N-acetylmuramic acid kinase ABBFA_000014 PF00579 tRNA synthetases class I (W and Y) ABBFA_000022 PF00209 Sodium:neurotransmitter symporter family ABBFA_000024 PF01029 NusB family ABBFA_000024 PF01189 16S rRNA methyltransferase RsmB/F ABBFA_000025 PF00551 Formyl transferase ABBFA_000025 PF02911 Formyl transferase, C-terminal domain ABBFA_000026 PF00920 Dehydratase family ABBFA_000029 PF03466 LysR substrate binding domain ABBFA_000029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000030 PF00860 Permease family ABBFA_000031 PF00311 Phosphoenolpyruvate carboxylase ABBFA_000032 PF08361 MAATS-type transcriptional repressor, C-terminal region ABBFA_000032 PF00440 Bacterial regulatory proteins, tetR family ABBFA_000033 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_000034 PF00873 AcrB/AcrD/AcrF family ABBFA_000036 PF00226 DnaJ domain ABBFA_000036 PF01556 DnaJ C terminal domain ABBFA_000036 PF00684 DnaJ central domain ABBFA_000038 PF05173 Dihydrodipicolinate reductase, C-terminus ABBFA_000038 PF01113 Dihydrodipicolinate reductase, N-terminus ABBFA_000040 PF07690 Major Facilitator Superfamily ABBFA_000041 PF00248 Aldo/keto reductase family ABBFA_000042 PF03466 LysR substrate binding domain ABBFA_000042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000044 PF00155 Aminotransferase class I and II ABBFA_000044 PF00392 Bacterial regulatory proteins, gntR family ABBFA_000045 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_000045 PF00107 Zinc-binding dehydrogenase ABBFA_000046 PF03352 Methyladenine glycosylase ABBFA_000049 PF14815 NUDIX domain ABBFA_000049 PF00633 Helix-hairpin-helix motif ABBFA_000049 PF10576 Iron-sulfur binding domain of endonuclease III ABBFA_000049 PF00730 HhH-GPD superfamily base excision DNA repair protein ABBFA_000052 PF07043 Protein of unknown function (DUF1328) ABBFA_000053 PF03692 Putative zinc- or iron-chelating domain ABBFA_000054 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_000055 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_000055 PF12002 MgsA AAA+ ATPase C terminal ABBFA_000055 PF16193 AAA C-terminal domain ABBFA_000056 PF01226 Formate/nitrite transporter ABBFA_000058 PF01259 SAICAR synthetase ABBFA_000060 PF00701 Dihydrodipicolinate synthetase family ABBFA_000061 PF00857 Isochorismatase family ABBFA_000062 PF01758 Sodium Bile acid symporter family ABBFA_000063 PF01554 MatE ABBFA_000064 PF04463 Protein of unknown function (DUF523) ABBFA_000065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_000067 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_000068 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_000068 PF14497 Glutathione S-transferase, C-terminal domain ABBFA_000070 PF00324 Amino acid permease ABBFA_000072 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABBFA_000072 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABBFA_000074 PF07702 UTRA domain ABBFA_000074 PF00392 Bacterial regulatory proteins, gntR family ABBFA_000075 PF05962 HutD ABBFA_000076 PF17391 Urocanase N-terminal domain ABBFA_000076 PF17392 Urocanase C-terminal domain ABBFA_000076 PF01175 Urocanase Rossmann-like domain ABBFA_000077 PF00221 Aromatic amino acid lyase ABBFA_000078 PF00324 Amino acid permease ABBFA_000079 PF01979 Amidohydrolase family ABBFA_000080 PF00491 Arginase family ABBFA_000083 PF01177 Asp/Glu/Hydantoin racemase ABBFA_000085 PF00145 C-5 cytosine-specific DNA methylase ABBFA_000086 PF08676 MutL C terminal dimerisation domain ABBFA_000086 PF01119 DNA mismatch repair protein, C-terminal domain ABBFA_000088 PF01380 SIS domain ABBFA_000089 PF12804 MobA-like NTP transferase domain ABBFA_000089 PF14602 Hexapeptide repeat of succinyl-transferase ABBFA_000089 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_000090 PF04608 Phosphatidylglycerophosphatase A ABBFA_000092 PF00586 AIR synthase related protein, N-terminal domain ABBFA_000092 PF02769 AIR synthase related protein, C-terminal domain ABBFA_000093 PF01029 NusB family ABBFA_000094 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABBFA_000095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABBFA_000095 PF00925 GTP cyclohydrolase II ABBFA_000100 PF02580 D-Tyr-tRNA(Tyr) deacylase ABBFA_000101 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABBFA_000101 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABBFA_000102 PF00581 Rhodanese-like domain ABBFA_000103 PF02666 Phosphatidylserine decarboxylase ABBFA_000105 PF11808 Phosphate regulon sensor protein PhoR ABBFA_000105 PF00989 PAS fold ABBFA_000105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000105 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_000106 PF00486 Transcriptional regulatory protein, C terminal ABBFA_000106 PF00072 Response regulator receiver domain ABBFA_000108 PF00106 short chain dehydrogenase ABBFA_000109 PF01554 MatE ABBFA_000110 PF00155 Aminotransferase class I and II ABBFA_000111 PF04286 Protein of unknown function (DUF445) ABBFA_000114 PF04262 Glutamate-cysteine ligase ABBFA_000115 PF02600 Disulfide bond formation protein DsbB ABBFA_000116 PF04717 Type VI secretion system, phage-baseplate injector ABBFA_000117 PF01510 N-acetylmuramoyl-L-alanine amidase ABBFA_000117 PF01476 LysM domain ABBFA_000117 PF01471 Putative peptidoglycan binding domain ABBFA_000123 PF05728 Uncharacterised protein family (UPF0227) ABBFA_000124 PF00204 DNA gyrase B ABBFA_000124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000124 PF01751 Toprim domain ABBFA_000124 PF00986 DNA gyrase B subunit, carboxyl terminus ABBFA_000125 PF04115 Ureidoglycolate lyase ABBFA_000126 PF03561 Allantoicase repeat ABBFA_000127 PF01494 FAD binding domain ABBFA_000129 PF00860 Permease family ABBFA_000130 PF00576 HIUase/Transthyretin family ABBFA_000136 PF11412 Disulphide bond corrector protein DsbC ABBFA_000136 PF02683 Cytochrome C biogenesis protein transmembrane region ABBFA_000137 PF07859 alpha/beta hydrolase fold ABBFA_000139 PF03960 ArsC family ABBFA_000140 PF03372 Endonuclease/Exonuclease/phosphatase family ABBFA_000141 PF00156 Phosphoribosyl transferase domain ABBFA_000142 PF07715 TonB-dependent Receptor Plug Domain ABBFA_000142 PF00593 TonB dependent receptor ABBFA_000144 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ABBFA_000144 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ABBFA_000145 PF04101 Glycosyltransferase family 28 C-terminal domain ABBFA_000145 PF03033 Glycosyltransferase family 28 N-terminal domain ABBFA_000146 PF08245 Mur ligase middle domain ABBFA_000146 PF02875 Mur ligase family, glutamate ligase domain ABBFA_000146 PF01225 Mur ligase family, catalytic domain ABBFA_000147 PF07478 D-ala D-ala ligase C-terminus ABBFA_000147 PF01820 D-ala D-ala ligase N-terminus ABBFA_000148 PF08478 POTRA domain, FtsQ-type ABBFA_000148 PF03799 Cell division protein FtsQ ABBFA_000149 PF02491 SHS2 domain inserted in FTSA ABBFA_000150 PF12327 FtsZ family, C-terminal domain ABBFA_000150 PF00091 Tubulin/FtsZ family, GTPase domain ABBFA_000151 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABBFA_000153 PF01551 Peptidase family M23 ABBFA_000154 PF00456 Transketolase, thiamine diphosphate binding domain ABBFA_000154 PF17831 Pyruvate dehydrogenase E1 component middle domain ABBFA_000155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABBFA_000155 PF00364 Biotin-requiring enzyme ABBFA_000155 PF02817 e3 binding domain ABBFA_000157 PF01169 Uncharacterized protein family UPF0016 ABBFA_000158 PF07715 TonB-dependent Receptor Plug Domain ABBFA_000158 PF00593 TonB dependent receptor ABBFA_000159 PF00258 Flavodoxin ABBFA_000159 PF01613 Flavin reductase like domain ABBFA_000160 PF03692 Putative zinc- or iron-chelating domain ABBFA_000161 PF00571 CBS domain ABBFA_000161 PF00478 IMP dehydrogenase / GMP reductase domain ABBFA_000162 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABBFA_000162 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABBFA_000162 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABBFA_000162 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABBFA_000163 PF17768 RecJ OB domain ABBFA_000163 PF02272 DHHA1 domain ABBFA_000163 PF01368 DHH family ABBFA_000165 PF03462 PCRF domain ABBFA_000165 PF00472 RF-1 domain ABBFA_000167 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_000168 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABBFA_000169 PF00924 Mechanosensitive ion channel ABBFA_000172 PF13193 AMP-binding enzyme C-terminal domain ABBFA_000172 PF00501 AMP-binding enzyme ABBFA_000172 PF16177 Acetyl-coenzyme A synthetase N-terminus ABBFA_000173 PF00857 Isochorismatase family ABBFA_000174 PF01037 Lrp/AsnC ligand binding domain ABBFA_000175 PF00296 Luciferase-like monooxygenase ABBFA_000176 PF03358 NADPH-dependent FMN reductase ABBFA_000177 PF00072 Response regulator receiver domain ABBFA_000177 PF00196 Bacterial regulatory proteins, luxR family ABBFA_000179 PF00072 Response regulator receiver domain ABBFA_000179 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_000179 PF01627 Hpt domain ABBFA_000179 PF00672 HAMP domain ABBFA_000179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000180 PF04341 Protein of unknown function, DUF485 ABBFA_000181 PF00474 Sodium:solute symporter family ABBFA_000183 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_000185 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_000185 PF17158 Membrane-associated sensor, integral membrane domain ABBFA_000186 PF00005 ABC transporter ABBFA_000186 PF17755 UvrA DNA-binding domain ABBFA_000186 PF17760 UvrA interaction domain ABBFA_000187 PF16925 Tetracyclin repressor-like, C-terminal domain ABBFA_000187 PF00440 Bacterial regulatory proteins, tetR family ABBFA_000188 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_000188 PF00107 Zinc-binding dehydrogenase ABBFA_000190 PF06942 GlpM protein ABBFA_000191 PF08543 Phosphomethylpyrimidine kinase ABBFA_000191 PF03070 TENA/THI-4/PQQC family ABBFA_000191 PF02581 Thiamine monophosphate synthase ABBFA_000193 PF07690 Major Facilitator Superfamily ABBFA_000194 PF00436 Single-strand binding protein family ABBFA_000196 PF03591 AzlC protein ABBFA_000198 PF00324 Amino acid permease ABBFA_000199 PF00392 Bacterial regulatory proteins, gntR family ABBFA_000199 PF00155 Aminotransferase class I and II ABBFA_000200 PF00202 Aminotransferase class-III ABBFA_000201 PF00171 Aldehyde dehydrogenase family ABBFA_000202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000203 PF00857 Isochorismatase family ABBFA_000204 PF02678 Pirin ABBFA_000204 PF05726 Pirin C-terminal cupin domain ABBFA_000205 PF01593 Flavin containing amine oxidoreductase ABBFA_000209 PF01555 DNA methylase ABBFA_000210 PF09516 CfrBI restriction endonuclease ABBFA_000214 PF12102 Domain of unknown function (DUF3578) ABBFA_000214 PF07728 AAA domain (dynein-related subfamily) ABBFA_000221 PF12146 Serine aminopeptidase, S33 ABBFA_000222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000222 PF03466 LysR substrate binding domain ABBFA_000223 PF13533 Biotin-lipoyl like ABBFA_000225 PF17932 Tetracyclin repressor-like, C-terminal domain ABBFA_000225 PF00440 Bacterial regulatory proteins, tetR family ABBFA_000239 PF01037 Lrp/AsnC ligand binding domain ABBFA_000243 PF07690 Major Facilitator Superfamily ABBFA_000244 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000244 PF03466 LysR substrate binding domain ABBFA_000248 PF00248 Aldo/keto reductase family ABBFA_000249 PF02311 AraC-like ligand binding domain ABBFA_000249 PF12833 Helix-turn-helix domain ABBFA_000252 PF01638 HxlR-like helix-turn-helix ABBFA_000255 PF01638 HxlR-like helix-turn-helix ABBFA_000256 PF02525 Flavodoxin-like fold ABBFA_000258 PF13302 Acetyltransferase (GNAT) domain ABBFA_000260 PF02705 K+ potassium transporter ABBFA_000266 PF00230 Major intrinsic protein ABBFA_000269 PF00977 Histidine biosynthesis protein ABBFA_000270 PF01636 Phosphotransferase enzyme family ABBFA_000275 PF00977 Histidine biosynthesis protein ABBFA_000278 PF00117 Glutamine amidotransferase class-I ABBFA_000279 PF00475 Imidazoleglycerol-phosphate dehydratase ABBFA_000283 PF00583 Acetyltransferase (GNAT) family ABBFA_000284 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABBFA_000284 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABBFA_000285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000285 PF00672 HAMP domain ABBFA_000285 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_000286 PF00486 Transcriptional regulatory protein, C terminal ABBFA_000286 PF00072 Response regulator receiver domain ABBFA_000287 PF17674 HHH domain ABBFA_000287 PF00575 S1 RNA binding domain ABBFA_000287 PF09371 Tex-like protein N-terminal domain ABBFA_000287 PF16921 Tex protein YqgF-like domain ABBFA_000288 PF01740 STAS domain ABBFA_000288 PF00916 Sulfate permease family ABBFA_000289 PF00106 short chain dehydrogenase ABBFA_000290 PF01053 Cys/Met metabolism PLP-dependent enzyme ABBFA_000291 PF12848 ABC transporter ABBFA_000291 PF00005 ABC transporter ABBFA_000297 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_000297 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_000298 PF00873 AcrB/AcrD/AcrF family ABBFA_000299 PF01545 Cation efflux family ABBFA_000305 PF00324 Amino acid permease ABBFA_000308 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABBFA_000311 PF01795 MraW methylase family ABBFA_000313 PF03717 Penicillin-binding Protein dimerisation domain ABBFA_000313 PF00905 Penicillin binding protein transpeptidase domain ABBFA_000314 PF08245 Mur ligase middle domain ABBFA_000314 PF01225 Mur ligase family, catalytic domain ABBFA_000314 PF02875 Mur ligase family, glutamate ligase domain ABBFA_000315 PF01225 Mur ligase family, catalytic domain ABBFA_000315 PF02875 Mur ligase family, glutamate ligase domain ABBFA_000315 PF08245 Mur ligase middle domain ABBFA_000317 PF13847 Methyltransferase domain ABBFA_000318 PF00912 Transglycosylase ABBFA_000318 PF00905 Penicillin binding protein transpeptidase domain ABBFA_000318 PF17092 Penicillin-binding protein OB-like domain ABBFA_000323 PF00263 Bacterial type II and III secretion system protein ABBFA_000323 PF11741 AMIN domain ABBFA_000323 PF03958 Bacterial type II/III secretion system short domain ABBFA_000323 PF07660 Secretin and TonB N terminus short domain ABBFA_000324 PF01202 Shikimate kinase ABBFA_000325 PF01761 3-dehydroquinate synthase ABBFA_000327 PF01645 Conserved region in glutamate synthase ABBFA_000327 PF01493 GXGXG motif ABBFA_000327 PF00310 Glutamine amidotransferases class-II ABBFA_000327 PF04898 Glutamate synthase central domain ABBFA_000328 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABBFA_000328 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_000330 PF04011 LemA family ABBFA_000331 PF04536 TPM domain ABBFA_000333 PF00114 Pilin (bacterial filament) ABBFA_000333 PF07963 Prokaryotic N-terminal methylation motif ABBFA_000334 PF11846 Virulence factor membrane-bound polymerase, C-terminal ABBFA_000334 PF15864 Protein glycosylation ligase ABBFA_000334 PF04932 O-Antigen ligase ABBFA_000335 PF00210 Ferritin-like domain ABBFA_000336 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_000337 PF01042 Endoribonuclease L-PSP ABBFA_000338 PF13291 ACT domain ABBFA_000338 PF04607 Region found in RelA / SpoT proteins ABBFA_000338 PF02824 TGS domain ABBFA_000339 PF01192 RNA polymerase Rpb6 ABBFA_000340 PF00625 Guanylate kinase ABBFA_000341 PF02401 LytB protein ABBFA_000348 PF00886 Ribosomal protein S16 ABBFA_000349 PF01782 RimM N-terminal domain ABBFA_000349 PF05239 PRC-barrel domain ABBFA_000350 PF01746 tRNA (Guanine-1)-methyltransferase ABBFA_000351 PF01245 Ribosomal protein L19 ABBFA_000352 PF00561 alpha/beta hydrolase fold ABBFA_000353 PF03280 Proteobacterial lipase chaperone protein ABBFA_000354 PF09157 Pseudouridine synthase II TruB, C-terminal ABBFA_000354 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABBFA_000354 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABBFA_000355 PF01925 Sulfite exporter TauE/SafE ABBFA_000357 PF00892 EamA-like transporter family ABBFA_000358 PF00892 EamA-like transporter family ABBFA_000359 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABBFA_000359 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABBFA_000360 PF02913 FAD linked oxidases, C-terminal domain ABBFA_000360 PF01565 FAD binding domain ABBFA_000362 PF03992 Antibiotic biosynthesis monooxygenase ABBFA_000363 PF02525 Flavodoxin-like fold ABBFA_000365 PF07690 Major Facilitator Superfamily ABBFA_000366 PF12805 FUSC-like inner membrane protein yccS ABBFA_000367 PF00080 Copper/zinc superoxide dismutase (SODC) ABBFA_000368 PF01594 AI-2E family transporter ABBFA_000369 PF13614 AAA domain ABBFA_000373 PF08241 Methyltransferase domain ABBFA_000375 PF00324 Amino acid permease ABBFA_000376 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABBFA_000376 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABBFA_000377 PF00202 Aminotransferase class-III ABBFA_000378 PF04958 Arginine N-succinyltransferase beta subunit ABBFA_000379 PF00171 Aldehyde dehydrogenase family ABBFA_000380 PF04996 Succinylarginine dihydrolase ABBFA_000381 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABBFA_000387 PF03466 LysR substrate binding domain ABBFA_000387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000388 PF00892 EamA-like transporter family ABBFA_000392 PF05746 DALR anticodon binding domain ABBFA_000392 PF02092 Glycyl-tRNA synthetase beta subunit ABBFA_000393 PF02091 Glycyl-tRNA synthetase alpha subunit ABBFA_000394 PF07690 Major Facilitator Superfamily ABBFA_000397 PF00571 CBS domain ABBFA_000398 PF04024 PspC domain ABBFA_000400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_000400 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_000400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_000400 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_000402 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABBFA_000402 PF01488 Shikimate / quinate 5-dehydrogenase ABBFA_000402 PF08501 Shikimate dehydrogenase substrate binding domain ABBFA_000403 PF01218 Coproporphyrinogen III oxidase ABBFA_000404 PF00925 GTP cyclohydrolase II ABBFA_000405 PF02779 Transketolase, pyrimidine binding domain ABBFA_000405 PF02780 Transketolase, C-terminal domain ABBFA_000405 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABBFA_000406 PF00459 Inositol monophosphatase family ABBFA_000407 PF00270 DEAD/DEAH box helicase ABBFA_000407 PF12343 Cold shock protein DEAD box A ABBFA_000407 PF03880 DbpA RNA binding domain ABBFA_000407 PF00271 Helicase conserved C-terminal domain ABBFA_000409 PF00005 ABC transporter ABBFA_000410 PF02405 Permease MlaE ABBFA_000412 PF05494 MlaC protein ABBFA_000414 PF01544 CorA-like Mg2+ transporter protein ABBFA_000415 PF03641 Possible lysine decarboxylase ABBFA_000416 PF00293 NUDIX domain ABBFA_000417 PF00156 Phosphoribosyl transferase domain ABBFA_000418 PF17191 RecG wedge domain ABBFA_000418 PF00271 Helicase conserved C-terminal domain ABBFA_000418 PF00270 DEAD/DEAH box helicase ABBFA_000421 PF01553 Acyltransferase ABBFA_000423 PF00375 Sodium:dicarboxylate symporter family ABBFA_000425 PF01926 50S ribosome-binding GTPase ABBFA_000426 PF02082 Transcriptional regulator ABBFA_000427 PF00042 Globin ABBFA_000427 PF00175 Oxidoreductase NAD-binding domain ABBFA_000427 PF00970 Oxidoreductase FAD-binding domain ABBFA_000428 PF05872 Bacterial protein of unknown function (DUF853) ABBFA_000429 PF01053 Cys/Met metabolism PLP-dependent enzyme ABBFA_000430 PF00117 Glutamine amidotransferase class-I ABBFA_000431 PF00338 Ribosomal protein S10p/S20e ABBFA_000432 PF00297 Ribosomal protein L3 ABBFA_000433 PF00573 Ribosomal protein L4/L1 family ABBFA_000434 PF00276 Ribosomal protein L23 ABBFA_000435 PF00181 Ribosomal Proteins L2, RNA binding domain ABBFA_000435 PF03947 Ribosomal Proteins L2, C-terminal domain ABBFA_000436 PF00203 Ribosomal protein S19 ABBFA_000437 PF00237 Ribosomal protein L22p/L17e ABBFA_000438 PF00189 Ribosomal protein S3, C-terminal domain ABBFA_000438 PF07650 KH domain ABBFA_000439 PF00252 Ribosomal protein L16p/L10e ABBFA_000440 PF00831 Ribosomal L29 protein ABBFA_000441 PF00366 Ribosomal protein S17 ABBFA_000442 PF00238 Ribosomal protein L14p/L23e ABBFA_000443 PF00467 KOW motif ABBFA_000443 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABBFA_000444 PF00673 ribosomal L5P family C-terminus ABBFA_000444 PF00281 Ribosomal protein L5 ABBFA_000445 PF00253 Ribosomal protein S14p/S29e ABBFA_000446 PF00410 Ribosomal protein S8 ABBFA_000447 PF00347 Ribosomal protein L6 ABBFA_000448 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABBFA_000449 PF03719 Ribosomal protein S5, C-terminal domain ABBFA_000449 PF00333 Ribosomal protein S5, N-terminal domain ABBFA_000450 PF00327 Ribosomal protein L30p/L7e ABBFA_000451 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABBFA_000452 PF00344 SecY translocase ABBFA_000453 PF00444 Ribosomal protein L36 ABBFA_000454 PF00416 Ribosomal protein S13/S18 ABBFA_000455 PF00411 Ribosomal protein S11 ABBFA_000456 PF00163 Ribosomal protein S4/S9 N-terminal domain ABBFA_000456 PF01479 S4 domain ABBFA_000457 PF01000 RNA polymerase Rpb3/RpoA insert domain ABBFA_000457 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABBFA_000457 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABBFA_000458 PF01196 Ribosomal protein L17 ABBFA_000459 PF00743 Flavin-binding monooxygenase-like ABBFA_000460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_000460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_000460 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_000461 PF03937 Flavinator of succinate dehydrogenase ABBFA_000467 PF09526 Probable metal-binding protein (DUF2387) ABBFA_000468 PF01432 Peptidase family M3 ABBFA_000469 PF08461 Ribonuclease R winged-helix domain ABBFA_000469 PF00575 S1 RNA binding domain ABBFA_000469 PF17876 Cold shock domain ABBFA_000469 PF00773 RNB domain ABBFA_000469 PF08206 Ribonuclease B OB domain ABBFA_000478 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABBFA_000479 PF12833 Helix-turn-helix domain ABBFA_000480 PF00892 EamA-like transporter family ABBFA_000481 PF03631 Virulence factor BrkB ABBFA_000482 PF03358 NADPH-dependent FMN reductase ABBFA_000487 PF02130 Uncharacterized protein family UPF0054 ABBFA_000488 PF02562 PhoH-like protein ABBFA_000489 PF01938 TRAM domain ABBFA_000489 PF00919 Uncharacterized protein family UPF0004 ABBFA_000489 PF04055 Radical SAM superfamily ABBFA_000490 PF01464 Transglycosylase SLT domain ABBFA_000490 PF10145 Phage-related minor tail protein ABBFA_000490 PF01551 Peptidase family M23 ABBFA_000492 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABBFA_000492 PF00056 lactate/malate dehydrogenase, NAD binding domain ABBFA_000496 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ABBFA_000497 PF01066 CDP-alcohol phosphatidyltransferase ABBFA_000504 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_000504 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_000504 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_000505 PF00440 Bacterial regulatory proteins, tetR family ABBFA_000505 PF17932 Tetracyclin repressor-like, C-terminal domain ABBFA_000508 PF01039 Carboxyl transferase domain ABBFA_000509 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_000509 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_000509 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_000511 PF00364 Biotin-requiring enzyme ABBFA_000511 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_000511 PF00289 Biotin carboxylase, N-terminal domain ABBFA_000511 PF02785 Biotin carboxylase C-terminal domain ABBFA_000513 PF04386 Stringent starvation protein B ABBFA_000514 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_000514 PF13417 Glutathione S-transferase, N-terminal domain ABBFA_000515 PF00380 Ribosomal protein S9/S16 ABBFA_000516 PF00572 Ribosomal protein L13 ABBFA_000517 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABBFA_000518 PF00149 Calcineurin-like phosphoesterase ABBFA_000522 PF13167 GTP-binding GTPase N-terminal ABBFA_000522 PF16360 GTP-binding GTPase Middle Region ABBFA_000522 PF01926 50S ribosome-binding GTPase ABBFA_000523 PF13091 PLD-like domain ABBFA_000524 PF00149 Calcineurin-like phosphoesterase ABBFA_000524 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABBFA_000525 PF01389 OmpA-like transmembrane domain ABBFA_000525 PF00691 OmpA family ABBFA_000526 PF17152 Periplasmic sensor domain ABBFA_000526 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_000531 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_000531 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_000533 PF00753 Metallo-beta-lactamase superfamily ABBFA_000533 PF04273 Putative phosphatase (DUF442) ABBFA_000534 PF00561 alpha/beta hydrolase fold ABBFA_000535 PF03061 Thioesterase superfamily ABBFA_000537 PF04461 Protein of unknown function (DUF520) ABBFA_000539 PF01266 FAD dependent oxidoreductase ABBFA_000539 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABBFA_000541 PF03795 YCII-related domain ABBFA_000542 PF04279 Intracellular septation protein A ABBFA_000543 PF02811 PHP domain ABBFA_000544 PF01062 Bestrophin, RFP-TM, chloride channel ABBFA_000545 PF04002 RadC-like JAB domain ABBFA_000546 PF02441 Flavoprotein ABBFA_000546 PF04127 DNA / pantothenate metabolism flavoprotein ABBFA_000547 PF02355 Protein export membrane protein ABBFA_000547 PF07549 SecD/SecF GG Motif ABBFA_000548 PF02355 Protein export membrane protein ABBFA_000548 PF07549 SecD/SecF GG Motif ABBFA_000548 PF13721 SecD export protein N-terminal TM region ABBFA_000549 PF02699 Preprotein translocase subunit ABBFA_000550 PF01702 Queuine tRNA-ribosyltransferase ABBFA_000553 PF02547 Queuosine biosynthesis protein ABBFA_000555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000555 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_000555 PF07689 KaiB domain ABBFA_000556 PF08335 GlnD PII-uridylyltransferase ABBFA_000556 PF03710 Glutamate-ammonia ligase adenylyltransferase ABBFA_000557 PF01063 Amino-transferase class IV ABBFA_000560 PF01522 Polysaccharide deacetylase ABBFA_000561 PF00535 Glycosyl transferase family 2 ABBFA_000562 PF00534 Glycosyl transferases group 1 ABBFA_000562 PF13439 Glycosyltransferase Family 4 ABBFA_000567 PF17102 Stealth protein CR3, conserved region 3 ABBFA_000567 PF17101 Stealth protein CR1, conserved region 1 ABBFA_000567 PF11380 Stealth protein CR2, conserved region 2 ABBFA_000568 PF01336 OB-fold nucleic acid binding domain ABBFA_000568 PF02938 GAD domain ABBFA_000568 PF00152 tRNA synthetases class II (D, K and N) ABBFA_000570 PF07715 TonB-dependent Receptor Plug Domain ABBFA_000570 PF00593 TonB dependent receptor ABBFA_000574 PF06146 Phosphate-starvation-inducible E ABBFA_000575 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_000575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_000575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_000575 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_000576 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_000576 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_000576 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_000576 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_000578 PF00672 HAMP domain ABBFA_000578 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_000578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000579 PF00072 Response regulator receiver domain ABBFA_000579 PF00486 Transcriptional regulatory protein, C terminal ABBFA_000580 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABBFA_000584 PF01923 Cobalamin adenosyltransferase ABBFA_000585 PF00593 TonB dependent receptor ABBFA_000585 PF07715 TonB-dependent Receptor Plug Domain ABBFA_000586 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABBFA_000587 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_000592 PF00290 Tryptophan synthase alpha chain ABBFA_000593 PF01039 Carboxyl transferase domain ABBFA_000594 PF02875 Mur ligase family, glutamate ligase domain ABBFA_000594 PF08245 Mur ligase middle domain ABBFA_000597 PF00753 Metallo-beta-lactamase superfamily ABBFA_000598 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABBFA_000598 PF00578 AhpC/TSA family ABBFA_000599 PF07517 SecA DEAD-like domain ABBFA_000599 PF01043 SecA preprotein cross-linking domain ABBFA_000599 PF07516 SecA Wing and Scaffold domain ABBFA_000599 PF02810 SEC-C motif ABBFA_000601 PF00083 Sugar (and other) transporter ABBFA_000601 PF07690 Major Facilitator Superfamily ABBFA_000602 PF03006 Haemolysin-III related ABBFA_000604 PF13673 Acetyltransferase (GNAT) domain ABBFA_000607 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_000607 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_000607 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_000609 PF00108 Thiolase, N-terminal domain ABBFA_000609 PF02803 Thiolase, C-terminal domain ABBFA_000610 PF12833 Helix-turn-helix domain ABBFA_000610 PF02311 AraC-like ligand binding domain ABBFA_000611 PF02515 CoA-transferase family III ABBFA_000612 PF04966 Carbohydrate-selective porin, OprB family ABBFA_000614 PF01011 PQQ enzyme repeat ABBFA_000615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABBFA_000615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABBFA_000617 PF00893 Small Multidrug Resistance protein ABBFA_000619 PF00108 Thiolase, N-terminal domain ABBFA_000619 PF02803 Thiolase, C-terminal domain ABBFA_000621 PF00691 OmpA family ABBFA_000621 PF13505 Outer membrane protein beta-barrel domain ABBFA_000623 PF01139 tRNA-splicing ligase RtcB ABBFA_000624 PF00324 Amino acid permease ABBFA_000625 PF05175 Methyltransferase small domain ABBFA_000625 PF08468 Methyltransferase small domain N-terminal ABBFA_000626 PF00860 Permease family ABBFA_000628 PF01741 Large-conductance mechanosensitive channel, MscL ABBFA_000631 PF06827 Zinc finger found in FPG and IleRS ABBFA_000631 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ABBFA_000631 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ABBFA_000632 PF02245 Methylpurine-DNA glycosylase (MPG) ABBFA_000633 PF07715 TonB-dependent Receptor Plug Domain ABBFA_000633 PF00593 TonB dependent receptor ABBFA_000634 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_000637 PF13098 Thioredoxin-like domain ABBFA_000637 PF10411 Disulfide bond isomerase protein N-terminus ABBFA_000638 PF01571 Aminomethyltransferase folate-binding domain ABBFA_000640 PF04343 Protein of unknown function, DUF488 ABBFA_000641 PF08274 PhnA Zinc-Ribbon ABBFA_000641 PF03831 PhnA domain ABBFA_000642 PF07411 Domain of unknown function (DUF1508) ABBFA_000643 PF04073 Aminoacyl-tRNA editing domain ABBFA_000643 PF03129 Anticodon binding domain ABBFA_000643 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABBFA_000644 PF00873 AcrB/AcrD/AcrF family ABBFA_000647 PF00072 Response regulator receiver domain ABBFA_000648 PF00072 Response regulator receiver domain ABBFA_000649 PF01584 CheW-like domain ABBFA_000650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABBFA_000650 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ABBFA_000651 PF00072 Response regulator receiver domain ABBFA_000651 PF01627 Hpt domain ABBFA_000651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000651 PF01584 CheW-like domain ABBFA_000653 PF04055 Radical SAM superfamily ABBFA_000653 PF06969 HemN C-terminal domain ABBFA_000655 PF01546 Peptidase family M20/M25/M40 ABBFA_000655 PF07687 Peptidase dimerisation domain ABBFA_000656 PF08085 Entericidin EcnA/B family ABBFA_000658 PF04304 Protein of unknown function (DUF454) ABBFA_000659 PF17969 L,D-transpeptidase C-terminal domain ABBFA_000659 PF03734 L,D-transpeptidase catalytic domain ABBFA_000667 PF00667 FAD binding domain ABBFA_000667 PF00258 Flavodoxin ABBFA_000667 PF00175 Oxidoreductase NAD-binding domain ABBFA_000669 PF12805 FUSC-like inner membrane protein yccS ABBFA_000670 PF07690 Major Facilitator Superfamily ABBFA_000671 PF00881 Nitroreductase family ABBFA_000674 PF01235 Sodium:alanine symporter family ABBFA_000675 PF01734 Patatin-like phospholipase ABBFA_000676 PF13291 ACT domain ABBFA_000676 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_000677 PF05992 SbmA/BacA-like family ABBFA_000682 PF02637 GatB domain ABBFA_000682 PF02934 GatB/GatE catalytic domain ABBFA_000683 PF01425 Amidase ABBFA_000684 PF02686 Glu-tRNAGln amidotransferase C subunit ABBFA_000686 PF04085 rod shape-determining protein MreC ABBFA_000688 PF02545 Maf-like protein ABBFA_000689 PF10150 Ribonuclease E/G family ABBFA_000689 PF00575 S1 RNA binding domain ABBFA_000691 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain ABBFA_000691 PF06974 Protein of unknown function (DUF1298) ABBFA_000692 PF01507 Phosphoadenosine phosphosulfate reductase family ABBFA_000695 PF02525 Flavodoxin-like fold ABBFA_000700 PF02673 Bacitracin resistance protein BacA ABBFA_000701 PF06719 AraC-type transcriptional regulator N-terminus ABBFA_000701 PF12833 Helix-turn-helix domain ABBFA_000702 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_000702 PF16197 Ketoacyl-synthetase C-terminal extension ABBFA_000702 PF00698 Acyl transferase domain ABBFA_000702 PF00109 Beta-ketoacyl synthase, N-terminal domain ABBFA_000702 PF08659 KR domain ABBFA_000702 PF02801 Beta-ketoacyl synthase, C-terminal domain ABBFA_000702 PF00550 Phosphopantetheine attachment site ABBFA_000702 PF09277 Erythronolide synthase, docking ABBFA_000702 PF14765 Polyketide synthase dehydratase ABBFA_000702 PF08990 Erythronolide synthase docking ABBFA_000703 PF01965 DJ-1/PfpI family ABBFA_000705 PF00324 Amino acid permease ABBFA_000707 PF04303 PrpF protein ABBFA_000708 PF00348 Polyprenyl synthetase ABBFA_000709 PF04237 YjbR ABBFA_000710 PF04237 YjbR ABBFA_000711 PF01145 SPFH domain / Band 7 family ABBFA_000713 PF01734 Patatin-like phospholipase ABBFA_000717 PF00884 Sulfatase ABBFA_000717 PF08019 Phosphoethanolamine transferase EptA/EptB ABBFA_000718 PF00072 Response regulator receiver domain ABBFA_000718 PF00486 Transcriptional regulatory protein, C terminal ABBFA_000719 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_000719 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_000719 PF08521 Two-component sensor kinase N-terminal ABBFA_000720 PF00909 Ammonium Transporter Family ABBFA_000721 PF03466 LysR substrate binding domain ABBFA_000721 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000725 PF10458 Valyl tRNA synthetase tRNA binding arm ABBFA_000725 PF08264 Anticodon-binding domain of tRNA ABBFA_000725 PF00133 tRNA synthetases class I (I, L, M and V) ABBFA_000729 PF01906 Putative heavy-metal-binding ABBFA_000730 PF01906 Putative heavy-metal-binding ABBFA_000731 PF02321 Outer membrane efflux protein ABBFA_000732 PF00873 AcrB/AcrD/AcrF family ABBFA_000733 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_000733 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_000734 PF01569 PAP2 superfamily ABBFA_000736 PF00348 Polyprenyl synthetase ABBFA_000737 PF00829 Ribosomal prokaryotic L21 protein ABBFA_000738 PF01016 Ribosomal L27 protein ABBFA_000739 PF03548 Outer membrane lipoprotein carrier protein LolA ABBFA_000741 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABBFA_000741 PF02403 Seryl-tRNA synthetase N-terminal domain ABBFA_000742 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABBFA_000742 PF10414 Sirohaem synthase dimerisation region ABBFA_000742 PF14824 Sirohaem biosynthesis protein central ABBFA_000743 PF00588 SpoU rRNA Methylase family ABBFA_000744 PF01638 HxlR-like helix-turn-helix ABBFA_000745 PF03358 NADPH-dependent FMN reductase ABBFA_000746 PF13520 Amino acid permease ABBFA_000747 PF00465 Iron-containing alcohol dehydrogenase ABBFA_000749 PF03099 Biotin/lipoate A/B protein ligase family ABBFA_000750 PF04359 Protein of unknown function (DUF493) ABBFA_000751 PF04542 Sigma-70 region 2 ABBFA_000751 PF04545 Sigma-70, region 4 ABBFA_000751 PF04539 Sigma-70 region 3 ABBFA_000751 PF03979 Sigma-70 factor, region 1.1 ABBFA_000751 PF04546 Sigma-70, non-essential region ABBFA_000751 PF00140 Sigma-70 factor, region 1.2 ABBFA_000757 PF00285 Citrate synthase, C-terminal domain ABBFA_000758 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABBFA_000759 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABBFA_000760 PF02910 Fumarate reductase flavoprotein C-term ABBFA_000760 PF00890 FAD binding domain ABBFA_000761 PF13085 2Fe-2S iron-sulfur cluster binding domain ABBFA_000763 PF02779 Transketolase, pyrimidine binding domain ABBFA_000763 PF16870 2-oxoglutarate dehydrogenase C-terminal ABBFA_000763 PF00676 Dehydrogenase E1 component ABBFA_000763 PF16078 2-oxoglutarate dehydrogenase N-terminus ABBFA_000764 PF02817 e3 binding domain ABBFA_000764 PF00364 Biotin-requiring enzyme ABBFA_000764 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABBFA_000765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_000765 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_000766 PF00549 CoA-ligase ABBFA_000766 PF08442 ATP-grasp domain ABBFA_000767 PF00549 CoA-ligase ABBFA_000767 PF02629 CoA binding domain ABBFA_000771 PF00579 tRNA synthetases class I (W and Y) ABBFA_000772 PF05661 Protein of unknown function (DUF808) ABBFA_000773 PF04228 Putative neutral zinc metallopeptidase ABBFA_000774 PF00999 Sodium/hydrogen exchanger family ABBFA_000780 PF09587 Bacterial capsule synthesis protein PGA_cap ABBFA_000782 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABBFA_000783 PF00582 Universal stress protein family ABBFA_000784 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_000785 PF01272 Transcription elongation factor, GreA/GreB, C-term ABBFA_000785 PF03449 Transcription elongation factor, N-terminal ABBFA_000786 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_000786 PF02142 MGS-like domain ABBFA_000786 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABBFA_000787 PF00117 Glutamine amidotransferase class-I ABBFA_000787 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABBFA_000790 PF01985 CRS1 / YhbY (CRM) domain ABBFA_000791 PF01728 FtsJ-like methyltransferase ABBFA_000792 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_000792 PF17862 AAA+ lid domain ABBFA_000792 PF06480 FtsH Extracellular ABBFA_000792 PF01434 Peptidase family M41 ABBFA_000793 PF00809 Pterin binding enzyme ABBFA_000797 PF09423 PhoD-like phosphatase ABBFA_000797 PF16655 PhoD-like phosphatase, N-terminal domain ABBFA_000800 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABBFA_000800 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABBFA_000803 PF00083 Sugar (and other) transporter ABBFA_000804 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABBFA_000804 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABBFA_000805 PF01266 FAD dependent oxidoreductase ABBFA_000805 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ABBFA_000806 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ABBFA_000806 PF01266 FAD dependent oxidoreductase ABBFA_000807 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ABBFA_000807 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ABBFA_000808 PF00781 Diacylglycerol kinase catalytic domain ABBFA_000809 PF00149 Calcineurin-like phosphoesterase ABBFA_000811 PF00166 Chaperonin 10 Kd subunit ABBFA_000812 PF00118 TCP-1/cpn60 chaperonin family ABBFA_000813 PF01219 Prokaryotic diacylglycerol kinase ABBFA_000814 PF00753 Metallo-beta-lactamase superfamily ABBFA_000815 PF03009 Glycerophosphoryl diester phosphodiesterase family ABBFA_000816 PF00873 AcrB/AcrD/AcrF family ABBFA_000818 PF01435 Peptidase family M48 ABBFA_000819 PF01464 Transglycosylase SLT domain ABBFA_000820 PF01171 PP-loop family ABBFA_000822 PF01464 Transglycosylase SLT domain ABBFA_000822 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_000823 PF01272 Transcription elongation factor, GreA/GreB, C-term ABBFA_000823 PF03449 Transcription elongation factor, N-terminal ABBFA_000826 PF00501 AMP-binding enzyme ABBFA_000826 PF00975 Thioesterase domain ABBFA_000826 PF00550 Phosphopantetheine attachment site ABBFA_000826 PF13193 AMP-binding enzyme C-terminal domain ABBFA_000826 PF00668 Condensation domain ABBFA_000832 PF00881 Nitroreductase family ABBFA_000835 PF02595 Glycerate kinase family ABBFA_000836 PF00384 Molybdopterin oxidoreductase ABBFA_000837 PF02634 FdhD/NarQ family ABBFA_000838 PF06803 Protein of unknown function (DUF1232) ABBFA_000839 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABBFA_000839 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABBFA_000839 PF11890 Domain of unknown function (DUF3410) ABBFA_000840 PF00152 tRNA synthetases class II (D, K and N) ABBFA_000843 PF18073 Rubredoxin metal binding domain ABBFA_000845 PF00324 Amino acid permease ABBFA_000847 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABBFA_000847 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABBFA_000848 PF01678 Diaminopimelate epimerase ABBFA_000849 PF00561 alpha/beta hydrolase fold ABBFA_000850 PF01810 LysE type translocator ABBFA_000851 PF00589 Phage integrase family ABBFA_000851 PF02899 Phage integrase, N-terminal SAM-like domain ABBFA_000852 PF01012 Electron transfer flavoprotein domain ABBFA_000853 PF00766 Electron transfer flavoprotein FAD-binding domain ABBFA_000853 PF01012 Electron transfer flavoprotein domain ABBFA_000854 PF00521 DNA gyrase/topoisomerase IV, subunit A ABBFA_000854 PF03989 DNA gyrase C-terminal domain, beta-propeller ABBFA_000857 PF00535 Glycosyl transferase family 2 ABBFA_000861 PF13533 Biotin-lipoyl like ABBFA_000864 PF00266 Aminotransferase class-V ABBFA_000867 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ABBFA_000869 PF12704 MacB-like periplasmic core domain ABBFA_000869 PF02687 FtsX-like permease family ABBFA_000870 PF00005 ABC transporter ABBFA_000871 PF03772 Competence protein ABBFA_000871 PF13567 Domain of unknown function (DUF4131) ABBFA_000871 PF00753 Metallo-beta-lactamase superfamily ABBFA_000872 PF01343 Peptidase family S49 ABBFA_000872 PF06965 Na+/H+ antiporter 1 ABBFA_000873 PF12697 Alpha/beta hydrolase family ABBFA_000874 PF00551 Formyl transferase ABBFA_000875 PF00586 AIR synthase related protein, N-terminal domain ABBFA_000875 PF02769 AIR synthase related protein, C-terminal domain ABBFA_000876 PF01594 AI-2E family transporter ABBFA_000877 PF11638 DnaA N-terminal domain ABBFA_000877 PF00308 Bacterial dnaA protein ABBFA_000877 PF08299 Bacterial dnaA protein helix-turn-helix ABBFA_000882 PF00588 SpoU rRNA Methylase family ABBFA_000882 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABBFA_000883 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABBFA_000885 PF00691 OmpA family ABBFA_000886 PF07676 WD40-like Beta Propeller Repeat ABBFA_000886 PF04052 TolB amino-terminal domain ABBFA_000888 PF02472 Biopolymer transport protein ExbD/TolR ABBFA_000889 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_000890 PF03061 Thioesterase superfamily ABBFA_000891 PF07687 Peptidase dimerisation domain ABBFA_000891 PF01546 Peptidase family M20/M25/M40 ABBFA_000892 PF05491 RuvB C-terminal winged helix domain ABBFA_000892 PF17864 RuvB AAA lid domain ABBFA_000892 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABBFA_000893 PF07499 RuvA, C-terminal domain ABBFA_000893 PF01330 RuvA N terminal domain ABBFA_000894 PF01966 HD domain ABBFA_000895 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABBFA_000895 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ABBFA_000895 PF02769 AIR synthase related protein, C-terminal domain ABBFA_000896 PF07690 Major Facilitator Superfamily ABBFA_000898 PF01784 NIF3 (NGG1p interacting factor 3) ABBFA_000899 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_000900 PF01467 Cytidylyltransferase-like ABBFA_000900 PF00293 NUDIX domain ABBFA_000902 PF00578 AhpC/TSA family ABBFA_000905 PF06508 Queuosine biosynthesis protein QueC ABBFA_000907 PF14602 Hexapeptide repeat of succinyl-transferase ABBFA_000907 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_000907 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ABBFA_000909 PF03466 LysR substrate binding domain ABBFA_000909 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000910 PF12857 TOBE-like domain ABBFA_000910 PF00005 ABC transporter ABBFA_000911 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_000912 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_000915 PF01063 Amino-transferase class IV ABBFA_000916 PF02618 YceG-like family ABBFA_000917 PF02223 Thymidylate kinase ABBFA_000919 PF00890 FAD binding domain ABBFA_000919 PF02910 Fumarate reductase flavoprotein C-term ABBFA_000920 PF17820 PDZ domain ABBFA_000920 PF13180 PDZ domain ABBFA_000921 PF13180 PDZ domain ABBFA_000923 PF00009 Elongation factor Tu GTP binding domain ABBFA_000923 PF03144 Elongation factor Tu domain 2 ABBFA_000923 PF06421 GTP-binding protein LepA C-terminus ABBFA_000923 PF00679 Elongation factor G C-terminus ABBFA_000924 PF10502 Signal peptidase, peptidase S26 ABBFA_000926 PF00035 Double-stranded RNA binding motif ABBFA_000926 PF14622 Ribonuclease-III-like ABBFA_000927 PF07650 KH domain ABBFA_000927 PF01926 50S ribosome-binding GTPase ABBFA_000929 PF11967 Recombination protein O N terminal ABBFA_000929 PF02565 Recombination protein O C terminal ABBFA_000930 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABBFA_000931 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ABBFA_000932 PF00106 short chain dehydrogenase ABBFA_000940 PF17151 Periplasmic sensor domain ABBFA_000940 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_000942 PF02151 UvrB/uvrC motif ABBFA_000942 PF04851 Type III restriction enzyme, res subunit ABBFA_000942 PF00271 Helicase conserved C-terminal domain ABBFA_000942 PF12344 Ultra-violet resistance protein B ABBFA_000942 PF17757 UvrB interaction domain ABBFA_000944 PF00892 EamA-like transporter family ABBFA_000945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABBFA_000945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABBFA_000948 PF01926 50S ribosome-binding GTPase ABBFA_000948 PF01018 GTP1/OBG ABBFA_000949 PF00696 Amino acid kinase family ABBFA_000949 PF01472 PUA domain ABBFA_000951 PF07759 Protein of unknown function (DUF1615) ABBFA_000952 PF01207 Dihydrouridine synthase (Dus) ABBFA_000953 PF03060 Nitronate monooxygenase ABBFA_000956 PF02350 UDP-N-acetylglucosamine 2-epimerase ABBFA_000961 PF03441 FAD binding domain of DNA photolyase ABBFA_000961 PF00875 DNA photolyase ABBFA_000962 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_000963 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_000964 PF07943 Penicillin-binding protein 5, C-terminal domain ABBFA_000964 PF00768 D-alanyl-D-alanine carboxypeptidase ABBFA_000966 PF03971 Monomeric isocitrate dehydrogenase ABBFA_000967 PF00849 RNA pseudouridylate synthase ABBFA_000968 PF00180 Isocitrate/isopropylmalate dehydrogenase ABBFA_000971 PF06779 Uncharacterised MFS-type transporter YbfB ABBFA_000972 PF03466 LysR substrate binding domain ABBFA_000972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_000974 PF02567 Phenazine biosynthesis-like protein ABBFA_000975 PF00675 Insulinase (Peptidase family M16) ABBFA_000975 PF05193 Peptidase M16 inactive domain ABBFA_000981 PF01867 CRISPR associated protein Cas1 ABBFA_000983 PF09611 CRISPR-associated protein (Cas_Csy1) ABBFA_000984 PF09614 CRISPR-associated protein (Cas_Csy2) ABBFA_000985 PF09615 CRISPR-associated protein (Cas_Csy3) ABBFA_000991 PF02581 Thiamine monophosphate synthase ABBFA_000992 PF00202 Aminotransferase class-III ABBFA_000994 PF00849 RNA pseudouridylate synthase ABBFA_000995 PF00271 Helicase conserved C-terminal domain ABBFA_000995 PF12137 RNA polymerase recycling family C-terminal ABBFA_000995 PF18339 RapA N-terminal Tudor like domain 1 ABBFA_000995 PF18337 RapA N-terminal Tudor like domain ABBFA_000995 PF00176 SNF2 family N-terminal domain ABBFA_000997 PF00440 Bacterial regulatory proteins, tetR family ABBFA_000998 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_000998 PF00970 Oxidoreductase FAD-binding domain ABBFA_000998 PF00175 Oxidoreductase NAD-binding domain ABBFA_000999 PF00487 Fatty acid desaturase ABBFA_001001 PF17754 MftR C-terminal domain ABBFA_001001 PF00440 Bacterial regulatory proteins, tetR family ABBFA_001003 PF00202 Aminotransferase class-III ABBFA_001004 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABBFA_001005 PF00171 Aldehyde dehydrogenase family ABBFA_001006 PF01037 Lrp/AsnC ligand binding domain ABBFA_001007 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABBFA_001007 PF00205 Thiamine pyrophosphate enzyme, central domain ABBFA_001007 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABBFA_001008 PF00324 Amino acid permease ABBFA_001009 PF12849 PBP superfamily domain ABBFA_001010 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001011 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001012 PF00005 ABC transporter ABBFA_001013 PF08496 Peptidase family S49 N-terminal ABBFA_001013 PF01343 Peptidase family S49 ABBFA_001016 PF08328 Adenylosuccinate lyase C-terminal ABBFA_001016 PF00206 Lyase ABBFA_001017 PF04356 Protein of unknown function (DUF489) ABBFA_001019 PF00293 NUDIX domain ABBFA_001019 PF13344 Haloacid dehalogenase-like hydrolase ABBFA_001020 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_001021 PF00768 D-alanyl-D-alanine carboxypeptidase ABBFA_001021 PF07943 Penicillin-binding protein 5, C-terminal domain ABBFA_001024 PF01975 Survival protein SurE ABBFA_001025 PF01551 Peptidase family M23 ABBFA_001025 PF01476 LysM domain ABBFA_001026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001026 PF03466 LysR substrate binding domain ABBFA_001027 PF05362 Lon protease (S16) C-terminal proteolytic domain ABBFA_001027 PF13654 AAA domain ABBFA_001028 PF07690 Major Facilitator Superfamily ABBFA_001029 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_001030 PF13593 SBF-like CPA transporter family (DUF4137) ABBFA_001031 PF01197 Ribosomal protein L31 ABBFA_001032 PF00563 EAL domain ABBFA_001032 PF12792 CSS motif domain associated with EAL ABBFA_001034 PF04055 Radical SAM superfamily ABBFA_001035 PF08207 Elongation factor P (EF-P) KOW-like domain ABBFA_001035 PF09285 Elongation factor P, C-terminal ABBFA_001035 PF01132 Elongation factor P (EF-P) OB domain ABBFA_001036 PF02554 Carbon starvation protein CstA ABBFA_001036 PF13722 5TM C-terminal transporter carbon starvation CstA ABBFA_001037 PF04328 Selenoprotein, putative ABBFA_001047 PF02678 Pirin ABBFA_001047 PF17954 Quercetinase C-terminal cupin domain ABBFA_001048 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_001049 PF08348 YheO-like PAS domain ABBFA_001049 PF13309 HTH domain ABBFA_001051 PF00550 Phosphopantetheine attachment site ABBFA_001051 PF00668 Condensation domain ABBFA_001051 PF13193 AMP-binding enzyme C-terminal domain ABBFA_001051 PF00501 AMP-binding enzyme ABBFA_001052 PF00501 AMP-binding enzyme ABBFA_001052 PF00975 Thioesterase domain ABBFA_001052 PF00550 Phosphopantetheine attachment site ABBFA_001052 PF00668 Condensation domain ABBFA_001052 PF13193 AMP-binding enzyme C-terminal domain ABBFA_001055 PF01032 FecCD transport family ABBFA_001056 PF01032 FecCD transport family ABBFA_001057 PF00005 ABC transporter ABBFA_001058 PF01497 Periplasmic binding protein ABBFA_001059 PF00593 TonB dependent receptor ABBFA_001059 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001060 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABBFA_001061 PF00550 Phosphopantetheine attachment site ABBFA_001061 PF00501 AMP-binding enzyme ABBFA_001061 PF00668 Condensation domain ABBFA_001062 PF00501 AMP-binding enzyme ABBFA_001062 PF13193 AMP-binding enzyme C-terminal domain ABBFA_001063 PF00550 Phosphopantetheine attachment site ABBFA_001063 PF00857 Isochorismatase family ABBFA_001064 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABBFA_001066 PF00005 ABC transporter ABBFA_001066 PF00664 ABC transporter transmembrane region ABBFA_001067 PF00664 ABC transporter transmembrane region ABBFA_001067 PF00005 ABC transporter ABBFA_001068 PF00975 Thioesterase domain ABBFA_001070 PF00425 chorismate binding enzyme ABBFA_001072 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABBFA_001073 PF05675 Protein of unknown function (DUF817) ABBFA_001076 PF00144 Beta-lactamase ABBFA_001078 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_001078 PF01799 [2Fe-2S] binding domain ABBFA_001079 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABBFA_001079 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABBFA_001082 PF00218 Indole-3-glycerol phosphate synthase ABBFA_001083 PF00218 Indole-3-glycerol phosphate synthase ABBFA_001084 PF00591 Glycosyl transferase family, a/b domain ABBFA_001084 PF02885 Glycosyl transferase family, helical bundle domain ABBFA_001085 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001085 PF00593 TonB dependent receptor ABBFA_001086 PF01433 Peptidase family M1 domain ABBFA_001086 PF11838 ERAP1-like C-terminal domain ABBFA_001087 PF00117 Glutamine amidotransferase class-I ABBFA_001089 PF00854 POT family ABBFA_001091 PF04345 Chorismate lyase ABBFA_001092 PF01040 UbiA prenyltransferase family ABBFA_001099 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABBFA_001099 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABBFA_001100 PF01784 NIF3 (NGG1p interacting factor 3) ABBFA_001101 PF13180 PDZ domain ABBFA_001102 PF12627 Probable RNA and SrmB- binding site of polymerase A ABBFA_001102 PF01743 Poly A polymerase head domain ABBFA_001103 PF01515 Phosphate acetyl/butaryl transferase ABBFA_001103 PF03949 Malic enzyme, NAD binding domain ABBFA_001103 PF00390 Malic enzyme, N-terminal domain ABBFA_001104 PF03707 Bacterial signalling protein N terminal repeat ABBFA_001104 PF00563 EAL domain ABBFA_001104 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_001105 PF04452 RNA methyltransferase ABBFA_001106 PF02219 Methylenetetrahydrofolate reductase ABBFA_001107 PF05221 S-adenosyl-L-homocysteine hydrolase ABBFA_001107 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABBFA_001110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001110 PF09317 Domain of unknown function (DUF1974) ABBFA_001111 PF04055 Radical SAM superfamily ABBFA_001112 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_001112 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001115 PF07690 Major Facilitator Superfamily ABBFA_001117 PF00557 Metallopeptidase family M24 ABBFA_001118 PF00318 Ribosomal protein S2 ABBFA_001119 PF00889 Elongation factor TS ABBFA_001121 PF12833 Helix-turn-helix domain ABBFA_001124 PF03330 Lytic transglycolase ABBFA_001124 PF05036 Sporulation related domain ABBFA_001125 PF13406 Transglycosylase SLT domain ABBFA_001126 PF01098 Cell cycle protein ABBFA_001128 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ABBFA_001128 PF14489 QueF-like protein ABBFA_001129 PF01061 ABC-2 type transporter ABBFA_001130 PF00005 ABC transporter ABBFA_001136 PF00464 Serine hydroxymethyltransferase ABBFA_001137 PF02321 Outer membrane efflux protein ABBFA_001138 PF00873 AcrB/AcrD/AcrF family ABBFA_001139 PF13533 Biotin-lipoyl like ABBFA_001140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001140 PF03466 LysR substrate binding domain ABBFA_001141 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_001142 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001143 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001144 PF00005 ABC transporter ABBFA_001145 PF00893 Small Multidrug Resistance protein ABBFA_001146 PF00037 4Fe-4S binding domain ABBFA_001148 PF00392 Bacterial regulatory proteins, gntR family ABBFA_001148 PF00155 Aminotransferase class I and II ABBFA_001149 PF02567 Phenazine biosynthesis-like protein ABBFA_001150 PF00175 Oxidoreductase NAD-binding domain ABBFA_001150 PF00970 Oxidoreductase FAD-binding domain ABBFA_001151 PF01980 tRNA-methyltransferase O ABBFA_001151 PF18389 TrmO C-terminal domain ABBFA_001153 PF00437 Type II/IV secretion system protein ABBFA_001155 PF00072 Response regulator receiver domain ABBFA_001155 PF00486 Transcriptional regulatory protein, C terminal ABBFA_001156 PF08521 Two-component sensor kinase N-terminal ABBFA_001156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_001156 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_001158 PF00293 NUDIX domain ABBFA_001160 PF00912 Transglycosylase ABBFA_001160 PF14814 Bifunctional transglycosylase second domain ABBFA_001160 PF00905 Penicillin binding protein transpeptidase domain ABBFA_001161 PF01513 ATP-NAD kinase ABBFA_001162 PF07023 Protein of unknown function (DUF1315) ABBFA_001163 PF02885 Glycosyl transferase family, helical bundle domain ABBFA_001163 PF00591 Glycosyl transferase family, a/b domain ABBFA_001164 PF00375 Sodium:dicarboxylate symporter family ABBFA_001165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001165 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_001165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001166 PF00756 Putative esterase ABBFA_001167 PF01842 ACT domain ABBFA_001167 PF00800 Prephenate dehydratase ABBFA_001167 PF01817 Chorismate mutase type II ABBFA_001168 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABBFA_001170 PF07687 Peptidase dimerisation domain ABBFA_001170 PF01546 Peptidase family M20/M25/M40 ABBFA_001171 PF00753 Metallo-beta-lactamase superfamily ABBFA_001173 PF03883 Peroxide stress protein YaaA ABBFA_001174 PF05690 Thiazole biosynthesis protein ThiG ABBFA_001176 PF04241 Protein of unknown function (DUF423) ABBFA_001177 PF00140 Sigma-70 factor, region 1.2 ABBFA_001177 PF04542 Sigma-70 region 2 ABBFA_001177 PF04545 Sigma-70, region 4 ABBFA_001179 PF00313 'Cold-shock' DNA-binding domain ABBFA_001180 PF00270 DEAD/DEAH box helicase ABBFA_001180 PF00271 Helicase conserved C-terminal domain ABBFA_001182 PF00881 Nitroreductase family ABBFA_001183 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABBFA_001183 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABBFA_001187 PF01180 Dihydroorotate dehydrogenase ABBFA_001189 PF00156 Phosphoribosyl transferase domain ABBFA_001192 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABBFA_001192 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABBFA_001193 PF01435 Peptidase family M48 ABBFA_001194 PF09424 Yqey-like protein ABBFA_001195 PF01165 Ribosomal protein S21 ABBFA_001196 PF00814 Glycoprotease family ABBFA_001200 PF00069 Protein kinase domain ABBFA_001205 PF03466 LysR substrate binding domain ABBFA_001205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001206 PF00202 Aminotransferase class-III ABBFA_001207 PF00202 Aminotransferase class-III ABBFA_001208 PF00171 Aldehyde dehydrogenase family ABBFA_001209 PF00324 Amino acid permease ABBFA_001221 PF00561 alpha/beta hydrolase fold ABBFA_001222 PF03616 Sodium/glutamate symporter ABBFA_001224 PF03466 LysR substrate binding domain ABBFA_001224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001225 PF00248 Aldo/keto reductase family ABBFA_001226 PF00106 short chain dehydrogenase ABBFA_001229 PF07729 FCD domain ABBFA_001229 PF00392 Bacterial regulatory proteins, gntR family ABBFA_001241 PF00083 Sugar (and other) transporter ABBFA_001241 PF08946 Osmosensory transporter coiled coil ABBFA_001245 PF04403 Paraquat-inducible protein A ABBFA_001246 PF02470 MlaD protein ABBFA_001248 PF00576 HIUase/Transthyretin family ABBFA_001250 PF00072 Response regulator receiver domain ABBFA_001250 PF00486 Transcriptional regulatory protein, C terminal ABBFA_001251 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_001251 PF00672 HAMP domain ABBFA_001251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_001259 PF08521 Two-component sensor kinase N-terminal ABBFA_001259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_001259 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_001260 PF00486 Transcriptional regulatory protein, C terminal ABBFA_001260 PF00072 Response regulator receiver domain ABBFA_001264 PF01177 Asp/Glu/Hydantoin racemase ABBFA_001265 PF00892 EamA-like transporter family ABBFA_001266 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_001270 PF00375 Sodium:dicarboxylate symporter family ABBFA_001272 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABBFA_001272 PF00753 Metallo-beta-lactamase superfamily ABBFA_001273 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001274 PF09383 NIL domain ABBFA_001274 PF00005 ABC transporter ABBFA_001275 PF03180 NLPA lipoprotein ABBFA_001276 PF02843 Phosphoribosylglycinamide synthetase, C domain ABBFA_001276 PF02844 Phosphoribosylglycinamide synthetase, N domain ABBFA_001276 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABBFA_001277 PF01808 AICARFT/IMPCHase bienzyme ABBFA_001277 PF02142 MGS-like domain ABBFA_001278 PF02954 Bacterial regulatory protein, Fis family ABBFA_001282 PF13932 GidA associated domain ABBFA_001282 PF01134 Glucose inhibited division protein A ABBFA_001285 PF14403 Circularly permuted ATP-grasp type 2 ABBFA_001287 PF01841 Transglutaminase-like superfamily ABBFA_001287 PF08379 Bacterial transglutaminase-like N-terminal region ABBFA_001289 PF00842 Alanine racemase, C-terminal domain ABBFA_001289 PF01168 Alanine racemase, N-terminal domain ABBFA_001290 PF03796 DnaB-like helicase C terminal domain ABBFA_001290 PF00772 DnaB-like helicase N terminal domain ABBFA_001291 PF03948 Ribosomal protein L9, C-terminal domain ABBFA_001291 PF01281 Ribosomal protein L9, N-terminal domain ABBFA_001292 PF01084 Ribosomal protein S18 ABBFA_001293 PF01250 Ribosomal protein S6 ABBFA_001294 PF01040 UbiA prenyltransferase family ABBFA_001295 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABBFA_001296 PF00510 Cytochrome c oxidase subunit III ABBFA_001297 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABBFA_001298 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABBFA_001298 PF06481 COX Aromatic Rich Motif ABBFA_001300 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABBFA_001300 PF02896 PEP-utilising enzyme, TIM barrel domain ABBFA_001300 PF00391 PEP-utilising enzyme, mobile domain ABBFA_001301 PF03618 Kinase/pyrophosphorylase ABBFA_001303 PF01522 Polysaccharide deacetylase ABBFA_001303 PF14883 Hypothetical glycosyl hydrolase family 13 ABBFA_001304 PF00535 Glycosyl transferase family 2 ABBFA_001305 PF13994 PgaD-like protein ABBFA_001307 PF00296 Luciferase-like monooxygenase ABBFA_001310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001310 PF03466 LysR substrate binding domain ABBFA_001312 PF00472 RF-1 domain ABBFA_001312 PF03462 PCRF domain ABBFA_001313 PF17827 PrmC N-terminal domain ABBFA_001313 PF13847 Methyltransferase domain ABBFA_001314 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001315 PF09084 NMT1/THI5 like ABBFA_001316 PF12833 Helix-turn-helix domain ABBFA_001317 PF00106 short chain dehydrogenase ABBFA_001318 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001318 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001318 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_001319 PF00501 AMP-binding enzyme ABBFA_001319 PF13193 AMP-binding enzyme C-terminal domain ABBFA_001320 PF01613 Flavin reductase like domain ABBFA_001321 PF00899 ThiF family ABBFA_001322 PF03109 ABC1 family ABBFA_001325 PF03814 Potassium-transporting ATPase A subunit ABBFA_001327 PF02669 K+-transporting ATPase, c chain ABBFA_001328 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_001328 PF02702 Osmosensitive K+ channel His kinase sensor domain ABBFA_001328 PF13493 Domain of unknown function (DUF4118) ABBFA_001328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_001329 PF00486 Transcriptional regulatory protein, C terminal ABBFA_001329 PF00072 Response regulator receiver domain ABBFA_001330 PF00120 Glutamine synthetase, catalytic domain ABBFA_001332 PF03232 Ubiquinone biosynthesis protein COQ7 ABBFA_001333 PF07690 Major Facilitator Superfamily ABBFA_001334 PF01103 Surface antigen ABBFA_001334 PF07244 Surface antigen variable number repeat ABBFA_001334 PF17243 POTRA domain TamA domain 1 ABBFA_001337 PF00330 Aconitase family (aconitate hydratase) ABBFA_001337 PF06434 Aconitate hydratase 2 N-terminus ABBFA_001337 PF11791 Aconitate B N-terminal domain ABBFA_001339 PF00520 Ion transport protein ABBFA_001339 PF00027 Cyclic nucleotide-binding domain ABBFA_001340 PF07690 Major Facilitator Superfamily ABBFA_001343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001343 PF03466 LysR substrate binding domain ABBFA_001344 PF04284 Protein of unknown function (DUF441) ABBFA_001346 PF00849 RNA pseudouridylate synthase ABBFA_001346 PF01479 S4 domain ABBFA_001349 PF00849 RNA pseudouridylate synthase ABBFA_001349 PF01479 S4 domain ABBFA_001350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABBFA_001351 PF08676 MutL C terminal dimerisation domain ABBFA_001351 PF01119 DNA mismatch repair protein, C-terminal domain ABBFA_001353 PF17209 Hfq protein ABBFA_001355 PF00881 Nitroreductase family ABBFA_001357 PF00149 Calcineurin-like phosphoesterase ABBFA_001358 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABBFA_001359 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABBFA_001359 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ABBFA_001361 PF00117 Glutamine amidotransferase class-I ABBFA_001361 PF00958 GMP synthase C terminal domain ABBFA_001361 PF02540 NAD synthase ABBFA_001362 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ABBFA_001363 PF06751 Ethanolamine ammonia lyase large subunit (EutB) ABBFA_001364 PF13520 Amino acid permease ABBFA_001365 PF00171 Aldehyde dehydrogenase family ABBFA_001368 PF00465 Iron-containing alcohol dehydrogenase ABBFA_001369 PF05970 PIF1-like helicase ABBFA_001369 PF14493 Helix-turn-helix domain ABBFA_001371 PF02110 Hydroxyethylthiazole kinase family ABBFA_001374 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ABBFA_001374 PF01433 Peptidase family M1 domain ABBFA_001374 PF11940 Domain of unknown function (DUF3458) Ig-like fold ABBFA_001377 PF13953 PapC C-terminal domain ABBFA_001377 PF00577 Outer membrane usher protein ABBFA_001377 PF13954 PapC N-terminal domain ABBFA_001382 PF01817 Chorismate mutase type II ABBFA_001383 PF01037 Lrp/AsnC ligand binding domain ABBFA_001385 PF02224 Cytidylate kinase ABBFA_001388 PF00440 Bacterial regulatory proteins, tetR family ABBFA_001390 PF00593 TonB dependent receptor ABBFA_001390 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001391 PF00924 Mechanosensitive ion channel ABBFA_001397 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001397 PF00593 TonB dependent receptor ABBFA_001402 PF12848 ABC transporter ABBFA_001402 PF00005 ABC transporter ABBFA_001403 PF00582 Universal stress protein family ABBFA_001407 PF00689 Cation transporting ATPase, C-terminus ABBFA_001407 PF00690 Cation transporter/ATPase, N-terminus ABBFA_001408 PF02308 MgtC family ABBFA_001409 PF03594 Benzoate membrane transport protein ABBFA_001410 PF01037 Lrp/AsnC ligand binding domain ABBFA_001411 PF01810 LysE type translocator ABBFA_001413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001413 PF03466 LysR substrate binding domain ABBFA_001414 PF00108 Thiolase, N-terminal domain ABBFA_001414 PF02803 Thiolase, C-terminal domain ABBFA_001419 PF07690 Major Facilitator Superfamily ABBFA_001420 PF12170 DNA polymerase III tau subunit V interacting with alpha ABBFA_001420 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ABBFA_001420 PF12169 DNA polymerase III subunits gamma and tau domain III ABBFA_001421 PF05506 Domain of unknown function (DUF756) ABBFA_001421 PF04185 Phosphoesterase family ABBFA_001422 PF03061 Thioesterase superfamily ABBFA_001423 PF00465 Iron-containing alcohol dehydrogenase ABBFA_001425 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABBFA_001426 PF01565 FAD binding domain ABBFA_001426 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABBFA_001429 PF01645 Conserved region in glutamate synthase ABBFA_001434 PF12832 MFS_1 like family ABBFA_001436 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_001436 PF00289 Biotin carboxylase, N-terminal domain ABBFA_001436 PF02785 Biotin carboxylase C-terminal domain ABBFA_001437 PF00364 Biotin-requiring enzyme ABBFA_001438 PF01220 Dehydroquinase class II ABBFA_001439 PF13438 Domain of unknown function (DUF4113) ABBFA_001439 PF00817 impB/mucB/samB family ABBFA_001439 PF11799 impB/mucB/samB family C-terminal domain ABBFA_001440 PF00005 ABC transporter ABBFA_001441 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABBFA_001441 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABBFA_001441 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABBFA_001441 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_001441 PF13806 Rieske-like [2Fe-2S] domain ABBFA_001441 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001442 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABBFA_001442 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABBFA_001442 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001442 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABBFA_001442 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_001443 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_001443 PF01568 Molydopterin dinucleotide binding domain ABBFA_001443 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_001443 PF00384 Molybdopterin oxidoreductase ABBFA_001444 PF12804 MobA-like NTP transferase domain ABBFA_001445 PF01568 Molydopterin dinucleotide binding domain ABBFA_001445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_001445 PF00384 Molybdopterin oxidoreductase ABBFA_001446 PF04055 Radical SAM superfamily ABBFA_001446 PF06463 Molybdenum Cofactor Synthesis C ABBFA_001447 PF02391 MoaE protein ABBFA_001448 PF00994 Probable molybdopterin binding domain ABBFA_001448 PF01967 MoaC family ABBFA_001449 PF03453 MoeA N-terminal region (domain I and II) ABBFA_001449 PF03454 MoeA C-terminal region (domain IV) ABBFA_001449 PF00994 Probable molybdopterin binding domain ABBFA_001450 PF01638 HxlR-like helix-turn-helix ABBFA_001451 PF00392 Bacterial regulatory proteins, gntR family ABBFA_001451 PF00155 Aminotransferase class I and II ABBFA_001452 PF00892 EamA-like transporter family ABBFA_001456 PF02635 DsrE/DsrF-like family ABBFA_001457 PF16363 GDP-mannose 4,6 dehydratase ABBFA_001458 PF10415 Fumarase C C-terminus ABBFA_001458 PF00206 Lyase ABBFA_001462 PF01266 FAD dependent oxidoreductase ABBFA_001464 PF02542 YgbB family ABBFA_001466 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABBFA_001466 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABBFA_001467 PF00440 Bacterial regulatory proteins, tetR family ABBFA_001468 PF02954 Bacterial regulatory protein, Fis family ABBFA_001468 PF00158 Sigma-54 interaction domain ABBFA_001468 PF00072 Response regulator receiver domain ABBFA_001469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_001469 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_001469 PF00989 PAS fold ABBFA_001471 PF04055 Radical SAM superfamily ABBFA_001471 PF00919 Uncharacterized protein family UPF0004 ABBFA_001471 PF18693 TRAM domain ABBFA_001472 PF00696 Amino acid kinase family ABBFA_001473 PF01765 Ribosome recycling factor ABBFA_001474 PF01255 Putative undecaprenyl diphosphate synthase ABBFA_001475 PF13288 DXP reductoisomerase C-terminal domain ABBFA_001475 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABBFA_001475 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABBFA_001476 PF13180 PDZ domain ABBFA_001476 PF02163 Peptidase family M50 ABBFA_001476 PF17820 PDZ domain ABBFA_001477 PF07244 Surface antigen variable number repeat ABBFA_001477 PF01103 Surface antigen ABBFA_001479 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABBFA_001479 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_001480 PF07977 FabA-like domain ABBFA_001481 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABBFA_001481 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_001483 PF02631 RecX family ABBFA_001484 PF00154 recA bacterial DNA recombination protein ABBFA_001485 PF01479 S4 domain ABBFA_001486 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_001491 PF01037 Lrp/AsnC ligand binding domain ABBFA_001492 PF00266 Aminotransferase class-V ABBFA_001493 PF00324 Amino acid permease ABBFA_001495 PF05922 Peptidase inhibitor I9 ABBFA_001495 PF00082 Subtilase family ABBFA_001496 PF01740 STAS domain ABBFA_001496 PF00916 Sulfate permease family ABBFA_001497 PF02586 SOS response associated peptidase (SRAP) ABBFA_001498 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_001500 PF03707 Bacterial signalling protein N terminal repeat ABBFA_001500 PF00563 EAL domain ABBFA_001500 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_001504 PF02378 Phosphotransferase system, EIIC ABBFA_001504 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABBFA_001505 PF00294 pfkB family carbohydrate kinase ABBFA_001506 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABBFA_001506 PF02896 PEP-utilising enzyme, TIM barrel domain ABBFA_001506 PF00391 PEP-utilising enzyme, mobile domain ABBFA_001506 PF00381 PTS HPr component phosphorylation site ABBFA_001506 PF05524 PEP-utilising enzyme, N-terminal ABBFA_001510 PF05525 Branched-chain amino acid transport protein ABBFA_001511 PF00557 Metallopeptidase family M24 ABBFA_001512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001512 PF03466 LysR substrate binding domain ABBFA_001514 PF00462 Glutaredoxin ABBFA_001515 PF00202 Aminotransferase class-III ABBFA_001516 PF00571 CBS domain ABBFA_001516 PF00478 IMP dehydrogenase / GMP reductase domain ABBFA_001522 PF00448 SRP54-type protein, GTPase domain ABBFA_001522 PF02881 SRP54-type protein, helical bundle domain ABBFA_001524 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ABBFA_001526 PF02322 Cytochrome bd terminal oxidase subunit II ABBFA_001527 PF01654 Cytochrome bd terminal oxidase subunit I ABBFA_001528 PF07290 Protein of unknown function (DUF1449) ABBFA_001530 PF00294 pfkB family carbohydrate kinase ABBFA_001531 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001531 PF00593 TonB dependent receptor ABBFA_001532 PF05193 Peptidase M16 inactive domain ABBFA_001532 PF08367 Peptidase M16C associated ABBFA_001532 PF00675 Insulinase (Peptidase family M16) ABBFA_001533 PF02253 Phospholipase A1 ABBFA_001534 PF02386 Cation transport protein ABBFA_001535 PF02080 TrkA-C domain ABBFA_001535 PF02254 TrkA-N domain ABBFA_001536 PF00585 C-terminal regulatory domain of Threonine dehydratase ABBFA_001536 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_001537 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ABBFA_001541 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABBFA_001541 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABBFA_001543 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABBFA_001544 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_001544 PF02861 Clp amino terminal domain, pathogenicity island component ABBFA_001544 PF17871 AAA lid domain ABBFA_001544 PF07724 AAA domain (Cdc48 subfamily) ABBFA_001544 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_001545 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ABBFA_001546 PF00793 DAHP synthetase I family ABBFA_001549 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001549 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_001555 PF00117 Glutamine amidotransferase class-I ABBFA_001555 PF06418 CTP synthase N-terminus ABBFA_001556 PF00793 DAHP synthetase I family ABBFA_001557 PF03952 Enolase, N-terminal domain ABBFA_001557 PF00113 Enolase, C-terminal TIM barrel domain ABBFA_001558 PF04239 Protein of unknown function (DUF421) ABBFA_001559 PF04977 Septum formation initiator ABBFA_001560 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABBFA_001561 PF01144 Coenzyme A transferase ABBFA_001562 PF01144 Coenzyme A transferase ABBFA_001563 PF00108 Thiolase, N-terminal domain ABBFA_001563 PF02803 Thiolase, C-terminal domain ABBFA_001564 PF10397 Adenylosuccinate lyase C-terminus ABBFA_001564 PF00206 Lyase ABBFA_001565 PF00561 alpha/beta hydrolase fold ABBFA_001566 PF07690 Major Facilitator Superfamily ABBFA_001567 PF02627 Carboxymuconolactone decarboxylase family ABBFA_001568 PF00775 Dioxygenase ABBFA_001568 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ABBFA_001569 PF00775 Dioxygenase ABBFA_001570 PF01487 Type I 3-dehydroquinase ABBFA_001571 PF05048 Periplasmic copper-binding protein (NosD) ABBFA_001572 PF04966 Carbohydrate-selective porin, OprB family ABBFA_001573 PF13360 PQQ-like domain ABBFA_001573 PF01011 PQQ enzyme repeat ABBFA_001575 PF04143 Sulphur transport ABBFA_001577 PF00753 Metallo-beta-lactamase superfamily ABBFA_001578 PF01614 Bacterial transcriptional regulator ABBFA_001578 PF09339 IclR helix-turn-helix domain ABBFA_001579 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001579 PF03466 LysR substrate binding domain ABBFA_001580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001580 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_001580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001583 PF00106 short chain dehydrogenase ABBFA_001585 PF07690 Major Facilitator Superfamily ABBFA_001588 PF01425 Amidase ABBFA_001589 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001592 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_001592 PF00355 Rieske [2Fe-2S] domain ABBFA_001595 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_001595 PF00175 Oxidoreductase NAD-binding domain ABBFA_001596 PF01613 Flavin reductase like domain ABBFA_001597 PF12833 Helix-turn-helix domain ABBFA_001597 PF02311 AraC-like ligand binding domain ABBFA_001598 PF01179 Copper amine oxidase, enzyme domain ABBFA_001598 PF07833 Copper amine oxidase N-terminal domain ABBFA_001598 PF02727 Copper amine oxidase, N2 domain ABBFA_001598 PF02728 Copper amine oxidase, N3 domain ABBFA_001600 PF00171 Aldehyde dehydrogenase family ABBFA_001601 PF01804 Penicillin amidase ABBFA_001602 PF12146 Serine aminopeptidase, S33 ABBFA_001603 PF00108 Thiolase, N-terminal domain ABBFA_001603 PF02803 Thiolase, C-terminal domain ABBFA_001604 PF01144 Coenzyme A transferase ABBFA_001605 PF01144 Coenzyme A transferase ABBFA_001606 PF01144 Coenzyme A transferase ABBFA_001607 PF01144 Coenzyme A transferase ABBFA_001608 PF00775 Dioxygenase ABBFA_001608 PF04444 Catechol dioxygenase N terminus ABBFA_001609 PF02426 Muconolactone delta-isomerase ABBFA_001610 PF13378 Enolase C-terminal domain-like ABBFA_001610 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABBFA_001611 PF03466 LysR substrate binding domain ABBFA_001611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001613 PF07729 FCD domain ABBFA_001613 PF00392 Bacterial regulatory proteins, gntR family ABBFA_001614 PF07729 FCD domain ABBFA_001614 PF00392 Bacterial regulatory proteins, gntR family ABBFA_001615 PF00920 Dehydratase family ABBFA_001616 PF07690 Major Facilitator Superfamily ABBFA_001618 PF00171 Aldehyde dehydrogenase family ABBFA_001620 PF00561 alpha/beta hydrolase fold ABBFA_001621 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_001621 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001622 PF00106 short chain dehydrogenase ABBFA_001624 PF00376 MerR family regulatory protein ABBFA_001624 PF09278 MerR, DNA binding ABBFA_001626 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001628 PF12706 Beta-lactamase superfamily domain ABBFA_001629 PF08359 YsiA-like protein, C-terminal region ABBFA_001629 PF00440 Bacterial regulatory proteins, tetR family ABBFA_001630 PF12833 Helix-turn-helix domain ABBFA_001630 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_001632 PF06314 Acetoacetate decarboxylase (ADC) ABBFA_001634 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_001635 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_001638 PF00857 Isochorismatase family ABBFA_001639 PF03466 LysR substrate binding domain ABBFA_001639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001640 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_001641 PF02254 TrkA-N domain ABBFA_001641 PF00999 Sodium/hydrogen exchanger family ABBFA_001643 PF01546 Peptidase family M20/M25/M40 ABBFA_001643 PF07687 Peptidase dimerisation domain ABBFA_001652 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) ABBFA_001653 PF07690 Major Facilitator Superfamily ABBFA_001654 PF04909 Amidohydrolase ABBFA_001657 PF08450 SMP-30/Gluconolactonase/LRE-like region ABBFA_001659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001659 PF03466 LysR substrate binding domain ABBFA_001662 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_001662 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_001665 PF00171 Aldehyde dehydrogenase family ABBFA_001666 PF00920 Dehydratase family ABBFA_001668 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001668 PF03466 LysR substrate binding domain ABBFA_001669 PF01370 NAD dependent epimerase/dehydratase family ABBFA_001670 PF07690 Major Facilitator Superfamily ABBFA_001671 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABBFA_001671 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABBFA_001672 PF06719 AraC-type transcriptional regulator N-terminus ABBFA_001672 PF12833 Helix-turn-helix domain ABBFA_001674 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABBFA_001674 PF14572 Phosphoribosyl synthetase-associated domain ABBFA_001675 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABBFA_001679 PF03472 Autoinducer binding domain ABBFA_001679 PF00196 Bacterial regulatory proteins, luxR family ABBFA_001680 PF01425 Amidase ABBFA_001681 PF13533 Biotin-lipoyl like ABBFA_001682 PF07690 Major Facilitator Superfamily ABBFA_001687 PF01975 Survival protein SurE ABBFA_001690 PF13291 ACT domain ABBFA_001690 PF04607 Region found in RelA / SpoT proteins ABBFA_001690 PF02824 TGS domain ABBFA_001691 PF02151 UvrB/uvrC motif ABBFA_001691 PF12344 Ultra-violet resistance protein B ABBFA_001691 PF17757 UvrB interaction domain ABBFA_001691 PF00271 Helicase conserved C-terminal domain ABBFA_001691 PF04851 Type III restriction enzyme, res subunit ABBFA_001697 PF13673 Acetyltransferase (GNAT) domain ABBFA_001698 PF12146 Serine aminopeptidase, S33 ABBFA_001699 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001699 PF03466 LysR substrate binding domain ABBFA_001702 PF12146 Serine aminopeptidase, S33 ABBFA_001703 PF02311 AraC-like ligand binding domain ABBFA_001703 PF12833 Helix-turn-helix domain ABBFA_001705 PF16527 Two-component sensor protein CpxA, periplasmic domain ABBFA_001705 PF00672 HAMP domain ABBFA_001705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_001705 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_001706 PF00486 Transcriptional regulatory protein, C terminal ABBFA_001706 PF00072 Response regulator receiver domain ABBFA_001707 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_001707 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_001708 PF00873 AcrB/AcrD/AcrF family ABBFA_001709 PF02321 Outer membrane efflux protein ABBFA_001710 PF12146 Serine aminopeptidase, S33 ABBFA_001711 PF00743 Flavin-binding monooxygenase-like ABBFA_001713 PF01266 FAD dependent oxidoreductase ABBFA_001716 PF16970 Type-1 fimbrial protein, A ABBFA_001717 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABBFA_001717 PF02753 Pili assembly chaperone PapD, C-terminal domain ABBFA_001718 PF13953 PapC C-terminal domain ABBFA_001718 PF13954 PapC N-terminal domain ABBFA_001718 PF00577 Outer membrane usher protein ABBFA_001721 PF00107 Zinc-binding dehydrogenase ABBFA_001721 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_001723 PF00199 Catalase ABBFA_001726 PF13091 PLD-like domain ABBFA_001730 PF01244 Membrane dipeptidase (Peptidase family M19) ABBFA_001731 PF04055 Radical SAM superfamily ABBFA_001731 PF13186 Iron-sulfur cluster-binding domain ABBFA_001732 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ABBFA_001733 PF03070 TENA/THI-4/PQQC family ABBFA_001734 PF12706 Beta-lactamase superfamily domain ABBFA_001735 PF12706 Beta-lactamase superfamily domain ABBFA_001736 PF17941 Polyphosphate kinase C-terminal domain 1 ABBFA_001736 PF02503 Polyphosphate kinase middle domain ABBFA_001736 PF13089 Polyphosphate kinase N-terminal domain ABBFA_001736 PF13090 Polyphosphate kinase C-terminal domain 2 ABBFA_001737 PF13090 Polyphosphate kinase C-terminal domain 2 ABBFA_001737 PF17941 Polyphosphate kinase C-terminal domain 1 ABBFA_001737 PF13089 Polyphosphate kinase N-terminal domain ABBFA_001737 PF02503 Polyphosphate kinase middle domain ABBFA_001738 PF00149 Calcineurin-like phosphoesterase ABBFA_001740 PF00550 Phosphopantetheine attachment site ABBFA_001740 PF00857 Isochorismatase family ABBFA_001741 PF00106 short chain dehydrogenase ABBFA_001742 PF03459 TOBE domain ABBFA_001742 PF00005 ABC transporter ABBFA_001743 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001745 PF03459 TOBE domain ABBFA_001745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001746 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_001746 PF00355 Rieske [2Fe-2S] domain ABBFA_001747 PF00866 Ring hydroxylating beta subunit ABBFA_001748 PF00175 Oxidoreductase NAD-binding domain ABBFA_001748 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_001748 PF00970 Oxidoreductase FAD-binding domain ABBFA_001749 PF12833 Helix-turn-helix domain ABBFA_001749 PF14525 AraC-binding-like domain ABBFA_001751 PF01613 Flavin reductase like domain ABBFA_001754 PF01738 Dienelactone hydrolase family ABBFA_001755 PF07690 Major Facilitator Superfamily ABBFA_001756 PF06719 AraC-type transcriptional regulator N-terminus ABBFA_001756 PF12833 Helix-turn-helix domain ABBFA_001760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001760 PF03466 LysR substrate binding domain ABBFA_001761 PF01144 Coenzyme A transferase ABBFA_001762 PF01144 Coenzyme A transferase ABBFA_001763 PF02667 Short chain fatty acid transporter ABBFA_001764 PF02803 Thiolase, C-terminal domain ABBFA_001764 PF00108 Thiolase, N-terminal domain ABBFA_001765 PF03466 LysR substrate binding domain ABBFA_001765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001766 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001766 PF03466 LysR substrate binding domain ABBFA_001769 PF10415 Fumarase C C-terminus ABBFA_001769 PF00206 Lyase ABBFA_001770 PF00593 TonB dependent receptor ABBFA_001770 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001771 PF00083 Sugar (and other) transporter ABBFA_001774 PF00005 ABC transporter ABBFA_001775 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001776 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABBFA_001781 PF02525 Flavodoxin-like fold ABBFA_001782 PF01638 HxlR-like helix-turn-helix ABBFA_001783 PF06445 GyrI-like small molecule binding domain ABBFA_001783 PF12833 Helix-turn-helix domain ABBFA_001786 PF01925 Sulfite exporter TauE/SafE ABBFA_001787 PF04273 Putative phosphatase (DUF442) ABBFA_001787 PF00753 Metallo-beta-lactamase superfamily ABBFA_001788 PF00753 Metallo-beta-lactamase superfamily ABBFA_001788 PF04273 Putative phosphatase (DUF442) ABBFA_001789 PF00072 Response regulator receiver domain ABBFA_001789 PF02954 Bacterial regulatory protein, Fis family ABBFA_001789 PF00158 Sigma-54 interaction domain ABBFA_001790 PF01062 Bestrophin, RFP-TM, chloride channel ABBFA_001791 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_001791 PF00107 Zinc-binding dehydrogenase ABBFA_001792 PF00106 short chain dehydrogenase ABBFA_001793 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_001793 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_001794 PF00364 Biotin-requiring enzyme ABBFA_001794 PF02817 e3 binding domain ABBFA_001794 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABBFA_001795 PF02779 Transketolase, pyrimidine binding domain ABBFA_001795 PF02780 Transketolase, C-terminal domain ABBFA_001796 PF00676 Dehydrogenase E1 component ABBFA_001797 PF04055 Radical SAM superfamily ABBFA_001800 PF08448 PAS fold ABBFA_001800 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_001801 PF01264 Chorismate synthase ABBFA_001802 PF05175 Methyltransferase small domain ABBFA_001803 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_001805 PF01434 Peptidase family M41 ABBFA_001805 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_001805 PF17862 AAA+ lid domain ABBFA_001807 PF05166 YcgL domain ABBFA_001811 PF00570 HRDC domain ABBFA_001811 PF01612 3'-5' exonuclease ABBFA_001812 PF13662 Toprim domain ABBFA_001812 PF02132 RecR protein ABBFA_001813 PF02575 YbaB/EbfC DNA-binding family ABBFA_001815 PF01053 Cys/Met metabolism PLP-dependent enzyme ABBFA_001816 PF00561 alpha/beta hydrolase fold ABBFA_001817 PF08241 Methyltransferase domain ABBFA_001823 PF01230 HIT domain ABBFA_001828 PF02684 Lipid-A-disaccharide synthetase ABBFA_001829 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001829 PF00593 TonB dependent receptor ABBFA_001832 PF01925 Sulfite exporter TauE/SafE ABBFA_001833 PF00793 DAHP synthetase I family ABBFA_001834 PF02654 Cobalamin-5-phosphate synthase ABBFA_001836 PF00300 Histidine phosphatase superfamily (branch 1) ABBFA_001837 PF02277 Phosphoribosyltransferase ABBFA_001838 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ABBFA_001844 PF00593 TonB dependent receptor ABBFA_001844 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001845 PF03737 Aldolase/RraA ABBFA_001847 PF04183 IucA / IucC family ABBFA_001847 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_001848 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_001848 PF04183 IucA / IucC family ABBFA_001849 PF07690 Major Facilitator Superfamily ABBFA_001850 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABBFA_001851 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_001851 PF04183 IucA / IucC family ABBFA_001852 PF04183 IucA / IucC family ABBFA_001852 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_001853 PF04073 Aminoacyl-tRNA editing domain ABBFA_001855 PF03109 ABC1 family ABBFA_001856 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001856 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_001856 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001857 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_001857 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001857 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001858 PF00487 Fatty acid desaturase ABBFA_001859 PF12852 Cupin ABBFA_001859 PF12833 Helix-turn-helix domain ABBFA_001860 PF09312 SurA N-terminal domain ABBFA_001860 PF00639 PPIC-type PPIASE domain ABBFA_001861 PF00216 Bacterial DNA-binding protein ABBFA_001864 PF02082 Transcriptional regulator ABBFA_001865 PF00266 Aminotransferase class-V ABBFA_001866 PF01592 NifU-like N terminal domain ABBFA_001867 PF01521 Iron-sulphur cluster biosynthesis ABBFA_001868 PF00226 DnaJ domain ABBFA_001868 PF07743 HSCB C-terminal oligomerisation domain ABBFA_001869 PF00012 Hsp70 protein ABBFA_001870 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_001871 PF00211 Adenylate and Guanylate cyclase catalytic domain ABBFA_001873 PF17757 UvrB interaction domain ABBFA_001873 PF00270 DEAD/DEAH box helicase ABBFA_001873 PF00271 Helicase conserved C-terminal domain ABBFA_001873 PF02559 CarD-like/TRCF domain ABBFA_001873 PF03461 TRCF domain ABBFA_001877 PF03737 Aldolase/RraA ABBFA_001878 PF13460 NAD(P)H-binding ABBFA_001879 PF01649 Ribosomal protein S20 ABBFA_001881 PF00459 Inositol monophosphatase family ABBFA_001884 PF00005 ABC transporter ABBFA_001884 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABBFA_001885 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001886 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001887 PF01432 Peptidase family M3 ABBFA_001891 PF07715 TonB-dependent Receptor Plug Domain ABBFA_001891 PF00593 TonB dependent receptor ABBFA_001892 PF03544 Gram-negative bacterial TonB protein C-terminal ABBFA_001893 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_001894 PF02472 Biopolymer transport protein ExbD/TolR ABBFA_001895 PF02472 Biopolymer transport protein ExbD/TolR ABBFA_001896 PF01274 Malate synthase ABBFA_001897 PF03969 AFG1-like ATPase ABBFA_001899 PF00743 Flavin-binding monooxygenase-like ABBFA_001901 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABBFA_001903 PF00216 Bacterial DNA-binding protein ABBFA_001904 PF00575 S1 RNA binding domain ABBFA_001905 PF02224 Cytidylate kinase ABBFA_001907 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABBFA_001909 PF03167 Uracil DNA glycosylase superfamily ABBFA_001911 PF03934 Type II secretion system (T2SS), protein K ABBFA_001913 PF02501 Type II secretion system (T2SS), protein I ABBFA_001913 PF07963 Prokaryotic N-terminal methylation motif ABBFA_001916 PF01026 TatD related DNase ABBFA_001918 PF09115 DNA polymerase III, delta subunit, C terminal ABBFA_001919 PF02348 Cytidylyltransferase ABBFA_001920 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABBFA_001921 PF00664 ABC transporter transmembrane region ABBFA_001921 PF00005 ABC transporter ABBFA_001923 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_001924 PF02195 ParB-like nuclease domain ABBFA_001924 PF17762 HTH domain found in ParB protein ABBFA_001925 PF13614 AAA domain ABBFA_001926 PF02527 rRNA small subunit methyltransferase G ABBFA_001927 PF00483 Nucleotidyl transferase ABBFA_001928 PF01636 Phosphotransferase enzyme family ABBFA_001929 PF04453 LPS transport system D ABBFA_001929 PF03968 OstA-like protein ABBFA_001930 PF00639 PPIC-type PPIASE domain ABBFA_001930 PF09312 SurA N-terminal domain ABBFA_001931 PF01116 Fructose-bisphosphate aldolase class-II ABBFA_001933 PF00162 Phosphoglycerate kinase ABBFA_001935 PF02545 Maf-like protein ABBFA_001936 PF08007 Cupin superfamily protein ABBFA_001939 PF00375 Sodium:dicarboxylate symporter family ABBFA_001940 PF06912 Protein of unknown function (DUF1275) ABBFA_001941 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ABBFA_001942 PF00664 ABC transporter transmembrane region ABBFA_001942 PF00005 ABC transporter ABBFA_001944 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_001944 PF12833 Helix-turn-helix domain ABBFA_001945 PF01597 Glycine cleavage H-protein ABBFA_001946 PF02146 Sir2 family ABBFA_001947 PF00474 Sodium:solute symporter family ABBFA_001948 PF01037 Lrp/AsnC ligand binding domain ABBFA_001949 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ABBFA_001949 PF00171 Aldehyde dehydrogenase family ABBFA_001949 PF14850 DNA-binding domain of Proline dehydrogenase ABBFA_001949 PF01619 Proline dehydrogenase ABBFA_001950 PF04229 GrpB protein ABBFA_001951 PF05958 tRNA (Uracil-5-)-methyltransferase ABBFA_001953 PF09992 Phosphodiester glycosidase ABBFA_001955 PF04264 YceI-like domain ABBFA_001957 PF02779 Transketolase, pyrimidine binding domain ABBFA_001957 PF02780 Transketolase, C-terminal domain ABBFA_001957 PF00456 Transketolase, thiamine diphosphate binding domain ABBFA_001958 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABBFA_001958 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABBFA_001958 PF02772 S-adenosylmethionine synthetase, central domain ABBFA_001962 PF00905 Penicillin binding protein transpeptidase domain ABBFA_001966 PF02075 Crossover junction endodeoxyribonuclease RuvC ABBFA_001967 PF03853 YjeF-related protein N-terminus ABBFA_001967 PF01256 Carbohydrate kinase ABBFA_001968 PF08331 Domain of unknown function (DUF1730) ABBFA_001969 PF04055 Radical SAM superfamily ABBFA_001969 PF06968 Biotin and Thiamin Synthesis associated domain ABBFA_001972 PF16970 Type-1 fimbrial protein, A ABBFA_001973 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABBFA_001973 PF02753 Pili assembly chaperone PapD, C-terminal domain ABBFA_001974 PF13954 PapC N-terminal domain ABBFA_001974 PF00577 Outer membrane usher protein ABBFA_001974 PF13953 PapC C-terminal domain ABBFA_001978 PF00892 EamA-like transporter family ABBFA_001980 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABBFA_001982 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_001982 PF03466 LysR substrate binding domain ABBFA_001987 PF00440 Bacterial regulatory proteins, tetR family ABBFA_001989 PF01709 Transcriptional regulator ABBFA_001990 PF01037 Lrp/AsnC ligand binding domain ABBFA_001992 PF00005 ABC transporter ABBFA_001993 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001994 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_001997 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_001997 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_001999 PF00296 Luciferase-like monooxygenase ABBFA_002000 PF03180 NLPA lipoprotein ABBFA_002001 PF03180 NLPA lipoprotein ABBFA_002002 PF09383 NIL domain ABBFA_002002 PF00005 ABC transporter ABBFA_002003 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002004 PF06071 Protein of unknown function (DUF933) ABBFA_002004 PF01926 50S ribosome-binding GTPase ABBFA_002009 PF03591 AzlC protein ABBFA_002010 PF05437 Branched-chain amino acid transport protein (AzlD) ABBFA_002012 PF02222 ATP-grasp domain ABBFA_002013 PF01909 Nucleotidyltransferase domain ABBFA_002013 PF01966 HD domain ABBFA_002013 PF08335 GlnD PII-uridylyltransferase ABBFA_002014 PF00155 Aminotransferase class I and II ABBFA_002016 PF12833 Helix-turn-helix domain ABBFA_002016 PF12852 Cupin ABBFA_002017 PF00255 Glutathione peroxidase ABBFA_002018 PF01641 SelR domain ABBFA_002019 PF00155 Aminotransferase class I and II ABBFA_002020 PF00375 Sodium:dicarboxylate symporter family ABBFA_002021 PF17763 Glutaminase/Asparaginase C-terminal domain ABBFA_002021 PF00710 Asparaginase, N-terminal ABBFA_002022 PF14579 Helix-hairpin-helix motif ABBFA_002022 PF01336 OB-fold nucleic acid binding domain ABBFA_002022 PF02811 PHP domain ABBFA_002022 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABBFA_002022 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABBFA_002023 PF00588 SpoU rRNA Methylase family ABBFA_002024 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_002027 PF13192 Thioredoxin domain ABBFA_002027 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002028 PF13192 Thioredoxin domain ABBFA_002028 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002031 PF03466 LysR substrate binding domain ABBFA_002031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002032 PF01758 Sodium Bile acid symporter family ABBFA_002033 PF01022 Bacterial regulatory protein, arsR family ABBFA_002034 PF03960 ArsC family ABBFA_002036 PF01979 Amidohydrolase family ABBFA_002036 PF13382 Adenine deaminase C-terminal domain ABBFA_002038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002038 PF03466 LysR substrate binding domain ABBFA_002040 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABBFA_002041 PF01177 Asp/Glu/Hydantoin racemase ABBFA_002042 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABBFA_002043 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002044 PF00005 ABC transporter ABBFA_002045 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABBFA_002047 PF00083 Sugar (and other) transporter ABBFA_002048 PF00296 Luciferase-like monooxygenase ABBFA_002052 PF01654 Cytochrome bd terminal oxidase subunit I ABBFA_002053 PF02322 Cytochrome bd terminal oxidase subunit II ABBFA_002055 PF00155 Aminotransferase class I and II ABBFA_002055 PF00392 Bacterial regulatory proteins, gntR family ABBFA_002056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002056 PF03466 LysR substrate binding domain ABBFA_002057 PF03466 LysR substrate binding domain ABBFA_002057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002060 PF00698 Acyl transferase domain ABBFA_002061 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG ABBFA_002063 PF01039 Carboxyl transferase domain ABBFA_002064 PF06857 Malonate decarboxylase delta subunit (MdcD) ABBFA_002065 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ABBFA_002066 PF16957 Malonate decarboxylase, alpha subunit, transporter ABBFA_002068 PF07690 Major Facilitator Superfamily ABBFA_002071 PF00392 Bacterial regulatory proteins, gntR family ABBFA_002072 PF04172 LrgB-like family ABBFA_002073 PF03788 LrgA family ABBFA_002074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002074 PF03466 LysR substrate binding domain ABBFA_002075 PF14834 Glutathione S-transferase, C-terminal domain ABBFA_002075 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_002076 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_002077 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002077 PF03466 LysR substrate binding domain ABBFA_002079 PF00581 Rhodanese-like domain ABBFA_002080 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_002082 PF00266 Aminotransferase class-V ABBFA_002084 PF01810 LysE type translocator ABBFA_002085 PF03466 LysR substrate binding domain ABBFA_002085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002086 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_002087 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_002088 PF00005 ABC transporter ABBFA_002089 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002090 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002092 PF00072 Response regulator receiver domain ABBFA_002093 PF00072 Response regulator receiver domain ABBFA_002093 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_002093 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_002093 PF09308 LuxQ, periplasmic ABBFA_002095 PF01037 Lrp/AsnC ligand binding domain ABBFA_002095 PF13404 AsnC-type helix-turn-helix domain ABBFA_002097 PF00717 Peptidase S24-like ABBFA_002102 PF06628 Catalase-related immune-responsive ABBFA_002102 PF00199 Catalase ABBFA_002102 PF18011 C-terminal domain found in long catalases ABBFA_002104 PF00994 Probable molybdopterin binding domain ABBFA_002104 PF02464 Competence-damaged protein ABBFA_002104 PF18146 Damage-inducible protein CinA KH domain ABBFA_002111 PF03466 LysR substrate binding domain ABBFA_002111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002116 PF00501 AMP-binding enzyme ABBFA_002116 PF13193 AMP-binding enzyme C-terminal domain ABBFA_002117 PF00440 Bacterial regulatory proteins, tetR family ABBFA_002118 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_002118 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_002118 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_002119 PF01039 Carboxyl transferase domain ABBFA_002120 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002121 PF00364 Biotin-requiring enzyme ABBFA_002121 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_002121 PF02785 Biotin carboxylase C-terminal domain ABBFA_002121 PF00289 Biotin carboxylase, N-terminal domain ABBFA_002122 PF00682 HMGL-like ABBFA_002123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002123 PF03466 LysR substrate binding domain ABBFA_002126 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_002126 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_002126 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_002126 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_002128 PF07690 Major Facilitator Superfamily ABBFA_002130 PF01144 Coenzyme A transferase ABBFA_002131 PF01144 Coenzyme A transferase ABBFA_002132 PF07690 Major Facilitator Superfamily ABBFA_002133 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_002133 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_002133 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_002134 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002136 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_002136 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_002136 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABBFA_002137 PF02803 Thiolase, C-terminal domain ABBFA_002137 PF00108 Thiolase, N-terminal domain ABBFA_002138 PF09339 IclR helix-turn-helix domain ABBFA_002139 PF07690 Major Facilitator Superfamily ABBFA_002140 PF03060 Nitronate monooxygenase ABBFA_002141 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002142 PF09339 IclR helix-turn-helix domain ABBFA_002143 PF02515 CoA-transferase family III ABBFA_002144 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_002144 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_002144 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_002145 PF07690 Major Facilitator Superfamily ABBFA_002146 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_002147 PF00266 Aminotransferase class-V ABBFA_002148 PF01266 FAD dependent oxidoreductase ABBFA_002149 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002150 PF00005 ABC transporter ABBFA_002150 PF08402 TOBE domain ABBFA_002152 PF00392 Bacterial regulatory proteins, gntR family ABBFA_002152 PF07702 UTRA domain ABBFA_002153 PF01494 FAD binding domain ABBFA_002154 PF01614 Bacterial transcriptional regulator ABBFA_002154 PF09339 IclR helix-turn-helix domain ABBFA_002155 PF02525 Flavodoxin-like fold ABBFA_002156 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002156 PF03466 LysR substrate binding domain ABBFA_002157 PF02627 Carboxymuconolactone decarboxylase family ABBFA_002158 PF00171 Aldehyde dehydrogenase family ABBFA_002160 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABBFA_002162 PF00171 Aldehyde dehydrogenase family ABBFA_002163 PF00296 Luciferase-like monooxygenase ABBFA_002164 PF01613 Flavin reductase like domain ABBFA_002165 PF12697 Alpha/beta hydrolase family ABBFA_002169 PF01292 Prokaryotic cytochrome b561 ABBFA_002170 PF00199 Catalase ABBFA_002171 PF07690 Major Facilitator Superfamily ABBFA_002172 PF00682 HMGL-like ABBFA_002173 PF02515 CoA-transferase family III ABBFA_002179 PF00313 'Cold-shock' DNA-binding domain ABBFA_002186 PF00580 UvrD/REP helicase N-terminal domain ABBFA_002186 PF13361 UvrD-like helicase C-terminal domain ABBFA_002188 PF02463 RecF/RecN/SMC N terminal domain ABBFA_002189 PF03061 Thioesterase superfamily ABBFA_002190 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_002191 PF07848 PaaX-like protein ABBFA_002191 PF08223 PaaX-like protein C-terminal domain ABBFA_002192 PF14535 AMP-binding enzyme C-terminal domain ABBFA_002192 PF00501 AMP-binding enzyme ABBFA_002193 PF02803 Thiolase, C-terminal domain ABBFA_002193 PF00108 Thiolase, N-terminal domain ABBFA_002194 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABBFA_002194 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_002194 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_002195 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002196 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002197 PF00970 Oxidoreductase FAD-binding domain ABBFA_002197 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_002197 PF00175 Oxidoreductase NAD-binding domain ABBFA_002198 PF01883 Iron-sulfur cluster assembly protein ABBFA_002199 PF05138 Phenylacetic acid catabolic protein ABBFA_002200 PF06243 Phenylacetic acid degradation B ABBFA_002201 PF05138 Phenylacetic acid catabolic protein ABBFA_002202 PF00171 Aldehyde dehydrogenase family ABBFA_002202 PF01575 MaoC like domain ABBFA_002203 PF03315 Serine dehydratase beta chain ABBFA_002203 PF03313 Serine dehydratase alpha chain ABBFA_002204 PF13520 Amino acid permease ABBFA_002205 PF00171 Aldehyde dehydrogenase family ABBFA_002206 PF00083 Sugar (and other) transporter ABBFA_002208 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_002208 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002209 PF01266 FAD dependent oxidoreductase ABBFA_002210 PF05544 Proline racemase ABBFA_002211 PF00392 Bacterial regulatory proteins, gntR family ABBFA_002213 PF00701 Dihydrodipicolinate synthetase family ABBFA_002215 PF00376 MerR family regulatory protein ABBFA_002215 PF09278 MerR, DNA binding ABBFA_002216 PF02677 Epoxyqueuosine reductase QueH ABBFA_002219 PF07690 Major Facilitator Superfamily ABBFA_002220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABBFA_002222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002222 PF03466 LysR substrate binding domain ABBFA_002228 PF07724 AAA domain (Cdc48 subfamily) ABBFA_002228 PF17871 AAA lid domain ABBFA_002228 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_002228 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_002230 PF00691 OmpA family ABBFA_002230 PF01389 OmpA-like transmembrane domain ABBFA_002244 PF00005 ABC transporter ABBFA_002245 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_002246 PF01425 Amidase ABBFA_002247 PF01402 Ribbon-helix-helix protein, copG family ABBFA_002247 PF08753 NikR C terminal nickel binding domain ABBFA_002249 PF01638 HxlR-like helix-turn-helix ABBFA_002250 PF02525 Flavodoxin-like fold ABBFA_002251 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_002251 PF00289 Biotin carboxylase, N-terminal domain ABBFA_002251 PF02785 Biotin carboxylase C-terminal domain ABBFA_002254 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_002254 PF00107 Zinc-binding dehydrogenase ABBFA_002254 PF13823 Alcohol dehydrogenase GroES-associated ABBFA_002256 PF00440 Bacterial regulatory proteins, tetR family ABBFA_002261 PF00654 Voltage gated chloride channel ABBFA_002262 PF00289 Biotin carboxylase, N-terminal domain ABBFA_002262 PF00364 Biotin-requiring enzyme ABBFA_002262 PF02785 Biotin carboxylase C-terminal domain ABBFA_002262 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_002264 PF07286 Protein of unknown function (DUF1445) ABBFA_002265 PF03746 LamB/YcsF family ABBFA_002266 PF01566 Natural resistance-associated macrophage protein ABBFA_002267 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002267 PF03466 LysR substrate binding domain ABBFA_002271 PF03527 RHS protein ABBFA_002271 PF05593 RHS Repeat ABBFA_002275 PF03527 RHS protein ABBFA_002275 PF05593 RHS Repeat ABBFA_002275 PF14220 Domain of unknown function (DUF4329) ABBFA_002276 PF16671 Actin cross-linking domain ABBFA_002276 PF04717 Type VI secretion system, phage-baseplate injector ABBFA_002281 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_002281 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_002286 PF07690 Major Facilitator Superfamily ABBFA_002288 PF03279 Bacterial lipid A biosynthesis acyltransferase ABBFA_002289 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_002289 PF00563 EAL domain ABBFA_002289 PF03707 Bacterial signalling protein N terminal repeat ABBFA_002291 PF00892 EamA-like transporter family ABBFA_002292 PF01037 Lrp/AsnC ligand binding domain ABBFA_002293 PF05190 MutS family domain IV ABBFA_002293 PF05188 MutS domain II ABBFA_002293 PF01624 MutS domain I ABBFA_002293 PF00488 MutS domain V ABBFA_002293 PF05192 MutS domain III ABBFA_002295 PF11953 Domain of unknown function (DUF3470) ABBFA_002295 PF00037 4Fe-4S binding domain ABBFA_002297 PF01596 O-methyltransferase ABBFA_002299 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_002300 PF01205 Uncharacterized protein family UPF0029 ABBFA_002302 PF00005 ABC transporter ABBFA_002302 PF03412 Peptidase C39 family ABBFA_002302 PF00664 ABC transporter transmembrane region ABBFA_002303 PF02321 Outer membrane efflux protein ABBFA_002304 PF00005 ABC transporter ABBFA_002304 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABBFA_002305 PF03968 OstA-like protein ABBFA_002308 PF01380 SIS domain ABBFA_002308 PF00571 CBS domain ABBFA_002309 PF09190 DALR domain ABBFA_002309 PF01406 tRNA synthetases class I (C) catalytic domain ABBFA_002311 PF00589 Phage integrase family ABBFA_002319 PF13229 Right handed beta helix region ABBFA_002319 PF12708 Pectate lyase superfamily protein ABBFA_002322 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) ABBFA_002326 PF06381 Protein of unknown function (DUF1073) ABBFA_002339 PF01638 HxlR-like helix-turn-helix ABBFA_002340 PF07690 Major Facilitator Superfamily ABBFA_002344 PF03807 NADP oxidoreductase coenzyme F420-dependent ABBFA_002344 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABBFA_002346 PF00313 'Cold-shock' DNA-binding domain ABBFA_002347 PF01810 LysE type translocator ABBFA_002353 PF13742 OB-fold nucleic acid binding domain ABBFA_002353 PF02601 Exonuclease VII, large subunit ABBFA_002360 PF09278 MerR, DNA binding ABBFA_002360 PF00376 MerR family regulatory protein ABBFA_002361 PF00403 Heavy-metal-associated domain ABBFA_002363 PF03466 LysR substrate binding domain ABBFA_002363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002364 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_002364 PF00355 Rieske [2Fe-2S] domain ABBFA_002365 PF00866 Ring hydroxylating beta subunit ABBFA_002366 PF00970 Oxidoreductase FAD-binding domain ABBFA_002366 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_002366 PF00175 Oxidoreductase NAD-binding domain ABBFA_002367 PF00106 short chain dehydrogenase ABBFA_002368 PF03594 Benzoate membrane transport protein ABBFA_002369 PF07690 Major Facilitator Superfamily ABBFA_002371 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABBFA_002371 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABBFA_002372 PF00270 DEAD/DEAH box helicase ABBFA_002372 PF11898 Domain of unknown function (DUF3418) ABBFA_002372 PF04408 Helicase associated domain (HA2) ABBFA_002372 PF00271 Helicase conserved C-terminal domain ABBFA_002372 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ABBFA_002373 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABBFA_002373 PF00578 AhpC/TSA family ABBFA_002377 PF13192 Thioredoxin domain ABBFA_002377 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002379 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_002379 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_002381 PF02390 Putative methyltransferase ABBFA_002382 PF13417 Glutathione S-transferase, N-terminal domain ABBFA_002382 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_002384 PF00691 OmpA family ABBFA_002384 PF13488 Glycine zipper ABBFA_002385 PF01979 Amidohydrolase family ABBFA_002386 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABBFA_002386 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABBFA_002388 PF01170 Putative RNA methylase family UPF0020 ABBFA_002388 PF10672 S-adenosylmethionine-dependent methyltransferase ABBFA_002388 PF02926 THUMP domain ABBFA_002391 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_002391 PF17871 AAA lid domain ABBFA_002391 PF07724 AAA domain (Cdc48 subfamily) ABBFA_002391 PF02861 Clp amino terminal domain, pathogenicity island component ABBFA_002391 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_002394 PF02566 OsmC-like protein ABBFA_002395 PF13545 Crp-like helix-turn-helix domain ABBFA_002395 PF00027 Cyclic nucleotide-binding domain ABBFA_002396 PF00248 Aldo/keto reductase family ABBFA_002399 PF00709 Adenylosuccinate synthetase ABBFA_002400 PF13393 Histidyl-tRNA synthetase ABBFA_002402 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABBFA_002402 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABBFA_002403 PF02272 DHHA1 domain ABBFA_002403 PF01411 tRNA synthetases class II (A) ABBFA_002403 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABBFA_002404 PF01842 ACT domain ABBFA_002404 PF13840 ACT domain ABBFA_002404 PF00696 Amino acid kinase family ABBFA_002405 PF02599 Global regulator protein family ABBFA_002406 PF01351 Ribonuclease HII ABBFA_002408 PF01292 Prokaryotic cytochrome b561 ABBFA_002409 PF00962 Adenosine/AMP deaminase ABBFA_002410 PF00860 Permease family ABBFA_002412 PF00743 Flavin-binding monooxygenase-like ABBFA_002413 PF00106 short chain dehydrogenase ABBFA_002415 PF02678 Pirin ABBFA_002415 PF17954 Quercetinase C-terminal cupin domain ABBFA_002416 PF17932 Tetracyclin repressor-like, C-terminal domain ABBFA_002416 PF00440 Bacterial regulatory proteins, tetR family ABBFA_002418 PF00106 short chain dehydrogenase ABBFA_002419 PF00743 Flavin-binding monooxygenase-like ABBFA_002420 PF04072 Leucine carboxyl methyltransferase ABBFA_002421 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_002421 PF12833 Helix-turn-helix domain ABBFA_002422 PF00743 Flavin-binding monooxygenase-like ABBFA_002423 PF00106 short chain dehydrogenase ABBFA_002424 PF07859 alpha/beta hydrolase fold ABBFA_002425 PF05199 GMC oxidoreductase ABBFA_002426 PF03573 outer membrane porin, OprD family ABBFA_002427 PF07690 Major Facilitator Superfamily ABBFA_002428 PF00355 Rieske [2Fe-2S] domain ABBFA_002429 PF00175 Oxidoreductase NAD-binding domain ABBFA_002429 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_002432 PF07690 Major Facilitator Superfamily ABBFA_002433 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002434 PF00171 Aldehyde dehydrogenase family ABBFA_002436 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_002436 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_002436 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_002437 PF03573 outer membrane porin, OprD family ABBFA_002440 PF07519 Tannase and feruloyl esterase ABBFA_002441 PF00392 Bacterial regulatory proteins, gntR family ABBFA_002441 PF07729 FCD domain ABBFA_002442 PF00171 Aldehyde dehydrogenase family ABBFA_002443 PF00701 Dihydrodipicolinate synthetase family ABBFA_002445 PF13378 Enolase C-terminal domain-like ABBFA_002446 PF07690 Major Facilitator Superfamily ABBFA_002447 PF08666 SAF domain ABBFA_002447 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABBFA_002448 PF00892 EamA-like transporter family ABBFA_002449 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_002449 PF12833 Helix-turn-helix domain ABBFA_002450 PF00171 Aldehyde dehydrogenase family ABBFA_002453 PF00324 Amino acid permease ABBFA_002454 PF04958 Arginine N-succinyltransferase beta subunit ABBFA_002455 PF00202 Aminotransferase class-III ABBFA_002457 PF00171 Aldehyde dehydrogenase family ABBFA_002459 PF00392 Bacterial regulatory proteins, gntR family ABBFA_002459 PF07729 FCD domain ABBFA_002461 PF00324 Amino acid permease ABBFA_002462 PF01266 FAD dependent oxidoreductase ABBFA_002463 PF00324 Amino acid permease ABBFA_002468 PF05593 RHS Repeat ABBFA_002468 PF03527 RHS protein ABBFA_002469 PF04717 Type VI secretion system, phage-baseplate injector ABBFA_002469 PF16671 Actin cross-linking domain ABBFA_002473 PF03180 NLPA lipoprotein ABBFA_002475 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_002476 PF00764 Arginosuccinate synthase ABBFA_002477 PF00360 Phytochrome region ABBFA_002477 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_002477 PF01590 GAF domain ABBFA_002477 PF00563 EAL domain ABBFA_002478 PF01979 Amidohydrolase family ABBFA_002479 PF00929 Exonuclease ABBFA_002481 PF00593 TonB dependent receptor ABBFA_002481 PF07715 TonB-dependent Receptor Plug Domain ABBFA_002488 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_002488 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002489 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABBFA_002489 PF00005 ABC transporter ABBFA_002490 PF12911 N-terminal TM domain of oligopeptide transport permease C ABBFA_002490 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002491 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_002492 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABBFA_002493 PF01464 Transglycosylase SLT domain ABBFA_002493 PF01476 LysM domain ABBFA_002493 PF01464 Transglycosylase SLT domain ABBFA_002493 PF01476 LysM domain ABBFA_002494 PF00929 Exonuclease ABBFA_002496 PF00293 NUDIX domain ABBFA_002496 PF09297 NADH pyrophosphatase zinc ribbon domain ABBFA_002498 PF04972 BON domain ABBFA_002499 PF02021 Uncharacterised protein family UPF0102 ABBFA_002500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABBFA_002502 PF03466 LysR substrate binding domain ABBFA_002502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002503 PF01810 LysE type translocator ABBFA_002505 PF13411 MerR HTH family regulatory protein ABBFA_002508 PF01494 FAD binding domain ABBFA_002509 PF01494 FAD binding domain ABBFA_002510 PF05195 Aminopeptidase P, N-terminal domain ABBFA_002510 PF00557 Metallopeptidase family M24 ABBFA_002517 PF00313 'Cold-shock' DNA-binding domain ABBFA_002531 PF01551 Peptidase family M23 ABBFA_002531 PF08525 Opacity-associated protein A N-terminal motif ABBFA_002531 PF01476 LysM domain ABBFA_002561 PF01555 DNA methylase ABBFA_002565 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_002578 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABBFA_002579 PF05362 Lon protease (S16) C-terminal proteolytic domain ABBFA_002579 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABBFA_002579 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_002580 PF02590 Predicted SPOUT methyltransferase ABBFA_002583 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABBFA_002583 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABBFA_002584 PF04060 Putative Fe-S cluster ABBFA_002586 PF05191 Adenylate kinase, active site lid ABBFA_002589 PF03717 Penicillin-binding Protein dimerisation domain ABBFA_002589 PF00905 Penicillin binding protein transpeptidase domain ABBFA_002592 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABBFA_002593 PF01730 UreF ABBFA_002594 PF02814 UreE urease accessory protein, N-terminal domain ABBFA_002594 PF05194 UreE urease accessory protein, C-terminal domain ABBFA_002595 PF00449 Urease alpha-subunit, N-terminal domain ABBFA_002595 PF01979 Amidohydrolase family ABBFA_002596 PF00699 Urease beta subunit ABBFA_002597 PF00547 Urease, gamma subunit ABBFA_002598 PF01774 UreD urease accessory protein ABBFA_002602 PF00463 Isocitrate lyase family ABBFA_002603 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002603 PF03466 LysR substrate binding domain ABBFA_002604 PF01595 Cyclin M transmembrane N-terminal domain ABBFA_002604 PF00571 CBS domain ABBFA_002604 PF03471 Transporter associated domain ABBFA_002605 PF03600 Citrate transporter ABBFA_002608 PF00009 Elongation factor Tu GTP binding domain ABBFA_002609 PF01507 Phosphoadenosine phosphosulfate reductase family ABBFA_002611 PF14052 Capsule assembly protein Wzi ABBFA_002612 PF01336 OB-fold nucleic acid binding domain ABBFA_002612 PF00152 tRNA synthetases class II (D, K and N) ABBFA_002615 PF00301 Rubredoxin ABBFA_002616 PF18113 Rubredoxin binding C-terminal domain ABBFA_002616 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002617 PF00561 alpha/beta hydrolase fold ABBFA_002618 PF03466 LysR substrate binding domain ABBFA_002618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002620 PF02503 Polyphosphate kinase middle domain ABBFA_002620 PF13090 Polyphosphate kinase C-terminal domain 2 ABBFA_002620 PF13089 Polyphosphate kinase N-terminal domain ABBFA_002620 PF17941 Polyphosphate kinase C-terminal domain 1 ABBFA_002621 PF00912 Transglycosylase ABBFA_002622 PF01694 Rhomboid family ABBFA_002624 PF00005 ABC transporter ABBFA_002625 PF13472 GDSL-like Lipase/Acylhydrolase family ABBFA_002626 PF00484 Carbonic anhydrase ABBFA_002627 PF00561 alpha/beta hydrolase fold ABBFA_002629 PF00593 TonB dependent receptor ABBFA_002629 PF07715 TonB-dependent Receptor Plug Domain ABBFA_002630 PF01521 Iron-sulphur cluster biosynthesis ABBFA_002630 PF01106 NifU-like domain ABBFA_002632 PF00884 Sulfatase ABBFA_002633 PF03781 Sulfatase-modifying factor enzyme 1 ABBFA_002637 PF01384 Phosphate transporter family ABBFA_002639 PF02574 Homocysteine S-methyltransferase ABBFA_002639 PF00809 Pterin binding enzyme ABBFA_002639 PF02607 B12 binding domain ABBFA_002639 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABBFA_002639 PF02310 B12 binding domain ABBFA_002640 PF02780 Transketolase, C-terminal domain ABBFA_002640 PF02779 Transketolase, pyrimidine binding domain ABBFA_002641 PF00456 Transketolase, thiamine diphosphate binding domain ABBFA_002642 PF07690 Major Facilitator Superfamily ABBFA_002644 PF03466 LysR substrate binding domain ABBFA_002644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002646 PF01263 Aldose 1-epimerase ABBFA_002647 PF07690 Major Facilitator Superfamily ABBFA_002648 PF02311 AraC-like ligand binding domain ABBFA_002648 PF12833 Helix-turn-helix domain ABBFA_002649 PF04960 Glutaminase ABBFA_002650 PF01327 Polypeptide deformylase ABBFA_002652 PF07690 Major Facilitator Superfamily ABBFA_002654 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABBFA_002654 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABBFA_002654 PF00205 Thiamine pyrophosphate enzyme, central domain ABBFA_002655 PF00171 Aldehyde dehydrogenase family ABBFA_002656 PF03447 Homoserine dehydrogenase, NAD binding domain ABBFA_002656 PF01958 Domain of unknown function DUF108 ABBFA_002658 PF12697 Alpha/beta hydrolase family ABBFA_002660 PF07690 Major Facilitator Superfamily ABBFA_002661 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002661 PF14759 Reductase C-terminal ABBFA_002662 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_002664 PF00355 Rieske [2Fe-2S] domain ABBFA_002666 PF01614 Bacterial transcriptional regulator ABBFA_002666 PF09339 IclR helix-turn-helix domain ABBFA_002669 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002671 PF00535 Glycosyl transferase family 2 ABBFA_002672 PF01522 Polysaccharide deacetylase ABBFA_002672 PF14883 Hypothetical glycosyl hydrolase family 13 ABBFA_002673 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_002674 PF07152 YaeQ protein ABBFA_002675 PF00375 Sodium:dicarboxylate symporter family ABBFA_002676 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABBFA_002676 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABBFA_002678 PF03061 Thioesterase superfamily ABBFA_002680 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_002681 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_002682 PF13977 BetI-type transcriptional repressor, C-terminal ABBFA_002682 PF00440 Bacterial regulatory proteins, tetR family ABBFA_002683 PF00171 Aldehyde dehydrogenase family ABBFA_002684 PF00732 GMC oxidoreductase ABBFA_002684 PF05199 GMC oxidoreductase ABBFA_002685 PF06039 Malate:quinone oxidoreductase (Mqo) ABBFA_002687 PF02574 Homocysteine S-methyltransferase ABBFA_002688 PF13520 Amino acid permease ABBFA_002693 PF00701 Dihydrodipicolinate synthetase family ABBFA_002694 PF00083 Sugar (and other) transporter ABBFA_002699 PF01026 TatD related DNase ABBFA_002703 PF07693 KAP family P-loop domain ABBFA_002706 PF07690 Major Facilitator Superfamily ABBFA_002707 PF13533 Biotin-lipoyl like ABBFA_002708 PF03061 Thioesterase superfamily ABBFA_002709 PF00490 Delta-aminolevulinic acid dehydratase ABBFA_002710 PF01266 FAD dependent oxidoreductase ABBFA_002714 PF00149 Calcineurin-like phosphoesterase ABBFA_002714 PF12320 Type 5 capsule protein repressor C-terminal domain ABBFA_002716 PF01168 Alanine racemase, N-terminal domain ABBFA_002717 PF00437 Type II/IV secretion system protein ABBFA_002718 PF00437 Type II/IV secretion system protein ABBFA_002719 PF01475 Ferric uptake regulator family ABBFA_002720 PF04355 SmpA / OmlA family ABBFA_002721 PF03658 RnfH family Ubiquitin ABBFA_002723 PF01814 Hemerythrin HHE cation binding domain ABBFA_002724 PF13230 Glutamine amidotransferases class-II ABBFA_002726 PF00696 Amino acid kinase family ABBFA_002727 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABBFA_002727 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABBFA_002727 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABBFA_002727 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABBFA_002728 PF00692 dUTPase ABBFA_002729 PF00580 UvrD/REP helicase N-terminal domain ABBFA_002729 PF13361 UvrD-like helicase C-terminal domain ABBFA_002730 PF00691 OmpA family ABBFA_002730 PF13488 Glycine zipper ABBFA_002731 PF01553 Acyltransferase ABBFA_002733 PF03775 Septum formation inhibitor MinC, C-terminal domain ABBFA_002734 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABBFA_002735 PF03776 Septum formation topological specificity factor MinE ABBFA_002737 PF01810 LysE type translocator ABBFA_002738 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ABBFA_002738 PF09397 Ftsk gamma domain ABBFA_002738 PF17854 FtsK alpha domain ABBFA_002738 PF01580 FtsK/SpoIIIE family ABBFA_002739 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_002740 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABBFA_002741 PF04377 Arginine-tRNA-protein transferase, C terminus ABBFA_002741 PF04376 Arginine-tRNA-protein transferase, N terminus ABBFA_002742 PF00583 Acetyltransferase (GNAT) family ABBFA_002745 PF03144 Elongation factor Tu domain 2 ABBFA_002745 PF03143 Elongation factor Tu C-terminal domain ABBFA_002745 PF00009 Elongation factor Tu GTP binding domain ABBFA_002746 PF00009 Elongation factor Tu GTP binding domain ABBFA_002746 PF03143 Elongation factor Tu C-terminal domain ABBFA_002746 PF03144 Elongation factor Tu domain 2 ABBFA_002747 PF14492 Elongation Factor G, domain II ABBFA_002747 PF00009 Elongation factor Tu GTP binding domain ABBFA_002747 PF00679 Elongation factor G C-terminus ABBFA_002747 PF03764 Elongation factor G, domain IV ABBFA_002747 PF03144 Elongation factor Tu domain 2 ABBFA_002748 PF00177 Ribosomal protein S7p/S5e ABBFA_002749 PF00164 Ribosomal protein S12/S23 ABBFA_002751 PF00109 Beta-ketoacyl synthase, N-terminal domain ABBFA_002751 PF02801 Beta-ketoacyl synthase, C-terminal domain ABBFA_002753 PF02678 Pirin ABBFA_002753 PF05726 Pirin C-terminal cupin domain ABBFA_002755 PF02540 NAD synthase ABBFA_002755 PF00795 Carbon-nitrogen hydrolase ABBFA_002758 PF00175 Oxidoreductase NAD-binding domain ABBFA_002758 PF00970 Oxidoreductase FAD-binding domain ABBFA_002758 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_002759 PF00171 Aldehyde dehydrogenase family ABBFA_002760 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_002760 PF00355 Rieske [2Fe-2S] domain ABBFA_002761 PF07859 alpha/beta hydrolase fold ABBFA_002762 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_002763 PF00180 Isocitrate/isopropylmalate dehydrogenase ABBFA_002764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002764 PF03466 LysR substrate binding domain ABBFA_002767 PF00037 4Fe-4S binding domain ABBFA_002768 PF01467 Cytidylyltransferase-like ABBFA_002769 PF01668 SmpB protein ABBFA_002770 PF03358 NADPH-dependent FMN reductase ABBFA_002772 PF01479 S4 domain ABBFA_002772 PF00849 RNA pseudouridylate synthase ABBFA_002773 PF13525 Outer membrane lipoprotein ABBFA_002774 PF01807 CHC2 zinc finger ABBFA_002774 PF08275 DNA primase catalytic core, N-terminal domain ABBFA_002774 PF08278 DNA primase DnaG DnaB-binding ABBFA_002774 PF10410 DnaB-helicase binding domain of primase ABBFA_002775 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABBFA_002775 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABBFA_002775 PF01488 Shikimate / quinate 5-dehydrogenase ABBFA_002777 PF03550 Outer membrane lipoprotein LolB ABBFA_002778 PF00288 GHMP kinases N terminal domain ABBFA_002778 PF08544 GHMP kinases C terminal ABBFA_002783 PF14572 Phosphoribosyl synthetase-associated domain ABBFA_002783 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABBFA_002784 PF01386 Ribosomal L25p family ABBFA_002785 PF01195 Peptidyl-tRNA hydrolase ABBFA_002786 PF02261 Aspartate decarboxylase ABBFA_002789 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABBFA_002791 PF03070 TENA/THI-4/PQQC family ABBFA_002791 PF08543 Phosphomethylpyrimidine kinase ABBFA_002791 PF02581 Thiamine monophosphate synthase ABBFA_002792 PF04972 BON domain ABBFA_002792 PF01476 LysM domain ABBFA_002793 PF00550 Phosphopantetheine attachment site ABBFA_002795 PF00698 Acyl transferase domain ABBFA_002796 PF01783 Ribosomal L32p protein family ABBFA_002797 PF02620 Large ribosomal RNA subunit accumulation protein YceD ABBFA_002798 PF04315 Elongation factor P hydroxylase ABBFA_002799 PF01300 Telomere recombination ABBFA_002800 PF02616 Segregation and condensation protein ScpA ABBFA_002801 PF04079 Segregation and condensation complex subunit ScpB ABBFA_002802 PF00849 RNA pseudouridylate synthase ABBFA_002802 PF01479 S4 domain ABBFA_002804 PF00155 Aminotransferase class I and II ABBFA_002805 PF06968 Biotin and Thiamin Synthesis associated domain ABBFA_002805 PF00202 Aminotransferase class-III ABBFA_002805 PF04055 Radical SAM superfamily ABBFA_002806 PF08241 Methyltransferase domain ABBFA_002806 PF12697 Alpha/beta hydrolase family ABBFA_002808 PF02358 Trehalose-phosphatase ABBFA_002809 PF00982 Glycosyltransferase family 20 ABBFA_002810 PF07690 Major Facilitator Superfamily ABBFA_002811 PF00210 Ferritin-like domain ABBFA_002812 PF01653 NAD-dependent DNA ligase adenylation domain ABBFA_002812 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ABBFA_002812 PF00533 BRCA1 C Terminus (BRCT) domain ABBFA_002812 PF12826 Helix-hairpin-helix motif ABBFA_002812 PF03120 NAD-dependent DNA ligase OB-fold domain ABBFA_002814 PF06470 SMC proteins Flexible Hinge Domain ABBFA_002814 PF02463 RecF/RecN/SMC N terminal domain ABBFA_002816 PF01925 Sulfite exporter TauE/SafE ABBFA_002818 PF03309 Type III pantothenate kinase ABBFA_002819 PF02978 Signal peptide binding domain ABBFA_002819 PF02881 SRP54-type protein, helical bundle domain ABBFA_002819 PF00448 SRP54-type protein, GTPase domain ABBFA_002821 PF01207 Dihydrouridine synthase (Dus) ABBFA_002827 PF00692 dUTPase ABBFA_002830 PF01048 Phosphorylase superfamily ABBFA_002831 PF10609 NUBPL iron-transfer P-loop NTPase ABBFA_002833 PF09334 tRNA synthetases class I (M) ABBFA_002833 PF01588 Putative tRNA binding domain ABBFA_002838 PF13533 Biotin-lipoyl like ABBFA_002839 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_002842 PF05552 Conserved TM helix ABBFA_002845 PF00175 Oxidoreductase NAD-binding domain ABBFA_002845 PF00970 Oxidoreductase FAD-binding domain ABBFA_002846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002846 PF03466 LysR substrate binding domain ABBFA_002848 PF00313 'Cold-shock' DNA-binding domain ABBFA_002850 PF00361 Proton-conducting membrane transporter ABBFA_002851 PF00361 Proton-conducting membrane transporter ABBFA_002852 PF00361 Proton-conducting membrane transporter ABBFA_002852 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABBFA_002853 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABBFA_002854 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABBFA_002855 PF12838 4Fe-4S dicluster domain ABBFA_002856 PF00146 NADH dehydrogenase ABBFA_002857 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_002857 PF00384 Molybdopterin oxidoreductase ABBFA_002857 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABBFA_002858 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABBFA_002858 PF10531 SLBB domain ABBFA_002858 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABBFA_002860 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABBFA_002860 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABBFA_002861 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABBFA_002862 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABBFA_002863 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_002863 PF17151 Periplasmic sensor domain ABBFA_002865 PF00672 HAMP domain ABBFA_002865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_002865 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_002866 PF00072 Response regulator receiver domain ABBFA_002866 PF00486 Transcriptional regulatory protein, C terminal ABBFA_002867 PF03477 ATP cone domain ABBFA_002867 PF02867 Ribonucleotide reductase, barrel domain ABBFA_002867 PF00317 Ribonucleotide reductase, all-alpha domain ABBFA_002869 PF00268 Ribonucleotide reductase, small chain ABBFA_002871 PF02567 Phenazine biosynthesis-like protein ABBFA_002877 PF16295 Tetracyclin repressor-like, C-terminal domain ABBFA_002877 PF00440 Bacterial regulatory proteins, tetR family ABBFA_002878 PF01613 Flavin reductase like domain ABBFA_002879 PF01717 Cobalamin-independent synthase, Catalytic domain ABBFA_002879 PF08267 Cobalamin-independent synthase, N-terminal domain ABBFA_002881 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002881 PF03466 LysR substrate binding domain ABBFA_002883 PF01810 LysE type translocator ABBFA_002885 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_002885 PF12833 Helix-turn-helix domain ABBFA_002886 PF07687 Peptidase dimerisation domain ABBFA_002886 PF01546 Peptidase family M20/M25/M40 ABBFA_002888 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002888 PF03466 LysR substrate binding domain ABBFA_002889 PF07690 Major Facilitator Superfamily ABBFA_002891 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002891 PF03466 LysR substrate binding domain ABBFA_002892 PF00890 FAD binding domain ABBFA_002892 PF14537 Cytochrome c3 ABBFA_002894 PF02515 CoA-transferase family III ABBFA_002895 PF07690 Major Facilitator Superfamily ABBFA_002896 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_002896 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_002896 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_002897 PF03466 LysR substrate binding domain ABBFA_002897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002898 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_002898 PF00107 Zinc-binding dehydrogenase ABBFA_002899 PF00962 Adenosine/AMP deaminase ABBFA_002904 PF02445 Quinolinate synthetase A protein ABBFA_002905 PF01960 ArgJ family ABBFA_002906 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABBFA_002906 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABBFA_002907 PF00893 Small Multidrug Resistance protein ABBFA_002909 PF05275 Copper resistance protein B precursor (CopB) ABBFA_002910 PF00394 Multicopper oxidase ABBFA_002910 PF07731 Multicopper oxidase ABBFA_002910 PF07732 Multicopper oxidase ABBFA_002913 PF00834 Ribulose-phosphate 3 epimerase family ABBFA_002914 PF00756 Putative esterase ABBFA_002916 PF04445 Putative SAM-dependent methyltransferase ABBFA_002917 PF00814 Glycoprotease family ABBFA_002918 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_002919 PF00293 NUDIX domain ABBFA_002927 PF04715 Anthranilate synthase component I, N terminal region ABBFA_002927 PF00425 chorismate binding enzyme ABBFA_002928 PF00155 Aminotransferase class I and II ABBFA_002929 PF00815 Histidinol dehydrogenase ABBFA_002930 PF01634 ATP phosphoribosyltransferase ABBFA_002931 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABBFA_002932 PF01722 BolA-like protein ABBFA_002933 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABBFA_002934 PF04963 Sigma-54 factor, core binding domain ABBFA_002934 PF04552 Sigma-54, DNA binding domain ABBFA_002934 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABBFA_002941 PF00795 Carbon-nitrogen hydrolase ABBFA_002943 PF01047 MarR family ABBFA_002944 PF02566 OsmC-like protein ABBFA_002945 PF00437 Type II/IV secretion system protein ABBFA_002949 PF01367 5'-3' exonuclease, C-terminal SAM fold ABBFA_002949 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABBFA_002949 PF00476 DNA polymerase family A ABBFA_002949 PF01612 3'-5' exonuclease ABBFA_002950 PF02325 YGGT family ABBFA_002951 PF03807 NADP oxidoreductase coenzyme F420-dependent ABBFA_002951 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABBFA_002952 PF11734 TilS substrate C-terminal domain ABBFA_002952 PF01171 PP-loop family ABBFA_002952 PF09179 TilS substrate binding domain ABBFA_002953 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABBFA_002954 PF02541 Ppx/GppA phosphatase family ABBFA_002955 PF00085 Thioredoxin ABBFA_002956 PF07497 Rho termination factor, RNA-binding domain ABBFA_002956 PF07498 Rho termination factor, N-terminal domain ABBFA_002956 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABBFA_002958 PF00216 Bacterial DNA-binding protein ABBFA_002959 PF03147 Ferredoxin-fold anticodon binding domain ABBFA_002959 PF03483 B3/4 domain ABBFA_002959 PF01588 Putative tRNA binding domain ABBFA_002959 PF03484 tRNA synthetase B5 domain ABBFA_002959 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABBFA_002960 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABBFA_002960 PF01409 tRNA synthetases class II core domain (F) ABBFA_002963 PF00453 Ribosomal protein L20 ABBFA_002964 PF01632 Ribosomal protein L35 ABBFA_002965 PF07690 Major Facilitator Superfamily ABBFA_002966 PF09335 SNARE associated Golgi protein ABBFA_002967 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_002967 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_002968 PF00707 Translation initiation factor IF-3, C-terminal domain ABBFA_002968 PF05198 Translation initiation factor IF-3, N-terminal domain ABBFA_002969 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABBFA_002969 PF03129 Anticodon binding domain ABBFA_002969 PF02824 TGS domain ABBFA_002969 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABBFA_002970 PF00501 AMP-binding enzyme ABBFA_002970 PF13193 AMP-binding enzyme C-terminal domain ABBFA_002971 PF04751 Protein of unknown function (DUF615) ABBFA_002972 PF00381 PTS HPr component phosphorylation site ABBFA_002973 PF03668 P-loop ATPase protein family ABBFA_002974 PF02569 Pantoate-beta-alanine ligase ABBFA_002975 PF02548 Ketopantoate hydroxymethyltransferase ABBFA_002976 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABBFA_002977 PF12626 Polymerase A arginine-rich C-terminus ABBFA_002977 PF12627 Probable RNA and SrmB- binding site of polymerase A ABBFA_002977 PF01743 Poly A polymerase head domain ABBFA_002979 PF03819 MazG nucleotide pyrophosphohydrolase domain ABBFA_002981 PF02824 TGS domain ABBFA_002981 PF04607 Region found in RelA / SpoT proteins ABBFA_002981 PF13291 ACT domain ABBFA_002982 PF05958 tRNA (Uracil-5-)-methyltransferase ABBFA_002984 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_002985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_002985 PF00672 HAMP domain ABBFA_002985 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_002985 PF01627 Hpt domain ABBFA_002985 PF00072 Response regulator receiver domain ABBFA_002985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ABBFA_002986 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_002987 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABBFA_002987 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABBFA_002988 PF01261 Xylose isomerase-like TIM barrel ABBFA_002990 PF00106 short chain dehydrogenase ABBFA_002991 PF02233 NAD(P) transhydrogenase beta subunit ABBFA_002992 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ABBFA_002993 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABBFA_002993 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ABBFA_002994 PF00892 EamA-like transporter family ABBFA_002996 PF07690 Major Facilitator Superfamily ABBFA_002997 PF01207 Dihydrouridine synthase (Dus) ABBFA_002999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_002999 PF03466 LysR substrate binding domain ABBFA_003001 PF00899 ThiF family ABBFA_003002 PF00694 Aconitase C-terminal domain ABBFA_003002 PF00330 Aconitase family (aconitate hydratase) ABBFA_003003 PF01026 TatD related DNase ABBFA_003006 PF03144 Elongation factor Tu domain 2 ABBFA_003006 PF16658 Class II release factor RF3, C-terminal domain ABBFA_003006 PF00009 Elongation factor Tu GTP binding domain ABBFA_003010 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_003010 PF03707 Bacterial signalling protein N terminal repeat ABBFA_003010 PF00563 EAL domain ABBFA_003011 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABBFA_003011 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABBFA_003012 PF10369 Small subunit of acetolactate synthase ABBFA_003013 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABBFA_003013 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABBFA_003013 PF00205 Thiamine pyrophosphate enzyme, central domain ABBFA_003015 PF09334 tRNA synthetases class I (M) ABBFA_003015 PF13603 Leucyl-tRNA synthetase, Domain 2 ABBFA_003015 PF08264 Anticodon-binding domain of tRNA ABBFA_003015 PF00133 tRNA synthetases class I (I, L, M and V) ABBFA_003018 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_003019 PF12704 MacB-like periplasmic core domain ABBFA_003019 PF02687 FtsX-like permease family ABBFA_003019 PF00005 ABC transporter ABBFA_003020 PF02321 Outer membrane efflux protein ABBFA_003023 PF00929 Exonuclease ABBFA_003024 PF03193 RsgA GTPase ABBFA_003026 PF00462 Glutaredoxin ABBFA_003027 PF02556 Preprotein translocase subunit SecB ABBFA_003029 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABBFA_003029 PF01926 50S ribosome-binding GTPase ABBFA_003030 PF13360 PQQ-like domain ABBFA_003032 PF03129 Anticodon binding domain ABBFA_003032 PF13393 Histidyl-tRNA synthetase ABBFA_003033 PF04551 GcpE protein ABBFA_003034 PF13464 Domain of unknown function (DUF4115) ABBFA_003036 PF04055 Radical SAM superfamily ABBFA_003037 PF00334 Nucleoside diphosphate kinase ABBFA_003038 PF04384 Iron-sulphur cluster assembly ABBFA_003039 PF01569 PAP2 superfamily ABBFA_003040 PF13439 Glycosyltransferase Family 4 ABBFA_003040 PF00534 Glycosyl transferases group 1 ABBFA_003041 PF17804 Tail specific protease N-terminal domain ABBFA_003041 PF03572 Peptidase family S41 ABBFA_003041 PF11818 C-terminal domain of tail specific protease (DUF3340) ABBFA_003041 PF00595 PDZ domain ABBFA_003042 PF00933 Glycosyl hydrolase family 3 N terminal domain ABBFA_003044 PF00561 alpha/beta hydrolase fold ABBFA_003045 PF00171 Aldehyde dehydrogenase family ABBFA_003046 PF00171 Aldehyde dehydrogenase family ABBFA_003047 PF01202 Shikimate kinase ABBFA_003048 PF02447 GntP family permease ABBFA_003049 PF01081 KDPG and KHG aldolase ABBFA_003050 PF00920 Dehydratase family ABBFA_003051 PF00871 Acetokinase family ABBFA_003052 PF07085 DRTGG domain ABBFA_003052 PF01515 Phosphate acetyl/butaryl transferase ABBFA_003053 PF05683 Fumarase C-terminus ABBFA_003053 PF05681 Fumarate hydratase (Fumerase) ABBFA_003056 PF06689 ClpX C4-type zinc finger ABBFA_003056 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_003056 PF07724 AAA domain (Cdc48 subfamily) ABBFA_003057 PF00574 Clp protease ABBFA_003058 PF05697 Bacterial trigger factor protein (TF) ABBFA_003058 PF05698 Bacterial trigger factor protein (TF) C-terminus ABBFA_003058 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_003059 PF00593 TonB dependent receptor ABBFA_003059 PF07715 TonB-dependent Receptor Plug Domain ABBFA_003060 PF13640 2OG-Fe(II) oxygenase superfamily ABBFA_003060 PF18331 PKHD-type hydroxylase C-terminal domain ABBFA_003061 PF08502 LeuA allosteric (dimerisation) domain ABBFA_003061 PF00682 HMGL-like ABBFA_003062 PF00561 alpha/beta hydrolase fold ABBFA_003063 PF00561 alpha/beta hydrolase fold ABBFA_003063 PF07021 Methionine biosynthesis protein MetW ABBFA_003065 PF01725 Ham1 family ABBFA_003067 PF02416 mttA/Hcf106 family ABBFA_003068 PF02416 mttA/Hcf106 family ABBFA_003069 PF00902 Sec-independent protein translocase protein (TatC) ABBFA_003073 PF01790 Prolipoprotein diacylglyceryl transferase ABBFA_003076 PF00303 Thymidylate synthase ABBFA_003077 PF00186 Dihydrofolate reductase ABBFA_003079 PF01625 Peptide methionine sulfoxide reductase ABBFA_003081 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_003083 PF01842 ACT domain ABBFA_003083 PF00551 Formyl transferase ABBFA_003085 PF00171 Aldehyde dehydrogenase family ABBFA_003086 PF00830 Ribosomal L28 family ABBFA_003087 PF00471 Ribosomal protein L33 ABBFA_003088 PF00999 Sodium/hydrogen exchanger family ABBFA_003088 PF02254 TrkA-N domain ABBFA_003092 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ABBFA_003093 PF13361 UvrD-like helicase C-terminal domain ABBFA_003093 PF00580 UvrD/REP helicase N-terminal domain ABBFA_003096 PF01131 DNA topoisomerase ABBFA_003096 PF01396 Topoisomerase DNA binding C4 zinc finger ABBFA_003096 PF01751 Toprim domain ABBFA_003096 PF08272 Topoisomerase I zinc-ribbon-like ABBFA_003098 PF01638 HxlR-like helix-turn-helix ABBFA_003099 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_003099 PF00107 Zinc-binding dehydrogenase ABBFA_003102 PF01810 LysE type translocator ABBFA_003103 PF03279 Bacterial lipid A biosynthesis acyltransferase ABBFA_003105 PF00375 Sodium:dicarboxylate symporter family ABBFA_003107 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABBFA_003107 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABBFA_003111 PF01416 tRNA pseudouridine synthase ABBFA_003113 PF01176 Translation initiation factor 1A / IF-1 ABBFA_003116 PF00180 Isocitrate/isopropylmalate dehydrogenase ABBFA_003118 PF00694 Aconitase C-terminal domain ABBFA_003119 PF00330 Aconitase family (aconitate hydratase) ABBFA_003121 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_003121 PF03466 LysR substrate binding domain ABBFA_003123 PF00293 NUDIX domain ABBFA_003124 PF05524 PEP-utilising enzyme, N-terminal ABBFA_003124 PF02896 PEP-utilising enzyme, TIM barrel domain ABBFA_003124 PF01590 GAF domain ABBFA_003124 PF00391 PEP-utilising enzyme, mobile domain ABBFA_003125 PF00141 Peroxidase ABBFA_003126 PF12706 Beta-lactamase superfamily domain ABBFA_003127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_003127 PF03466 LysR substrate binding domain ABBFA_003129 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_003130 PF08279 HTH domain ABBFA_003130 PF13280 WYL domain ABBFA_003131 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_003132 PF00849 RNA pseudouridylate synthase ABBFA_003132 PF01479 S4 domain ABBFA_003135 PF00575 S1 RNA binding domain ABBFA_003135 PF12111 Polyribonucleotide phosphorylase C terminal ABBFA_003135 PF10150 Ribonuclease E/G family ABBFA_003136 PF13193 AMP-binding enzyme C-terminal domain ABBFA_003136 PF00501 AMP-binding enzyme ABBFA_003139 PF03466 LysR substrate binding domain ABBFA_003139 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_003140 PF00106 short chain dehydrogenase ABBFA_003141 PF06969 HemN C-terminal domain ABBFA_003141 PF04055 Radical SAM superfamily ABBFA_003143 PF01554 MatE ABBFA_003144 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_003144 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_003144 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_003145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_003145 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_003146 PF03109 ABC1 family ABBFA_003147 PF01197 Ribosomal protein L31 ABBFA_003149 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABBFA_003153 PF03884 DNA gyrase inhibitor YacG ABBFA_003154 PF00753 Metallo-beta-lactamase superfamily ABBFA_003155 PF00762 Ferrochelatase ABBFA_003157 PF01177 Asp/Glu/Hydantoin racemase ABBFA_003161 PF01206 Sulfurtransferase TusA ABBFA_003162 PF00571 CBS domain ABBFA_003162 PF03471 Transporter associated domain ABBFA_003163 PF00795 Carbon-nitrogen hydrolase ABBFA_003164 PF01588 Putative tRNA binding domain ABBFA_003166 PF07963 Prokaryotic N-terminal methylation motif ABBFA_003166 PF08334 Type II secretion system (T2SS), protein G ABBFA_003167 PF00482 Type II secretion system (T2SS), protein F ABBFA_003168 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABBFA_003168 PF18074 Primosomal protein N C-terminal domain ABBFA_003168 PF00270 DEAD/DEAH box helicase ABBFA_003168 PF17764 3′ DNA-binding domain (3′BD) ABBFA_003168 PF00271 Helicase conserved C-terminal domain ABBFA_003169 PF02254 TrkA-N domain ABBFA_003169 PF00999 Sodium/hydrogen exchanger family ABBFA_003170 PF01430 Hsp33 protein ABBFA_003172 PF00226 DnaJ domain ABBFA_003172 PF01556 DnaJ C terminal domain ABBFA_003174 PF01544 CorA-like Mg2+ transporter protein ABBFA_003175 PF01138 3' exoribonuclease family, domain 1 ABBFA_003175 PF00013 KH domain ABBFA_003175 PF03725 3' exoribonuclease family, domain 2 ABBFA_003175 PF00575 S1 RNA binding domain ABBFA_003175 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABBFA_003176 PF00312 Ribosomal protein S15 ABBFA_003178 PF13538 UvrD-like helicase C-terminal domain ABBFA_003179 PF13361 UvrD-like helicase C-terminal domain ABBFA_003179 PF00580 UvrD/REP helicase N-terminal domain ABBFA_003179 PF12705 PD-(D/E)XK nuclease superfamily ABBFA_003180 PF17946 RecC C-terminal domain ABBFA_003182 PF03976 Polyphosphate kinase 2 (PPK2) ABBFA_003184 PF01209 ubiE/COQ5 methyltransferase family ABBFA_003186 PF03109 ABC1 family ABBFA_003187 PF01494 FAD binding domain ABBFA_003188 PF01494 FAD binding domain ABBFA_003189 PF01502 Phosphoribosyl-AMP cyclohydrolase ABBFA_003192 PF00361 Proton-conducting membrane transporter ABBFA_003192 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ABBFA_003192 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABBFA_003192 PF13244 Domain of unknown function (DUF4040) ABBFA_003193 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABBFA_003194 PF00361 Proton-conducting membrane transporter ABBFA_003196 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABBFA_003198 PF02033 Ribosome-binding factor A ABBFA_003199 PF11987 Translation-initiation factor 2 ABBFA_003199 PF00009 Elongation factor Tu GTP binding domain ABBFA_003199 PF04760 Translation initiation factor IF-2, N-terminal region ABBFA_003199 PF08364 Bacterial translation initiation factor IF-2 associated region ABBFA_003200 PF00575 S1 RNA binding domain ABBFA_003200 PF08529 NusA N-terminal domain ABBFA_003200 PF13184 NusA-like KH domain ABBFA_003201 PF17384 RimP C-terminal SH3 domain ABBFA_003201 PF02576 RimP N-terminal domain ABBFA_003205 PF03840 Preprotein translocase SecG subunit ABBFA_003206 PF00121 Triosephosphate isomerase ABBFA_003207 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ABBFA_003207 PF00437 Type II/IV secretion system protein ABBFA_003208 PF00482 Type II secretion system (T2SS), protein F ABBFA_003209 PF00482 Type II secretion system (T2SS), protein F ABBFA_003210 PF06750 Bacterial Peptidase A24 N-terminal domain ABBFA_003210 PF01478 Type IV leader peptidase family ABBFA_003211 PF01121 Dephospho-CoA kinase ABBFA_003213 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABBFA_003213 PF00588 SpoU rRNA Methylase family ABBFA_003214 PF06865 Pyrimidine/purine nucleoside phosphorylase ABBFA_003216 PF02463 RecF/RecN/SMC N terminal domain ABBFA_003217 PF02622 Uncharacterized ACR, COG1678 ABBFA_003218 PF03652 Holliday junction resolvase ABBFA_003219 PF13533 Biotin-lipoyl like ABBFA_003223 PF02805 Metal binding domain of Ada ABBFA_003223 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABBFA_003223 PF12833 Helix-turn-helix domain ABBFA_003223 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABBFA_003224 PF01066 CDP-alcohol phosphatidyltransferase ABBFA_003226 PF08459 UvrC Helix-hairpin-helix N-terminal ABBFA_003226 PF02151 UvrB/uvrC motif ABBFA_003226 PF01541 GIY-YIG catalytic domain ABBFA_003230 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_003230 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_003230 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_003231 PF00108 Thiolase, N-terminal domain ABBFA_003231 PF02803 Thiolase, C-terminal domain ABBFA_003234 PF09278 MerR, DNA binding ABBFA_003234 PF00376 MerR family regulatory protein ABBFA_003236 PF01323 DSBA-like thioredoxin domain ABBFA_003239 PF00183 Hsp90 protein ABBFA_003239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_003242 PF03553 Na+/H+ antiporter family ABBFA_003242 PF13726 Na+-H+ antiporter family ABBFA_003247 PF04997 RNA polymerase Rpb1, domain 1 ABBFA_003247 PF00623 RNA polymerase Rpb1, domain 2 ABBFA_003247 PF04983 RNA polymerase Rpb1, domain 3 ABBFA_003247 PF05000 RNA polymerase Rpb1, domain 4 ABBFA_003247 PF04998 RNA polymerase Rpb1, domain 5 ABBFA_003248 PF04565 RNA polymerase Rpb2, domain 3 ABBFA_003248 PF04561 RNA polymerase Rpb2, domain 2 ABBFA_003248 PF00562 RNA polymerase Rpb2, domain 6 ABBFA_003248 PF10385 RNA polymerase beta subunit external 1 domain ABBFA_003248 PF04560 RNA polymerase Rpb2, domain 7 ABBFA_003248 PF04563 RNA polymerase beta subunit ABBFA_003249 PF16320 Ribosomal protein L7/L12 dimerisation domain ABBFA_003249 PF00542 Ribosomal protein L7/L12 C-terminal domain ABBFA_003250 PF00466 Ribosomal protein L10 ABBFA_003251 PF00687 Ribosomal protein L1p/L10e family ABBFA_003252 PF00298 Ribosomal protein L11, RNA binding domain ABBFA_003252 PF03946 Ribosomal protein L11, N-terminal domain ABBFA_003253 PF02357 Transcription termination factor nusG ABBFA_003253 PF00467 KOW motif ABBFA_003254 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABBFA_003256 PF03143 Elongation factor Tu C-terminal domain ABBFA_003256 PF00009 Elongation factor Tu GTP binding domain ABBFA_003256 PF03144 Elongation factor Tu domain 2 ABBFA_003261 PF04715 Anthranilate synthase component I, N terminal region ABBFA_003261 PF00425 chorismate binding enzyme ABBFA_003262 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_003263 PF00498 FHA domain ABBFA_003263 PF12401 Protein of unknown function (DUF2662) ABBFA_003264 PF00263 Bacterial type II and III secretion system protein ABBFA_003264 PF03958 Bacterial type II/III secretion system short domain ABBFA_003266 PF00816 H-NS histone family ABBFA_003271 PF03900 Porphobilinogen deaminase, C-terminal domain ABBFA_003271 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABBFA_003272 PF04397 LytTr DNA-binding domain ABBFA_003272 PF00072 Response regulator receiver domain ABBFA_003273 PF07694 5TMR of 5TMR-LYT ABBFA_003273 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_003273 PF06580 Histidine kinase ABBFA_003274 PF14698 Argininosuccinate lyase C-terminal ABBFA_003274 PF00206 Lyase ABBFA_003275 PF04362 Bacterial Fe(2+) trafficking ABBFA_003276 PF01895 PhoU domain ABBFA_003277 PF02321 Outer membrane efflux protein ABBFA_003278 PF00892 EamA-like transporter family ABBFA_003281 PF13667 ThiC-associated domain ABBFA_003281 PF01964 Radical SAM ThiC family ABBFA_003282 PF00293 NUDIX domain ABBFA_003283 PF00149 Calcineurin-like phosphoesterase ABBFA_003284 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABBFA_003285 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABBFA_003286 PF01098 Cell cycle protein ABBFA_003287 PF02875 Mur ligase family, glutamate ligase domain ABBFA_003287 PF08245 Mur ligase middle domain ABBFA_003289 PF02421 Ferrous iron transport protein B ABBFA_003289 PF07664 Ferrous iron transport protein B C terminus ABBFA_003289 PF07670 Nucleoside recognition ABBFA_003291 PF00589 Phage integrase family ABBFA_003291 PF02899 Phage integrase, N-terminal SAM-like domain ABBFA_003292 PF10411 Disulfide bond isomerase protein N-terminus ABBFA_003292 PF13098 Thioredoxin-like domain ABBFA_003293 PF01842 ACT domain ABBFA_003293 PF03447 Homoserine dehydrogenase, NAD binding domain ABBFA_003293 PF00742 Homoserine dehydrogenase ABBFA_003294 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_003295 PF00768 D-alanyl-D-alanine carboxypeptidase ABBFA_003296 PF00072 Response regulator receiver domain ABBFA_003296 PF00196 Bacterial regulatory proteins, luxR family ABBFA_003297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_003297 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_003298 PF00158 Sigma-54 interaction domain ABBFA_003298 PF00072 Response regulator receiver domain ABBFA_003298 PF02954 Bacterial regulatory protein, Fis family ABBFA_003299 PF00595 PDZ domain ABBFA_003299 PF03572 Peptidase family S41 ABBFA_003300 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABBFA_003300 PF01676 Metalloenzyme superfamily ABBFA_003301 PF03739 Lipopolysaccharide export system permease LptF/LptG ABBFA_003304 PF00883 Cytosol aminopeptidase family, catalytic domain ABBFA_003304 PF02789 Cytosol aminopeptidase family, N-terminal domain ABBFA_003308 PF00677 Lumazine binding domain ABBFA_003310 PF01872 RibD C-terminal domain ABBFA_003310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABBFA_003311 PF03477 ATP cone domain ABBFA_003312 PF00909 Ammonium Transporter Family ABBFA_003313 PF00543 Nitrogen regulatory protein P-II ABBFA_003315 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABBFA_003315 PF01078 Magnesium chelatase, subunit ChlI ABBFA_003316 PF00155 Aminotransferase class I and II ABBFA_003316 PF00392 Bacterial regulatory proteins, gntR family ABBFA_003318 PF00701 Dihydrodipicolinate synthetase family ABBFA_003321 PF03573 outer membrane porin, OprD family ABBFA_003322 PF00719 Inorganic pyrophosphatase ABBFA_003325 PF13193 AMP-binding enzyme C-terminal domain ABBFA_003325 PF00501 AMP-binding enzyme ABBFA_003326 PF00521 DNA gyrase/topoisomerase IV, subunit A ABBFA_003326 PF03989 DNA gyrase C-terminal domain, beta-propeller ABBFA_003327 PF07690 Major Facilitator Superfamily ABBFA_003328 PF03458 UPF0126 domain ABBFA_003329 PF02810 SEC-C motif ABBFA_003330 PF03741 Integral membrane protein TerC family ABBFA_003330 PF03471 Transporter associated domain ABBFA_003331 PF03641 Possible lysine decarboxylase ABBFA_003332 PF07690 Major Facilitator Superfamily ABBFA_003334 PF11799 impB/mucB/samB family C-terminal domain ABBFA_003334 PF11798 IMS family HHH motif ABBFA_003334 PF00817 impB/mucB/samB family ABBFA_003337 PF11842 Domain of unknown function (DUF3362) ABBFA_003337 PF04055 Radical SAM superfamily ABBFA_003337 PF08497 Radical SAM N-terminal ABBFA_003341 PF03358 NADPH-dependent FMN reductase ABBFA_003343 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_003349 PF00440 Bacterial regulatory proteins, tetR family ABBFA_003354 PF01327 Polypeptide deformylase ABBFA_003356 PF02481 DNA recombination-mediator protein A ABBFA_003356 PF17782 DprA winged helix domain ABBFA_003357 PF01300 Telomere recombination ABBFA_003358 PF00892 EamA-like transporter family ABBFA_003359 PF00440 Bacterial regulatory proteins, tetR family ABBFA_003360 PF07690 Major Facilitator Superfamily ABBFA_003362 PF00255 Glutathione peroxidase ABBFA_003364 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABBFA_003365 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABBFA_003365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABBFA_003366 PF00231 ATP synthase ABBFA_003367 PF00306 ATP synthase alpha/beta chain, C terminal domain ABBFA_003367 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABBFA_003367 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABBFA_003368 PF00213 ATP synthase delta (OSCP) subunit ABBFA_003369 PF00430 ATP synthase B/B' CF(0) ABBFA_003370 PF00137 ATP synthase subunit C ABBFA_003371 PF00119 ATP synthase A chain ABBFA_003375 PF00005 ABC transporter ABBFA_003376 PF00950 ABC 3 transport family ABBFA_003377 PF01810 LysE type translocator ABBFA_003378 PF04261 Dyp-type peroxidase family ABBFA_003379 PF00390 Malic enzyme, N-terminal domain ABBFA_003379 PF03949 Malic enzyme, NAD binding domain ABBFA_003380 PF00750 tRNA synthetases class I (R) ABBFA_003380 PF03485 Arginyl tRNA synthetase N terminal domain ABBFA_003380 PF05746 DALR anticodon binding domain ABBFA_003384 PF02678 Pirin ABBFA_003384 PF05726 Pirin C-terminal cupin domain ABBFA_003386 PF03551 Transcriptional regulator PadR-like family ABBFA_003387 PF13427 Domain of unknown function (DUF4111) ABBFA_003387 PF01909 Nucleotidyltransferase domain ABBFA_003388 PF00117 Glutamine amidotransferase class-I ABBFA_003388 PF00958 GMP synthase C terminal domain ABBFA_003388 PF02540 NAD synthase ABBFA_003389 PF04286 Protein of unknown function (DUF445) ABBFA_003390 PF07681 DoxX ABBFA_003391 PF09335 SNARE associated Golgi protein ABBFA_003394 PF13614 AAA domain ABBFA_003396 PF01722 BolA-like protein ABBFA_003399 PF01648 4'-phosphopantetheinyl transferase superfamily ABBFA_003400 PF12697 Alpha/beta hydrolase family ABBFA_003403 PF00501 AMP-binding enzyme ABBFA_003403 PF00668 Condensation domain ABBFA_003403 PF00550 Phosphopantetheine attachment site ABBFA_003403 PF00975 Thioesterase domain ABBFA_003403 PF13193 AMP-binding enzyme C-terminal domain ABBFA_003404 PF14765 Polyketide synthase dehydratase ABBFA_003404 PF16197 Ketoacyl-synthetase C-terminal extension ABBFA_003404 PF02801 Beta-ketoacyl synthase, C-terminal domain ABBFA_003404 PF08242 Methyltransferase domain ABBFA_003404 PF00550 Phosphopantetheine attachment site ABBFA_003404 PF00975 Thioesterase domain ABBFA_003404 PF00109 Beta-ketoacyl synthase, N-terminal domain ABBFA_003405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_003405 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_003405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_003406 PF00501 AMP-binding enzyme ABBFA_003407 PF03472 Autoinducer binding domain ABBFA_003407 PF00196 Bacterial regulatory proteins, luxR family ABBFA_003409 PF00765 Autoinducer synthase ABBFA_003410 PF07690 Major Facilitator Superfamily ABBFA_003410 PF00083 Sugar (and other) transporter ABBFA_003411 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_003412 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_003413 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_003413 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_003413 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_003414 PF13193 AMP-binding enzyme C-terminal domain ABBFA_003414 PF00501 AMP-binding enzyme ABBFA_003415 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABBFA_003415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABBFA_003416 PF00171 Aldehyde dehydrogenase family ABBFA_003418 PF00324 Amino acid permease ABBFA_003419 PF00324 Amino acid permease ABBFA_003420 PF01042 Endoribonuclease L-PSP ABBFA_003421 PF01168 Alanine racemase, N-terminal domain ABBFA_003421 PF00842 Alanine racemase, C-terminal domain ABBFA_003422 PF01266 FAD dependent oxidoreductase ABBFA_003423 PF01037 Lrp/AsnC ligand binding domain ABBFA_003425 PF07715 TonB-dependent Receptor Plug Domain ABBFA_003425 PF00593 TonB dependent receptor ABBFA_003428 PF00849 RNA pseudouridylate synthase ABBFA_003433 PF00293 NUDIX domain ABBFA_003437 PF00330 Aconitase family (aconitate hydratase) ABBFA_003437 PF00694 Aconitase C-terminal domain ABBFA_003438 PF00285 Citrate synthase, C-terminal domain ABBFA_003440 PF07729 FCD domain ABBFA_003440 PF00392 Bacterial regulatory proteins, gntR family ABBFA_003441 PF00155 Aminotransferase class I and II ABBFA_003442 PF09330 D-lactate dehydrogenase, membrane binding ABBFA_003442 PF01565 FAD binding domain ABBFA_003443 PF01070 FMN-dependent dehydrogenase ABBFA_003444 PF07729 FCD domain ABBFA_003444 PF00392 Bacterial regulatory proteins, gntR family ABBFA_003445 PF02652 L-lactate permease ABBFA_003446 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABBFA_003446 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABBFA_003446 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABBFA_003446 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABBFA_003447 PF00342 Phosphoglucose isomerase ABBFA_003448 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABBFA_003448 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABBFA_003448 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABBFA_003449 PF00483 Nucleotidyl transferase ABBFA_003450 PF02719 Polysaccharide biosynthesis protein ABBFA_003451 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABBFA_003452 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_003452 PF14602 Hexapeptide repeat of succinyl-transferase ABBFA_003452 PF17836 PglD N-terminal domain ABBFA_003453 PF13477 Glycosyl transferase 4-like ABBFA_003453 PF00534 Glycosyl transferases group 1 ABBFA_003454 PF01168 Alanine racemase, N-terminal domain ABBFA_003454 PF00842 Alanine racemase, C-terminal domain ABBFA_003454 PF01757 Acyltransferase family ABBFA_003457 PF01370 NAD dependent epimerase/dehydratase family ABBFA_003458 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABBFA_003458 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABBFA_003458 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABBFA_003459 PF02563 Polysaccharide biosynthesis/export protein ABBFA_003459 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ABBFA_003459 PF10531 SLBB domain ABBFA_003460 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABBFA_003461 PF13614 AAA domain ABBFA_003461 PF13807 G-rich domain on putative tyrosine kinase ABBFA_003461 PF02706 Chain length determinant protein ABBFA_003462 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_003462 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABBFA_003463 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABBFA_003463 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_003464 PF03023 Lipid II flippase MurJ ABBFA_003465 PF01510 N-acetylmuramoyl-L-alanine amidase ABBFA_003466 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABBFA_003466 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABBFA_003467 PF05506 Domain of unknown function (DUF756) ABBFA_003467 PF04185 Phosphoesterase family ABBFA_003469 PF01138 3' exoribonuclease family, domain 1 ABBFA_003469 PF03725 3' exoribonuclease family, domain 2 ABBFA_003470 PF00487 Fatty acid desaturase ABBFA_003471 PF00175 Oxidoreductase NAD-binding domain ABBFA_003472 PF00440 Bacterial regulatory proteins, tetR family ABBFA_003473 PF00440 Bacterial regulatory proteins, tetR family ABBFA_003473 PF08360 QacR-like protein, C-terminal region ABBFA_003474 PF01323 DSBA-like thioredoxin domain ABBFA_003476 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_003477 PF00106 short chain dehydrogenase ABBFA_003480 PF00583 Acetyltransferase (GNAT) family ABBFA_003480 PF00696 Amino acid kinase family ABBFA_003481 PF09084 NMT1/THI5 like ABBFA_003482 PF09084 NMT1/THI5 like ABBFA_003483 PF00296 Luciferase-like monooxygenase ABBFA_003484 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_003485 PF00005 ABC transporter ABBFA_003486 PF00440 Bacterial regulatory proteins, tetR family ABBFA_003486 PF08362 YcdC-like protein, C-terminal region ABBFA_003487 PF01048 Phosphorylase superfamily ABBFA_003489 PF01687 Riboflavin kinase ABBFA_003489 PF06574 FAD synthetase ABBFA_003490 PF00133 tRNA synthetases class I (I, L, M and V) ABBFA_003490 PF06827 Zinc finger found in FPG and IleRS ABBFA_003490 PF08264 Anticodon-binding domain of tRNA ABBFA_003491 PF01252 Signal peptidase (SPase) II ABBFA_003492 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_003498 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABBFA_003499 PF07859 alpha/beta hydrolase fold ABBFA_003503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_003503 PF03466 LysR substrate binding domain ABBFA_003504 PF01025 GrpE ABBFA_003505 PF00012 Hsp70 protein ABBFA_003509 PF13406 Transglycosylase SLT domain ABBFA_003510 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ABBFA_003510 PF02222 ATP-grasp domain ABBFA_003511 PF00731 AIR carboxylase ABBFA_003513 PF08245 Mur ligase middle domain ABBFA_003513 PF01225 Mur ligase family, catalytic domain ABBFA_003513 PF02875 Mur ligase family, glutamate ligase domain ABBFA_003515 PF01569 PAP2 superfamily ABBFA_003516 PF03741 Integral membrane protein TerC family ABBFA_003518 PF03738 Glutathionylspermidine synthase preATP-grasp ABBFA_003519 PF00355 Rieske [2Fe-2S] domain ABBFA_003520 PF01979 Amidohydrolase family ABBFA_003522 PF00156 Phosphoribosyl transferase domain ABBFA_003524 PF13098 Thioredoxin-like domain ABBFA_003524 PF10411 Disulfide bond isomerase protein N-terminus ABBFA_003525 PF16916 Dimerisation domain of Zinc Transporter ABBFA_003525 PF01545 Cation efflux family ABBFA_003526 PF02583 Metal-sensitive transcriptional repressor ABBFA_003527 PF12631 MnmE helical domain ABBFA_003527 PF10396 GTP-binding protein TrmE N-terminus ABBFA_003527 PF01926 50S ribosome-binding GTPase ABBFA_003528 PF02096 60Kd inner membrane protein ABBFA_003528 PF14849 YidC periplasmic domain ABBFA_003529 PF01809 Putative membrane protein insertion efficiency factor ABBFA_003530 PF00825 Ribonuclease P ABBFA_003531 PF00468 Ribosomal protein L34