locus-tag class description CTY05_00001 PF08299 Bacterial dnaA protein helix-turn-helix CTY05_00001 PF11638 DnaA N-terminal domain CTY05_00001 PF00308 Bacterial dnaA protein CTY05_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain CTY05_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain CTY05_00002 PF02767 DNA polymerase III beta subunit, central domain CTY05_00003 PF02463 RecF/RecN/SMC N terminal domain CTY05_00004 PF00204 DNA gyrase B CTY05_00004 PF00986 DNA gyrase B subunit, carboxyl terminus CTY05_00004 PF18053 DNA gyrase B subunit insert domain CTY05_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00004 PF01751 Toprim domain CTY05_00006 PF09335 SNARE associated Golgi protein CTY05_00007 PF12848 ABC transporter CTY05_00007 PF00005 ABC transporter CTY05_00011 PF01521 Iron-sulphur cluster biosynthesis CTY05_00012 PF00561 alpha/beta hydrolase fold CTY05_00013 PF03702 Anhydro-N-acetylmuramic acid kinase CTY05_00014 PF00579 tRNA synthetases class I (W and Y) CTY05_00019 PF00209 Sodium:neurotransmitter symporter family CTY05_00021 PF01189 16S rRNA methyltransferase RsmB/F CTY05_00021 PF01029 NusB family CTY05_00022 PF00551 Formyl transferase CTY05_00022 PF02911 Formyl transferase, C-terminal domain CTY05_00023 PF00920 Dehydratase family CTY05_00026 PF03466 LysR substrate binding domain CTY05_00026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00027 PF00860 Permease family CTY05_00028 PF00311 Phosphoenolpyruvate carboxylase CTY05_00029 PF00440 Bacterial regulatory proteins, tetR family CTY05_00029 PF08361 MAATS-type transcriptional repressor, C-terminal region CTY05_00030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTY05_00031 PF00873 AcrB/AcrD/AcrF family CTY05_00033 PF00684 DnaJ central domain CTY05_00033 PF01556 DnaJ C terminal domain CTY05_00033 PF00226 DnaJ domain CTY05_00035 PF05173 Dihydrodipicolinate reductase, C-terminus CTY05_00035 PF01113 Dihydrodipicolinate reductase, N-terminus CTY05_00037 PF07690 Major Facilitator Superfamily CTY05_00038 PF00248 Aldo/keto reductase family CTY05_00039 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00039 PF03466 LysR substrate binding domain CTY05_00041 PF00155 Aminotransferase class I and II CTY05_00041 PF00392 Bacterial regulatory proteins, gntR family CTY05_00042 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_00042 PF00107 Zinc-binding dehydrogenase CTY05_00043 PF03352 Methyladenine glycosylase CTY05_00046 PF10576 Iron-sulfur binding domain of endonuclease III CTY05_00046 PF14815 NUDIX domain CTY05_00046 PF00633 Helix-hairpin-helix motif CTY05_00046 PF00730 HhH-GPD superfamily base excision DNA repair protein CTY05_00049 PF07043 Protein of unknown function (DUF1328) CTY05_00050 PF03692 Putative zinc- or iron-chelating domain CTY05_00051 PF07995 Glucose / Sorbosone dehydrogenase CTY05_00052 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_00052 PF16193 AAA C-terminal domain CTY05_00052 PF12002 MgsA AAA+ ATPase C terminal CTY05_00053 PF01226 Formate/nitrite transporter CTY05_00055 PF01259 SAICAR synthetase CTY05_00057 PF00701 Dihydrodipicolinate synthetase family CTY05_00058 PF00857 Isochorismatase family CTY05_00059 PF01758 Sodium Bile acid symporter family CTY05_00060 PF01554 MatE CTY05_00061 PF04463 Protein of unknown function (DUF523) CTY05_00062 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTY05_00064 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTY05_00065 PF14497 Glutathione S-transferase, C-terminal domain CTY05_00065 PF02798 Glutathione S-transferase, N-terminal domain CTY05_00067 PF00324 Amino acid permease CTY05_00069 PF07683 Cobalamin synthesis protein cobW C-terminal domain CTY05_00069 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTY05_00071 PF00392 Bacterial regulatory proteins, gntR family CTY05_00071 PF07702 UTRA domain CTY05_00072 PF05962 HutD CTY05_00073 PF17392 Urocanase C-terminal domain CTY05_00073 PF01175 Urocanase Rossmann-like domain CTY05_00073 PF17391 Urocanase N-terminal domain CTY05_00074 PF00221 Aromatic amino acid lyase CTY05_00075 PF00324 Amino acid permease CTY05_00076 PF01979 Amidohydrolase family CTY05_00077 PF00491 Arginase family CTY05_00080 PF01177 Asp/Glu/Hydantoin racemase CTY05_00082 PF00145 C-5 cytosine-specific DNA methylase CTY05_00083 PF08676 MutL C terminal dimerisation domain CTY05_00083 PF01119 DNA mismatch repair protein, C-terminal domain CTY05_00085 PF01380 SIS domain CTY05_00086 PF12804 MobA-like NTP transferase domain CTY05_00086 PF14602 Hexapeptide repeat of succinyl-transferase CTY05_00086 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_00087 PF04608 Phosphatidylglycerophosphatase A CTY05_00088 PF02769 AIR synthase related protein, C-terminal domain CTY05_00088 PF00586 AIR synthase related protein, N-terminal domain CTY05_00089 PF01029 NusB family CTY05_00090 PF00885 6,7-dimethyl-8-ribityllumazine synthase CTY05_00091 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CTY05_00091 PF00925 GTP cyclohydrolase II CTY05_00096 PF02580 D-Tyr-tRNA(Tyr) deacylase CTY05_00097 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CTY05_00097 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CTY05_00098 PF00581 Rhodanese-like domain CTY05_00099 PF02666 Phosphatidylserine decarboxylase CTY05_00101 PF11808 Phosphate regulon sensor protein PhoR CTY05_00101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00101 PF00989 PAS fold CTY05_00101 PF00512 His Kinase A (phospho-acceptor) domain CTY05_00102 PF00072 Response regulator receiver domain CTY05_00102 PF00486 Transcriptional regulatory protein, C terminal CTY05_00104 PF00106 short chain dehydrogenase CTY05_00105 PF01554 MatE CTY05_00106 PF00155 Aminotransferase class I and II CTY05_00107 PF04286 Protein of unknown function (DUF445) CTY05_00110 PF04262 Glutamate-cysteine ligase CTY05_00111 PF02600 Disulfide bond formation protein DsbB CTY05_00112 PF04717 Type VI secretion system, phage-baseplate injector CTY05_00113 PF01510 N-acetylmuramoyl-L-alanine amidase CTY05_00113 PF01476 LysM domain CTY05_00113 PF01471 Putative peptidoglycan binding domain CTY05_00119 PF05728 Uncharacterised protein family (UPF0227) CTY05_00120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00120 PF00986 DNA gyrase B subunit, carboxyl terminus CTY05_00120 PF01751 Toprim domain CTY05_00120 PF00204 DNA gyrase B CTY05_00121 PF04115 Ureidoglycolate lyase CTY05_00122 PF03561 Allantoicase repeat CTY05_00123 PF01494 FAD binding domain CTY05_00125 PF00860 Permease family CTY05_00126 PF00576 HIUase/Transthyretin family CTY05_00132 PF11412 Disulphide bond corrector protein DsbC CTY05_00132 PF02683 Cytochrome C biogenesis protein transmembrane region CTY05_00133 PF07694 5TMR of 5TMR-LYT CTY05_00133 PF00990 Diguanylate cyclase, GGDEF domain CTY05_00134 PF07859 alpha/beta hydrolase fold CTY05_00136 PF03960 ArsC family CTY05_00137 PF03372 Endonuclease/Exonuclease/phosphatase family CTY05_00138 PF00156 Phosphoribosyl transferase domain CTY05_00139 PF07715 TonB-dependent Receptor Plug Domain CTY05_00139 PF00593 TonB dependent receptor CTY05_00141 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CTY05_00141 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CTY05_00142 PF03033 Glycosyltransferase family 28 N-terminal domain CTY05_00142 PF04101 Glycosyltransferase family 28 C-terminal domain CTY05_00143 PF08245 Mur ligase middle domain CTY05_00143 PF01225 Mur ligase family, catalytic domain CTY05_00143 PF02875 Mur ligase family, glutamate ligase domain CTY05_00144 PF07478 D-ala D-ala ligase C-terminus CTY05_00144 PF01820 D-ala D-ala ligase N-terminus CTY05_00145 PF08478 POTRA domain, FtsQ-type CTY05_00145 PF03799 Cell division protein FtsQ CTY05_00146 PF02491 SHS2 domain inserted in FTSA CTY05_00147 PF00091 Tubulin/FtsZ family, GTPase domain CTY05_00147 PF12327 FtsZ family, C-terminal domain CTY05_00148 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CTY05_00150 PF01551 Peptidase family M23 CTY05_00151 PF17831 Pyruvate dehydrogenase E1 component middle domain CTY05_00151 PF00456 Transketolase, thiamine diphosphate binding domain CTY05_00152 PF00364 Biotin-requiring enzyme CTY05_00152 PF02817 e3 binding domain CTY05_00152 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTY05_00154 PF01169 Uncharacterized protein family UPF0016 CTY05_00155 PF00593 TonB dependent receptor CTY05_00155 PF07715 TonB-dependent Receptor Plug Domain CTY05_00156 PF01613 Flavin reductase like domain CTY05_00156 PF00258 Flavodoxin CTY05_00157 PF03692 Putative zinc- or iron-chelating domain CTY05_00158 PF00571 CBS domain CTY05_00158 PF00478 IMP dehydrogenase / GMP reductase domain CTY05_00159 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTY05_00159 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTY05_00159 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTY05_00159 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTY05_00160 PF01243 Pyridoxamine 5'-phosphate oxidase CTY05_00160 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CTY05_00161 PF17768 RecJ OB domain CTY05_00161 PF01368 DHH family CTY05_00161 PF02272 DHHA1 domain CTY05_00163 PF00472 RF-1 domain CTY05_00163 PF03462 PCRF domain CTY05_00166 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_00167 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CTY05_00168 PF04452 RNA methyltransferase CTY05_00169 PF00924 Mechanosensitive ion channel CTY05_00171 PF16177 Acetyl-coenzyme A synthetase N-terminus CTY05_00171 PF00501 AMP-binding enzyme CTY05_00171 PF13193 AMP-binding enzyme C-terminal domain CTY05_00172 PF00857 Isochorismatase family CTY05_00173 PF01037 Lrp/AsnC ligand binding domain CTY05_00174 PF00296 Luciferase-like monooxygenase CTY05_00175 PF03358 NADPH-dependent FMN reductase CTY05_00176 PF00072 Response regulator receiver domain CTY05_00176 PF00196 Bacterial regulatory proteins, luxR family CTY05_00178 PF00072 Response regulator receiver domain CTY05_00178 PF01627 Hpt domain CTY05_00178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00178 PF00672 HAMP domain CTY05_00178 PF00512 His Kinase A (phospho-acceptor) domain CTY05_00179 PF04341 Protein of unknown function, DUF485 CTY05_00180 PF00474 Sodium:solute symporter family CTY05_00182 PF02028 BCCT, betaine/carnitine/choline family transporter CTY05_00184 PF17158 Membrane-associated sensor, integral membrane domain CTY05_00184 PF00990 Diguanylate cyclase, GGDEF domain CTY05_00185 PF17760 UvrA interaction domain CTY05_00185 PF00005 ABC transporter CTY05_00185 PF17755 UvrA DNA-binding domain CTY05_00186 PF00440 Bacterial regulatory proteins, tetR family CTY05_00186 PF16925 Tetracyclin repressor-like, C-terminal domain CTY05_00187 PF00107 Zinc-binding dehydrogenase CTY05_00187 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_00189 PF06942 GlpM protein CTY05_00190 PF02581 Thiamine monophosphate synthase CTY05_00190 PF03070 TENA/THI-4/PQQC family CTY05_00190 PF08543 Phosphomethylpyrimidine kinase CTY05_00192 PF07690 Major Facilitator Superfamily CTY05_00193 PF00436 Single-strand binding protein family CTY05_00195 PF03591 AzlC protein CTY05_00197 PF00324 Amino acid permease CTY05_00198 PF00155 Aminotransferase class I and II CTY05_00198 PF00392 Bacterial regulatory proteins, gntR family CTY05_00199 PF00202 Aminotransferase class-III CTY05_00200 PF00171 Aldehyde dehydrogenase family CTY05_00201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00202 PF00857 Isochorismatase family CTY05_00203 PF05726 Pirin C-terminal cupin domain CTY05_00203 PF02678 Pirin CTY05_00204 PF01593 Flavin containing amine oxidoreductase CTY05_00208 PF01555 DNA methylase CTY05_00209 PF09516 CfrBI restriction endonuclease CTY05_00214 PF07728 AAA domain (dynein-related subfamily) CTY05_00214 PF12102 Domain of unknown function (DUF3578) CTY05_00221 PF12146 Serine aminopeptidase, S33 CTY05_00222 PF03466 LysR substrate binding domain CTY05_00222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00223 PF13533 Biotin-lipoyl like CTY05_00225 PF00440 Bacterial regulatory proteins, tetR family CTY05_00225 PF17932 Tetracyclin repressor-like, C-terminal domain CTY05_00240 PF01037 Lrp/AsnC ligand binding domain CTY05_00244 PF07690 Major Facilitator Superfamily CTY05_00245 PF03466 LysR substrate binding domain CTY05_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00249 PF00248 Aldo/keto reductase family CTY05_00250 PF02311 AraC-like ligand binding domain CTY05_00250 PF12833 Helix-turn-helix domain CTY05_00253 PF01638 HxlR-like helix-turn-helix CTY05_00256 PF01638 HxlR-like helix-turn-helix CTY05_00257 PF02525 Flavodoxin-like fold CTY05_00259 PF13302 Acetyltransferase (GNAT) domain CTY05_00261 PF02705 K+ potassium transporter CTY05_00266 PF00230 Major intrinsic protein CTY05_00269 PF00977 Histidine biosynthesis protein CTY05_00270 PF01636 Phosphotransferase enzyme family CTY05_00275 PF00977 Histidine biosynthesis protein CTY05_00278 PF00117 Glutamine amidotransferase class-I CTY05_00279 PF00475 Imidazoleglycerol-phosphate dehydratase CTY05_00283 PF00583 Acetyltransferase (GNAT) family CTY05_00284 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CTY05_00284 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CTY05_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00285 PF00672 HAMP domain CTY05_00285 PF00512 His Kinase A (phospho-acceptor) domain CTY05_00286 PF00072 Response regulator receiver domain CTY05_00286 PF00486 Transcriptional regulatory protein, C terminal CTY05_00287 PF09371 Tex-like protein N-terminal domain CTY05_00287 PF16921 Tex protein YqgF-like domain CTY05_00287 PF17674 HHH domain CTY05_00287 PF00575 S1 RNA binding domain CTY05_00288 PF01740 STAS domain CTY05_00288 PF00916 Sulfate permease family CTY05_00289 PF00106 short chain dehydrogenase CTY05_00290 PF01053 Cys/Met metabolism PLP-dependent enzyme CTY05_00291 PF12848 ABC transporter CTY05_00291 PF00005 ABC transporter CTY05_00296 PF00529 HlyD membrane-fusion protein of T1SS CTY05_00296 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTY05_00297 PF00873 AcrB/AcrD/AcrF family CTY05_00298 PF01545 Cation efflux family CTY05_00304 PF00324 Amino acid permease CTY05_00307 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTY05_00310 PF01795 MraW methylase family CTY05_00312 PF00905 Penicillin binding protein transpeptidase domain CTY05_00312 PF03717 Penicillin-binding Protein dimerisation domain CTY05_00313 PF02875 Mur ligase family, glutamate ligase domain CTY05_00313 PF08245 Mur ligase middle domain CTY05_00313 PF01225 Mur ligase family, catalytic domain CTY05_00314 PF08245 Mur ligase middle domain CTY05_00314 PF02875 Mur ligase family, glutamate ligase domain CTY05_00314 PF01225 Mur ligase family, catalytic domain CTY05_00315 PF00953 Glycosyl transferase family 4 CTY05_00317 PF13847 Methyltransferase domain CTY05_00318 PF00912 Transglycosylase CTY05_00318 PF00905 Penicillin binding protein transpeptidase domain CTY05_00318 PF17092 Penicillin-binding protein OB-like domain CTY05_00323 PF11741 AMIN domain CTY05_00323 PF07660 Secretin and TonB N terminus short domain CTY05_00323 PF03958 Bacterial type II/III secretion system short domain CTY05_00323 PF00263 Bacterial type II and III secretion system protein CTY05_00324 PF01202 Shikimate kinase CTY05_00325 PF01761 3-dehydroquinate synthase CTY05_00327 PF01493 GXGXG motif CTY05_00327 PF01645 Conserved region in glutamate synthase CTY05_00327 PF04898 Glutamate synthase central domain CTY05_00327 PF00310 Glutamine amidotransferases class-II CTY05_00328 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CTY05_00328 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_00330 PF04011 LemA family CTY05_00331 PF04536 TPM domain CTY05_00333 PF07963 Prokaryotic N-terminal methylation motif CTY05_00333 PF00114 Pilin (bacterial filament) CTY05_00334 PF11846 Virulence factor membrane-bound polymerase, C-terminal CTY05_00334 PF04932 O-Antigen ligase CTY05_00334 PF15864 Protein glycosylation ligase CTY05_00335 PF00210 Ferritin-like domain CTY05_00336 PF04324 BFD-like [2Fe-2S] binding domain CTY05_00337 PF01042 Endoribonuclease L-PSP CTY05_00338 PF13291 ACT domain CTY05_00338 PF02824 TGS domain CTY05_00338 PF04607 Region found in RelA / SpoT proteins CTY05_00339 PF01192 RNA polymerase Rpb6 CTY05_00340 PF00625 Guanylate kinase CTY05_00341 PF02401 LytB protein CTY05_00349 PF00886 Ribosomal protein S16 CTY05_00350 PF05239 PRC-barrel domain CTY05_00350 PF01782 RimM N-terminal domain CTY05_00351 PF01746 tRNA (Guanine-1)-methyltransferase CTY05_00352 PF01245 Ribosomal protein L19 CTY05_00353 PF00561 alpha/beta hydrolase fold CTY05_00354 PF03280 Proteobacterial lipase chaperone protein CTY05_00355 PF16198 tRNA pseudouridylate synthase B C-terminal domain CTY05_00355 PF01509 TruB family pseudouridylate synthase (N terminal domain) CTY05_00355 PF09157 Pseudouridine synthase II TruB, C-terminal CTY05_00356 PF01925 Sulfite exporter TauE/SafE CTY05_00358 PF00892 EamA-like transporter family CTY05_00359 PF00892 EamA-like transporter family CTY05_00360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTY05_00360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTY05_00361 PF01565 FAD binding domain CTY05_00361 PF02913 FAD linked oxidases, C-terminal domain CTY05_00363 PF03992 Antibiotic biosynthesis monooxygenase CTY05_00364 PF02525 Flavodoxin-like fold CTY05_00366 PF07690 Major Facilitator Superfamily CTY05_00367 PF12805 FUSC-like inner membrane protein yccS CTY05_00368 PF00080 Copper/zinc superoxide dismutase (SODC) CTY05_00369 PF01594 AI-2E family transporter CTY05_00374 PF08241 Methyltransferase domain CTY05_00376 PF00324 Amino acid permease CTY05_00377 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CTY05_00377 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CTY05_00378 PF00202 Aminotransferase class-III CTY05_00379 PF04958 Arginine N-succinyltransferase beta subunit CTY05_00380 PF00171 Aldehyde dehydrogenase family CTY05_00381 PF04996 Succinylarginine dihydrolase CTY05_00382 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CTY05_00388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00388 PF03466 LysR substrate binding domain CTY05_00389 PF00892 EamA-like transporter family CTY05_00393 PF02092 Glycyl-tRNA synthetase beta subunit CTY05_00393 PF05746 DALR anticodon binding domain CTY05_00394 PF02091 Glycyl-tRNA synthetase alpha subunit CTY05_00395 PF07690 Major Facilitator Superfamily CTY05_00398 PF00571 CBS domain CTY05_00399 PF04024 PspC domain CTY05_00401 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_00401 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_00401 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTY05_00401 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_00403 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CTY05_00403 PF08501 Shikimate dehydrogenase substrate binding domain CTY05_00403 PF01488 Shikimate / quinate 5-dehydrogenase CTY05_00404 PF01218 Coproporphyrinogen III oxidase CTY05_00405 PF00925 GTP cyclohydrolase II CTY05_00406 PF02780 Transketolase, C-terminal domain CTY05_00406 PF02779 Transketolase, pyrimidine binding domain CTY05_00406 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CTY05_00407 PF00459 Inositol monophosphatase family CTY05_00408 PF00270 DEAD/DEAH box helicase CTY05_00408 PF00271 Helicase conserved C-terminal domain CTY05_00408 PF03880 DbpA RNA binding domain CTY05_00408 PF12343 Cold shock protein DEAD box A CTY05_00410 PF00005 ABC transporter CTY05_00411 PF02405 Permease MlaE CTY05_00413 PF05494 MlaC protein CTY05_00415 PF01544 CorA-like Mg2+ transporter protein CTY05_00416 PF03641 Possible lysine decarboxylase CTY05_00417 PF00293 NUDIX domain CTY05_00418 PF00156 Phosphoribosyl transferase domain CTY05_00419 PF00271 Helicase conserved C-terminal domain CTY05_00419 PF00270 DEAD/DEAH box helicase CTY05_00419 PF17191 RecG wedge domain CTY05_00422 PF01553 Acyltransferase CTY05_00424 PF00375 Sodium:dicarboxylate symporter family CTY05_00426 PF01926 50S ribosome-binding GTPase CTY05_00427 PF02082 Transcriptional regulator CTY05_00428 PF00970 Oxidoreductase FAD-binding domain CTY05_00428 PF00042 Globin CTY05_00428 PF00175 Oxidoreductase NAD-binding domain CTY05_00429 PF05872 Bacterial protein of unknown function (DUF853) CTY05_00430 PF01053 Cys/Met metabolism PLP-dependent enzyme CTY05_00431 PF00117 Glutamine amidotransferase class-I CTY05_00432 PF00338 Ribosomal protein S10p/S20e CTY05_00433 PF00297 Ribosomal protein L3 CTY05_00434 PF00573 Ribosomal protein L4/L1 family CTY05_00435 PF00276 Ribosomal protein L23 CTY05_00436 PF03947 Ribosomal Proteins L2, C-terminal domain CTY05_00436 PF00181 Ribosomal Proteins L2, RNA binding domain CTY05_00437 PF00203 Ribosomal protein S19 CTY05_00438 PF00237 Ribosomal protein L22p/L17e CTY05_00439 PF07650 KH domain CTY05_00439 PF00189 Ribosomal protein S3, C-terminal domain CTY05_00440 PF00252 Ribosomal protein L16p/L10e CTY05_00441 PF00831 Ribosomal L29 protein CTY05_00442 PF00366 Ribosomal protein S17 CTY05_00443 PF00238 Ribosomal protein L14p/L23e CTY05_00444 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CTY05_00444 PF00467 KOW motif CTY05_00445 PF00673 ribosomal L5P family C-terminus CTY05_00445 PF00281 Ribosomal protein L5 CTY05_00446 PF00253 Ribosomal protein S14p/S29e CTY05_00447 PF00410 Ribosomal protein S8 CTY05_00448 PF00347 Ribosomal protein L6 CTY05_00449 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CTY05_00450 PF00333 Ribosomal protein S5, N-terminal domain CTY05_00450 PF03719 Ribosomal protein S5, C-terminal domain CTY05_00451 PF00327 Ribosomal protein L30p/L7e CTY05_00452 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CTY05_00453 PF00344 SecY translocase CTY05_00454 PF00444 Ribosomal protein L36 CTY05_00455 PF00416 Ribosomal protein S13/S18 CTY05_00456 PF00411 Ribosomal protein S11 CTY05_00457 PF01479 S4 domain CTY05_00457 PF00163 Ribosomal protein S4/S9 N-terminal domain CTY05_00458 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CTY05_00458 PF01000 RNA polymerase Rpb3/RpoA insert domain CTY05_00458 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CTY05_00459 PF01196 Ribosomal protein L17 CTY05_00460 PF00743 Flavin-binding monooxygenase-like CTY05_00461 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_00461 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_00461 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_00462 PF03937 Flavinator of succinate dehydrogenase CTY05_00469 PF09526 Probable metal-binding protein (DUF2387) CTY05_00470 PF01432 Peptidase family M3 CTY05_00471 PF08206 Ribonuclease B OB domain CTY05_00471 PF17876 Cold shock domain CTY05_00471 PF00773 RNB domain CTY05_00471 PF08461 Ribonuclease R winged-helix domain CTY05_00471 PF00575 S1 RNA binding domain CTY05_00480 PF01557 Fumarylacetoacetate (FAA) hydrolase family CTY05_00481 PF12833 Helix-turn-helix domain CTY05_00482 PF00892 EamA-like transporter family CTY05_00483 PF03631 Virulence factor BrkB CTY05_00484 PF03358 NADPH-dependent FMN reductase CTY05_00489 PF02130 Uncharacterized protein family UPF0054 CTY05_00490 PF02562 PhoH-like protein CTY05_00491 PF04055 Radical SAM superfamily CTY05_00491 PF01938 TRAM domain CTY05_00491 PF00919 Uncharacterized protein family UPF0004 CTY05_00492 PF01551 Peptidase family M23 CTY05_00492 PF10145 Phage-related minor tail protein CTY05_00492 PF01464 Transglycosylase SLT domain CTY05_00494 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CTY05_00494 PF00056 lactate/malate dehydrogenase, NAD binding domain CTY05_00498 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CTY05_00499 PF01066 CDP-alcohol phosphatidyltransferase CTY05_00505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_00505 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_00505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_00506 PF17932 Tetracyclin repressor-like, C-terminal domain CTY05_00506 PF00440 Bacterial regulatory proteins, tetR family CTY05_00509 PF01039 Carboxyl transferase domain CTY05_00510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_00510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_00510 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_00512 PF02785 Biotin carboxylase C-terminal domain CTY05_00512 PF00289 Biotin carboxylase, N-terminal domain CTY05_00512 PF00364 Biotin-requiring enzyme CTY05_00512 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTY05_00514 PF04386 Stringent starvation protein B CTY05_00515 PF00043 Glutathione S-transferase, C-terminal domain CTY05_00515 PF13417 Glutathione S-transferase, N-terminal domain CTY05_00516 PF00380 Ribosomal protein S9/S16 CTY05_00517 PF00572 Ribosomal protein L13 CTY05_00518 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CTY05_00519 PF00398 Ribosomal RNA adenine dimethylase CTY05_00520 PF00149 Calcineurin-like phosphoesterase CTY05_00524 PF01926 50S ribosome-binding GTPase CTY05_00524 PF16360 GTP-binding GTPase Middle Region CTY05_00524 PF13167 GTP-binding GTPase N-terminal CTY05_00526 PF13091 PLD-like domain CTY05_00527 PF00149 Calcineurin-like phosphoesterase CTY05_00527 PF10518 TAT (twin-arginine translocation) pathway signal sequence CTY05_00528 PF01389 OmpA-like transmembrane domain CTY05_00528 PF00691 OmpA family CTY05_00529 PF17152 Periplasmic sensor domain CTY05_00529 PF00990 Diguanylate cyclase, GGDEF domain CTY05_00533 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTY05_00533 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_00535 PF04273 Putative phosphatase (DUF442) CTY05_00535 PF00753 Metallo-beta-lactamase superfamily CTY05_00536 PF00561 alpha/beta hydrolase fold CTY05_00537 PF00085 Thioredoxin CTY05_00538 PF03061 Thioesterase superfamily CTY05_00540 PF04461 Protein of unknown function (DUF520) CTY05_00542 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CTY05_00542 PF01266 FAD dependent oxidoreductase CTY05_00544 PF03795 YCII-related domain CTY05_00545 PF04279 Intracellular septation protein A CTY05_00546 PF02811 PHP domain CTY05_00547 PF01062 Bestrophin, RFP-TM, chloride channel CTY05_00548 PF04002 RadC-like JAB domain CTY05_00549 PF04127 DNA / pantothenate metabolism flavoprotein CTY05_00549 PF02441 Flavoprotein CTY05_00550 PF07549 SecD/SecF GG Motif CTY05_00550 PF02355 Protein export membrane protein CTY05_00551 PF02355 Protein export membrane protein CTY05_00551 PF13721 SecD export protein N-terminal TM region CTY05_00551 PF07549 SecD/SecF GG Motif CTY05_00552 PF02699 Preprotein translocase subunit CTY05_00553 PF01702 Queuine tRNA-ribosyltransferase CTY05_00556 PF02547 Queuosine biosynthesis protein CTY05_00558 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00558 PF07689 KaiB domain CTY05_00558 PF00512 His Kinase A (phospho-acceptor) domain CTY05_00559 PF03710 Glutamate-ammonia ligase adenylyltransferase CTY05_00559 PF08335 GlnD PII-uridylyltransferase CTY05_00560 PF01063 Amino-transferase class IV CTY05_00563 PF01522 Polysaccharide deacetylase CTY05_00564 PF00535 Glycosyl transferase family 2 CTY05_00565 PF13439 Glycosyltransferase Family 4 CTY05_00565 PF00534 Glycosyl transferases group 1 CTY05_00570 PF17102 Stealth protein CR3, conserved region 3 CTY05_00570 PF11380 Stealth protein CR2, conserved region 2 CTY05_00570 PF17101 Stealth protein CR1, conserved region 1 CTY05_00571 PF01336 OB-fold nucleic acid binding domain CTY05_00571 PF00152 tRNA synthetases class II (D, K and N) CTY05_00571 PF02938 GAD domain CTY05_00573 PF07715 TonB-dependent Receptor Plug Domain CTY05_00573 PF00593 TonB dependent receptor CTY05_00577 PF06146 Phosphate-starvation-inducible E CTY05_00578 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_00578 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_00578 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTY05_00578 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_00579 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTY05_00579 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_00579 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_00579 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_00581 PF00512 His Kinase A (phospho-acceptor) domain CTY05_00581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00581 PF00672 HAMP domain CTY05_00582 PF00486 Transcriptional regulatory protein, C terminal CTY05_00582 PF00072 Response regulator receiver domain CTY05_00583 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CTY05_00587 PF01923 Cobalamin adenosyltransferase CTY05_00588 PF00593 TonB dependent receptor CTY05_00588 PF07715 TonB-dependent Receptor Plug Domain CTY05_00589 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CTY05_00590 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_00595 PF00290 Tryptophan synthase alpha chain CTY05_00596 PF01039 Carboxyl transferase domain CTY05_00597 PF02875 Mur ligase family, glutamate ligase domain CTY05_00597 PF08245 Mur ligase middle domain CTY05_00600 PF00753 Metallo-beta-lactamase superfamily CTY05_00601 PF00578 AhpC/TSA family CTY05_00601 PF10417 C-terminal domain of 1-Cys peroxiredoxin CTY05_00602 PF01043 SecA preprotein cross-linking domain CTY05_00602 PF07516 SecA Wing and Scaffold domain CTY05_00602 PF07517 SecA DEAD-like domain CTY05_00602 PF02810 SEC-C motif CTY05_00604 PF00083 Sugar (and other) transporter CTY05_00604 PF07690 Major Facilitator Superfamily CTY05_00605 PF03006 Haemolysin-III related CTY05_00607 PF13673 Acetyltransferase (GNAT) domain CTY05_00610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTY05_00610 PF00378 Enoyl-CoA hydratase/isomerase CTY05_00610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTY05_00611 PF02803 Thiolase, C-terminal domain CTY05_00611 PF00108 Thiolase, N-terminal domain CTY05_00612 PF12833 Helix-turn-helix domain CTY05_00612 PF02311 AraC-like ligand binding domain CTY05_00613 PF02515 CoA-transferase family III CTY05_00614 PF04966 Carbohydrate-selective porin, OprB family CTY05_00615 PF01011 PQQ enzyme repeat CTY05_00616 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTY05_00616 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTY05_00618 PF00893 Small Multidrug Resistance protein CTY05_00620 PF02803 Thiolase, C-terminal domain CTY05_00620 PF00108 Thiolase, N-terminal domain CTY05_00622 PF00691 OmpA family CTY05_00622 PF13505 Outer membrane protein beta-barrel domain CTY05_00624 PF01139 tRNA-splicing ligase RtcB CTY05_00625 PF00324 Amino acid permease CTY05_00626 PF08468 Methyltransferase small domain N-terminal CTY05_00626 PF05175 Methyltransferase small domain CTY05_00627 PF00860 Permease family CTY05_00629 PF01741 Large-conductance mechanosensitive channel, MscL CTY05_00632 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CTY05_00632 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CTY05_00632 PF06827 Zinc finger found in FPG and IleRS CTY05_00633 PF02245 Methylpurine-DNA glycosylase (MPG) CTY05_00634 PF00593 TonB dependent receptor CTY05_00634 PF07715 TonB-dependent Receptor Plug Domain CTY05_00635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_00636 PF03547 Membrane transport protein CTY05_00638 PF10411 Disulfide bond isomerase protein N-terminus CTY05_00638 PF13098 Thioredoxin-like domain CTY05_00639 PF01571 Aminomethyltransferase folate-binding domain CTY05_00641 PF04343 Protein of unknown function, DUF488 CTY05_00642 PF08274 PhnA Zinc-Ribbon CTY05_00642 PF03831 PhnA domain CTY05_00643 PF07411 Domain of unknown function (DUF1508) CTY05_00644 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTY05_00644 PF03129 Anticodon binding domain CTY05_00644 PF04073 Aminoacyl-tRNA editing domain CTY05_00645 PF00873 AcrB/AcrD/AcrF family CTY05_00648 PF00072 Response regulator receiver domain CTY05_00649 PF00072 Response regulator receiver domain CTY05_00650 PF01584 CheW-like domain CTY05_00651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTY05_00651 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CTY05_00652 PF01627 Hpt domain CTY05_00652 PF00072 Response regulator receiver domain CTY05_00652 PF01584 CheW-like domain CTY05_00652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00654 PF04055 Radical SAM superfamily CTY05_00654 PF06969 HemN C-terminal domain CTY05_00656 PF07687 Peptidase dimerisation domain CTY05_00656 PF01546 Peptidase family M20/M25/M40 CTY05_00657 PF08085 Entericidin EcnA/B family CTY05_00659 PF04304 Protein of unknown function (DUF454) CTY05_00660 PF03734 L,D-transpeptidase catalytic domain CTY05_00660 PF17969 L,D-transpeptidase C-terminal domain CTY05_00668 PF00175 Oxidoreductase NAD-binding domain CTY05_00668 PF00258 Flavodoxin CTY05_00668 PF00667 FAD binding domain CTY05_00670 PF12805 FUSC-like inner membrane protein yccS CTY05_00671 PF07690 Major Facilitator Superfamily CTY05_00672 PF00881 Nitroreductase family CTY05_00674 PF01235 Sodium:alanine symporter family CTY05_00675 PF01734 Patatin-like phospholipase CTY05_00676 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_00676 PF13291 ACT domain CTY05_00677 PF05992 SbmA/BacA-like family CTY05_00682 PF02934 GatB/GatE catalytic domain CTY05_00682 PF02637 GatB domain CTY05_00683 PF01425 Amidase CTY05_00684 PF02686 Glu-tRNAGln amidotransferase C subunit CTY05_00686 PF04085 rod shape-determining protein MreC CTY05_00687 PF04093 rod shape-determining protein MreD CTY05_00688 PF02545 Maf-like protein CTY05_00689 PF00575 S1 RNA binding domain CTY05_00689 PF10150 Ribonuclease E/G family CTY05_00691 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CTY05_00691 PF06974 Protein of unknown function (DUF1298) CTY05_00692 PF01507 Phosphoadenosine phosphosulfate reductase family CTY05_00695 PF02525 Flavodoxin-like fold CTY05_00700 PF02673 Bacitracin resistance protein BacA CTY05_00701 PF06719 AraC-type transcriptional regulator N-terminus CTY05_00701 PF12833 Helix-turn-helix domain CTY05_00702 PF08990 Erythronolide synthase docking CTY05_00702 PF14765 Polyketide synthase dehydratase CTY05_00702 PF00550 Phosphopantetheine attachment site CTY05_00702 PF09277 Erythronolide synthase, docking CTY05_00702 PF00109 Beta-ketoacyl synthase, N-terminal domain CTY05_00702 PF02801 Beta-ketoacyl synthase, C-terminal domain CTY05_00702 PF16197 Ketoacyl-synthetase C-terminal extension CTY05_00702 PF08659 KR domain CTY05_00702 PF00698 Acyl transferase domain CTY05_00702 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_00703 PF01965 DJ-1/PfpI family CTY05_00705 PF00324 Amino acid permease CTY05_00706 PF04303 PrpF protein CTY05_00707 PF00348 Polyprenyl synthetase CTY05_00708 PF04237 YjbR CTY05_00709 PF01145 SPFH domain / Band 7 family CTY05_00711 PF01734 Patatin-like phospholipase CTY05_00715 PF08019 Phosphoethanolamine transferase EptA/EptB CTY05_00715 PF00884 Sulfatase CTY05_00716 PF00072 Response regulator receiver domain CTY05_00716 PF00486 Transcriptional regulatory protein, C terminal CTY05_00717 PF08521 Two-component sensor kinase N-terminal CTY05_00717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_00717 PF00512 His Kinase A (phospho-acceptor) domain CTY05_00719 PF00909 Ammonium Transporter Family CTY05_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00720 PF03466 LysR substrate binding domain CTY05_00724 PF08264 Anticodon-binding domain of tRNA CTY05_00724 PF10458 Valyl tRNA synthetase tRNA binding arm CTY05_00724 PF00133 tRNA synthetases class I (I, L, M and V) CTY05_00728 PF01906 Putative heavy-metal-binding CTY05_00729 PF01906 Putative heavy-metal-binding CTY05_00730 PF02321 Outer membrane efflux protein CTY05_00731 PF00873 AcrB/AcrD/AcrF family CTY05_00732 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTY05_00732 PF00529 HlyD membrane-fusion protein of T1SS CTY05_00733 PF01569 PAP2 superfamily CTY05_00735 PF00348 Polyprenyl synthetase CTY05_00736 PF00829 Ribosomal prokaryotic L21 protein CTY05_00737 PF01016 Ribosomal L27 protein CTY05_00738 PF03548 Outer membrane lipoprotein carrier protein LolA CTY05_00740 PF02403 Seryl-tRNA synthetase N-terminal domain CTY05_00740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTY05_00741 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTY05_00741 PF14824 Sirohaem biosynthesis protein central CTY05_00741 PF10414 Sirohaem synthase dimerisation region CTY05_00742 PF00588 SpoU rRNA Methylase family CTY05_00743 PF01638 HxlR-like helix-turn-helix CTY05_00744 PF03358 NADPH-dependent FMN reductase CTY05_00745 PF13520 Amino acid permease CTY05_00746 PF00465 Iron-containing alcohol dehydrogenase CTY05_00748 PF03099 Biotin/lipoate A/B protein ligase family CTY05_00749 PF04359 Protein of unknown function (DUF493) CTY05_00750 PF03979 Sigma-70 factor, region 1.1 CTY05_00750 PF04546 Sigma-70, non-essential region CTY05_00750 PF04539 Sigma-70 region 3 CTY05_00750 PF04545 Sigma-70, region 4 CTY05_00750 PF00140 Sigma-70 factor, region 1.2 CTY05_00750 PF04542 Sigma-70 region 2 CTY05_00755 PF00285 Citrate synthase, C-terminal domain CTY05_00756 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CTY05_00757 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CTY05_00758 PF02910 Fumarate reductase flavoprotein C-term CTY05_00758 PF00890 FAD binding domain CTY05_00759 PF13085 2Fe-2S iron-sulfur cluster binding domain CTY05_00760 PF00676 Dehydrogenase E1 component CTY05_00760 PF16870 2-oxoglutarate dehydrogenase C-terminal CTY05_00760 PF16078 2-oxoglutarate dehydrogenase N-terminus CTY05_00760 PF02779 Transketolase, pyrimidine binding domain CTY05_00761 PF00364 Biotin-requiring enzyme CTY05_00761 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTY05_00761 PF02817 e3 binding domain CTY05_00762 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_00762 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTY05_00763 PF08442 ATP-grasp domain CTY05_00763 PF00549 CoA-ligase CTY05_00764 PF00549 CoA-ligase CTY05_00764 PF02629 CoA binding domain CTY05_00767 PF00579 tRNA synthetases class I (W and Y) CTY05_00768 PF05661 Protein of unknown function (DUF808) CTY05_00769 PF04228 Putative neutral zinc metallopeptidase CTY05_00770 PF00999 Sodium/hydrogen exchanger family CTY05_00773 PF09587 Bacterial capsule synthesis protein PGA_cap CTY05_00775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTY05_00776 PF00582 Universal stress protein family CTY05_00777 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_00778 PF01272 Transcription elongation factor, GreA/GreB, C-term CTY05_00778 PF03449 Transcription elongation factor, N-terminal CTY05_00779 PF02142 MGS-like domain CTY05_00779 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CTY05_00779 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTY05_00780 PF00117 Glutamine amidotransferase class-I CTY05_00780 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CTY05_00783 PF01985 CRS1 / YhbY (CRM) domain CTY05_00784 PF01728 FtsJ-like methyltransferase CTY05_00785 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_00785 PF17862 AAA+ lid domain CTY05_00785 PF01434 Peptidase family M41 CTY05_00785 PF06480 FtsH Extracellular CTY05_00786 PF00809 Pterin binding enzyme CTY05_00790 PF16655 PhoD-like phosphatase, N-terminal domain CTY05_00790 PF09423 PhoD-like phosphatase CTY05_00793 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CTY05_00793 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CTY05_00796 PF00083 Sugar (and other) transporter CTY05_00797 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CTY05_00797 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CTY05_00798 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CTY05_00798 PF01266 FAD dependent oxidoreductase CTY05_00799 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CTY05_00799 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CTY05_00800 PF00781 Diacylglycerol kinase catalytic domain CTY05_00801 PF00149 Calcineurin-like phosphoesterase CTY05_00803 PF00166 Chaperonin 10 Kd subunit CTY05_00804 PF00118 TCP-1/cpn60 chaperonin family CTY05_00805 PF01219 Prokaryotic diacylglycerol kinase CTY05_00806 PF00753 Metallo-beta-lactamase superfamily CTY05_00807 PF03009 Glycerophosphoryl diester phosphodiesterase family CTY05_00808 PF00873 AcrB/AcrD/AcrF family CTY05_00810 PF01435 Peptidase family M48 CTY05_00811 PF01464 Transglycosylase SLT domain CTY05_00812 PF01171 PP-loop family CTY05_00814 PF01464 Transglycosylase SLT domain CTY05_00814 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTY05_00815 PF03449 Transcription elongation factor, N-terminal CTY05_00815 PF01272 Transcription elongation factor, GreA/GreB, C-term CTY05_00818 PF13193 AMP-binding enzyme C-terminal domain CTY05_00818 PF00668 Condensation domain CTY05_00818 PF00550 Phosphopantetheine attachment site CTY05_00818 PF00975 Thioesterase domain CTY05_00818 PF00501 AMP-binding enzyme CTY05_00825 PF00881 Nitroreductase family CTY05_00828 PF02595 Glycerate kinase family CTY05_00829 PF00384 Molybdopterin oxidoreductase CTY05_00830 PF02634 FdhD/NarQ family CTY05_00831 PF06803 Protein of unknown function (DUF1232) CTY05_00832 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTY05_00832 PF11890 Domain of unknown function (DUF3410) CTY05_00832 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTY05_00833 PF00152 tRNA synthetases class II (D, K and N) CTY05_00835 PF18073 Rubredoxin metal binding domain CTY05_00836 PF00324 Amino acid permease CTY05_00838 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CTY05_00838 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CTY05_00839 PF01678 Diaminopimelate epimerase CTY05_00840 PF00561 alpha/beta hydrolase fold CTY05_00841 PF01810 LysE type translocator CTY05_00842 PF00589 Phage integrase family CTY05_00842 PF02899 Phage integrase, N-terminal SAM-like domain CTY05_00843 PF01012 Electron transfer flavoprotein domain CTY05_00844 PF01012 Electron transfer flavoprotein domain CTY05_00844 PF00766 Electron transfer flavoprotein FAD-binding domain CTY05_00845 PF00521 DNA gyrase/topoisomerase IV, subunit A CTY05_00845 PF03989 DNA gyrase C-terminal domain, beta-propeller CTY05_00848 PF00535 Glycosyl transferase family 2 CTY05_00852 PF13533 Biotin-lipoyl like CTY05_00854 PF00266 Aminotransferase class-V CTY05_00857 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CTY05_00859 PF12704 MacB-like periplasmic core domain CTY05_00859 PF02687 FtsX-like permease family CTY05_00860 PF00005 ABC transporter CTY05_00861 PF00753 Metallo-beta-lactamase superfamily CTY05_00861 PF13567 Domain of unknown function (DUF4131) CTY05_00861 PF03772 Competence protein CTY05_00863 PF06965 Na+/H+ antiporter 1 CTY05_00863 PF01343 Peptidase family S49 CTY05_00864 PF12697 Alpha/beta hydrolase family CTY05_00865 PF00551 Formyl transferase CTY05_00866 PF02769 AIR synthase related protein, C-terminal domain CTY05_00866 PF00586 AIR synthase related protein, N-terminal domain CTY05_00867 PF01594 AI-2E family transporter CTY05_00868 PF11638 DnaA N-terminal domain CTY05_00868 PF08299 Bacterial dnaA protein helix-turn-helix CTY05_00868 PF00308 Bacterial dnaA protein CTY05_00874 PF00588 SpoU rRNA Methylase family CTY05_00874 PF08032 RNA 2'-O ribose methyltransferase substrate binding CTY05_00875 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CTY05_00877 PF00691 OmpA family CTY05_00878 PF07676 WD40-like Beta Propeller Repeat CTY05_00878 PF04052 TolB amino-terminal domain CTY05_00880 PF02472 Biopolymer transport protein ExbD/TolR CTY05_00881 PF01618 MotA/TolQ/ExbB proton channel family CTY05_00882 PF03061 Thioesterase superfamily CTY05_00883 PF01546 Peptidase family M20/M25/M40 CTY05_00883 PF07687 Peptidase dimerisation domain CTY05_00884 PF05496 Holliday junction DNA helicase RuvB P-loop domain CTY05_00884 PF17864 RuvB AAA lid domain CTY05_00884 PF05491 RuvB C-terminal winged helix domain CTY05_00885 PF07499 RuvA, C-terminal domain CTY05_00885 PF01330 RuvA N terminal domain CTY05_00886 PF01966 HD domain CTY05_00887 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CTY05_00887 PF02769 AIR synthase related protein, C-terminal domain CTY05_00887 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CTY05_00888 PF07690 Major Facilitator Superfamily CTY05_00890 PF01784 NIF3 (NGG1p interacting factor 3) CTY05_00891 PF00378 Enoyl-CoA hydratase/isomerase CTY05_00892 PF00293 NUDIX domain CTY05_00892 PF01467 Cytidylyltransferase-like CTY05_00894 PF00578 AhpC/TSA family CTY05_00897 PF06508 Queuosine biosynthesis protein QueC CTY05_00899 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CTY05_00899 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_00899 PF14602 Hexapeptide repeat of succinyl-transferase CTY05_00901 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00901 PF03466 LysR substrate binding domain CTY05_00902 PF12857 TOBE-like domain CTY05_00902 PF00005 ABC transporter CTY05_00903 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_00904 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_00907 PF01063 Amino-transferase class IV CTY05_00908 PF02618 YceG-like family CTY05_00909 PF02223 Thymidylate kinase CTY05_00911 PF02910 Fumarate reductase flavoprotein C-term CTY05_00911 PF00890 FAD binding domain CTY05_00912 PF13180 PDZ domain CTY05_00914 PF03144 Elongation factor Tu domain 2 CTY05_00914 PF06421 GTP-binding protein LepA C-terminus CTY05_00914 PF00679 Elongation factor G C-terminus CTY05_00914 PF00009 Elongation factor Tu GTP binding domain CTY05_00915 PF10502 Signal peptidase, peptidase S26 CTY05_00917 PF00035 Double-stranded RNA binding motif CTY05_00917 PF14622 Ribonuclease-III-like CTY05_00918 PF07650 KH domain CTY05_00918 PF01926 50S ribosome-binding GTPase CTY05_00920 PF02565 Recombination protein O C terminal CTY05_00920 PF11967 Recombination protein O N terminal CTY05_00921 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CTY05_00922 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CTY05_00923 PF00106 short chain dehydrogenase CTY05_00930 PF00990 Diguanylate cyclase, GGDEF domain CTY05_00930 PF17151 Periplasmic sensor domain CTY05_00932 PF04851 Type III restriction enzyme, res subunit CTY05_00932 PF17757 UvrB interaction domain CTY05_00932 PF00271 Helicase conserved C-terminal domain CTY05_00932 PF12344 Ultra-violet resistance protein B CTY05_00932 PF02151 UvrB/uvrC motif CTY05_00934 PF00892 EamA-like transporter family CTY05_00935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTY05_00935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTY05_00938 PF01018 GTP1/OBG CTY05_00938 PF01926 50S ribosome-binding GTPase CTY05_00939 PF00696 Amino acid kinase family CTY05_00939 PF01472 PUA domain CTY05_00941 PF07759 Protein of unknown function (DUF1615) CTY05_00942 PF01207 Dihydrouridine synthase (Dus) CTY05_00943 PF03060 Nitronate monooxygenase CTY05_00946 PF02350 UDP-N-acetylglucosamine 2-epimerase CTY05_00952 PF00875 DNA photolyase CTY05_00952 PF03441 FAD binding domain of DNA photolyase CTY05_00953 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTY05_00954 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_00955 PF07943 Penicillin-binding protein 5, C-terminal domain CTY05_00955 PF00768 D-alanyl-D-alanine carboxypeptidase CTY05_00957 PF03971 Monomeric isocitrate dehydrogenase CTY05_00958 PF00849 RNA pseudouridylate synthase CTY05_00959 PF00180 Isocitrate/isopropylmalate dehydrogenase CTY05_00963 PF06779 Uncharacterised MFS-type transporter YbfB CTY05_00964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_00964 PF03466 LysR substrate binding domain CTY05_00966 PF02567 Phenazine biosynthesis-like protein CTY05_00967 PF00675 Insulinase (Peptidase family M16) CTY05_00967 PF05193 Peptidase M16 inactive domain CTY05_00972 PF01867 CRISPR associated protein Cas1 CTY05_00974 PF09611 CRISPR-associated protein (Cas_Csy1) CTY05_00975 PF09614 CRISPR-associated protein (Cas_Csy2) CTY05_00976 PF09615 CRISPR-associated protein (Cas_Csy3) CTY05_00978 PF02581 Thiamine monophosphate synthase CTY05_00979 PF00202 Aminotransferase class-III CTY05_00981 PF00849 RNA pseudouridylate synthase CTY05_00982 PF18337 RapA N-terminal Tudor like domain CTY05_00982 PF00271 Helicase conserved C-terminal domain CTY05_00982 PF18339 RapA N-terminal Tudor like domain 1 CTY05_00982 PF12137 RNA polymerase recycling family C-terminal CTY05_00982 PF00176 SNF2 family N-terminal domain CTY05_00984 PF00440 Bacterial regulatory proteins, tetR family CTY05_00985 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_00985 PF00175 Oxidoreductase NAD-binding domain CTY05_00985 PF00970 Oxidoreductase FAD-binding domain CTY05_00986 PF00487 Fatty acid desaturase CTY05_00988 PF17754 MftR C-terminal domain CTY05_00988 PF00440 Bacterial regulatory proteins, tetR family CTY05_00990 PF00202 Aminotransferase class-III CTY05_00991 PF00282 Pyridoxal-dependent decarboxylase conserved domain CTY05_00992 PF00171 Aldehyde dehydrogenase family CTY05_00993 PF01037 Lrp/AsnC ligand binding domain CTY05_00994 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTY05_00994 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTY05_00994 PF00205 Thiamine pyrophosphate enzyme, central domain CTY05_00995 PF00324 Amino acid permease CTY05_00996 PF12849 PBP superfamily domain CTY05_00997 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_00998 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_00999 PF00005 ABC transporter CTY05_01000 PF01343 Peptidase family S49 CTY05_01000 PF08496 Peptidase family S49 N-terminal CTY05_01003 PF08328 Adenylosuccinate lyase C-terminal CTY05_01003 PF00206 Lyase CTY05_01004 PF04356 Protein of unknown function (DUF489) CTY05_01006 PF00293 NUDIX domain CTY05_01006 PF13344 Haloacid dehalogenase-like hydrolase CTY05_01007 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_01008 PF07943 Penicillin-binding protein 5, C-terminal domain CTY05_01008 PF00768 D-alanyl-D-alanine carboxypeptidase CTY05_01011 PF01975 Survival protein SurE CTY05_01012 PF01551 Peptidase family M23 CTY05_01012 PF01476 LysM domain CTY05_01013 PF03466 LysR substrate binding domain CTY05_01013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01014 PF05362 Lon protease (S16) C-terminal proteolytic domain CTY05_01014 PF13654 AAA domain CTY05_01015 PF07690 Major Facilitator Superfamily CTY05_01016 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTY05_01017 PF13593 SBF-like CPA transporter family (DUF4137) CTY05_01018 PF01197 Ribosomal protein L31 CTY05_01019 PF00563 EAL domain CTY05_01019 PF12792 CSS motif domain associated with EAL CTY05_01021 PF04055 Radical SAM superfamily CTY05_01022 PF01132 Elongation factor P (EF-P) OB domain CTY05_01022 PF08207 Elongation factor P (EF-P) KOW-like domain CTY05_01022 PF09285 Elongation factor P, C-terminal CTY05_01023 PF02554 Carbon starvation protein CstA CTY05_01023 PF13722 5TM C-terminal transporter carbon starvation CstA CTY05_01024 PF04328 Selenoprotein, putative CTY05_01032 PF02678 Pirin CTY05_01032 PF17954 Quercetinase C-terminal cupin domain CTY05_01033 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_01034 PF08348 YheO-like PAS domain CTY05_01034 PF13309 HTH domain CTY05_01036 PF00668 Condensation domain CTY05_01036 PF00501 AMP-binding enzyme CTY05_01036 PF13193 AMP-binding enzyme C-terminal domain CTY05_01036 PF00550 Phosphopantetheine attachment site CTY05_01037 PF00668 Condensation domain CTY05_01037 PF13193 AMP-binding enzyme C-terminal domain CTY05_01037 PF00501 AMP-binding enzyme CTY05_01037 PF00975 Thioesterase domain CTY05_01037 PF00550 Phosphopantetheine attachment site CTY05_01040 PF01032 FecCD transport family CTY05_01041 PF01032 FecCD transport family CTY05_01042 PF00005 ABC transporter CTY05_01043 PF01497 Periplasmic binding protein CTY05_01044 PF00593 TonB dependent receptor CTY05_01044 PF07715 TonB-dependent Receptor Plug Domain CTY05_01045 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CTY05_01046 PF00668 Condensation domain CTY05_01046 PF00501 AMP-binding enzyme CTY05_01046 PF00550 Phosphopantetheine attachment site CTY05_01047 PF00501 AMP-binding enzyme CTY05_01047 PF13193 AMP-binding enzyme C-terminal domain CTY05_01048 PF00857 Isochorismatase family CTY05_01048 PF00550 Phosphopantetheine attachment site CTY05_01049 PF00282 Pyridoxal-dependent decarboxylase conserved domain CTY05_01051 PF00664 ABC transporter transmembrane region CTY05_01051 PF00005 ABC transporter CTY05_01052 PF00664 ABC transporter transmembrane region CTY05_01052 PF00005 ABC transporter CTY05_01053 PF00975 Thioesterase domain CTY05_01055 PF00425 chorismate binding enzyme CTY05_01057 PF01208 Uroporphyrinogen decarboxylase (URO-D) CTY05_01058 PF05675 Protein of unknown function (DUF817) CTY05_01061 PF00144 Beta-lactamase CTY05_01063 PF01799 [2Fe-2S] binding domain CTY05_01063 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_01064 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CTY05_01064 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CTY05_01067 PF00218 Indole-3-glycerol phosphate synthase CTY05_01068 PF00591 Glycosyl transferase family, a/b domain CTY05_01068 PF02885 Glycosyl transferase family, helical bundle domain CTY05_01069 PF00593 TonB dependent receptor CTY05_01069 PF07715 TonB-dependent Receptor Plug Domain CTY05_01070 PF01433 Peptidase family M1 domain CTY05_01070 PF11838 ERAP1-like C-terminal domain CTY05_01071 PF00117 Glutamine amidotransferase class-I CTY05_01073 PF00854 POT family CTY05_01075 PF04345 Chorismate lyase CTY05_01076 PF01040 UbiA prenyltransferase family CTY05_01083 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CTY05_01083 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CTY05_01084 PF01784 NIF3 (NGG1p interacting factor 3) CTY05_01085 PF13180 PDZ domain CTY05_01086 PF12627 Probable RNA and SrmB- binding site of polymerase A CTY05_01086 PF01743 Poly A polymerase head domain CTY05_01087 PF00390 Malic enzyme, N-terminal domain CTY05_01087 PF01515 Phosphate acetyl/butaryl transferase CTY05_01087 PF03949 Malic enzyme, NAD binding domain CTY05_01088 PF00563 EAL domain CTY05_01088 PF03707 Bacterial signalling protein N terminal repeat CTY05_01088 PF00990 Diguanylate cyclase, GGDEF domain CTY05_01089 PF04452 RNA methyltransferase CTY05_01090 PF02219 Methylenetetrahydrofolate reductase CTY05_01091 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CTY05_01091 PF05221 S-adenosyl-L-homocysteine hydrolase CTY05_01094 PF09317 Domain of unknown function (DUF1974) CTY05_01094 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01094 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01095 PF04055 Radical SAM superfamily CTY05_01096 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTY05_01096 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01099 PF07690 Major Facilitator Superfamily CTY05_01101 PF00557 Metallopeptidase family M24 CTY05_01102 PF00318 Ribosomal protein S2 CTY05_01103 PF00889 Elongation factor TS CTY05_01105 PF12833 Helix-turn-helix domain CTY05_01109 PF05036 Sporulation related domain CTY05_01109 PF03330 Lytic transglycolase CTY05_01110 PF13406 Transglycosylase SLT domain CTY05_01111 PF01098 Cell cycle protein CTY05_01113 PF14489 QueF-like protein CTY05_01113 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CTY05_01114 PF01061 ABC-2 type transporter CTY05_01115 PF00005 ABC transporter CTY05_01120 PF00464 Serine hydroxymethyltransferase CTY05_01121 PF02321 Outer membrane efflux protein CTY05_01122 PF00873 AcrB/AcrD/AcrF family CTY05_01123 PF13533 Biotin-lipoyl like CTY05_01124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01124 PF03466 LysR substrate binding domain CTY05_01125 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTY05_01126 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01127 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01128 PF00005 ABC transporter CTY05_01129 PF00893 Small Multidrug Resistance protein CTY05_01130 PF00037 4Fe-4S binding domain CTY05_01132 PF00392 Bacterial regulatory proteins, gntR family CTY05_01132 PF00155 Aminotransferase class I and II CTY05_01133 PF02567 Phenazine biosynthesis-like protein CTY05_01134 PF00175 Oxidoreductase NAD-binding domain CTY05_01134 PF00970 Oxidoreductase FAD-binding domain CTY05_01135 PF18389 TrmO C-terminal domain CTY05_01135 PF01980 tRNA-methyltransferase O CTY05_01137 PF00437 Type II/IV secretion system protein CTY05_01139 PF00072 Response regulator receiver domain CTY05_01139 PF00486 Transcriptional regulatory protein, C terminal CTY05_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_01140 PF00512 His Kinase A (phospho-acceptor) domain CTY05_01140 PF08521 Two-component sensor kinase N-terminal CTY05_01142 PF00293 NUDIX domain CTY05_01144 PF00905 Penicillin binding protein transpeptidase domain CTY05_01144 PF00912 Transglycosylase CTY05_01144 PF14814 Bifunctional transglycosylase second domain CTY05_01145 PF01513 ATP-NAD kinase CTY05_01146 PF07023 Protein of unknown function (DUF1315) CTY05_01147 PF00591 Glycosyl transferase family, a/b domain CTY05_01147 PF02885 Glycosyl transferase family, helical bundle domain CTY05_01148 PF00375 Sodium:dicarboxylate symporter family CTY05_01149 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01149 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_01149 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01150 PF00756 Putative esterase CTY05_01151 PF00800 Prephenate dehydratase CTY05_01151 PF01817 Chorismate mutase type II CTY05_01151 PF01842 ACT domain CTY05_01152 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CTY05_01154 PF01546 Peptidase family M20/M25/M40 CTY05_01154 PF07687 Peptidase dimerisation domain CTY05_01155 PF00753 Metallo-beta-lactamase superfamily CTY05_01157 PF03883 Peroxide stress protein YaaA CTY05_01158 PF05690 Thiazole biosynthesis protein ThiG CTY05_01160 PF04241 Protein of unknown function (DUF423) CTY05_01161 PF04545 Sigma-70, region 4 CTY05_01161 PF00140 Sigma-70 factor, region 1.2 CTY05_01161 PF04542 Sigma-70 region 2 CTY05_01163 PF00313 'Cold-shock' DNA-binding domain CTY05_01164 PF00270 DEAD/DEAH box helicase CTY05_01164 PF00271 Helicase conserved C-terminal domain CTY05_01166 PF00881 Nitroreductase family CTY05_01167 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CTY05_01167 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CTY05_01171 PF01180 Dihydroorotate dehydrogenase CTY05_01172 PF02674 Colicin V production protein CTY05_01173 PF00156 Phosphoribosyl transferase domain CTY05_01176 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTY05_01176 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTY05_01177 PF01435 Peptidase family M48 CTY05_01178 PF09424 Yqey-like protein CTY05_01179 PF01165 Ribosomal protein S21 CTY05_01180 PF00814 Glycoprotease family CTY05_01184 PF00069 Protein kinase domain CTY05_01189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01189 PF03466 LysR substrate binding domain CTY05_01190 PF00202 Aminotransferase class-III CTY05_01191 PF00171 Aldehyde dehydrogenase family CTY05_01192 PF00324 Amino acid permease CTY05_01198 PF04076 Bacterial OB fold (BOF) protein CTY05_01203 PF00561 alpha/beta hydrolase fold CTY05_01204 PF03616 Sodium/glutamate symporter CTY05_01206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01206 PF03466 LysR substrate binding domain CTY05_01207 PF00248 Aldo/keto reductase family CTY05_01208 PF00106 short chain dehydrogenase CTY05_01211 PF00392 Bacterial regulatory proteins, gntR family CTY05_01211 PF07729 FCD domain CTY05_01223 PF00083 Sugar (and other) transporter CTY05_01223 PF08946 Osmosensory transporter coiled coil CTY05_01227 PF04403 Paraquat-inducible protein A CTY05_01228 PF02470 MlaD protein CTY05_01230 PF00576 HIUase/Transthyretin family CTY05_01232 PF00486 Transcriptional regulatory protein, C terminal CTY05_01232 PF00072 Response regulator receiver domain CTY05_01233 PF00512 His Kinase A (phospho-acceptor) domain CTY05_01233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_01233 PF00672 HAMP domain CTY05_01241 PF08521 Two-component sensor kinase N-terminal CTY05_01241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_01241 PF00512 His Kinase A (phospho-acceptor) domain CTY05_01242 PF00072 Response regulator receiver domain CTY05_01242 PF00486 Transcriptional regulatory protein, C terminal CTY05_01246 PF01177 Asp/Glu/Hydantoin racemase CTY05_01247 PF00892 EamA-like transporter family CTY05_01248 PF07995 Glucose / Sorbosone dehydrogenase CTY05_01252 PF00375 Sodium:dicarboxylate symporter family CTY05_01254 PF00753 Metallo-beta-lactamase superfamily CTY05_01254 PF16123 Hydroxyacylglutathione hydrolase C-terminus CTY05_01255 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01256 PF00005 ABC transporter CTY05_01256 PF09383 NIL domain CTY05_01257 PF03180 NLPA lipoprotein CTY05_01258 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CTY05_01258 PF02843 Phosphoribosylglycinamide synthetase, C domain CTY05_01258 PF02844 Phosphoribosylglycinamide synthetase, N domain CTY05_01259 PF01808 AICARFT/IMPCHase bienzyme CTY05_01259 PF02142 MGS-like domain CTY05_01260 PF02954 Bacterial regulatory protein, Fis family CTY05_01264 PF01134 Glucose inhibited division protein A CTY05_01264 PF13932 GidA associated domain CTY05_01266 PF14403 Circularly permuted ATP-grasp type 2 CTY05_01268 PF08379 Bacterial transglutaminase-like N-terminal region CTY05_01268 PF01841 Transglutaminase-like superfamily CTY05_01270 PF01168 Alanine racemase, N-terminal domain CTY05_01270 PF00842 Alanine racemase, C-terminal domain CTY05_01271 PF03796 DnaB-like helicase C terminal domain CTY05_01271 PF00772 DnaB-like helicase N terminal domain CTY05_01272 PF01281 Ribosomal protein L9, N-terminal domain CTY05_01272 PF03948 Ribosomal protein L9, C-terminal domain CTY05_01273 PF01084 Ribosomal protein S18 CTY05_01274 PF01250 Ribosomal protein S6 CTY05_01275 PF01040 UbiA prenyltransferase family CTY05_01276 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CTY05_01277 PF00510 Cytochrome c oxidase subunit III CTY05_01278 PF00115 Cytochrome C and Quinol oxidase polypeptide I CTY05_01279 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CTY05_01279 PF06481 COX Aromatic Rich Motif CTY05_01281 PF00391 PEP-utilising enzyme, mobile domain CTY05_01281 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CTY05_01281 PF02896 PEP-utilising enzyme, TIM barrel domain CTY05_01282 PF03618 Kinase/pyrophosphorylase CTY05_01284 PF01522 Polysaccharide deacetylase CTY05_01284 PF14883 Hypothetical glycosyl hydrolase family 13 CTY05_01285 PF00535 Glycosyl transferase family 2 CTY05_01286 PF13994 PgaD-like protein CTY05_01288 PF00296 Luciferase-like monooxygenase CTY05_01291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01291 PF03466 LysR substrate binding domain CTY05_01293 PF00472 RF-1 domain CTY05_01293 PF03462 PCRF domain CTY05_01294 PF17827 PrmC N-terminal domain CTY05_01294 PF13847 Methyltransferase domain CTY05_01295 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01296 PF09084 NMT1/THI5 like CTY05_01297 PF12833 Helix-turn-helix domain CTY05_01298 PF00106 short chain dehydrogenase CTY05_01299 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01299 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01299 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_01300 PF00501 AMP-binding enzyme CTY05_01300 PF13193 AMP-binding enzyme C-terminal domain CTY05_01301 PF01613 Flavin reductase like domain CTY05_01302 PF00899 ThiF family CTY05_01303 PF03109 ABC1 family CTY05_01306 PF03814 Potassium-transporting ATPase A subunit CTY05_01308 PF02669 K+-transporting ATPase, c chain CTY05_01309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_01309 PF13493 Domain of unknown function (DUF4118) CTY05_01309 PF00512 His Kinase A (phospho-acceptor) domain CTY05_01309 PF02702 Osmosensitive K+ channel His kinase sensor domain CTY05_01310 PF00486 Transcriptional regulatory protein, C terminal CTY05_01310 PF00072 Response regulator receiver domain CTY05_01311 PF00120 Glutamine synthetase, catalytic domain CTY05_01313 PF03232 Ubiquinone biosynthesis protein COQ7 CTY05_01314 PF07690 Major Facilitator Superfamily CTY05_01315 PF17243 POTRA domain TamA domain 1 CTY05_01315 PF07244 Surface antigen variable number repeat CTY05_01315 PF01103 Surface antigen CTY05_01318 PF11791 Aconitate B N-terminal domain CTY05_01318 PF00330 Aconitase family (aconitate hydratase) CTY05_01318 PF06434 Aconitate hydratase 2 N-terminus CTY05_01320 PF00520 Ion transport protein CTY05_01320 PF00027 Cyclic nucleotide-binding domain CTY05_01321 PF07690 Major Facilitator Superfamily CTY05_01324 PF03466 LysR substrate binding domain CTY05_01324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01325 PF04284 Protein of unknown function (DUF441) CTY05_01327 PF01479 S4 domain CTY05_01327 PF00849 RNA pseudouridylate synthase CTY05_01330 PF01479 S4 domain CTY05_01330 PF00849 RNA pseudouridylate synthase CTY05_01331 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CTY05_01332 PF01119 DNA mismatch repair protein, C-terminal domain CTY05_01332 PF08676 MutL C terminal dimerisation domain CTY05_01334 PF17209 Hfq protein CTY05_01336 PF00881 Nitroreductase family CTY05_01337 PF00149 Calcineurin-like phosphoesterase CTY05_01338 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CTY05_01339 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTY05_01339 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CTY05_01340 PF00958 GMP synthase C terminal domain CTY05_01340 PF00117 Glutamine amidotransferase class-I CTY05_01340 PF02540 NAD synthase CTY05_01341 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CTY05_01342 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CTY05_01343 PF13520 Amino acid permease CTY05_01344 PF00171 Aldehyde dehydrogenase family CTY05_01347 PF00465 Iron-containing alcohol dehydrogenase CTY05_01348 PF05970 PIF1-like helicase CTY05_01348 PF14493 Helix-turn-helix domain CTY05_01350 PF02110 Hydroxyethylthiazole kinase family CTY05_01353 PF01433 Peptidase family M1 domain CTY05_01353 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CTY05_01353 PF11940 Domain of unknown function (DUF3458) Ig-like fold CTY05_01356 PF13953 PapC C-terminal domain CTY05_01356 PF00577 Outer membrane usher protein CTY05_01356 PF13954 PapC N-terminal domain CTY05_01361 PF01817 Chorismate mutase type II CTY05_01362 PF01037 Lrp/AsnC ligand binding domain CTY05_01364 PF02224 Cytidylate kinase CTY05_01367 PF00440 Bacterial regulatory proteins, tetR family CTY05_01368 PF07715 TonB-dependent Receptor Plug Domain CTY05_01368 PF00593 TonB dependent receptor CTY05_01369 PF00924 Mechanosensitive ion channel CTY05_01375 PF07715 TonB-dependent Receptor Plug Domain CTY05_01375 PF00593 TonB dependent receptor CTY05_01379 PF00005 ABC transporter CTY05_01379 PF12848 ABC transporter CTY05_01380 PF00582 Universal stress protein family CTY05_01384 PF00689 Cation transporting ATPase, C-terminus CTY05_01384 PF00690 Cation transporter/ATPase, N-terminus CTY05_01385 PF02308 MgtC family CTY05_01386 PF03594 Benzoate membrane transport protein CTY05_01387 PF01037 Lrp/AsnC ligand binding domain CTY05_01388 PF01810 LysE type translocator CTY05_01390 PF03466 LysR substrate binding domain CTY05_01390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01392 PF00108 Thiolase, N-terminal domain CTY05_01392 PF02803 Thiolase, C-terminal domain CTY05_01397 PF07690 Major Facilitator Superfamily CTY05_01398 PF12169 DNA polymerase III subunits gamma and tau domain III CTY05_01398 PF12170 DNA polymerase III tau subunit V interacting with alpha CTY05_01398 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CTY05_01400 PF04185 Phosphoesterase family CTY05_01400 PF05506 Domain of unknown function (DUF756) CTY05_01401 PF03061 Thioesterase superfamily CTY05_01402 PF00465 Iron-containing alcohol dehydrogenase CTY05_01404 PF01451 Low molecular weight phosphotyrosine protein phosphatase CTY05_01405 PF01565 FAD binding domain CTY05_01405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CTY05_01408 PF01645 Conserved region in glutamate synthase CTY05_01412 PF12832 MFS_1 like family CTY05_01414 PF00289 Biotin carboxylase, N-terminal domain CTY05_01414 PF02785 Biotin carboxylase C-terminal domain CTY05_01414 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTY05_01415 PF00364 Biotin-requiring enzyme CTY05_01416 PF01220 Dehydroquinase class II CTY05_01417 PF11799 impB/mucB/samB family C-terminal domain CTY05_01417 PF13438 Domain of unknown function (DUF4113) CTY05_01417 PF00817 impB/mucB/samB family CTY05_01418 PF00005 ABC transporter CTY05_01419 PF00486 Transcriptional regulatory protein, C terminal CTY05_01419 PF00072 Response regulator receiver domain CTY05_01421 PF18267 Rubredoxin NAD+ reductase C-terminal domain CTY05_01421 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01421 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTY05_01421 PF13806 Rieske-like [2Fe-2S] domain CTY05_01421 PF04324 BFD-like [2Fe-2S] binding domain CTY05_01421 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTY05_01422 PF18267 Rubredoxin NAD+ reductase C-terminal domain CTY05_01422 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01422 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTY05_01422 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTY05_01422 PF04324 BFD-like [2Fe-2S] binding domain CTY05_01423 PF01568 Molydopterin dinucleotide binding domain CTY05_01423 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTY05_01423 PF00384 Molybdopterin oxidoreductase CTY05_01423 PF04324 BFD-like [2Fe-2S] binding domain CTY05_01424 PF12804 MobA-like NTP transferase domain CTY05_01425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTY05_01425 PF00384 Molybdopterin oxidoreductase CTY05_01425 PF01568 Molydopterin dinucleotide binding domain CTY05_01426 PF06463 Molybdenum Cofactor Synthesis C CTY05_01426 PF04055 Radical SAM superfamily CTY05_01428 PF02391 MoaE protein CTY05_01429 PF01967 MoaC family CTY05_01429 PF00994 Probable molybdopterin binding domain CTY05_01430 PF03454 MoeA C-terminal region (domain IV) CTY05_01430 PF00994 Probable molybdopterin binding domain CTY05_01430 PF03453 MoeA N-terminal region (domain I and II) CTY05_01431 PF01638 HxlR-like helix-turn-helix CTY05_01432 PF00155 Aminotransferase class I and II CTY05_01432 PF00392 Bacterial regulatory proteins, gntR family CTY05_01433 PF00892 EamA-like transporter family CTY05_01437 PF02635 DsrE/DsrF-like family CTY05_01438 PF16363 GDP-mannose 4,6 dehydratase CTY05_01439 PF00206 Lyase CTY05_01439 PF10415 Fumarase C C-terminus CTY05_01443 PF01266 FAD dependent oxidoreductase CTY05_01445 PF02542 YgbB family CTY05_01447 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTY05_01447 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTY05_01448 PF00440 Bacterial regulatory proteins, tetR family CTY05_01449 PF00158 Sigma-54 interaction domain CTY05_01449 PF00072 Response regulator receiver domain CTY05_01449 PF02954 Bacterial regulatory protein, Fis family CTY05_01450 PF00512 His Kinase A (phospho-acceptor) domain CTY05_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_01450 PF00989 PAS fold CTY05_01451 PF04055 Radical SAM superfamily CTY05_01451 PF18693 TRAM domain CTY05_01451 PF00919 Uncharacterized protein family UPF0004 CTY05_01452 PF00696 Amino acid kinase family CTY05_01453 PF01765 Ribosome recycling factor CTY05_01454 PF01255 Putative undecaprenyl diphosphate synthase CTY05_01456 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CTY05_01456 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CTY05_01456 PF13288 DXP reductoisomerase C-terminal domain CTY05_01457 PF13180 PDZ domain CTY05_01457 PF17820 PDZ domain CTY05_01457 PF02163 Peptidase family M50 CTY05_01458 PF01103 Surface antigen CTY05_01458 PF07244 Surface antigen variable number repeat CTY05_01460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CTY05_01460 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_01461 PF07977 FabA-like domain CTY05_01462 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CTY05_01462 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_01464 PF02631 RecX family CTY05_01465 PF00154 recA bacterial DNA recombination protein CTY05_01466 PF01479 S4 domain CTY05_01467 PF13419 Haloacid dehalogenase-like hydrolase CTY05_01472 PF01037 Lrp/AsnC ligand binding domain CTY05_01473 PF00266 Aminotransferase class-V CTY05_01474 PF00324 Amino acid permease CTY05_01476 PF00082 Subtilase family CTY05_01476 PF05922 Peptidase inhibitor I9 CTY05_01477 PF00916 Sulfate permease family CTY05_01477 PF01740 STAS domain CTY05_01478 PF02586 SOS response associated peptidase (SRAP) CTY05_01479 PF07995 Glucose / Sorbosone dehydrogenase CTY05_01481 PF00563 EAL domain CTY05_01481 PF03707 Bacterial signalling protein N terminal repeat CTY05_01481 PF00990 Diguanylate cyclase, GGDEF domain CTY05_01485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTY05_01485 PF02378 Phosphotransferase system, EIIC CTY05_01486 PF00294 pfkB family carbohydrate kinase CTY05_01487 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTY05_01487 PF00381 PTS HPr component phosphorylation site CTY05_01487 PF02896 PEP-utilising enzyme, TIM barrel domain CTY05_01487 PF00391 PEP-utilising enzyme, mobile domain CTY05_01487 PF05524 PEP-utilising enzyme, N-terminal CTY05_01492 PF05525 Branched-chain amino acid transport protein CTY05_01493 PF00557 Metallopeptidase family M24 CTY05_01494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01494 PF03466 LysR substrate binding domain CTY05_01496 PF00462 Glutaredoxin CTY05_01497 PF00202 Aminotransferase class-III CTY05_01498 PF00478 IMP dehydrogenase / GMP reductase domain CTY05_01498 PF00571 CBS domain CTY05_01503 PF02881 SRP54-type protein, helical bundle domain CTY05_01503 PF00448 SRP54-type protein, GTPase domain CTY05_01505 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CTY05_01507 PF08173 Membrane bound YbgT-like protein CTY05_01508 PF02322 Cytochrome bd terminal oxidase subunit II CTY05_01509 PF01654 Cytochrome bd terminal oxidase subunit I CTY05_01511 PF07290 Protein of unknown function (DUF1449) CTY05_01513 PF00294 pfkB family carbohydrate kinase CTY05_01514 PF00593 TonB dependent receptor CTY05_01514 PF07715 TonB-dependent Receptor Plug Domain CTY05_01515 PF05193 Peptidase M16 inactive domain CTY05_01515 PF08367 Peptidase M16C associated CTY05_01515 PF00675 Insulinase (Peptidase family M16) CTY05_01516 PF02253 Phospholipase A1 CTY05_01517 PF02386 Cation transport protein CTY05_01518 PF02080 TrkA-C domain CTY05_01518 PF02254 TrkA-N domain CTY05_01519 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_01519 PF00585 C-terminal regulatory domain of Threonine dehydratase CTY05_01520 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CTY05_01523 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTY05_01523 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTY05_01525 PF02617 ATP-dependent Clp protease adaptor protein ClpS CTY05_01526 PF10431 C-terminal, D2-small domain, of ClpB protein CTY05_01526 PF02861 Clp amino terminal domain, pathogenicity island component CTY05_01526 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_01526 PF07724 AAA domain (Cdc48 subfamily) CTY05_01526 PF17871 AAA lid domain CTY05_01527 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CTY05_01528 PF00793 DAHP synthetase I family CTY05_01531 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01531 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_01537 PF00117 Glutamine amidotransferase class-I CTY05_01537 PF06418 CTP synthase N-terminus CTY05_01538 PF00793 DAHP synthetase I family CTY05_01539 PF03952 Enolase, N-terminal domain CTY05_01539 PF00113 Enolase, C-terminal TIM barrel domain CTY05_01540 PF04239 Protein of unknown function (DUF421) CTY05_01541 PF04977 Septum formation initiator CTY05_01542 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTY05_01543 PF01144 Coenzyme A transferase CTY05_01544 PF01144 Coenzyme A transferase CTY05_01545 PF00108 Thiolase, N-terminal domain CTY05_01545 PF02803 Thiolase, C-terminal domain CTY05_01546 PF10397 Adenylosuccinate lyase C-terminus CTY05_01546 PF00206 Lyase CTY05_01547 PF00561 alpha/beta hydrolase fold CTY05_01548 PF07690 Major Facilitator Superfamily CTY05_01549 PF02627 Carboxymuconolactone decarboxylase family CTY05_01550 PF00775 Dioxygenase CTY05_01550 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CTY05_01551 PF00775 Dioxygenase CTY05_01552 PF01487 Type I 3-dehydroquinase CTY05_01553 PF05048 Periplasmic copper-binding protein (NosD) CTY05_01554 PF04966 Carbohydrate-selective porin, OprB family CTY05_01555 PF01011 PQQ enzyme repeat CTY05_01555 PF13360 PQQ-like domain CTY05_01557 PF04143 Sulphur transport CTY05_01559 PF00753 Metallo-beta-lactamase superfamily CTY05_01560 PF09339 IclR helix-turn-helix domain CTY05_01560 PF01614 Bacterial transcriptional regulator CTY05_01561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01561 PF03466 LysR substrate binding domain CTY05_01562 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01562 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01562 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_01565 PF00106 short chain dehydrogenase CTY05_01567 PF07690 Major Facilitator Superfamily CTY05_01569 PF01425 Amidase CTY05_01570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01573 PF00355 Rieske [2Fe-2S] domain CTY05_01573 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTY05_01576 PF00175 Oxidoreductase NAD-binding domain CTY05_01576 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_01577 PF01613 Flavin reductase like domain CTY05_01578 PF02311 AraC-like ligand binding domain CTY05_01578 PF12833 Helix-turn-helix domain CTY05_01579 PF02728 Copper amine oxidase, N3 domain CTY05_01579 PF02727 Copper amine oxidase, N2 domain CTY05_01579 PF01179 Copper amine oxidase, enzyme domain CTY05_01579 PF07833 Copper amine oxidase N-terminal domain CTY05_01581 PF00171 Aldehyde dehydrogenase family CTY05_01582 PF01804 Penicillin amidase CTY05_01583 PF12146 Serine aminopeptidase, S33 CTY05_01584 PF02803 Thiolase, C-terminal domain CTY05_01584 PF00108 Thiolase, N-terminal domain CTY05_01585 PF01144 Coenzyme A transferase CTY05_01586 PF01144 Coenzyme A transferase CTY05_01587 PF04444 Catechol dioxygenase N terminus CTY05_01587 PF00775 Dioxygenase CTY05_01588 PF02426 Muconolactone delta-isomerase CTY05_01589 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CTY05_01589 PF13378 Enolase C-terminal domain-like CTY05_01590 PF03466 LysR substrate binding domain CTY05_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01592 PF07729 FCD domain CTY05_01592 PF00392 Bacterial regulatory proteins, gntR family CTY05_01593 PF00920 Dehydratase family CTY05_01594 PF07690 Major Facilitator Superfamily CTY05_01596 PF00171 Aldehyde dehydrogenase family CTY05_01598 PF00561 alpha/beta hydrolase fold CTY05_01599 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01599 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_01600 PF00106 short chain dehydrogenase CTY05_01602 PF00376 MerR family regulatory protein CTY05_01602 PF09278 MerR, DNA binding CTY05_01604 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01606 PF12706 Beta-lactamase superfamily domain CTY05_01607 PF08359 YsiA-like protein, C-terminal region CTY05_01607 PF00440 Bacterial regulatory proteins, tetR family CTY05_01608 PF12833 Helix-turn-helix domain CTY05_01608 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTY05_01610 PF06314 Acetoacetate decarboxylase (ADC) CTY05_01612 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_01614 PF07995 Glucose / Sorbosone dehydrogenase CTY05_01617 PF00857 Isochorismatase family CTY05_01618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01618 PF03466 LysR substrate binding domain CTY05_01619 PF07995 Glucose / Sorbosone dehydrogenase CTY05_01620 PF00999 Sodium/hydrogen exchanger family CTY05_01620 PF02254 TrkA-N domain CTY05_01622 PF07687 Peptidase dimerisation domain CTY05_01622 PF01546 Peptidase family M20/M25/M40 CTY05_01631 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) CTY05_01632 PF07690 Major Facilitator Superfamily CTY05_01633 PF04909 Amidohydrolase CTY05_01636 PF08450 SMP-30/Gluconolactonase/LRE-like region CTY05_01638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01638 PF03466 LysR substrate binding domain CTY05_01641 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTY05_01641 PF00529 HlyD membrane-fusion protein of T1SS CTY05_01644 PF00171 Aldehyde dehydrogenase family CTY05_01645 PF00920 Dehydratase family CTY05_01647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01647 PF03466 LysR substrate binding domain CTY05_01648 PF01370 NAD dependent epimerase/dehydratase family CTY05_01649 PF07690 Major Facilitator Superfamily CTY05_01650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTY05_01650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTY05_01651 PF12833 Helix-turn-helix domain CTY05_01651 PF06719 AraC-type transcriptional regulator N-terminus CTY05_01652 PF14572 Phosphoribosyl synthetase-associated domain CTY05_01652 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CTY05_01653 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CTY05_01657 PF00196 Bacterial regulatory proteins, luxR family CTY05_01657 PF03472 Autoinducer binding domain CTY05_01658 PF01425 Amidase CTY05_01659 PF13533 Biotin-lipoyl like CTY05_01660 PF07690 Major Facilitator Superfamily CTY05_01665 PF01975 Survival protein SurE CTY05_01667 PF13291 ACT domain CTY05_01667 PF04607 Region found in RelA / SpoT proteins CTY05_01667 PF02824 TGS domain CTY05_01668 PF00271 Helicase conserved C-terminal domain CTY05_01668 PF04851 Type III restriction enzyme, res subunit CTY05_01668 PF02151 UvrB/uvrC motif CTY05_01668 PF17757 UvrB interaction domain CTY05_01668 PF12344 Ultra-violet resistance protein B CTY05_01673 PF13673 Acetyltransferase (GNAT) domain CTY05_01674 PF12146 Serine aminopeptidase, S33 CTY05_01675 PF03466 LysR substrate binding domain CTY05_01675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01678 PF12146 Serine aminopeptidase, S33 CTY05_01679 PF02311 AraC-like ligand binding domain CTY05_01679 PF12833 Helix-turn-helix domain CTY05_01681 PF00512 His Kinase A (phospho-acceptor) domain CTY05_01681 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_01681 PF00672 HAMP domain CTY05_01681 PF16527 Two-component sensor protein CpxA, periplasmic domain CTY05_01682 PF00072 Response regulator receiver domain CTY05_01682 PF00486 Transcriptional regulatory protein, C terminal CTY05_01683 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTY05_01683 PF00529 HlyD membrane-fusion protein of T1SS CTY05_01684 PF00873 AcrB/AcrD/AcrF family CTY05_01685 PF02321 Outer membrane efflux protein CTY05_01686 PF12146 Serine aminopeptidase, S33 CTY05_01687 PF00743 Flavin-binding monooxygenase-like CTY05_01689 PF01266 FAD dependent oxidoreductase CTY05_01693 PF16970 Type-1 fimbrial protein, A CTY05_01694 PF02753 Pili assembly chaperone PapD, C-terminal domain CTY05_01694 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CTY05_01695 PF13954 PapC N-terminal domain CTY05_01695 PF00577 Outer membrane usher protein CTY05_01695 PF13953 PapC C-terminal domain CTY05_01698 PF00107 Zinc-binding dehydrogenase CTY05_01698 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_01700 PF00199 Catalase CTY05_01703 PF13091 PLD-like domain CTY05_01707 PF01244 Membrane dipeptidase (Peptidase family M19) CTY05_01708 PF13186 Iron-sulfur cluster-binding domain CTY05_01708 PF04055 Radical SAM superfamily CTY05_01709 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CTY05_01710 PF03070 TENA/THI-4/PQQC family CTY05_01711 PF12706 Beta-lactamase superfamily domain CTY05_01712 PF17941 Polyphosphate kinase C-terminal domain 1 CTY05_01712 PF02503 Polyphosphate kinase middle domain CTY05_01712 PF13089 Polyphosphate kinase N-terminal domain CTY05_01712 PF13090 Polyphosphate kinase C-terminal domain 2 CTY05_01713 PF00149 Calcineurin-like phosphoesterase CTY05_01715 PF00550 Phosphopantetheine attachment site CTY05_01715 PF00857 Isochorismatase family CTY05_01716 PF00106 short chain dehydrogenase CTY05_01717 PF03459 TOBE domain CTY05_01717 PF00005 ABC transporter CTY05_01718 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01720 PF03459 TOBE domain CTY05_01721 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTY05_01721 PF00355 Rieske [2Fe-2S] domain CTY05_01722 PF00866 Ring hydroxylating beta subunit CTY05_01723 PF00175 Oxidoreductase NAD-binding domain CTY05_01723 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_01723 PF00970 Oxidoreductase FAD-binding domain CTY05_01724 PF14525 AraC-binding-like domain CTY05_01724 PF12833 Helix-turn-helix domain CTY05_01726 PF01613 Flavin reductase like domain CTY05_01729 PF01738 Dienelactone hydrolase family CTY05_01730 PF07690 Major Facilitator Superfamily CTY05_01731 PF12833 Helix-turn-helix domain CTY05_01731 PF06719 AraC-type transcriptional regulator N-terminus CTY05_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01735 PF03466 LysR substrate binding domain CTY05_01736 PF01144 Coenzyme A transferase CTY05_01737 PF01144 Coenzyme A transferase CTY05_01738 PF02667 Short chain fatty acid transporter CTY05_01739 PF00108 Thiolase, N-terminal domain CTY05_01739 PF02803 Thiolase, C-terminal domain CTY05_01740 PF03466 LysR substrate binding domain CTY05_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01741 PF03466 LysR substrate binding domain CTY05_01741 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01744 PF10415 Fumarase C C-terminus CTY05_01744 PF00206 Lyase CTY05_01745 PF07715 TonB-dependent Receptor Plug Domain CTY05_01745 PF00593 TonB dependent receptor CTY05_01746 PF00083 Sugar (and other) transporter CTY05_01749 PF00005 ABC transporter CTY05_01750 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01751 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CTY05_01756 PF02525 Flavodoxin-like fold CTY05_01757 PF01638 HxlR-like helix-turn-helix CTY05_01758 PF06445 GyrI-like small molecule binding domain CTY05_01758 PF12833 Helix-turn-helix domain CTY05_01761 PF01925 Sulfite exporter TauE/SafE CTY05_01762 PF04273 Putative phosphatase (DUF442) CTY05_01762 PF00753 Metallo-beta-lactamase superfamily CTY05_01763 PF00753 Metallo-beta-lactamase superfamily CTY05_01763 PF04273 Putative phosphatase (DUF442) CTY05_01764 PF00158 Sigma-54 interaction domain CTY05_01764 PF00072 Response regulator receiver domain CTY05_01764 PF02954 Bacterial regulatory protein, Fis family CTY05_01765 PF01062 Bestrophin, RFP-TM, chloride channel CTY05_01766 PF00107 Zinc-binding dehydrogenase CTY05_01766 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_01767 PF00106 short chain dehydrogenase CTY05_01768 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_01768 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTY05_01769 PF00364 Biotin-requiring enzyme CTY05_01769 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTY05_01769 PF02817 e3 binding domain CTY05_01770 PF02780 Transketolase, C-terminal domain CTY05_01770 PF02779 Transketolase, pyrimidine binding domain CTY05_01771 PF00676 Dehydrogenase E1 component CTY05_01772 PF04055 Radical SAM superfamily CTY05_01775 PF00990 Diguanylate cyclase, GGDEF domain CTY05_01775 PF08448 PAS fold CTY05_01776 PF01264 Chorismate synthase CTY05_01777 PF05175 Methyltransferase small domain CTY05_01778 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_01780 PF17862 AAA+ lid domain CTY05_01780 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_01780 PF01434 Peptidase family M41 CTY05_01782 PF05166 YcgL domain CTY05_01786 PF00570 HRDC domain CTY05_01786 PF01612 3'-5' exonuclease CTY05_01787 PF02132 RecR protein CTY05_01787 PF13662 Toprim domain CTY05_01788 PF02575 YbaB/EbfC DNA-binding family CTY05_01790 PF01053 Cys/Met metabolism PLP-dependent enzyme CTY05_01791 PF00561 alpha/beta hydrolase fold CTY05_01792 PF08241 Methyltransferase domain CTY05_01798 PF01230 HIT domain CTY05_01803 PF02684 Lipid-A-disaccharide synthetase CTY05_01804 PF07715 TonB-dependent Receptor Plug Domain CTY05_01804 PF00593 TonB dependent receptor CTY05_01808 PF01925 Sulfite exporter TauE/SafE CTY05_01809 PF00793 DAHP synthetase I family CTY05_01810 PF02654 Cobalamin-5-phosphate synthase CTY05_01812 PF00300 Histidine phosphatase superfamily (branch 1) CTY05_01813 PF02277 Phosphoribosyltransferase CTY05_01814 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CTY05_01816 PF13419 Haloacid dehalogenase-like hydrolase CTY05_01821 PF07715 TonB-dependent Receptor Plug Domain CTY05_01821 PF00593 TonB dependent receptor CTY05_01822 PF03737 Aldolase/RraA CTY05_01824 PF04183 IucA / IucC family CTY05_01824 PF06276 Ferric iron reductase FhuF-like transporter CTY05_01825 PF04183 IucA / IucC family CTY05_01825 PF06276 Ferric iron reductase FhuF-like transporter CTY05_01826 PF07690 Major Facilitator Superfamily CTY05_01827 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CTY05_01828 PF06276 Ferric iron reductase FhuF-like transporter CTY05_01828 PF04183 IucA / IucC family CTY05_01829 PF04073 Aminoacyl-tRNA editing domain CTY05_01831 PF03109 ABC1 family CTY05_01832 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01832 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01832 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_01833 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_01833 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01833 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01834 PF00487 Fatty acid desaturase CTY05_01835 PF12852 Cupin CTY05_01835 PF12833 Helix-turn-helix domain CTY05_01836 PF09312 SurA N-terminal domain CTY05_01836 PF00639 PPIC-type PPIASE domain CTY05_01837 PF00216 Bacterial DNA-binding protein CTY05_01840 PF02082 Transcriptional regulator CTY05_01841 PF00266 Aminotransferase class-V CTY05_01842 PF01592 NifU-like N terminal domain CTY05_01843 PF01521 Iron-sulphur cluster biosynthesis CTY05_01844 PF00226 DnaJ domain CTY05_01844 PF07743 HSCB C-terminal oligomerisation domain CTY05_01845 PF00012 Hsp70 protein CTY05_01846 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_01847 PF00211 Adenylate and Guanylate cyclase catalytic domain CTY05_01849 PF02559 CarD-like/TRCF domain CTY05_01849 PF03461 TRCF domain CTY05_01849 PF00271 Helicase conserved C-terminal domain CTY05_01849 PF17757 UvrB interaction domain CTY05_01849 PF00270 DEAD/DEAH box helicase CTY05_01853 PF03737 Aldolase/RraA CTY05_01854 PF13460 NAD(P)H-binding CTY05_01855 PF01649 Ribosomal protein S20 CTY05_01857 PF00459 Inositol monophosphatase family CTY05_01860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTY05_01860 PF00005 ABC transporter CTY05_01861 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01862 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01863 PF01432 Peptidase family M3 CTY05_01867 PF07715 TonB-dependent Receptor Plug Domain CTY05_01867 PF00593 TonB dependent receptor CTY05_01868 PF03544 Gram-negative bacterial TonB protein C-terminal CTY05_01869 PF01618 MotA/TolQ/ExbB proton channel family CTY05_01870 PF02472 Biopolymer transport protein ExbD/TolR CTY05_01871 PF02472 Biopolymer transport protein ExbD/TolR CTY05_01872 PF01274 Malate synthase CTY05_01873 PF03969 AFG1-like ATPase CTY05_01875 PF00743 Flavin-binding monooxygenase-like CTY05_01877 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CTY05_01879 PF00216 Bacterial DNA-binding protein CTY05_01880 PF00575 S1 RNA binding domain CTY05_01881 PF02224 Cytidylate kinase CTY05_01883 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTY05_01885 PF03167 Uracil DNA glycosylase superfamily CTY05_01887 PF03934 Type II secretion system (T2SS), protein K CTY05_01888 PF11612 Type II secretion system (T2SS), protein J CTY05_01888 PF07963 Prokaryotic N-terminal methylation motif CTY05_01889 PF02501 Type II secretion system (T2SS), protein I CTY05_01889 PF07963 Prokaryotic N-terminal methylation motif CTY05_01892 PF01026 TatD related DNase CTY05_01894 PF09115 DNA polymerase III, delta subunit, C terminal CTY05_01895 PF02348 Cytidylyltransferase CTY05_01896 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CTY05_01897 PF00005 ABC transporter CTY05_01897 PF00664 ABC transporter transmembrane region CTY05_01899 PF01618 MotA/TolQ/ExbB proton channel family CTY05_01900 PF17762 HTH domain found in ParB protein CTY05_01900 PF02195 ParB-like nuclease domain CTY05_01901 PF13614 AAA domain CTY05_01902 PF02527 rRNA small subunit methyltransferase G CTY05_01903 PF00483 Nucleotidyl transferase CTY05_01904 PF01636 Phosphotransferase enzyme family CTY05_01905 PF04453 LPS transport system D CTY05_01905 PF03968 OstA-like protein CTY05_01906 PF09312 SurA N-terminal domain CTY05_01906 PF00639 PPIC-type PPIASE domain CTY05_01907 PF01116 Fructose-bisphosphate aldolase class-II CTY05_01909 PF00162 Phosphoglycerate kinase CTY05_01911 PF02545 Maf-like protein CTY05_01912 PF08007 Cupin superfamily protein CTY05_01915 PF00375 Sodium:dicarboxylate symporter family CTY05_01916 PF06912 Protein of unknown function (DUF1275) CTY05_01917 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CTY05_01918 PF00005 ABC transporter CTY05_01918 PF00664 ABC transporter transmembrane region CTY05_01920 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTY05_01920 PF12833 Helix-turn-helix domain CTY05_01921 PF01597 Glycine cleavage H-protein CTY05_01922 PF02146 Sir2 family CTY05_01923 PF00474 Sodium:solute symporter family CTY05_01924 PF01037 Lrp/AsnC ligand binding domain CTY05_01925 PF14850 DNA-binding domain of Proline dehydrogenase CTY05_01925 PF00171 Aldehyde dehydrogenase family CTY05_01925 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CTY05_01925 PF01619 Proline dehydrogenase CTY05_01926 PF04229 GrpB protein CTY05_01927 PF05958 tRNA (Uracil-5-)-methyltransferase CTY05_01929 PF09992 Phosphodiester glycosidase CTY05_01931 PF04264 YceI-like domain CTY05_01933 PF02779 Transketolase, pyrimidine binding domain CTY05_01933 PF02780 Transketolase, C-terminal domain CTY05_01933 PF00456 Transketolase, thiamine diphosphate binding domain CTY05_01934 PF02773 S-adenosylmethionine synthetase, C-terminal domain CTY05_01934 PF02772 S-adenosylmethionine synthetase, central domain CTY05_01934 PF00438 S-adenosylmethionine synthetase, N-terminal domain CTY05_01938 PF00905 Penicillin binding protein transpeptidase domain CTY05_01941 PF02075 Crossover junction endodeoxyribonuclease RuvC CTY05_01942 PF03853 YjeF-related protein N-terminus CTY05_01942 PF01256 Carbohydrate kinase CTY05_01943 PF08331 Domain of unknown function (DUF1730) CTY05_01944 PF06968 Biotin and Thiamin Synthesis associated domain CTY05_01944 PF04055 Radical SAM superfamily CTY05_01947 PF16970 Type-1 fimbrial protein, A CTY05_01948 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CTY05_01948 PF02753 Pili assembly chaperone PapD, C-terminal domain CTY05_01949 PF00577 Outer membrane usher protein CTY05_01949 PF13953 PapC C-terminal domain CTY05_01949 PF13954 PapC N-terminal domain CTY05_01953 PF00892 EamA-like transporter family CTY05_01955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTY05_01957 PF03466 LysR substrate binding domain CTY05_01957 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_01962 PF00440 Bacterial regulatory proteins, tetR family CTY05_01964 PF01709 Transcriptional regulator CTY05_01965 PF01037 Lrp/AsnC ligand binding domain CTY05_01967 PF00005 ABC transporter CTY05_01968 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01969 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01972 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTY05_01972 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_01974 PF00296 Luciferase-like monooxygenase CTY05_01975 PF03180 NLPA lipoprotein CTY05_01976 PF03180 NLPA lipoprotein CTY05_01977 PF00005 ABC transporter CTY05_01977 PF09383 NIL domain CTY05_01978 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_01979 PF01926 50S ribosome-binding GTPase CTY05_01979 PF06071 Protein of unknown function (DUF933) CTY05_01984 PF03591 AzlC protein CTY05_01985 PF05437 Branched-chain amino acid transport protein (AzlD) CTY05_01987 PF02222 ATP-grasp domain CTY05_01988 PF01966 HD domain CTY05_01988 PF01909 Nucleotidyltransferase domain CTY05_01988 PF08335 GlnD PII-uridylyltransferase CTY05_01989 PF00155 Aminotransferase class I and II CTY05_01991 PF12833 Helix-turn-helix domain CTY05_01991 PF12852 Cupin CTY05_01992 PF00255 Glutathione peroxidase CTY05_01993 PF01641 SelR domain CTY05_01994 PF00155 Aminotransferase class I and II CTY05_01995 PF00375 Sodium:dicarboxylate symporter family CTY05_01996 PF00710 Asparaginase, N-terminal CTY05_01996 PF17763 Glutaminase/Asparaginase C-terminal domain CTY05_01997 PF14579 Helix-hairpin-helix motif CTY05_01997 PF07733 Bacterial DNA polymerase III alpha NTPase domain CTY05_01997 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CTY05_01997 PF01336 OB-fold nucleic acid binding domain CTY05_01997 PF02811 PHP domain CTY05_01998 PF00588 SpoU rRNA Methylase family CTY05_01999 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_02002 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02002 PF13192 Thioredoxin domain CTY05_02005 PF03466 LysR substrate binding domain CTY05_02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02006 PF01758 Sodium Bile acid symporter family CTY05_02007 PF01022 Bacterial regulatory protein, arsR family CTY05_02008 PF03960 ArsC family CTY05_02010 PF13382 Adenine deaminase C-terminal domain CTY05_02010 PF01979 Amidohydrolase family CTY05_02012 PF03466 LysR substrate binding domain CTY05_02012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02014 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTY05_02015 PF01177 Asp/Glu/Hydantoin racemase CTY05_02016 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CTY05_02017 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_02018 PF00005 ABC transporter CTY05_02019 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CTY05_02021 PF00083 Sugar (and other) transporter CTY05_02022 PF00296 Luciferase-like monooxygenase CTY05_02025 PF01654 Cytochrome bd terminal oxidase subunit I CTY05_02026 PF02322 Cytochrome bd terminal oxidase subunit II CTY05_02028 PF00392 Bacterial regulatory proteins, gntR family CTY05_02028 PF00155 Aminotransferase class I and II CTY05_02029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02029 PF03466 LysR substrate binding domain CTY05_02032 PF00698 Acyl transferase domain CTY05_02033 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CTY05_02035 PF01039 Carboxyl transferase domain CTY05_02036 PF06857 Malonate decarboxylase delta subunit (MdcD) CTY05_02037 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CTY05_02038 PF16957 Malonate decarboxylase, alpha subunit, transporter CTY05_02039 PF07690 Major Facilitator Superfamily CTY05_02042 PF00392 Bacterial regulatory proteins, gntR family CTY05_02043 PF04172 LrgB-like family CTY05_02044 PF03788 LrgA family CTY05_02045 PF03466 LysR substrate binding domain CTY05_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02046 PF02798 Glutathione S-transferase, N-terminal domain CTY05_02046 PF14834 Glutathione S-transferase, C-terminal domain CTY05_02047 PF02798 Glutathione S-transferase, N-terminal domain CTY05_02048 PF03466 LysR substrate binding domain CTY05_02048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02050 PF00581 Rhodanese-like domain CTY05_02051 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_02053 PF00266 Aminotransferase class-V CTY05_02054 PF01810 LysE type translocator CTY05_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02055 PF03466 LysR substrate binding domain CTY05_02056 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTY05_02057 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTY05_02058 PF00005 ABC transporter CTY05_02059 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_02060 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_02062 PF00072 Response regulator receiver domain CTY05_02063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_02063 PF00072 Response regulator receiver domain CTY05_02063 PF00512 His Kinase A (phospho-acceptor) domain CTY05_02063 PF09308 LuxQ, periplasmic CTY05_02065 PF01037 Lrp/AsnC ligand binding domain CTY05_02065 PF13404 AsnC-type helix-turn-helix domain CTY05_02067 PF00717 Peptidase S24-like CTY05_02072 PF00199 Catalase CTY05_02072 PF06628 Catalase-related immune-responsive CTY05_02072 PF18011 C-terminal domain found in long catalases CTY05_02074 PF18146 Damage-inducible protein CinA KH domain CTY05_02074 PF02464 Competence-damaged protein CTY05_02074 PF00994 Probable molybdopterin binding domain CTY05_02082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02082 PF03466 LysR substrate binding domain CTY05_02086 PF00501 AMP-binding enzyme CTY05_02086 PF13193 AMP-binding enzyme C-terminal domain CTY05_02087 PF00440 Bacterial regulatory proteins, tetR family CTY05_02088 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_02088 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_02088 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_02089 PF01039 Carboxyl transferase domain CTY05_02090 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02091 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTY05_02091 PF00364 Biotin-requiring enzyme CTY05_02091 PF00289 Biotin carboxylase, N-terminal domain CTY05_02091 PF02785 Biotin carboxylase C-terminal domain CTY05_02092 PF00682 HMGL-like CTY05_02093 PF03466 LysR substrate binding domain CTY05_02093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02096 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_02096 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTY05_02096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_02096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_02098 PF07690 Major Facilitator Superfamily CTY05_02100 PF01144 Coenzyme A transferase CTY05_02101 PF01144 Coenzyme A transferase CTY05_02102 PF07690 Major Facilitator Superfamily CTY05_02103 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_02103 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_02103 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_02104 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02106 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTY05_02106 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTY05_02106 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CTY05_02107 PF00108 Thiolase, N-terminal domain CTY05_02107 PF02803 Thiolase, C-terminal domain CTY05_02108 PF09339 IclR helix-turn-helix domain CTY05_02109 PF07690 Major Facilitator Superfamily CTY05_02110 PF03060 Nitronate monooxygenase CTY05_02111 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02112 PF09339 IclR helix-turn-helix domain CTY05_02113 PF02515 CoA-transferase family III CTY05_02114 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_02114 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_02114 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_02115 PF07690 Major Facilitator Superfamily CTY05_02116 PF13419 Haloacid dehalogenase-like hydrolase CTY05_02117 PF00266 Aminotransferase class-V CTY05_02118 PF01266 FAD dependent oxidoreductase CTY05_02119 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_02120 PF00005 ABC transporter CTY05_02120 PF08402 TOBE domain CTY05_02122 PF00392 Bacterial regulatory proteins, gntR family CTY05_02122 PF07702 UTRA domain CTY05_02123 PF01494 FAD binding domain CTY05_02124 PF01614 Bacterial transcriptional regulator CTY05_02124 PF09339 IclR helix-turn-helix domain CTY05_02125 PF02525 Flavodoxin-like fold CTY05_02126 PF03466 LysR substrate binding domain CTY05_02126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02127 PF02627 Carboxymuconolactone decarboxylase family CTY05_02128 PF00171 Aldehyde dehydrogenase family CTY05_02130 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTY05_02131 PF00171 Aldehyde dehydrogenase family CTY05_02132 PF00296 Luciferase-like monooxygenase CTY05_02133 PF01613 Flavin reductase like domain CTY05_02134 PF12697 Alpha/beta hydrolase family CTY05_02138 PF01292 Prokaryotic cytochrome b561 CTY05_02139 PF00199 Catalase CTY05_02140 PF07690 Major Facilitator Superfamily CTY05_02141 PF00682 HMGL-like CTY05_02142 PF02515 CoA-transferase family III CTY05_02148 PF00313 'Cold-shock' DNA-binding domain CTY05_02154 PF00580 UvrD/REP helicase N-terminal domain CTY05_02154 PF13361 UvrD-like helicase C-terminal domain CTY05_02155 PF02463 RecF/RecN/SMC N terminal domain CTY05_02156 PF03061 Thioesterase superfamily CTY05_02157 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_02158 PF07848 PaaX-like protein CTY05_02158 PF08223 PaaX-like protein C-terminal domain CTY05_02159 PF14535 AMP-binding enzyme C-terminal domain CTY05_02159 PF00501 AMP-binding enzyme CTY05_02160 PF00108 Thiolase, N-terminal domain CTY05_02160 PF02803 Thiolase, C-terminal domain CTY05_02161 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTY05_02161 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CTY05_02161 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTY05_02162 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02163 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02164 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_02164 PF00970 Oxidoreductase FAD-binding domain CTY05_02164 PF00175 Oxidoreductase NAD-binding domain CTY05_02165 PF01883 Iron-sulfur cluster assembly protein CTY05_02166 PF05138 Phenylacetic acid catabolic protein CTY05_02167 PF06243 Phenylacetic acid degradation B CTY05_02168 PF05138 Phenylacetic acid catabolic protein CTY05_02169 PF00171 Aldehyde dehydrogenase family CTY05_02169 PF01575 MaoC like domain CTY05_02170 PF03315 Serine dehydratase beta chain CTY05_02170 PF03313 Serine dehydratase alpha chain CTY05_02171 PF13520 Amino acid permease CTY05_02172 PF00171 Aldehyde dehydrogenase family CTY05_02173 PF00083 Sugar (and other) transporter CTY05_02175 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02175 PF04324 BFD-like [2Fe-2S] binding domain CTY05_02177 PF01266 FAD dependent oxidoreductase CTY05_02178 PF05544 Proline racemase CTY05_02179 PF00392 Bacterial regulatory proteins, gntR family CTY05_02181 PF00701 Dihydrodipicolinate synthetase family CTY05_02184 PF00376 MerR family regulatory protein CTY05_02184 PF09278 MerR, DNA binding CTY05_02186 PF02677 Epoxyqueuosine reductase QueH CTY05_02189 PF07690 Major Facilitator Superfamily CTY05_02190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTY05_02192 PF03466 LysR substrate binding domain CTY05_02192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02198 PF17871 AAA lid domain CTY05_02198 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_02198 PF07724 AAA domain (Cdc48 subfamily) CTY05_02198 PF10431 C-terminal, D2-small domain, of ClpB protein CTY05_02200 PF00691 OmpA family CTY05_02200 PF01389 OmpA-like transmembrane domain CTY05_02213 PF00005 ABC transporter CTY05_02214 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTY05_02215 PF01425 Amidase CTY05_02216 PF01402 Ribbon-helix-helix protein, copG family CTY05_02216 PF08753 NikR C terminal nickel binding domain CTY05_02218 PF01638 HxlR-like helix-turn-helix CTY05_02219 PF02525 Flavodoxin-like fold CTY05_02220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTY05_02220 PF00289 Biotin carboxylase, N-terminal domain CTY05_02220 PF02785 Biotin carboxylase C-terminal domain CTY05_02223 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_02223 PF13823 Alcohol dehydrogenase GroES-associated CTY05_02223 PF00107 Zinc-binding dehydrogenase CTY05_02225 PF00440 Bacterial regulatory proteins, tetR family CTY05_02230 PF00654 Voltage gated chloride channel CTY05_02231 PF02785 Biotin carboxylase C-terminal domain CTY05_02231 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTY05_02231 PF00289 Biotin carboxylase, N-terminal domain CTY05_02231 PF00364 Biotin-requiring enzyme CTY05_02233 PF07286 Protein of unknown function (DUF1445) CTY05_02234 PF03746 LamB/YcsF family CTY05_02235 PF01566 Natural resistance-associated macrophage protein CTY05_02236 PF03466 LysR substrate binding domain CTY05_02236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02240 PF03527 RHS protein CTY05_02240 PF05593 RHS Repeat CTY05_02243 PF05593 RHS Repeat CTY05_02243 PF03527 RHS protein CTY05_02243 PF14220 Domain of unknown function (DUF4329) CTY05_02244 PF04717 Type VI secretion system, phage-baseplate injector CTY05_02244 PF16671 Actin cross-linking domain CTY05_02248 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTY05_02248 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTY05_02252 PF07690 Major Facilitator Superfamily CTY05_02254 PF03279 Bacterial lipid A biosynthesis acyltransferase CTY05_02255 PF00563 EAL domain CTY05_02255 PF00990 Diguanylate cyclase, GGDEF domain CTY05_02255 PF03707 Bacterial signalling protein N terminal repeat CTY05_02257 PF00892 EamA-like transporter family CTY05_02258 PF01037 Lrp/AsnC ligand binding domain CTY05_02259 PF00488 MutS domain V CTY05_02259 PF01624 MutS domain I CTY05_02259 PF05190 MutS family domain IV CTY05_02259 PF05188 MutS domain II CTY05_02259 PF05192 MutS domain III CTY05_02261 PF00037 4Fe-4S binding domain CTY05_02261 PF11953 Domain of unknown function (DUF3470) CTY05_02263 PF01596 O-methyltransferase CTY05_02265 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_02266 PF01205 Uncharacterized protein family UPF0029 CTY05_02268 PF00005 ABC transporter CTY05_02268 PF03412 Peptidase C39 family CTY05_02268 PF00664 ABC transporter transmembrane region CTY05_02269 PF02321 Outer membrane efflux protein CTY05_02270 PF12399 Branched-chain amino acid ATP-binding cassette transporter CTY05_02270 PF00005 ABC transporter CTY05_02271 PF03968 OstA-like protein CTY05_02274 PF00571 CBS domain CTY05_02274 PF01380 SIS domain CTY05_02275 PF09190 DALR domain CTY05_02275 PF01406 tRNA synthetases class I (C) catalytic domain CTY05_02278 PF00589 Phage integrase family CTY05_02286 PF12708 Pectate lyase superfamily protein CTY05_02286 PF13229 Right handed beta helix region CTY05_02290 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) CTY05_02294 PF06381 Protein of unknown function (DUF1073) CTY05_02307 PF01638 HxlR-like helix-turn-helix CTY05_02308 PF07690 Major Facilitator Superfamily CTY05_02313 PF03807 NADP oxidoreductase coenzyme F420-dependent CTY05_02313 PF14748 Pyrroline-5-carboxylate reductase dimerisation CTY05_02315 PF00313 'Cold-shock' DNA-binding domain CTY05_02316 PF01810 LysE type translocator CTY05_02322 PF02601 Exonuclease VII, large subunit CTY05_02322 PF13742 OB-fold nucleic acid binding domain CTY05_02329 PF09278 MerR, DNA binding CTY05_02329 PF00376 MerR family regulatory protein CTY05_02330 PF00403 Heavy-metal-associated domain CTY05_02331 PF00403 Heavy-metal-associated domain CTY05_02332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02332 PF03466 LysR substrate binding domain CTY05_02333 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTY05_02333 PF00355 Rieske [2Fe-2S] domain CTY05_02334 PF00866 Ring hydroxylating beta subunit CTY05_02335 PF00970 Oxidoreductase FAD-binding domain CTY05_02335 PF00175 Oxidoreductase NAD-binding domain CTY05_02335 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_02336 PF00106 short chain dehydrogenase CTY05_02337 PF03594 Benzoate membrane transport protein CTY05_02338 PF07690 Major Facilitator Superfamily CTY05_02340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CTY05_02340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CTY05_02341 PF00271 Helicase conserved C-terminal domain CTY05_02341 PF00270 DEAD/DEAH box helicase CTY05_02341 PF04408 Helicase associated domain (HA2) CTY05_02341 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CTY05_02341 PF11898 Domain of unknown function (DUF3418) CTY05_02342 PF10417 C-terminal domain of 1-Cys peroxiredoxin CTY05_02342 PF00578 AhpC/TSA family CTY05_02346 PF13192 Thioredoxin domain CTY05_02346 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02348 PF00043 Glutathione S-transferase, C-terminal domain CTY05_02348 PF02798 Glutathione S-transferase, N-terminal domain CTY05_02350 PF02390 Putative methyltransferase CTY05_02351 PF00043 Glutathione S-transferase, C-terminal domain CTY05_02351 PF13417 Glutathione S-transferase, N-terminal domain CTY05_02353 PF13488 Glycine zipper CTY05_02353 PF00691 OmpA family CTY05_02354 PF01979 Amidohydrolase family CTY05_02355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTY05_02355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTY05_02357 PF10672 S-adenosylmethionine-dependent methyltransferase CTY05_02357 PF02926 THUMP domain CTY05_02357 PF01170 Putative RNA methylase family UPF0020 CTY05_02360 PF10431 C-terminal, D2-small domain, of ClpB protein CTY05_02360 PF17871 AAA lid domain CTY05_02360 PF07724 AAA domain (Cdc48 subfamily) CTY05_02360 PF02861 Clp amino terminal domain, pathogenicity island component CTY05_02360 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_02363 PF02566 OsmC-like protein CTY05_02364 PF13545 Crp-like helix-turn-helix domain CTY05_02364 PF00027 Cyclic nucleotide-binding domain CTY05_02365 PF00248 Aldo/keto reductase family CTY05_02368 PF00709 Adenylosuccinate synthetase CTY05_02369 PF13393 Histidyl-tRNA synthetase CTY05_02370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTY05_02370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTY05_02371 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTY05_02371 PF02272 DHHA1 domain CTY05_02371 PF01411 tRNA synthetases class II (A) CTY05_02372 PF01842 ACT domain CTY05_02372 PF00696 Amino acid kinase family CTY05_02372 PF13840 ACT domain CTY05_02373 PF02599 Global regulator protein family CTY05_02374 PF01351 Ribonuclease HII CTY05_02376 PF01292 Prokaryotic cytochrome b561 CTY05_02377 PF00962 Adenosine/AMP deaminase CTY05_02378 PF00860 Permease family CTY05_02380 PF00743 Flavin-binding monooxygenase-like CTY05_02381 PF00106 short chain dehydrogenase CTY05_02383 PF02678 Pirin CTY05_02383 PF17954 Quercetinase C-terminal cupin domain CTY05_02384 PF17932 Tetracyclin repressor-like, C-terminal domain CTY05_02384 PF00440 Bacterial regulatory proteins, tetR family CTY05_02386 PF00106 short chain dehydrogenase CTY05_02387 PF00743 Flavin-binding monooxygenase-like CTY05_02388 PF04072 Leucine carboxyl methyltransferase CTY05_02389 PF12833 Helix-turn-helix domain CTY05_02389 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTY05_02390 PF00743 Flavin-binding monooxygenase-like CTY05_02391 PF00106 short chain dehydrogenase CTY05_02392 PF07859 alpha/beta hydrolase fold CTY05_02393 PF05199 GMC oxidoreductase CTY05_02394 PF03573 outer membrane porin, OprD family CTY05_02395 PF07690 Major Facilitator Superfamily CTY05_02396 PF00355 Rieske [2Fe-2S] domain CTY05_02397 PF00175 Oxidoreductase NAD-binding domain CTY05_02397 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_02400 PF07690 Major Facilitator Superfamily CTY05_02401 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02402 PF00171 Aldehyde dehydrogenase family CTY05_02404 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_02404 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_02404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_02405 PF03573 outer membrane porin, OprD family CTY05_02408 PF07519 Tannase and feruloyl esterase CTY05_02409 PF00392 Bacterial regulatory proteins, gntR family CTY05_02409 PF07729 FCD domain CTY05_02410 PF00171 Aldehyde dehydrogenase family CTY05_02411 PF00701 Dihydrodipicolinate synthetase family CTY05_02412 PF13378 Enolase C-terminal domain-like CTY05_02413 PF07690 Major Facilitator Superfamily CTY05_02414 PF08666 SAF domain CTY05_02414 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CTY05_02415 PF00892 EamA-like transporter family CTY05_02416 PF12833 Helix-turn-helix domain CTY05_02416 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTY05_02417 PF00171 Aldehyde dehydrogenase family CTY05_02421 PF00324 Amino acid permease CTY05_02422 PF04958 Arginine N-succinyltransferase beta subunit CTY05_02423 PF00202 Aminotransferase class-III CTY05_02425 PF00171 Aldehyde dehydrogenase family CTY05_02427 PF07729 FCD domain CTY05_02427 PF00392 Bacterial regulatory proteins, gntR family CTY05_02429 PF00324 Amino acid permease CTY05_02430 PF01266 FAD dependent oxidoreductase CTY05_02431 PF00324 Amino acid permease CTY05_02439 PF03527 RHS protein CTY05_02439 PF05593 RHS Repeat CTY05_02440 PF16671 Actin cross-linking domain CTY05_02440 PF04717 Type VI secretion system, phage-baseplate injector CTY05_02443 PF03180 NLPA lipoprotein CTY05_02445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_02445 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02446 PF00764 Arginosuccinate synthase CTY05_02447 PF00360 Phytochrome region CTY05_02447 PF01590 GAF domain CTY05_02447 PF00563 EAL domain CTY05_02447 PF00990 Diguanylate cyclase, GGDEF domain CTY05_02448 PF01979 Amidohydrolase family CTY05_02449 PF00929 Exonuclease CTY05_02451 PF07715 TonB-dependent Receptor Plug Domain CTY05_02451 PF00593 TonB dependent receptor CTY05_02458 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTY05_02458 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02459 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTY05_02459 PF00005 ABC transporter CTY05_02460 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_02460 PF12911 N-terminal TM domain of oligopeptide transport permease C CTY05_02461 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_02462 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTY05_02463 PF01464 Transglycosylase SLT domain CTY05_02463 PF01476 LysM domain CTY05_02463 PF01464 Transglycosylase SLT domain CTY05_02463 PF01476 LysM domain CTY05_02464 PF00929 Exonuclease CTY05_02466 PF00293 NUDIX domain CTY05_02466 PF09297 NADH pyrophosphatase zinc ribbon domain CTY05_02468 PF04972 BON domain CTY05_02469 PF02021 Uncharacterised protein family UPF0102 CTY05_02470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTY05_02472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02472 PF03466 LysR substrate binding domain CTY05_02473 PF01810 LysE type translocator CTY05_02475 PF13411 MerR HTH family regulatory protein CTY05_02477 PF01494 FAD binding domain CTY05_02478 PF01494 FAD binding domain CTY05_02479 PF05195 Aminopeptidase P, N-terminal domain CTY05_02479 PF00557 Metallopeptidase family M24 CTY05_02485 PF00313 'Cold-shock' DNA-binding domain CTY05_02500 PF01476 LysM domain CTY05_02500 PF08525 Opacity-associated protein A N-terminal motif CTY05_02500 PF01551 Peptidase family M23 CTY05_02536 PF01555 DNA methylase CTY05_02541 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_02556 PF01812 5-formyltetrahydrofolate cyclo-ligase family CTY05_02557 PF00004 ATPase family associated with various cellular activities (AAA) CTY05_02557 PF02190 ATP-dependent protease La (LON) substrate-binding domain CTY05_02557 PF05362 Lon protease (S16) C-terminal proteolytic domain CTY05_02558 PF02590 Predicted SPOUT methyltransferase CTY05_02561 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CTY05_02561 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CTY05_02562 PF04060 Putative Fe-S cluster CTY05_02563 PF10576 Iron-sulfur binding domain of endonuclease III CTY05_02563 PF00730 HhH-GPD superfamily base excision DNA repair protein CTY05_02563 PF00633 Helix-hairpin-helix motif CTY05_02564 PF05191 Adenylate kinase, active site lid CTY05_02567 PF03717 Penicillin-binding Protein dimerisation domain CTY05_02567 PF00905 Penicillin binding protein transpeptidase domain CTY05_02570 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTY05_02571 PF01730 UreF CTY05_02572 PF05194 UreE urease accessory protein, C-terminal domain CTY05_02572 PF02814 UreE urease accessory protein, N-terminal domain CTY05_02573 PF01979 Amidohydrolase family CTY05_02573 PF00449 Urease alpha-subunit, N-terminal domain CTY05_02574 PF00699 Urease beta subunit CTY05_02575 PF00547 Urease, gamma subunit CTY05_02576 PF01774 UreD urease accessory protein CTY05_02579 PF00463 Isocitrate lyase family CTY05_02580 PF03466 LysR substrate binding domain CTY05_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02581 PF01595 Cyclin M transmembrane N-terminal domain CTY05_02581 PF03471 Transporter associated domain CTY05_02581 PF00571 CBS domain CTY05_02582 PF03600 Citrate transporter CTY05_02585 PF00009 Elongation factor Tu GTP binding domain CTY05_02586 PF01507 Phosphoadenosine phosphosulfate reductase family CTY05_02588 PF14052 Capsule assembly protein Wzi CTY05_02589 PF00152 tRNA synthetases class II (D, K and N) CTY05_02589 PF01336 OB-fold nucleic acid binding domain CTY05_02592 PF00301 Rubredoxin CTY05_02593 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02593 PF18113 Rubredoxin binding C-terminal domain CTY05_02594 PF00561 alpha/beta hydrolase fold CTY05_02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02595 PF03466 LysR substrate binding domain CTY05_02597 PF17941 Polyphosphate kinase C-terminal domain 1 CTY05_02597 PF13090 Polyphosphate kinase C-terminal domain 2 CTY05_02597 PF02503 Polyphosphate kinase middle domain CTY05_02597 PF13089 Polyphosphate kinase N-terminal domain CTY05_02598 PF00912 Transglycosylase CTY05_02599 PF01694 Rhomboid family CTY05_02601 PF00005 ABC transporter CTY05_02602 PF13472 GDSL-like Lipase/Acylhydrolase family CTY05_02603 PF00484 Carbonic anhydrase CTY05_02604 PF00561 alpha/beta hydrolase fold CTY05_02606 PF00593 TonB dependent receptor CTY05_02606 PF07715 TonB-dependent Receptor Plug Domain CTY05_02607 PF01106 NifU-like domain CTY05_02607 PF01521 Iron-sulphur cluster biosynthesis CTY05_02609 PF00884 Sulfatase CTY05_02610 PF03781 Sulfatase-modifying factor enzyme 1 CTY05_02613 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_02614 PF01384 Phosphate transporter family CTY05_02615 PF02574 Homocysteine S-methyltransferase CTY05_02615 PF02310 B12 binding domain CTY05_02615 PF02607 B12 binding domain CTY05_02615 PF02965 Vitamin B12 dependent methionine synthase, activation domain CTY05_02615 PF00809 Pterin binding enzyme CTY05_02616 PF02779 Transketolase, pyrimidine binding domain CTY05_02616 PF02780 Transketolase, C-terminal domain CTY05_02617 PF00456 Transketolase, thiamine diphosphate binding domain CTY05_02618 PF07690 Major Facilitator Superfamily CTY05_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02620 PF03466 LysR substrate binding domain CTY05_02622 PF01263 Aldose 1-epimerase CTY05_02623 PF07690 Major Facilitator Superfamily CTY05_02624 PF02311 AraC-like ligand binding domain CTY05_02624 PF12833 Helix-turn-helix domain CTY05_02625 PF04960 Glutaminase CTY05_02626 PF01327 Polypeptide deformylase CTY05_02628 PF07690 Major Facilitator Superfamily CTY05_02630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTY05_02630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTY05_02630 PF00205 Thiamine pyrophosphate enzyme, central domain CTY05_02631 PF00171 Aldehyde dehydrogenase family CTY05_02632 PF01958 Domain of unknown function DUF108 CTY05_02632 PF03447 Homoserine dehydrogenase, NAD binding domain CTY05_02634 PF12697 Alpha/beta hydrolase family CTY05_02636 PF07690 Major Facilitator Superfamily CTY05_02637 PF14759 Reductase C-terminal CTY05_02637 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02638 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTY05_02640 PF00355 Rieske [2Fe-2S] domain CTY05_02642 PF00355 Rieske [2Fe-2S] domain CTY05_02643 PF01614 Bacterial transcriptional regulator CTY05_02643 PF09339 IclR helix-turn-helix domain CTY05_02646 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02648 PF00535 Glycosyl transferase family 2 CTY05_02649 PF01522 Polysaccharide deacetylase CTY05_02649 PF14883 Hypothetical glycosyl hydrolase family 13 CTY05_02650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTY05_02651 PF07152 YaeQ protein CTY05_02652 PF00375 Sodium:dicarboxylate symporter family CTY05_02653 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTY05_02653 PF07683 Cobalamin synthesis protein cobW C-terminal domain CTY05_02655 PF03061 Thioesterase superfamily CTY05_02657 PF02028 BCCT, betaine/carnitine/choline family transporter CTY05_02658 PF02028 BCCT, betaine/carnitine/choline family transporter CTY05_02659 PF00440 Bacterial regulatory proteins, tetR family CTY05_02659 PF13977 BetI-type transcriptional repressor, C-terminal CTY05_02660 PF00171 Aldehyde dehydrogenase family CTY05_02661 PF05199 GMC oxidoreductase CTY05_02661 PF00732 GMC oxidoreductase CTY05_02662 PF06039 Malate:quinone oxidoreductase (Mqo) CTY05_02664 PF02574 Homocysteine S-methyltransferase CTY05_02665 PF13520 Amino acid permease CTY05_02670 PF00701 Dihydrodipicolinate synthetase family CTY05_02671 PF00083 Sugar (and other) transporter CTY05_02676 PF01026 TatD related DNase CTY05_02679 PF07693 KAP family P-loop domain CTY05_02683 PF07690 Major Facilitator Superfamily CTY05_02684 PF13533 Biotin-lipoyl like CTY05_02685 PF03061 Thioesterase superfamily CTY05_02686 PF00490 Delta-aminolevulinic acid dehydratase CTY05_02687 PF01266 FAD dependent oxidoreductase CTY05_02688 PF08338 Domain of unknown function (DUF1731) CTY05_02688 PF01370 NAD dependent epimerase/dehydratase family CTY05_02692 PF00149 Calcineurin-like phosphoesterase CTY05_02692 PF12320 Type 5 capsule protein repressor C-terminal domain CTY05_02694 PF01168 Alanine racemase, N-terminal domain CTY05_02695 PF00437 Type II/IV secretion system protein CTY05_02696 PF00437 Type II/IV secretion system protein CTY05_02697 PF01475 Ferric uptake regulator family CTY05_02698 PF04355 SmpA / OmlA family CTY05_02699 PF03658 RnfH family Ubiquitin CTY05_02701 PF01814 Hemerythrin HHE cation binding domain CTY05_02702 PF13230 Glutamine amidotransferases class-II CTY05_02704 PF00696 Amino acid kinase family CTY05_02705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTY05_02705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTY05_02705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTY05_02705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTY05_02706 PF00692 dUTPase CTY05_02707 PF13361 UvrD-like helicase C-terminal domain CTY05_02707 PF00580 UvrD/REP helicase N-terminal domain CTY05_02708 PF00691 OmpA family CTY05_02708 PF13488 Glycine zipper CTY05_02709 PF01553 Acyltransferase CTY05_02711 PF03775 Septum formation inhibitor MinC, C-terminal domain CTY05_02712 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CTY05_02713 PF03776 Septum formation topological specificity factor MinE CTY05_02715 PF01810 LysE type translocator CTY05_02716 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CTY05_02716 PF17854 FtsK alpha domain CTY05_02716 PF09397 Ftsk gamma domain CTY05_02716 PF01580 FtsK/SpoIIIE family CTY05_02717 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTY05_02718 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CTY05_02719 PF04377 Arginine-tRNA-protein transferase, C terminus CTY05_02719 PF04376 Arginine-tRNA-protein transferase, N terminus CTY05_02720 PF00583 Acetyltransferase (GNAT) family CTY05_02723 PF00009 Elongation factor Tu GTP binding domain CTY05_02723 PF03144 Elongation factor Tu domain 2 CTY05_02723 PF03143 Elongation factor Tu C-terminal domain CTY05_02724 PF14492 Elongation Factor G, domain II CTY05_02724 PF00679 Elongation factor G C-terminus CTY05_02724 PF00009 Elongation factor Tu GTP binding domain CTY05_02724 PF03144 Elongation factor Tu domain 2 CTY05_02724 PF03764 Elongation factor G, domain IV CTY05_02725 PF00177 Ribosomal protein S7p/S5e CTY05_02726 PF00164 Ribosomal protein S12/S23 CTY05_02728 PF02801 Beta-ketoacyl synthase, C-terminal domain CTY05_02728 PF00109 Beta-ketoacyl synthase, N-terminal domain CTY05_02730 PF02678 Pirin CTY05_02730 PF05726 Pirin C-terminal cupin domain CTY05_02732 PF02540 NAD synthase CTY05_02732 PF00795 Carbon-nitrogen hydrolase CTY05_02735 PF00175 Oxidoreductase NAD-binding domain CTY05_02735 PF00111 2Fe-2S iron-sulfur cluster binding domain CTY05_02735 PF00970 Oxidoreductase FAD-binding domain CTY05_02736 PF00171 Aldehyde dehydrogenase family CTY05_02737 PF00355 Rieske [2Fe-2S] domain CTY05_02737 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTY05_02738 PF07859 alpha/beta hydrolase fold CTY05_02739 PF02028 BCCT, betaine/carnitine/choline family transporter CTY05_02740 PF00180 Isocitrate/isopropylmalate dehydrogenase CTY05_02741 PF03466 LysR substrate binding domain CTY05_02741 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02744 PF00037 4Fe-4S binding domain CTY05_02745 PF01467 Cytidylyltransferase-like CTY05_02746 PF01668 SmpB protein CTY05_02747 PF03358 NADPH-dependent FMN reductase CTY05_02749 PF01479 S4 domain CTY05_02749 PF00849 RNA pseudouridylate synthase CTY05_02750 PF13525 Outer membrane lipoprotein CTY05_02751 PF01807 CHC2 zinc finger CTY05_02751 PF08275 DNA primase catalytic core, N-terminal domain CTY05_02751 PF08278 DNA primase DnaG DnaB-binding CTY05_02751 PF10410 DnaB-helicase binding domain of primase CTY05_02752 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CTY05_02752 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CTY05_02752 PF01488 Shikimate / quinate 5-dehydrogenase CTY05_02754 PF03550 Outer membrane lipoprotein LolB CTY05_02759 PF14572 Phosphoribosyl synthetase-associated domain CTY05_02759 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CTY05_02760 PF01386 Ribosomal L25p family CTY05_02761 PF01195 Peptidyl-tRNA hydrolase CTY05_02762 PF02261 Aspartate decarboxylase CTY05_02765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CTY05_02767 PF02581 Thiamine monophosphate synthase CTY05_02767 PF03070 TENA/THI-4/PQQC family CTY05_02767 PF08543 Phosphomethylpyrimidine kinase CTY05_02768 PF04972 BON domain CTY05_02768 PF01476 LysM domain CTY05_02769 PF00550 Phosphopantetheine attachment site CTY05_02771 PF00698 Acyl transferase domain CTY05_02772 PF01783 Ribosomal L32p protein family CTY05_02773 PF02620 Large ribosomal RNA subunit accumulation protein YceD CTY05_02774 PF04315 Elongation factor P hydroxylase CTY05_02775 PF01300 Telomere recombination CTY05_02776 PF02616 Segregation and condensation protein ScpA CTY05_02777 PF04079 Segregation and condensation complex subunit ScpB CTY05_02778 PF01479 S4 domain CTY05_02778 PF00849 RNA pseudouridylate synthase CTY05_02781 PF00155 Aminotransferase class I and II CTY05_02782 PF04055 Radical SAM superfamily CTY05_02782 PF06968 Biotin and Thiamin Synthesis associated domain CTY05_02782 PF00202 Aminotransferase class-III CTY05_02783 PF08241 Methyltransferase domain CTY05_02783 PF12697 Alpha/beta hydrolase family CTY05_02784 PF02358 Trehalose-phosphatase CTY05_02785 PF00982 Glycosyltransferase family 20 CTY05_02786 PF07690 Major Facilitator Superfamily CTY05_02787 PF00210 Ferritin-like domain CTY05_02788 PF01653 NAD-dependent DNA ligase adenylation domain CTY05_02788 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CTY05_02788 PF12826 Helix-hairpin-helix motif CTY05_02788 PF00533 BRCA1 C Terminus (BRCT) domain CTY05_02788 PF03120 NAD-dependent DNA ligase OB-fold domain CTY05_02790 PF06470 SMC proteins Flexible Hinge Domain CTY05_02790 PF02463 RecF/RecN/SMC N terminal domain CTY05_02792 PF01925 Sulfite exporter TauE/SafE CTY05_02794 PF03309 Type III pantothenate kinase CTY05_02795 PF02881 SRP54-type protein, helical bundle domain CTY05_02795 PF00448 SRP54-type protein, GTPase domain CTY05_02795 PF02978 Signal peptide binding domain CTY05_02797 PF01207 Dihydrouridine synthase (Dus) CTY05_02803 PF00692 dUTPase CTY05_02806 PF01048 Phosphorylase superfamily CTY05_02807 PF10609 NUBPL iron-transfer P-loop NTPase CTY05_02809 PF09334 tRNA synthetases class I (M) CTY05_02809 PF01588 Putative tRNA binding domain CTY05_02814 PF13533 Biotin-lipoyl like CTY05_02815 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_02818 PF05552 Conserved TM helix CTY05_02821 PF00175 Oxidoreductase NAD-binding domain CTY05_02821 PF00970 Oxidoreductase FAD-binding domain CTY05_02822 PF03466 LysR substrate binding domain CTY05_02822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02824 PF00313 'Cold-shock' DNA-binding domain CTY05_02826 PF00361 Proton-conducting membrane transporter CTY05_02827 PF00361 Proton-conducting membrane transporter CTY05_02828 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CTY05_02828 PF00361 Proton-conducting membrane transporter CTY05_02829 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CTY05_02830 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CTY05_02831 PF12838 4Fe-4S dicluster domain CTY05_02832 PF00146 NADH dehydrogenase CTY05_02833 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CTY05_02833 PF00384 Molybdopterin oxidoreductase CTY05_02833 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTY05_02834 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CTY05_02834 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CTY05_02834 PF10531 SLBB domain CTY05_02836 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CTY05_02836 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CTY05_02837 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CTY05_02838 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CTY05_02839 PF00990 Diguanylate cyclase, GGDEF domain CTY05_02839 PF17151 Periplasmic sensor domain CTY05_02841 PF00512 His Kinase A (phospho-acceptor) domain CTY05_02841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_02841 PF00672 HAMP domain CTY05_02842 PF00486 Transcriptional regulatory protein, C terminal CTY05_02842 PF00072 Response regulator receiver domain CTY05_02843 PF02867 Ribonucleotide reductase, barrel domain CTY05_02843 PF00317 Ribonucleotide reductase, all-alpha domain CTY05_02843 PF03477 ATP cone domain CTY05_02845 PF00268 Ribonucleotide reductase, small chain CTY05_02847 PF02567 Phenazine biosynthesis-like protein CTY05_02853 PF16295 Tetracyclin repressor-like, C-terminal domain CTY05_02853 PF00440 Bacterial regulatory proteins, tetR family CTY05_02854 PF01613 Flavin reductase like domain CTY05_02855 PF01717 Cobalamin-independent synthase, Catalytic domain CTY05_02855 PF08267 Cobalamin-independent synthase, N-terminal domain CTY05_02857 PF03466 LysR substrate binding domain CTY05_02857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02858 PF01810 LysE type translocator CTY05_02860 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTY05_02860 PF12833 Helix-turn-helix domain CTY05_02861 PF01546 Peptidase family M20/M25/M40 CTY05_02861 PF07687 Peptidase dimerisation domain CTY05_02863 PF03466 LysR substrate binding domain CTY05_02863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02864 PF07690 Major Facilitator Superfamily CTY05_02866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02866 PF03466 LysR substrate binding domain CTY05_02867 PF00890 FAD binding domain CTY05_02867 PF14537 Cytochrome c3 CTY05_02869 PF02515 CoA-transferase family III CTY05_02870 PF07690 Major Facilitator Superfamily CTY05_02871 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_02871 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_02871 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_02872 PF03466 LysR substrate binding domain CTY05_02872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02873 PF00107 Zinc-binding dehydrogenase CTY05_02873 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_02874 PF00962 Adenosine/AMP deaminase CTY05_02879 PF02445 Quinolinate synthetase A protein CTY05_02880 PF01960 ArgJ family CTY05_02881 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTY05_02881 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CTY05_02882 PF00893 Small Multidrug Resistance protein CTY05_02884 PF05275 Copper resistance protein B precursor (CopB) CTY05_02885 PF00394 Multicopper oxidase CTY05_02885 PF07731 Multicopper oxidase CTY05_02885 PF07732 Multicopper oxidase CTY05_02888 PF00834 Ribulose-phosphate 3 epimerase family CTY05_02890 PF00756 Putative esterase CTY05_02892 PF04445 Putative SAM-dependent methyltransferase CTY05_02893 PF00814 Glycoprotease family CTY05_02894 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_02895 PF00293 NUDIX domain CTY05_02903 PF04715 Anthranilate synthase component I, N terminal region CTY05_02903 PF00425 chorismate binding enzyme CTY05_02904 PF00155 Aminotransferase class I and II CTY05_02905 PF00815 Histidinol dehydrogenase CTY05_02906 PF01634 ATP phosphoribosyltransferase CTY05_02907 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CTY05_02908 PF01722 BolA-like protein CTY05_02909 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CTY05_02910 PF04552 Sigma-54, DNA binding domain CTY05_02910 PF00309 Sigma-54 factor, Activator interacting domain (AID) CTY05_02910 PF04963 Sigma-54 factor, core binding domain CTY05_02916 PF00795 Carbon-nitrogen hydrolase CTY05_02918 PF01047 MarR family CTY05_02919 PF02566 OsmC-like protein CTY05_02920 PF00437 Type II/IV secretion system protein CTY05_02924 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CTY05_02924 PF01367 5'-3' exonuclease, C-terminal SAM fold CTY05_02924 PF00476 DNA polymerase family A CTY05_02924 PF01612 3'-5' exonuclease CTY05_02925 PF02325 YGGT family CTY05_02926 PF14748 Pyrroline-5-carboxylate reductase dimerisation CTY05_02926 PF03807 NADP oxidoreductase coenzyme F420-dependent CTY05_02927 PF09179 TilS substrate binding domain CTY05_02927 PF11734 TilS substrate C-terminal domain CTY05_02927 PF01171 PP-loop family CTY05_02928 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CTY05_02929 PF02541 Ppx/GppA phosphatase family CTY05_02930 PF00085 Thioredoxin CTY05_02931 PF07497 Rho termination factor, RNA-binding domain CTY05_02931 PF07498 Rho termination factor, N-terminal domain CTY05_02931 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTY05_02933 PF00216 Bacterial DNA-binding protein CTY05_02934 PF03147 Ferredoxin-fold anticodon binding domain CTY05_02934 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CTY05_02934 PF01588 Putative tRNA binding domain CTY05_02934 PF03483 B3/4 domain CTY05_02934 PF03484 tRNA synthetase B5 domain CTY05_02935 PF01409 tRNA synthetases class II core domain (F) CTY05_02935 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CTY05_02938 PF00453 Ribosomal protein L20 CTY05_02939 PF01632 Ribosomal protein L35 CTY05_02940 PF07690 Major Facilitator Superfamily CTY05_02941 PF09335 SNARE associated Golgi protein CTY05_02942 PF00043 Glutathione S-transferase, C-terminal domain CTY05_02942 PF02798 Glutathione S-transferase, N-terminal domain CTY05_02943 PF00707 Translation initiation factor IF-3, C-terminal domain CTY05_02943 PF05198 Translation initiation factor IF-3, N-terminal domain CTY05_02944 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTY05_02944 PF03129 Anticodon binding domain CTY05_02944 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTY05_02944 PF02824 TGS domain CTY05_02945 PF00501 AMP-binding enzyme CTY05_02945 PF13193 AMP-binding enzyme C-terminal domain CTY05_02946 PF04751 Protein of unknown function (DUF615) CTY05_02947 PF00381 PTS HPr component phosphorylation site CTY05_02948 PF03668 P-loop ATPase protein family CTY05_02949 PF02569 Pantoate-beta-alanine ligase CTY05_02950 PF02548 Ketopantoate hydroxymethyltransferase CTY05_02951 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CTY05_02952 PF12627 Probable RNA and SrmB- binding site of polymerase A CTY05_02952 PF01743 Poly A polymerase head domain CTY05_02952 PF12626 Polymerase A arginine-rich C-terminus CTY05_02954 PF03819 MazG nucleotide pyrophosphohydrolase domain CTY05_02956 PF13291 ACT domain CTY05_02956 PF02824 TGS domain CTY05_02956 PF04607 Region found in RelA / SpoT proteins CTY05_02957 PF05958 tRNA (Uracil-5-)-methyltransferase CTY05_02959 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_02960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTY05_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_02960 PF00672 HAMP domain CTY05_02960 PF00512 His Kinase A (phospho-acceptor) domain CTY05_02960 PF01627 Hpt domain CTY05_02960 PF00072 Response regulator receiver domain CTY05_02961 PF00378 Enoyl-CoA hydratase/isomerase CTY05_02962 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTY05_02962 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTY05_02963 PF01261 Xylose isomerase-like TIM barrel CTY05_02965 PF00106 short chain dehydrogenase CTY05_02966 PF02233 NAD(P) transhydrogenase beta subunit CTY05_02967 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CTY05_02968 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CTY05_02968 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CTY05_02969 PF00892 EamA-like transporter family CTY05_02971 PF07690 Major Facilitator Superfamily CTY05_02972 PF01207 Dihydrouridine synthase (Dus) CTY05_02974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_02974 PF03466 LysR substrate binding domain CTY05_02975 PF00899 ThiF family CTY05_02976 PF00330 Aconitase family (aconitate hydratase) CTY05_02976 PF00694 Aconitase C-terminal domain CTY05_02977 PF01026 TatD related DNase CTY05_02980 PF00009 Elongation factor Tu GTP binding domain CTY05_02980 PF03144 Elongation factor Tu domain 2 CTY05_02980 PF16658 Class II release factor RF3, C-terminal domain CTY05_02984 PF03707 Bacterial signalling protein N terminal repeat CTY05_02984 PF00990 Diguanylate cyclase, GGDEF domain CTY05_02984 PF00563 EAL domain CTY05_02985 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CTY05_02985 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CTY05_02986 PF10369 Small subunit of acetolactate synthase CTY05_02987 PF00205 Thiamine pyrophosphate enzyme, central domain CTY05_02987 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTY05_02987 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTY05_02989 PF00133 tRNA synthetases class I (I, L, M and V) CTY05_02989 PF08264 Anticodon-binding domain of tRNA CTY05_02989 PF13603 Leucyl-tRNA synthetase, Domain 2 CTY05_02989 PF09334 tRNA synthetases class I (M) CTY05_02992 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTY05_02993 PF00005 ABC transporter CTY05_02993 PF02687 FtsX-like permease family CTY05_02993 PF12704 MacB-like periplasmic core domain CTY05_02994 PF02321 Outer membrane efflux protein CTY05_02997 PF00929 Exonuclease CTY05_02998 PF03193 RsgA GTPase CTY05_03000 PF00462 Glutaredoxin CTY05_03001 PF02556 Preprotein translocase subunit SecB CTY05_03003 PF01926 50S ribosome-binding GTPase CTY05_03003 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CTY05_03004 PF13360 PQQ-like domain CTY05_03006 PF03129 Anticodon binding domain CTY05_03006 PF13393 Histidyl-tRNA synthetase CTY05_03007 PF04551 GcpE protein CTY05_03008 PF13464 Domain of unknown function (DUF4115) CTY05_03010 PF04055 Radical SAM superfamily CTY05_03011 PF00334 Nucleoside diphosphate kinase CTY05_03012 PF04384 Iron-sulphur cluster assembly CTY05_03013 PF01569 PAP2 superfamily CTY05_03014 PF13439 Glycosyltransferase Family 4 CTY05_03014 PF00534 Glycosyl transferases group 1 CTY05_03015 PF03572 Peptidase family S41 CTY05_03015 PF00595 PDZ domain CTY05_03015 PF11818 C-terminal domain of tail specific protease (DUF3340) CTY05_03015 PF17804 Tail specific protease N-terminal domain CTY05_03016 PF00933 Glycosyl hydrolase family 3 N terminal domain CTY05_03018 PF00561 alpha/beta hydrolase fold CTY05_03019 PF00171 Aldehyde dehydrogenase family CTY05_03020 PF00171 Aldehyde dehydrogenase family CTY05_03021 PF01202 Shikimate kinase CTY05_03022 PF02447 GntP family permease CTY05_03023 PF01081 KDPG and KHG aldolase CTY05_03024 PF00920 Dehydratase family CTY05_03025 PF00871 Acetokinase family CTY05_03026 PF01515 Phosphate acetyl/butaryl transferase CTY05_03026 PF07085 DRTGG domain CTY05_03027 PF05681 Fumarate hydratase (Fumerase) CTY05_03027 PF05683 Fumarase C-terminus CTY05_03030 PF06689 ClpX C4-type zinc finger CTY05_03030 PF07724 AAA domain (Cdc48 subfamily) CTY05_03030 PF10431 C-terminal, D2-small domain, of ClpB protein CTY05_03031 PF00574 Clp protease CTY05_03032 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTY05_03032 PF05698 Bacterial trigger factor protein (TF) C-terminus CTY05_03032 PF05697 Bacterial trigger factor protein (TF) CTY05_03033 PF07715 TonB-dependent Receptor Plug Domain CTY05_03033 PF00593 TonB dependent receptor CTY05_03034 PF13640 2OG-Fe(II) oxygenase superfamily CTY05_03034 PF18331 PKHD-type hydroxylase C-terminal domain CTY05_03035 PF00682 HMGL-like CTY05_03035 PF08502 LeuA allosteric (dimerisation) domain CTY05_03036 PF00561 alpha/beta hydrolase fold CTY05_03037 PF07021 Methionine biosynthesis protein MetW CTY05_03037 PF00561 alpha/beta hydrolase fold CTY05_03039 PF01725 Ham1 family CTY05_03041 PF02416 mttA/Hcf106 family CTY05_03042 PF02416 mttA/Hcf106 family CTY05_03043 PF00902 Sec-independent protein translocase protein (TatC) CTY05_03047 PF01790 Prolipoprotein diacylglyceryl transferase CTY05_03050 PF00303 Thymidylate synthase CTY05_03051 PF00186 Dihydrofolate reductase CTY05_03053 PF01625 Peptide methionine sulfoxide reductase CTY05_03055 PF01618 MotA/TolQ/ExbB proton channel family CTY05_03057 PF01842 ACT domain CTY05_03057 PF00551 Formyl transferase CTY05_03059 PF00171 Aldehyde dehydrogenase family CTY05_03060 PF00830 Ribosomal L28 family CTY05_03061 PF00471 Ribosomal protein L33 CTY05_03062 PF02254 TrkA-N domain CTY05_03062 PF00999 Sodium/hydrogen exchanger family CTY05_03066 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CTY05_03067 PF00580 UvrD/REP helicase N-terminal domain CTY05_03067 PF13361 UvrD-like helicase C-terminal domain CTY05_03070 PF01131 DNA topoisomerase CTY05_03070 PF01396 Topoisomerase DNA binding C4 zinc finger CTY05_03070 PF01751 Toprim domain CTY05_03070 PF08272 Topoisomerase I zinc-ribbon-like CTY05_03072 PF01638 HxlR-like helix-turn-helix CTY05_03073 PF00107 Zinc-binding dehydrogenase CTY05_03073 PF08240 Alcohol dehydrogenase GroES-like domain CTY05_03076 PF01810 LysE type translocator CTY05_03077 PF03279 Bacterial lipid A biosynthesis acyltransferase CTY05_03079 PF00375 Sodium:dicarboxylate symporter family CTY05_03081 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTY05_03081 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTY05_03085 PF01416 tRNA pseudouridine synthase CTY05_03087 PF01176 Translation initiation factor 1A / IF-1 CTY05_03090 PF00180 Isocitrate/isopropylmalate dehydrogenase CTY05_03092 PF00694 Aconitase C-terminal domain CTY05_03093 PF00330 Aconitase family (aconitate hydratase) CTY05_03095 PF03466 LysR substrate binding domain CTY05_03095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_03097 PF00293 NUDIX domain CTY05_03098 PF05524 PEP-utilising enzyme, N-terminal CTY05_03098 PF00391 PEP-utilising enzyme, mobile domain CTY05_03098 PF01590 GAF domain CTY05_03098 PF02896 PEP-utilising enzyme, TIM barrel domain CTY05_03099 PF00141 Peroxidase CTY05_03100 PF12706 Beta-lactamase superfamily domain CTY05_03101 PF03466 LysR substrate binding domain CTY05_03101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_03103 PF02798 Glutathione S-transferase, N-terminal domain CTY05_03104 PF08279 HTH domain CTY05_03104 PF13280 WYL domain CTY05_03105 PF13419 Haloacid dehalogenase-like hydrolase CTY05_03106 PF00849 RNA pseudouridylate synthase CTY05_03106 PF01479 S4 domain CTY05_03107 PF12111 Polyribonucleotide phosphorylase C terminal CTY05_03107 PF10150 Ribonuclease E/G family CTY05_03107 PF00575 S1 RNA binding domain CTY05_03108 PF00501 AMP-binding enzyme CTY05_03108 PF13193 AMP-binding enzyme C-terminal domain CTY05_03111 PF03466 LysR substrate binding domain CTY05_03111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_03112 PF00106 short chain dehydrogenase CTY05_03113 PF06969 HemN C-terminal domain CTY05_03113 PF04055 Radical SAM superfamily CTY05_03115 PF01554 MatE CTY05_03116 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTY05_03116 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_03116 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_03117 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTY05_03117 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_03118 PF03109 ABC1 family CTY05_03119 PF01197 Ribosomal protein L31 CTY05_03121 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CTY05_03125 PF03884 DNA gyrase inhibitor YacG CTY05_03126 PF00753 Metallo-beta-lactamase superfamily CTY05_03127 PF00762 Ferrochelatase CTY05_03129 PF01177 Asp/Glu/Hydantoin racemase CTY05_03133 PF01206 Sulfurtransferase TusA CTY05_03134 PF00571 CBS domain CTY05_03134 PF03471 Transporter associated domain CTY05_03135 PF00795 Carbon-nitrogen hydrolase CTY05_03136 PF01588 Putative tRNA binding domain CTY05_03138 PF07963 Prokaryotic N-terminal methylation motif CTY05_03138 PF08334 Type II secretion system (T2SS), protein G CTY05_03139 PF00482 Type II secretion system (T2SS), protein F CTY05_03140 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CTY05_03140 PF18074 Primosomal protein N C-terminal domain CTY05_03140 PF17764 3′ DNA-binding domain (3′BD) CTY05_03140 PF00271 Helicase conserved C-terminal domain CTY05_03140 PF00270 DEAD/DEAH box helicase CTY05_03141 PF00999 Sodium/hydrogen exchanger family CTY05_03141 PF02254 TrkA-N domain CTY05_03142 PF01430 Hsp33 protein CTY05_03144 PF01556 DnaJ C terminal domain CTY05_03144 PF00226 DnaJ domain CTY05_03146 PF01544 CorA-like Mg2+ transporter protein CTY05_03147 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CTY05_03147 PF01138 3' exoribonuclease family, domain 1 CTY05_03147 PF03725 3' exoribonuclease family, domain 2 CTY05_03147 PF00575 S1 RNA binding domain CTY05_03147 PF00013 KH domain CTY05_03148 PF00312 Ribosomal protein S15 CTY05_03150 PF13538 UvrD-like helicase C-terminal domain CTY05_03151 PF00580 UvrD/REP helicase N-terminal domain CTY05_03151 PF12705 PD-(D/E)XK nuclease superfamily CTY05_03151 PF13361 UvrD-like helicase C-terminal domain CTY05_03152 PF17946 RecC C-terminal domain CTY05_03154 PF03976 Polyphosphate kinase 2 (PPK2) CTY05_03156 PF01209 ubiE/COQ5 methyltransferase family CTY05_03158 PF03109 ABC1 family CTY05_03159 PF01494 FAD binding domain CTY05_03160 PF01494 FAD binding domain CTY05_03161 PF01502 Phosphoribosyl-AMP cyclohydrolase CTY05_03164 PF13244 Domain of unknown function (DUF4040) CTY05_03164 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CTY05_03164 PF00361 Proton-conducting membrane transporter CTY05_03164 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CTY05_03165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CTY05_03166 PF00361 Proton-conducting membrane transporter CTY05_03168 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CTY05_03170 PF02033 Ribosome-binding factor A CTY05_03171 PF04760 Translation initiation factor IF-2, N-terminal region CTY05_03171 PF08364 Bacterial translation initiation factor IF-2 associated region CTY05_03171 PF11987 Translation-initiation factor 2 CTY05_03171 PF00009 Elongation factor Tu GTP binding domain CTY05_03172 PF00575 S1 RNA binding domain CTY05_03172 PF13184 NusA-like KH domain CTY05_03172 PF08529 NusA N-terminal domain CTY05_03173 PF17384 RimP C-terminal SH3 domain CTY05_03173 PF02576 RimP N-terminal domain CTY05_03177 PF03840 Preprotein translocase SecG subunit CTY05_03178 PF00121 Triosephosphate isomerase CTY05_03179 PF00437 Type II/IV secretion system protein CTY05_03179 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CTY05_03180 PF00482 Type II secretion system (T2SS), protein F CTY05_03181 PF06750 Bacterial Peptidase A24 N-terminal domain CTY05_03181 PF01478 Type IV leader peptidase family CTY05_03182 PF01121 Dephospho-CoA kinase CTY05_03184 PF08032 RNA 2'-O ribose methyltransferase substrate binding CTY05_03184 PF00588 SpoU rRNA Methylase family CTY05_03185 PF06865 Pyrimidine/purine nucleoside phosphorylase CTY05_03187 PF02463 RecF/RecN/SMC N terminal domain CTY05_03188 PF02622 Uncharacterized ACR, COG1678 CTY05_03189 PF03652 Holliday junction resolvase CTY05_03190 PF13533 Biotin-lipoyl like CTY05_03195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CTY05_03195 PF12833 Helix-turn-helix domain CTY05_03195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTY05_03195 PF02805 Metal binding domain of Ada CTY05_03196 PF01066 CDP-alcohol phosphatidyltransferase CTY05_03198 PF01541 GIY-YIG catalytic domain CTY05_03198 PF02151 UvrB/uvrC motif CTY05_03198 PF08459 UvrC Helix-hairpin-helix N-terminal CTY05_03202 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTY05_03202 PF00378 Enoyl-CoA hydratase/isomerase CTY05_03202 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTY05_03203 PF02803 Thiolase, C-terminal domain CTY05_03203 PF00108 Thiolase, N-terminal domain CTY05_03206 PF00376 MerR family regulatory protein CTY05_03206 PF09278 MerR, DNA binding CTY05_03208 PF01323 DSBA-like thioredoxin domain CTY05_03211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_03211 PF00183 Hsp90 protein CTY05_03214 PF03553 Na+/H+ antiporter family CTY05_03214 PF13726 Na+-H+ antiporter family CTY05_03219 PF04997 RNA polymerase Rpb1, domain 1 CTY05_03219 PF00623 RNA polymerase Rpb1, domain 2 CTY05_03219 PF04983 RNA polymerase Rpb1, domain 3 CTY05_03219 PF05000 RNA polymerase Rpb1, domain 4 CTY05_03219 PF04998 RNA polymerase Rpb1, domain 5 CTY05_03220 PF00562 RNA polymerase Rpb2, domain 6 CTY05_03220 PF10385 RNA polymerase beta subunit external 1 domain CTY05_03220 PF04565 RNA polymerase Rpb2, domain 3 CTY05_03220 PF04561 RNA polymerase Rpb2, domain 2 CTY05_03220 PF04560 RNA polymerase Rpb2, domain 7 CTY05_03220 PF04563 RNA polymerase beta subunit CTY05_03221 PF16320 Ribosomal protein L7/L12 dimerisation domain CTY05_03221 PF00542 Ribosomal protein L7/L12 C-terminal domain CTY05_03222 PF00466 Ribosomal protein L10 CTY05_03223 PF00687 Ribosomal protein L1p/L10e family CTY05_03224 PF00298 Ribosomal protein L11, RNA binding domain CTY05_03224 PF03946 Ribosomal protein L11, N-terminal domain CTY05_03225 PF00467 KOW motif CTY05_03225 PF02357 Transcription termination factor nusG CTY05_03226 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CTY05_03228 PF03144 Elongation factor Tu domain 2 CTY05_03228 PF00009 Elongation factor Tu GTP binding domain CTY05_03228 PF03143 Elongation factor Tu C-terminal domain CTY05_03233 PF04715 Anthranilate synthase component I, N terminal region CTY05_03233 PF00425 chorismate binding enzyme CTY05_03234 PF13419 Haloacid dehalogenase-like hydrolase CTY05_03235 PF00498 FHA domain CTY05_03235 PF12401 Protein of unknown function (DUF2662) CTY05_03236 PF03958 Bacterial type II/III secretion system short domain CTY05_03236 PF00263 Bacterial type II and III secretion system protein CTY05_03239 PF00816 H-NS histone family CTY05_03244 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CTY05_03244 PF03900 Porphobilinogen deaminase, C-terminal domain CTY05_03245 PF04397 LytTr DNA-binding domain CTY05_03245 PF00072 Response regulator receiver domain CTY05_03246 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_03246 PF07694 5TMR of 5TMR-LYT CTY05_03246 PF06580 Histidine kinase CTY05_03247 PF14698 Argininosuccinate lyase C-terminal CTY05_03247 PF00206 Lyase CTY05_03248 PF04362 Bacterial Fe(2+) trafficking CTY05_03249 PF01895 PhoU domain CTY05_03250 PF02321 Outer membrane efflux protein CTY05_03251 PF00892 EamA-like transporter family CTY05_03254 PF13667 ThiC-associated domain CTY05_03254 PF01964 Radical SAM ThiC family CTY05_03255 PF00293 NUDIX domain CTY05_03256 PF00149 Calcineurin-like phosphoesterase CTY05_03257 PF01258 Prokaryotic dksA/traR C4-type zinc finger CTY05_03258 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTY05_03259 PF01098 Cell cycle protein CTY05_03260 PF08245 Mur ligase middle domain CTY05_03260 PF02875 Mur ligase family, glutamate ligase domain CTY05_03262 PF07670 Nucleoside recognition CTY05_03262 PF02421 Ferrous iron transport protein B CTY05_03262 PF07664 Ferrous iron transport protein B C terminus CTY05_03264 PF00589 Phage integrase family CTY05_03264 PF02899 Phage integrase, N-terminal SAM-like domain CTY05_03265 PF13098 Thioredoxin-like domain CTY05_03265 PF10411 Disulfide bond isomerase protein N-terminus CTY05_03266 PF00742 Homoserine dehydrogenase CTY05_03266 PF01842 ACT domain CTY05_03266 PF03447 Homoserine dehydrogenase, NAD binding domain CTY05_03267 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_03268 PF00768 D-alanyl-D-alanine carboxypeptidase CTY05_03269 PF00072 Response regulator receiver domain CTY05_03269 PF00196 Bacterial regulatory proteins, luxR family CTY05_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTY05_03270 PF00512 His Kinase A (phospho-acceptor) domain CTY05_03271 PF00158 Sigma-54 interaction domain CTY05_03271 PF00072 Response regulator receiver domain CTY05_03271 PF02954 Bacterial regulatory protein, Fis family CTY05_03272 PF00595 PDZ domain CTY05_03272 PF03572 Peptidase family S41 CTY05_03273 PF01676 Metalloenzyme superfamily CTY05_03273 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CTY05_03274 PF03739 Lipopolysaccharide export system permease LptF/LptG CTY05_03276 PF00883 Cytosol aminopeptidase family, catalytic domain CTY05_03276 PF02789 Cytosol aminopeptidase family, N-terminal domain CTY05_03280 PF00677 Lumazine binding domain CTY05_03282 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTY05_03282 PF01872 RibD C-terminal domain CTY05_03283 PF03477 ATP cone domain CTY05_03284 PF00909 Ammonium Transporter Family CTY05_03285 PF00543 Nitrogen regulatory protein P-II CTY05_03287 PF01078 Magnesium chelatase, subunit ChlI CTY05_03287 PF13335 Magnesium chelatase, subunit ChlI C-terminal CTY05_03288 PF00155 Aminotransferase class I and II CTY05_03288 PF00392 Bacterial regulatory proteins, gntR family CTY05_03290 PF00701 Dihydrodipicolinate synthetase family CTY05_03292 PF03573 outer membrane porin, OprD family CTY05_03293 PF00719 Inorganic pyrophosphatase CTY05_03296 PF00501 AMP-binding enzyme CTY05_03296 PF13193 AMP-binding enzyme C-terminal domain CTY05_03297 PF00521 DNA gyrase/topoisomerase IV, subunit A CTY05_03297 PF03989 DNA gyrase C-terminal domain, beta-propeller CTY05_03298 PF07690 Major Facilitator Superfamily CTY05_03299 PF03458 UPF0126 domain CTY05_03300 PF02810 SEC-C motif CTY05_03301 PF03471 Transporter associated domain CTY05_03301 PF03741 Integral membrane protein TerC family CTY05_03302 PF03641 Possible lysine decarboxylase CTY05_03303 PF07690 Major Facilitator Superfamily CTY05_03305 PF11798 IMS family HHH motif CTY05_03305 PF11799 impB/mucB/samB family C-terminal domain CTY05_03305 PF00817 impB/mucB/samB family CTY05_03308 PF11842 Domain of unknown function (DUF3362) CTY05_03308 PF04055 Radical SAM superfamily CTY05_03308 PF08497 Radical SAM N-terminal CTY05_03312 PF03358 NADPH-dependent FMN reductase CTY05_03314 PF00291 Pyridoxal-phosphate dependent enzyme CTY05_03318 PF00440 Bacterial regulatory proteins, tetR family CTY05_03323 PF01327 Polypeptide deformylase CTY05_03325 PF17782 DprA winged helix domain CTY05_03325 PF02481 DNA recombination-mediator protein A CTY05_03326 PF01300 Telomere recombination CTY05_03327 PF00892 EamA-like transporter family CTY05_03328 PF00440 Bacterial regulatory proteins, tetR family CTY05_03329 PF07690 Major Facilitator Superfamily CTY05_03331 PF00255 Glutathione peroxidase CTY05_03333 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CTY05_03334 PF02874 ATP synthase alpha/beta family, beta-barrel domain CTY05_03334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTY05_03335 PF00231 ATP synthase CTY05_03336 PF00306 ATP synthase alpha/beta chain, C terminal domain CTY05_03336 PF02874 ATP synthase alpha/beta family, beta-barrel domain CTY05_03336 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTY05_03337 PF00213 ATP synthase delta (OSCP) subunit CTY05_03338 PF00430 ATP synthase B/B' CF(0) CTY05_03339 PF00137 ATP synthase subunit C CTY05_03340 PF00119 ATP synthase A chain CTY05_03344 PF00005 ABC transporter CTY05_03345 PF00950 ABC 3 transport family CTY05_03346 PF01810 LysE type translocator CTY05_03347 PF04261 Dyp-type peroxidase family CTY05_03348 PF03949 Malic enzyme, NAD binding domain CTY05_03348 PF00390 Malic enzyme, N-terminal domain CTY05_03349 PF05746 DALR anticodon binding domain CTY05_03349 PF00750 tRNA synthetases class I (R) CTY05_03349 PF03485 Arginyl tRNA synthetase N terminal domain CTY05_03353 PF02678 Pirin CTY05_03353 PF05726 Pirin C-terminal cupin domain CTY05_03355 PF03551 Transcriptional regulator PadR-like family CTY05_03356 PF13427 Domain of unknown function (DUF4111) CTY05_03356 PF01909 Nucleotidyltransferase domain CTY05_03357 PF02540 NAD synthase CTY05_03357 PF00958 GMP synthase C terminal domain CTY05_03357 PF00117 Glutamine amidotransferase class-I CTY05_03358 PF04286 Protein of unknown function (DUF445) CTY05_03359 PF07681 DoxX CTY05_03360 PF09335 SNARE associated Golgi protein CTY05_03363 PF13614 AAA domain CTY05_03365 PF01722 BolA-like protein CTY05_03368 PF01648 4'-phosphopantetheinyl transferase superfamily CTY05_03369 PF12697 Alpha/beta hydrolase family CTY05_03372 PF00501 AMP-binding enzyme CTY05_03372 PF13193 AMP-binding enzyme C-terminal domain CTY05_03372 PF00668 Condensation domain CTY05_03372 PF00550 Phosphopantetheine attachment site CTY05_03372 PF00975 Thioesterase domain CTY05_03373 PF16197 Ketoacyl-synthetase C-terminal extension CTY05_03373 PF14765 Polyketide synthase dehydratase CTY05_03373 PF00975 Thioesterase domain CTY05_03373 PF08242 Methyltransferase domain CTY05_03373 PF02801 Beta-ketoacyl synthase, C-terminal domain CTY05_03373 PF00109 Beta-ketoacyl synthase, N-terminal domain CTY05_03373 PF00550 Phosphopantetheine attachment site CTY05_03374 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_03374 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_03374 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_03375 PF00501 AMP-binding enzyme CTY05_03376 PF00196 Bacterial regulatory proteins, luxR family CTY05_03376 PF03472 Autoinducer binding domain CTY05_03378 PF00765 Autoinducer synthase CTY05_03379 PF07690 Major Facilitator Superfamily CTY05_03379 PF00083 Sugar (and other) transporter CTY05_03380 PF00378 Enoyl-CoA hydratase/isomerase CTY05_03381 PF00378 Enoyl-CoA hydratase/isomerase CTY05_03382 PF02770 Acyl-CoA dehydrogenase, middle domain CTY05_03382 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTY05_03382 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTY05_03383 PF13193 AMP-binding enzyme C-terminal domain CTY05_03383 PF00501 AMP-binding enzyme CTY05_03384 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTY05_03384 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTY05_03385 PF00171 Aldehyde dehydrogenase family CTY05_03387 PF00324 Amino acid permease CTY05_03388 PF00324 Amino acid permease CTY05_03389 PF01042 Endoribonuclease L-PSP CTY05_03390 PF00842 Alanine racemase, C-terminal domain CTY05_03390 PF01168 Alanine racemase, N-terminal domain CTY05_03391 PF01266 FAD dependent oxidoreductase CTY05_03392 PF01037 Lrp/AsnC ligand binding domain CTY05_03394 PF00593 TonB dependent receptor CTY05_03394 PF07715 TonB-dependent Receptor Plug Domain CTY05_03397 PF00849 RNA pseudouridylate synthase CTY05_03401 PF00293 NUDIX domain CTY05_03405 PF00694 Aconitase C-terminal domain CTY05_03405 PF00330 Aconitase family (aconitate hydratase) CTY05_03406 PF00285 Citrate synthase, C-terminal domain CTY05_03408 PF00392 Bacterial regulatory proteins, gntR family CTY05_03408 PF07729 FCD domain CTY05_03409 PF00155 Aminotransferase class I and II CTY05_03410 PF09330 D-lactate dehydrogenase, membrane binding CTY05_03410 PF01565 FAD binding domain CTY05_03411 PF01070 FMN-dependent dehydrogenase CTY05_03412 PF00392 Bacterial regulatory proteins, gntR family CTY05_03412 PF07729 FCD domain CTY05_03413 PF02652 L-lactate permease CTY05_03414 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTY05_03414 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTY05_03414 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTY05_03414 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTY05_03415 PF00342 Phosphoglucose isomerase CTY05_03416 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CTY05_03416 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTY05_03416 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CTY05_03417 PF00483 Nucleotidyl transferase CTY05_03418 PF02719 Polysaccharide biosynthesis protein CTY05_03419 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CTY05_03420 PF14602 Hexapeptide repeat of succinyl-transferase CTY05_03420 PF17836 PglD N-terminal domain CTY05_03420 PF00132 Bacterial transferase hexapeptide (six repeats) CTY05_03421 PF02397 Bacterial sugar transferase CTY05_03422 PF00534 Glycosyl transferases group 1 CTY05_03422 PF13477 Glycosyl transferase 4-like CTY05_03423 PF01757 Acyltransferase family CTY05_03423 PF00842 Alanine racemase, C-terminal domain CTY05_03423 PF01168 Alanine racemase, N-terminal domain CTY05_03425 PF00534 Glycosyl transferases group 1 CTY05_03425 PF13439 Glycosyltransferase Family 4 CTY05_03427 PF01370 NAD dependent epimerase/dehydratase family CTY05_03428 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CTY05_03428 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTY05_03428 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CTY05_03429 PF10531 SLBB domain CTY05_03429 PF02563 Polysaccharide biosynthesis/export protein CTY05_03429 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CTY05_03430 PF01451 Low molecular weight phosphotyrosine protein phosphatase CTY05_03431 PF02706 Chain length determinant protein CTY05_03431 PF13807 G-rich domain on putative tyrosine kinase CTY05_03431 PF13614 AAA domain CTY05_03432 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTY05_03432 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTY05_03433 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTY05_03433 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTY05_03434 PF03023 Lipid II flippase MurJ CTY05_03435 PF01510 N-acetylmuramoyl-L-alanine amidase CTY05_03436 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CTY05_03436 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CTY05_03438 PF04185 Phosphoesterase family CTY05_03438 PF05506 Domain of unknown function (DUF756) CTY05_03439 PF03725 3' exoribonuclease family, domain 2 CTY05_03439 PF01138 3' exoribonuclease family, domain 1 CTY05_03440 PF00487 Fatty acid desaturase CTY05_03441 PF00175 Oxidoreductase NAD-binding domain CTY05_03442 PF00440 Bacterial regulatory proteins, tetR family CTY05_03443 PF08360 QacR-like protein, C-terminal region CTY05_03443 PF00440 Bacterial regulatory proteins, tetR family CTY05_03444 PF01323 DSBA-like thioredoxin domain CTY05_03446 PF13419 Haloacid dehalogenase-like hydrolase CTY05_03447 PF00106 short chain dehydrogenase CTY05_03450 PF00696 Amino acid kinase family CTY05_03450 PF00583 Acetyltransferase (GNAT) family CTY05_03451 PF09084 NMT1/THI5 like CTY05_03452 PF09084 NMT1/THI5 like CTY05_03453 PF00296 Luciferase-like monooxygenase CTY05_03454 PF00528 Binding-protein-dependent transport system inner membrane component CTY05_03455 PF00005 ABC transporter CTY05_03456 PF08362 YcdC-like protein, C-terminal region CTY05_03456 PF00440 Bacterial regulatory proteins, tetR family CTY05_03457 PF01048 Phosphorylase superfamily CTY05_03459 PF01687 Riboflavin kinase CTY05_03459 PF06574 FAD synthetase CTY05_03460 PF08264 Anticodon-binding domain of tRNA CTY05_03460 PF06827 Zinc finger found in FPG and IleRS CTY05_03460 PF00133 tRNA synthetases class I (I, L, M and V) CTY05_03461 PF01252 Signal peptidase (SPase) II CTY05_03462 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTY05_03467 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CTY05_03468 PF07859 alpha/beta hydrolase fold CTY05_03472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTY05_03472 PF03466 LysR substrate binding domain CTY05_03473 PF01025 GrpE CTY05_03474 PF00012 Hsp70 protein CTY05_03478 PF13406 Transglycosylase SLT domain CTY05_03480 PF02222 ATP-grasp domain CTY05_03480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CTY05_03481 PF00731 AIR carboxylase CTY05_03483 PF08245 Mur ligase middle domain CTY05_03483 PF02875 Mur ligase family, glutamate ligase domain CTY05_03483 PF01225 Mur ligase family, catalytic domain CTY05_03485 PF01569 PAP2 superfamily CTY05_03486 PF03741 Integral membrane protein TerC family CTY05_03488 PF03738 Glutathionylspermidine synthase preATP-grasp CTY05_03489 PF00355 Rieske [2Fe-2S] domain CTY05_03490 PF01979 Amidohydrolase family CTY05_03492 PF00156 Phosphoribosyl transferase domain CTY05_03494 PF13098 Thioredoxin-like domain CTY05_03494 PF10411 Disulfide bond isomerase protein N-terminus CTY05_03495 PF16916 Dimerisation domain of Zinc Transporter CTY05_03495 PF01545 Cation efflux family CTY05_03496 PF02583 Metal-sensitive transcriptional repressor CTY05_03497 PF01926 50S ribosome-binding GTPase CTY05_03497 PF10396 GTP-binding protein TrmE N-terminus CTY05_03497 PF12631 MnmE helical domain CTY05_03498 PF02096 60Kd inner membrane protein CTY05_03498 PF14849 YidC periplasmic domain CTY05_03499 PF01809 Putative membrane protein insertion efficiency factor CTY05_03500 PF00825 Ribonuclease P CTY05_03501 PF00468 Ribosomal protein L34