ABBFA_000001 SM00382 ATPases associated with a variety of cellular activities ABBFA_000001 SM00760 Bacterial dnaA protein helix-turn-helix domain ABBFA_000002 SM00480 DNA polymerase III beta subunit ABBFA_000004 SM00387 Histidine kinase-like ATPases ABBFA_000004 SM00433 TopoisomeraseII ABBFA_000007 SM00382 ATPases associated with a variety of cellular activities ABBFA_000036 SM00271 DnaJ molecular chaperone homology domain ABBFA_000044 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_000045 SM00829 Enoylreductase ABBFA_000049 SM00478 endonuclease III ABBFA_000049 SM00525 ABBFA_000049 ABBFA_000055 SM00382 ATPases associated with a variety of cellular activities ABBFA_000060 SM01130 ABBFA_000060 ABBFA_000066 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_000072 SM00833 Cobalamin synthesis protein cobW C-terminal domain ABBFA_000074 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_000074 SM00866 ABBFA_000074 ABBFA_000086 SM00387 Histidine kinase-like ATPases ABBFA_000102 SM00450 Rhodanese Homology Domain ABBFA_000105 SM00387 Histidine kinase-like ATPases ABBFA_000105 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_000106 SM00448 cheY-homologous receiver domain ABBFA_000106 SM00862 Transcriptional regulatory protein, C terminal ABBFA_000117 SM00257 Lysin motif ABBFA_000124 SM00387 Histidine kinase-like ATPases ABBFA_000124 SM00433 TopoisomeraseII ABBFA_000149 SM00842 Cell division protein FtsA ABBFA_000150 SM00864 Tubulin/FtsZ family, GTPase domain ABBFA_000150 SM00865 Tubulin/FtsZ family, C-terminal domain ABBFA_000159 SM00849 Metallo-beta-lactamase superfamily ABBFA_000161 SM00116 Domain in cystathionine beta-synthase and other proteins. ABBFA_000161 SM01240 ABBFA_000161 ABBFA_000165 SM00937 ABBFA_000165 ABBFA_000166 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABBFA_000174 SM00344 helix_turn_helix ASNC type ABBFA_000177 SM00421 helix_turn_helix, Lux Regulon ABBFA_000177 SM00448 cheY-homologous receiver domain ABBFA_000179 SM00387 Histidine kinase-like ATPases ABBFA_000179 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_000179 SM00448 cheY-homologous receiver domain ABBFA_000185 SM00267 diguanylate cyclase ABBFA_000188 SM00829 Enoylreductase ABBFA_000197 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_000199 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_000227 SM00487 DEAD-like helicases superfamily ABBFA_000236 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_000237 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_000239 SM00344 helix_turn_helix ASNC type ABBFA_000249 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000257 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000262 SM00477 DNA/RNA non-specific endonuclease ABBFA_000262 SM00892 DNA/RNA non-specific endonuclease ABBFA_000267 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000271 SM00357 Cold shock protein domain ABBFA_000274 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_000276 SM00474 3'-5' exonuclease ABBFA_000285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABBFA_000285 SM00387 Histidine kinase-like ATPases ABBFA_000285 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_000286 SM00448 cheY-homologous receiver domain ABBFA_000286 SM00862 Transcriptional regulatory protein, C terminal ABBFA_000287 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_000287 SM00732 Likely ribonuclease with RNase H fold. ABBFA_000288 SM00947 Carbonic anhydrase ABBFA_000291 SM00382 ATPases associated with a variety of cellular activities ABBFA_000319 SM00842 Cell division protein FtsA ABBFA_000323 SM00965 Secretin and TonB N terminus short domain ABBFA_000338 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABBFA_000338 SM00954 Region found in RelA / SpoT proteins ABBFA_000339 SM01409 ABBFA_000339 ABBFA_000340 SM00072 Guanylate kinase homologues. ABBFA_000376 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABBFA_000397 SM00116 Domain in cystathionine beta-synthase and other proteins. ABBFA_000405 SM00861 Transketolase, pyrimidine binding domain ABBFA_000407 SM00487 DEAD-like helicases superfamily ABBFA_000407 SM00490 helicase superfamily c-terminal domain ABBFA_000409 SM00382 ATPases associated with a variety of cellular activities ABBFA_000418 SM00487 DEAD-like helicases superfamily ABBFA_000418 SM00490 helicase superfamily c-terminal domain ABBFA_000421 SM00563 Phosphate acyltransferases ABBFA_000431 SM01403 ABBFA_000431 ABBFA_000435 SM01382 ABBFA_000435 ABBFA_000435 SM01383 ABBFA_000435 ABBFA_000438 SM00322 K homology RNA-binding domain ABBFA_000442 SM01374 ABBFA_000442 ABBFA_000443 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ABBFA_000456 SM00363 S4 RNA-binding domain ABBFA_000456 SM01390 ABBFA_000456 ABBFA_000457 SM00662 RNA polymerases D ABBFA_000469 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_000469 SM00955 ABBFA_000469 ABBFA_000479 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000489 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_000495 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ABBFA_000511 SM00878 Biotin carboxylase C-terminal domain ABBFA_000523 SM00155 Phospholipase D. Active site motifs. ABBFA_000526 SM00267 diguanylate cyclase ABBFA_000538 SM00450 Rhodanese Homology Domain ABBFA_000543 SM00481 DNA polymerase alpha chain like domain ABBFA_000549 SM01323 ABBFA_000549 ABBFA_000555 SM00387 Histidine kinase-like ATPases ABBFA_000555 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_000578 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABBFA_000578 SM00387 Histidine kinase-like ATPases ABBFA_000578 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_000579 SM00448 cheY-homologous receiver domain ABBFA_000579 SM00862 Transcriptional regulatory protein, C terminal ABBFA_000591 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000597 SM00849 Metallo-beta-lactamase superfamily ABBFA_000599 SM00957 SecA DEAD-like domain ABBFA_000599 SM00958 SecA preprotein cross-linking domain ABBFA_000610 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000614 SM00564 beta-propeller repeat ABBFA_000627 SM00838 Elongation factor G C-terminus ABBFA_000631 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ABBFA_000631 SM01232 ABBFA_000631 ABBFA_000636 SM00671 Sel1-like repeats. ABBFA_000647 SM00448 cheY-homologous receiver domain ABBFA_000648 SM00448 cheY-homologous receiver domain ABBFA_000649 SM00260 Two component signalling adaptor domain ABBFA_000650 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ABBFA_000651 SM00073 Histidine Phosphotransfer domain ABBFA_000651 SM00260 Two component signalling adaptor domain ABBFA_000651 SM00387 Histidine kinase-like ATPases ABBFA_000651 SM00448 cheY-homologous receiver domain ABBFA_000651 SM01231 ABBFA_000651 ABBFA_000653 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_000682 SM00845 GatB domain ABBFA_000689 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_000701 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_000702 SM00829 Enoylreductase ABBFA_000711 SM00244 prohibitin homologues ABBFA_000714 SM00563 Phosphate acyltransferases ABBFA_000718 SM00448 cheY-homologous receiver domain ABBFA_000718 SM00862 Transcriptional regulatory protein, C terminal ABBFA_000719 SM00387 Histidine kinase-like ATPases ABBFA_000719 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_000727 SM00822 ABBFA_000727 ABBFA_000734 SM00014 Acid phosphatase homologues ABBFA_000755 SM00450 Rhodanese Homology Domain ABBFA_000763 SM00861 Transketolase, pyrimidine binding domain ABBFA_000767 SM00881 CoA binding domain ABBFA_000780 SM00854 Bacterial capsule synthesis protein PGA_cap ABBFA_000786 SM00851 MGS-like domain ABBFA_000786 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABBFA_000787 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ABBFA_000790 SM01103 ABBFA_000790 ABBFA_000792 SM00382 ATPases associated with a variety of cellular activities ABBFA_000811 SM00883 Chaperonin 10 Kd subunit ABBFA_000814 SM00849 Metallo-beta-lactamase superfamily ABBFA_000841 SM00978 ABBFA_000841 ABBFA_000843 SM00382 ATPases associated with a variety of cellular activities ABBFA_000852 SM00893 Electron transfer flavoprotein domain ABBFA_000853 SM00893 Electron transfer flavoprotein domain ABBFA_000854 SM00434 DNA Topoisomerase IV ABBFA_000870 SM00382 ATPases associated with a variety of cellular activities ABBFA_000871 SM00849 Metallo-beta-lactamase superfamily ABBFA_000892 SM00382 ATPases associated with a variety of cellular activities ABBFA_000893 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABBFA_000894 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABBFA_000895 SM01211 ABBFA_000895 ABBFA_000910 SM00382 ATPases associated with a variety of cellular activities ABBFA_000921 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABBFA_000923 SM00838 Elongation factor G C-terminus ABBFA_000926 SM00358 Double-stranded RNA binding motif ABBFA_000940 SM00267 diguanylate cyclase ABBFA_000942 SM00487 DEAD-like helicases superfamily ABBFA_000942 SM00490 helicase superfamily c-terminal domain ABBFA_000945 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABBFA_000949 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ABBFA_000968 SM01329 ABBFA_000968 ABBFA_000979 SM00880 ABBFA_000979 ABBFA_000979 SM01118 ABBFA_000979 ABBFA_000995 SM00487 DEAD-like helicases superfamily ABBFA_000995 SM00490 helicase superfamily c-terminal domain ABBFA_001006 SM00344 helix_turn_helix ASNC type ABBFA_001012 SM00382 ATPases associated with a variety of cellular activities ABBFA_001021 SM00936 Penicillin-binding protein 5, C-terminal domain ABBFA_001025 SM00257 Lysin motif ABBFA_001032 SM00052 Putative diguanylate phosphodiesterase ABBFA_001035 SM00841 Elongation factor P, C-terminal ABBFA_001035 SM01185 ABBFA_001035 ABBFA_001057 SM00382 ATPases associated with a variety of cellular activities ABBFA_001066 SM00382 ATPases associated with a variety of cellular activities ABBFA_001067 SM00382 ATPases associated with a variety of cellular activities ABBFA_001078 SM01092 CO dehydrogenase flavoprotein C-terminal domain ABBFA_001079 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABBFA_001081 SM00463 Small MutS-related domain ABBFA_001090 SM01230 ABBFA_001090 ABBFA_001101 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABBFA_001103 SM00919 Malic enzyme, NAD binding domain ABBFA_001103 SM01274 ABBFA_001103 ABBFA_001104 SM00052 Putative diguanylate phosphodiesterase ABBFA_001104 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ABBFA_001104 SM00091 PAS domain ABBFA_001104 SM00267 diguanylate cyclase ABBFA_001107 SM00996 S-adenosyl-L-homocysteine hydrolase ABBFA_001107 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABBFA_001111 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_001121 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001130 SM00382 ATPases associated with a variety of cellular activities ABBFA_001133 SM00479 ABBFA_001133 ABBFA_001141 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_001144 SM00382 ATPases associated with a variety of cellular activities ABBFA_001148 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_001153 SM00382 ATPases associated with a variety of cellular activities ABBFA_001155 SM00448 cheY-homologous receiver domain ABBFA_001155 SM00862 Transcriptional regulatory protein, C terminal ABBFA_001156 SM00387 Histidine kinase-like ATPases ABBFA_001156 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_001167 SM00830 Chorismate mutase type II ABBFA_001179 SM00357 Cold shock protein domain ABBFA_001180 SM00487 DEAD-like helicases superfamily ABBFA_001180 SM00490 helicase superfamily c-terminal domain ABBFA_001184 SM00855 Phosphoglycerate mutase family ABBFA_001217 SM01034 Sensors of blue-light using FAD ABBFA_001220 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001229 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_001229 SM00895 ABBFA_001229 ABBFA_001232 SM00972 Spore Coat Protein U domain ABBFA_001237 SM00972 Spore Coat Protein U domain ABBFA_001248 SM00095 Transthyretin ABBFA_001250 SM00448 cheY-homologous receiver domain ABBFA_001250 SM00862 Transcriptional regulatory protein, C terminal ABBFA_001251 SM00387 Histidine kinase-like ATPases ABBFA_001251 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_001259 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_001260 SM00448 cheY-homologous receiver domain ABBFA_001260 SM00862 Transcriptional regulatory protein, C terminal ABBFA_001272 SM00849 Metallo-beta-lactamase superfamily ABBFA_001274 SM00382 ATPases associated with a variety of cellular activities ABBFA_001274 SM00930 ABBFA_001274 ABBFA_001276 SM01209 ABBFA_001276 ABBFA_001276 SM01210 ABBFA_001276 ABBFA_001277 SM00798 AICARFT/IMPCHase bienzyme ABBFA_001277 SM00851 MGS-like domain ABBFA_001282 SM01228 ABBFA_001282 ABBFA_001287 SM00460 Transglutaminase/protease-like homologues ABBFA_001289 SM01005 Alanine racemase, C-terminal domain ABBFA_001312 SM00937 ABBFA_001312 ABBFA_001315 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_001316 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001317 SM00822 ABBFA_001317 ABBFA_001320 SM00903 Flavin reductase like domain ABBFA_001323 SM00905 Dihydroneopterin aldolase ABBFA_001328 SM00387 Histidine kinase-like ATPases ABBFA_001328 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_001329 SM00448 cheY-homologous receiver domain ABBFA_001329 SM00862 Transcriptional regulatory protein, C terminal ABBFA_001330 SM01230 ABBFA_001330 ABBFA_001346 SM00363 S4 RNA-binding domain ABBFA_001351 SM00853 MutL C terminal dimerisation domain ABBFA_001351 SM01340 ABBFA_001351 ABBFA_001366 SM00862 Transcriptional regulatory protein, C terminal ABBFA_001369 SM00382 ATPases associated with a variety of cellular activities ABBFA_001375 SM00972 Spore Coat Protein U domain ABBFA_001378 SM00972 Spore Coat Protein U domain ABBFA_001382 SM00830 Chorismate mutase type II ABBFA_001383 SM00344 helix_turn_helix ASNC type ABBFA_001402 SM00382 ATPases associated with a variety of cellular activities ABBFA_001407 SM00831 Cation transporter/ATPase, N-terminus ABBFA_001410 SM00344 helix_turn_helix ASNC type ABBFA_001415 SM00822 ABBFA_001415 ABBFA_001420 SM00382 ATPases associated with a variety of cellular activities ABBFA_001425 SM00226 Low molecular weight phosphatase family ABBFA_001433 SM01236 ABBFA_001433 ABBFA_001436 SM00878 Biotin carboxylase C-terminal domain ABBFA_001443 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_001445 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_001446 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_001448 SM00852 Probable molybdopterin binding domain ABBFA_001449 SM00852 Probable molybdopterin binding domain ABBFA_001451 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_001468 SM00382 ATPases associated with a variety of cellular activities ABBFA_001468 SM00448 cheY-homologous receiver domain ABBFA_001469 SM00091 PAS domain ABBFA_001469 SM00387 Histidine kinase-like ATPases ABBFA_001469 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_001471 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_001476 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABBFA_001478 SM00935 Outer membrane protein (OmpH-like) ABBFA_001484 SM00382 ATPases associated with a variety of cellular activities ABBFA_001485 SM00363 S4 RNA-binding domain ABBFA_001491 SM00344 helix_turn_helix ASNC type ABBFA_001500 SM00052 Putative diguanylate phosphodiesterase ABBFA_001500 SM00091 PAS domain ABBFA_001500 SM00267 diguanylate cyclase ABBFA_001502 SM00347 helix_turn_helix multiple antibiotic resistance protein ABBFA_001516 SM00116 Domain in cystathionine beta-synthase and other proteins. ABBFA_001522 SM00382 ATPases associated with a variety of cellular activities ABBFA_001522 SM00962 SRP54-type protein, GTPase domain ABBFA_001522 SM00963 SRP54-type protein, helical bundle domain ABBFA_001532 SM01264 ABBFA_001532 ABBFA_001541 SM00859 Semialdehyde dehydrogenase, NAD binding domain ABBFA_001544 SM00382 ATPases associated with a variety of cellular activities ABBFA_001544 SM01086 C-terminal, D2-small domain, of ClpB protein ABBFA_001557 SM01192 ABBFA_001557 ABBFA_001557 SM01193 ABBFA_001557 ABBFA_001561 SM00882 Coenzyme A transferase ABBFA_001562 SM00882 Coenzyme A transferase ABBFA_001564 SM00998 Adenylosuccinate lyase C-terminus ABBFA_001571 SM00710 Parallel beta-helix repeats ABBFA_001573 SM00564 beta-propeller repeat ABBFA_001577 SM00849 Metallo-beta-lactamase superfamily ABBFA_001578 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_001582 SM00855 Phosphoglycerate mutase family ABBFA_001587 SM00347 helix_turn_helix multiple antibiotic resistance protein ABBFA_001596 SM00903 Flavin reductase like domain ABBFA_001597 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001605 SM00882 Coenzyme A transferase ABBFA_001606 SM00882 Coenzyme A transferase ABBFA_001610 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ABBFA_001614 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_001624 SM00422 helix_turn_helix, mercury resistance ABBFA_001630 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001649 SM00860 SMI1 / KNR4 family ABBFA_001656 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_001656 SM00866 ABBFA_001656 ABBFA_001674 SM01400 ABBFA_001674 ABBFA_001679 SM00421 helix_turn_helix, Lux Regulon ABBFA_001691 SM00487 DEAD-like helicases superfamily ABBFA_001691 SM00490 helicase superfamily c-terminal domain ABBFA_001700 SM00822 ABBFA_001700 ABBFA_001701 SM00822 ABBFA_001701 ABBFA_001703 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABBFA_001705 SM00387 Histidine kinase-like ATPases ABBFA_001705 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_001706 SM00448 cheY-homologous receiver domain ABBFA_001706 SM00862 Transcriptional regulatory protein, C terminal ABBFA_001721 SM00829 Enoylreductase ABBFA_001726 SM00155 Phospholipase D. Active site motifs. ABBFA_001731 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_001742 SM00382 ATPases associated with a variety of cellular activities ABBFA_001749 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001751 SM00903 Flavin reductase like domain ABBFA_001756 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001761 SM00882 Coenzyme A transferase ABBFA_001762 SM00882 Coenzyme A transferase ABBFA_001773 SM00567 E-Z type HEAT repeats ABBFA_001774 SM00382 ATPases associated with a variety of cellular activities ABBFA_001779 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_001779 SM00866 ABBFA_001779 ABBFA_001783 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001788 SM00849 Metallo-beta-lactamase superfamily ABBFA_001789 SM00382 ATPases associated with a variety of cellular activities ABBFA_001791 SM00829 Enoylreductase ABBFA_001795 SM00861 Transketolase, pyrimidine binding domain ABBFA_001797 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_001800 SM00267 diguanylate cyclase ABBFA_001805 SM00382 ATPases associated with a variety of cellular activities ABBFA_001811 SM00341 Helicase and RNase D C-terminal ABBFA_001811 SM00474 3'-5' exonuclease ABBFA_001812 SM00493 ABBFA_001812 ABBFA_001822 SM01324 ABBFA_001822 ABBFA_001836 SM00855 Phosphoglycerate mutase family ABBFA_001841 SM01006 Siderophore biosynthesis protein domain ABBFA_001859 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001861 SM00411 bacterial (prokaryotic) histone like domain ABBFA_001868 SM00271 DnaJ molecular chaperone homology domain ABBFA_001871 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain ABBFA_001873 SM00487 DEAD-like helicases superfamily ABBFA_001873 SM00490 helicase superfamily c-terminal domain ABBFA_001873 SM00982 ABBFA_001873 ABBFA_001873 SM01058 CarD-like/TRCF domain ABBFA_001884 SM00382 ATPases associated with a variety of cellular activities ABBFA_001898 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001901 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ABBFA_001903 SM00411 bacterial (prokaryotic) histone like domain ABBFA_001904 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_001909 SM00986 Uracil DNA glycosylase superfamily ABBFA_001909 SM00987 UreE urease accessory protein, C-terminal domain ABBFA_001921 SM00382 ATPases associated with a variety of cellular activities ABBFA_001924 SM00470 ParB-like nuclease domain ABBFA_001936 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ABBFA_001938 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABBFA_001942 SM00382 ATPases associated with a variety of cellular activities ABBFA_001944 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_001948 SM00344 helix_turn_helix ASNC type ABBFA_001955 SM00867 YceI-like domain ABBFA_001957 SM00861 Transketolase, pyrimidine binding domain ABBFA_001964 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_001969 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_001969 SM00876 Biotin and Thiamin Synthesis associated domain ABBFA_001986 SM01236 ABBFA_001986 ABBFA_001988 SM00563 Phosphate acyltransferases ABBFA_001990 SM00344 helix_turn_helix ASNC type ABBFA_001992 SM00382 ATPases associated with a variety of cellular activities ABBFA_001995 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_002002 SM00382 ATPases associated with a variety of cellular activities ABBFA_002002 SM00930 ABBFA_002002 ABBFA_002006 SM00100 Cyclic nucleotide-monophosphate binding domain ABBFA_002006 SM00419 helix_turn_helix, cAMP Regulatory protein ABBFA_002013 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ABBFA_002016 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_002021 SM00870 ABBFA_002021 ABBFA_002022 SM00481 DNA polymerase alpha chain like domain ABBFA_002033 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ABBFA_002039 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002039 SM00895 ABBFA_002039 ABBFA_002044 SM00382 ATPases associated with a variety of cellular activities ABBFA_002045 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_002055 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002060 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ABBFA_002071 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002078 SM00822 ABBFA_002078 ABBFA_002079 SM00450 Rhodanese Homology Domain ABBFA_002086 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_002087 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_002088 SM00382 ATPases associated with a variety of cellular activities ABBFA_002092 SM00421 helix_turn_helix, Lux Regulon ABBFA_002092 SM00448 cheY-homologous receiver domain ABBFA_002093 SM00387 Histidine kinase-like ATPases ABBFA_002093 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_002093 SM00448 cheY-homologous receiver domain ABBFA_002095 SM00344 helix_turn_helix ASNC type ABBFA_002099 SM00384 DNA binding domain with preference for A/T rich regions ABBFA_002102 SM01060 ABBFA_002102 ABBFA_002103 SM01236 ABBFA_002103 ABBFA_002121 SM00878 Biotin carboxylase C-terminal domain ABBFA_002130 SM00882 Coenzyme A transferase ABBFA_002131 SM00882 Coenzyme A transferase ABBFA_002138 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_002142 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_002150 SM00382 ATPases associated with a variety of cellular activities ABBFA_002152 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002152 SM00866 ABBFA_002152 ABBFA_002154 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_002164 SM00903 Flavin reductase like domain ABBFA_002167 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002167 SM00895 ABBFA_002167 ABBFA_002170 SM01060 ABBFA_002170 ABBFA_002179 SM00357 Cold shock protein domain ABBFA_002207 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_002211 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002211 SM00895 ABBFA_002211 ABBFA_002213 SM01130 ABBFA_002213 ABBFA_002215 SM00422 helix_turn_helix, mercury resistance ABBFA_002221 SM00248 ankyrin repeats ABBFA_002228 SM00382 ATPases associated with a variety of cellular activities ABBFA_002228 SM01086 C-terminal, D2-small domain, of ClpB protein ABBFA_002244 SM00382 ATPases associated with a variety of cellular activities ABBFA_002251 SM00796 Allophanate hydrolase subunit 1 ABBFA_002251 SM00797 Allophanate hydrolase subunit 2 ABBFA_002251 SM00878 Biotin carboxylase C-terminal domain ABBFA_002254 SM00829 Enoylreductase ABBFA_002260 SM00671 Sel1-like repeats. ABBFA_002262 SM00878 Biotin carboxylase C-terminal domain ABBFA_002263 SM00796 Allophanate hydrolase subunit 1 ABBFA_002263 SM00797 Allophanate hydrolase subunit 2 ABBFA_002289 SM00052 Putative diguanylate phosphodiesterase ABBFA_002292 SM00344 helix_turn_helix ASNC type ABBFA_002293 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ABBFA_002293 SM00534 ATPase domain of DNA mismatch repair MUTS family ABBFA_002302 SM00382 ATPases associated with a variety of cellular activities ABBFA_002304 SM00382 ATPases associated with a variety of cellular activities ABBFA_002308 SM00116 Domain in cystathionine beta-synthase and other proteins. ABBFA_002309 SM00840 ABBFA_002309 ABBFA_002319 SM00710 Parallel beta-helix repeats ABBFA_002320 SM00060 Fibronectin type 3 domain ABBFA_002346 SM00357 Cold shock protein domain ABBFA_002350 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_002360 SM00422 helix_turn_helix, mercury resistance ABBFA_002372 SM00382 ATPases associated with a variety of cellular activities ABBFA_002372 SM00487 DEAD-like helicases superfamily ABBFA_002372 SM00490 helicase superfamily c-terminal domain ABBFA_002372 SM00847 Helicase associated domain (HA2) Add an annotation ABBFA_002388 SM00981 ABBFA_002388 ABBFA_002391 SM00382 ATPases associated with a variety of cellular activities ABBFA_002391 SM01086 C-terminal, D2-small domain, of ClpB protein ABBFA_002395 SM00100 Cyclic nucleotide-monophosphate binding domain ABBFA_002395 SM00419 helix_turn_helix, cAMP Regulatory protein ABBFA_002399 SM00788 Adenylosuccinate synthetase ABBFA_002402 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABBFA_002403 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ABBFA_002421 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_002430 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002430 SM00895 ABBFA_002430 ABBFA_002431 SM00347 helix_turn_helix multiple antibiotic resistance protein ABBFA_002441 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002441 SM00895 ABBFA_002441 ABBFA_002443 SM01130 ABBFA_002443 ABBFA_002445 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ABBFA_002447 SM00858 ABBFA_002447 ABBFA_002449 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_002456 SM00344 helix_turn_helix ASNC type ABBFA_002459 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002459 SM00895 ABBFA_002459 ABBFA_002477 SM00267 diguanylate cyclase ABBFA_002479 SM00479 ABBFA_002479 ABBFA_002489 SM00382 ATPases associated with a variety of cellular activities ABBFA_002493 SM00257 Lysin motif ABBFA_002494 SM00479 ABBFA_002494 ABBFA_002505 SM00422 helix_turn_helix, mercury resistance ABBFA_002511 SM01011 Aminopeptidase P, N-terminal domain ABBFA_002517 SM00357 Cold shock protein domain ABBFA_002564 SM00530 Helix-turn-helix XRE-family like proteins ABBFA_002565 SM00382 ATPases associated with a variety of cellular activities ABBFA_002579 SM00382 ATPases associated with a variety of cellular activities ABBFA_002579 SM00464 Found in ATP-dependent protease La (LON) ABBFA_002583 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABBFA_002594 SM00988 UreE urease accessory protein, N-terminal domain ABBFA_002604 SM01091 Transporter associated domain ABBFA_002624 SM00382 ATPases associated with a variety of cellular activities ABBFA_002626 SM00947 Carbonic anhydrase ABBFA_002639 SM01018 B12 binding domain ABBFA_002640 SM00861 Transketolase, pyrimidine binding domain ABBFA_002643 SM00822 ABBFA_002643 ABBFA_002648 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_002666 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_002674 SM01322 ABBFA_002674 ABBFA_002693 SM01130 ABBFA_002693 ABBFA_002709 SM01004 Delta-aminolevulinic acid dehydratase ABBFA_002717 SM00382 ATPases associated with a variety of cellular activities ABBFA_002731 SM00563 Phosphate acyltransferases ABBFA_002738 SM00843 ABBFA_002738 ABBFA_002747 SM00838 Elongation factor G C-terminus ABBFA_002747 SM00889 Elongation factor G, domain IV ABBFA_002751 SM00825 Beta-ketoacyl synthase ABBFA_002763 SM01329 ABBFA_002763 ABBFA_002772 SM00363 S4 RNA-binding domain ABBFA_002774 SM00400 zinc finger ABBFA_002774 SM00493 ABBFA_002774 ABBFA_002776 SM00028 Tetratricopeptide repeats ABBFA_002783 SM01400 ABBFA_002783 ABBFA_002792 SM00257 Lysin motif ABBFA_002794 SM00822 ABBFA_002794 ABBFA_002795 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ABBFA_002802 SM00363 S4 RNA-binding domain ABBFA_002812 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABBFA_002812 SM00292 breast cancer carboxy-terminal domain ABBFA_002812 SM00532 Ligase N family ABBFA_002813 SM00771 ZipA, C-terminal domain (FtsZ-binding) ABBFA_002815 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_002819 SM00382 ATPases associated with a variety of cellular activities ABBFA_002819 SM00962 SRP54-type protein, GTPase domain ABBFA_002819 SM00963 SRP54-type protein, helical bundle domain ABBFA_002848 SM00357 Cold shock protein domain ABBFA_002857 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_002857 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABBFA_002858 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABBFA_002863 SM00267 diguanylate cyclase ABBFA_002865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ABBFA_002865 SM00387 Histidine kinase-like ATPases ABBFA_002865 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_002866 SM00448 cheY-homologous receiver domain ABBFA_002866 SM00862 Transcriptional regulatory protein, C terminal ABBFA_002878 SM00903 Flavin reductase like domain ABBFA_002885 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_002939 SM00331 Sigma factor PP2C-like phosphatases ABBFA_002943 SM00347 helix_turn_helix multiple antibiotic resistance protein ABBFA_002945 SM00382 ATPases associated with a variety of cellular activities ABBFA_002949 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ABBFA_002949 SM00474 3'-5' exonuclease ABBFA_002949 SM00475 5'-3' exonuclease ABBFA_002949 SM00482 DNA polymerase A domain ABBFA_002952 SM00977 TilS substrate C-terminal domain ABBFA_002956 SM00357 Cold shock protein domain ABBFA_002956 SM00382 ATPases associated with a variety of cellular activities ABBFA_002956 SM00959 Rho termination factor, N-terminal domain ABBFA_002958 SM00411 bacterial (prokaryotic) histone like domain ABBFA_002959 SM00873 B3/4 domain ABBFA_002959 SM00874 tRNA synthetase B5 domain ABBFA_002959 SM00896 Ferredoxin-fold anticodon binding domain ABBFA_002969 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ABBFA_002978 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABBFA_002981 SM00954 Region found in RelA / SpoT proteins ABBFA_002985 SM00073 Histidine Phosphotransfer domain ABBFA_002985 SM00387 Histidine kinase-like ATPases ABBFA_002985 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_002985 SM00448 cheY-homologous receiver domain ABBFA_002993 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ABBFA_002993 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ABBFA_003007 SM01236 ABBFA_003007 ABBFA_003010 SM00052 Putative diguanylate phosphodiesterase ABBFA_003010 SM00267 diguanylate cyclase ABBFA_003019 SM00382 ATPases associated with a variety of cellular activities ABBFA_003023 SM00479 ABBFA_003023 ABBFA_003025 SM00450 Rhodanese Homology Domain ABBFA_003030 SM00564 beta-propeller repeat ABBFA_003035 SM00028 Tetratricopeptide repeats ABBFA_003037 SM00562 ABBFA_003037 ABBFA_003039 SM00014 Acid phosphatase homologues ABBFA_003041 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABBFA_003041 SM00245 tail specific protease ABBFA_003056 SM00382 ATPases associated with a variety of cellular activities ABBFA_003056 SM00994 ClpX C4-type zinc finger ABBFA_003056 SM01086 C-terminal, D2-small domain, of ClpB protein ABBFA_003060 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ABBFA_003061 SM00917 LeuA allosteric (dimerisation) domain ABBFA_003064 SM00671 Sel1-like repeats. ABBFA_003092 SM00360 RNA recognition motif ABBFA_003096 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ABBFA_003096 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ABBFA_003096 SM00493 ABBFA_003096 ABBFA_003099 SM00829 Enoylreductase ABBFA_003101 SM00382 ATPases associated with a variety of cellular activities ABBFA_003107 SM00859 Semialdehyde dehydrogenase, NAD binding domain ABBFA_003110 SM00870 ABBFA_003110 ABBFA_003112 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_003113 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_003116 SM01329 ABBFA_003116 ABBFA_003124 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ABBFA_003132 SM00363 S4 RNA-binding domain ABBFA_003135 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_003141 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_003154 SM00849 Metallo-beta-lactamase superfamily ABBFA_003162 SM00116 Domain in cystathionine beta-synthase and other proteins. ABBFA_003162 SM01091 Transporter associated domain ABBFA_003168 SM00487 DEAD-like helicases superfamily ABBFA_003168 SM00490 helicase superfamily c-terminal domain ABBFA_003172 SM00271 DnaJ molecular chaperone homology domain ABBFA_003175 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_003175 SM00322 K homology RNA-binding domain ABBFA_003176 SM01387 ABBFA_003176 ABBFA_003178 SM00382 ATPases associated with a variety of cellular activities ABBFA_003200 SM00316 Ribosomal protein S1-like RNA-binding domain ABBFA_003213 SM00967 RNA 2'-O ribose methyltransferase substrate binding ABBFA_003215 SM00028 Tetratricopeptide repeats ABBFA_003218 SM00732 Likely ribonuclease with RNase H fold. ABBFA_003221 SM00346 helix_turn_helix isocitrate lyase regulation ABBFA_003223 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_003226 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ABBFA_003226 SM00465 GIY-YIG type nucleases (URI domain) ABBFA_003234 SM00422 helix_turn_helix, mercury resistance ABBFA_003239 SM00387 Histidine kinase-like ATPases ABBFA_003247 SM00663 RNA polymerase I subunit A N-terminus ABBFA_003252 SM00649 Ribosomal protein L11/L12 ABBFA_003253 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ABBFA_003253 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ABBFA_003263 SM00240 Forkhead associated domain ABBFA_003265 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ABBFA_003266 SM00528 Domain in histone-like proteins of HNS family ABBFA_003272 SM00448 cheY-homologous receiver domain ABBFA_003272 SM00850 LytTr DNA-binding domain ABBFA_003290 SM00899 ABBFA_003290 ABBFA_003296 SM00421 helix_turn_helix, Lux Regulon ABBFA_003296 SM00448 cheY-homologous receiver domain ABBFA_003297 SM00387 Histidine kinase-like ATPases ABBFA_003297 SM00388 His Kinase A (phosphoacceptor) domain ABBFA_003298 SM00382 ATPases associated with a variety of cellular activities ABBFA_003298 SM00448 cheY-homologous receiver domain ABBFA_003299 SM00245 tail specific protease ABBFA_003313 SM00938 Nitrogen regulatory protein P-II ABBFA_003315 SM00382 ATPases associated with a variety of cellular activities ABBFA_003316 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_003317 SM01007 Class II Aldolase and Adducin N-terminal domain ABBFA_003318 SM01130 ABBFA_003318 ABBFA_003326 SM00434 DNA Topoisomerase IV ABBFA_003330 SM01091 Transporter associated domain ABBFA_003333 SM00641 Glycosyl hydrolases family 25 ABBFA_003337 SM00729 Elongator protein 3, MiaB family, Radical SAM ABBFA_003339 SM00422 helix_turn_helix, mercury resistance ABBFA_003361 SM00342 helix_turn_helix, arabinose operon control protein ABBFA_003365 SM00382 ATPases associated with a variety of cellular activities ABBFA_003375 SM00382 ATPases associated with a variety of cellular activities ABBFA_003379 SM00919 Malic enzyme, NAD binding domain ABBFA_003379 SM01274 ABBFA_003379 ABBFA_003380 SM00836 DALR anticodon binding domain ABBFA_003380 SM01016 Arginyl tRNA synthetase N terminal dom ABBFA_003403 SM00823 Phosphopantetheine attachment site ABBFA_003403 SM00824 Thioesterase ABBFA_003404 SM00823 Phosphopantetheine attachment site ABBFA_003404 SM01294 ABBFA_003404 ABBFA_003407 SM00421 helix_turn_helix, Lux Regulon ABBFA_003421 SM01005 Alanine racemase, C-terminal domain ABBFA_003423 SM00344 helix_turn_helix ASNC type ABBFA_003440 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_003440 SM00895 ABBFA_003440 ABBFA_003444 SM00345 helix_turn_helix gluconate operon transcriptional repressor ABBFA_003444 SM00895 ABBFA_003444 ABBFA_003448 SM00984 UDP binding domain ABBFA_003458 SM00984 UDP binding domain ABBFA_003460 SM00226 Low molecular weight phosphatase family ABBFA_003465 SM00644 ABBFA_003465 ABBFA_003481 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_003482 SM00062 Bacterial periplasmic substrate-binding proteins ABBFA_003485 SM00382 ATPases associated with a variety of cellular activities ABBFA_003489 SM00904 Riboflavin kinase ABBFA_003494 SM00248 ankyrin repeats ABBFA_003502 SM00849 Metallo-beta-lactamase superfamily ABBFA_003506 SM00235 Zinc-dependent metalloprotease ABBFA_003507 SM00235 Zinc-dependent metalloprotease ABBFA_003511 SM01001 AIR carboxylase ABBFA_003529 SM01234 ABBFA_003529