locus-tag	class	description
CTY05_00002	COG0592	DNA-directed DNA polymerase activity
CTY05_00004	COG0187	DNA topoisomerase II activity
CTY05_00006	COG0586	Pfam SNARE associated Golgi protein
CTY05_00007	COG0488	(ABC) transporter
CTY05_00012	COG0596	Alpha beta hydrolase
CTY05_00013	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CTY05_00014	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CTY05_00019	COG0733	neurotransmitter:sodium symporter activity
CTY05_00026	COG0583	DNA-binding transcription factor activity
CTY05_00027	COG2233	PERMEase
CTY05_00030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTY05_00037	COG2814	Major facilitator Superfamily
CTY05_00038	COG0656	L-ascorbic acid biosynthetic process
CTY05_00039	COG0583	DNA-binding transcription factor activity
CTY05_00041	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTY05_00042	COG1064	alcohol dehydrogenase
CTY05_00043	COG2818	Glycosylase
CTY05_00046	COG1194	a g-specific adenine glycosylase
CTY05_00050	COG2983	Belongs to the UPF0260 family
CTY05_00051	COG2133	pyrroloquinoline quinone binding
CTY05_00052	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CTY05_00053	COG2116	formate transmembrane transporter activity
CTY05_00057	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CTY05_00058	COG1335	isochorismatase
CTY05_00059	COG0385	Bile acid
CTY05_00060	COG0534	Mate efflux family protein
CTY05_00061	COG1683	Conserved Protein
CTY05_00065	COG0625	glutathione transferase activity
CTY05_00067	COG1113	amino acid transport
CTY05_00069	COG0523	cobalamin synthesis protein
CTY05_00071	COG2188	Transcriptional regulator
CTY05_00077	COG0010	Belongs to the arginase family
CTY05_00080	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CTY05_00085	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CTY05_00087	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CTY05_00088	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CTY05_00105	COG0534	Mate efflux family protein
CTY05_00106	COG0436	Aminotransferase
CTY05_00107	COG2733	membrane
CTY05_00110	COG2918	glutathione biosynthetic process
CTY05_00112	COG3501	Rhs element vgr protein
CTY05_00113	COG1388	LysM domain
CTY05_00113	COG3409	Peptidoglycan-binding domain 1 protein
CTY05_00113	COG5632	N-Acetylmuramoyl-L-alanine amidase
CTY05_00119	COG3150	esterase
CTY05_00121	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
CTY05_00123	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTY05_00125	COG2233	PERMEase
CTY05_00126	COG2351	hydroxyisourate hydrolase activity
CTY05_00133	COG3706	GGDEF domain
CTY05_00136	COG1393	Belongs to the ArsC family
CTY05_00137	COG0708	Exodeoxyribonuclease III
CTY05_00141	COG0189	ligase activity
CTY05_00145	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CTY05_00147	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CTY05_00150	COG4942	peptidase
CTY05_00152	COG0508	dehydrogenase complex catalyzes the overall conversion of
CTY05_00154	COG2119	membrane
CTY05_00155	COG4774	siderophore transport
CTY05_00156	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTY05_00156	COG0426	domain, Protein
CTY05_00161	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CTY05_00166	COG1902	pentaerythritol trinitrate reductase activity
CTY05_00167	COG1519	Transferase
CTY05_00168	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CTY05_00169	COG0668	transmembrane transport
CTY05_00171	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CTY05_00172	COG1335	isochorismatase
CTY05_00173	COG1522	sequence-specific DNA binding
CTY05_00178	COG2205	protein histidine kinase activity
CTY05_00178	COG2198	Histidine kinase
CTY05_00178	COG0784	Response regulator, receiver
CTY05_00179	COG3162	membrane
CTY05_00180	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CTY05_00182	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CTY05_00184	COG3706	GGDEF domain
CTY05_00185	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CTY05_00186	COG1309	transcriptional regulator
CTY05_00190	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CTY05_00190	COG0352	thiamine-phosphate diphosphorylase activity
CTY05_00190	COG0351	phosphomethylpyrimidine kinase
CTY05_00192	COG2814	Major facilitator Superfamily
CTY05_00195	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CTY05_00197	COG1113	amino acid transport
CTY05_00199	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CTY05_00200	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_00202	COG1335	isochorismatase
CTY05_00214	COG1401	restriction endodeoxyribonuclease activity
CTY05_00221	COG1073	alpha beta
CTY05_00222	COG0583	DNA-binding transcription factor activity
CTY05_00225	COG1309	transcriptional regulator
CTY05_00244	COG2814	Major facilitator Superfamily
CTY05_00245	COG0583	DNA-binding transcription factor activity
CTY05_00249	COG0667	Aldo Keto reductase
CTY05_00253	COG1733	regulation of RNA biosynthetic process
CTY05_00256	COG1733	regulation of RNA biosynthetic process
CTY05_00257	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTY05_00259	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CTY05_00270	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CTY05_00278	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CTY05_00284	COG0427	acetyl-CoA hydrolase
CTY05_00286	COG0745	RESPONSE REGULATOR receiver
CTY05_00288	COG0659	secondary active sulfate transmembrane transporter activity
CTY05_00289	COG4221	oxidoreductase activity
CTY05_00291	COG0488	(ABC) transporter
CTY05_00304	COG0833	amino acid
CTY05_00313	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CTY05_00314	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CTY05_00317	COG2226	methyltransferase
CTY05_00327	COG0067	glutamate synthase
CTY05_00327	COG0069	glutamate synthase activity
CTY05_00327	COG0070	glutamate synthase
CTY05_00328	COG0493	'glutamate synthase
CTY05_00330	COG1704	LemA family
CTY05_00331	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CTY05_00334	COG3307	-O-antigen
CTY05_00338	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CTY05_00340	COG0194	GDP metabolic process
CTY05_00350	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CTY05_00354	COG5380	lipid catabolic process
CTY05_00355	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CTY05_00360	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CTY05_00361	COG0277	FAD linked oxidase domain protein
CTY05_00363	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CTY05_00364	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTY05_00367	COG1289	transmembrane transporter activity
CTY05_00369	COG0628	permease
CTY05_00376	COG0833	amino acid
CTY05_00377	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CTY05_00378	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CTY05_00380	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_00388	COG0583	DNA-binding transcription factor activity
CTY05_00398	COG0517	IMP dehydrogenase activity
CTY05_00399	COG1983	PspC domain protein
CTY05_00401	COG1960	acyl-CoA dehydrogenase activity
CTY05_00404	COG0408	coproporphyrinogen oxidase activity
CTY05_00408	COG0513	Belongs to the DEAD box helicase family
CTY05_00410	COG1127	ABC transporter
CTY05_00411	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CTY05_00413	COG2854	intermembrane phospholipid transfer
CTY05_00415	COG0598	Magnesium transport protein CorA
CTY05_00417	COG0494	nUDIX hydrolase
CTY05_00418	COG1040	competence protein
CTY05_00419	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CTY05_00423	COG1946	Acyl-CoA thioesterase
CTY05_00424	COG1301	dicarboxylic acid transport
CTY05_00427	COG1959	2 iron, 2 sulfur cluster binding
CTY05_00428	COG1017	nitric oxide dioxygenase activity
CTY05_00428	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTY05_00429	COG0433	COG0433 Predicted ATPase
CTY05_00430	COG0626	cystathionine gamma-synthase activity
CTY05_00454	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CTY05_00456	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CTY05_00461	COG1960	acyl-CoA dehydrogenase activity
CTY05_00462	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CTY05_00469	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CTY05_00470	COG0339	signal peptide processing
CTY05_00471	COG0557	exoribonuclease II activity
CTY05_00480	COG0179	Fumarylacetoacetate (FAA) hydrolase
CTY05_00481	COG2169	Transcriptional regulator
CTY05_00482	COG0697	spore germination
CTY05_00483	COG1295	ribonuclease BN
CTY05_00490	COG1702	phosphate starvation-inducible protein PhoH
CTY05_00492	COG1196	nuclear chromosome segregation
CTY05_00492	COG0739	heme binding
CTY05_00492	COG0741	lytic transglycosylase activity
CTY05_00498	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CTY05_00499	COG1183	phosphatidylcholine synthase activity
CTY05_00505	COG1960	acyl-CoA dehydrogenase activity
CTY05_00506	COG1309	transcriptional regulator
CTY05_00509	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CTY05_00510	COG1960	acyl-CoA dehydrogenase activity
CTY05_00514	COG2969	positive regulation of protein catabolic process
CTY05_00516	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CTY05_00519	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CTY05_00520	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CTY05_00524	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CTY05_00526	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CTY05_00527	COG1408	metallophosphoesterase
CTY05_00529	COG2199	diguanylate cyclase activity
CTY05_00535	COG3453	Protein conserved in bacteria
CTY05_00535	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CTY05_00538	COG1607	acyl-coa hydrolase
CTY05_00544	COG2350	Protein conserved in bacteria
CTY05_00546	COG0613	PHP domain protein
CTY05_00547	COG3781	membrane
CTY05_00549	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CTY05_00552	COG1862	Preprotein translocase
CTY05_00558	COG2205	protein histidine kinase activity
CTY05_00559	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CTY05_00563	COG0726	polysaccharide deacetylase
CTY05_00564	COG0463	Glycosyl transferase, family 2
CTY05_00565	COG0438	transferase activity, transferring glycosyl groups
CTY05_00578	COG1960	acyl-CoA dehydrogenase activity
CTY05_00579	COG1960	acyl-CoA dehydrogenase activity
CTY05_00581	COG2205	protein histidine kinase activity
CTY05_00582	COG0745	RESPONSE REGULATOR receiver
CTY05_00583	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CTY05_00587	COG2096	Adenosyltransferase
CTY05_00590	COG0133	tryptophan synthase activity
CTY05_00597	COG0285	dihydrofolate synthase activity
CTY05_00601	COG0450	alkyl hydroperoxide reductase
CTY05_00604	COG0477	Major facilitator Superfamily
CTY05_00605	COG1272	protein, Hemolysin III
CTY05_00607	COG2153	protein acetylation
CTY05_00611	COG0183	Belongs to the thiolase family
CTY05_00612	COG2207	Transcriptional regulator
CTY05_00616	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CTY05_00620	COG0183	Belongs to the thiolase family
CTY05_00622	COG2885	chlorophyll binding
CTY05_00622	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CTY05_00624	COG1690	Belongs to the RtcB family
CTY05_00625	COG0833	amino acid
CTY05_00627	COG2233	PERMEase
CTY05_00633	COG2094	Belongs to the DNA glycosylase MPG family
CTY05_00634	COG4772	TonB-dependent receptor
CTY05_00635	COG1902	pentaerythritol trinitrate reductase activity
CTY05_00636	COG0679	Auxin Efflux Carrier
CTY05_00638	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CTY05_00639	COG0354	folic acid binding
CTY05_00641	COG3189	MarR family transcriptional regulator
CTY05_00642	COG2824	Alkylphosphonate utilization operon protein PhnA
CTY05_00643	COG3422	double-strand break repair
CTY05_00651	COG0840	transmembrane signaling receptor activity
CTY05_00654	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CTY05_00657	COG5510	response to toxic substance
CTY05_00659	COG2832	Protein of unknown function (DUF454)
CTY05_00660	COG1376	ErfK ybiS ycfS ynhG family protein
CTY05_00670	COG1289	transmembrane transporter activity
CTY05_00671	COG2814	Major facilitator Superfamily
CTY05_00674	COG1115	amino acid carrier protein
CTY05_00675	COG1752	Esterase of the alpha-beta hydrolase superfamily
CTY05_00676	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CTY05_00677	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CTY05_00682	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CTY05_00684	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CTY05_00685	COG1077	Cell shape determining protein MreB Mrl
CTY05_00686	COG1792	Involved in formation and maintenance of cell shape
CTY05_00687	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CTY05_00688	COG0424	maF-like protein
CTY05_00689	COG1530	ribonuclease E activity
CTY05_00691	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CTY05_00695	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTY05_00701	COG2207	Transcriptional regulator
CTY05_00705	COG1113	amino acid transport
CTY05_00706	COG2828	Protein conserved in bacteria
CTY05_00707	COG0142	geranyltranstransferase activity
CTY05_00708	COG2315	Protein conserved in bacteria
CTY05_00711	COG1752	Esterase of the alpha-beta hydrolase superfamily
CTY05_00715	COG2194	sulfuric ester hydrolase activity
CTY05_00716	COG0745	RESPONSE REGULATOR receiver
CTY05_00717	COG0642	Histidine kinase
CTY05_00719	COG0004	ammonium transporteR
CTY05_00720	COG0583	DNA-binding transcription factor activity
CTY05_00724	COG0525	valine-tRNA ligase activity
CTY05_00726	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_00728	COG0393	Putative heavy-metal-binding
CTY05_00729	COG0393	Putative heavy-metal-binding
CTY05_00730	COG1538	Outer membrane efflux protein
CTY05_00732	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTY05_00733	COG0671	phosphoesterase, PA-phosphatase related
CTY05_00738	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CTY05_00741	COG1648	precorrin-2 dehydrogenase activity
CTY05_00741	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CTY05_00742	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CTY05_00743	COG1733	regulation of RNA biosynthetic process
CTY05_00745	COG0531	amino acid
CTY05_00748	COG0321	lipoyl(octanoyl) transferase activity
CTY05_00749	COG2921	Belongs to the UPF0250 family
CTY05_00756	COG2009	succinate dehydrogenase
CTY05_00757	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CTY05_00758	COG1053	succinate dehydrogenase
CTY05_00759	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CTY05_00762	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CTY05_00768	COG2354	Protein conserved in bacteria
CTY05_00769	COG2321	neutral zinc metallopeptidase
CTY05_00773	COG2843	Capsule synthesis protein
CTY05_00776	COG0589	response to stress
CTY05_00780	COG0505	Belongs to the CarA family
CTY05_00785	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CTY05_00786	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CTY05_00796	COG0477	Major facilitator Superfamily
CTY05_00797	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CTY05_00801	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CTY05_00806	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CTY05_00807	COG0584	glycerophosphoryl diester phosphodiesterase
CTY05_00811	COG0741	lytic transglycosylase activity
CTY05_00815	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CTY05_00818	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CTY05_00825	COG0778	Nitroreductase
CTY05_00828	COG1929	Belongs to the glycerate kinase type-1 family
CTY05_00829	COG0243	molybdopterin cofactor binding
CTY05_00830	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CTY05_00831	COG3339	Conserved Protein
CTY05_00833	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
CTY05_00836	COG1113	amino acid transport
CTY05_00838	COG0019	diaminopimelate decarboxylase activity
CTY05_00840	COG2267	carboxylic ester hydrolase activity
CTY05_00841	COG1280	lysine exporter protein (LysE YggA)
CTY05_00842	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CTY05_00848	COG0463	Glycosyl transferase, family 2
CTY05_00852	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTY05_00859	COG4591	ABC-type transport system involved in lipoprotein release permease component
CTY05_00860	COG1136	(ABC) transporter
CTY05_00861	COG2333	competence protein COMEC
CTY05_00861	COG0658	competence protein
CTY05_00863	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CTY05_00863	COG0616	signal peptide processing
CTY05_00864	COG0596	Alpha beta hydrolase
CTY05_00865	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CTY05_00867	COG0628	permease
CTY05_00874	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CTY05_00878	COG0823	Involved in the tonB-independent uptake of proteins
CTY05_00882	COG0824	Thioesterase
CTY05_00883	COG1473	amidohydrolase
CTY05_00887	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CTY05_00887	COG0047	phosphoribosylformylglycinamidine synthase activity
CTY05_00888	COG2814	Major facilitator Superfamily
CTY05_00890	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CTY05_00891	COG1024	Enoyl-CoA hydratase
CTY05_00892	COG1056	cytidyltransferase-related domain
CTY05_00892	COG1051	belongs to the nudix hydrolase family
CTY05_00894	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CTY05_00897	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CTY05_00900	COG4625	pathogenesis
CTY05_00901	COG0583	DNA-binding transcription factor activity
CTY05_00902	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CTY05_00903	COG4208	sulfate ABC transporter
CTY05_00904	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CTY05_00906	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CTY05_00907	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CTY05_00908	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CTY05_00912	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CTY05_00915	COG0681	Belongs to the peptidase S26 family
CTY05_00918	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CTY05_00920	COG1381	Involved in DNA repair and RecF pathway recombination
CTY05_00921	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CTY05_00923	COG4221	oxidoreductase activity
CTY05_00932	COG0556	nucleotide-excision repair
CTY05_00943	COG2070	2-Nitropropane dioxygenase
CTY05_00949	COG1215	transferase activity, transferring glycosyl groups
CTY05_00952	COG0415	Belongs to the DNA photolyase family
CTY05_00954	COG1252	NADH dehydrogenase
CTY05_00955	COG1686	Belongs to the peptidase S11 family
CTY05_00958	COG1187	pseudouridine synthase activity
CTY05_00963	COG0477	Major facilitator Superfamily
CTY05_00964	COG0583	DNA-binding transcription factor activity
CTY05_00967	COG0612	Peptidase, M16
CTY05_00973	COG1203	CRISPR-associated helicase, Cas3
CTY05_00978	COG0352	thiamine-phosphate diphosphorylase activity
CTY05_00985	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTY05_00988	COG1309	transcriptional regulator
CTY05_00990	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CTY05_00991	COG0076	glutamate decarboxylase activity
CTY05_00993	COG1522	sequence-specific DNA binding
CTY05_00994	COG3961	Belongs to the TPP enzyme family
CTY05_00995	COG1113	amino acid transport
CTY05_00996	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CTY05_00997	COG0573	inorganic phosphate transmembrane transporter activity
CTY05_00999	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CTY05_01000	COG0616	signal peptide processing
CTY05_01007	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CTY05_01008	COG1686	Belongs to the peptidase S11 family
CTY05_01013	COG0583	DNA-binding transcription factor activity
CTY05_01014	COG1067	ATP-dependent peptidase activity
CTY05_01019	COG4943	cyclic-guanylate-specific phosphodiesterase activity
CTY05_01023	COG1966	Carbon starvation protein
CTY05_01024	COG2879	small protein
CTY05_01032	COG1741	Belongs to the pirin family
CTY05_01034	COG2964	Protein conserved in bacteria
CTY05_01037	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CTY05_01040	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CTY05_01041	COG4605	iron ion homeostasis
CTY05_01042	COG4604	ABC transporter, ATP-binding protein
CTY05_01043	COG4607	ABC-type enterochelin transport system periplasmic component
CTY05_01044	COG4774	siderophore transport
CTY05_01046	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CTY05_01047	COG1021	2,3-dihydroxybenzoate-AMP ligase
CTY05_01048	COG3433	isochorismatase activity
CTY05_01048	COG1535	isochorismatase
CTY05_01051	COG1132	(ABC) transporter
CTY05_01053	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
CTY05_01055	COG1169	isochorismate synthase
CTY05_01058	COG3739	integral membrane protein
CTY05_01064	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CTY05_01070	COG0308	aminopeptidase N
CTY05_01071	COG0512	Glutamine amidotransferase of anthranilate synthase
CTY05_01073	COG3104	oligopeptide transport
CTY05_01076	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CTY05_01083	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CTY05_01084	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CTY05_01085	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CTY05_01089	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CTY05_01090	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CTY05_01091	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CTY05_01094	COG1960	acyl-CoA dehydrogenase activity
CTY05_01095	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CTY05_01096	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CTY05_01099	COG2223	nitrite transmembrane transporter activity
CTY05_01101	COG0024	Methionine aminopeptidase
CTY05_01102	COG0052	Belongs to the universal ribosomal protein uS2 family
CTY05_01105	COG2207	Transcriptional regulator
CTY05_01110	COG2951	lytic endotransglycosylase activity
CTY05_01111	COG0772	Belongs to the SEDS family
CTY05_01114	COG0842	Transport permease protein
CTY05_01115	COG1131	(ABC) transporter
CTY05_01121	COG1538	Outer membrane efflux protein
CTY05_01123	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTY05_01126	COG4215	(ABC) transporter
CTY05_01127	COG4160	amino acid transport
CTY05_01128	COG4598	ABC transporter
CTY05_01130	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CTY05_01132	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTY05_01135	COG1720	tRNA m6t6A37 methyltransferase activity
CTY05_01139	COG0745	RESPONSE REGULATOR receiver
CTY05_01140	COG0642	Histidine kinase
CTY05_01142	COG0494	nUDIX hydrolase
CTY05_01144	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CTY05_01145	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CTY05_01146	COG3139	Protein of unknown function (DUF1315)
CTY05_01147	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CTY05_01148	COG1301	dicarboxylic acid transport
CTY05_01149	COG1960	acyl-CoA dehydrogenase activity
CTY05_01150	COG2819	hydrolase of the alpha beta superfamily
CTY05_01152	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CTY05_01154	COG2195	Cleaves the N-terminal amino acid of tripeptides
CTY05_01155	COG1234	tRNA 3'-trailer cleavage
CTY05_01160	COG2363	Small membrane protein
CTY05_01164	COG0513	Belongs to the DEAD box helicase family
CTY05_01166	COG0778	Nitroreductase
CTY05_01172	COG1286	toxin biosynthetic process
CTY05_01177	COG4783	chaperone-mediated protein folding
CTY05_01178	COG1610	YqeY-like protein
CTY05_01179	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CTY05_01198	COG3111	PFAM Bacterial OB fold (BOF) protein
CTY05_01203	COG3243	poly(R)-hydroxyalkanoic acid synthase
CTY05_01204	COG0786	glutamate:sodium symporter activity
CTY05_01206	COG0583	DNA-binding transcription factor activity
CTY05_01208	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01211	COG2186	Transcriptional regulator
CTY05_01223	COG0477	Major facilitator Superfamily
CTY05_01227	COG2995	paraquat-inducible protein a
CTY05_01228	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CTY05_01228	COG3008	intermembrane lipid transfer
CTY05_01230	COG2351	hydroxyisourate hydrolase activity
CTY05_01238	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CTY05_01240	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CTY05_01241	COG0642	Histidine kinase
CTY05_01242	COG0745	RESPONSE REGULATOR receiver
CTY05_01246	COG1794	racemase activity, acting on amino acids and derivatives
CTY05_01252	COG1301	dicarboxylic acid transport
CTY05_01254	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CTY05_01255	COG2011	ABC-type metal ion transport system permease component
CTY05_01256	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CTY05_01257	COG1464	Belongs to the NlpA lipoprotein family
CTY05_01258	COG0151	Belongs to the GarS family
CTY05_01259	COG0138	bifunctional purine biosynthesis protein purh
CTY05_01260	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CTY05_01266	COG2308	Evidence 4 Homologs of previously reported genes of
CTY05_01268	COG1305	Transglutaminase-like
CTY05_01270	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CTY05_01271	COG0305	Participates in initiation and elongation during chromosome replication
CTY05_01276	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CTY05_01278	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CTY05_01279	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CTY05_01284	COG1649	PFAM Uncharacterised BCR, COG1649
CTY05_01284	COG0726	polysaccharide deacetylase
CTY05_01285	COG1215	transferase activity, transferring glycosyl groups
CTY05_01286	COG3658	cytochrome
CTY05_01288	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CTY05_01291	COG0583	DNA-binding transcription factor activity
CTY05_01295	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTY05_01296	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CTY05_01299	COG1960	acyl-CoA dehydrogenase activity
CTY05_01300	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CTY05_01301	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTY05_01306	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CTY05_01307	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CTY05_01309	COG2205	protein histidine kinase activity
CTY05_01310	COG0745	RESPONSE REGULATOR receiver
CTY05_01311	COG0174	glutamine synthetase
CTY05_01315	COG0729	surface antigen
CTY05_01320	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CTY05_01321	COG2814	Major facilitator Superfamily
CTY05_01324	COG0583	DNA-binding transcription factor activity
CTY05_01327	COG1187	pseudouridine synthase activity
CTY05_01331	COG0802	atpase or kinase
CTY05_01332	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CTY05_01334	COG1923	regulation of RNA biosynthetic process
CTY05_01335	COG0697	spore germination
CTY05_01340	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CTY05_01340	COG0519	Catalyzes the synthesis of GMP from XMP
CTY05_01341	COG4302	ethanolamine ammonia-lyase activity
CTY05_01342	COG4303	Ethanolamine ammonia lyase large subunit
CTY05_01343	COG0531	amino acid
CTY05_01347	COG1454	alcohol dehydrogenase
CTY05_01348	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CTY05_01353	COG0308	aminopeptidase N
CTY05_01361	COG1605	Chorismate mutase
CTY05_01364	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CTY05_01367	COG1309	transcriptional regulator
CTY05_01369	COG0668	transmembrane transport
CTY05_01375	COG4773	Receptor
CTY05_01379	COG0488	(ABC) transporter
CTY05_01380	COG0589	response to stress
CTY05_01384	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CTY05_01386	COG3135	benzoate transporter
CTY05_01387	COG1522	sequence-specific DNA binding
CTY05_01390	COG0583	DNA-binding transcription factor activity
CTY05_01392	COG0183	Belongs to the thiolase family
CTY05_01398	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CTY05_01401	COG0824	Thioesterase
CTY05_01402	COG1454	alcohol dehydrogenase
CTY05_01404	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CTY05_01408	COG0069	glutamate synthase activity
CTY05_01412	COG2814	Major facilitator Superfamily
CTY05_01415	COG0511	ligase activity, forming carbon-carbon bonds
CTY05_01418	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CTY05_01418	COG1116	anion transmembrane transporter activity
CTY05_01419	COG0745	RESPONSE REGULATOR receiver
CTY05_01421	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CTY05_01421	COG2146	nitrite reductase [NAD(P)H] activity
CTY05_01422	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CTY05_01423	COG0243	molybdopterin cofactor binding
CTY05_01425	COG0243	molybdopterin cofactor binding
CTY05_01426	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CTY05_01429	COG0521	Mo-molybdopterin cofactor biosynthetic process
CTY05_01429	COG0315	cyclic pyranopterin monophosphate synthase activity
CTY05_01430	COG0303	'Molybdopterin
CTY05_01433	COG0697	spore germination
CTY05_01437	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CTY05_01438	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CTY05_01449	COG2204	response regulator
CTY05_01450	COG3852	Histidine kinase
CTY05_01454	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CTY05_01455	COG0575	Belongs to the CDS family
CTY05_01462	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CTY05_01464	COG2137	regulation of response to DNA damage stimulus
CTY05_01466	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CTY05_01467	COG1011	Hydrolase
CTY05_01472	COG1522	sequence-specific DNA binding
CTY05_01474	COG1113	amino acid transport
CTY05_01477	COG0659	secondary active sulfate transmembrane transporter activity
CTY05_01478	COG2135	peptidase activity
CTY05_01481	COG3300	MHYT domain
CTY05_01481	COG5001	Diguanylate cyclase
CTY05_01485	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CTY05_01485	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CTY05_01485	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CTY05_01486	COG1105	Belongs to the carbohydrate kinase PfkB family
CTY05_01487	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CTY05_01487	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTY05_01493	COG0024	Methionine aminopeptidase
CTY05_01494	COG0583	DNA-binding transcription factor activity
CTY05_01496	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CTY05_01497	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CTY05_01498	COG0516	GMP reductase activity
CTY05_01498	COG0517	IMP dehydrogenase activity
CTY05_01503	COG0552	protein localization to endoplasmic reticulum
CTY05_01505	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
CTY05_01507	COG4890	Cyd operon protein YbgT
CTY05_01508	COG1294	oxidase, subunit
CTY05_01511	COG1585	Membrane protein implicated in regulation of membrane protease activity
CTY05_01513	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CTY05_01514	COG4774	siderophore transport
CTY05_01517	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CTY05_01518	COG0569	domain protein
CTY05_01519	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CTY05_01525	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CTY05_01526	COG0542	response to heat
CTY05_01528	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CTY05_01531	COG0446	pyridine nucleotide-disulphide oxidoreductase
CTY05_01531	COG1902	pentaerythritol trinitrate reductase activity
CTY05_01540	COG2323	membrane
CTY05_01541	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CTY05_01543	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CTY05_01544	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CTY05_01545	COG0183	Belongs to the thiolase family
CTY05_01546	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CTY05_01547	COG0596	Alpha beta hydrolase
CTY05_01548	COG2271	Major facilitator Superfamily
CTY05_01549	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CTY05_01550	COG3485	protocatechuate 3,4-dioxygenase
CTY05_01551	COG3485	protocatechuate 3,4-dioxygenase
CTY05_01552	COG0710	3-dehydroquinate dehydratase activity
CTY05_01553	COG3420	alginic acid biosynthetic process
CTY05_01554	COG3659	wide pore channel activity
CTY05_01555	COG4993	Dehydrogenase
CTY05_01557	COG2391	methyltransferase activity
CTY05_01560	COG1414	Transcriptional regulator
CTY05_01561	COG0583	DNA-binding transcription factor activity
CTY05_01562	COG1960	acyl-CoA dehydrogenase activity
CTY05_01567	COG2814	Major facilitator Superfamily
CTY05_01569	COG0154	amidase activity
CTY05_01573	COG4638	Rieske (2fe-2S)
CTY05_01575	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01577	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTY05_01579	COG3733	amine oxidase
CTY05_01581	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_01583	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CTY05_01584	COG0183	Belongs to the thiolase family
CTY05_01585	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CTY05_01586	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CTY05_01588	COG4829	muconolactone delta-isomerase
CTY05_01589	COG4948	Mandelate Racemase Muconate Lactonizing
CTY05_01590	COG0583	DNA-binding transcription factor activity
CTY05_01592	COG2186	Transcriptional regulator
CTY05_01596	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_01599	COG1902	pentaerythritol trinitrate reductase activity
CTY05_01599	COG0446	pyridine nucleotide-disulphide oxidoreductase
CTY05_01607	COG1309	transcriptional regulator
CTY05_01609	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01610	COG4689	acetoacetate decarboxylase
CTY05_01612	COG1902	pentaerythritol trinitrate reductase activity
CTY05_01617	COG1335	isochorismatase
CTY05_01618	COG0583	DNA-binding transcription factor activity
CTY05_01620	COG0475	glutathione-regulated potassium exporter activity
CTY05_01620	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CTY05_01622	COG1473	amidohydrolase
CTY05_01638	COG0583	DNA-binding transcription factor activity
CTY05_01641	COG1566	PFAM secretion protein HlyD family protein
CTY05_01644	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_01645	COG0129	dihydroxy-acid dehydratase activity
CTY05_01647	COG0583	DNA-binding transcription factor activity
CTY05_01648	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CTY05_01650	COG2084	Dehydrogenase
CTY05_01651	COG2207	Transcriptional regulator
CTY05_01652	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CTY05_01665	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CTY05_01668	COG0556	nucleotide-excision repair
CTY05_01674	COG1073	alpha beta
CTY05_01676	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01679	COG2207	Transcriptional regulator
CTY05_01681	COG2205	protein histidine kinase activity
CTY05_01682	COG0745	RESPONSE REGULATOR receiver
CTY05_01683	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTY05_01684	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CTY05_01685	COG1538	Outer membrane efflux protein
CTY05_01687	COG2072	flavoprotein involved in K transport
CTY05_01689	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CTY05_01693	COG3539	Fimbrial protein
CTY05_01698	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CTY05_01700	COG0753	catalase activity
CTY05_01703	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CTY05_01715	COG1535	isochorismatase
CTY05_01715	COG3433	isochorismatase activity
CTY05_01716	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01717	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CTY05_01718	COG4149	molybdate abc transporter
CTY05_01719	COG0725	ABC transporter, periplasmic molybdate-binding protein
CTY05_01721	COG4638	Rieske (2fe-2S)
CTY05_01722	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
CTY05_01723	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTY05_01723	COG0543	2 iron, 2 sulfur cluster binding
CTY05_01726	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTY05_01728	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01729	COG0412	Dienelactone hydrolase
CTY05_01731	COG2207	Transcriptional regulator
CTY05_01732	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_01733	COG2610	gluconate transmembrane transporter activity
CTY05_01735	COG0583	DNA-binding transcription factor activity
CTY05_01738	COG2031	fatty acid transporter
CTY05_01739	COG0183	Belongs to the thiolase family
CTY05_01740	COG0583	DNA-binding transcription factor activity
CTY05_01741	COG0583	DNA-binding transcription factor activity
CTY05_01744	COG1027	Aspartate ammonia-lyase
CTY05_01746	COG0477	Major facilitator Superfamily
CTY05_01750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTY05_01751	COG4521	taurine ABC transporter
CTY05_01756	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CTY05_01757	COG1733	regulation of RNA biosynthetic process
CTY05_01758	COG3708	Transcriptional regulator
CTY05_01758	COG2207	Transcriptional regulator
CTY05_01761	COG0730	response to heat
CTY05_01763	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CTY05_01763	COG3453	Protein conserved in bacteria
CTY05_01765	COG3781	membrane
CTY05_01766	COG1063	alcohol dehydrogenase
CTY05_01768	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CTY05_01769	COG0508	dehydrogenase complex catalyzes the overall conversion of
CTY05_01770	COG0022	dehydrogenase e1 component
CTY05_01771	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CTY05_01772	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CTY05_01775	COG3706	GGDEF domain
CTY05_01778	COG0133	tryptophan synthase activity
CTY05_01780	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CTY05_01787	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CTY05_01792	COG2226	methyltransferase
CTY05_01803	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CTY05_01804	COG4773	Receptor
CTY05_01808	COG0730	response to heat
CTY05_01809	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CTY05_01812	COG0406	alpha-ribazole phosphatase activity
CTY05_01813	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CTY05_01816	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTY05_01822	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CTY05_01824	COG4264	IucA IucC family
CTY05_01825	COG4264	IucA IucC family
CTY05_01826	COG2814	Major facilitator Superfamily
CTY05_01829	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CTY05_01832	COG1960	acyl-CoA dehydrogenase activity
CTY05_01833	COG1960	acyl-CoA dehydrogenase activity
CTY05_01834	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CTY05_01835	COG2207	Transcriptional regulator
CTY05_01836	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CTY05_01837	COG0776	regulation of translation
CTY05_01842	COG0822	iron-sulfur transferase activity
CTY05_01843	COG0316	Belongs to the HesB IscA family
CTY05_01849	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CTY05_01853	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CTY05_01854	COG0702	epimerase
CTY05_01861	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CTY05_01863	COG0339	signal peptide processing
CTY05_01868	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CTY05_01872	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CTY05_01873	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CTY05_01879	COG0776	regulation of translation
CTY05_01883	COG0590	tRNA wobble adenosine to inosine editing
CTY05_01892	COG0084	hydrolase, TatD family'
CTY05_01896	COG1663	tetraacyldisaccharide 4'-kinase activity
CTY05_01897	COG1132	(ABC) transporter
CTY05_01899	COG0811	peptide transport
CTY05_01900	COG1475	DNA binding
CTY05_01901	COG1192	Involved in chromosome partitioning
CTY05_01903	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CTY05_01906	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CTY05_01907	COG0191	fructose-bisphosphate aldolase activity
CTY05_01911	COG0424	maF-like protein
CTY05_01912	COG2850	peptidyl-arginine hydroxylation
CTY05_01914	COG0640	Transcriptional regulator
CTY05_01916	COG3619	membrane
CTY05_01917	COG3122	Protein conserved in bacteria
CTY05_01918	COG1132	(ABC) transporter
CTY05_01922	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CTY05_01923	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CTY05_01925	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CTY05_01925	COG0506	proline dehydrogenase activity
CTY05_01925	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CTY05_01926	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
CTY05_01929	COG3698	Phosphodiester glycosidase
CTY05_01931	COG2353	YceI-like domain
CTY05_01933	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CTY05_01942	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CTY05_01942	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CTY05_01947	COG3539	Fimbrial protein
CTY05_01948	COG3121	Chaperone
CTY05_01953	COG0697	spore germination
CTY05_01955	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CTY05_01957	COG0583	DNA-binding transcription factor activity
CTY05_01962	COG1309	transcriptional regulator
CTY05_01965	COG1522	sequence-specific DNA binding
CTY05_01967	COG1126	abc transporter atp-binding protein
CTY05_01968	COG0765	amino acid transport
CTY05_01969	COG0765	amino acid transport
CTY05_01975	COG1464	Belongs to the NlpA lipoprotein family
CTY05_01977	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CTY05_01978	COG2011	ABC-type metal ion transport system permease component
CTY05_01979	COG0012	GTP binding
CTY05_01984	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
CTY05_01992	COG0386	Belongs to the glutathione peroxidase family
CTY05_01994	COG0436	Aminotransferase
CTY05_01995	COG1301	dicarboxylic acid transport
CTY05_02002	COG3634	alkyl hydroperoxide reductase activity
CTY05_02005	COG0583	DNA-binding transcription factor activity
CTY05_02006	COG0798	PFAM Bile acid sodium symporter
CTY05_02007	COG0640	Transcriptional regulator
CTY05_02010	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CTY05_02012	COG0583	DNA-binding transcription factor activity
CTY05_02014	COG1953	Uracil, thiamine, allantoin
CTY05_02016	COG2175	clavaminate synthase activity
CTY05_02017	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTY05_02018	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CTY05_02019	COG4521	taurine ABC transporter
CTY05_02021	COG0477	Major facilitator Superfamily
CTY05_02025	COG1271	oxidase subunit
CTY05_02026	COG1294	oxidase, subunit
CTY05_02028	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTY05_02032	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CTY05_02036	COG3052	prosthetic group binding
CTY05_02037	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
CTY05_02039	COG2814	Major facilitator Superfamily
CTY05_02042	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTY05_02043	COG1346	cytolysis
CTY05_02045	COG0583	DNA-binding transcription factor activity
CTY05_02046	COG0625	glutathione transferase activity
CTY05_02047	COG0625	glutathione transferase activity
CTY05_02048	COG0583	DNA-binding transcription factor activity
CTY05_02051	COG1045	serine acetyltransferase
CTY05_02052	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CTY05_02053	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CTY05_02054	COG1280	lysine exporter protein (LysE YggA)
CTY05_02056	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTY05_02057	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTY05_02058	COG1126	abc transporter atp-binding protein
CTY05_02059	COG0765	amino acid transport
CTY05_02060	COG0765	amino acid transport
CTY05_02063	COG2205	protein histidine kinase activity
CTY05_02063	COG0784	Response regulator, receiver
CTY05_02071	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_02082	COG0583	DNA-binding transcription factor activity
CTY05_02086	COG0318	PFAM AMP-dependent synthetase and ligase
CTY05_02087	COG1309	transcriptional regulator
CTY05_02088	COG1960	acyl-CoA dehydrogenase activity
CTY05_02089	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CTY05_02090	COG1024	Enoyl-CoA hydratase
CTY05_02093	COG0583	DNA-binding transcription factor activity
CTY05_02096	COG1960	acyl-CoA dehydrogenase activity
CTY05_02098	COG2814	Major facilitator Superfamily
CTY05_02100	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CTY05_02101	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CTY05_02102	COG2814	Major facilitator Superfamily
CTY05_02103	COG1960	acyl-CoA dehydrogenase activity
CTY05_02104	COG1024	Enoyl-CoA hydratase
CTY05_02105	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_02106	COG1250	3-hydroxyacyl-CoA dehydrogenase
CTY05_02107	COG0183	Belongs to the thiolase family
CTY05_02109	COG2814	Major facilitator Superfamily
CTY05_02111	COG1024	Enoyl-CoA hydratase
CTY05_02113	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CTY05_02114	COG1960	acyl-CoA dehydrogenase activity
CTY05_02115	COG2814	Major facilitator Superfamily
CTY05_02116	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CTY05_02117	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CTY05_02120	COG3842	ATPase activity
CTY05_02121	COG1840	ABC-type Fe3 transport system, periplasmic component
CTY05_02123	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTY05_02124	COG1414	Transcriptional regulator
CTY05_02126	COG0583	DNA-binding transcription factor activity
CTY05_02127	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CTY05_02128	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02130	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CTY05_02131	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02132	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CTY05_02133	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTY05_02134	COG2267	carboxylic ester hydrolase activity
CTY05_02138	COG3038	cytochrome b561
CTY05_02139	COG0753	catalase activity
CTY05_02140	COG2271	Major facilitator Superfamily
CTY05_02141	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CTY05_02142	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CTY05_02148	COG1278	Cold shock
CTY05_02154	COG0210	DNA helicase
CTY05_02155	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CTY05_02156	COG2050	protein possibly involved in aromatic compounds catabolism
CTY05_02158	COG3327	negative regulation of DNA-templated transcription, initiation
CTY05_02159	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
CTY05_02160	COG0183	Belongs to the thiolase family
CTY05_02161	COG1250	3-hydroxyacyl-CoA dehydrogenase
CTY05_02162	COG1024	Enoyl-CoA hydratase
CTY05_02163	COG1024	Enoyl-CoA hydratase
CTY05_02164	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTY05_02165	COG2151	metal-sulfur cluster biosynthetic enzyme
CTY05_02166	COG3396	Phenylacetate-CoA oxygenase
CTY05_02167	COG3460	Phenylacetate-CoA oxygenase
CTY05_02168	COG3396	Phenylacetate-CoA oxygenase
CTY05_02169	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02169	COG2030	dehydratase
CTY05_02170	COG1760	l-serine dehydratase
CTY05_02171	COG0531	amino acid
CTY05_02172	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02177	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CTY05_02181	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CTY05_02184	COG0789	Transcriptional regulator
CTY05_02186	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CTY05_02189	COG2807	transmembrane transport
CTY05_02190	COG0590	tRNA wobble adenosine to inosine editing
CTY05_02192	COG0583	DNA-binding transcription factor activity
CTY05_02200	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CTY05_02200	COG2885	chlorophyll binding
CTY05_02213	COG1116	anion transmembrane transporter activity
CTY05_02214	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CTY05_02216	COG0864	Transcriptional regulator
CTY05_02218	COG1733	regulation of RNA biosynthetic process
CTY05_02219	COG2249	NAD(P)H dehydrogenase (quinone) activity
CTY05_02220	COG0439	Biotin carboxylase
CTY05_02223	COG1063	alcohol dehydrogenase
CTY05_02225	COG1309	transcriptional regulator
CTY05_02230	COG0038	chloride channel
CTY05_02231	COG4770	biotin carboxylase activity
CTY05_02235	COG1914	H( )-stimulated, divalent metal cation uptake system
CTY05_02236	COG0583	DNA-binding transcription factor activity
CTY05_02240	COG3209	COG3209 Rhs family protein
CTY05_02243	COG3209	COG3209 Rhs family protein
CTY05_02244	COG3501	Rhs element vgr protein
CTY05_02248	COG1250	3-hydroxyacyl-CoA dehydrogenase
CTY05_02252	COG2814	Major facilitator Superfamily
CTY05_02254	COG1560	Kdo2-lipid A biosynthetic process
CTY05_02257	COG5006	permease, DMT superfamily
CTY05_02258	COG1522	sequence-specific DNA binding
CTY05_02261	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CTY05_02269	COG1538	Outer membrane efflux protein
CTY05_02270	COG1137	ATPase activity
CTY05_02271	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CTY05_02273	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CTY05_02286	COG5434	Belongs to the glycosyl hydrolase 28 family
CTY05_02290	COG3566	protein conserved in bacteria
CTY05_02294	COG3567	Phage-associated protein, HI1409 family
CTY05_02295	COG5410	chromosome segregation
CTY05_02307	COG1733	regulation of RNA biosynthetic process
CTY05_02308	COG2814	Major facilitator Superfamily
CTY05_02315	COG1278	Cold shock
CTY05_02316	COG1280	lysine exporter protein (LysE YggA)
CTY05_02322	COG1570	exodeoxyribonuclease VII activity
CTY05_02332	COG0583	DNA-binding transcription factor activity
CTY05_02333	COG4638	Rieske (2fe-2S)
CTY05_02334	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
CTY05_02335	COG0633	Ferredoxin
CTY05_02335	COG0543	2 iron, 2 sulfur cluster binding
CTY05_02336	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_02337	COG3135	benzoate transporter
CTY05_02338	COG2814	Major facilitator Superfamily
CTY05_02341	COG1643	Atp-dependent helicase
CTY05_02342	COG0450	alkyl hydroperoxide reductase
CTY05_02344	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CTY05_02346	COG3634	alkyl hydroperoxide reductase activity
CTY05_02350	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CTY05_02351	COG0625	glutathione transferase activity
CTY05_02353	COG2885	chlorophyll binding
CTY05_02363	COG1765	OsmC-like protein
CTY05_02365	COG0667	Aldo Keto reductase
CTY05_02368	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CTY05_02370	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CTY05_02374	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CTY05_02376	COG3038	cytochrome b561
CTY05_02377	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CTY05_02378	COG2252	PERMEase
CTY05_02380	COG2072	flavoprotein involved in K transport
CTY05_02383	COG1741	Belongs to the pirin family
CTY05_02384	COG1309	transcriptional regulator
CTY05_02386	COG0300	oxidoreductase activity
CTY05_02387	COG2072	flavoprotein involved in K transport
CTY05_02388	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
CTY05_02397	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CTY05_02400	COG2814	Major facilitator Superfamily
CTY05_02401	COG1024	Enoyl-CoA hydratase
CTY05_02402	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02404	COG1960	acyl-CoA dehydrogenase activity
CTY05_02409	COG2186	Transcriptional regulator
CTY05_02410	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02412	COG4948	Mandelate Racemase Muconate Lactonizing
CTY05_02413	COG2271	Major facilitator Superfamily
CTY05_02414	COG2721	sulfolactate sulfo-lyase activity
CTY05_02415	COG0697	spore germination
CTY05_02421	COG1113	amino acid transport
CTY05_02425	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02429	COG0531	amino acid
CTY05_02431	COG1113	amino acid transport
CTY05_02439	COG3209	COG3209 Rhs family protein
CTY05_02440	COG3501	Rhs element vgr protein
CTY05_02445	COG1902	pentaerythritol trinitrate reductase activity
CTY05_02445	COG0446	pyridine nucleotide-disulphide oxidoreductase
CTY05_02447	COG2203	Gaf domain
CTY05_02447	COG3706	GGDEF domain
CTY05_02447	COG5001	Diguanylate cyclase
CTY05_02447	COG4251	negative regulation of phosphorylation
CTY05_02449	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CTY05_02459	COG4172	Belongs to the ABC transporter superfamily
CTY05_02460	COG4239	(ABC) transporter, permease
CTY05_02461	COG4174	ABC transporter (Permease)
CTY05_02463	COG1388	LysM domain
CTY05_02463	COG0741	lytic transglycosylase activity
CTY05_02463	COG0741	lytic transglycosylase activity
CTY05_02463	COG1388	LysM domain
CTY05_02464	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CTY05_02472	COG0583	DNA-binding transcription factor activity
CTY05_02473	COG1279	arginine transmembrane transporter activity
CTY05_02477	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTY05_02478	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTY05_02479	COG0006	proline dipeptidase activity
CTY05_02485	COG1278	Cold shock
CTY05_02500	COG0739	heme binding
CTY05_02541	COG0464	growth
CTY05_02556	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CTY05_02561	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CTY05_02562	COG2878	Part of a membrane complex involved in electron transport
CTY05_02563	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CTY05_02567	COG0768	penicillin binding
CTY05_02568	COG0742	ribosomal rna small subunit methyltransferase
CTY05_02571	COG0830	nickel cation binding
CTY05_02573	COG0804	urea catabolic process
CTY05_02581	COG1253	flavin adenine dinucleotide binding
CTY05_02582	COG2851	Citrate transporter
CTY05_02592	COG1773	rubredoxin
CTY05_02593	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CTY05_02595	COG0583	DNA-binding transcription factor activity
CTY05_02600	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CTY05_02601	COG4181	ATPase activity
CTY05_02610	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CTY05_02614	COG0306	phosphate transporter
CTY05_02616	COG3958	Transketolase
CTY05_02617	COG3959	Transketolase, thiamine diphosphate binding domain
CTY05_02618	COG2271	Major facilitator Superfamily
CTY05_02619	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_02620	COG0583	DNA-binding transcription factor activity
CTY05_02623	COG2223	nitrite transmembrane transporter activity
CTY05_02624	COG2207	Transcriptional regulator
CTY05_02625	COG2066	Belongs to the glutaminase family
CTY05_02626	COG0242	peptide deformylase activity
CTY05_02628	COG0477	Major facilitator Superfamily
CTY05_02630	COG0028	Belongs to the TPP enzyme family
CTY05_02633	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_02634	COG2267	carboxylic ester hydrolase activity
CTY05_02636	COG2271	Major facilitator Superfamily
CTY05_02637	COG0446	pyridine nucleotide-disulphide oxidoreductase
CTY05_02639	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_02643	COG1414	Transcriptional regulator
CTY05_02646	COG1024	Enoyl-CoA hydratase
CTY05_02648	COG1215	transferase activity, transferring glycosyl groups
CTY05_02649	COG0726	polysaccharide deacetylase
CTY05_02649	COG1649	PFAM Uncharacterised BCR, COG1649
CTY05_02651	COG4681	YaeQ
CTY05_02653	COG0523	cobalamin synthesis protein
CTY05_02655	COG1607	acyl-coa hydrolase
CTY05_02657	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CTY05_02658	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CTY05_02659	COG1309	transcriptional regulator
CTY05_02664	COG2040	homocysteine
CTY05_02665	COG0531	amino acid
CTY05_02670	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CTY05_02671	COG0477	Major facilitator Superfamily
CTY05_02676	COG0084	hydrolase, TatD family'
CTY05_02682	COG0405	Gamma-glutamyltransferase
CTY05_02683	COG2814	Major facilitator Superfamily
CTY05_02685	COG2050	protein possibly involved in aromatic compounds catabolism
CTY05_02688	COG1090	epimerase
CTY05_02692	COG0420	3'-5' exonuclease activity
CTY05_02697	COG0735	belongs to the Fur family
CTY05_02698	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CTY05_02702	COG0121	glutamine amidotransferase
CTY05_02705	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CTY05_02707	COG0210	DNA helicase
CTY05_02708	COG2885	chlorophyll binding
CTY05_02709	COG0204	Acyl-transferase
CTY05_02712	COG2894	cell division
CTY05_02715	COG1280	lysine exporter protein (LysE YggA)
CTY05_02716	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CTY05_02716	COG1674	ftsk spoiiie
CTY05_02717	COG0492	ferredoxin-NADP+ reductase activity
CTY05_02718	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CTY05_02720	COG0456	acetyltransferase
CTY05_02732	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CTY05_02732	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CTY05_02736	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_02740	COG0473	3-isopropylmalate dehydrogenase activity
CTY05_02741	COG0583	DNA-binding transcription factor activity
CTY05_02744	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CTY05_02749	COG0564	pseudouridine synthase activity
CTY05_02751	COG0358	DNA primase activity
CTY05_02754	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CTY05_02759	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CTY05_02765	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CTY05_02767	COG0351	phosphomethylpyrimidine kinase
CTY05_02767	COG0352	thiamine-phosphate diphosphorylase activity
CTY05_02767	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CTY05_02768	COG1652	LysM domain
CTY05_02773	COG1399	metal-binding, possibly nucleic acid-binding protein
CTY05_02774	COG3101	peptidyl-lysine hydroxylation
CTY05_02775	COG0009	L-threonylcarbamoyladenylate synthase
CTY05_02776	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CTY05_02777	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CTY05_02780	COG4106	trans-aconitate 2-methyltransferase activity
CTY05_02783	COG0596	Alpha beta hydrolase
CTY05_02783	COG2226	methyltransferase
CTY05_02783	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CTY05_02784	COG1877	trehalose-phosphatase activity
CTY05_02785	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CTY05_02786	COG2223	nitrite transmembrane transporter activity
CTY05_02790	COG1196	nuclear chromosome segregation
CTY05_02792	COG0730	response to heat
CTY05_02795	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CTY05_02797	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CTY05_02807	COG0489	protein tyrosine kinase activity
CTY05_02809	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CTY05_02809	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CTY05_02815	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CTY05_02816	COG2081	HI0933 family
CTY05_02818	COG0668	transmembrane transport
CTY05_02822	COG0583	DNA-binding transcription factor activity
CTY05_02827	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CTY05_02828	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CTY05_02834	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CTY05_02841	COG2205	protein histidine kinase activity
CTY05_02842	COG0745	RESPONSE REGULATOR receiver
CTY05_02845	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CTY05_02847	COG0384	phenazine biosynthesis protein PhzF
CTY05_02853	COG1309	transcriptional regulator
CTY05_02854	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CTY05_02855	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CTY05_02857	COG0583	DNA-binding transcription factor activity
CTY05_02861	COG1473	amidohydrolase
CTY05_02863	COG0583	DNA-binding transcription factor activity
CTY05_02866	COG0583	DNA-binding transcription factor activity
CTY05_02867	COG1053	succinate dehydrogenase
CTY05_02869	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CTY05_02870	COG2814	Major facilitator Superfamily
CTY05_02871	COG1960	acyl-CoA dehydrogenase activity
CTY05_02872	COG0583	DNA-binding transcription factor activity
CTY05_02873	COG1063	alcohol dehydrogenase
CTY05_02879	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CTY05_02880	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CTY05_02881	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CTY05_02884	COG3667	copper resistance
CTY05_02885	COG2132	Multicopper oxidase
CTY05_02887	COG0561	phosphatase activity
CTY05_02888	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CTY05_02890	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CTY05_02893	COG1214	PFAM Peptidase M22, glycoprotease
CTY05_02903	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CTY05_02905	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CTY05_02906	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CTY05_02907	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CTY05_02916	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CTY05_02918	COG1846	Transcriptional regulator
CTY05_02919	COG1764	response to oxidative stress
CTY05_02927	COG0037	tRNA processing
CTY05_02929	COG0248	Ppx GppA phosphatase
CTY05_02934	COG0072	phenylalanine-tRNA ligase activity
CTY05_02938	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CTY05_02941	COG1238	metal cluster binding
CTY05_02942	COG0625	glutathione transferase activity
CTY05_02945	COG0318	PFAM AMP-dependent synthetase and ligase
CTY05_02946	COG3028	Belongs to the UPF0307 family
CTY05_02947	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CTY05_02951	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CTY05_02952	COG0617	tRNA 3'-terminal CCA addition
CTY05_02953	COG1555	photosystem II stabilization
CTY05_02954	COG3956	TIGRFAM MazG family protein
CTY05_02956	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CTY05_02960	COG0784	Response regulator, receiver
CTY05_02960	COG2205	protein histidine kinase activity
CTY05_02960	COG5002	protein histidine kinase activity
CTY05_02961	COG1024	Enoyl-CoA hydratase
CTY05_02962	COG2084	Dehydrogenase
CTY05_02963	COG3622	Belongs to the hyi family
CTY05_02966	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CTY05_02967	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CTY05_02968	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CTY05_02969	COG0697	spore germination
CTY05_02971	COG2814	Major facilitator Superfamily
CTY05_02972	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CTY05_02974	COG0583	DNA-binding transcription factor activity
CTY05_02975	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CTY05_02977	COG0084	hydrolase, TatD family'
CTY05_02980	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CTY05_02986	COG0440	acetolactate synthase activity
CTY05_02987	COG0028	Belongs to the TPP enzyme family
CTY05_02992	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CTY05_02993	COG0577	efflux transmembrane transporter activity
CTY05_02993	COG1136	(ABC) transporter
CTY05_02994	COG1538	Outer membrane efflux protein
CTY05_02997	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CTY05_02998	COG1162	GTPase activity
CTY05_03000	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CTY05_03008	COG1426	Protein conserved in bacteria
CTY05_03015	COG0793	Belongs to the peptidase S41A family
CTY05_03018	COG2267	carboxylic ester hydrolase activity
CTY05_03020	COG1012	belongs to the aldehyde dehydrogenase family
CTY05_03021	COG3265	gluconokinase activity
CTY05_03023	COG0800	Aldolase
CTY05_03025	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CTY05_03026	COG0280	phosphate acetyltransferase
CTY05_03026	COG0857	belongs to the CobB CobQ family
CTY05_03027	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CTY05_03027	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CTY05_03031	COG0740	serine-type endopeptidase activity
CTY05_03033	COG4774	siderophore transport
CTY05_03035	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CTY05_03037	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CTY05_03037	COG2813	Specifically methylates the guanine in position
CTY05_03057	COG0788	formyltetrahydrofolate deformylase activity
CTY05_03060	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CTY05_03061	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CTY05_03062	COG4651	solute:proton antiporter activity
CTY05_03062	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CTY05_03066	COG0724	RNA recognition motif
CTY05_03067	COG0210	DNA helicase
CTY05_03072	COG1733	regulation of RNA biosynthetic process
CTY05_03076	COG1280	lysine exporter protein (LysE YggA)
CTY05_03077	COG1560	Kdo2-lipid A biosynthetic process
CTY05_03079	COG1301	dicarboxylic acid transport
CTY05_03090	COG0473	3-isopropylmalate dehydrogenase activity
CTY05_03101	COG0583	DNA-binding transcription factor activity
CTY05_03103	COG0625	glutathione transferase activity
CTY05_03104	COG2378	regulation of single-species biofilm formation
CTY05_03105	COG0546	phosphoglycolate phosphatase activity
CTY05_03107	COG1530	ribonuclease E activity
CTY05_03111	COG0583	DNA-binding transcription factor activity
CTY05_03112	COG4221	oxidoreductase activity
CTY05_03113	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CTY05_03115	COG0534	Mate efflux family protein
CTY05_03118	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CTY05_03125	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CTY05_03126	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CTY05_03129	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CTY05_03131	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CTY05_03131	COG0644	oxidoreductase
CTY05_03133	COG0425	Belongs to the sulfur carrier protein TusA family
CTY05_03134	COG4535	Mg2 and Co2 transporter CorC
CTY05_03136	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CTY05_03140	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CTY05_03141	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CTY05_03141	COG0475	glutathione-regulated potassium exporter activity
CTY05_03144	COG0484	heat shock protein binding
CTY05_03145	COG0789	Transcriptional regulator
CTY05_03146	COG0598	Magnesium transport protein CorA
CTY05_03150	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CTY05_03151	COG1074	ATP-dependent DNA helicase activity
CTY05_03152	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CTY05_03156	COG2226	methyltransferase
CTY05_03159	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CTY05_03161	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CTY05_03164	COG2111	Na H antiporter
CTY05_03164	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CTY05_03165	COG1006	Multisubunit Na H antiporter MnhC subunit
CTY05_03166	COG0651	ATP synthesis coupled electron transport
CTY05_03168	COG2212	antiporter activity
CTY05_03172	COG0195	Participates in both transcription termination and antitermination
CTY05_03182	COG0237	dephospho-CoA kinase activity
CTY05_03184	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CTY05_03187	COG0497	DNA recombination
CTY05_03189	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CTY05_03195	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CTY05_03195	COG2169	Transcriptional regulator
CTY05_03196	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CTY05_03208	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CTY05_03211	COG0326	Molecular chaperone. Has ATPase activity
CTY05_03214	COG2056	Na+-H+ antiporter family
CTY05_03234	COG0546	phosphoglycolate phosphatase activity
CTY05_03235	COG1716	ATPase activity
CTY05_03244	COG0181	hydroxymethylbilane synthase activity
CTY05_03246	COG3275	phosphorelay sensor kinase activity
CTY05_03250	COG1538	Outer membrane efflux protein
CTY05_03251	COG0697	spore germination
CTY05_03256	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CTY05_03257	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CTY05_03258	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CTY05_03259	COG0772	Belongs to the SEDS family
CTY05_03264	COG4974	Belongs to the 'phage' integrase family
CTY05_03265	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CTY05_03267	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CTY05_03269	COG2197	response regulator
CTY05_03272	COG0793	Belongs to the peptidase S41A family
CTY05_03273	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CTY05_03274	COG0795	lipopolysaccharide-transporting ATPase activity
CTY05_03282	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CTY05_03282	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CTY05_03284	COG0004	ammonium transporteR
CTY05_03285	COG0347	Belongs to the P(II) protein family
CTY05_03287	COG0606	chelatase, subunit chli
CTY05_03288	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CTY05_03290	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CTY05_03293	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CTY05_03296	COG0318	PFAM AMP-dependent synthetase and ligase
CTY05_03298	COG0477	Major facilitator Superfamily
CTY05_03299	COG2860	membrane
CTY05_03300	COG3012	SEC-C Motif Domain Protein
CTY05_03301	COG1253	flavin adenine dinucleotide binding
CTY05_03303	COG2814	Major facilitator Superfamily
CTY05_03305	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CTY05_03312	COG0655	NAD(P)H dehydrogenase (quinone) activity
CTY05_03314	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CTY05_03318	COG1309	transcriptional regulator
CTY05_03325	COG0758	DNA mediated transformation
CTY05_03327	COG0697	spore germination
CTY05_03328	COG1309	transcriptional regulator
CTY05_03331	COG0386	Belongs to the glutathione peroxidase family
CTY05_03344	COG1121	(ABC) transporter
CTY05_03345	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CTY05_03346	COG1280	lysine exporter protein (LysE YggA)
CTY05_03347	COG2837	iron assimilation
CTY05_03348	COG0281	malic enzyme
CTY05_03357	COG0519	Catalyzes the synthesis of GMP from XMP
CTY05_03357	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CTY05_03358	COG4399	Belongs to the UPF0754 family
CTY05_03359	COG2259	Doxx family
CTY05_03360	COG0586	Pfam SNARE associated Golgi protein
CTY05_03363	COG1192	Involved in chromosome partitioning
CTY05_03365	COG0271	Belongs to the BolA IbaG family
CTY05_03369	COG2267	carboxylic ester hydrolase activity
CTY05_03373	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
CTY05_03373	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CTY05_03373	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CTY05_03373	COG3321	synthase
CTY05_03374	COG1960	acyl-CoA dehydrogenase activity
CTY05_03376	COG2197	response regulator
CTY05_03378	COG3916	Acyl-homoserine-lactone synthase
CTY05_03379	COG0477	Major facilitator Superfamily
CTY05_03380	COG1024	Enoyl-CoA hydratase
CTY05_03381	COG1024	Enoyl-CoA hydratase
CTY05_03382	COG1960	acyl-CoA dehydrogenase activity
CTY05_03383	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CTY05_03387	COG1113	amino acid transport
CTY05_03388	COG1113	amino acid transport
CTY05_03389	COG0251	oxidation-reduction process
CTY05_03392	COG1522	sequence-specific DNA binding
CTY05_03397	COG0564	pseudouridine synthase activity
CTY05_03401	COG1051	belongs to the nudix hydrolase family
CTY05_03405	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CTY05_03408	COG1802	Transcriptional regulator
CTY05_03409	COG1448	Aminotransferase
CTY05_03410	COG0277	FAD linked oxidase domain protein
CTY05_03412	COG2186	Transcriptional regulator
CTY05_03414	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CTY05_03417	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CTY05_03419	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CTY05_03421	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CTY05_03422	COG0438	transferase activity, transferring glycosyl groups
CTY05_03425	COG0438	transferase activity, transferring glycosyl groups
CTY05_03428	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CTY05_03434	COG0728	peptidoglycan biosynthetic process
CTY05_03435	COG3023	N-Acetylmuramoyl-L-alanine amidase
CTY05_03446	COG0546	phosphoglycolate phosphatase activity
CTY05_03447	COG1028	Short-chain dehydrogenase reductase Sdr
CTY05_03451	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CTY05_03452	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CTY05_03453	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CTY05_03454	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CTY05_03455	COG1116	anion transmembrane transporter activity
CTY05_03456	COG1309	transcriptional regulator
CTY05_03457	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CTY05_03459	COG0196	riboflavin kinase activity
CTY05_03460	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CTY05_03462	COG1047	Peptidyl-prolyl cis-trans
CTY05_03467	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CTY05_03472	COG0583	DNA-binding transcription factor activity
CTY05_03478	COG2951	lytic endotransglycosylase activity
CTY05_03480	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CTY05_03483	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CTY05_03485	COG0671	phosphoesterase, PA-phosphatase related
CTY05_03486	COG0861	Integral membrane protein TerC family
CTY05_03488	COG0754	glutathionylspermidine amidase activity
CTY05_03490	COG0402	S-adenosylhomocysteine deaminase activity
CTY05_03494	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CTY05_03495	COG1230	cation diffusion facilitator family transporter
CTY05_03498	COG0706	membrane insertase activity
CTY05_03501	COG0230	Belongs to the bacterial ribosomal protein bL34 family