locus-tag class description ABBFA_00001 PF11638 DnaA N-terminal domain ABBFA_00001 PF08299 Bacterial dnaA protein helix-turn-helix ABBFA_00001 PF00308 Bacterial dnaA protein ABBFA_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain ABBFA_00002 PF02767 DNA polymerase III beta subunit, central domain ABBFA_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain ABBFA_00003 PF02463 RecF/RecN/SMC N terminal domain ABBFA_00004 PF01751 Toprim domain ABBFA_00004 PF18053 DNA gyrase B subunit insert domain ABBFA_00004 PF00204 DNA gyrase B ABBFA_00004 PF00986 DNA gyrase B subunit, carboxyl terminus ABBFA_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00006 PF09335 SNARE associated Golgi protein ABBFA_00007 PF00005 ABC transporter ABBFA_00007 PF12848 ABC transporter ABBFA_00011 PF01521 Iron-sulphur cluster biosynthesis ABBFA_00012 PF00561 alpha/beta hydrolase fold ABBFA_00013 PF03702 Anhydro-N-acetylmuramic acid kinase ABBFA_00014 PF00579 tRNA synthetases class I (W and Y) ABBFA_00019 PF00209 Sodium:neurotransmitter symporter family ABBFA_00021 PF01029 NusB family ABBFA_00021 PF01189 16S rRNA methyltransferase RsmB/F ABBFA_00022 PF00551 Formyl transferase ABBFA_00022 PF02911 Formyl transferase, C-terminal domain ABBFA_00023 PF00920 Dehydratase family ABBFA_00026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00026 PF03466 LysR substrate binding domain ABBFA_00027 PF00860 Permease family ABBFA_00028 PF00311 Phosphoenolpyruvate carboxylase ABBFA_00029 PF00440 Bacterial regulatory proteins, tetR family ABBFA_00029 PF08361 MAATS-type transcriptional repressor, C-terminal region ABBFA_00030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_00031 PF00873 AcrB/AcrD/AcrF family ABBFA_00033 PF00226 DnaJ domain ABBFA_00033 PF01556 DnaJ C terminal domain ABBFA_00033 PF00684 DnaJ central domain ABBFA_00035 PF05173 Dihydrodipicolinate reductase, C-terminus ABBFA_00035 PF01113 Dihydrodipicolinate reductase, N-terminus ABBFA_00037 PF07690 Major Facilitator Superfamily ABBFA_00038 PF00248 Aldo/keto reductase family ABBFA_00039 PF03466 LysR substrate binding domain ABBFA_00039 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00041 PF00155 Aminotransferase class I and II ABBFA_00041 PF00392 Bacterial regulatory proteins, gntR family ABBFA_00042 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_00042 PF00107 Zinc-binding dehydrogenase ABBFA_00043 PF03352 Methyladenine glycosylase ABBFA_00046 PF10576 Iron-sulfur binding domain of endonuclease III ABBFA_00046 PF00633 Helix-hairpin-helix motif ABBFA_00046 PF00730 HhH-GPD superfamily base excision DNA repair protein ABBFA_00046 PF14815 NUDIX domain ABBFA_00049 PF07043 Protein of unknown function (DUF1328) ABBFA_00050 PF03692 Putative zinc- or iron-chelating domain ABBFA_00051 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_00052 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_00052 PF12002 MgsA AAA+ ATPase C terminal ABBFA_00052 PF16193 AAA C-terminal domain ABBFA_00053 PF01226 Formate/nitrite transporter ABBFA_00055 PF01259 SAICAR synthetase ABBFA_00057 PF00701 Dihydrodipicolinate synthetase family ABBFA_00058 PF00857 Isochorismatase family ABBFA_00059 PF01758 Sodium Bile acid symporter family ABBFA_00060 PF01554 MatE ABBFA_00061 PF04463 Protein of unknown function (DUF523) ABBFA_00062 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_00064 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_00065 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_00065 PF14497 Glutathione S-transferase, C-terminal domain ABBFA_00067 PF00324 Amino acid permease ABBFA_00069 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABBFA_00069 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABBFA_00071 PF07702 UTRA domain ABBFA_00071 PF00392 Bacterial regulatory proteins, gntR family ABBFA_00072 PF05962 HutD ABBFA_00073 PF17391 Urocanase N-terminal domain ABBFA_00073 PF17392 Urocanase C-terminal domain ABBFA_00073 PF01175 Urocanase Rossmann-like domain ABBFA_00074 PF00221 Aromatic amino acid lyase ABBFA_00075 PF00324 Amino acid permease ABBFA_00076 PF01979 Amidohydrolase family ABBFA_00077 PF00491 Arginase family ABBFA_00080 PF01177 Asp/Glu/Hydantoin racemase ABBFA_00082 PF00145 C-5 cytosine-specific DNA methylase ABBFA_00083 PF08676 MutL C terminal dimerisation domain ABBFA_00083 PF01119 DNA mismatch repair protein, C-terminal domain ABBFA_00085 PF01380 SIS domain ABBFA_00086 PF12804 MobA-like NTP transferase domain ABBFA_00086 PF14602 Hexapeptide repeat of succinyl-transferase ABBFA_00086 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_00087 PF04608 Phosphatidylglycerophosphatase A ABBFA_00088 PF00586 AIR synthase related protein, N-terminal domain ABBFA_00088 PF02769 AIR synthase related protein, C-terminal domain ABBFA_00089 PF01029 NusB family ABBFA_00090 PF00885 6,7-dimethyl-8-ribityllumazine synthase ABBFA_00091 PF00925 GTP cyclohydrolase II ABBFA_00091 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABBFA_00096 PF02580 D-Tyr-tRNA(Tyr) deacylase ABBFA_00097 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ABBFA_00097 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABBFA_00098 PF00581 Rhodanese-like domain ABBFA_00099 PF02666 Phosphatidylserine decarboxylase ABBFA_00101 PF11808 Phosphate regulon sensor protein PhoR ABBFA_00101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00101 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_00101 PF00989 PAS fold ABBFA_00102 PF00486 Transcriptional regulatory protein, C terminal ABBFA_00102 PF00072 Response regulator receiver domain ABBFA_00104 PF00106 short chain dehydrogenase ABBFA_00105 PF01554 MatE ABBFA_00106 PF00155 Aminotransferase class I and II ABBFA_00107 PF04286 Protein of unknown function (DUF445) ABBFA_00110 PF04262 Glutamate-cysteine ligase ABBFA_00111 PF02600 Disulfide bond formation protein DsbB ABBFA_00112 PF04717 Type VI secretion system, phage-baseplate injector ABBFA_00113 PF01471 Putative peptidoglycan binding domain ABBFA_00113 PF01510 N-acetylmuramoyl-L-alanine amidase ABBFA_00113 PF01476 LysM domain ABBFA_00119 PF05728 Uncharacterised protein family (UPF0227) ABBFA_00120 PF00986 DNA gyrase B subunit, carboxyl terminus ABBFA_00120 PF01751 Toprim domain ABBFA_00120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00120 PF00204 DNA gyrase B ABBFA_00121 PF04115 Ureidoglycolate lyase ABBFA_00122 PF03561 Allantoicase repeat ABBFA_00123 PF01494 FAD binding domain ABBFA_00125 PF00860 Permease family ABBFA_00126 PF00576 HIUase/Transthyretin family ABBFA_00132 PF11412 Disulphide bond corrector protein DsbC ABBFA_00132 PF02683 Cytochrome C biogenesis protein transmembrane region ABBFA_00133 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_00133 PF07694 5TMR of 5TMR-LYT ABBFA_00134 PF07859 alpha/beta hydrolase fold ABBFA_00136 PF03960 ArsC family ABBFA_00137 PF03372 Endonuclease/Exonuclease/phosphatase family ABBFA_00138 PF00156 Phosphoribosyl transferase domain ABBFA_00139 PF07715 TonB-dependent Receptor Plug Domain ABBFA_00139 PF00593 TonB dependent receptor ABBFA_00141 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ABBFA_00141 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ABBFA_00142 PF03033 Glycosyltransferase family 28 N-terminal domain ABBFA_00142 PF04101 Glycosyltransferase family 28 C-terminal domain ABBFA_00143 PF08245 Mur ligase middle domain ABBFA_00143 PF02875 Mur ligase family, glutamate ligase domain ABBFA_00143 PF01225 Mur ligase family, catalytic domain ABBFA_00144 PF07478 D-ala D-ala ligase C-terminus ABBFA_00144 PF01820 D-ala D-ala ligase N-terminus ABBFA_00145 PF08478 POTRA domain, FtsQ-type ABBFA_00145 PF03799 Cell division protein FtsQ ABBFA_00146 PF02491 SHS2 domain inserted in FTSA ABBFA_00147 PF00091 Tubulin/FtsZ family, GTPase domain ABBFA_00147 PF12327 FtsZ family, C-terminal domain ABBFA_00148 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ABBFA_00150 PF01551 Peptidase family M23 ABBFA_00151 PF00456 Transketolase, thiamine diphosphate binding domain ABBFA_00151 PF17831 Pyruvate dehydrogenase E1 component middle domain ABBFA_00152 PF02817 e3 binding domain ABBFA_00152 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABBFA_00152 PF00364 Biotin-requiring enzyme ABBFA_00154 PF01169 Uncharacterized protein family UPF0016 ABBFA_00155 PF00593 TonB dependent receptor ABBFA_00155 PF07715 TonB-dependent Receptor Plug Domain ABBFA_00156 PF01613 Flavin reductase like domain ABBFA_00156 PF00258 Flavodoxin ABBFA_00157 PF03692 Putative zinc- or iron-chelating domain ABBFA_00158 PF00571 CBS domain ABBFA_00158 PF00478 IMP dehydrogenase / GMP reductase domain ABBFA_00159 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABBFA_00159 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABBFA_00159 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABBFA_00159 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABBFA_00160 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ABBFA_00160 PF01243 Pyridoxamine 5'-phosphate oxidase ABBFA_00161 PF02272 DHHA1 domain ABBFA_00161 PF17768 RecJ OB domain ABBFA_00161 PF01368 DHH family ABBFA_00163 PF00472 RF-1 domain ABBFA_00163 PF03462 PCRF domain ABBFA_00166 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_00167 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ABBFA_00168 PF04452 RNA methyltransferase ABBFA_00169 PF00924 Mechanosensitive ion channel ABBFA_00171 PF13193 AMP-binding enzyme C-terminal domain ABBFA_00171 PF16177 Acetyl-coenzyme A synthetase N-terminus ABBFA_00171 PF00501 AMP-binding enzyme ABBFA_00172 PF00857 Isochorismatase family ABBFA_00173 PF01037 Lrp/AsnC ligand binding domain ABBFA_00174 PF00296 Luciferase-like monooxygenase ABBFA_00175 PF03358 NADPH-dependent FMN reductase ABBFA_00176 PF00072 Response regulator receiver domain ABBFA_00176 PF00196 Bacterial regulatory proteins, luxR family ABBFA_00178 PF00072 Response regulator receiver domain ABBFA_00178 PF01627 Hpt domain ABBFA_00178 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_00178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00178 PF00672 HAMP domain ABBFA_00179 PF04341 Protein of unknown function, DUF485 ABBFA_00180 PF00474 Sodium:solute symporter family ABBFA_00182 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_00184 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_00184 PF17158 Membrane-associated sensor, integral membrane domain ABBFA_00185 PF17755 UvrA DNA-binding domain ABBFA_00185 PF17760 UvrA interaction domain ABBFA_00185 PF00005 ABC transporter ABBFA_00186 PF00440 Bacterial regulatory proteins, tetR family ABBFA_00186 PF16925 Tetracyclin repressor-like, C-terminal domain ABBFA_00187 PF00107 Zinc-binding dehydrogenase ABBFA_00187 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_00189 PF06942 GlpM protein ABBFA_00190 PF02581 Thiamine monophosphate synthase ABBFA_00190 PF03070 TENA/THI-4/PQQC family ABBFA_00190 PF08543 Phosphomethylpyrimidine kinase ABBFA_00192 PF07690 Major Facilitator Superfamily ABBFA_00193 PF00436 Single-strand binding protein family ABBFA_00195 PF03591 AzlC protein ABBFA_00197 PF00324 Amino acid permease ABBFA_00198 PF00155 Aminotransferase class I and II ABBFA_00198 PF00392 Bacterial regulatory proteins, gntR family ABBFA_00199 PF00202 Aminotransferase class-III ABBFA_00200 PF00171 Aldehyde dehydrogenase family ABBFA_00201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00202 PF00857 Isochorismatase family ABBFA_00203 PF05726 Pirin C-terminal cupin domain ABBFA_00203 PF02678 Pirin ABBFA_00204 PF01593 Flavin containing amine oxidoreductase ABBFA_00208 PF01555 DNA methylase ABBFA_00209 PF09516 CfrBI restriction endonuclease ABBFA_00214 PF07728 AAA domain (dynein-related subfamily) ABBFA_00214 PF12102 Domain of unknown function (DUF3578) ABBFA_00221 PF12146 Serine aminopeptidase, S33 ABBFA_00222 PF03466 LysR substrate binding domain ABBFA_00222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00223 PF13533 Biotin-lipoyl like ABBFA_00225 PF17932 Tetracyclin repressor-like, C-terminal domain ABBFA_00225 PF00440 Bacterial regulatory proteins, tetR family ABBFA_00240 PF01037 Lrp/AsnC ligand binding domain ABBFA_00244 PF07690 Major Facilitator Superfamily ABBFA_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00245 PF03466 LysR substrate binding domain ABBFA_00249 PF00248 Aldo/keto reductase family ABBFA_00250 PF02311 AraC-like ligand binding domain ABBFA_00250 PF12833 Helix-turn-helix domain ABBFA_00253 PF01638 HxlR-like helix-turn-helix ABBFA_00256 PF01638 HxlR-like helix-turn-helix ABBFA_00257 PF02525 Flavodoxin-like fold ABBFA_00259 PF13302 Acetyltransferase (GNAT) domain ABBFA_00261 PF02705 K+ potassium transporter ABBFA_00266 PF00230 Major intrinsic protein ABBFA_00269 PF00977 Histidine biosynthesis protein ABBFA_00270 PF01636 Phosphotransferase enzyme family ABBFA_00275 PF00977 Histidine biosynthesis protein ABBFA_00278 PF00117 Glutamine amidotransferase class-I ABBFA_00279 PF00475 Imidazoleglycerol-phosphate dehydratase ABBFA_00283 PF00583 Acetyltransferase (GNAT) family ABBFA_00284 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ABBFA_00284 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ABBFA_00285 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_00285 PF00672 HAMP domain ABBFA_00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00286 PF00486 Transcriptional regulatory protein, C terminal ABBFA_00286 PF00072 Response regulator receiver domain ABBFA_00287 PF09371 Tex-like protein N-terminal domain ABBFA_00287 PF16921 Tex protein YqgF-like domain ABBFA_00287 PF17674 HHH domain ABBFA_00287 PF00575 S1 RNA binding domain ABBFA_00288 PF00916 Sulfate permease family ABBFA_00288 PF01740 STAS domain ABBFA_00289 PF00106 short chain dehydrogenase ABBFA_00290 PF01053 Cys/Met metabolism PLP-dependent enzyme ABBFA_00291 PF12848 ABC transporter ABBFA_00291 PF00005 ABC transporter ABBFA_00296 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_00296 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_00297 PF00873 AcrB/AcrD/AcrF family ABBFA_00298 PF01545 Cation efflux family ABBFA_00304 PF00324 Amino acid permease ABBFA_00307 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABBFA_00310 PF01795 MraW methylase family ABBFA_00312 PF03717 Penicillin-binding Protein dimerisation domain ABBFA_00312 PF00905 Penicillin binding protein transpeptidase domain ABBFA_00313 PF01225 Mur ligase family, catalytic domain ABBFA_00313 PF02875 Mur ligase family, glutamate ligase domain ABBFA_00313 PF08245 Mur ligase middle domain ABBFA_00314 PF08245 Mur ligase middle domain ABBFA_00314 PF01225 Mur ligase family, catalytic domain ABBFA_00314 PF02875 Mur ligase family, glutamate ligase domain ABBFA_00315 PF00953 Glycosyl transferase family 4 ABBFA_00317 PF13847 Methyltransferase domain ABBFA_00318 PF00905 Penicillin binding protein transpeptidase domain ABBFA_00318 PF00912 Transglycosylase ABBFA_00318 PF17092 Penicillin-binding protein OB-like domain ABBFA_00323 PF11741 AMIN domain ABBFA_00323 PF07660 Secretin and TonB N terminus short domain ABBFA_00323 PF03958 Bacterial type II/III secretion system short domain ABBFA_00323 PF00263 Bacterial type II and III secretion system protein ABBFA_00324 PF01202 Shikimate kinase ABBFA_00325 PF01761 3-dehydroquinate synthase ABBFA_00327 PF01645 Conserved region in glutamate synthase ABBFA_00327 PF00310 Glutamine amidotransferases class-II ABBFA_00327 PF04898 Glutamate synthase central domain ABBFA_00327 PF01493 GXGXG motif ABBFA_00328 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ABBFA_00328 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_00330 PF04011 LemA family ABBFA_00331 PF04536 TPM domain ABBFA_00333 PF07963 Prokaryotic N-terminal methylation motif ABBFA_00333 PF00114 Pilin (bacterial filament) ABBFA_00334 PF15864 Protein glycosylation ligase ABBFA_00334 PF04932 O-Antigen ligase ABBFA_00334 PF11846 Virulence factor membrane-bound polymerase, C-terminal ABBFA_00335 PF00210 Ferritin-like domain ABBFA_00336 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_00337 PF01042 Endoribonuclease L-PSP ABBFA_00338 PF02824 TGS domain ABBFA_00338 PF04607 Region found in RelA / SpoT proteins ABBFA_00338 PF13291 ACT domain ABBFA_00339 PF01192 RNA polymerase Rpb6 ABBFA_00340 PF00625 Guanylate kinase ABBFA_00341 PF02401 LytB protein ABBFA_00349 PF00886 Ribosomal protein S16 ABBFA_00350 PF01782 RimM N-terminal domain ABBFA_00350 PF05239 PRC-barrel domain ABBFA_00351 PF01746 tRNA (Guanine-1)-methyltransferase ABBFA_00352 PF01245 Ribosomal protein L19 ABBFA_00353 PF00561 alpha/beta hydrolase fold ABBFA_00354 PF03280 Proteobacterial lipase chaperone protein ABBFA_00355 PF01509 TruB family pseudouridylate synthase (N terminal domain) ABBFA_00355 PF16198 tRNA pseudouridylate synthase B C-terminal domain ABBFA_00355 PF09157 Pseudouridine synthase II TruB, C-terminal ABBFA_00356 PF01925 Sulfite exporter TauE/SafE ABBFA_00358 PF00892 EamA-like transporter family ABBFA_00359 PF00892 EamA-like transporter family ABBFA_00360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABBFA_00360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABBFA_00361 PF01565 FAD binding domain ABBFA_00361 PF02913 FAD linked oxidases, C-terminal domain ABBFA_00363 PF03992 Antibiotic biosynthesis monooxygenase ABBFA_00364 PF02525 Flavodoxin-like fold ABBFA_00366 PF07690 Major Facilitator Superfamily ABBFA_00367 PF12805 FUSC-like inner membrane protein yccS ABBFA_00368 PF00080 Copper/zinc superoxide dismutase (SODC) ABBFA_00369 PF01594 AI-2E family transporter ABBFA_00374 PF08241 Methyltransferase domain ABBFA_00376 PF00324 Amino acid permease ABBFA_00377 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABBFA_00377 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABBFA_00378 PF00202 Aminotransferase class-III ABBFA_00379 PF04958 Arginine N-succinyltransferase beta subunit ABBFA_00380 PF00171 Aldehyde dehydrogenase family ABBFA_00381 PF04996 Succinylarginine dihydrolase ABBFA_00382 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family ABBFA_00388 PF03466 LysR substrate binding domain ABBFA_00388 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00389 PF00892 EamA-like transporter family ABBFA_00393 PF02092 Glycyl-tRNA synthetase beta subunit ABBFA_00393 PF05746 DALR anticodon binding domain ABBFA_00394 PF02091 Glycyl-tRNA synthetase alpha subunit ABBFA_00395 PF07690 Major Facilitator Superfamily ABBFA_00398 PF00571 CBS domain ABBFA_00399 PF04024 PspC domain ABBFA_00401 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_00401 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_00401 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_00401 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_00403 PF01488 Shikimate / quinate 5-dehydrogenase ABBFA_00403 PF08501 Shikimate dehydrogenase substrate binding domain ABBFA_00403 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ABBFA_00404 PF01218 Coproporphyrinogen III oxidase ABBFA_00405 PF00925 GTP cyclohydrolase II ABBFA_00406 PF02780 Transketolase, C-terminal domain ABBFA_00406 PF02779 Transketolase, pyrimidine binding domain ABBFA_00406 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ABBFA_00407 PF00459 Inositol monophosphatase family ABBFA_00408 PF00271 Helicase conserved C-terminal domain ABBFA_00408 PF12343 Cold shock protein DEAD box A ABBFA_00408 PF03880 DbpA RNA binding domain ABBFA_00408 PF00270 DEAD/DEAH box helicase ABBFA_00410 PF00005 ABC transporter ABBFA_00411 PF02405 Permease MlaE ABBFA_00413 PF05494 MlaC protein ABBFA_00415 PF01544 CorA-like Mg2+ transporter protein ABBFA_00416 PF03641 Possible lysine decarboxylase ABBFA_00417 PF00293 NUDIX domain ABBFA_00418 PF00156 Phosphoribosyl transferase domain ABBFA_00419 PF00271 Helicase conserved C-terminal domain ABBFA_00419 PF00270 DEAD/DEAH box helicase ABBFA_00419 PF17191 RecG wedge domain ABBFA_00422 PF01553 Acyltransferase ABBFA_00424 PF00375 Sodium:dicarboxylate symporter family ABBFA_00426 PF01926 50S ribosome-binding GTPase ABBFA_00427 PF02082 Transcriptional regulator ABBFA_00428 PF00970 Oxidoreductase FAD-binding domain ABBFA_00428 PF00042 Globin ABBFA_00428 PF00175 Oxidoreductase NAD-binding domain ABBFA_00429 PF05872 Bacterial protein of unknown function (DUF853) ABBFA_00430 PF01053 Cys/Met metabolism PLP-dependent enzyme ABBFA_00431 PF00117 Glutamine amidotransferase class-I ABBFA_00432 PF00338 Ribosomal protein S10p/S20e ABBFA_00433 PF00297 Ribosomal protein L3 ABBFA_00434 PF00573 Ribosomal protein L4/L1 family ABBFA_00435 PF00276 Ribosomal protein L23 ABBFA_00436 PF03947 Ribosomal Proteins L2, C-terminal domain ABBFA_00436 PF00181 Ribosomal Proteins L2, RNA binding domain ABBFA_00437 PF00203 Ribosomal protein S19 ABBFA_00438 PF00237 Ribosomal protein L22p/L17e ABBFA_00439 PF00189 Ribosomal protein S3, C-terminal domain ABBFA_00439 PF07650 KH domain ABBFA_00440 PF00252 Ribosomal protein L16p/L10e ABBFA_00441 PF00831 Ribosomal L29 protein ABBFA_00442 PF00366 Ribosomal protein S17 ABBFA_00443 PF00238 Ribosomal protein L14p/L23e ABBFA_00444 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ABBFA_00444 PF00467 KOW motif ABBFA_00445 PF00673 ribosomal L5P family C-terminus ABBFA_00445 PF00281 Ribosomal protein L5 ABBFA_00446 PF00253 Ribosomal protein S14p/S29e ABBFA_00447 PF00410 Ribosomal protein S8 ABBFA_00448 PF00347 Ribosomal protein L6 ABBFA_00449 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ABBFA_00450 PF03719 Ribosomal protein S5, C-terminal domain ABBFA_00450 PF00333 Ribosomal protein S5, N-terminal domain ABBFA_00451 PF00327 Ribosomal protein L30p/L7e ABBFA_00452 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ABBFA_00453 PF00344 SecY translocase ABBFA_00454 PF00444 Ribosomal protein L36 ABBFA_00455 PF00416 Ribosomal protein S13/S18 ABBFA_00456 PF00411 Ribosomal protein S11 ABBFA_00457 PF00163 Ribosomal protein S4/S9 N-terminal domain ABBFA_00457 PF01479 S4 domain ABBFA_00458 PF01000 RNA polymerase Rpb3/RpoA insert domain ABBFA_00458 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ABBFA_00458 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ABBFA_00459 PF01196 Ribosomal protein L17 ABBFA_00460 PF00743 Flavin-binding monooxygenase-like ABBFA_00461 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_00461 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_00461 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_00462 PF03937 Flavinator of succinate dehydrogenase ABBFA_00469 PF09526 Probable metal-binding protein (DUF2387) ABBFA_00470 PF01432 Peptidase family M3 ABBFA_00471 PF00575 S1 RNA binding domain ABBFA_00471 PF17876 Cold shock domain ABBFA_00471 PF08206 Ribonuclease B OB domain ABBFA_00471 PF08461 Ribonuclease R winged-helix domain ABBFA_00471 PF00773 RNB domain ABBFA_00480 PF01557 Fumarylacetoacetate (FAA) hydrolase family ABBFA_00481 PF12833 Helix-turn-helix domain ABBFA_00482 PF00892 EamA-like transporter family ABBFA_00483 PF03631 Virulence factor BrkB ABBFA_00484 PF03358 NADPH-dependent FMN reductase ABBFA_00489 PF02130 Uncharacterized protein family UPF0054 ABBFA_00490 PF02562 PhoH-like protein ABBFA_00491 PF04055 Radical SAM superfamily ABBFA_00491 PF01938 TRAM domain ABBFA_00491 PF00919 Uncharacterized protein family UPF0004 ABBFA_00492 PF10145 Phage-related minor tail protein ABBFA_00492 PF01551 Peptidase family M23 ABBFA_00492 PF01464 Transglycosylase SLT domain ABBFA_00494 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ABBFA_00494 PF00056 lactate/malate dehydrogenase, NAD binding domain ABBFA_00498 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ABBFA_00499 PF01066 CDP-alcohol phosphatidyltransferase ABBFA_00505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_00505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_00505 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_00506 PF17932 Tetracyclin repressor-like, C-terminal domain ABBFA_00506 PF00440 Bacterial regulatory proteins, tetR family ABBFA_00509 PF01039 Carboxyl transferase domain ABBFA_00510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_00510 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_00510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_00512 PF00289 Biotin carboxylase, N-terminal domain ABBFA_00512 PF02785 Biotin carboxylase C-terminal domain ABBFA_00512 PF00364 Biotin-requiring enzyme ABBFA_00512 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_00514 PF04386 Stringent starvation protein B ABBFA_00515 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_00515 PF13417 Glutathione S-transferase, N-terminal domain ABBFA_00516 PF00380 Ribosomal protein S9/S16 ABBFA_00517 PF00572 Ribosomal protein L13 ABBFA_00518 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ABBFA_00519 PF00398 Ribosomal RNA adenine dimethylase ABBFA_00520 PF00149 Calcineurin-like phosphoesterase ABBFA_00524 PF01926 50S ribosome-binding GTPase ABBFA_00524 PF13167 GTP-binding GTPase N-terminal ABBFA_00524 PF16360 GTP-binding GTPase Middle Region ABBFA_00526 PF13091 PLD-like domain ABBFA_00527 PF00149 Calcineurin-like phosphoesterase ABBFA_00527 PF10518 TAT (twin-arginine translocation) pathway signal sequence ABBFA_00528 PF00691 OmpA family ABBFA_00528 PF01389 OmpA-like transmembrane domain ABBFA_00529 PF17152 Periplasmic sensor domain ABBFA_00529 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_00533 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_00533 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_00535 PF04273 Putative phosphatase (DUF442) ABBFA_00535 PF00753 Metallo-beta-lactamase superfamily ABBFA_00536 PF00561 alpha/beta hydrolase fold ABBFA_00537 PF00085 Thioredoxin ABBFA_00538 PF03061 Thioesterase superfamily ABBFA_00540 PF04461 Protein of unknown function (DUF520) ABBFA_00542 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ABBFA_00542 PF01266 FAD dependent oxidoreductase ABBFA_00544 PF03795 YCII-related domain ABBFA_00545 PF04279 Intracellular septation protein A ABBFA_00546 PF02811 PHP domain ABBFA_00547 PF01062 Bestrophin, RFP-TM, chloride channel ABBFA_00548 PF04002 RadC-like JAB domain ABBFA_00549 PF02441 Flavoprotein ABBFA_00549 PF04127 DNA / pantothenate metabolism flavoprotein ABBFA_00550 PF02355 Protein export membrane protein ABBFA_00550 PF07549 SecD/SecF GG Motif ABBFA_00551 PF02355 Protein export membrane protein ABBFA_00551 PF13721 SecD export protein N-terminal TM region ABBFA_00551 PF07549 SecD/SecF GG Motif ABBFA_00552 PF02699 Preprotein translocase subunit ABBFA_00553 PF01702 Queuine tRNA-ribosyltransferase ABBFA_00556 PF02547 Queuosine biosynthesis protein ABBFA_00558 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00558 PF07689 KaiB domain ABBFA_00558 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_00559 PF08335 GlnD PII-uridylyltransferase ABBFA_00559 PF03710 Glutamate-ammonia ligase adenylyltransferase ABBFA_00560 PF01063 Amino-transferase class IV ABBFA_00563 PF01522 Polysaccharide deacetylase ABBFA_00564 PF00535 Glycosyl transferase family 2 ABBFA_00565 PF13439 Glycosyltransferase Family 4 ABBFA_00565 PF00534 Glycosyl transferases group 1 ABBFA_00570 PF17102 Stealth protein CR3, conserved region 3 ABBFA_00570 PF17101 Stealth protein CR1, conserved region 1 ABBFA_00570 PF11380 Stealth protein CR2, conserved region 2 ABBFA_00571 PF02938 GAD domain ABBFA_00571 PF00152 tRNA synthetases class II (D, K and N) ABBFA_00571 PF01336 OB-fold nucleic acid binding domain ABBFA_00573 PF07715 TonB-dependent Receptor Plug Domain ABBFA_00573 PF00593 TonB dependent receptor ABBFA_00577 PF06146 Phosphate-starvation-inducible E ABBFA_00578 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_00578 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_00578 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_00578 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_00579 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_00579 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_00579 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_00579 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_00581 PF00672 HAMP domain ABBFA_00581 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00581 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_00582 PF00486 Transcriptional regulatory protein, C terminal ABBFA_00582 PF00072 Response regulator receiver domain ABBFA_00583 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ABBFA_00587 PF01923 Cobalamin adenosyltransferase ABBFA_00588 PF07715 TonB-dependent Receptor Plug Domain ABBFA_00588 PF00593 TonB dependent receptor ABBFA_00589 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ABBFA_00590 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_00595 PF00290 Tryptophan synthase alpha chain ABBFA_00596 PF01039 Carboxyl transferase domain ABBFA_00597 PF08245 Mur ligase middle domain ABBFA_00597 PF02875 Mur ligase family, glutamate ligase domain ABBFA_00600 PF00753 Metallo-beta-lactamase superfamily ABBFA_00601 PF00578 AhpC/TSA family ABBFA_00601 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABBFA_00602 PF07517 SecA DEAD-like domain ABBFA_00602 PF02810 SEC-C motif ABBFA_00602 PF07516 SecA Wing and Scaffold domain ABBFA_00602 PF01043 SecA preprotein cross-linking domain ABBFA_00604 PF07690 Major Facilitator Superfamily ABBFA_00604 PF00083 Sugar (and other) transporter ABBFA_00605 PF03006 Haemolysin-III related ABBFA_00607 PF13673 Acetyltransferase (GNAT) domain ABBFA_00610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_00610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_00610 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_00611 PF02803 Thiolase, C-terminal domain ABBFA_00611 PF00108 Thiolase, N-terminal domain ABBFA_00612 PF02311 AraC-like ligand binding domain ABBFA_00612 PF12833 Helix-turn-helix domain ABBFA_00613 PF02515 CoA-transferase family III ABBFA_00614 PF04966 Carbohydrate-selective porin, OprB family ABBFA_00615 PF01011 PQQ enzyme repeat ABBFA_00616 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABBFA_00616 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABBFA_00618 PF00893 Small Multidrug Resistance protein ABBFA_00620 PF00108 Thiolase, N-terminal domain ABBFA_00620 PF02803 Thiolase, C-terminal domain ABBFA_00622 PF00691 OmpA family ABBFA_00622 PF13505 Outer membrane protein beta-barrel domain ABBFA_00624 PF01139 tRNA-splicing ligase RtcB ABBFA_00625 PF00324 Amino acid permease ABBFA_00626 PF05175 Methyltransferase small domain ABBFA_00626 PF08468 Methyltransferase small domain N-terminal ABBFA_00627 PF00860 Permease family ABBFA_00629 PF01741 Large-conductance mechanosensitive channel, MscL ABBFA_00632 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ABBFA_00632 PF06827 Zinc finger found in FPG and IleRS ABBFA_00632 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ABBFA_00633 PF02245 Methylpurine-DNA glycosylase (MPG) ABBFA_00634 PF07715 TonB-dependent Receptor Plug Domain ABBFA_00634 PF00593 TonB dependent receptor ABBFA_00635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_00636 PF03547 Membrane transport protein ABBFA_00638 PF10411 Disulfide bond isomerase protein N-terminus ABBFA_00638 PF13098 Thioredoxin-like domain ABBFA_00639 PF01571 Aminomethyltransferase folate-binding domain ABBFA_00641 PF04343 Protein of unknown function, DUF488 ABBFA_00642 PF03831 PhnA domain ABBFA_00642 PF08274 PhnA Zinc-Ribbon ABBFA_00643 PF07411 Domain of unknown function (DUF1508) ABBFA_00644 PF04073 Aminoacyl-tRNA editing domain ABBFA_00644 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABBFA_00644 PF03129 Anticodon binding domain ABBFA_00645 PF00873 AcrB/AcrD/AcrF family ABBFA_00648 PF00072 Response regulator receiver domain ABBFA_00649 PF00072 Response regulator receiver domain ABBFA_00650 PF01584 CheW-like domain ABBFA_00651 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ABBFA_00651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ABBFA_00652 PF01584 CheW-like domain ABBFA_00652 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00652 PF00072 Response regulator receiver domain ABBFA_00652 PF01627 Hpt domain ABBFA_00654 PF04055 Radical SAM superfamily ABBFA_00654 PF06969 HemN C-terminal domain ABBFA_00656 PF07687 Peptidase dimerisation domain ABBFA_00656 PF01546 Peptidase family M20/M25/M40 ABBFA_00657 PF08085 Entericidin EcnA/B family ABBFA_00659 PF04304 Protein of unknown function (DUF454) ABBFA_00660 PF17969 L,D-transpeptidase C-terminal domain ABBFA_00660 PF03734 L,D-transpeptidase catalytic domain ABBFA_00668 PF00667 FAD binding domain ABBFA_00668 PF00175 Oxidoreductase NAD-binding domain ABBFA_00668 PF00258 Flavodoxin ABBFA_00670 PF12805 FUSC-like inner membrane protein yccS ABBFA_00671 PF07690 Major Facilitator Superfamily ABBFA_00672 PF00881 Nitroreductase family ABBFA_00674 PF01235 Sodium:alanine symporter family ABBFA_00675 PF01734 Patatin-like phospholipase ABBFA_00676 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_00676 PF13291 ACT domain ABBFA_00677 PF05992 SbmA/BacA-like family ABBFA_00682 PF02637 GatB domain ABBFA_00682 PF02934 GatB/GatE catalytic domain ABBFA_00683 PF01425 Amidase ABBFA_00684 PF02686 Glu-tRNAGln amidotransferase C subunit ABBFA_00686 PF04085 rod shape-determining protein MreC ABBFA_00687 PF04093 rod shape-determining protein MreD ABBFA_00688 PF02545 Maf-like protein ABBFA_00689 PF10150 Ribonuclease E/G family ABBFA_00689 PF00575 S1 RNA binding domain ABBFA_00691 PF06974 Protein of unknown function (DUF1298) ABBFA_00691 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain ABBFA_00692 PF01507 Phosphoadenosine phosphosulfate reductase family ABBFA_00695 PF02525 Flavodoxin-like fold ABBFA_00700 PF02673 Bacitracin resistance protein BacA ABBFA_00701 PF06719 AraC-type transcriptional regulator N-terminus ABBFA_00701 PF12833 Helix-turn-helix domain ABBFA_00702 PF00109 Beta-ketoacyl synthase, N-terminal domain ABBFA_00702 PF08659 KR domain ABBFA_00702 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_00702 PF02801 Beta-ketoacyl synthase, C-terminal domain ABBFA_00702 PF14765 Polyketide synthase dehydratase ABBFA_00702 PF00550 Phosphopantetheine attachment site ABBFA_00702 PF08990 Erythronolide synthase docking ABBFA_00702 PF00698 Acyl transferase domain ABBFA_00702 PF09277 Erythronolide synthase, docking ABBFA_00702 PF16197 Ketoacyl-synthetase C-terminal extension ABBFA_00703 PF01965 DJ-1/PfpI family ABBFA_00705 PF00324 Amino acid permease ABBFA_00706 PF04303 PrpF protein ABBFA_00707 PF00348 Polyprenyl synthetase ABBFA_00708 PF04237 YjbR ABBFA_00709 PF01145 SPFH domain / Band 7 family ABBFA_00711 PF01734 Patatin-like phospholipase ABBFA_00715 PF08019 Phosphoethanolamine transferase EptA/EptB ABBFA_00715 PF00884 Sulfatase ABBFA_00716 PF00486 Transcriptional regulatory protein, C terminal ABBFA_00716 PF00072 Response regulator receiver domain ABBFA_00717 PF08521 Two-component sensor kinase N-terminal ABBFA_00717 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_00717 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_00719 PF00909 Ammonium Transporter Family ABBFA_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00720 PF03466 LysR substrate binding domain ABBFA_00724 PF08264 Anticodon-binding domain of tRNA ABBFA_00724 PF10458 Valyl tRNA synthetase tRNA binding arm ABBFA_00724 PF00133 tRNA synthetases class I (I, L, M and V) ABBFA_00728 PF01906 Putative heavy-metal-binding ABBFA_00729 PF01906 Putative heavy-metal-binding ABBFA_00730 PF02321 Outer membrane efflux protein ABBFA_00731 PF00873 AcrB/AcrD/AcrF family ABBFA_00732 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_00732 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_00733 PF01569 PAP2 superfamily ABBFA_00735 PF00348 Polyprenyl synthetase ABBFA_00736 PF00829 Ribosomal prokaryotic L21 protein ABBFA_00737 PF01016 Ribosomal L27 protein ABBFA_00738 PF03548 Outer membrane lipoprotein carrier protein LolA ABBFA_00740 PF02403 Seryl-tRNA synthetase N-terminal domain ABBFA_00740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABBFA_00741 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABBFA_00741 PF14824 Sirohaem biosynthesis protein central ABBFA_00741 PF10414 Sirohaem synthase dimerisation region ABBFA_00742 PF00588 SpoU rRNA Methylase family ABBFA_00743 PF01638 HxlR-like helix-turn-helix ABBFA_00744 PF03358 NADPH-dependent FMN reductase ABBFA_00745 PF13520 Amino acid permease ABBFA_00746 PF00465 Iron-containing alcohol dehydrogenase ABBFA_00748 PF03099 Biotin/lipoate A/B protein ligase family ABBFA_00749 PF04359 Protein of unknown function (DUF493) ABBFA_00750 PF00140 Sigma-70 factor, region 1.2 ABBFA_00750 PF04546 Sigma-70, non-essential region ABBFA_00750 PF03979 Sigma-70 factor, region 1.1 ABBFA_00750 PF04539 Sigma-70 region 3 ABBFA_00750 PF04542 Sigma-70 region 2 ABBFA_00750 PF04545 Sigma-70, region 4 ABBFA_00755 PF00285 Citrate synthase, C-terminal domain ABBFA_00756 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABBFA_00757 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ABBFA_00758 PF02910 Fumarate reductase flavoprotein C-term ABBFA_00758 PF00890 FAD binding domain ABBFA_00759 PF13085 2Fe-2S iron-sulfur cluster binding domain ABBFA_00760 PF16870 2-oxoglutarate dehydrogenase C-terminal ABBFA_00760 PF16078 2-oxoglutarate dehydrogenase N-terminus ABBFA_00760 PF02779 Transketolase, pyrimidine binding domain ABBFA_00760 PF00676 Dehydrogenase E1 component ABBFA_00761 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABBFA_00761 PF00364 Biotin-requiring enzyme ABBFA_00761 PF02817 e3 binding domain ABBFA_00762 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_00762 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_00763 PF00549 CoA-ligase ABBFA_00763 PF08442 ATP-grasp domain ABBFA_00764 PF02629 CoA binding domain ABBFA_00764 PF00549 CoA-ligase ABBFA_00767 PF00579 tRNA synthetases class I (W and Y) ABBFA_00768 PF05661 Protein of unknown function (DUF808) ABBFA_00769 PF04228 Putative neutral zinc metallopeptidase ABBFA_00770 PF00999 Sodium/hydrogen exchanger family ABBFA_00773 PF09587 Bacterial capsule synthesis protein PGA_cap ABBFA_00775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABBFA_00776 PF00582 Universal stress protein family ABBFA_00777 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_00778 PF01272 Transcription elongation factor, GreA/GreB, C-term ABBFA_00778 PF03449 Transcription elongation factor, N-terminal ABBFA_00779 PF02142 MGS-like domain ABBFA_00779 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_00779 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ABBFA_00780 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ABBFA_00780 PF00117 Glutamine amidotransferase class-I ABBFA_00783 PF01985 CRS1 / YhbY (CRM) domain ABBFA_00784 PF01728 FtsJ-like methyltransferase ABBFA_00785 PF01434 Peptidase family M41 ABBFA_00785 PF06480 FtsH Extracellular ABBFA_00785 PF17862 AAA+ lid domain ABBFA_00785 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_00786 PF00809 Pterin binding enzyme ABBFA_00790 PF09423 PhoD-like phosphatase ABBFA_00790 PF16655 PhoD-like phosphatase, N-terminal domain ABBFA_00793 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ABBFA_00793 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ABBFA_00796 PF00083 Sugar (and other) transporter ABBFA_00797 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ABBFA_00797 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ABBFA_00798 PF01266 FAD dependent oxidoreductase ABBFA_00798 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ABBFA_00799 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ABBFA_00799 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ABBFA_00800 PF00781 Diacylglycerol kinase catalytic domain ABBFA_00801 PF00149 Calcineurin-like phosphoesterase ABBFA_00803 PF00166 Chaperonin 10 Kd subunit ABBFA_00804 PF00118 TCP-1/cpn60 chaperonin family ABBFA_00805 PF01219 Prokaryotic diacylglycerol kinase ABBFA_00806 PF00753 Metallo-beta-lactamase superfamily ABBFA_00807 PF03009 Glycerophosphoryl diester phosphodiesterase family ABBFA_00808 PF00873 AcrB/AcrD/AcrF family ABBFA_00810 PF01435 Peptidase family M48 ABBFA_00811 PF01464 Transglycosylase SLT domain ABBFA_00812 PF01171 PP-loop family ABBFA_00814 PF01464 Transglycosylase SLT domain ABBFA_00814 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_00815 PF03449 Transcription elongation factor, N-terminal ABBFA_00815 PF01272 Transcription elongation factor, GreA/GreB, C-term ABBFA_00818 PF00975 Thioesterase domain ABBFA_00818 PF00550 Phosphopantetheine attachment site ABBFA_00818 PF00668 Condensation domain ABBFA_00818 PF00501 AMP-binding enzyme ABBFA_00818 PF13193 AMP-binding enzyme C-terminal domain ABBFA_00825 PF00881 Nitroreductase family ABBFA_00828 PF02595 Glycerate kinase family ABBFA_00829 PF00384 Molybdopterin oxidoreductase ABBFA_00830 PF02634 FdhD/NarQ family ABBFA_00831 PF06803 Protein of unknown function (DUF1232) ABBFA_00832 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABBFA_00832 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABBFA_00832 PF11890 Domain of unknown function (DUF3410) ABBFA_00833 PF00152 tRNA synthetases class II (D, K and N) ABBFA_00835 PF18073 Rubredoxin metal binding domain ABBFA_00836 PF00324 Amino acid permease ABBFA_00838 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ABBFA_00838 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ABBFA_00839 PF01678 Diaminopimelate epimerase ABBFA_00840 PF00561 alpha/beta hydrolase fold ABBFA_00841 PF01810 LysE type translocator ABBFA_00842 PF02899 Phage integrase, N-terminal SAM-like domain ABBFA_00842 PF00589 Phage integrase family ABBFA_00843 PF01012 Electron transfer flavoprotein domain ABBFA_00844 PF01012 Electron transfer flavoprotein domain ABBFA_00844 PF00766 Electron transfer flavoprotein FAD-binding domain ABBFA_00845 PF00521 DNA gyrase/topoisomerase IV, subunit A ABBFA_00845 PF03989 DNA gyrase C-terminal domain, beta-propeller ABBFA_00848 PF00535 Glycosyl transferase family 2 ABBFA_00852 PF13533 Biotin-lipoyl like ABBFA_00854 PF00266 Aminotransferase class-V ABBFA_00857 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ABBFA_00859 PF12704 MacB-like periplasmic core domain ABBFA_00859 PF02687 FtsX-like permease family ABBFA_00860 PF00005 ABC transporter ABBFA_00861 PF13567 Domain of unknown function (DUF4131) ABBFA_00861 PF03772 Competence protein ABBFA_00861 PF00753 Metallo-beta-lactamase superfamily ABBFA_00863 PF06965 Na+/H+ antiporter 1 ABBFA_00863 PF01343 Peptidase family S49 ABBFA_00864 PF12697 Alpha/beta hydrolase family ABBFA_00865 PF00551 Formyl transferase ABBFA_00866 PF00586 AIR synthase related protein, N-terminal domain ABBFA_00866 PF02769 AIR synthase related protein, C-terminal domain ABBFA_00867 PF01594 AI-2E family transporter ABBFA_00868 PF11638 DnaA N-terminal domain ABBFA_00868 PF00308 Bacterial dnaA protein ABBFA_00868 PF08299 Bacterial dnaA protein helix-turn-helix ABBFA_00874 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABBFA_00874 PF00588 SpoU rRNA Methylase family ABBFA_00875 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ABBFA_00877 PF00691 OmpA family ABBFA_00878 PF04052 TolB amino-terminal domain ABBFA_00878 PF07676 WD40-like Beta Propeller Repeat ABBFA_00880 PF02472 Biopolymer transport protein ExbD/TolR ABBFA_00881 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_00882 PF03061 Thioesterase superfamily ABBFA_00883 PF01546 Peptidase family M20/M25/M40 ABBFA_00883 PF07687 Peptidase dimerisation domain ABBFA_00884 PF05491 RuvB C-terminal winged helix domain ABBFA_00884 PF05496 Holliday junction DNA helicase RuvB P-loop domain ABBFA_00884 PF17864 RuvB AAA lid domain ABBFA_00885 PF07499 RuvA, C-terminal domain ABBFA_00885 PF01330 RuvA N terminal domain ABBFA_00886 PF01966 HD domain ABBFA_00887 PF02769 AIR synthase related protein, C-terminal domain ABBFA_00887 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ABBFA_00887 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ABBFA_00888 PF07690 Major Facilitator Superfamily ABBFA_00890 PF01784 NIF3 (NGG1p interacting factor 3) ABBFA_00891 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_00892 PF00293 NUDIX domain ABBFA_00892 PF01467 Cytidylyltransferase-like ABBFA_00894 PF00578 AhpC/TSA family ABBFA_00897 PF06508 Queuosine biosynthesis protein QueC ABBFA_00899 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_00899 PF14602 Hexapeptide repeat of succinyl-transferase ABBFA_00899 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ABBFA_00901 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00901 PF03466 LysR substrate binding domain ABBFA_00902 PF00005 ABC transporter ABBFA_00902 PF12857 TOBE-like domain ABBFA_00903 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_00904 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_00907 PF01063 Amino-transferase class IV ABBFA_00908 PF02618 YceG-like family ABBFA_00909 PF02223 Thymidylate kinase ABBFA_00911 PF00890 FAD binding domain ABBFA_00911 PF02910 Fumarate reductase flavoprotein C-term ABBFA_00912 PF13180 PDZ domain ABBFA_00914 PF06421 GTP-binding protein LepA C-terminus ABBFA_00914 PF03144 Elongation factor Tu domain 2 ABBFA_00914 PF00009 Elongation factor Tu GTP binding domain ABBFA_00914 PF00679 Elongation factor G C-terminus ABBFA_00915 PF10502 Signal peptidase, peptidase S26 ABBFA_00917 PF00035 Double-stranded RNA binding motif ABBFA_00917 PF14622 Ribonuclease-III-like ABBFA_00918 PF01926 50S ribosome-binding GTPase ABBFA_00918 PF07650 KH domain ABBFA_00920 PF02565 Recombination protein O C terminal ABBFA_00920 PF11967 Recombination protein O N terminal ABBFA_00921 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ABBFA_00922 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) ABBFA_00923 PF00106 short chain dehydrogenase ABBFA_00930 PF17151 Periplasmic sensor domain ABBFA_00930 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_00932 PF17757 UvrB interaction domain ABBFA_00932 PF12344 Ultra-violet resistance protein B ABBFA_00932 PF04851 Type III restriction enzyme, res subunit ABBFA_00932 PF00271 Helicase conserved C-terminal domain ABBFA_00932 PF02151 UvrB/uvrC motif ABBFA_00934 PF00892 EamA-like transporter family ABBFA_00935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABBFA_00935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABBFA_00938 PF01018 GTP1/OBG ABBFA_00938 PF01926 50S ribosome-binding GTPase ABBFA_00939 PF00696 Amino acid kinase family ABBFA_00939 PF01472 PUA domain ABBFA_00941 PF07759 Protein of unknown function (DUF1615) ABBFA_00942 PF01207 Dihydrouridine synthase (Dus) ABBFA_00943 PF03060 Nitronate monooxygenase ABBFA_00946 PF02350 UDP-N-acetylglucosamine 2-epimerase ABBFA_00952 PF03441 FAD binding domain of DNA photolyase ABBFA_00952 PF00875 DNA photolyase ABBFA_00953 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_00954 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_00955 PF00768 D-alanyl-D-alanine carboxypeptidase ABBFA_00955 PF07943 Penicillin-binding protein 5, C-terminal domain ABBFA_00957 PF03971 Monomeric isocitrate dehydrogenase ABBFA_00958 PF00849 RNA pseudouridylate synthase ABBFA_00959 PF00180 Isocitrate/isopropylmalate dehydrogenase ABBFA_00963 PF06779 Uncharacterised MFS-type transporter YbfB ABBFA_00964 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_00964 PF03466 LysR substrate binding domain ABBFA_00966 PF02567 Phenazine biosynthesis-like protein ABBFA_00967 PF00675 Insulinase (Peptidase family M16) ABBFA_00967 PF05193 Peptidase M16 inactive domain ABBFA_00972 PF01867 CRISPR associated protein Cas1 ABBFA_00974 PF09611 CRISPR-associated protein (Cas_Csy1) ABBFA_00975 PF09614 CRISPR-associated protein (Cas_Csy2) ABBFA_00976 PF09615 CRISPR-associated protein (Cas_Csy3) ABBFA_00978 PF02581 Thiamine monophosphate synthase ABBFA_00979 PF00202 Aminotransferase class-III ABBFA_00981 PF00849 RNA pseudouridylate synthase ABBFA_00982 PF18337 RapA N-terminal Tudor like domain ABBFA_00982 PF18339 RapA N-terminal Tudor like domain 1 ABBFA_00982 PF00176 SNF2 family N-terminal domain ABBFA_00982 PF12137 RNA polymerase recycling family C-terminal ABBFA_00982 PF00271 Helicase conserved C-terminal domain ABBFA_00984 PF00440 Bacterial regulatory proteins, tetR family ABBFA_00985 PF00175 Oxidoreductase NAD-binding domain ABBFA_00985 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_00985 PF00970 Oxidoreductase FAD-binding domain ABBFA_00986 PF00487 Fatty acid desaturase ABBFA_00988 PF17754 MftR C-terminal domain ABBFA_00988 PF00440 Bacterial regulatory proteins, tetR family ABBFA_00990 PF00202 Aminotransferase class-III ABBFA_00991 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABBFA_00992 PF00171 Aldehyde dehydrogenase family ABBFA_00993 PF01037 Lrp/AsnC ligand binding domain ABBFA_00994 PF00205 Thiamine pyrophosphate enzyme, central domain ABBFA_00994 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABBFA_00994 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABBFA_00995 PF00324 Amino acid permease ABBFA_00996 PF12849 PBP superfamily domain ABBFA_00997 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_00998 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_00999 PF00005 ABC transporter ABBFA_01000 PF01343 Peptidase family S49 ABBFA_01000 PF08496 Peptidase family S49 N-terminal ABBFA_01003 PF08328 Adenylosuccinate lyase C-terminal ABBFA_01003 PF00206 Lyase ABBFA_01004 PF04356 Protein of unknown function (DUF489) ABBFA_01006 PF00293 NUDIX domain ABBFA_01006 PF13344 Haloacid dehalogenase-like hydrolase ABBFA_01007 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_01008 PF00768 D-alanyl-D-alanine carboxypeptidase ABBFA_01008 PF07943 Penicillin-binding protein 5, C-terminal domain ABBFA_01011 PF01975 Survival protein SurE ABBFA_01012 PF01551 Peptidase family M23 ABBFA_01012 PF01476 LysM domain ABBFA_01013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01013 PF03466 LysR substrate binding domain ABBFA_01014 PF05362 Lon protease (S16) C-terminal proteolytic domain ABBFA_01014 PF13654 AAA domain ABBFA_01015 PF07690 Major Facilitator Superfamily ABBFA_01016 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_01017 PF13593 SBF-like CPA transporter family (DUF4137) ABBFA_01018 PF01197 Ribosomal protein L31 ABBFA_01019 PF12792 CSS motif domain associated with EAL ABBFA_01019 PF00563 EAL domain ABBFA_01021 PF04055 Radical SAM superfamily ABBFA_01022 PF08207 Elongation factor P (EF-P) KOW-like domain ABBFA_01022 PF01132 Elongation factor P (EF-P) OB domain ABBFA_01022 PF09285 Elongation factor P, C-terminal ABBFA_01023 PF13722 5TM C-terminal transporter carbon starvation CstA ABBFA_01023 PF02554 Carbon starvation protein CstA ABBFA_01024 PF04328 Selenoprotein, putative ABBFA_01032 PF17954 Quercetinase C-terminal cupin domain ABBFA_01032 PF02678 Pirin ABBFA_01033 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_01034 PF13309 HTH domain ABBFA_01034 PF08348 YheO-like PAS domain ABBFA_01036 PF00501 AMP-binding enzyme ABBFA_01036 PF13193 AMP-binding enzyme C-terminal domain ABBFA_01036 PF00550 Phosphopantetheine attachment site ABBFA_01036 PF00668 Condensation domain ABBFA_01037 PF00975 Thioesterase domain ABBFA_01037 PF00501 AMP-binding enzyme ABBFA_01037 PF13193 AMP-binding enzyme C-terminal domain ABBFA_01037 PF00550 Phosphopantetheine attachment site ABBFA_01037 PF00668 Condensation domain ABBFA_01040 PF01032 FecCD transport family ABBFA_01041 PF01032 FecCD transport family ABBFA_01042 PF00005 ABC transporter ABBFA_01043 PF01497 Periplasmic binding protein ABBFA_01044 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01044 PF00593 TonB dependent receptor ABBFA_01045 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABBFA_01046 PF00668 Condensation domain ABBFA_01046 PF00501 AMP-binding enzyme ABBFA_01046 PF00550 Phosphopantetheine attachment site ABBFA_01047 PF13193 AMP-binding enzyme C-terminal domain ABBFA_01047 PF00501 AMP-binding enzyme ABBFA_01048 PF00857 Isochorismatase family ABBFA_01048 PF00550 Phosphopantetheine attachment site ABBFA_01049 PF00282 Pyridoxal-dependent decarboxylase conserved domain ABBFA_01051 PF00664 ABC transporter transmembrane region ABBFA_01051 PF00005 ABC transporter ABBFA_01052 PF00005 ABC transporter ABBFA_01052 PF00664 ABC transporter transmembrane region ABBFA_01053 PF00975 Thioesterase domain ABBFA_01055 PF00425 chorismate binding enzyme ABBFA_01057 PF01208 Uroporphyrinogen decarboxylase (URO-D) ABBFA_01058 PF05675 Protein of unknown function (DUF817) ABBFA_01061 PF00144 Beta-lactamase ABBFA_01063 PF01799 [2Fe-2S] binding domain ABBFA_01063 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_01064 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ABBFA_01064 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ABBFA_01067 PF00218 Indole-3-glycerol phosphate synthase ABBFA_01068 PF00591 Glycosyl transferase family, a/b domain ABBFA_01068 PF02885 Glycosyl transferase family, helical bundle domain ABBFA_01069 PF00593 TonB dependent receptor ABBFA_01069 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01070 PF01433 Peptidase family M1 domain ABBFA_01070 PF11838 ERAP1-like C-terminal domain ABBFA_01071 PF00117 Glutamine amidotransferase class-I ABBFA_01073 PF00854 POT family ABBFA_01075 PF04345 Chorismate lyase ABBFA_01076 PF01040 UbiA prenyltransferase family ABBFA_01083 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ABBFA_01083 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ABBFA_01084 PF01784 NIF3 (NGG1p interacting factor 3) ABBFA_01085 PF13180 PDZ domain ABBFA_01086 PF01743 Poly A polymerase head domain ABBFA_01086 PF12627 Probable RNA and SrmB- binding site of polymerase A ABBFA_01087 PF03949 Malic enzyme, NAD binding domain ABBFA_01087 PF01515 Phosphate acetyl/butaryl transferase ABBFA_01087 PF00390 Malic enzyme, N-terminal domain ABBFA_01088 PF00563 EAL domain ABBFA_01088 PF03707 Bacterial signalling protein N terminal repeat ABBFA_01088 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_01089 PF04452 RNA methyltransferase ABBFA_01090 PF02219 Methylenetetrahydrofolate reductase ABBFA_01091 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ABBFA_01091 PF05221 S-adenosyl-L-homocysteine hydrolase ABBFA_01094 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01094 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01094 PF09317 Domain of unknown function (DUF1974) ABBFA_01095 PF04055 Radical SAM superfamily ABBFA_01096 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01096 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_01099 PF07690 Major Facilitator Superfamily ABBFA_01101 PF00557 Metallopeptidase family M24 ABBFA_01102 PF00318 Ribosomal protein S2 ABBFA_01103 PF00889 Elongation factor TS ABBFA_01105 PF12833 Helix-turn-helix domain ABBFA_01109 PF03330 Lytic transglycolase ABBFA_01109 PF05036 Sporulation related domain ABBFA_01110 PF13406 Transglycosylase SLT domain ABBFA_01111 PF01098 Cell cycle protein ABBFA_01113 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ABBFA_01113 PF14489 QueF-like protein ABBFA_01114 PF01061 ABC-2 type transporter ABBFA_01115 PF00005 ABC transporter ABBFA_01120 PF00464 Serine hydroxymethyltransferase ABBFA_01121 PF02321 Outer membrane efflux protein ABBFA_01122 PF00873 AcrB/AcrD/AcrF family ABBFA_01123 PF13533 Biotin-lipoyl like ABBFA_01124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01124 PF03466 LysR substrate binding domain ABBFA_01125 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_01126 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01127 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01128 PF00005 ABC transporter ABBFA_01129 PF00893 Small Multidrug Resistance protein ABBFA_01130 PF00037 4Fe-4S binding domain ABBFA_01132 PF00155 Aminotransferase class I and II ABBFA_01132 PF00392 Bacterial regulatory proteins, gntR family ABBFA_01133 PF02567 Phenazine biosynthesis-like protein ABBFA_01134 PF00175 Oxidoreductase NAD-binding domain ABBFA_01134 PF00970 Oxidoreductase FAD-binding domain ABBFA_01135 PF18389 TrmO C-terminal domain ABBFA_01135 PF01980 tRNA-methyltransferase O ABBFA_01137 PF00437 Type II/IV secretion system protein ABBFA_01139 PF00072 Response regulator receiver domain ABBFA_01139 PF00486 Transcriptional regulatory protein, C terminal ABBFA_01140 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_01140 PF08521 Two-component sensor kinase N-terminal ABBFA_01142 PF00293 NUDIX domain ABBFA_01144 PF14814 Bifunctional transglycosylase second domain ABBFA_01144 PF00912 Transglycosylase ABBFA_01144 PF00905 Penicillin binding protein transpeptidase domain ABBFA_01145 PF01513 ATP-NAD kinase ABBFA_01146 PF07023 Protein of unknown function (DUF1315) ABBFA_01147 PF02885 Glycosyl transferase family, helical bundle domain ABBFA_01147 PF00591 Glycosyl transferase family, a/b domain ABBFA_01148 PF00375 Sodium:dicarboxylate symporter family ABBFA_01149 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_01149 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01149 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01150 PF00756 Putative esterase ABBFA_01151 PF01817 Chorismate mutase type II ABBFA_01151 PF01842 ACT domain ABBFA_01151 PF00800 Prephenate dehydratase ABBFA_01152 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABBFA_01154 PF01546 Peptidase family M20/M25/M40 ABBFA_01154 PF07687 Peptidase dimerisation domain ABBFA_01155 PF00753 Metallo-beta-lactamase superfamily ABBFA_01157 PF03883 Peroxide stress protein YaaA ABBFA_01158 PF05690 Thiazole biosynthesis protein ThiG ABBFA_01160 PF04241 Protein of unknown function (DUF423) ABBFA_01161 PF04542 Sigma-70 region 2 ABBFA_01161 PF00140 Sigma-70 factor, region 1.2 ABBFA_01161 PF04545 Sigma-70, region 4 ABBFA_01163 PF00313 'Cold-shock' DNA-binding domain ABBFA_01164 PF00271 Helicase conserved C-terminal domain ABBFA_01164 PF00270 DEAD/DEAH box helicase ABBFA_01166 PF00881 Nitroreductase family ABBFA_01167 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ABBFA_01167 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ABBFA_01171 PF01180 Dihydroorotate dehydrogenase ABBFA_01172 PF02674 Colicin V production protein ABBFA_01173 PF00156 Phosphoribosyl transferase domain ABBFA_01176 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ABBFA_01176 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABBFA_01177 PF01435 Peptidase family M48 ABBFA_01178 PF09424 Yqey-like protein ABBFA_01179 PF01165 Ribosomal protein S21 ABBFA_01180 PF00814 Glycoprotease family ABBFA_01184 PF00069 Protein kinase domain ABBFA_01189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01189 PF03466 LysR substrate binding domain ABBFA_01190 PF00202 Aminotransferase class-III ABBFA_01191 PF00171 Aldehyde dehydrogenase family ABBFA_01192 PF00324 Amino acid permease ABBFA_01198 PF04076 Bacterial OB fold (BOF) protein ABBFA_01203 PF00561 alpha/beta hydrolase fold ABBFA_01204 PF03616 Sodium/glutamate symporter ABBFA_01206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01206 PF03466 LysR substrate binding domain ABBFA_01207 PF00248 Aldo/keto reductase family ABBFA_01208 PF00106 short chain dehydrogenase ABBFA_01211 PF00392 Bacterial regulatory proteins, gntR family ABBFA_01211 PF07729 FCD domain ABBFA_01223 PF08946 Osmosensory transporter coiled coil ABBFA_01223 PF00083 Sugar (and other) transporter ABBFA_01227 PF04403 Paraquat-inducible protein A ABBFA_01228 PF02470 MlaD protein ABBFA_01230 PF00576 HIUase/Transthyretin family ABBFA_01232 PF00072 Response regulator receiver domain ABBFA_01232 PF00486 Transcriptional regulatory protein, C terminal ABBFA_01233 PF00672 HAMP domain ABBFA_01233 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_01233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_01241 PF08521 Two-component sensor kinase N-terminal ABBFA_01241 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_01241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_01242 PF00072 Response regulator receiver domain ABBFA_01242 PF00486 Transcriptional regulatory protein, C terminal ABBFA_01246 PF01177 Asp/Glu/Hydantoin racemase ABBFA_01247 PF00892 EamA-like transporter family ABBFA_01248 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_01252 PF00375 Sodium:dicarboxylate symporter family ABBFA_01254 PF00753 Metallo-beta-lactamase superfamily ABBFA_01254 PF16123 Hydroxyacylglutathione hydrolase C-terminus ABBFA_01255 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01256 PF09383 NIL domain ABBFA_01256 PF00005 ABC transporter ABBFA_01257 PF03180 NLPA lipoprotein ABBFA_01258 PF02844 Phosphoribosylglycinamide synthetase, N domain ABBFA_01258 PF02843 Phosphoribosylglycinamide synthetase, C domain ABBFA_01258 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ABBFA_01259 PF02142 MGS-like domain ABBFA_01259 PF01808 AICARFT/IMPCHase bienzyme ABBFA_01260 PF02954 Bacterial regulatory protein, Fis family ABBFA_01264 PF01134 Glucose inhibited division protein A ABBFA_01264 PF13932 GidA associated domain ABBFA_01266 PF14403 Circularly permuted ATP-grasp type 2 ABBFA_01268 PF08379 Bacterial transglutaminase-like N-terminal region ABBFA_01268 PF01841 Transglutaminase-like superfamily ABBFA_01270 PF01168 Alanine racemase, N-terminal domain ABBFA_01270 PF00842 Alanine racemase, C-terminal domain ABBFA_01271 PF00772 DnaB-like helicase N terminal domain ABBFA_01271 PF03796 DnaB-like helicase C terminal domain ABBFA_01272 PF03948 Ribosomal protein L9, C-terminal domain ABBFA_01272 PF01281 Ribosomal protein L9, N-terminal domain ABBFA_01273 PF01084 Ribosomal protein S18 ABBFA_01274 PF01250 Ribosomal protein S6 ABBFA_01275 PF01040 UbiA prenyltransferase family ABBFA_01276 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ABBFA_01277 PF00510 Cytochrome c oxidase subunit III ABBFA_01278 PF00115 Cytochrome C and Quinol oxidase polypeptide I ABBFA_01279 PF06481 COX Aromatic Rich Motif ABBFA_01279 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ABBFA_01281 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ABBFA_01281 PF02896 PEP-utilising enzyme, TIM barrel domain ABBFA_01281 PF00391 PEP-utilising enzyme, mobile domain ABBFA_01282 PF03618 Kinase/pyrophosphorylase ABBFA_01284 PF14883 Hypothetical glycosyl hydrolase family 13 ABBFA_01284 PF01522 Polysaccharide deacetylase ABBFA_01285 PF00535 Glycosyl transferase family 2 ABBFA_01286 PF13994 PgaD-like protein ABBFA_01288 PF00296 Luciferase-like monooxygenase ABBFA_01291 PF03466 LysR substrate binding domain ABBFA_01291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01293 PF03462 PCRF domain ABBFA_01293 PF00472 RF-1 domain ABBFA_01294 PF13847 Methyltransferase domain ABBFA_01294 PF17827 PrmC N-terminal domain ABBFA_01295 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01296 PF09084 NMT1/THI5 like ABBFA_01297 PF12833 Helix-turn-helix domain ABBFA_01298 PF00106 short chain dehydrogenase ABBFA_01299 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01299 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01299 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_01300 PF00501 AMP-binding enzyme ABBFA_01300 PF13193 AMP-binding enzyme C-terminal domain ABBFA_01301 PF01613 Flavin reductase like domain ABBFA_01302 PF00899 ThiF family ABBFA_01303 PF03109 ABC1 family ABBFA_01306 PF03814 Potassium-transporting ATPase A subunit ABBFA_01308 PF02669 K+-transporting ATPase, c chain ABBFA_01309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_01309 PF02702 Osmosensitive K+ channel His kinase sensor domain ABBFA_01309 PF13493 Domain of unknown function (DUF4118) ABBFA_01309 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_01310 PF00486 Transcriptional regulatory protein, C terminal ABBFA_01310 PF00072 Response regulator receiver domain ABBFA_01311 PF00120 Glutamine synthetase, catalytic domain ABBFA_01313 PF03232 Ubiquinone biosynthesis protein COQ7 ABBFA_01314 PF07690 Major Facilitator Superfamily ABBFA_01315 PF07244 Surface antigen variable number repeat ABBFA_01315 PF01103 Surface antigen ABBFA_01315 PF17243 POTRA domain TamA domain 1 ABBFA_01318 PF06434 Aconitate hydratase 2 N-terminus ABBFA_01318 PF00330 Aconitase family (aconitate hydratase) ABBFA_01318 PF11791 Aconitate B N-terminal domain ABBFA_01320 PF00027 Cyclic nucleotide-binding domain ABBFA_01320 PF00520 Ion transport protein ABBFA_01321 PF07690 Major Facilitator Superfamily ABBFA_01324 PF03466 LysR substrate binding domain ABBFA_01324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01325 PF04284 Protein of unknown function (DUF441) ABBFA_01327 PF00849 RNA pseudouridylate synthase ABBFA_01327 PF01479 S4 domain ABBFA_01330 PF00849 RNA pseudouridylate synthase ABBFA_01330 PF01479 S4 domain ABBFA_01331 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABBFA_01332 PF01119 DNA mismatch repair protein, C-terminal domain ABBFA_01332 PF08676 MutL C terminal dimerisation domain ABBFA_01334 PF17209 Hfq protein ABBFA_01336 PF00881 Nitroreductase family ABBFA_01337 PF00149 Calcineurin-like phosphoesterase ABBFA_01338 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABBFA_01339 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABBFA_01339 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ABBFA_01340 PF02540 NAD synthase ABBFA_01340 PF00117 Glutamine amidotransferase class-I ABBFA_01340 PF00958 GMP synthase C terminal domain ABBFA_01341 PF05985 Ethanolamine ammonia-lyase light chain (EutC) ABBFA_01342 PF06751 Ethanolamine ammonia lyase large subunit (EutB) ABBFA_01343 PF13520 Amino acid permease ABBFA_01344 PF00171 Aldehyde dehydrogenase family ABBFA_01347 PF00465 Iron-containing alcohol dehydrogenase ABBFA_01348 PF14493 Helix-turn-helix domain ABBFA_01348 PF05970 PIF1-like helicase ABBFA_01350 PF02110 Hydroxyethylthiazole kinase family ABBFA_01353 PF11940 Domain of unknown function (DUF3458) Ig-like fold ABBFA_01353 PF01433 Peptidase family M1 domain ABBFA_01353 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ABBFA_01356 PF13953 PapC C-terminal domain ABBFA_01356 PF13954 PapC N-terminal domain ABBFA_01356 PF00577 Outer membrane usher protein ABBFA_01361 PF01817 Chorismate mutase type II ABBFA_01362 PF01037 Lrp/AsnC ligand binding domain ABBFA_01364 PF02224 Cytidylate kinase ABBFA_01367 PF00440 Bacterial regulatory proteins, tetR family ABBFA_01368 PF00593 TonB dependent receptor ABBFA_01368 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01369 PF00924 Mechanosensitive ion channel ABBFA_01375 PF00593 TonB dependent receptor ABBFA_01375 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01379 PF12848 ABC transporter ABBFA_01379 PF00005 ABC transporter ABBFA_01380 PF00582 Universal stress protein family ABBFA_01384 PF00690 Cation transporter/ATPase, N-terminus ABBFA_01384 PF00689 Cation transporting ATPase, C-terminus ABBFA_01385 PF02308 MgtC family ABBFA_01386 PF03594 Benzoate membrane transport protein ABBFA_01387 PF01037 Lrp/AsnC ligand binding domain ABBFA_01388 PF01810 LysE type translocator ABBFA_01390 PF03466 LysR substrate binding domain ABBFA_01390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01392 PF00108 Thiolase, N-terminal domain ABBFA_01392 PF02803 Thiolase, C-terminal domain ABBFA_01397 PF07690 Major Facilitator Superfamily ABBFA_01398 PF12169 DNA polymerase III subunits gamma and tau domain III ABBFA_01398 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ABBFA_01398 PF12170 DNA polymerase III tau subunit V interacting with alpha ABBFA_01400 PF04185 Phosphoesterase family ABBFA_01400 PF05506 Domain of unknown function (DUF756) ABBFA_01401 PF03061 Thioesterase superfamily ABBFA_01402 PF00465 Iron-containing alcohol dehydrogenase ABBFA_01404 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABBFA_01405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ABBFA_01405 PF01565 FAD binding domain ABBFA_01408 PF01645 Conserved region in glutamate synthase ABBFA_01412 PF12832 MFS_1 like family ABBFA_01414 PF02785 Biotin carboxylase C-terminal domain ABBFA_01414 PF00289 Biotin carboxylase, N-terminal domain ABBFA_01414 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_01415 PF00364 Biotin-requiring enzyme ABBFA_01416 PF01220 Dehydroquinase class II ABBFA_01417 PF13438 Domain of unknown function (DUF4113) ABBFA_01417 PF00817 impB/mucB/samB family ABBFA_01417 PF11799 impB/mucB/samB family C-terminal domain ABBFA_01418 PF00005 ABC transporter ABBFA_01419 PF00072 Response regulator receiver domain ABBFA_01419 PF00486 Transcriptional regulatory protein, C terminal ABBFA_01421 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABBFA_01421 PF13806 Rieske-like [2Fe-2S] domain ABBFA_01421 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABBFA_01421 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABBFA_01421 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_01421 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01422 PF18267 Rubredoxin NAD+ reductase C-terminal domain ABBFA_01422 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_01422 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01422 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ABBFA_01422 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ABBFA_01423 PF00384 Molybdopterin oxidoreductase ABBFA_01423 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_01423 PF01568 Molydopterin dinucleotide binding domain ABBFA_01423 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_01424 PF12804 MobA-like NTP transferase domain ABBFA_01425 PF00384 Molybdopterin oxidoreductase ABBFA_01425 PF01568 Molydopterin dinucleotide binding domain ABBFA_01425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_01426 PF04055 Radical SAM superfamily ABBFA_01426 PF06463 Molybdenum Cofactor Synthesis C ABBFA_01428 PF02391 MoaE protein ABBFA_01429 PF00994 Probable molybdopterin binding domain ABBFA_01429 PF01967 MoaC family ABBFA_01430 PF03454 MoeA C-terminal region (domain IV) ABBFA_01430 PF00994 Probable molybdopterin binding domain ABBFA_01430 PF03453 MoeA N-terminal region (domain I and II) ABBFA_01431 PF01638 HxlR-like helix-turn-helix ABBFA_01432 PF00392 Bacterial regulatory proteins, gntR family ABBFA_01432 PF00155 Aminotransferase class I and II ABBFA_01433 PF00892 EamA-like transporter family ABBFA_01437 PF02635 DsrE/DsrF-like family ABBFA_01438 PF16363 GDP-mannose 4,6 dehydratase ABBFA_01439 PF00206 Lyase ABBFA_01439 PF10415 Fumarase C C-terminus ABBFA_01443 PF01266 FAD dependent oxidoreductase ABBFA_01445 PF02542 YgbB family ABBFA_01447 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABBFA_01447 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABBFA_01448 PF00440 Bacterial regulatory proteins, tetR family ABBFA_01449 PF00072 Response regulator receiver domain ABBFA_01449 PF00158 Sigma-54 interaction domain ABBFA_01449 PF02954 Bacterial regulatory protein, Fis family ABBFA_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_01450 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_01450 PF00989 PAS fold ABBFA_01451 PF04055 Radical SAM superfamily ABBFA_01451 PF18693 TRAM domain ABBFA_01451 PF00919 Uncharacterized protein family UPF0004 ABBFA_01452 PF00696 Amino acid kinase family ABBFA_01453 PF01765 Ribosome recycling factor ABBFA_01454 PF01255 Putative undecaprenyl diphosphate synthase ABBFA_01456 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ABBFA_01456 PF13288 DXP reductoisomerase C-terminal domain ABBFA_01456 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABBFA_01457 PF17820 PDZ domain ABBFA_01457 PF13180 PDZ domain ABBFA_01457 PF02163 Peptidase family M50 ABBFA_01458 PF07244 Surface antigen variable number repeat ABBFA_01458 PF01103 Surface antigen ABBFA_01460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ABBFA_01460 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_01461 PF07977 FabA-like domain ABBFA_01462 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_01462 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ABBFA_01464 PF02631 RecX family ABBFA_01465 PF00154 recA bacterial DNA recombination protein ABBFA_01466 PF01479 S4 domain ABBFA_01467 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_01472 PF01037 Lrp/AsnC ligand binding domain ABBFA_01473 PF00266 Aminotransferase class-V ABBFA_01474 PF00324 Amino acid permease ABBFA_01476 PF00082 Subtilase family ABBFA_01476 PF05922 Peptidase inhibitor I9 ABBFA_01477 PF00916 Sulfate permease family ABBFA_01477 PF01740 STAS domain ABBFA_01478 PF02586 SOS response associated peptidase (SRAP) ABBFA_01479 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_01481 PF03707 Bacterial signalling protein N terminal repeat ABBFA_01481 PF00563 EAL domain ABBFA_01481 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_01485 PF02378 Phosphotransferase system, EIIC ABBFA_01485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ABBFA_01486 PF00294 pfkB family carbohydrate kinase ABBFA_01487 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ABBFA_01487 PF02896 PEP-utilising enzyme, TIM barrel domain ABBFA_01487 PF00381 PTS HPr component phosphorylation site ABBFA_01487 PF05524 PEP-utilising enzyme, N-terminal ABBFA_01487 PF00391 PEP-utilising enzyme, mobile domain ABBFA_01492 PF05525 Branched-chain amino acid transport protein ABBFA_01493 PF00557 Metallopeptidase family M24 ABBFA_01494 PF03466 LysR substrate binding domain ABBFA_01494 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01496 PF00462 Glutaredoxin ABBFA_01497 PF00202 Aminotransferase class-III ABBFA_01498 PF00571 CBS domain ABBFA_01498 PF00478 IMP dehydrogenase / GMP reductase domain ABBFA_01503 PF00448 SRP54-type protein, GTPase domain ABBFA_01503 PF02881 SRP54-type protein, helical bundle domain ABBFA_01505 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ABBFA_01507 PF08173 Membrane bound YbgT-like protein ABBFA_01508 PF02322 Cytochrome bd terminal oxidase subunit II ABBFA_01509 PF01654 Cytochrome bd terminal oxidase subunit I ABBFA_01511 PF07290 Protein of unknown function (DUF1449) ABBFA_01513 PF00294 pfkB family carbohydrate kinase ABBFA_01514 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01514 PF00593 TonB dependent receptor ABBFA_01515 PF05193 Peptidase M16 inactive domain ABBFA_01515 PF00675 Insulinase (Peptidase family M16) ABBFA_01515 PF08367 Peptidase M16C associated ABBFA_01516 PF02253 Phospholipase A1 ABBFA_01517 PF02386 Cation transport protein ABBFA_01518 PF02080 TrkA-C domain ABBFA_01518 PF02254 TrkA-N domain ABBFA_01519 PF00585 C-terminal regulatory domain of Threonine dehydratase ABBFA_01519 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_01520 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ABBFA_01523 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABBFA_01523 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABBFA_01525 PF02617 ATP-dependent Clp protease adaptor protein ClpS ABBFA_01526 PF17871 AAA lid domain ABBFA_01526 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_01526 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_01526 PF02861 Clp amino terminal domain, pathogenicity island component ABBFA_01526 PF07724 AAA domain (Cdc48 subfamily) ABBFA_01527 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ABBFA_01528 PF00793 DAHP synthetase I family ABBFA_01531 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01531 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_01537 PF00117 Glutamine amidotransferase class-I ABBFA_01537 PF06418 CTP synthase N-terminus ABBFA_01538 PF00793 DAHP synthetase I family ABBFA_01539 PF00113 Enolase, C-terminal TIM barrel domain ABBFA_01539 PF03952 Enolase, N-terminal domain ABBFA_01540 PF04239 Protein of unknown function (DUF421) ABBFA_01541 PF04977 Septum formation initiator ABBFA_01542 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ABBFA_01543 PF01144 Coenzyme A transferase ABBFA_01544 PF01144 Coenzyme A transferase ABBFA_01545 PF02803 Thiolase, C-terminal domain ABBFA_01545 PF00108 Thiolase, N-terminal domain ABBFA_01546 PF10397 Adenylosuccinate lyase C-terminus ABBFA_01546 PF00206 Lyase ABBFA_01547 PF00561 alpha/beta hydrolase fold ABBFA_01548 PF07690 Major Facilitator Superfamily ABBFA_01549 PF02627 Carboxymuconolactone decarboxylase family ABBFA_01550 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal ABBFA_01550 PF00775 Dioxygenase ABBFA_01551 PF00775 Dioxygenase ABBFA_01552 PF01487 Type I 3-dehydroquinase ABBFA_01553 PF05048 Periplasmic copper-binding protein (NosD) ABBFA_01554 PF04966 Carbohydrate-selective porin, OprB family ABBFA_01555 PF01011 PQQ enzyme repeat ABBFA_01555 PF13360 PQQ-like domain ABBFA_01557 PF04143 Sulphur transport ABBFA_01559 PF00753 Metallo-beta-lactamase superfamily ABBFA_01560 PF01614 Bacterial transcriptional regulator ABBFA_01560 PF09339 IclR helix-turn-helix domain ABBFA_01561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01561 PF03466 LysR substrate binding domain ABBFA_01562 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_01562 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01562 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01565 PF00106 short chain dehydrogenase ABBFA_01567 PF07690 Major Facilitator Superfamily ABBFA_01569 PF01425 Amidase ABBFA_01570 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01573 PF00355 Rieske [2Fe-2S] domain ABBFA_01573 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_01576 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_01576 PF00175 Oxidoreductase NAD-binding domain ABBFA_01577 PF01613 Flavin reductase like domain ABBFA_01578 PF02311 AraC-like ligand binding domain ABBFA_01578 PF12833 Helix-turn-helix domain ABBFA_01579 PF02728 Copper amine oxidase, N3 domain ABBFA_01579 PF01179 Copper amine oxidase, enzyme domain ABBFA_01579 PF07833 Copper amine oxidase N-terminal domain ABBFA_01579 PF02727 Copper amine oxidase, N2 domain ABBFA_01581 PF00171 Aldehyde dehydrogenase family ABBFA_01582 PF01804 Penicillin amidase ABBFA_01583 PF12146 Serine aminopeptidase, S33 ABBFA_01584 PF02803 Thiolase, C-terminal domain ABBFA_01584 PF00108 Thiolase, N-terminal domain ABBFA_01585 PF01144 Coenzyme A transferase ABBFA_01586 PF01144 Coenzyme A transferase ABBFA_01587 PF00775 Dioxygenase ABBFA_01587 PF04444 Catechol dioxygenase N terminus ABBFA_01588 PF02426 Muconolactone delta-isomerase ABBFA_01589 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ABBFA_01589 PF13378 Enolase C-terminal domain-like ABBFA_01590 PF03466 LysR substrate binding domain ABBFA_01590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01592 PF00392 Bacterial regulatory proteins, gntR family ABBFA_01592 PF07729 FCD domain ABBFA_01593 PF00920 Dehydratase family ABBFA_01594 PF07690 Major Facilitator Superfamily ABBFA_01596 PF00171 Aldehyde dehydrogenase family ABBFA_01598 PF00561 alpha/beta hydrolase fold ABBFA_01599 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01599 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_01600 PF00106 short chain dehydrogenase ABBFA_01602 PF00376 MerR family regulatory protein ABBFA_01602 PF09278 MerR, DNA binding ABBFA_01604 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01606 PF12706 Beta-lactamase superfamily domain ABBFA_01607 PF00440 Bacterial regulatory proteins, tetR family ABBFA_01607 PF08359 YsiA-like protein, C-terminal region ABBFA_01608 PF12833 Helix-turn-helix domain ABBFA_01608 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_01610 PF06314 Acetoacetate decarboxylase (ADC) ABBFA_01612 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_01614 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_01617 PF00857 Isochorismatase family ABBFA_01618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01618 PF03466 LysR substrate binding domain ABBFA_01619 PF07995 Glucose / Sorbosone dehydrogenase ABBFA_01620 PF02254 TrkA-N domain ABBFA_01620 PF00999 Sodium/hydrogen exchanger family ABBFA_01622 PF01546 Peptidase family M20/M25/M40 ABBFA_01622 PF07687 Peptidase dimerisation domain ABBFA_01631 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) ABBFA_01632 PF07690 Major Facilitator Superfamily ABBFA_01633 PF04909 Amidohydrolase ABBFA_01636 PF08450 SMP-30/Gluconolactonase/LRE-like region ABBFA_01638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01638 PF03466 LysR substrate binding domain ABBFA_01641 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_01641 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_01644 PF00171 Aldehyde dehydrogenase family ABBFA_01645 PF00920 Dehydratase family ABBFA_01647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01647 PF03466 LysR substrate binding domain ABBFA_01648 PF01370 NAD dependent epimerase/dehydratase family ABBFA_01649 PF07690 Major Facilitator Superfamily ABBFA_01650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABBFA_01650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABBFA_01651 PF12833 Helix-turn-helix domain ABBFA_01651 PF06719 AraC-type transcriptional regulator N-terminus ABBFA_01652 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABBFA_01652 PF14572 Phosphoribosyl synthetase-associated domain ABBFA_01653 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ABBFA_01657 PF00196 Bacterial regulatory proteins, luxR family ABBFA_01657 PF03472 Autoinducer binding domain ABBFA_01658 PF01425 Amidase ABBFA_01659 PF13533 Biotin-lipoyl like ABBFA_01660 PF07690 Major Facilitator Superfamily ABBFA_01665 PF01975 Survival protein SurE ABBFA_01667 PF04607 Region found in RelA / SpoT proteins ABBFA_01667 PF13291 ACT domain ABBFA_01667 PF02824 TGS domain ABBFA_01668 PF02151 UvrB/uvrC motif ABBFA_01668 PF17757 UvrB interaction domain ABBFA_01668 PF00271 Helicase conserved C-terminal domain ABBFA_01668 PF04851 Type III restriction enzyme, res subunit ABBFA_01668 PF12344 Ultra-violet resistance protein B ABBFA_01673 PF13673 Acetyltransferase (GNAT) domain ABBFA_01674 PF12146 Serine aminopeptidase, S33 ABBFA_01675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01675 PF03466 LysR substrate binding domain ABBFA_01678 PF12146 Serine aminopeptidase, S33 ABBFA_01679 PF12833 Helix-turn-helix domain ABBFA_01679 PF02311 AraC-like ligand binding domain ABBFA_01681 PF00672 HAMP domain ABBFA_01681 PF16527 Two-component sensor protein CpxA, periplasmic domain ABBFA_01681 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_01681 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_01682 PF00072 Response regulator receiver domain ABBFA_01682 PF00486 Transcriptional regulatory protein, C terminal ABBFA_01683 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_01683 PF00529 HlyD membrane-fusion protein of T1SS ABBFA_01684 PF00873 AcrB/AcrD/AcrF family ABBFA_01685 PF02321 Outer membrane efflux protein ABBFA_01686 PF12146 Serine aminopeptidase, S33 ABBFA_01687 PF00743 Flavin-binding monooxygenase-like ABBFA_01689 PF01266 FAD dependent oxidoreductase ABBFA_01693 PF16970 Type-1 fimbrial protein, A ABBFA_01694 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABBFA_01694 PF02753 Pili assembly chaperone PapD, C-terminal domain ABBFA_01695 PF13953 PapC C-terminal domain ABBFA_01695 PF13954 PapC N-terminal domain ABBFA_01695 PF00577 Outer membrane usher protein ABBFA_01698 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_01698 PF00107 Zinc-binding dehydrogenase ABBFA_01700 PF00199 Catalase ABBFA_01703 PF13091 PLD-like domain ABBFA_01707 PF01244 Membrane dipeptidase (Peptidase family M19) ABBFA_01708 PF04055 Radical SAM superfamily ABBFA_01708 PF13186 Iron-sulfur cluster-binding domain ABBFA_01709 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ABBFA_01710 PF03070 TENA/THI-4/PQQC family ABBFA_01711 PF12706 Beta-lactamase superfamily domain ABBFA_01712 PF13089 Polyphosphate kinase N-terminal domain ABBFA_01712 PF17941 Polyphosphate kinase C-terminal domain 1 ABBFA_01712 PF13090 Polyphosphate kinase C-terminal domain 2 ABBFA_01712 PF02503 Polyphosphate kinase middle domain ABBFA_01713 PF00149 Calcineurin-like phosphoesterase ABBFA_01715 PF00857 Isochorismatase family ABBFA_01715 PF00550 Phosphopantetheine attachment site ABBFA_01716 PF00106 short chain dehydrogenase ABBFA_01717 PF03459 TOBE domain ABBFA_01717 PF00005 ABC transporter ABBFA_01718 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01720 PF03459 TOBE domain ABBFA_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01721 PF00355 Rieske [2Fe-2S] domain ABBFA_01721 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_01722 PF00866 Ring hydroxylating beta subunit ABBFA_01723 PF00175 Oxidoreductase NAD-binding domain ABBFA_01723 PF00970 Oxidoreductase FAD-binding domain ABBFA_01723 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_01724 PF12833 Helix-turn-helix domain ABBFA_01724 PF14525 AraC-binding-like domain ABBFA_01726 PF01613 Flavin reductase like domain ABBFA_01729 PF01738 Dienelactone hydrolase family ABBFA_01730 PF07690 Major Facilitator Superfamily ABBFA_01731 PF12833 Helix-turn-helix domain ABBFA_01731 PF06719 AraC-type transcriptional regulator N-terminus ABBFA_01735 PF03466 LysR substrate binding domain ABBFA_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01736 PF01144 Coenzyme A transferase ABBFA_01737 PF01144 Coenzyme A transferase ABBFA_01738 PF02667 Short chain fatty acid transporter ABBFA_01739 PF02803 Thiolase, C-terminal domain ABBFA_01739 PF00108 Thiolase, N-terminal domain ABBFA_01740 PF03466 LysR substrate binding domain ABBFA_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01741 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01741 PF03466 LysR substrate binding domain ABBFA_01744 PF00206 Lyase ABBFA_01744 PF10415 Fumarase C C-terminus ABBFA_01745 PF00593 TonB dependent receptor ABBFA_01745 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01746 PF00083 Sugar (and other) transporter ABBFA_01749 PF00005 ABC transporter ABBFA_01750 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01751 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABBFA_01756 PF02525 Flavodoxin-like fold ABBFA_01757 PF01638 HxlR-like helix-turn-helix ABBFA_01758 PF12833 Helix-turn-helix domain ABBFA_01758 PF06445 GyrI-like small molecule binding domain ABBFA_01761 PF01925 Sulfite exporter TauE/SafE ABBFA_01762 PF00753 Metallo-beta-lactamase superfamily ABBFA_01762 PF04273 Putative phosphatase (DUF442) ABBFA_01763 PF00753 Metallo-beta-lactamase superfamily ABBFA_01763 PF04273 Putative phosphatase (DUF442) ABBFA_01764 PF00158 Sigma-54 interaction domain ABBFA_01764 PF02954 Bacterial regulatory protein, Fis family ABBFA_01764 PF00072 Response regulator receiver domain ABBFA_01765 PF01062 Bestrophin, RFP-TM, chloride channel ABBFA_01766 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_01766 PF00107 Zinc-binding dehydrogenase ABBFA_01767 PF00106 short chain dehydrogenase ABBFA_01768 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ABBFA_01768 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_01769 PF00364 Biotin-requiring enzyme ABBFA_01769 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ABBFA_01769 PF02817 e3 binding domain ABBFA_01770 PF02779 Transketolase, pyrimidine binding domain ABBFA_01770 PF02780 Transketolase, C-terminal domain ABBFA_01771 PF00676 Dehydrogenase E1 component ABBFA_01772 PF04055 Radical SAM superfamily ABBFA_01775 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_01775 PF08448 PAS fold ABBFA_01776 PF01264 Chorismate synthase ABBFA_01777 PF05175 Methyltransferase small domain ABBFA_01778 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_01780 PF17862 AAA+ lid domain ABBFA_01780 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_01780 PF01434 Peptidase family M41 ABBFA_01782 PF05166 YcgL domain ABBFA_01786 PF00570 HRDC domain ABBFA_01786 PF01612 3'-5' exonuclease ABBFA_01787 PF02132 RecR protein ABBFA_01787 PF13662 Toprim domain ABBFA_01788 PF02575 YbaB/EbfC DNA-binding family ABBFA_01790 PF01053 Cys/Met metabolism PLP-dependent enzyme ABBFA_01791 PF00561 alpha/beta hydrolase fold ABBFA_01792 PF08241 Methyltransferase domain ABBFA_01798 PF01230 HIT domain ABBFA_01803 PF02684 Lipid-A-disaccharide synthetase ABBFA_01804 PF00593 TonB dependent receptor ABBFA_01804 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01808 PF01925 Sulfite exporter TauE/SafE ABBFA_01809 PF00793 DAHP synthetase I family ABBFA_01810 PF02654 Cobalamin-5-phosphate synthase ABBFA_01812 PF00300 Histidine phosphatase superfamily (branch 1) ABBFA_01813 PF02277 Phosphoribosyltransferase ABBFA_01814 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ABBFA_01816 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_01821 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01821 PF00593 TonB dependent receptor ABBFA_01822 PF03737 Aldolase/RraA ABBFA_01824 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_01824 PF04183 IucA / IucC family ABBFA_01825 PF04183 IucA / IucC family ABBFA_01825 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_01826 PF07690 Major Facilitator Superfamily ABBFA_01827 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) ABBFA_01828 PF06276 Ferric iron reductase FhuF-like transporter ABBFA_01828 PF04183 IucA / IucC family ABBFA_01829 PF04073 Aminoacyl-tRNA editing domain ABBFA_01831 PF03109 ABC1 family ABBFA_01832 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_01832 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01832 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01833 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_01833 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01833 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01834 PF00487 Fatty acid desaturase ABBFA_01835 PF12852 Cupin ABBFA_01835 PF12833 Helix-turn-helix domain ABBFA_01836 PF09312 SurA N-terminal domain ABBFA_01836 PF00639 PPIC-type PPIASE domain ABBFA_01837 PF00216 Bacterial DNA-binding protein ABBFA_01840 PF02082 Transcriptional regulator ABBFA_01841 PF00266 Aminotransferase class-V ABBFA_01842 PF01592 NifU-like N terminal domain ABBFA_01843 PF01521 Iron-sulphur cluster biosynthesis ABBFA_01844 PF00226 DnaJ domain ABBFA_01844 PF07743 HSCB C-terminal oligomerisation domain ABBFA_01845 PF00012 Hsp70 protein ABBFA_01846 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_01847 PF00211 Adenylate and Guanylate cyclase catalytic domain ABBFA_01849 PF02559 CarD-like/TRCF domain ABBFA_01849 PF03461 TRCF domain ABBFA_01849 PF17757 UvrB interaction domain ABBFA_01849 PF00270 DEAD/DEAH box helicase ABBFA_01849 PF00271 Helicase conserved C-terminal domain ABBFA_01853 PF03737 Aldolase/RraA ABBFA_01854 PF13460 NAD(P)H-binding ABBFA_01855 PF01649 Ribosomal protein S20 ABBFA_01857 PF00459 Inositol monophosphatase family ABBFA_01860 PF00005 ABC transporter ABBFA_01860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABBFA_01861 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01862 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01863 PF01432 Peptidase family M3 ABBFA_01867 PF00593 TonB dependent receptor ABBFA_01867 PF07715 TonB-dependent Receptor Plug Domain ABBFA_01868 PF03544 Gram-negative bacterial TonB protein C-terminal ABBFA_01869 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_01870 PF02472 Biopolymer transport protein ExbD/TolR ABBFA_01871 PF02472 Biopolymer transport protein ExbD/TolR ABBFA_01872 PF01274 Malate synthase ABBFA_01873 PF03969 AFG1-like ATPase ABBFA_01875 PF00743 Flavin-binding monooxygenase-like ABBFA_01877 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ABBFA_01879 PF00216 Bacterial DNA-binding protein ABBFA_01880 PF00575 S1 RNA binding domain ABBFA_01881 PF02224 Cytidylate kinase ABBFA_01883 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABBFA_01885 PF03167 Uracil DNA glycosylase superfamily ABBFA_01887 PF03934 Type II secretion system (T2SS), protein K ABBFA_01888 PF07963 Prokaryotic N-terminal methylation motif ABBFA_01888 PF11612 Type II secretion system (T2SS), protein J ABBFA_01889 PF02501 Type II secretion system (T2SS), protein I ABBFA_01889 PF07963 Prokaryotic N-terminal methylation motif ABBFA_01892 PF01026 TatD related DNase ABBFA_01894 PF09115 DNA polymerase III, delta subunit, C terminal ABBFA_01895 PF02348 Cytidylyltransferase ABBFA_01896 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ABBFA_01897 PF00005 ABC transporter ABBFA_01897 PF00664 ABC transporter transmembrane region ABBFA_01899 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_01900 PF02195 ParB-like nuclease domain ABBFA_01900 PF17762 HTH domain found in ParB protein ABBFA_01901 PF13614 AAA domain ABBFA_01902 PF02527 rRNA small subunit methyltransferase G ABBFA_01903 PF00483 Nucleotidyl transferase ABBFA_01904 PF01636 Phosphotransferase enzyme family ABBFA_01905 PF03968 OstA-like protein ABBFA_01905 PF04453 LPS transport system D ABBFA_01906 PF09312 SurA N-terminal domain ABBFA_01906 PF00639 PPIC-type PPIASE domain ABBFA_01907 PF01116 Fructose-bisphosphate aldolase class-II ABBFA_01909 PF00162 Phosphoglycerate kinase ABBFA_01911 PF02545 Maf-like protein ABBFA_01912 PF08007 Cupin superfamily protein ABBFA_01915 PF00375 Sodium:dicarboxylate symporter family ABBFA_01916 PF06912 Protein of unknown function (DUF1275) ABBFA_01917 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) ABBFA_01918 PF00664 ABC transporter transmembrane region ABBFA_01918 PF00005 ABC transporter ABBFA_01920 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_01920 PF12833 Helix-turn-helix domain ABBFA_01921 PF01597 Glycine cleavage H-protein ABBFA_01922 PF02146 Sir2 family ABBFA_01923 PF00474 Sodium:solute symporter family ABBFA_01924 PF01037 Lrp/AsnC ligand binding domain ABBFA_01925 PF14850 DNA-binding domain of Proline dehydrogenase ABBFA_01925 PF00171 Aldehyde dehydrogenase family ABBFA_01925 PF01619 Proline dehydrogenase ABBFA_01925 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ABBFA_01926 PF04229 GrpB protein ABBFA_01927 PF05958 tRNA (Uracil-5-)-methyltransferase ABBFA_01929 PF09992 Phosphodiester glycosidase ABBFA_01931 PF04264 YceI-like domain ABBFA_01933 PF02780 Transketolase, C-terminal domain ABBFA_01933 PF02779 Transketolase, pyrimidine binding domain ABBFA_01933 PF00456 Transketolase, thiamine diphosphate binding domain ABBFA_01934 PF02773 S-adenosylmethionine synthetase, C-terminal domain ABBFA_01934 PF00438 S-adenosylmethionine synthetase, N-terminal domain ABBFA_01934 PF02772 S-adenosylmethionine synthetase, central domain ABBFA_01938 PF00905 Penicillin binding protein transpeptidase domain ABBFA_01941 PF02075 Crossover junction endodeoxyribonuclease RuvC ABBFA_01942 PF03853 YjeF-related protein N-terminus ABBFA_01942 PF01256 Carbohydrate kinase ABBFA_01943 PF08331 Domain of unknown function (DUF1730) ABBFA_01944 PF06968 Biotin and Thiamin Synthesis associated domain ABBFA_01944 PF04055 Radical SAM superfamily ABBFA_01947 PF16970 Type-1 fimbrial protein, A ABBFA_01948 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ABBFA_01948 PF02753 Pili assembly chaperone PapD, C-terminal domain ABBFA_01949 PF13954 PapC N-terminal domain ABBFA_01949 PF13953 PapC C-terminal domain ABBFA_01949 PF00577 Outer membrane usher protein ABBFA_01953 PF00892 EamA-like transporter family ABBFA_01955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABBFA_01957 PF03466 LysR substrate binding domain ABBFA_01957 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_01962 PF00440 Bacterial regulatory proteins, tetR family ABBFA_01964 PF01709 Transcriptional regulator ABBFA_01965 PF01037 Lrp/AsnC ligand binding domain ABBFA_01967 PF00005 ABC transporter ABBFA_01968 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01969 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01972 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_01972 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_01974 PF00296 Luciferase-like monooxygenase ABBFA_01975 PF03180 NLPA lipoprotein ABBFA_01976 PF03180 NLPA lipoprotein ABBFA_01977 PF00005 ABC transporter ABBFA_01977 PF09383 NIL domain ABBFA_01978 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_01979 PF06071 Protein of unknown function (DUF933) ABBFA_01979 PF01926 50S ribosome-binding GTPase ABBFA_01984 PF03591 AzlC protein ABBFA_01985 PF05437 Branched-chain amino acid transport protein (AzlD) ABBFA_01987 PF02222 ATP-grasp domain ABBFA_01988 PF08335 GlnD PII-uridylyltransferase ABBFA_01988 PF01966 HD domain ABBFA_01988 PF01909 Nucleotidyltransferase domain ABBFA_01989 PF00155 Aminotransferase class I and II ABBFA_01991 PF12852 Cupin ABBFA_01991 PF12833 Helix-turn-helix domain ABBFA_01992 PF00255 Glutathione peroxidase ABBFA_01993 PF01641 SelR domain ABBFA_01994 PF00155 Aminotransferase class I and II ABBFA_01995 PF00375 Sodium:dicarboxylate symporter family ABBFA_01996 PF00710 Asparaginase, N-terminal ABBFA_01996 PF17763 Glutaminase/Asparaginase C-terminal domain ABBFA_01997 PF02811 PHP domain ABBFA_01997 PF01336 OB-fold nucleic acid binding domain ABBFA_01997 PF14579 Helix-hairpin-helix motif ABBFA_01997 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ABBFA_01997 PF07733 Bacterial DNA polymerase III alpha NTPase domain ABBFA_01998 PF00588 SpoU rRNA Methylase family ABBFA_01999 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_02002 PF13192 Thioredoxin domain ABBFA_02002 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02005 PF03466 LysR substrate binding domain ABBFA_02006 PF01758 Sodium Bile acid symporter family ABBFA_02007 PF01022 Bacterial regulatory protein, arsR family ABBFA_02008 PF03960 ArsC family ABBFA_02010 PF13382 Adenine deaminase C-terminal domain ABBFA_02010 PF01979 Amidohydrolase family ABBFA_02012 PF03466 LysR substrate binding domain ABBFA_02012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02014 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABBFA_02015 PF01177 Asp/Glu/Hydantoin racemase ABBFA_02016 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ABBFA_02017 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_02018 PF00005 ABC transporter ABBFA_02019 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ABBFA_02021 PF00083 Sugar (and other) transporter ABBFA_02022 PF00296 Luciferase-like monooxygenase ABBFA_02025 PF01654 Cytochrome bd terminal oxidase subunit I ABBFA_02026 PF02322 Cytochrome bd terminal oxidase subunit II ABBFA_02028 PF00155 Aminotransferase class I and II ABBFA_02028 PF00392 Bacterial regulatory proteins, gntR family ABBFA_02029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02029 PF03466 LysR substrate binding domain ABBFA_02032 PF00698 Acyl transferase domain ABBFA_02033 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG ABBFA_02035 PF01039 Carboxyl transferase domain ABBFA_02036 PF06857 Malonate decarboxylase delta subunit (MdcD) ABBFA_02037 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ABBFA_02038 PF16957 Malonate decarboxylase, alpha subunit, transporter ABBFA_02039 PF07690 Major Facilitator Superfamily ABBFA_02042 PF00392 Bacterial regulatory proteins, gntR family ABBFA_02043 PF04172 LrgB-like family ABBFA_02044 PF03788 LrgA family ABBFA_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02045 PF03466 LysR substrate binding domain ABBFA_02046 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_02046 PF14834 Glutathione S-transferase, C-terminal domain ABBFA_02047 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_02048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02048 PF03466 LysR substrate binding domain ABBFA_02050 PF00581 Rhodanese-like domain ABBFA_02051 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_02053 PF00266 Aminotransferase class-V ABBFA_02054 PF01810 LysE type translocator ABBFA_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02055 PF03466 LysR substrate binding domain ABBFA_02056 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_02057 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_02058 PF00005 ABC transporter ABBFA_02059 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_02060 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_02062 PF00072 Response regulator receiver domain ABBFA_02063 PF09308 LuxQ, periplasmic ABBFA_02063 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_02063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_02063 PF00072 Response regulator receiver domain ABBFA_02065 PF01037 Lrp/AsnC ligand binding domain ABBFA_02065 PF13404 AsnC-type helix-turn-helix domain ABBFA_02067 PF00717 Peptidase S24-like ABBFA_02072 PF00199 Catalase ABBFA_02072 PF06628 Catalase-related immune-responsive ABBFA_02072 PF18011 C-terminal domain found in long catalases ABBFA_02074 PF02464 Competence-damaged protein ABBFA_02074 PF18146 Damage-inducible protein CinA KH domain ABBFA_02074 PF00994 Probable molybdopterin binding domain ABBFA_02082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02082 PF03466 LysR substrate binding domain ABBFA_02086 PF13193 AMP-binding enzyme C-terminal domain ABBFA_02086 PF00501 AMP-binding enzyme ABBFA_02087 PF00440 Bacterial regulatory proteins, tetR family ABBFA_02088 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_02088 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_02088 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_02089 PF01039 Carboxyl transferase domain ABBFA_02090 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02091 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_02091 PF02785 Biotin carboxylase C-terminal domain ABBFA_02091 PF00364 Biotin-requiring enzyme ABBFA_02091 PF00289 Biotin carboxylase, N-terminal domain ABBFA_02092 PF00682 HMGL-like ABBFA_02093 PF03466 LysR substrate binding domain ABBFA_02093 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02096 PF12806 Acetyl-CoA dehydrogenase C-terminal like ABBFA_02096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_02096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_02096 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_02098 PF07690 Major Facilitator Superfamily ABBFA_02100 PF01144 Coenzyme A transferase ABBFA_02101 PF01144 Coenzyme A transferase ABBFA_02102 PF07690 Major Facilitator Superfamily ABBFA_02103 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_02103 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_02103 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_02104 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02106 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_02106 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_02106 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABBFA_02107 PF02803 Thiolase, C-terminal domain ABBFA_02107 PF00108 Thiolase, N-terminal domain ABBFA_02108 PF09339 IclR helix-turn-helix domain ABBFA_02109 PF07690 Major Facilitator Superfamily ABBFA_02110 PF03060 Nitronate monooxygenase ABBFA_02111 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02112 PF09339 IclR helix-turn-helix domain ABBFA_02113 PF02515 CoA-transferase family III ABBFA_02114 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_02114 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_02114 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_02115 PF07690 Major Facilitator Superfamily ABBFA_02116 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_02117 PF00266 Aminotransferase class-V ABBFA_02118 PF01266 FAD dependent oxidoreductase ABBFA_02119 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_02120 PF08402 TOBE domain ABBFA_02120 PF00005 ABC transporter ABBFA_02122 PF00392 Bacterial regulatory proteins, gntR family ABBFA_02122 PF07702 UTRA domain ABBFA_02123 PF01494 FAD binding domain ABBFA_02124 PF01614 Bacterial transcriptional regulator ABBFA_02124 PF09339 IclR helix-turn-helix domain ABBFA_02125 PF02525 Flavodoxin-like fold ABBFA_02126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02126 PF03466 LysR substrate binding domain ABBFA_02127 PF02627 Carboxymuconolactone decarboxylase family ABBFA_02128 PF00171 Aldehyde dehydrogenase family ABBFA_02130 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ABBFA_02131 PF00171 Aldehyde dehydrogenase family ABBFA_02132 PF00296 Luciferase-like monooxygenase ABBFA_02133 PF01613 Flavin reductase like domain ABBFA_02134 PF12697 Alpha/beta hydrolase family ABBFA_02138 PF01292 Prokaryotic cytochrome b561 ABBFA_02139 PF00199 Catalase ABBFA_02140 PF07690 Major Facilitator Superfamily ABBFA_02141 PF00682 HMGL-like ABBFA_02142 PF02515 CoA-transferase family III ABBFA_02148 PF00313 'Cold-shock' DNA-binding domain ABBFA_02154 PF13361 UvrD-like helicase C-terminal domain ABBFA_02154 PF00580 UvrD/REP helicase N-terminal domain ABBFA_02155 PF02463 RecF/RecN/SMC N terminal domain ABBFA_02156 PF03061 Thioesterase superfamily ABBFA_02157 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_02158 PF08223 PaaX-like protein C-terminal domain ABBFA_02158 PF07848 PaaX-like protein ABBFA_02159 PF00501 AMP-binding enzyme ABBFA_02159 PF14535 AMP-binding enzyme C-terminal domain ABBFA_02160 PF00108 Thiolase, N-terminal domain ABBFA_02160 PF02803 Thiolase, C-terminal domain ABBFA_02161 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_02161 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ABBFA_02161 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_02162 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02163 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02164 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_02164 PF00175 Oxidoreductase NAD-binding domain ABBFA_02164 PF00970 Oxidoreductase FAD-binding domain ABBFA_02165 PF01883 Iron-sulfur cluster assembly protein ABBFA_02166 PF05138 Phenylacetic acid catabolic protein ABBFA_02167 PF06243 Phenylacetic acid degradation B ABBFA_02168 PF05138 Phenylacetic acid catabolic protein ABBFA_02169 PF01575 MaoC like domain ABBFA_02169 PF00171 Aldehyde dehydrogenase family ABBFA_02170 PF03315 Serine dehydratase beta chain ABBFA_02170 PF03313 Serine dehydratase alpha chain ABBFA_02171 PF13520 Amino acid permease ABBFA_02172 PF00171 Aldehyde dehydrogenase family ABBFA_02173 PF00083 Sugar (and other) transporter ABBFA_02175 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02175 PF04324 BFD-like [2Fe-2S] binding domain ABBFA_02177 PF01266 FAD dependent oxidoreductase ABBFA_02178 PF05544 Proline racemase ABBFA_02179 PF00392 Bacterial regulatory proteins, gntR family ABBFA_02181 PF00701 Dihydrodipicolinate synthetase family ABBFA_02184 PF00376 MerR family regulatory protein ABBFA_02184 PF09278 MerR, DNA binding ABBFA_02186 PF02677 Epoxyqueuosine reductase QueH ABBFA_02189 PF07690 Major Facilitator Superfamily ABBFA_02190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABBFA_02192 PF03466 LysR substrate binding domain ABBFA_02192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02198 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_02198 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_02198 PF17871 AAA lid domain ABBFA_02198 PF07724 AAA domain (Cdc48 subfamily) ABBFA_02200 PF00691 OmpA family ABBFA_02200 PF01389 OmpA-like transmembrane domain ABBFA_02213 PF00005 ABC transporter ABBFA_02214 PF00497 Bacterial extracellular solute-binding proteins, family 3 ABBFA_02215 PF01425 Amidase ABBFA_02216 PF01402 Ribbon-helix-helix protein, copG family ABBFA_02216 PF08753 NikR C terminal nickel binding domain ABBFA_02218 PF01638 HxlR-like helix-turn-helix ABBFA_02219 PF02525 Flavodoxin-like fold ABBFA_02220 PF00289 Biotin carboxylase, N-terminal domain ABBFA_02220 PF02785 Biotin carboxylase C-terminal domain ABBFA_02220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_02223 PF13823 Alcohol dehydrogenase GroES-associated ABBFA_02223 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_02223 PF00107 Zinc-binding dehydrogenase ABBFA_02225 PF00440 Bacterial regulatory proteins, tetR family ABBFA_02230 PF00654 Voltage gated chloride channel ABBFA_02231 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ABBFA_02231 PF00364 Biotin-requiring enzyme ABBFA_02231 PF00289 Biotin carboxylase, N-terminal domain ABBFA_02231 PF02785 Biotin carboxylase C-terminal domain ABBFA_02233 PF07286 Protein of unknown function (DUF1445) ABBFA_02234 PF03746 LamB/YcsF family ABBFA_02235 PF01566 Natural resistance-associated macrophage protein ABBFA_02236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02236 PF03466 LysR substrate binding domain ABBFA_02240 PF05593 RHS Repeat ABBFA_02240 PF03527 RHS protein ABBFA_02243 PF14220 Domain of unknown function (DUF4329) ABBFA_02243 PF03527 RHS protein ABBFA_02243 PF05593 RHS Repeat ABBFA_02244 PF16671 Actin cross-linking domain ABBFA_02244 PF04717 Type VI secretion system, phage-baseplate injector ABBFA_02248 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_02248 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_02252 PF07690 Major Facilitator Superfamily ABBFA_02254 PF03279 Bacterial lipid A biosynthesis acyltransferase ABBFA_02255 PF00563 EAL domain ABBFA_02255 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_02255 PF03707 Bacterial signalling protein N terminal repeat ABBFA_02257 PF00892 EamA-like transporter family ABBFA_02258 PF01037 Lrp/AsnC ligand binding domain ABBFA_02259 PF05190 MutS family domain IV ABBFA_02259 PF01624 MutS domain I ABBFA_02259 PF05188 MutS domain II ABBFA_02259 PF05192 MutS domain III ABBFA_02259 PF00488 MutS domain V ABBFA_02261 PF11953 Domain of unknown function (DUF3470) ABBFA_02261 PF00037 4Fe-4S binding domain ABBFA_02263 PF01596 O-methyltransferase ABBFA_02265 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_02266 PF01205 Uncharacterized protein family UPF0029 ABBFA_02268 PF00005 ABC transporter ABBFA_02268 PF00664 ABC transporter transmembrane region ABBFA_02268 PF03412 Peptidase C39 family ABBFA_02269 PF02321 Outer membrane efflux protein ABBFA_02270 PF00005 ABC transporter ABBFA_02270 PF12399 Branched-chain amino acid ATP-binding cassette transporter ABBFA_02271 PF03968 OstA-like protein ABBFA_02274 PF01380 SIS domain ABBFA_02274 PF00571 CBS domain ABBFA_02275 PF09190 DALR domain ABBFA_02275 PF01406 tRNA synthetases class I (C) catalytic domain ABBFA_02278 PF00589 Phage integrase family ABBFA_02286 PF13229 Right handed beta helix region ABBFA_02286 PF12708 Pectate lyase superfamily protein ABBFA_02290 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) ABBFA_02294 PF06381 Protein of unknown function (DUF1073) ABBFA_02307 PF01638 HxlR-like helix-turn-helix ABBFA_02308 PF07690 Major Facilitator Superfamily ABBFA_02313 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABBFA_02313 PF03807 NADP oxidoreductase coenzyme F420-dependent ABBFA_02315 PF00313 'Cold-shock' DNA-binding domain ABBFA_02316 PF01810 LysE type translocator ABBFA_02322 PF13742 OB-fold nucleic acid binding domain ABBFA_02322 PF02601 Exonuclease VII, large subunit ABBFA_02329 PF09278 MerR, DNA binding ABBFA_02329 PF00376 MerR family regulatory protein ABBFA_02330 PF00403 Heavy-metal-associated domain ABBFA_02332 PF03466 LysR substrate binding domain ABBFA_02332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02333 PF00355 Rieske [2Fe-2S] domain ABBFA_02333 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_02334 PF00866 Ring hydroxylating beta subunit ABBFA_02335 PF00175 Oxidoreductase NAD-binding domain ABBFA_02335 PF00970 Oxidoreductase FAD-binding domain ABBFA_02335 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_02336 PF00106 short chain dehydrogenase ABBFA_02337 PF03594 Benzoate membrane transport protein ABBFA_02338 PF07690 Major Facilitator Superfamily ABBFA_02340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ABBFA_02340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ABBFA_02341 PF11898 Domain of unknown function (DUF3418) ABBFA_02341 PF04408 Helicase associated domain (HA2) ABBFA_02341 PF00271 Helicase conserved C-terminal domain ABBFA_02341 PF00270 DEAD/DEAH box helicase ABBFA_02341 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ABBFA_02342 PF00578 AhpC/TSA family ABBFA_02342 PF10417 C-terminal domain of 1-Cys peroxiredoxin ABBFA_02346 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02346 PF13192 Thioredoxin domain ABBFA_02348 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_02348 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_02350 PF02390 Putative methyltransferase ABBFA_02351 PF13417 Glutathione S-transferase, N-terminal domain ABBFA_02351 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_02353 PF00691 OmpA family ABBFA_02353 PF13488 Glycine zipper ABBFA_02354 PF01979 Amidohydrolase family ABBFA_02355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ABBFA_02355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ABBFA_02357 PF02926 THUMP domain ABBFA_02357 PF01170 Putative RNA methylase family UPF0020 ABBFA_02357 PF10672 S-adenosylmethionine-dependent methyltransferase ABBFA_02360 PF17871 AAA lid domain ABBFA_02360 PF07724 AAA domain (Cdc48 subfamily) ABBFA_02360 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_02360 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_02360 PF02861 Clp amino terminal domain, pathogenicity island component ABBFA_02363 PF02566 OsmC-like protein ABBFA_02364 PF00027 Cyclic nucleotide-binding domain ABBFA_02364 PF13545 Crp-like helix-turn-helix domain ABBFA_02365 PF00248 Aldo/keto reductase family ABBFA_02368 PF00709 Adenylosuccinate synthetase ABBFA_02369 PF13393 Histidyl-tRNA synthetase ABBFA_02370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ABBFA_02370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ABBFA_02371 PF02272 DHHA1 domain ABBFA_02371 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABBFA_02371 PF01411 tRNA synthetases class II (A) ABBFA_02372 PF13840 ACT domain ABBFA_02372 PF00696 Amino acid kinase family ABBFA_02372 PF01842 ACT domain ABBFA_02373 PF02599 Global regulator protein family ABBFA_02374 PF01351 Ribonuclease HII ABBFA_02376 PF01292 Prokaryotic cytochrome b561 ABBFA_02377 PF00962 Adenosine/AMP deaminase ABBFA_02378 PF00860 Permease family ABBFA_02380 PF00743 Flavin-binding monooxygenase-like ABBFA_02381 PF00106 short chain dehydrogenase ABBFA_02383 PF17954 Quercetinase C-terminal cupin domain ABBFA_02383 PF02678 Pirin ABBFA_02384 PF00440 Bacterial regulatory proteins, tetR family ABBFA_02384 PF17932 Tetracyclin repressor-like, C-terminal domain ABBFA_02386 PF00106 short chain dehydrogenase ABBFA_02387 PF00743 Flavin-binding monooxygenase-like ABBFA_02388 PF04072 Leucine carboxyl methyltransferase ABBFA_02389 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_02389 PF12833 Helix-turn-helix domain ABBFA_02390 PF00743 Flavin-binding monooxygenase-like ABBFA_02391 PF00106 short chain dehydrogenase ABBFA_02392 PF07859 alpha/beta hydrolase fold ABBFA_02393 PF05199 GMC oxidoreductase ABBFA_02394 PF03573 outer membrane porin, OprD family ABBFA_02395 PF07690 Major Facilitator Superfamily ABBFA_02396 PF00355 Rieske [2Fe-2S] domain ABBFA_02397 PF00175 Oxidoreductase NAD-binding domain ABBFA_02397 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_02400 PF07690 Major Facilitator Superfamily ABBFA_02401 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02402 PF00171 Aldehyde dehydrogenase family ABBFA_02404 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_02404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_02404 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_02405 PF03573 outer membrane porin, OprD family ABBFA_02408 PF07519 Tannase and feruloyl esterase ABBFA_02409 PF07729 FCD domain ABBFA_02409 PF00392 Bacterial regulatory proteins, gntR family ABBFA_02410 PF00171 Aldehyde dehydrogenase family ABBFA_02411 PF00701 Dihydrodipicolinate synthetase family ABBFA_02412 PF13378 Enolase C-terminal domain-like ABBFA_02413 PF07690 Major Facilitator Superfamily ABBFA_02414 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ABBFA_02414 PF08666 SAF domain ABBFA_02415 PF00892 EamA-like transporter family ABBFA_02416 PF12833 Helix-turn-helix domain ABBFA_02416 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_02417 PF00171 Aldehyde dehydrogenase family ABBFA_02421 PF00324 Amino acid permease ABBFA_02422 PF04958 Arginine N-succinyltransferase beta subunit ABBFA_02423 PF00202 Aminotransferase class-III ABBFA_02425 PF00171 Aldehyde dehydrogenase family ABBFA_02427 PF00392 Bacterial regulatory proteins, gntR family ABBFA_02427 PF07729 FCD domain ABBFA_02429 PF00324 Amino acid permease ABBFA_02430 PF01266 FAD dependent oxidoreductase ABBFA_02431 PF00324 Amino acid permease ABBFA_02439 PF05593 RHS Repeat ABBFA_02439 PF03527 RHS protein ABBFA_02440 PF04717 Type VI secretion system, phage-baseplate injector ABBFA_02440 PF16671 Actin cross-linking domain ABBFA_02443 PF03180 NLPA lipoprotein ABBFA_02445 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_02446 PF00764 Arginosuccinate synthase ABBFA_02447 PF01590 GAF domain ABBFA_02447 PF00563 EAL domain ABBFA_02447 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_02447 PF00360 Phytochrome region ABBFA_02448 PF01979 Amidohydrolase family ABBFA_02449 PF00929 Exonuclease ABBFA_02451 PF07715 TonB-dependent Receptor Plug Domain ABBFA_02451 PF00593 TonB dependent receptor ABBFA_02458 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ABBFA_02458 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02459 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ABBFA_02459 PF00005 ABC transporter ABBFA_02460 PF12911 N-terminal TM domain of oligopeptide transport permease C ABBFA_02460 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_02461 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_02462 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ABBFA_02463 PF01464 Transglycosylase SLT domain ABBFA_02463 PF01476 LysM domain ABBFA_02463 PF01464 Transglycosylase SLT domain ABBFA_02463 PF01476 LysM domain ABBFA_02464 PF00929 Exonuclease ABBFA_02466 PF00293 NUDIX domain ABBFA_02466 PF09297 NADH pyrophosphatase zinc ribbon domain ABBFA_02468 PF04972 BON domain ABBFA_02469 PF02021 Uncharacterised protein family UPF0102 ABBFA_02470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ABBFA_02472 PF03466 LysR substrate binding domain ABBFA_02472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02473 PF01810 LysE type translocator ABBFA_02475 PF13411 MerR HTH family regulatory protein ABBFA_02477 PF01494 FAD binding domain ABBFA_02478 PF01494 FAD binding domain ABBFA_02479 PF00557 Metallopeptidase family M24 ABBFA_02479 PF05195 Aminopeptidase P, N-terminal domain ABBFA_02485 PF00313 'Cold-shock' DNA-binding domain ABBFA_02500 PF08525 Opacity-associated protein A N-terminal motif ABBFA_02500 PF01476 LysM domain ABBFA_02500 PF01551 Peptidase family M23 ABBFA_02536 PF01555 DNA methylase ABBFA_02541 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_02556 PF01812 5-formyltetrahydrofolate cyclo-ligase family ABBFA_02557 PF00004 ATPase family associated with various cellular activities (AAA) ABBFA_02557 PF05362 Lon protease (S16) C-terminal proteolytic domain ABBFA_02557 PF02190 ATP-dependent protease La (LON) substrate-binding domain ABBFA_02558 PF02590 Predicted SPOUT methyltransferase ABBFA_02561 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ABBFA_02561 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ABBFA_02562 PF04060 Putative Fe-S cluster ABBFA_02563 PF10576 Iron-sulfur binding domain of endonuclease III ABBFA_02563 PF00633 Helix-hairpin-helix motif ABBFA_02563 PF00730 HhH-GPD superfamily base excision DNA repair protein ABBFA_02564 PF05191 Adenylate kinase, active site lid ABBFA_02567 PF00905 Penicillin binding protein transpeptidase domain ABBFA_02567 PF03717 Penicillin-binding Protein dimerisation domain ABBFA_02570 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABBFA_02571 PF01730 UreF ABBFA_02572 PF05194 UreE urease accessory protein, C-terminal domain ABBFA_02572 PF02814 UreE urease accessory protein, N-terminal domain ABBFA_02573 PF00449 Urease alpha-subunit, N-terminal domain ABBFA_02573 PF01979 Amidohydrolase family ABBFA_02574 PF00699 Urease beta subunit ABBFA_02575 PF00547 Urease, gamma subunit ABBFA_02576 PF01774 UreD urease accessory protein ABBFA_02579 PF00463 Isocitrate lyase family ABBFA_02580 PF03466 LysR substrate binding domain ABBFA_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02581 PF00571 CBS domain ABBFA_02581 PF03471 Transporter associated domain ABBFA_02581 PF01595 Cyclin M transmembrane N-terminal domain ABBFA_02582 PF03600 Citrate transporter ABBFA_02585 PF00009 Elongation factor Tu GTP binding domain ABBFA_02586 PF01507 Phosphoadenosine phosphosulfate reductase family ABBFA_02588 PF14052 Capsule assembly protein Wzi ABBFA_02589 PF01336 OB-fold nucleic acid binding domain ABBFA_02589 PF00152 tRNA synthetases class II (D, K and N) ABBFA_02592 PF00301 Rubredoxin ABBFA_02593 PF18113 Rubredoxin binding C-terminal domain ABBFA_02593 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02594 PF00561 alpha/beta hydrolase fold ABBFA_02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02595 PF03466 LysR substrate binding domain ABBFA_02597 PF17941 Polyphosphate kinase C-terminal domain 1 ABBFA_02597 PF02503 Polyphosphate kinase middle domain ABBFA_02597 PF13090 Polyphosphate kinase C-terminal domain 2 ABBFA_02597 PF13089 Polyphosphate kinase N-terminal domain ABBFA_02598 PF00912 Transglycosylase ABBFA_02599 PF01694 Rhomboid family ABBFA_02601 PF00005 ABC transporter ABBFA_02602 PF13472 GDSL-like Lipase/Acylhydrolase family ABBFA_02603 PF00484 Carbonic anhydrase ABBFA_02604 PF00561 alpha/beta hydrolase fold ABBFA_02606 PF07715 TonB-dependent Receptor Plug Domain ABBFA_02606 PF00593 TonB dependent receptor ABBFA_02607 PF01106 NifU-like domain ABBFA_02607 PF01521 Iron-sulphur cluster biosynthesis ABBFA_02609 PF00884 Sulfatase ABBFA_02610 PF03781 Sulfatase-modifying factor enzyme 1 ABBFA_02613 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_02614 PF01384 Phosphate transporter family ABBFA_02615 PF02574 Homocysteine S-methyltransferase ABBFA_02615 PF00809 Pterin binding enzyme ABBFA_02615 PF02965 Vitamin B12 dependent methionine synthase, activation domain ABBFA_02615 PF02607 B12 binding domain ABBFA_02615 PF02310 B12 binding domain ABBFA_02616 PF02780 Transketolase, C-terminal domain ABBFA_02616 PF02779 Transketolase, pyrimidine binding domain ABBFA_02617 PF00456 Transketolase, thiamine diphosphate binding domain ABBFA_02618 PF07690 Major Facilitator Superfamily ABBFA_02620 PF03466 LysR substrate binding domain ABBFA_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02622 PF01263 Aldose 1-epimerase ABBFA_02623 PF07690 Major Facilitator Superfamily ABBFA_02624 PF12833 Helix-turn-helix domain ABBFA_02624 PF02311 AraC-like ligand binding domain ABBFA_02625 PF04960 Glutaminase ABBFA_02626 PF01327 Polypeptide deformylase ABBFA_02628 PF07690 Major Facilitator Superfamily ABBFA_02630 PF00205 Thiamine pyrophosphate enzyme, central domain ABBFA_02630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABBFA_02630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABBFA_02631 PF00171 Aldehyde dehydrogenase family ABBFA_02632 PF03447 Homoserine dehydrogenase, NAD binding domain ABBFA_02632 PF01958 Domain of unknown function DUF108 ABBFA_02634 PF12697 Alpha/beta hydrolase family ABBFA_02636 PF07690 Major Facilitator Superfamily ABBFA_02637 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02637 PF14759 Reductase C-terminal ABBFA_02638 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABBFA_02640 PF00355 Rieske [2Fe-2S] domain ABBFA_02642 PF00355 Rieske [2Fe-2S] domain ABBFA_02643 PF01614 Bacterial transcriptional regulator ABBFA_02643 PF09339 IclR helix-turn-helix domain ABBFA_02646 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02648 PF00535 Glycosyl transferase family 2 ABBFA_02649 PF14883 Hypothetical glycosyl hydrolase family 13 ABBFA_02649 PF01522 Polysaccharide deacetylase ABBFA_02650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_02651 PF07152 YaeQ protein ABBFA_02652 PF00375 Sodium:dicarboxylate symporter family ABBFA_02653 PF02492 CobW/HypB/UreG, nucleotide-binding domain ABBFA_02653 PF07683 Cobalamin synthesis protein cobW C-terminal domain ABBFA_02655 PF03061 Thioesterase superfamily ABBFA_02657 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_02658 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_02659 PF13977 BetI-type transcriptional repressor, C-terminal ABBFA_02659 PF00440 Bacterial regulatory proteins, tetR family ABBFA_02660 PF00171 Aldehyde dehydrogenase family ABBFA_02661 PF05199 GMC oxidoreductase ABBFA_02661 PF00732 GMC oxidoreductase ABBFA_02662 PF06039 Malate:quinone oxidoreductase (Mqo) ABBFA_02664 PF02574 Homocysteine S-methyltransferase ABBFA_02665 PF13520 Amino acid permease ABBFA_02670 PF00701 Dihydrodipicolinate synthetase family ABBFA_02671 PF00083 Sugar (and other) transporter ABBFA_02676 PF01026 TatD related DNase ABBFA_02679 PF07693 KAP family P-loop domain ABBFA_02683 PF07690 Major Facilitator Superfamily ABBFA_02684 PF13533 Biotin-lipoyl like ABBFA_02685 PF03061 Thioesterase superfamily ABBFA_02686 PF00490 Delta-aminolevulinic acid dehydratase ABBFA_02687 PF01266 FAD dependent oxidoreductase ABBFA_02688 PF08338 Domain of unknown function (DUF1731) ABBFA_02688 PF01370 NAD dependent epimerase/dehydratase family ABBFA_02692 PF00149 Calcineurin-like phosphoesterase ABBFA_02692 PF12320 Type 5 capsule protein repressor C-terminal domain ABBFA_02694 PF01168 Alanine racemase, N-terminal domain ABBFA_02695 PF00437 Type II/IV secretion system protein ABBFA_02696 PF00437 Type II/IV secretion system protein ABBFA_02697 PF01475 Ferric uptake regulator family ABBFA_02698 PF04355 SmpA / OmlA family ABBFA_02699 PF03658 RnfH family Ubiquitin ABBFA_02701 PF01814 Hemerythrin HHE cation binding domain ABBFA_02702 PF13230 Glutamine amidotransferases class-II ABBFA_02704 PF00696 Amino acid kinase family ABBFA_02705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABBFA_02705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABBFA_02705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABBFA_02705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABBFA_02706 PF00692 dUTPase ABBFA_02707 PF00580 UvrD/REP helicase N-terminal domain ABBFA_02707 PF13361 UvrD-like helicase C-terminal domain ABBFA_02708 PF13488 Glycine zipper ABBFA_02708 PF00691 OmpA family ABBFA_02709 PF01553 Acyltransferase ABBFA_02711 PF03775 Septum formation inhibitor MinC, C-terminal domain ABBFA_02712 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ABBFA_02713 PF03776 Septum formation topological specificity factor MinE ABBFA_02715 PF01810 LysE type translocator ABBFA_02716 PF01580 FtsK/SpoIIIE family ABBFA_02716 PF09397 Ftsk gamma domain ABBFA_02716 PF17854 FtsK alpha domain ABBFA_02716 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ABBFA_02717 PF07992 Pyridine nucleotide-disulphide oxidoreductase ABBFA_02718 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ABBFA_02719 PF04376 Arginine-tRNA-protein transferase, N terminus ABBFA_02719 PF04377 Arginine-tRNA-protein transferase, C terminus ABBFA_02720 PF00583 Acetyltransferase (GNAT) family ABBFA_02723 PF03144 Elongation factor Tu domain 2 ABBFA_02723 PF00009 Elongation factor Tu GTP binding domain ABBFA_02723 PF03143 Elongation factor Tu C-terminal domain ABBFA_02724 PF14492 Elongation Factor G, domain II ABBFA_02724 PF03144 Elongation factor Tu domain 2 ABBFA_02724 PF00009 Elongation factor Tu GTP binding domain ABBFA_02724 PF03764 Elongation factor G, domain IV ABBFA_02724 PF00679 Elongation factor G C-terminus ABBFA_02725 PF00177 Ribosomal protein S7p/S5e ABBFA_02726 PF00164 Ribosomal protein S12/S23 ABBFA_02728 PF00109 Beta-ketoacyl synthase, N-terminal domain ABBFA_02728 PF02801 Beta-ketoacyl synthase, C-terminal domain ABBFA_02730 PF05726 Pirin C-terminal cupin domain ABBFA_02730 PF02678 Pirin ABBFA_02732 PF00795 Carbon-nitrogen hydrolase ABBFA_02732 PF02540 NAD synthase ABBFA_02735 PF00175 Oxidoreductase NAD-binding domain ABBFA_02735 PF00111 2Fe-2S iron-sulfur cluster binding domain ABBFA_02735 PF00970 Oxidoreductase FAD-binding domain ABBFA_02736 PF00171 Aldehyde dehydrogenase family ABBFA_02737 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ABBFA_02737 PF00355 Rieske [2Fe-2S] domain ABBFA_02738 PF07859 alpha/beta hydrolase fold ABBFA_02739 PF02028 BCCT, betaine/carnitine/choline family transporter ABBFA_02740 PF00180 Isocitrate/isopropylmalate dehydrogenase ABBFA_02741 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02741 PF03466 LysR substrate binding domain ABBFA_02744 PF00037 4Fe-4S binding domain ABBFA_02745 PF01467 Cytidylyltransferase-like ABBFA_02746 PF01668 SmpB protein ABBFA_02747 PF03358 NADPH-dependent FMN reductase ABBFA_02749 PF00849 RNA pseudouridylate synthase ABBFA_02749 PF01479 S4 domain ABBFA_02750 PF13525 Outer membrane lipoprotein ABBFA_02751 PF01807 CHC2 zinc finger ABBFA_02751 PF08275 DNA primase catalytic core, N-terminal domain ABBFA_02751 PF10410 DnaB-helicase binding domain of primase ABBFA_02751 PF08278 DNA primase DnaG DnaB-binding ABBFA_02752 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ABBFA_02752 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ABBFA_02752 PF01488 Shikimate / quinate 5-dehydrogenase ABBFA_02754 PF03550 Outer membrane lipoprotein LolB ABBFA_02759 PF14572 Phosphoribosyl synthetase-associated domain ABBFA_02759 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ABBFA_02760 PF01386 Ribosomal L25p family ABBFA_02761 PF01195 Peptidyl-tRNA hydrolase ABBFA_02762 PF02261 Aspartate decarboxylase ABBFA_02765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ABBFA_02767 PF08543 Phosphomethylpyrimidine kinase ABBFA_02767 PF03070 TENA/THI-4/PQQC family ABBFA_02767 PF02581 Thiamine monophosphate synthase ABBFA_02768 PF01476 LysM domain ABBFA_02768 PF04972 BON domain ABBFA_02769 PF00550 Phosphopantetheine attachment site ABBFA_02771 PF00698 Acyl transferase domain ABBFA_02772 PF01783 Ribosomal L32p protein family ABBFA_02773 PF02620 Large ribosomal RNA subunit accumulation protein YceD ABBFA_02774 PF04315 Elongation factor P hydroxylase ABBFA_02775 PF01300 Telomere recombination ABBFA_02776 PF02616 Segregation and condensation protein ScpA ABBFA_02777 PF04079 Segregation and condensation complex subunit ScpB ABBFA_02778 PF00849 RNA pseudouridylate synthase ABBFA_02778 PF01479 S4 domain ABBFA_02781 PF00155 Aminotransferase class I and II ABBFA_02782 PF00202 Aminotransferase class-III ABBFA_02782 PF06968 Biotin and Thiamin Synthesis associated domain ABBFA_02782 PF04055 Radical SAM superfamily ABBFA_02783 PF08241 Methyltransferase domain ABBFA_02783 PF12697 Alpha/beta hydrolase family ABBFA_02784 PF02358 Trehalose-phosphatase ABBFA_02785 PF00982 Glycosyltransferase family 20 ABBFA_02786 PF07690 Major Facilitator Superfamily ABBFA_02787 PF00210 Ferritin-like domain ABBFA_02788 PF12826 Helix-hairpin-helix motif ABBFA_02788 PF03120 NAD-dependent DNA ligase OB-fold domain ABBFA_02788 PF01653 NAD-dependent DNA ligase adenylation domain ABBFA_02788 PF00533 BRCA1 C Terminus (BRCT) domain ABBFA_02788 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ABBFA_02790 PF02463 RecF/RecN/SMC N terminal domain ABBFA_02790 PF06470 SMC proteins Flexible Hinge Domain ABBFA_02792 PF01925 Sulfite exporter TauE/SafE ABBFA_02794 PF03309 Type III pantothenate kinase ABBFA_02795 PF02881 SRP54-type protein, helical bundle domain ABBFA_02795 PF02978 Signal peptide binding domain ABBFA_02795 PF00448 SRP54-type protein, GTPase domain ABBFA_02797 PF01207 Dihydrouridine synthase (Dus) ABBFA_02803 PF00692 dUTPase ABBFA_02806 PF01048 Phosphorylase superfamily ABBFA_02807 PF10609 NUBPL iron-transfer P-loop NTPase ABBFA_02809 PF01588 Putative tRNA binding domain ABBFA_02809 PF09334 tRNA synthetases class I (M) ABBFA_02814 PF13533 Biotin-lipoyl like ABBFA_02815 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_02818 PF05552 Conserved TM helix ABBFA_02821 PF00970 Oxidoreductase FAD-binding domain ABBFA_02821 PF00175 Oxidoreductase NAD-binding domain ABBFA_02822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02822 PF03466 LysR substrate binding domain ABBFA_02824 PF00313 'Cold-shock' DNA-binding domain ABBFA_02826 PF00361 Proton-conducting membrane transporter ABBFA_02827 PF00361 Proton-conducting membrane transporter ABBFA_02828 PF00361 Proton-conducting membrane transporter ABBFA_02828 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABBFA_02829 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABBFA_02830 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABBFA_02831 PF12838 4Fe-4S dicluster domain ABBFA_02832 PF00146 NADH dehydrogenase ABBFA_02833 PF00384 Molybdopterin oxidoreductase ABBFA_02833 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ABBFA_02833 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ABBFA_02834 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ABBFA_02834 PF10531 SLBB domain ABBFA_02834 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ABBFA_02836 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ABBFA_02836 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ABBFA_02837 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ABBFA_02838 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABBFA_02839 PF17151 Periplasmic sensor domain ABBFA_02839 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_02841 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_02841 PF00672 HAMP domain ABBFA_02841 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_02842 PF00072 Response regulator receiver domain ABBFA_02842 PF00486 Transcriptional regulatory protein, C terminal ABBFA_02843 PF02867 Ribonucleotide reductase, barrel domain ABBFA_02843 PF03477 ATP cone domain ABBFA_02843 PF00317 Ribonucleotide reductase, all-alpha domain ABBFA_02845 PF00268 Ribonucleotide reductase, small chain ABBFA_02847 PF02567 Phenazine biosynthesis-like protein ABBFA_02853 PF16295 Tetracyclin repressor-like, C-terminal domain ABBFA_02853 PF00440 Bacterial regulatory proteins, tetR family ABBFA_02854 PF01613 Flavin reductase like domain ABBFA_02855 PF08267 Cobalamin-independent synthase, N-terminal domain ABBFA_02855 PF01717 Cobalamin-independent synthase, Catalytic domain ABBFA_02857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02857 PF03466 LysR substrate binding domain ABBFA_02858 PF01810 LysE type translocator ABBFA_02860 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ABBFA_02860 PF12833 Helix-turn-helix domain ABBFA_02861 PF01546 Peptidase family M20/M25/M40 ABBFA_02861 PF07687 Peptidase dimerisation domain ABBFA_02863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02863 PF03466 LysR substrate binding domain ABBFA_02864 PF07690 Major Facilitator Superfamily ABBFA_02866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02866 PF03466 LysR substrate binding domain ABBFA_02867 PF00890 FAD binding domain ABBFA_02867 PF14537 Cytochrome c3 ABBFA_02869 PF02515 CoA-transferase family III ABBFA_02870 PF07690 Major Facilitator Superfamily ABBFA_02871 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_02871 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_02871 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_02872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02872 PF03466 LysR substrate binding domain ABBFA_02873 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_02873 PF00107 Zinc-binding dehydrogenase ABBFA_02874 PF00962 Adenosine/AMP deaminase ABBFA_02879 PF02445 Quinolinate synthetase A protein ABBFA_02880 PF01960 ArgJ family ABBFA_02881 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABBFA_02881 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABBFA_02882 PF00893 Small Multidrug Resistance protein ABBFA_02884 PF05275 Copper resistance protein B precursor (CopB) ABBFA_02885 PF07732 Multicopper oxidase ABBFA_02885 PF00394 Multicopper oxidase ABBFA_02885 PF07731 Multicopper oxidase ABBFA_02888 PF00834 Ribulose-phosphate 3 epimerase family ABBFA_02890 PF00756 Putative esterase ABBFA_02892 PF04445 Putative SAM-dependent methyltransferase ABBFA_02893 PF00814 Glycoprotease family ABBFA_02894 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_02895 PF00293 NUDIX domain ABBFA_02903 PF00425 chorismate binding enzyme ABBFA_02903 PF04715 Anthranilate synthase component I, N terminal region ABBFA_02904 PF00155 Aminotransferase class I and II ABBFA_02905 PF00815 Histidinol dehydrogenase ABBFA_02906 PF01634 ATP phosphoribosyltransferase ABBFA_02907 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ABBFA_02908 PF01722 BolA-like protein ABBFA_02909 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ABBFA_02910 PF04963 Sigma-54 factor, core binding domain ABBFA_02910 PF04552 Sigma-54, DNA binding domain ABBFA_02910 PF00309 Sigma-54 factor, Activator interacting domain (AID) ABBFA_02916 PF00795 Carbon-nitrogen hydrolase ABBFA_02918 PF01047 MarR family ABBFA_02919 PF02566 OsmC-like protein ABBFA_02920 PF00437 Type II/IV secretion system protein ABBFA_02924 PF00476 DNA polymerase family A ABBFA_02924 PF01612 3'-5' exonuclease ABBFA_02924 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ABBFA_02924 PF01367 5'-3' exonuclease, C-terminal SAM fold ABBFA_02925 PF02325 YGGT family ABBFA_02926 PF03807 NADP oxidoreductase coenzyme F420-dependent ABBFA_02926 PF14748 Pyrroline-5-carboxylate reductase dimerisation ABBFA_02927 PF11734 TilS substrate C-terminal domain ABBFA_02927 PF01171 PP-loop family ABBFA_02927 PF09179 TilS substrate binding domain ABBFA_02928 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ABBFA_02929 PF02541 Ppx/GppA phosphatase family ABBFA_02930 PF00085 Thioredoxin ABBFA_02931 PF07497 Rho termination factor, RNA-binding domain ABBFA_02931 PF07498 Rho termination factor, N-terminal domain ABBFA_02931 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABBFA_02933 PF00216 Bacterial DNA-binding protein ABBFA_02934 PF03483 B3/4 domain ABBFA_02934 PF01588 Putative tRNA binding domain ABBFA_02934 PF03147 Ferredoxin-fold anticodon binding domain ABBFA_02934 PF03484 tRNA synthetase B5 domain ABBFA_02934 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ABBFA_02935 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ABBFA_02935 PF01409 tRNA synthetases class II core domain (F) ABBFA_02938 PF00453 Ribosomal protein L20 ABBFA_02939 PF01632 Ribosomal protein L35 ABBFA_02940 PF07690 Major Facilitator Superfamily ABBFA_02941 PF09335 SNARE associated Golgi protein ABBFA_02942 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_02942 PF00043 Glutathione S-transferase, C-terminal domain ABBFA_02943 PF05198 Translation initiation factor IF-3, N-terminal domain ABBFA_02943 PF00707 Translation initiation factor IF-3, C-terminal domain ABBFA_02944 PF02824 TGS domain ABBFA_02944 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ABBFA_02944 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ABBFA_02944 PF03129 Anticodon binding domain ABBFA_02945 PF13193 AMP-binding enzyme C-terminal domain ABBFA_02945 PF00501 AMP-binding enzyme ABBFA_02946 PF04751 Protein of unknown function (DUF615) ABBFA_02947 PF00381 PTS HPr component phosphorylation site ABBFA_02948 PF03668 P-loop ATPase protein family ABBFA_02949 PF02569 Pantoate-beta-alanine ligase ABBFA_02950 PF02548 Ketopantoate hydroxymethyltransferase ABBFA_02951 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ABBFA_02952 PF01743 Poly A polymerase head domain ABBFA_02952 PF12627 Probable RNA and SrmB- binding site of polymerase A ABBFA_02952 PF12626 Polymerase A arginine-rich C-terminus ABBFA_02954 PF03819 MazG nucleotide pyrophosphohydrolase domain ABBFA_02956 PF04607 Region found in RelA / SpoT proteins ABBFA_02956 PF13291 ACT domain ABBFA_02956 PF02824 TGS domain ABBFA_02957 PF05958 tRNA (Uracil-5-)-methyltransferase ABBFA_02959 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_02960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ABBFA_02960 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_02960 PF01627 Hpt domain ABBFA_02960 PF00072 Response regulator receiver domain ABBFA_02960 PF00672 HAMP domain ABBFA_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_02961 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_02962 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABBFA_02962 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABBFA_02963 PF01261 Xylose isomerase-like TIM barrel ABBFA_02965 PF00106 short chain dehydrogenase ABBFA_02966 PF02233 NAD(P) transhydrogenase beta subunit ABBFA_02967 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ABBFA_02968 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ABBFA_02968 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ABBFA_02969 PF00892 EamA-like transporter family ABBFA_02971 PF07690 Major Facilitator Superfamily ABBFA_02972 PF01207 Dihydrouridine synthase (Dus) ABBFA_02974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_02974 PF03466 LysR substrate binding domain ABBFA_02975 PF00899 ThiF family ABBFA_02976 PF00694 Aconitase C-terminal domain ABBFA_02976 PF00330 Aconitase family (aconitate hydratase) ABBFA_02977 PF01026 TatD related DNase ABBFA_02980 PF00009 Elongation factor Tu GTP binding domain ABBFA_02980 PF16658 Class II release factor RF3, C-terminal domain ABBFA_02980 PF03144 Elongation factor Tu domain 2 ABBFA_02984 PF00990 Diguanylate cyclase, GGDEF domain ABBFA_02984 PF00563 EAL domain ABBFA_02984 PF03707 Bacterial signalling protein N terminal repeat ABBFA_02985 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ABBFA_02985 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ABBFA_02986 PF10369 Small subunit of acetolactate synthase ABBFA_02987 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ABBFA_02987 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ABBFA_02987 PF00205 Thiamine pyrophosphate enzyme, central domain ABBFA_02989 PF09334 tRNA synthetases class I (M) ABBFA_02989 PF00133 tRNA synthetases class I (I, L, M and V) ABBFA_02989 PF08264 Anticodon-binding domain of tRNA ABBFA_02989 PF13603 Leucyl-tRNA synthetase, Domain 2 ABBFA_02992 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ABBFA_02993 PF12704 MacB-like periplasmic core domain ABBFA_02993 PF02687 FtsX-like permease family ABBFA_02993 PF00005 ABC transporter ABBFA_02994 PF02321 Outer membrane efflux protein ABBFA_02997 PF00929 Exonuclease ABBFA_02998 PF03193 RsgA GTPase ABBFA_03000 PF00462 Glutaredoxin ABBFA_03001 PF02556 Preprotein translocase subunit SecB ABBFA_03003 PF01926 50S ribosome-binding GTPase ABBFA_03003 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ABBFA_03004 PF13360 PQQ-like domain ABBFA_03006 PF13393 Histidyl-tRNA synthetase ABBFA_03006 PF03129 Anticodon binding domain ABBFA_03007 PF04551 GcpE protein ABBFA_03008 PF13464 Domain of unknown function (DUF4115) ABBFA_03010 PF04055 Radical SAM superfamily ABBFA_03011 PF00334 Nucleoside diphosphate kinase ABBFA_03012 PF04384 Iron-sulphur cluster assembly ABBFA_03013 PF01569 PAP2 superfamily ABBFA_03014 PF00534 Glycosyl transferases group 1 ABBFA_03014 PF13439 Glycosyltransferase Family 4 ABBFA_03015 PF03572 Peptidase family S41 ABBFA_03015 PF17804 Tail specific protease N-terminal domain ABBFA_03015 PF00595 PDZ domain ABBFA_03015 PF11818 C-terminal domain of tail specific protease (DUF3340) ABBFA_03016 PF00933 Glycosyl hydrolase family 3 N terminal domain ABBFA_03018 PF00561 alpha/beta hydrolase fold ABBFA_03019 PF00171 Aldehyde dehydrogenase family ABBFA_03020 PF00171 Aldehyde dehydrogenase family ABBFA_03021 PF01202 Shikimate kinase ABBFA_03022 PF02447 GntP family permease ABBFA_03023 PF01081 KDPG and KHG aldolase ABBFA_03024 PF00920 Dehydratase family ABBFA_03025 PF00871 Acetokinase family ABBFA_03026 PF07085 DRTGG domain ABBFA_03026 PF01515 Phosphate acetyl/butaryl transferase ABBFA_03027 PF05681 Fumarate hydratase (Fumerase) ABBFA_03027 PF05683 Fumarase C-terminus ABBFA_03030 PF06689 ClpX C4-type zinc finger ABBFA_03030 PF10431 C-terminal, D2-small domain, of ClpB protein ABBFA_03030 PF07724 AAA domain (Cdc48 subfamily) ABBFA_03031 PF00574 Clp protease ABBFA_03032 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_03032 PF05698 Bacterial trigger factor protein (TF) C-terminus ABBFA_03032 PF05697 Bacterial trigger factor protein (TF) ABBFA_03033 PF00593 TonB dependent receptor ABBFA_03033 PF07715 TonB-dependent Receptor Plug Domain ABBFA_03034 PF18331 PKHD-type hydroxylase C-terminal domain ABBFA_03034 PF13640 2OG-Fe(II) oxygenase superfamily ABBFA_03035 PF08502 LeuA allosteric (dimerisation) domain ABBFA_03035 PF00682 HMGL-like ABBFA_03036 PF00561 alpha/beta hydrolase fold ABBFA_03037 PF00561 alpha/beta hydrolase fold ABBFA_03037 PF07021 Methionine biosynthesis protein MetW ABBFA_03039 PF01725 Ham1 family ABBFA_03041 PF02416 mttA/Hcf106 family ABBFA_03042 PF02416 mttA/Hcf106 family ABBFA_03043 PF00902 Sec-independent protein translocase protein (TatC) ABBFA_03047 PF01790 Prolipoprotein diacylglyceryl transferase ABBFA_03050 PF00303 Thymidylate synthase ABBFA_03051 PF00186 Dihydrofolate reductase ABBFA_03053 PF01625 Peptide methionine sulfoxide reductase ABBFA_03055 PF01618 MotA/TolQ/ExbB proton channel family ABBFA_03057 PF01842 ACT domain ABBFA_03057 PF00551 Formyl transferase ABBFA_03059 PF00171 Aldehyde dehydrogenase family ABBFA_03060 PF00830 Ribosomal L28 family ABBFA_03061 PF00471 Ribosomal protein L33 ABBFA_03062 PF02254 TrkA-N domain ABBFA_03062 PF00999 Sodium/hydrogen exchanger family ABBFA_03066 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ABBFA_03067 PF13361 UvrD-like helicase C-terminal domain ABBFA_03067 PF00580 UvrD/REP helicase N-terminal domain ABBFA_03070 PF01396 Topoisomerase DNA binding C4 zinc finger ABBFA_03070 PF01751 Toprim domain ABBFA_03070 PF08272 Topoisomerase I zinc-ribbon-like ABBFA_03070 PF01131 DNA topoisomerase ABBFA_03072 PF01638 HxlR-like helix-turn-helix ABBFA_03073 PF08240 Alcohol dehydrogenase GroES-like domain ABBFA_03073 PF00107 Zinc-binding dehydrogenase ABBFA_03076 PF01810 LysE type translocator ABBFA_03077 PF03279 Bacterial lipid A biosynthesis acyltransferase ABBFA_03079 PF00375 Sodium:dicarboxylate symporter family ABBFA_03081 PF02774 Semialdehyde dehydrogenase, dimerisation domain ABBFA_03081 PF01118 Semialdehyde dehydrogenase, NAD binding domain ABBFA_03085 PF01416 tRNA pseudouridine synthase ABBFA_03087 PF01176 Translation initiation factor 1A / IF-1 ABBFA_03090 PF00180 Isocitrate/isopropylmalate dehydrogenase ABBFA_03092 PF00694 Aconitase C-terminal domain ABBFA_03093 PF00330 Aconitase family (aconitate hydratase) ABBFA_03095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_03095 PF03466 LysR substrate binding domain ABBFA_03097 PF00293 NUDIX domain ABBFA_03098 PF00391 PEP-utilising enzyme, mobile domain ABBFA_03098 PF02896 PEP-utilising enzyme, TIM barrel domain ABBFA_03098 PF01590 GAF domain ABBFA_03098 PF05524 PEP-utilising enzyme, N-terminal ABBFA_03099 PF00141 Peroxidase ABBFA_03100 PF12706 Beta-lactamase superfamily domain ABBFA_03101 PF03466 LysR substrate binding domain ABBFA_03101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_03103 PF02798 Glutathione S-transferase, N-terminal domain ABBFA_03104 PF08279 HTH domain ABBFA_03104 PF13280 WYL domain ABBFA_03105 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_03106 PF00849 RNA pseudouridylate synthase ABBFA_03106 PF01479 S4 domain ABBFA_03107 PF00575 S1 RNA binding domain ABBFA_03107 PF10150 Ribonuclease E/G family ABBFA_03107 PF12111 Polyribonucleotide phosphorylase C terminal ABBFA_03108 PF00501 AMP-binding enzyme ABBFA_03108 PF13193 AMP-binding enzyme C-terminal domain ABBFA_03111 PF03466 LysR substrate binding domain ABBFA_03111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_03112 PF00106 short chain dehydrogenase ABBFA_03113 PF04055 Radical SAM superfamily ABBFA_03113 PF06969 HemN C-terminal domain ABBFA_03115 PF01554 MatE ABBFA_03116 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_03116 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_03116 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_03117 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_03117 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_03118 PF03109 ABC1 family ABBFA_03119 PF01197 Ribosomal protein L31 ABBFA_03121 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ABBFA_03125 PF03884 DNA gyrase inhibitor YacG ABBFA_03126 PF00753 Metallo-beta-lactamase superfamily ABBFA_03127 PF00762 Ferrochelatase ABBFA_03129 PF01177 Asp/Glu/Hydantoin racemase ABBFA_03133 PF01206 Sulfurtransferase TusA ABBFA_03134 PF00571 CBS domain ABBFA_03134 PF03471 Transporter associated domain ABBFA_03135 PF00795 Carbon-nitrogen hydrolase ABBFA_03136 PF01588 Putative tRNA binding domain ABBFA_03138 PF07963 Prokaryotic N-terminal methylation motif ABBFA_03138 PF08334 Type II secretion system (T2SS), protein G ABBFA_03139 PF00482 Type II secretion system (T2SS), protein F ABBFA_03140 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ABBFA_03140 PF00271 Helicase conserved C-terminal domain ABBFA_03140 PF18074 Primosomal protein N C-terminal domain ABBFA_03140 PF00270 DEAD/DEAH box helicase ABBFA_03140 PF17764 3′ DNA-binding domain (3′BD) ABBFA_03141 PF02254 TrkA-N domain ABBFA_03141 PF00999 Sodium/hydrogen exchanger family ABBFA_03142 PF01430 Hsp33 protein ABBFA_03144 PF00226 DnaJ domain ABBFA_03144 PF01556 DnaJ C terminal domain ABBFA_03146 PF01544 CorA-like Mg2+ transporter protein ABBFA_03147 PF03725 3' exoribonuclease family, domain 2 ABBFA_03147 PF00013 KH domain ABBFA_03147 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ABBFA_03147 PF00575 S1 RNA binding domain ABBFA_03147 PF01138 3' exoribonuclease family, domain 1 ABBFA_03148 PF00312 Ribosomal protein S15 ABBFA_03150 PF13538 UvrD-like helicase C-terminal domain ABBFA_03151 PF13361 UvrD-like helicase C-terminal domain ABBFA_03151 PF00580 UvrD/REP helicase N-terminal domain ABBFA_03151 PF12705 PD-(D/E)XK nuclease superfamily ABBFA_03152 PF17946 RecC C-terminal domain ABBFA_03154 PF03976 Polyphosphate kinase 2 (PPK2) ABBFA_03156 PF01209 ubiE/COQ5 methyltransferase family ABBFA_03158 PF03109 ABC1 family ABBFA_03159 PF01494 FAD binding domain ABBFA_03160 PF01494 FAD binding domain ABBFA_03161 PF01502 Phosphoribosyl-AMP cyclohydrolase ABBFA_03164 PF00361 Proton-conducting membrane transporter ABBFA_03164 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ABBFA_03164 PF13244 Domain of unknown function (DUF4040) ABBFA_03164 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ABBFA_03165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABBFA_03166 PF00361 Proton-conducting membrane transporter ABBFA_03168 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ABBFA_03170 PF02033 Ribosome-binding factor A ABBFA_03171 PF11987 Translation-initiation factor 2 ABBFA_03171 PF08364 Bacterial translation initiation factor IF-2 associated region ABBFA_03171 PF00009 Elongation factor Tu GTP binding domain ABBFA_03171 PF04760 Translation initiation factor IF-2, N-terminal region ABBFA_03172 PF08529 NusA N-terminal domain ABBFA_03172 PF00575 S1 RNA binding domain ABBFA_03172 PF13184 NusA-like KH domain ABBFA_03173 PF02576 RimP N-terminal domain ABBFA_03173 PF17384 RimP C-terminal SH3 domain ABBFA_03177 PF03840 Preprotein translocase SecG subunit ABBFA_03178 PF00121 Triosephosphate isomerase ABBFA_03179 PF00437 Type II/IV secretion system protein ABBFA_03179 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ABBFA_03180 PF00482 Type II secretion system (T2SS), protein F ABBFA_03181 PF06750 Bacterial Peptidase A24 N-terminal domain ABBFA_03181 PF01478 Type IV leader peptidase family ABBFA_03182 PF01121 Dephospho-CoA kinase ABBFA_03184 PF00588 SpoU rRNA Methylase family ABBFA_03184 PF08032 RNA 2'-O ribose methyltransferase substrate binding ABBFA_03185 PF06865 Pyrimidine/purine nucleoside phosphorylase ABBFA_03187 PF02463 RecF/RecN/SMC N terminal domain ABBFA_03188 PF02622 Uncharacterized ACR, COG1678 ABBFA_03189 PF03652 Holliday junction resolvase ABBFA_03190 PF13533 Biotin-lipoyl like ABBFA_03195 PF02805 Metal binding domain of Ada ABBFA_03195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ABBFA_03195 PF12833 Helix-turn-helix domain ABBFA_03195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ABBFA_03196 PF01066 CDP-alcohol phosphatidyltransferase ABBFA_03198 PF02151 UvrB/uvrC motif ABBFA_03198 PF08459 UvrC Helix-hairpin-helix N-terminal ABBFA_03198 PF01541 GIY-YIG catalytic domain ABBFA_03202 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_03202 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABBFA_03202 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ABBFA_03203 PF00108 Thiolase, N-terminal domain ABBFA_03203 PF02803 Thiolase, C-terminal domain ABBFA_03206 PF09278 MerR, DNA binding ABBFA_03206 PF00376 MerR family regulatory protein ABBFA_03208 PF01323 DSBA-like thioredoxin domain ABBFA_03211 PF00183 Hsp90 protein ABBFA_03211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_03214 PF13726 Na+-H+ antiporter family ABBFA_03214 PF03553 Na+/H+ antiporter family ABBFA_03219 PF04998 RNA polymerase Rpb1, domain 5 ABBFA_03219 PF05000 RNA polymerase Rpb1, domain 4 ABBFA_03219 PF04983 RNA polymerase Rpb1, domain 3 ABBFA_03219 PF00623 RNA polymerase Rpb1, domain 2 ABBFA_03219 PF04997 RNA polymerase Rpb1, domain 1 ABBFA_03220 PF04560 RNA polymerase Rpb2, domain 7 ABBFA_03220 PF04565 RNA polymerase Rpb2, domain 3 ABBFA_03220 PF04561 RNA polymerase Rpb2, domain 2 ABBFA_03220 PF00562 RNA polymerase Rpb2, domain 6 ABBFA_03220 PF10385 RNA polymerase beta subunit external 1 domain ABBFA_03220 PF04563 RNA polymerase beta subunit ABBFA_03221 PF16320 Ribosomal protein L7/L12 dimerisation domain ABBFA_03221 PF00542 Ribosomal protein L7/L12 C-terminal domain ABBFA_03222 PF00466 Ribosomal protein L10 ABBFA_03223 PF00687 Ribosomal protein L1p/L10e family ABBFA_03224 PF00298 Ribosomal protein L11, RNA binding domain ABBFA_03224 PF03946 Ribosomal protein L11, N-terminal domain ABBFA_03225 PF00467 KOW motif ABBFA_03225 PF02357 Transcription termination factor nusG ABBFA_03226 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ABBFA_03228 PF03143 Elongation factor Tu C-terminal domain ABBFA_03228 PF03144 Elongation factor Tu domain 2 ABBFA_03228 PF00009 Elongation factor Tu GTP binding domain ABBFA_03233 PF04715 Anthranilate synthase component I, N terminal region ABBFA_03233 PF00425 chorismate binding enzyme ABBFA_03234 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_03235 PF00498 FHA domain ABBFA_03235 PF12401 Protein of unknown function (DUF2662) ABBFA_03236 PF03958 Bacterial type II/III secretion system short domain ABBFA_03236 PF00263 Bacterial type II and III secretion system protein ABBFA_03239 PF00816 H-NS histone family ABBFA_03244 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ABBFA_03244 PF03900 Porphobilinogen deaminase, C-terminal domain ABBFA_03245 PF00072 Response regulator receiver domain ABBFA_03245 PF04397 LytTr DNA-binding domain ABBFA_03246 PF06580 Histidine kinase ABBFA_03246 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_03246 PF07694 5TMR of 5TMR-LYT ABBFA_03247 PF14698 Argininosuccinate lyase C-terminal ABBFA_03247 PF00206 Lyase ABBFA_03248 PF04362 Bacterial Fe(2+) trafficking ABBFA_03249 PF01895 PhoU domain ABBFA_03250 PF02321 Outer membrane efflux protein ABBFA_03251 PF00892 EamA-like transporter family ABBFA_03254 PF13667 ThiC-associated domain ABBFA_03254 PF01964 Radical SAM ThiC family ABBFA_03255 PF00293 NUDIX domain ABBFA_03256 PF00149 Calcineurin-like phosphoesterase ABBFA_03257 PF01258 Prokaryotic dksA/traR C4-type zinc finger ABBFA_03258 PF00749 tRNA synthetases class I (E and Q), catalytic domain ABBFA_03259 PF01098 Cell cycle protein ABBFA_03260 PF08245 Mur ligase middle domain ABBFA_03260 PF02875 Mur ligase family, glutamate ligase domain ABBFA_03262 PF07670 Nucleoside recognition ABBFA_03262 PF02421 Ferrous iron transport protein B ABBFA_03262 PF07664 Ferrous iron transport protein B C terminus ABBFA_03264 PF02899 Phage integrase, N-terminal SAM-like domain ABBFA_03264 PF00589 Phage integrase family ABBFA_03265 PF10411 Disulfide bond isomerase protein N-terminus ABBFA_03265 PF13098 Thioredoxin-like domain ABBFA_03266 PF01842 ACT domain ABBFA_03266 PF03447 Homoserine dehydrogenase, NAD binding domain ABBFA_03266 PF00742 Homoserine dehydrogenase ABBFA_03267 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_03268 PF00768 D-alanyl-D-alanine carboxypeptidase ABBFA_03269 PF00072 Response regulator receiver domain ABBFA_03269 PF00196 Bacterial regulatory proteins, luxR family ABBFA_03270 PF00512 His Kinase A (phospho-acceptor) domain ABBFA_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ABBFA_03271 PF00072 Response regulator receiver domain ABBFA_03271 PF02954 Bacterial regulatory protein, Fis family ABBFA_03271 PF00158 Sigma-54 interaction domain ABBFA_03272 PF00595 PDZ domain ABBFA_03272 PF03572 Peptidase family S41 ABBFA_03273 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ABBFA_03273 PF01676 Metalloenzyme superfamily ABBFA_03274 PF03739 Lipopolysaccharide export system permease LptF/LptG ABBFA_03276 PF02789 Cytosol aminopeptidase family, N-terminal domain ABBFA_03276 PF00883 Cytosol aminopeptidase family, catalytic domain ABBFA_03280 PF00677 Lumazine binding domain ABBFA_03282 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ABBFA_03282 PF01872 RibD C-terminal domain ABBFA_03283 PF03477 ATP cone domain ABBFA_03284 PF00909 Ammonium Transporter Family ABBFA_03285 PF00543 Nitrogen regulatory protein P-II ABBFA_03287 PF13335 Magnesium chelatase, subunit ChlI C-terminal ABBFA_03287 PF01078 Magnesium chelatase, subunit ChlI ABBFA_03288 PF00155 Aminotransferase class I and II ABBFA_03288 PF00392 Bacterial regulatory proteins, gntR family ABBFA_03290 PF00701 Dihydrodipicolinate synthetase family ABBFA_03292 PF03573 outer membrane porin, OprD family ABBFA_03293 PF00719 Inorganic pyrophosphatase ABBFA_03296 PF00501 AMP-binding enzyme ABBFA_03296 PF13193 AMP-binding enzyme C-terminal domain ABBFA_03297 PF03989 DNA gyrase C-terminal domain, beta-propeller ABBFA_03297 PF00521 DNA gyrase/topoisomerase IV, subunit A ABBFA_03298 PF07690 Major Facilitator Superfamily ABBFA_03299 PF03458 UPF0126 domain ABBFA_03300 PF02810 SEC-C motif ABBFA_03301 PF03741 Integral membrane protein TerC family ABBFA_03301 PF03471 Transporter associated domain ABBFA_03302 PF03641 Possible lysine decarboxylase ABBFA_03303 PF07690 Major Facilitator Superfamily ABBFA_03305 PF00817 impB/mucB/samB family ABBFA_03305 PF11798 IMS family HHH motif ABBFA_03305 PF11799 impB/mucB/samB family C-terminal domain ABBFA_03308 PF11842 Domain of unknown function (DUF3362) ABBFA_03308 PF04055 Radical SAM superfamily ABBFA_03308 PF08497 Radical SAM N-terminal ABBFA_03312 PF03358 NADPH-dependent FMN reductase ABBFA_03314 PF00291 Pyridoxal-phosphate dependent enzyme ABBFA_03318 PF00440 Bacterial regulatory proteins, tetR family ABBFA_03323 PF01327 Polypeptide deformylase ABBFA_03325 PF17782 DprA winged helix domain ABBFA_03325 PF02481 DNA recombination-mediator protein A ABBFA_03326 PF01300 Telomere recombination ABBFA_03327 PF00892 EamA-like transporter family ABBFA_03328 PF00440 Bacterial regulatory proteins, tetR family ABBFA_03329 PF07690 Major Facilitator Superfamily ABBFA_03331 PF00255 Glutathione peroxidase ABBFA_03333 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ABBFA_03334 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABBFA_03334 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABBFA_03335 PF00231 ATP synthase ABBFA_03336 PF02874 ATP synthase alpha/beta family, beta-barrel domain ABBFA_03336 PF00306 ATP synthase alpha/beta chain, C terminal domain ABBFA_03336 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ABBFA_03337 PF00213 ATP synthase delta (OSCP) subunit ABBFA_03338 PF00430 ATP synthase B/B' CF(0) ABBFA_03339 PF00137 ATP synthase subunit C ABBFA_03340 PF00119 ATP synthase A chain ABBFA_03344 PF00005 ABC transporter ABBFA_03345 PF00950 ABC 3 transport family ABBFA_03346 PF01810 LysE type translocator ABBFA_03347 PF04261 Dyp-type peroxidase family ABBFA_03348 PF03949 Malic enzyme, NAD binding domain ABBFA_03348 PF00390 Malic enzyme, N-terminal domain ABBFA_03349 PF03485 Arginyl tRNA synthetase N terminal domain ABBFA_03349 PF00750 tRNA synthetases class I (R) ABBFA_03349 PF05746 DALR anticodon binding domain ABBFA_03353 PF05726 Pirin C-terminal cupin domain ABBFA_03353 PF02678 Pirin ABBFA_03355 PF03551 Transcriptional regulator PadR-like family ABBFA_03356 PF13427 Domain of unknown function (DUF4111) ABBFA_03356 PF01909 Nucleotidyltransferase domain ABBFA_03357 PF02540 NAD synthase ABBFA_03357 PF00117 Glutamine amidotransferase class-I ABBFA_03357 PF00958 GMP synthase C terminal domain ABBFA_03358 PF04286 Protein of unknown function (DUF445) ABBFA_03359 PF07681 DoxX ABBFA_03360 PF09335 SNARE associated Golgi protein ABBFA_03363 PF13614 AAA domain ABBFA_03365 PF01722 BolA-like protein ABBFA_03368 PF01648 4'-phosphopantetheinyl transferase superfamily ABBFA_03369 PF12697 Alpha/beta hydrolase family ABBFA_03372 PF00975 Thioesterase domain ABBFA_03372 PF00501 AMP-binding enzyme ABBFA_03372 PF00550 Phosphopantetheine attachment site ABBFA_03372 PF00668 Condensation domain ABBFA_03372 PF13193 AMP-binding enzyme C-terminal domain ABBFA_03373 PF00109 Beta-ketoacyl synthase, N-terminal domain ABBFA_03373 PF08242 Methyltransferase domain ABBFA_03373 PF00550 Phosphopantetheine attachment site ABBFA_03373 PF02801 Beta-ketoacyl synthase, C-terminal domain ABBFA_03373 PF14765 Polyketide synthase dehydratase ABBFA_03373 PF00975 Thioesterase domain ABBFA_03373 PF16197 Ketoacyl-synthetase C-terminal extension ABBFA_03374 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_03374 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_03374 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_03375 PF00501 AMP-binding enzyme ABBFA_03376 PF03472 Autoinducer binding domain ABBFA_03376 PF00196 Bacterial regulatory proteins, luxR family ABBFA_03378 PF00765 Autoinducer synthase ABBFA_03379 PF00083 Sugar (and other) transporter ABBFA_03379 PF07690 Major Facilitator Superfamily ABBFA_03380 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_03381 PF00378 Enoyl-CoA hydratase/isomerase ABBFA_03382 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ABBFA_03382 PF02770 Acyl-CoA dehydrogenase, middle domain ABBFA_03382 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ABBFA_03383 PF13193 AMP-binding enzyme C-terminal domain ABBFA_03383 PF00501 AMP-binding enzyme ABBFA_03384 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ABBFA_03384 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ABBFA_03385 PF00171 Aldehyde dehydrogenase family ABBFA_03387 PF00324 Amino acid permease ABBFA_03388 PF00324 Amino acid permease ABBFA_03389 PF01042 Endoribonuclease L-PSP ABBFA_03390 PF00842 Alanine racemase, C-terminal domain ABBFA_03390 PF01168 Alanine racemase, N-terminal domain ABBFA_03391 PF01266 FAD dependent oxidoreductase ABBFA_03392 PF01037 Lrp/AsnC ligand binding domain ABBFA_03394 PF07715 TonB-dependent Receptor Plug Domain ABBFA_03394 PF00593 TonB dependent receptor ABBFA_03397 PF00849 RNA pseudouridylate synthase ABBFA_03401 PF00293 NUDIX domain ABBFA_03405 PF00330 Aconitase family (aconitate hydratase) ABBFA_03405 PF00694 Aconitase C-terminal domain ABBFA_03406 PF00285 Citrate synthase, C-terminal domain ABBFA_03408 PF07729 FCD domain ABBFA_03408 PF00392 Bacterial regulatory proteins, gntR family ABBFA_03409 PF00155 Aminotransferase class I and II ABBFA_03410 PF01565 FAD binding domain ABBFA_03410 PF09330 D-lactate dehydrogenase, membrane binding ABBFA_03411 PF01070 FMN-dependent dehydrogenase ABBFA_03412 PF07729 FCD domain ABBFA_03412 PF00392 Bacterial regulatory proteins, gntR family ABBFA_03413 PF02652 L-lactate permease ABBFA_03414 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABBFA_03414 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ABBFA_03414 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ABBFA_03414 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ABBFA_03415 PF00342 Phosphoglucose isomerase ABBFA_03416 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABBFA_03416 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABBFA_03416 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABBFA_03417 PF00483 Nucleotidyl transferase ABBFA_03418 PF02719 Polysaccharide biosynthesis protein ABBFA_03419 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ABBFA_03420 PF14602 Hexapeptide repeat of succinyl-transferase ABBFA_03420 PF17836 PglD N-terminal domain ABBFA_03420 PF00132 Bacterial transferase hexapeptide (six repeats) ABBFA_03421 PF02397 Bacterial sugar transferase ABBFA_03422 PF13477 Glycosyl transferase 4-like ABBFA_03422 PF00534 Glycosyl transferases group 1 ABBFA_03423 PF00842 Alanine racemase, C-terminal domain ABBFA_03423 PF01757 Acyltransferase family ABBFA_03423 PF01168 Alanine racemase, N-terminal domain ABBFA_03425 PF13439 Glycosyltransferase Family 4 ABBFA_03425 PF00534 Glycosyl transferases group 1 ABBFA_03427 PF01370 NAD dependent epimerase/dehydratase family ABBFA_03428 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ABBFA_03428 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ABBFA_03428 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ABBFA_03429 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ABBFA_03429 PF10531 SLBB domain ABBFA_03429 PF02563 Polysaccharide biosynthesis/export protein ABBFA_03430 PF01451 Low molecular weight phosphotyrosine protein phosphatase ABBFA_03431 PF02706 Chain length determinant protein ABBFA_03431 PF13807 G-rich domain on putative tyrosine kinase ABBFA_03431 PF13614 AAA domain ABBFA_03432 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABBFA_03432 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_03433 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_03433 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ABBFA_03434 PF03023 Lipid II flippase MurJ ABBFA_03435 PF01510 N-acetylmuramoyl-L-alanine amidase ABBFA_03436 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ABBFA_03436 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ABBFA_03438 PF05506 Domain of unknown function (DUF756) ABBFA_03438 PF04185 Phosphoesterase family ABBFA_03439 PF03725 3' exoribonuclease family, domain 2 ABBFA_03439 PF01138 3' exoribonuclease family, domain 1 ABBFA_03440 PF00487 Fatty acid desaturase ABBFA_03441 PF00175 Oxidoreductase NAD-binding domain ABBFA_03442 PF00440 Bacterial regulatory proteins, tetR family ABBFA_03443 PF00440 Bacterial regulatory proteins, tetR family ABBFA_03443 PF08360 QacR-like protein, C-terminal region ABBFA_03444 PF01323 DSBA-like thioredoxin domain ABBFA_03446 PF13419 Haloacid dehalogenase-like hydrolase ABBFA_03447 PF00106 short chain dehydrogenase ABBFA_03450 PF00583 Acetyltransferase (GNAT) family ABBFA_03450 PF00696 Amino acid kinase family ABBFA_03451 PF09084 NMT1/THI5 like ABBFA_03452 PF09084 NMT1/THI5 like ABBFA_03453 PF00296 Luciferase-like monooxygenase ABBFA_03454 PF00528 Binding-protein-dependent transport system inner membrane component ABBFA_03455 PF00005 ABC transporter ABBFA_03456 PF08362 YcdC-like protein, C-terminal region ABBFA_03456 PF00440 Bacterial regulatory proteins, tetR family ABBFA_03457 PF01048 Phosphorylase superfamily ABBFA_03459 PF06574 FAD synthetase ABBFA_03459 PF01687 Riboflavin kinase ABBFA_03460 PF00133 tRNA synthetases class I (I, L, M and V) ABBFA_03460 PF08264 Anticodon-binding domain of tRNA ABBFA_03460 PF06827 Zinc finger found in FPG and IleRS ABBFA_03461 PF01252 Signal peptidase (SPase) II ABBFA_03462 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ABBFA_03467 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ABBFA_03468 PF07859 alpha/beta hydrolase fold ABBFA_03472 PF03466 LysR substrate binding domain ABBFA_03472 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ABBFA_03473 PF01025 GrpE ABBFA_03474 PF00012 Hsp70 protein ABBFA_03478 PF13406 Transglycosylase SLT domain ABBFA_03480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ABBFA_03480 PF02222 ATP-grasp domain ABBFA_03481 PF00731 AIR carboxylase ABBFA_03483 PF01225 Mur ligase family, catalytic domain ABBFA_03483 PF08245 Mur ligase middle domain ABBFA_03483 PF02875 Mur ligase family, glutamate ligase domain ABBFA_03485 PF01569 PAP2 superfamily ABBFA_03486 PF03741 Integral membrane protein TerC family ABBFA_03488 PF03738 Glutathionylspermidine synthase preATP-grasp ABBFA_03489 PF00355 Rieske [2Fe-2S] domain ABBFA_03490 PF01979 Amidohydrolase family ABBFA_03492 PF00156 Phosphoribosyl transferase domain ABBFA_03494 PF10411 Disulfide bond isomerase protein N-terminus ABBFA_03494 PF13098 Thioredoxin-like domain ABBFA_03495 PF01545 Cation efflux family ABBFA_03495 PF16916 Dimerisation domain of Zinc Transporter ABBFA_03496 PF02583 Metal-sensitive transcriptional repressor ABBFA_03497 PF10396 GTP-binding protein TrmE N-terminus ABBFA_03497 PF12631 MnmE helical domain ABBFA_03497 PF01926 50S ribosome-binding GTPase ABBFA_03498 PF02096 60Kd inner membrane protein ABBFA_03498 PF14849 YidC periplasmic domain ABBFA_03499 PF01809 Putative membrane protein insertion efficiency factor ABBFA_03500 PF00825 Ribonuclease P ABBFA_03501 PF00468 Ribosomal protein L34