locus-tag class description JWB57_00020 PF00209 Sodium:neurotransmitter symporter family JWB57_00030 PF01189 16S rRNA methyltransferase RsmB/F JWB57_00030 PF01029 NusB family JWB57_00035 PF02911 Formyl transferase, C-terminal domain JWB57_00035 PF00551 Formyl transferase JWB57_00040 PF00920 Dehydratase family JWB57_00055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_00055 PF03466 LysR substrate binding domain JWB57_00060 PF00860 Permease family JWB57_00065 PF00311 Phosphoenolpyruvate carboxylase JWB57_00070 PF08361 MAATS-type transcriptional repressor, C-terminal region JWB57_00070 PF00440 Bacterial regulatory proteins, tetR family JWB57_00075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JWB57_00080 PF00873 AcrB/AcrD/AcrF family JWB57_00090 PF00684 DnaJ central domain JWB57_00090 PF00226 DnaJ domain JWB57_00090 PF01556 DnaJ C terminal domain JWB57_00100 PF01113 Dihydrodipicolinate reductase, N-terminus JWB57_00100 PF05173 Dihydrodipicolinate reductase, C-terminus JWB57_00110 PF07690 Major Facilitator Superfamily JWB57_00115 PF00248 Aldo/keto reductase family JWB57_00120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_00120 PF03466 LysR substrate binding domain JWB57_00135 PF00392 Bacterial regulatory proteins, gntR family JWB57_00135 PF00155 Aminotransferase class I and II JWB57_00140 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_00140 PF00107 Zinc-binding dehydrogenase JWB57_00145 PF03352 Methyladenine glycosylase JWB57_00160 PF14815 NUDIX domain JWB57_00160 PF00730 HhH-GPD superfamily base excision DNA repair protein JWB57_00160 PF00633 Helix-hairpin-helix motif JWB57_00160 PF10576 Iron-sulfur binding domain of endonuclease III JWB57_00175 PF07043 Protein of unknown function (DUF1328) JWB57_00180 PF03692 Putative zinc- or iron-chelating domain JWB57_00185 PF07995 Glucose / Sorbosone dehydrogenase JWB57_00190 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_00190 PF12002 MgsA AAA+ ATPase C terminal JWB57_00190 PF16193 AAA C-terminal domain JWB57_00195 PF01226 Formate/nitrite transporter JWB57_00205 PF01259 SAICAR synthetase JWB57_00215 PF00701 Dihydrodipicolinate synthetase family JWB57_00220 PF00857 Isochorismatase family JWB57_00225 PF01758 Sodium Bile acid symporter family JWB57_00230 PF01554 MatE JWB57_00235 PF04463 Protein of unknown function (DUF523) JWB57_00240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JWB57_00250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JWB57_00255 PF02798 Glutathione S-transferase, N-terminal domain JWB57_00255 PF14497 Glutathione S-transferase, C-terminal domain JWB57_00265 PF00324 Amino acid permease JWB57_00275 PF02492 CobW/HypB/UreG, nucleotide-binding domain JWB57_00275 PF07683 Cobalamin synthesis protein cobW C-terminal domain JWB57_00285 PF07702 UTRA domain JWB57_00285 PF00392 Bacterial regulatory proteins, gntR family JWB57_00290 PF05962 HutD JWB57_00295 PF01175 Urocanase Rossmann-like domain JWB57_00295 PF17392 Urocanase C-terminal domain JWB57_00295 PF17391 Urocanase N-terminal domain JWB57_00300 PF00221 Aromatic amino acid lyase JWB57_00305 PF00324 Amino acid permease JWB57_00310 PF01979 Amidohydrolase family JWB57_00315 PF00491 Arginase family JWB57_00330 PF01177 Asp/Glu/Hydantoin racemase JWB57_00340 PF00145 C-5 cytosine-specific DNA methylase JWB57_00345 PF08676 MutL C terminal dimerisation domain JWB57_00345 PF01119 DNA mismatch repair protein, C-terminal domain JWB57_00360 PF01380 SIS domain JWB57_00365 PF12804 MobA-like NTP transferase domain JWB57_00365 PF14602 Hexapeptide repeat of succinyl-transferase JWB57_00365 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_00370 PF04608 Phosphatidylglycerophosphatase A JWB57_00375 PF02769 AIR synthase related protein, C-terminal domain JWB57_00375 PF00586 AIR synthase related protein, N-terminal domain JWB57_00380 PF01029 NusB family JWB57_00385 PF00885 6,7-dimethyl-8-ribityllumazine synthase JWB57_00390 PF00925 GTP cyclohydrolase II JWB57_00390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JWB57_00415 PF02580 D-Tyr-tRNA(Tyr) deacylase JWB57_00420 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JWB57_00420 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JWB57_00425 PF00581 Rhodanese-like domain JWB57_00430 PF02666 Phosphatidylserine decarboxylase JWB57_00440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_00440 PF00512 His Kinase A (phospho-acceptor) domain JWB57_00440 PF00989 PAS fold JWB57_00440 PF11808 Phosphate regulon sensor protein PhoR JWB57_00445 PF00072 Response regulator receiver domain JWB57_00445 PF00486 Transcriptional regulatory protein, C terminal JWB57_00455 PF00106 short chain dehydrogenase JWB57_00460 PF01554 MatE JWB57_00465 PF00155 Aminotransferase class I and II JWB57_00470 PF04286 Protein of unknown function (DUF445) JWB57_00485 PF04262 Glutamate-cysteine ligase JWB57_00490 PF02600 Disulfide bond formation protein DsbB JWB57_00495 PF13296 Putative type VI secretion system Rhs element Vgr JWB57_00495 PF04717 Type VI secretion system, phage-baseplate injector JWB57_00495 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JWB57_00500 PF01471 Putative peptidoglycan binding domain JWB57_00500 PF01476 LysM domain JWB57_00500 PF01510 N-acetylmuramoyl-L-alanine amidase JWB57_00525 PF05728 Uncharacterised protein family (UPF0227) JWB57_00530 PF00986 DNA gyrase B subunit, carboxyl terminus JWB57_00530 PF00204 DNA gyrase B JWB57_00530 PF01751 Toprim domain JWB57_00530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_00535 PF04115 Ureidoglycolate lyase JWB57_00540 PF03561 Allantoicase repeat JWB57_00545 PF01494 FAD binding domain JWB57_00555 PF00860 Permease family JWB57_00560 PF00576 HIUase/Transthyretin family JWB57_00590 PF02683 Cytochrome C biogenesis protein transmembrane region JWB57_00590 PF11412 Disulphide bond corrector protein DsbC JWB57_00595 PF00990 Diguanylate cyclase, GGDEF domain JWB57_00595 PF07694 5TMR of 5TMR-LYT JWB57_00600 PF07859 alpha/beta hydrolase fold JWB57_00610 PF03960 ArsC family JWB57_00615 PF03372 Endonuclease/Exonuclease/phosphatase family JWB57_00620 PF00156 Phosphoribosyl transferase domain JWB57_00625 PF00593 TonB dependent receptor JWB57_00625 PF07715 TonB-dependent Receptor Plug Domain JWB57_00635 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JWB57_00635 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JWB57_00640 PF04101 Glycosyltransferase family 28 C-terminal domain JWB57_00640 PF03033 Glycosyltransferase family 28 N-terminal domain JWB57_00645 PF08245 Mur ligase middle domain JWB57_00645 PF01225 Mur ligase family, catalytic domain JWB57_00645 PF02875 Mur ligase family, glutamate ligase domain JWB57_00650 PF01820 D-ala D-ala ligase N-terminus JWB57_00650 PF07478 D-ala D-ala ligase C-terminus JWB57_00655 PF08478 POTRA domain, FtsQ-type JWB57_00655 PF03799 Cell division protein FtsQ JWB57_00660 PF02491 SHS2 domain inserted in FTSA JWB57_00665 PF00091 Tubulin/FtsZ family, GTPase domain JWB57_00665 PF12327 FtsZ family, C-terminal domain JWB57_00670 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JWB57_00680 PF01551 Peptidase family M23 JWB57_00685 PF17831 Pyruvate dehydrogenase E1 component middle domain JWB57_00685 PF00456 Transketolase, thiamine diphosphate binding domain JWB57_00690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JWB57_00690 PF00364 Biotin-requiring enzyme JWB57_00690 PF02817 e3 binding domain JWB57_00700 PF01169 Uncharacterized protein family UPF0016 JWB57_00705 PF00593 TonB dependent receptor JWB57_00705 PF07715 TonB-dependent Receptor Plug Domain JWB57_00710 PF00258 Flavodoxin JWB57_00710 PF01613 Flavin reductase like domain JWB57_00715 PF03692 Putative zinc- or iron-chelating domain JWB57_00720 PF00478 IMP dehydrogenase / GMP reductase domain JWB57_00720 PF00571 CBS domain JWB57_00725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JWB57_00725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JWB57_00725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JWB57_00725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JWB57_00730 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JWB57_00730 PF01243 Pyridoxamine 5'-phosphate oxidase JWB57_00735 PF17768 RecJ OB domain JWB57_00735 PF02272 DHHA1 domain JWB57_00735 PF01368 DHH family JWB57_00755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_00760 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JWB57_00765 PF04452 RNA methyltransferase JWB57_00770 PF00924 Mechanosensitive ion channel JWB57_00780 PF16177 Acetyl-coenzyme A synthetase N-terminus JWB57_00780 PF00501 AMP-binding enzyme JWB57_00780 PF13193 AMP-binding enzyme C-terminal domain JWB57_00785 PF00857 Isochorismatase family JWB57_00790 PF01037 Lrp/AsnC ligand binding domain JWB57_00795 PF00296 Luciferase-like monooxygenase JWB57_00800 PF03358 NADPH-dependent FMN reductase JWB57_00805 PF00196 Bacterial regulatory proteins, luxR family JWB57_00805 PF00072 Response regulator receiver domain JWB57_00815 PF00672 HAMP domain JWB57_00815 PF00512 His Kinase A (phospho-acceptor) domain JWB57_00815 PF01627 Hpt domain JWB57_00815 PF00072 Response regulator receiver domain JWB57_00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_00820 PF04341 Protein of unknown function, DUF485 JWB57_00825 PF00474 Sodium:solute symporter family JWB57_00835 PF02028 BCCT, betaine/carnitine/choline family transporter JWB57_00845 PF00990 Diguanylate cyclase, GGDEF domain JWB57_00850 PF00005 ABC transporter JWB57_00850 PF17755 UvrA DNA-binding domain JWB57_00850 PF17760 UvrA interaction domain JWB57_00855 PF16925 Tetracyclin repressor-like, C-terminal domain JWB57_00855 PF00440 Bacterial regulatory proteins, tetR family JWB57_00860 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_00860 PF00107 Zinc-binding dehydrogenase JWB57_00870 PF06942 GlpM protein JWB57_00875 PF08543 Phosphomethylpyrimidine kinase JWB57_00875 PF03070 TENA/THI-4/PQQC family JWB57_00875 PF02581 Thiamine monophosphate synthase JWB57_00885 PF07690 Major Facilitator Superfamily JWB57_00890 PF00436 Single-strand binding protein family JWB57_00900 PF03591 AzlC protein JWB57_00910 PF00324 Amino acid permease JWB57_00915 PF00392 Bacterial regulatory proteins, gntR family JWB57_00915 PF00155 Aminotransferase class I and II JWB57_00920 PF00202 Aminotransferase class-III JWB57_00925 PF00171 Aldehyde dehydrogenase family JWB57_00930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_00935 PF00857 Isochorismatase family JWB57_00940 PF05726 Pirin C-terminal cupin domain JWB57_00940 PF02678 Pirin JWB57_00945 PF01593 Flavin containing amine oxidoreductase JWB57_00965 PF07690 Major Facilitator Superfamily JWB57_00970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_00970 PF03466 LysR substrate binding domain JWB57_00990 PF00248 Aldo/keto reductase family JWB57_00995 PF02311 AraC-like ligand binding domain JWB57_00995 PF12833 Helix-turn-helix domain JWB57_01010 PF01638 HxlR-like helix-turn-helix JWB57_01020 PF01638 HxlR-like helix-turn-helix JWB57_01025 PF02525 Flavodoxin-like fold JWB57_01035 PF13302 Acetyltransferase (GNAT) domain JWB57_01045 PF02705 K+ potassium transporter JWB57_01075 PF00230 Major intrinsic protein JWB57_01090 PF00977 Histidine biosynthesis protein JWB57_01095 PF01636 Phosphotransferase enzyme family JWB57_01120 PF00977 Histidine biosynthesis protein JWB57_01135 PF00117 Glutamine amidotransferase class-I JWB57_01140 PF00475 Imidazoleglycerol-phosphate dehydratase JWB57_01160 PF00583 Acetyltransferase (GNAT) family JWB57_01165 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JWB57_01165 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JWB57_01175 PF00672 HAMP domain JWB57_01175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_01175 PF00512 His Kinase A (phospho-acceptor) domain JWB57_01180 PF00486 Transcriptional regulatory protein, C terminal JWB57_01180 PF00072 Response regulator receiver domain JWB57_01185 PF09371 Tex-like protein N-terminal domain JWB57_01185 PF00575 S1 RNA binding domain JWB57_01185 PF16921 Tex protein YqgF-like domain JWB57_01185 PF17674 HHH domain JWB57_01190 PF01740 STAS domain JWB57_01190 PF00916 Sulfate permease family JWB57_01195 PF00106 short chain dehydrogenase JWB57_01200 PF01053 Cys/Met metabolism PLP-dependent enzyme JWB57_01205 PF00005 ABC transporter JWB57_01205 PF12848 ABC transporter JWB57_01230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JWB57_01230 PF00529 HlyD membrane-fusion protein of T1SS JWB57_01235 PF00873 AcrB/AcrD/AcrF family JWB57_01240 PF01545 Cation efflux family JWB57_01270 PF00324 Amino acid permease JWB57_01285 PF00749 tRNA synthetases class I (E and Q), catalytic domain JWB57_01300 PF01795 MraW methylase family JWB57_01310 PF03717 Penicillin-binding Protein dimerisation domain JWB57_01310 PF00905 Penicillin binding protein transpeptidase domain JWB57_01315 PF08245 Mur ligase middle domain JWB57_01315 PF02875 Mur ligase family, glutamate ligase domain JWB57_01315 PF01225 Mur ligase family, catalytic domain JWB57_01320 PF08245 Mur ligase middle domain JWB57_01320 PF01225 Mur ligase family, catalytic domain JWB57_01320 PF02875 Mur ligase family, glutamate ligase domain JWB57_01325 PF00953 Glycosyl transferase family 4 JWB57_01335 PF13847 Methyltransferase domain JWB57_01340 PF00905 Penicillin binding protein transpeptidase domain JWB57_01340 PF17092 Penicillin-binding protein OB-like domain JWB57_01340 PF00912 Transglycosylase JWB57_01345 PF11104 Type IV pilus assembly protein PilM; JWB57_01350 PF05137 Fimbrial assembly protein (PilN) JWB57_01355 PF04350 Pilus assembly protein, PilO JWB57_01365 PF11741 AMIN domain JWB57_01365 PF00263 Bacterial type II and III secretion system protein JWB57_01365 PF03958 Bacterial type II/III secretion system short domain JWB57_01365 PF07660 Secretin and TonB N terminus short domain JWB57_01370 PF01202 Shikimate kinase JWB57_01375 PF01761 3-dehydroquinate synthase JWB57_01385 PF00310 Glutamine amidotransferases class-II JWB57_01385 PF04898 Glutamate synthase central domain JWB57_01385 PF01645 Conserved region in glutamate synthase JWB57_01385 PF01493 GXGXG motif JWB57_01390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JWB57_01390 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_01400 PF04011 LemA family JWB57_01405 PF04536 TPM domain JWB57_01415 PF07963 Prokaryotic N-terminal methylation motif JWB57_01415 PF00114 Pilin (bacterial filament) JWB57_01420 PF15864 Protein glycosylation ligase JWB57_01420 PF04932 O-Antigen ligase JWB57_01420 PF11846 Virulence factor membrane-bound polymerase, C-terminal JWB57_01425 PF00210 Ferritin-like domain JWB57_01430 PF04324 BFD-like [2Fe-2S] binding domain JWB57_01435 PF01042 Endoribonuclease L-PSP JWB57_01440 PF13291 ACT domain JWB57_01440 PF04607 Region found in RelA / SpoT proteins JWB57_01440 PF02824 TGS domain JWB57_01450 PF01192 RNA polymerase Rpb6 JWB57_01455 PF00625 Guanylate kinase JWB57_01460 PF02401 LytB protein JWB57_01500 PF00886 Ribosomal protein S16 JWB57_01505 PF05239 PRC-barrel domain JWB57_01505 PF01782 RimM N-terminal domain JWB57_01510 PF01746 tRNA (Guanine-1)-methyltransferase JWB57_01515 PF01245 Ribosomal protein L19 JWB57_01520 PF00561 alpha/beta hydrolase fold JWB57_01525 PF03280 Proteobacterial lipase chaperone protein JWB57_01530 PF09157 Pseudouridine synthase II TruB, C-terminal JWB57_01530 PF16198 tRNA pseudouridylate synthase B C-terminal domain JWB57_01530 PF01509 TruB family pseudouridylate synthase (N terminal domain) JWB57_01535 PF01925 Sulfite exporter TauE/SafE JWB57_01545 PF00892 EamA-like transporter family JWB57_01550 PF00892 EamA-like transporter family JWB57_01555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JWB57_01555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JWB57_01560 PF02913 FAD linked oxidases, C-terminal domain JWB57_01560 PF01565 FAD binding domain JWB57_01570 PF03992 Antibiotic biosynthesis monooxygenase JWB57_01575 PF02525 Flavodoxin-like fold JWB57_01585 PF07690 Major Facilitator Superfamily JWB57_01590 PF12805 FUSC-like inner membrane protein yccS JWB57_01595 PF00080 Copper/zinc superoxide dismutase (SODC) JWB57_01600 PF01594 AI-2E family transporter JWB57_01605 PF13614 AAA domain JWB57_01625 PF08241 Methyltransferase domain JWB57_01635 PF00324 Amino acid permease JWB57_01640 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JWB57_01640 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JWB57_01645 PF00202 Aminotransferase class-III JWB57_01650 PF04958 Arginine N-succinyltransferase beta subunit JWB57_01655 PF00171 Aldehyde dehydrogenase family JWB57_01660 PF04996 Succinylarginine dihydrolase JWB57_01665 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JWB57_01680 PF05922 Peptidase inhibitor I9 JWB57_01680 PF00082 Subtilase family JWB57_01695 PF03466 LysR substrate binding domain JWB57_01695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_01700 PF00892 EamA-like transporter family JWB57_01715 PF02092 Glycyl-tRNA synthetase beta subunit JWB57_01715 PF05746 DALR anticodon binding domain JWB57_01720 PF02091 Glycyl-tRNA synthetase alpha subunit JWB57_01725 PF07690 Major Facilitator Superfamily JWB57_01740 PF00571 CBS domain JWB57_01745 PF04024 PspC domain JWB57_01755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_01755 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_01755 PF12806 Acetyl-CoA dehydrogenase C-terminal like JWB57_01755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_01765 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JWB57_01765 PF01488 Shikimate / quinate 5-dehydrogenase JWB57_01765 PF08501 Shikimate dehydrogenase substrate binding domain JWB57_01770 PF01218 Coproporphyrinogen III oxidase JWB57_01775 PF00925 GTP cyclohydrolase II JWB57_01780 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JWB57_01780 PF02780 Transketolase, C-terminal domain JWB57_01780 PF02779 Transketolase, pyrimidine binding domain JWB57_01785 PF00459 Inositol monophosphatase family JWB57_01790 PF12343 Cold shock protein DEAD box A JWB57_01790 PF00271 Helicase conserved C-terminal domain JWB57_01790 PF00270 DEAD/DEAH box helicase JWB57_01790 PF03880 DbpA RNA binding domain JWB57_01800 PF00005 ABC transporter JWB57_01805 PF02405 Permease MlaE JWB57_01815 PF05494 MlaC protein JWB57_01825 PF01544 CorA-like Mg2+ transporter protein JWB57_01830 PF03641 Possible lysine decarboxylase JWB57_01835 PF00293 NUDIX domain JWB57_01840 PF00156 Phosphoribosyl transferase domain JWB57_01845 PF17191 RecG wedge domain JWB57_01845 PF00270 DEAD/DEAH box helicase JWB57_01845 PF00271 Helicase conserved C-terminal domain JWB57_01860 PF01553 Acyltransferase JWB57_01870 PF00375 Sodium:dicarboxylate symporter family JWB57_01880 PF01926 50S ribosome-binding GTPase JWB57_01885 PF02082 Transcriptional regulator JWB57_01890 PF00970 Oxidoreductase FAD-binding domain JWB57_01890 PF00042 Globin JWB57_01890 PF00175 Oxidoreductase NAD-binding domain JWB57_01895 PF05872 Bacterial protein of unknown function (DUF853) JWB57_01900 PF01053 Cys/Met metabolism PLP-dependent enzyme JWB57_01905 PF00117 Glutamine amidotransferase class-I JWB57_01910 PF00338 Ribosomal protein S10p/S20e JWB57_01915 PF00297 Ribosomal protein L3 JWB57_01920 PF00573 Ribosomal protein L4/L1 family JWB57_01925 PF00276 Ribosomal protein L23 JWB57_01930 PF00181 Ribosomal Proteins L2, RNA binding domain JWB57_01930 PF03947 Ribosomal Proteins L2, C-terminal domain JWB57_01935 PF00203 Ribosomal protein S19 JWB57_01940 PF00237 Ribosomal protein L22p/L17e JWB57_01950 PF00252 Ribosomal protein L16p/L10e JWB57_01955 PF00831 Ribosomal L29 protein JWB57_01960 PF00366 Ribosomal protein S17 JWB57_01965 PF00238 Ribosomal protein L14p/L23e JWB57_01970 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JWB57_01970 PF00467 KOW motif JWB57_01975 PF00673 ribosomal L5P family C-terminus JWB57_01975 PF00281 Ribosomal protein L5 JWB57_01980 PF00253 Ribosomal protein S14p/S29e JWB57_01985 PF00410 Ribosomal protein S8 JWB57_01990 PF00347 Ribosomal protein L6 JWB57_01995 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JWB57_02000 PF03719 Ribosomal protein S5, C-terminal domain JWB57_02000 PF00333 Ribosomal protein S5, N-terminal domain JWB57_02005 PF00327 Ribosomal protein L30p/L7e JWB57_02010 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JWB57_02015 PF00344 SecY translocase JWB57_02020 PF00444 Ribosomal protein L36 JWB57_02025 PF00416 Ribosomal protein S13/S18 JWB57_02030 PF00411 Ribosomal protein S11 JWB57_02035 PF01479 S4 domain JWB57_02035 PF00163 Ribosomal protein S4/S9 N-terminal domain JWB57_02040 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JWB57_02040 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JWB57_02040 PF01000 RNA polymerase Rpb3/RpoA insert domain JWB57_02045 PF01196 Ribosomal protein L17 JWB57_02050 PF00743 Flavin-binding monooxygenase-like JWB57_02055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_02055 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_02055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_02060 PF03937 Flavinator of succinate dehydrogenase JWB57_02090 PF09526 Probable metal-binding protein (DUF2387) JWB57_02095 PF01432 Peptidase family M3 JWB57_02100 PF00575 S1 RNA binding domain JWB57_02100 PF17876 Cold shock domain JWB57_02100 PF08461 Ribonuclease R winged-helix domain JWB57_02100 PF08206 Ribonuclease B OB domain JWB57_02100 PF00773 RNB domain JWB57_02145 PF01557 Fumarylacetoacetate (FAA) hydrolase family JWB57_02150 PF12833 Helix-turn-helix domain JWB57_02155 PF00892 EamA-like transporter family JWB57_02160 PF03631 Virulence factor BrkB JWB57_02165 PF03358 NADPH-dependent FMN reductase JWB57_02190 PF02130 Uncharacterized protein family UPF0054 JWB57_02195 PF02562 PhoH-like protein JWB57_02200 PF00919 Uncharacterized protein family UPF0004 JWB57_02200 PF04055 Radical SAM superfamily JWB57_02200 PF01938 TRAM domain JWB57_02205 PF01551 Peptidase family M23 JWB57_02205 PF10145 Phage-related minor tail protein JWB57_02205 PF01464 Transglycosylase SLT domain JWB57_02215 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JWB57_02215 PF00056 lactate/malate dehydrogenase, NAD binding domain JWB57_02235 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JWB57_02240 PF01066 CDP-alcohol phosphatidyltransferase JWB57_02285 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_02285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_02285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_02290 PF17932 Tetracyclin repressor-like, C-terminal domain JWB57_02290 PF00440 Bacterial regulatory proteins, tetR family JWB57_02305 PF01039 Carboxyl transferase domain JWB57_02310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_02310 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_02310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_02320 PF02785 Biotin carboxylase C-terminal domain JWB57_02320 PF00289 Biotin carboxylase, N-terminal domain JWB57_02320 PF00364 Biotin-requiring enzyme JWB57_02320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JWB57_02330 PF04386 Stringent starvation protein B JWB57_02335 PF00043 Glutathione S-transferase, C-terminal domain JWB57_02335 PF13417 Glutathione S-transferase, N-terminal domain JWB57_02340 PF00380 Ribosomal protein S9/S16 JWB57_02345 PF00572 Ribosomal protein L13 JWB57_02350 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JWB57_02355 PF00398 Ribosomal RNA adenine dimethylase JWB57_02360 PF00149 Calcineurin-like phosphoesterase JWB57_02380 PF16360 GTP-binding GTPase Middle Region JWB57_02380 PF13167 GTP-binding GTPase N-terminal JWB57_02380 PF01926 50S ribosome-binding GTPase JWB57_02390 PF13091 PLD-like domain JWB57_02395 PF00149 Calcineurin-like phosphoesterase JWB57_02395 PF10518 TAT (twin-arginine translocation) pathway signal sequence JWB57_02400 PF00691 OmpA family JWB57_02400 PF01389 OmpA-like transmembrane domain JWB57_02405 PF17152 Periplasmic sensor domain JWB57_02405 PF00990 Diguanylate cyclase, GGDEF domain JWB57_02440 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_02440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JWB57_02450 PF04273 Putative phosphatase (DUF442) JWB57_02450 PF00753 Metallo-beta-lactamase superfamily JWB57_02455 PF00561 alpha/beta hydrolase fold JWB57_02460 PF00085 Thioredoxin JWB57_02465 PF03061 Thioesterase superfamily JWB57_02475 PF04461 Protein of unknown function (DUF520) JWB57_02485 PF01266 FAD dependent oxidoreductase JWB57_02485 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JWB57_02495 PF03795 YCII-related domain JWB57_02500 PF04279 Intracellular septation protein A JWB57_02505 PF02811 PHP domain JWB57_02510 PF01062 Bestrophin, RFP-TM, chloride channel JWB57_02515 PF04002 RadC-like JAB domain JWB57_02520 PF02441 Flavoprotein JWB57_02520 PF04127 DNA / pantothenate metabolism flavoprotein JWB57_02525 PF07549 SecD/SecF GG Motif JWB57_02525 PF02355 Protein export membrane protein JWB57_02530 PF07549 SecD/SecF GG Motif JWB57_02530 PF13721 SecD export protein N-terminal TM region JWB57_02530 PF02355 Protein export membrane protein JWB57_02535 PF02699 Preprotein translocase subunit JWB57_02540 PF01702 Queuine tRNA-ribosyltransferase JWB57_02555 PF02547 Queuosine biosynthesis protein JWB57_02580 PF00929 Exonuclease JWB57_02585 PF00436 Single-strand binding protein family JWB57_02630 PF10549 ORF11CD3 domain JWB57_02630 PF09669 Phage regulatory protein Rha (Phage_pRha) JWB57_02640 PF00533 BRCA1 C Terminus (BRCT) domain JWB57_02640 PF01653 NAD-dependent DNA ligase adenylation domain JWB57_02640 PF03120 NAD-dependent DNA ligase OB-fold domain JWB57_02640 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JWB57_02640 PF12826 Helix-hairpin-helix motif JWB57_02680 PF00905 Penicillin binding protein transpeptidase domain JWB57_02745 PF01510 N-acetylmuramoyl-L-alanine amidase JWB57_02745 PF01471 Putative peptidoglycan binding domain JWB57_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_02795 PF00512 His Kinase A (phospho-acceptor) domain JWB57_02795 PF07689 KaiB domain JWB57_02800 PF03710 Glutamate-ammonia ligase adenylyltransferase JWB57_02800 PF08335 GlnD PII-uridylyltransferase JWB57_02805 PF01063 Amino-transferase class IV JWB57_02820 PF01522 Polysaccharide deacetylase JWB57_02825 PF00535 Glycosyl transferase family 2 JWB57_02830 PF00534 Glycosyl transferases group 1 JWB57_02830 PF13439 Glycosyltransferase Family 4 JWB57_02860 PF01336 OB-fold nucleic acid binding domain JWB57_02860 PF00152 tRNA synthetases class II (D, K and N) JWB57_02860 PF02938 GAD domain JWB57_02870 PF00593 TonB dependent receptor JWB57_02870 PF07715 TonB-dependent Receptor Plug Domain JWB57_02890 PF06146 Phosphate-starvation-inducible E JWB57_02895 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_02895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_02895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_02895 PF12806 Acetyl-CoA dehydrogenase C-terminal like JWB57_02900 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_02900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_02900 PF12806 Acetyl-CoA dehydrogenase C-terminal like JWB57_02900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_02910 PF00672 HAMP domain JWB57_02910 PF00512 His Kinase A (phospho-acceptor) domain JWB57_02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_02915 PF00072 Response regulator receiver domain JWB57_02915 PF00486 Transcriptional regulatory protein, C terminal JWB57_02920 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JWB57_02940 PF01923 Cobalamin adenosyltransferase JWB57_02945 PF00593 TonB dependent receptor JWB57_02945 PF07715 TonB-dependent Receptor Plug Domain JWB57_02950 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JWB57_02955 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_02980 PF00290 Tryptophan synthase alpha chain JWB57_02985 PF01039 Carboxyl transferase domain JWB57_02990 PF08245 Mur ligase middle domain JWB57_02990 PF02875 Mur ligase family, glutamate ligase domain JWB57_03005 PF00753 Metallo-beta-lactamase superfamily JWB57_03010 PF10417 C-terminal domain of 1-Cys peroxiredoxin JWB57_03010 PF00578 AhpC/TSA family JWB57_03015 PF07517 SecA DEAD-like domain JWB57_03015 PF02810 SEC-C motif JWB57_03015 PF07516 SecA Wing and Scaffold domain JWB57_03015 PF01043 SecA preprotein cross-linking domain JWB57_03025 PF00083 Sugar (and other) transporter JWB57_03025 PF07690 Major Facilitator Superfamily JWB57_03030 PF03006 Haemolysin-III related JWB57_03040 PF13673 Acetyltransferase (GNAT) domain JWB57_03055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JWB57_03055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JWB57_03055 PF00378 Enoyl-CoA hydratase/isomerase JWB57_03060 PF02803 Thiolase, C-terminal domain JWB57_03060 PF00108 Thiolase, N-terminal domain JWB57_03065 PF02311 AraC-like ligand binding domain JWB57_03065 PF12833 Helix-turn-helix domain JWB57_03070 PF02515 CoA-transferase family III JWB57_03075 PF04966 Carbohydrate-selective porin, OprB family JWB57_03080 PF01011 PQQ enzyme repeat JWB57_03085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JWB57_03085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JWB57_03095 PF00893 Small Multidrug Resistance protein JWB57_03105 PF02803 Thiolase, C-terminal domain JWB57_03105 PF00108 Thiolase, N-terminal domain JWB57_03115 PF13505 Outer membrane protein beta-barrel domain JWB57_03115 PF00691 OmpA family JWB57_03125 PF01139 tRNA-splicing ligase RtcB JWB57_03130 PF00324 Amino acid permease JWB57_03135 PF05175 Methyltransferase small domain JWB57_03135 PF08468 Methyltransferase small domain N-terminal JWB57_03140 PF00860 Permease family JWB57_03145 PF03144 Elongation factor Tu domain 2 JWB57_03145 PF00009 Elongation factor Tu GTP binding domain JWB57_03145 PF00679 Elongation factor G C-terminus JWB57_03150 PF01741 Large-conductance mechanosensitive channel, MscL JWB57_03165 PF06827 Zinc finger found in FPG and IleRS JWB57_03165 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JWB57_03165 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JWB57_03170 PF02245 Methylpurine-DNA glycosylase (MPG) JWB57_03175 PF07715 TonB-dependent Receptor Plug Domain JWB57_03175 PF00593 TonB dependent receptor JWB57_03180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_03195 PF10411 Disulfide bond isomerase protein N-terminus JWB57_03195 PF13098 Thioredoxin-like domain JWB57_03200 PF01571 Aminomethyltransferase folate-binding domain JWB57_03210 PF04343 Protein of unknown function, DUF488 JWB57_03215 PF03831 PhnA domain JWB57_03215 PF08274 PhnA Zinc-Ribbon JWB57_03225 PF07411 Domain of unknown function (DUF1508) JWB57_03230 PF04073 Aminoacyl-tRNA editing domain JWB57_03230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JWB57_03230 PF03129 Anticodon binding domain JWB57_03235 PF00873 AcrB/AcrD/AcrF family JWB57_03250 PF00072 Response regulator receiver domain JWB57_03255 PF00072 Response regulator receiver domain JWB57_03260 PF01584 CheW-like domain JWB57_03265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JWB57_03265 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JWB57_03270 PF01627 Hpt domain JWB57_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_03270 PF00072 Response regulator receiver domain JWB57_03270 PF01584 CheW-like domain JWB57_03280 PF06969 HemN C-terminal domain JWB57_03280 PF04055 Radical SAM superfamily JWB57_03290 PF07687 Peptidase dimerisation domain JWB57_03290 PF01546 Peptidase family M20/M25/M40 JWB57_03295 PF08085 Entericidin EcnA/B family JWB57_03305 PF04304 Protein of unknown function (DUF454) JWB57_03310 PF17969 L,D-transpeptidase C-terminal domain JWB57_03310 PF03734 L,D-transpeptidase catalytic domain JWB57_03350 PF00667 FAD binding domain JWB57_03350 PF00258 Flavodoxin JWB57_03350 PF00175 Oxidoreductase NAD-binding domain JWB57_03360 PF12805 FUSC-like inner membrane protein yccS JWB57_03365 PF07690 Major Facilitator Superfamily JWB57_03370 PF00881 Nitroreductase family JWB57_03390 PF01734 Patatin-like phospholipase JWB57_03395 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_03395 PF13291 ACT domain JWB57_03400 PF05992 SbmA/BacA-like family JWB57_03425 PF02637 GatB domain JWB57_03425 PF02934 GatB/GatE catalytic domain JWB57_03430 PF01425 Amidase JWB57_03435 PF02686 Glu-tRNAGln amidotransferase C subunit JWB57_03445 PF04085 rod shape-determining protein MreC JWB57_03450 PF04093 rod shape-determining protein MreD JWB57_03455 PF02545 Maf-like protein JWB57_03460 PF10150 Ribonuclease E/G family JWB57_03460 PF00575 S1 RNA binding domain JWB57_03470 PF06974 Protein of unknown function (DUF1298) JWB57_03470 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JWB57_03475 PF01507 Phosphoadenosine phosphosulfate reductase family JWB57_03490 PF02525 Flavodoxin-like fold JWB57_03510 PF02673 Bacitracin resistance protein BacA JWB57_03515 PF12833 Helix-turn-helix domain JWB57_03515 PF06719 AraC-type transcriptional regulator N-terminus JWB57_03520 PF08659 KR domain JWB57_03520 PF02801 Beta-ketoacyl synthase, C-terminal domain JWB57_03520 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_03520 PF16197 Ketoacyl-synthetase C-terminal extension JWB57_03520 PF09277 Erythronolide synthase, docking JWB57_03520 PF00698 Acyl transferase domain JWB57_03520 PF00109 Beta-ketoacyl synthase, N-terminal domain JWB57_03520 PF08990 Erythronolide synthase docking JWB57_03520 PF14765 Polyketide synthase dehydratase JWB57_03520 PF00550 Phosphopantetheine attachment site JWB57_03525 PF01965 DJ-1/PfpI family JWB57_03585 PF12161 HsdM N-terminal domain JWB57_03585 PF02384 N-6 DNA Methylase JWB57_03620 PF00772 DnaB-like helicase N terminal domain JWB57_03620 PF03796 DnaB-like helicase C terminal domain JWB57_03620 PF14528 LAGLIDADG-like domain JWB57_03665 PF00149 Calcineurin-like phosphoesterase JWB57_03845 PF03869 Arc-like DNA binding domain JWB57_03915 PF13356 Arm DNA-binding domain JWB57_03915 PF00589 Phage integrase family JWB57_03925 PF00324 Amino acid permease JWB57_03930 PF04303 PrpF protein JWB57_03935 PF00348 Polyprenyl synthetase JWB57_03940 PF04237 YjbR JWB57_03945 PF01145 SPFH domain / Band 7 family JWB57_03955 PF01734 Patatin-like phospholipase JWB57_03975 PF08019 Phosphoethanolamine transferase EptA/EptB JWB57_03975 PF00884 Sulfatase JWB57_03980 PF00486 Transcriptional regulatory protein, C terminal JWB57_03980 PF00072 Response regulator receiver domain JWB57_03985 PF00512 His Kinase A (phospho-acceptor) domain JWB57_03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_03985 PF08521 Two-component sensor kinase N-terminal JWB57_03995 PF00909 Ammonium Transporter Family JWB57_04000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_04000 PF03466 LysR substrate binding domain JWB57_04020 PF08264 Anticodon-binding domain of tRNA JWB57_04020 PF00133 tRNA synthetases class I (I, L, M and V) JWB57_04020 PF10458 Valyl tRNA synthetase tRNA binding arm JWB57_04040 PF01906 Putative heavy-metal-binding JWB57_04045 PF01906 Putative heavy-metal-binding JWB57_04050 PF02321 Outer membrane efflux protein JWB57_04055 PF00873 AcrB/AcrD/AcrF family JWB57_04060 PF00529 HlyD membrane-fusion protein of T1SS JWB57_04060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JWB57_04065 PF01569 PAP2 superfamily JWB57_04075 PF00348 Polyprenyl synthetase JWB57_04085 PF00829 Ribosomal prokaryotic L21 protein JWB57_04090 PF01016 Ribosomal L27 protein JWB57_04095 PF03548 Outer membrane lipoprotein carrier protein LolA JWB57_04105 PF02403 Seryl-tRNA synthetase N-terminal domain JWB57_04105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JWB57_04110 PF10414 Sirohaem synthase dimerisation region JWB57_04110 PF14824 Sirohaem biosynthesis protein central JWB57_04110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JWB57_04115 PF00588 SpoU rRNA Methylase family JWB57_04120 PF01638 HxlR-like helix-turn-helix JWB57_04125 PF03358 NADPH-dependent FMN reductase JWB57_04130 PF13520 Amino acid permease JWB57_04135 PF00465 Iron-containing alcohol dehydrogenase JWB57_04145 PF03099 Biotin/lipoate A/B protein ligase family JWB57_04150 PF04359 Protein of unknown function (DUF493) JWB57_04155 PF04539 Sigma-70 region 3 JWB57_04155 PF04545 Sigma-70, region 4 JWB57_04155 PF04546 Sigma-70, non-essential region JWB57_04155 PF03979 Sigma-70 factor, region 1.1 JWB57_04155 PF00140 Sigma-70 factor, region 1.2 JWB57_04155 PF04542 Sigma-70 region 2 JWB57_04170 PF00581 Rhodanese-like domain JWB57_04170 PF17773 UPF0176 acylphosphatase like domain JWB57_04180 PF00285 Citrate synthase, C-terminal domain JWB57_04185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JWB57_04190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JWB57_04195 PF00890 FAD binding domain JWB57_04195 PF02910 Fumarate reductase flavoprotein C-term JWB57_04200 PF13085 2Fe-2S iron-sulfur cluster binding domain JWB57_04215 PF16078 2-oxoglutarate dehydrogenase N-terminus JWB57_04215 PF00676 Dehydrogenase E1 component JWB57_04215 PF16870 2-oxoglutarate dehydrogenase C-terminal JWB57_04215 PF02779 Transketolase, pyrimidine binding domain JWB57_04220 PF00364 Biotin-requiring enzyme JWB57_04220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JWB57_04220 PF02817 e3 binding domain JWB57_04225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JWB57_04225 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_04230 PF08442 ATP-grasp domain JWB57_04230 PF00549 CoA-ligase JWB57_04235 PF02629 CoA binding domain JWB57_04235 PF00549 CoA-ligase JWB57_04250 PF00579 tRNA synthetases class I (W and Y) JWB57_04255 PF05661 Protein of unknown function (DUF808) JWB57_04260 PF04228 Putative neutral zinc metallopeptidase JWB57_04265 PF00999 Sodium/hydrogen exchanger family JWB57_04280 PF09587 Bacterial capsule synthesis protein PGA_cap JWB57_04290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JWB57_04295 PF00582 Universal stress protein family JWB57_04300 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_04305 PF03449 Transcription elongation factor, N-terminal JWB57_04305 PF01272 Transcription elongation factor, GreA/GreB, C-term JWB57_04310 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JWB57_04310 PF02142 MGS-like domain JWB57_04310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JWB57_04315 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JWB57_04315 PF00117 Glutamine amidotransferase class-I JWB57_04330 PF01985 CRS1 / YhbY (CRM) domain JWB57_04335 PF01728 FtsJ-like methyltransferase JWB57_04340 PF01434 Peptidase family M41 JWB57_04340 PF06480 FtsH Extracellular JWB57_04340 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_04340 PF17862 AAA+ lid domain JWB57_04345 PF00809 Pterin binding enzyme JWB57_04365 PF09423 PhoD-like phosphatase JWB57_04365 PF16655 PhoD-like phosphatase, N-terminal domain JWB57_04380 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JWB57_04380 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JWB57_04395 PF00083 Sugar (and other) transporter JWB57_04400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JWB57_04400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JWB57_04405 PF01266 FAD dependent oxidoreductase JWB57_04405 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JWB57_04410 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JWB57_04410 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JWB57_04415 PF00781 Diacylglycerol kinase catalytic domain JWB57_04420 PF00149 Calcineurin-like phosphoesterase JWB57_04430 PF00166 Chaperonin 10 Kd subunit JWB57_04435 PF00118 TCP-1/cpn60 chaperonin family JWB57_04440 PF01219 Prokaryotic diacylglycerol kinase JWB57_04445 PF00753 Metallo-beta-lactamase superfamily JWB57_04450 PF03009 Glycerophosphoryl diester phosphodiesterase family JWB57_04455 PF00873 AcrB/AcrD/AcrF family JWB57_04465 PF01435 Peptidase family M48 JWB57_04470 PF01464 Transglycosylase SLT domain JWB57_04475 PF01171 PP-loop family JWB57_04485 PF00497 Bacterial extracellular solute-binding proteins, family 3 JWB57_04485 PF01464 Transglycosylase SLT domain JWB57_04490 PF01272 Transcription elongation factor, GreA/GreB, C-term JWB57_04490 PF03449 Transcription elongation factor, N-terminal JWB57_04505 PF00550 Phosphopantetheine attachment site JWB57_04505 PF00975 Thioesterase domain JWB57_04505 PF13193 AMP-binding enzyme C-terminal domain JWB57_04505 PF00501 AMP-binding enzyme JWB57_04505 PF00668 Condensation domain JWB57_04520 PF00881 Nitroreductase family JWB57_04535 PF02595 Glycerate kinase family JWB57_04540 PF00384 Molybdopterin oxidoreductase JWB57_04545 PF02634 FdhD/NarQ family JWB57_04550 PF06803 Protein of unknown function (DUF1232) JWB57_04555 PF11890 Domain of unknown function (DUF3410) JWB57_04555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JWB57_04555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JWB57_04560 PF00152 tRNA synthetases class II (D, K and N) JWB57_04570 PF18073 Rubredoxin metal binding domain JWB57_04575 PF00324 Amino acid permease JWB57_04585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JWB57_04585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JWB57_04590 PF01678 Diaminopimelate epimerase JWB57_04595 PF00561 alpha/beta hydrolase fold JWB57_04600 PF01810 LysE type translocator JWB57_04605 PF02899 Phage integrase, N-terminal SAM-like domain JWB57_04605 PF00589 Phage integrase family JWB57_04610 PF01012 Electron transfer flavoprotein domain JWB57_04615 PF00766 Electron transfer flavoprotein FAD-binding domain JWB57_04615 PF01012 Electron transfer flavoprotein domain JWB57_04620 PF03989 DNA gyrase C-terminal domain, beta-propeller JWB57_04620 PF00521 DNA gyrase/topoisomerase IV, subunit A JWB57_04635 PF00535 Glycosyl transferase family 2 JWB57_04655 PF13533 Biotin-lipoyl like JWB57_04665 PF00266 Aminotransferase class-V JWB57_04680 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JWB57_04690 PF02687 FtsX-like permease family JWB57_04690 PF12704 MacB-like periplasmic core domain JWB57_04695 PF00005 ABC transporter JWB57_04700 PF03772 Competence protein JWB57_04700 PF13567 Domain of unknown function (DUF4131) JWB57_04700 PF00753 Metallo-beta-lactamase superfamily JWB57_04710 PF06965 Na+/H+ antiporter 1 JWB57_04710 PF01343 Peptidase family S49 JWB57_04715 PF12697 Alpha/beta hydrolase family JWB57_04720 PF00551 Formyl transferase JWB57_04725 PF00586 AIR synthase related protein, N-terminal domain JWB57_04725 PF02769 AIR synthase related protein, C-terminal domain JWB57_04730 PF01594 AI-2E family transporter JWB57_04735 PF11638 DnaA N-terminal domain JWB57_04735 PF08299 Bacterial dnaA protein helix-turn-helix JWB57_04735 PF00308 Bacterial dnaA protein JWB57_04765 PF00588 SpoU rRNA Methylase family JWB57_04765 PF08032 RNA 2'-O ribose methyltransferase substrate binding JWB57_04770 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JWB57_04780 PF00691 OmpA family JWB57_04785 PF07676 WD40-like Beta Propeller Repeat JWB57_04785 PF04052 TolB amino-terminal domain JWB57_04795 PF02472 Biopolymer transport protein ExbD/TolR JWB57_04800 PF01618 MotA/TolQ/ExbB proton channel family JWB57_04805 PF03061 Thioesterase superfamily JWB57_04810 PF07687 Peptidase dimerisation domain JWB57_04810 PF01546 Peptidase family M20/M25/M40 JWB57_04815 PF05496 Holliday junction DNA helicase RuvB P-loop domain JWB57_04815 PF17864 RuvB AAA lid domain JWB57_04815 PF05491 RuvB C-terminal winged helix domain JWB57_04820 PF01330 RuvA N terminal domain JWB57_04820 PF07499 RuvA, C-terminal domain JWB57_04825 PF01966 HD domain JWB57_04830 PF02769 AIR synthase related protein, C-terminal domain JWB57_04830 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JWB57_04830 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JWB57_04835 PF07690 Major Facilitator Superfamily JWB57_04840 PF01784 NIF3 (NGG1p interacting factor 3) JWB57_04845 PF00378 Enoyl-CoA hydratase/isomerase JWB57_04850 PF01467 Cytidylyltransferase-like JWB57_04850 PF00293 NUDIX domain JWB57_04860 PF00578 AhpC/TSA family JWB57_04875 PF06508 Queuosine biosynthesis protein QueC JWB57_04885 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_04885 PF14602 Hexapeptide repeat of succinyl-transferase JWB57_04885 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JWB57_04895 PF03466 LysR substrate binding domain JWB57_04895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_04900 PF00005 ABC transporter JWB57_04900 PF12857 TOBE-like domain JWB57_04905 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_04910 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_04925 PF01063 Amino-transferase class IV JWB57_04930 PF02618 YceG-like family JWB57_04935 PF02223 Thymidylate kinase JWB57_04945 PF00890 FAD binding domain JWB57_04945 PF02910 Fumarate reductase flavoprotein C-term JWB57_04950 PF13180 PDZ domain JWB57_04960 PF00679 Elongation factor G C-terminus JWB57_04960 PF00009 Elongation factor Tu GTP binding domain JWB57_04960 PF03144 Elongation factor Tu domain 2 JWB57_04960 PF06421 GTP-binding protein LepA C-terminus JWB57_04965 PF10502 Signal peptidase, peptidase S26 JWB57_04975 PF14622 Ribonuclease-III-like JWB57_04975 PF00035 Double-stranded RNA binding motif JWB57_04980 PF07650 KH domain JWB57_04980 PF01926 50S ribosome-binding GTPase JWB57_04990 PF11967 Recombination protein O N terminal JWB57_04990 PF02565 Recombination protein O C terminal JWB57_04995 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JWB57_05000 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JWB57_05005 PF00106 short chain dehydrogenase JWB57_05035 PF00155 Aminotransferase class I and II JWB57_05045 PF17151 Periplasmic sensor domain JWB57_05045 PF00990 Diguanylate cyclase, GGDEF domain JWB57_05055 PF00271 Helicase conserved C-terminal domain JWB57_05055 PF17757 UvrB interaction domain JWB57_05055 PF12344 Ultra-violet resistance protein B JWB57_05055 PF04851 Type III restriction enzyme, res subunit JWB57_05055 PF02151 UvrB/uvrC motif JWB57_05065 PF00892 EamA-like transporter family JWB57_05070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JWB57_05070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JWB57_05085 PF01926 50S ribosome-binding GTPase JWB57_05085 PF01018 GTP1/OBG JWB57_05090 PF00696 Amino acid kinase family JWB57_05090 PF01472 PUA domain JWB57_05100 PF07759 Protein of unknown function (DUF1615) JWB57_05105 PF01207 Dihydrouridine synthase (Dus) JWB57_05110 PF03060 Nitronate monooxygenase JWB57_05125 PF02350 UDP-N-acetylglucosamine 2-epimerase JWB57_05155 PF00875 DNA photolyase JWB57_05155 PF03441 FAD binding domain of DNA photolyase JWB57_05160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JWB57_05165 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_05170 PF00768 D-alanyl-D-alanine carboxypeptidase JWB57_05170 PF07943 Penicillin-binding protein 5, C-terminal domain JWB57_05180 PF03971 Monomeric isocitrate dehydrogenase JWB57_05185 PF00849 RNA pseudouridylate synthase JWB57_05190 PF00180 Isocitrate/isopropylmalate dehydrogenase JWB57_05210 PF06779 Uncharacterised MFS-type transporter YbfB JWB57_05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_05215 PF03466 LysR substrate binding domain JWB57_05220 PF00375 Sodium:dicarboxylate symporter family JWB57_05225 PF02567 Phenazine biosynthesis-like protein JWB57_05230 PF00675 Insulinase (Peptidase family M16) JWB57_05230 PF05193 Peptidase M16 inactive domain JWB57_05255 PF01867 CRISPR associated protein Cas1 JWB57_05265 PF09611 CRISPR-associated protein (Cas_Csy1) JWB57_05270 PF09614 CRISPR-associated protein (Cas_Csy2) JWB57_05275 PF09615 CRISPR-associated protein (Cas_Csy3) JWB57_05285 PF02581 Thiamine monophosphate synthase JWB57_05290 PF00202 Aminotransferase class-III JWB57_05300 PF00849 RNA pseudouridylate synthase JWB57_05305 PF18337 RapA N-terminal Tudor like domain JWB57_05305 PF12137 RNA polymerase recycling family C-terminal JWB57_05305 PF00176 SNF2 family N-terminal domain JWB57_05305 PF18339 RapA N-terminal Tudor like domain 1 JWB57_05305 PF00271 Helicase conserved C-terminal domain JWB57_05315 PF00440 Bacterial regulatory proteins, tetR family JWB57_05320 PF00970 Oxidoreductase FAD-binding domain JWB57_05320 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_05320 PF00175 Oxidoreductase NAD-binding domain JWB57_05325 PF00487 Fatty acid desaturase JWB57_05335 PF17754 MftR C-terminal domain JWB57_05335 PF00440 Bacterial regulatory proteins, tetR family JWB57_05345 PF00202 Aminotransferase class-III JWB57_05350 PF00282 Pyridoxal-dependent decarboxylase conserved domain JWB57_05355 PF00171 Aldehyde dehydrogenase family JWB57_05360 PF01037 Lrp/AsnC ligand binding domain JWB57_05365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JWB57_05365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JWB57_05365 PF00205 Thiamine pyrophosphate enzyme, central domain JWB57_05370 PF00324 Amino acid permease JWB57_05375 PF12849 PBP superfamily domain JWB57_05380 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_05385 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_05390 PF00005 ABC transporter JWB57_05395 PF01343 Peptidase family S49 JWB57_05395 PF08496 Peptidase family S49 N-terminal JWB57_05410 PF08328 Adenylosuccinate lyase C-terminal JWB57_05410 PF00206 Lyase JWB57_05415 PF04356 Protein of unknown function (DUF489) JWB57_05425 PF13344 Haloacid dehalogenase-like hydrolase JWB57_05425 PF00293 NUDIX domain JWB57_05430 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_05435 PF00768 D-alanyl-D-alanine carboxypeptidase JWB57_05435 PF07943 Penicillin-binding protein 5, C-terminal domain JWB57_05450 PF01975 Survival protein SurE JWB57_05455 PF01476 LysM domain JWB57_05455 PF01551 Peptidase family M23 JWB57_05460 PF03466 LysR substrate binding domain JWB57_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_05465 PF13654 AAA domain JWB57_05465 PF05362 Lon protease (S16) C-terminal proteolytic domain JWB57_05470 PF07690 Major Facilitator Superfamily JWB57_05475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JWB57_05480 PF13593 SBF-like CPA transporter family (DUF4137) JWB57_05485 PF01197 Ribosomal protein L31 JWB57_05490 PF12792 CSS motif domain associated with EAL JWB57_05490 PF00563 EAL domain JWB57_05500 PF04055 Radical SAM superfamily JWB57_05505 PF09285 Elongation factor P, C-terminal JWB57_05505 PF08207 Elongation factor P (EF-P) KOW-like domain JWB57_05505 PF01132 Elongation factor P (EF-P) OB domain JWB57_05510 PF02554 Carbon starvation protein CstA JWB57_05510 PF13722 5TM C-terminal transporter carbon starvation CstA JWB57_05515 PF04328 Selenoprotein, putative JWB57_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_05525 PF03466 LysR substrate binding domain JWB57_05530 PF00557 Metallopeptidase family M24 JWB57_05535 PF02028 BCCT, betaine/carnitine/choline family transporter JWB57_05540 PF02028 BCCT, betaine/carnitine/choline family transporter JWB57_05545 PF00355 Rieske [2Fe-2S] domain JWB57_05545 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JWB57_05550 PF00171 Aldehyde dehydrogenase family JWB57_05555 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_05555 PF18113 Rubredoxin binding C-terminal domain JWB57_05560 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JWB57_05560 PF01266 FAD dependent oxidoreductase JWB57_05580 PF00892 EamA-like transporter family JWB57_05590 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JWB57_05620 PF02678 Pirin JWB57_05620 PF17954 Quercetinase C-terminal cupin domain JWB57_05625 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_05630 PF13309 HTH domain JWB57_05630 PF08348 YheO-like PAS domain JWB57_05640 PF00501 AMP-binding enzyme JWB57_05640 PF00668 Condensation domain JWB57_05640 PF00550 Phosphopantetheine attachment site JWB57_05640 PF13193 AMP-binding enzyme C-terminal domain JWB57_05645 PF00975 Thioesterase domain JWB57_05645 PF00550 Phosphopantetheine attachment site JWB57_05645 PF00501 AMP-binding enzyme JWB57_05645 PF13193 AMP-binding enzyme C-terminal domain JWB57_05645 PF00668 Condensation domain JWB57_05650 PF01032 FecCD transport family JWB57_05655 PF01032 FecCD transport family JWB57_05660 PF00005 ABC transporter JWB57_05665 PF01497 Periplasmic binding protein JWB57_05670 PF07715 TonB-dependent Receptor Plug Domain JWB57_05670 PF00593 TonB dependent receptor JWB57_05675 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JWB57_05680 PF00501 AMP-binding enzyme JWB57_05680 PF00550 Phosphopantetheine attachment site JWB57_05680 PF00668 Condensation domain JWB57_05685 PF00501 AMP-binding enzyme JWB57_05685 PF13193 AMP-binding enzyme C-terminal domain JWB57_05690 PF00857 Isochorismatase family JWB57_05690 PF00550 Phosphopantetheine attachment site JWB57_05695 PF00282 Pyridoxal-dependent decarboxylase conserved domain JWB57_05700 PF00664 ABC transporter transmembrane region JWB57_05700 PF00005 ABC transporter JWB57_05705 PF00005 ABC transporter JWB57_05710 PF00975 Thioesterase domain JWB57_05720 PF00425 chorismate binding enzyme JWB57_05730 PF01208 Uroporphyrinogen decarboxylase (URO-D) JWB57_05735 PF05675 Protein of unknown function (DUF817) JWB57_05750 PF00144 Beta-lactamase JWB57_05755 PF01227 GTP cyclohydrolase I JWB57_05760 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_05760 PF01799 [2Fe-2S] binding domain JWB57_05765 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JWB57_05765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JWB57_05780 PF00218 Indole-3-glycerol phosphate synthase JWB57_05785 PF02885 Glycosyl transferase family, helical bundle domain JWB57_05785 PF00591 Glycosyl transferase family, a/b domain JWB57_05790 PF07715 TonB-dependent Receptor Plug Domain JWB57_05790 PF00593 TonB dependent receptor JWB57_05800 PF00117 Glutamine amidotransferase class-I JWB57_05810 PF00854 POT family JWB57_05815 PF00120 Glutamine synthetase, catalytic domain JWB57_05815 PF03951 Glutamine synthetase, beta-Grasp domain JWB57_05820 PF04345 Chorismate lyase JWB57_05825 PF01040 UbiA prenyltransferase family JWB57_05860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JWB57_05860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JWB57_05865 PF01784 NIF3 (NGG1p interacting factor 3) JWB57_05870 PF13180 PDZ domain JWB57_05875 PF01743 Poly A polymerase head domain JWB57_05875 PF12627 Probable RNA and SrmB- binding site of polymerase A JWB57_05880 PF00390 Malic enzyme, N-terminal domain JWB57_05880 PF03949 Malic enzyme, NAD binding domain JWB57_05880 PF01515 Phosphate acetyl/butaryl transferase JWB57_05885 PF03707 Bacterial signalling protein N terminal repeat JWB57_05885 PF00990 Diguanylate cyclase, GGDEF domain JWB57_05885 PF00563 EAL domain JWB57_05890 PF04452 RNA methyltransferase JWB57_05895 PF02219 Methylenetetrahydrofolate reductase JWB57_05900 PF05221 S-adenosyl-L-homocysteine hydrolase JWB57_05900 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JWB57_05915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_05915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_05915 PF09317 Domain of unknown function (DUF1974) JWB57_05920 PF04055 Radical SAM superfamily JWB57_05925 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_05925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JWB57_05935 PF07690 Major Facilitator Superfamily JWB57_05945 PF00557 Metallopeptidase family M24 JWB57_05950 PF00318 Ribosomal protein S2 JWB57_05955 PF00889 Elongation factor TS JWB57_05965 PF12833 Helix-turn-helix domain JWB57_05985 PF03330 Lytic transglycolase JWB57_05985 PF05036 Sporulation related domain JWB57_05990 PF13406 Transglycosylase SLT domain JWB57_05995 PF01098 Cell cycle protein JWB57_06005 PF14489 QueF-like protein JWB57_06005 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JWB57_06010 PF01061 ABC-2 type transporter JWB57_06015 PF00005 ABC transporter JWB57_06020 PF00589 Phage integrase family JWB57_06060 PF12684 PDDEXK-like domain of unknown function (DUF3799) JWB57_06060 PF06630 Enterobacterial exodeoxyribonuclease VIII JWB57_06120 PF00772 DnaB-like helicase N terminal domain JWB57_06120 PF03796 DnaB-like helicase C terminal domain JWB57_06335 PF01476 LysM domain JWB57_06335 PF08525 Opacity-associated protein A N-terminal motif JWB57_06335 PF01551 Peptidase family M23 JWB57_06425 PF00464 Serine hydroxymethyltransferase JWB57_06430 PF02321 Outer membrane efflux protein JWB57_06435 PF00873 AcrB/AcrD/AcrF family JWB57_06440 PF13533 Biotin-lipoyl like JWB57_06445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_06445 PF03466 LysR substrate binding domain JWB57_06450 PF00497 Bacterial extracellular solute-binding proteins, family 3 JWB57_06455 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_06460 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_06470 PF00893 Small Multidrug Resistance protein JWB57_06475 PF00037 4Fe-4S binding domain JWB57_06480 PF01136 Peptidase family U32 JWB57_06480 PF16325 Peptidase family U32 C-terminal domain JWB57_06485 PF00392 Bacterial regulatory proteins, gntR family JWB57_06485 PF00155 Aminotransferase class I and II JWB57_06490 PF02567 Phenazine biosynthesis-like protein JWB57_06495 PF00970 Oxidoreductase FAD-binding domain JWB57_06495 PF00175 Oxidoreductase NAD-binding domain JWB57_06500 PF18389 TrmO C-terminal domain JWB57_06500 PF01980 tRNA-methyltransferase O JWB57_06510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JWB57_06510 PF00437 Type II/IV secretion system protein JWB57_06520 PF00072 Response regulator receiver domain JWB57_06520 PF00486 Transcriptional regulatory protein, C terminal JWB57_06525 PF00512 His Kinase A (phospho-acceptor) domain JWB57_06525 PF08521 Two-component sensor kinase N-terminal JWB57_06525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_06535 PF00293 NUDIX domain JWB57_06545 PF00912 Transglycosylase JWB57_06545 PF00905 Penicillin binding protein transpeptidase domain JWB57_06545 PF14814 Bifunctional transglycosylase second domain JWB57_06550 PF01513 ATP-NAD kinase JWB57_06555 PF07023 Protein of unknown function (DUF1315) JWB57_06560 PF02885 Glycosyl transferase family, helical bundle domain JWB57_06560 PF00591 Glycosyl transferase family, a/b domain JWB57_06565 PF00375 Sodium:dicarboxylate symporter family JWB57_06570 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_06570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_06570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_06575 PF00756 Putative esterase JWB57_06580 PF01817 Chorismate mutase type II JWB57_06580 PF01842 ACT domain JWB57_06580 PF00800 Prephenate dehydratase JWB57_06585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JWB57_06595 PF01546 Peptidase family M20/M25/M40 JWB57_06595 PF07687 Peptidase dimerisation domain JWB57_06600 PF00753 Metallo-beta-lactamase superfamily JWB57_06610 PF03883 Peroxide stress protein YaaA JWB57_06615 PF05690 Thiazole biosynthesis protein ThiG JWB57_06625 PF04241 Protein of unknown function (DUF423) JWB57_06630 PF04542 Sigma-70 region 2 JWB57_06630 PF00140 Sigma-70 factor, region 1.2 JWB57_06630 PF04545 Sigma-70, region 4 JWB57_06640 PF00313 'Cold-shock' DNA-binding domain JWB57_06645 PF00270 DEAD/DEAH box helicase JWB57_06645 PF00271 Helicase conserved C-terminal domain JWB57_06655 PF00881 Nitroreductase family JWB57_06660 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JWB57_06660 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JWB57_06670 PF00589 Phage integrase family JWB57_06675 PF00872 Transposase, Mutator family JWB57_06750 PF00717 Peptidase S24-like JWB57_06875 PF00583 Acetyltransferase (GNAT) family JWB57_06955 PF01180 Dihydroorotate dehydrogenase JWB57_06960 PF02674 Colicin V production protein JWB57_06965 PF00156 Phosphoribosyl transferase domain JWB57_06980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JWB57_06980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JWB57_06985 PF01435 Peptidase family M48 JWB57_06990 PF09424 Yqey-like protein JWB57_06995 PF01165 Ribosomal protein S21 JWB57_07000 PF00814 Glycoprotease family JWB57_07020 PF00069 Protein kinase domain JWB57_07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_07035 PF03466 LysR substrate binding domain JWB57_07040 PF00202 Aminotransferase class-III JWB57_07045 PF00171 Aldehyde dehydrogenase family JWB57_07050 PF00324 Amino acid permease JWB57_07080 PF04076 Bacterial OB fold (BOF) protein JWB57_07105 PF00561 alpha/beta hydrolase fold JWB57_07110 PF03616 Sodium/glutamate symporter JWB57_07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_07120 PF03466 LysR substrate binding domain JWB57_07125 PF00248 Aldo/keto reductase family JWB57_07130 PF00106 short chain dehydrogenase JWB57_07145 PF07729 FCD domain JWB57_07145 PF00392 Bacterial regulatory proteins, gntR family JWB57_07200 PF08946 Osmosensory transporter coiled coil JWB57_07200 PF00083 Sugar (and other) transporter JWB57_07225 PF04403 Paraquat-inducible protein A JWB57_07230 PF02470 MlaD protein JWB57_07240 PF00576 HIUase/Transthyretin family JWB57_07250 PF00486 Transcriptional regulatory protein, C terminal JWB57_07250 PF00072 Response regulator receiver domain JWB57_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_07255 PF00672 HAMP domain JWB57_07255 PF00512 His Kinase A (phospho-acceptor) domain JWB57_07295 PF08521 Two-component sensor kinase N-terminal JWB57_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_07295 PF00512 His Kinase A (phospho-acceptor) domain JWB57_07300 PF00486 Transcriptional regulatory protein, C terminal JWB57_07300 PF00072 Response regulator receiver domain JWB57_07320 PF01177 Asp/Glu/Hydantoin racemase JWB57_07325 PF00892 EamA-like transporter family JWB57_07330 PF07995 Glucose / Sorbosone dehydrogenase JWB57_07350 PF00375 Sodium:dicarboxylate symporter family JWB57_07360 PF16123 Hydroxyacylglutathione hydrolase C-terminus JWB57_07360 PF00753 Metallo-beta-lactamase superfamily JWB57_07365 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_07370 PF00005 ABC transporter JWB57_07370 PF09383 NIL domain JWB57_07375 PF03180 NLPA lipoprotein JWB57_07380 PF02844 Phosphoribosylglycinamide synthetase, N domain JWB57_07380 PF02843 Phosphoribosylglycinamide synthetase, C domain JWB57_07380 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JWB57_07385 PF02142 MGS-like domain JWB57_07385 PF01808 AICARFT/IMPCHase bienzyme JWB57_07390 PF02954 Bacterial regulatory protein, Fis family JWB57_07410 PF01134 Glucose inhibited division protein A JWB57_07410 PF13932 GidA associated domain JWB57_07420 PF14403 Circularly permuted ATP-grasp type 2 JWB57_07430 PF01841 Transglutaminase-like superfamily JWB57_07430 PF08379 Bacterial transglutaminase-like N-terminal region JWB57_07440 PF01168 Alanine racemase, N-terminal domain JWB57_07440 PF00842 Alanine racemase, C-terminal domain JWB57_07445 PF00772 DnaB-like helicase N terminal domain JWB57_07445 PF03796 DnaB-like helicase C terminal domain JWB57_07450 PF01281 Ribosomal protein L9, N-terminal domain JWB57_07450 PF03948 Ribosomal protein L9, C-terminal domain JWB57_07455 PF01084 Ribosomal protein S18 JWB57_07460 PF01250 Ribosomal protein S6 JWB57_07465 PF01040 UbiA prenyltransferase family JWB57_07470 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JWB57_07475 PF00510 Cytochrome c oxidase subunit III JWB57_07480 PF00115 Cytochrome C and Quinol oxidase polypeptide I JWB57_07485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JWB57_07485 PF06481 COX Aromatic Rich Motif JWB57_07495 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JWB57_07495 PF02896 PEP-utilising enzyme, TIM barrel domain JWB57_07495 PF00391 PEP-utilising enzyme, mobile domain JWB57_07500 PF03618 Kinase/pyrophosphorylase JWB57_07510 PF14883 Hypothetical glycosyl hydrolase family 13 JWB57_07510 PF01522 Polysaccharide deacetylase JWB57_07515 PF00535 Glycosyl transferase family 2 JWB57_07520 PF13994 PgaD-like protein JWB57_07530 PF00296 Luciferase-like monooxygenase JWB57_07545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_07545 PF03466 LysR substrate binding domain JWB57_07555 PF03462 PCRF domain JWB57_07555 PF00472 RF-1 domain JWB57_07560 PF13847 Methyltransferase domain JWB57_07560 PF17827 PrmC N-terminal domain JWB57_07565 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_07570 PF09084 NMT1/THI5 like JWB57_07575 PF12833 Helix-turn-helix domain JWB57_07580 PF00106 short chain dehydrogenase JWB57_07585 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_07585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_07585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_07590 PF00501 AMP-binding enzyme JWB57_07590 PF13193 AMP-binding enzyme C-terminal domain JWB57_07595 PF01613 Flavin reductase like domain JWB57_07600 PF00899 ThiF family JWB57_07605 PF03109 ABC1 family JWB57_07620 PF03814 Potassium-transporting ATPase A subunit JWB57_07630 PF02669 K+-transporting ATPase, c chain JWB57_07635 PF13493 Domain of unknown function (DUF4118) JWB57_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_07635 PF00512 His Kinase A (phospho-acceptor) domain JWB57_07635 PF02702 Osmosensitive K+ channel His kinase sensor domain JWB57_07640 PF00072 Response regulator receiver domain JWB57_07640 PF00486 Transcriptional regulatory protein, C terminal JWB57_07645 PF00120 Glutamine synthetase, catalytic domain JWB57_07655 PF03232 Ubiquinone biosynthesis protein COQ7 JWB57_07660 PF07690 Major Facilitator Superfamily JWB57_07665 PF01103 Surface antigen JWB57_07665 PF07244 Surface antigen variable number repeat JWB57_07665 PF17243 POTRA domain TamA domain 1 JWB57_07680 PF00330 Aconitase family (aconitate hydratase) JWB57_07680 PF06434 Aconitate hydratase 2 N-terminus JWB57_07680 PF11791 Aconitate B N-terminal domain JWB57_07690 PF00027 Cyclic nucleotide-binding domain JWB57_07690 PF00520 Ion transport protein JWB57_07695 PF07690 Major Facilitator Superfamily JWB57_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_07710 PF03466 LysR substrate binding domain JWB57_07715 PF04284 Protein of unknown function (DUF441) JWB57_07725 PF01479 S4 domain JWB57_07725 PF00849 RNA pseudouridylate synthase JWB57_07740 PF00849 RNA pseudouridylate synthase JWB57_07740 PF01479 S4 domain JWB57_07745 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JWB57_07750 PF08676 MutL C terminal dimerisation domain JWB57_07750 PF01119 DNA mismatch repair protein, C-terminal domain JWB57_07760 PF17209 Hfq protein JWB57_07770 PF00881 Nitroreductase family JWB57_07780 PF00149 Calcineurin-like phosphoesterase JWB57_07785 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JWB57_07790 PF00749 tRNA synthetases class I (E and Q), catalytic domain JWB57_07790 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JWB57_07795 PF00958 GMP synthase C terminal domain JWB57_07795 PF02540 NAD synthase JWB57_07795 PF00117 Glutamine amidotransferase class-I JWB57_07800 PF05985 Ethanolamine ammonia-lyase light chain (EutC) JWB57_07805 PF06751 Ethanolamine ammonia lyase large subunit (EutB) JWB57_07810 PF13520 Amino acid permease JWB57_07815 PF00171 Aldehyde dehydrogenase family JWB57_07830 PF00465 Iron-containing alcohol dehydrogenase JWB57_07835 PF05970 PIF1-like helicase JWB57_07835 PF14493 Helix-turn-helix domain JWB57_07845 PF02110 Hydroxyethylthiazole kinase family JWB57_07860 PF11940 Domain of unknown function (DUF3458) Ig-like fold JWB57_07860 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JWB57_07860 PF01433 Peptidase family M1 domain JWB57_07875 PF13953 PapC C-terminal domain JWB57_07875 PF13954 PapC N-terminal domain JWB57_07875 PF00577 Outer membrane usher protein JWB57_07900 PF01817 Chorismate mutase type II JWB57_07905 PF01037 Lrp/AsnC ligand binding domain JWB57_07920 PF00440 Bacterial regulatory proteins, tetR family JWB57_07925 PF07715 TonB-dependent Receptor Plug Domain JWB57_07925 PF00593 TonB dependent receptor JWB57_07930 PF00924 Mechanosensitive ion channel JWB57_07960 PF07715 TonB-dependent Receptor Plug Domain JWB57_07960 PF00593 TonB dependent receptor JWB57_07980 PF00005 ABC transporter JWB57_07980 PF12848 ABC transporter JWB57_07985 PF00582 Universal stress protein family JWB57_08000 PF00690 Cation transporter/ATPase, N-terminus JWB57_08000 PF00689 Cation transporting ATPase, C-terminus JWB57_08005 PF02308 MgtC family JWB57_08010 PF03594 Benzoate membrane transport protein JWB57_08015 PF01037 Lrp/AsnC ligand binding domain JWB57_08020 PF01810 LysE type translocator JWB57_08025 PF00923 Transaldolase/Fructose-6-phosphate aldolase JWB57_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_08030 PF03466 LysR substrate binding domain JWB57_08040 PF00108 Thiolase, N-terminal domain JWB57_08040 PF02803 Thiolase, C-terminal domain JWB57_08050 PF01575 MaoC like domain JWB57_08055 PF00144 Beta-lactamase JWB57_08065 PF07690 Major Facilitator Superfamily JWB57_08070 PF12169 DNA polymerase III subunits gamma and tau domain III JWB57_08070 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JWB57_08070 PF12170 DNA polymerase III tau subunit V interacting with alpha JWB57_08075 PF04185 Phosphoesterase family JWB57_08075 PF05506 Domain of unknown function (DUF756) JWB57_08080 PF03061 Thioesterase superfamily JWB57_08085 PF00465 Iron-containing alcohol dehydrogenase JWB57_08095 PF01451 Low molecular weight phosphotyrosine protein phosphatase JWB57_08100 PF01565 FAD binding domain JWB57_08100 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JWB57_08115 PF01645 Conserved region in glutamate synthase JWB57_08135 PF12832 MFS_1 like family JWB57_08145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JWB57_08145 PF00289 Biotin carboxylase, N-terminal domain JWB57_08145 PF02785 Biotin carboxylase C-terminal domain JWB57_08150 PF00364 Biotin-requiring enzyme JWB57_08155 PF01220 Dehydroquinase class II JWB57_08160 PF13438 Domain of unknown function (DUF4113) JWB57_08160 PF00817 impB/mucB/samB family JWB57_08160 PF11799 impB/mucB/samB family C-terminal domain JWB57_08170 PF00005 ABC transporter JWB57_08175 PF00072 Response regulator receiver domain JWB57_08175 PF00486 Transcriptional regulatory protein, C terminal JWB57_08185 PF13806 Rieske-like [2Fe-2S] domain JWB57_08185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JWB57_08185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JWB57_08185 PF18267 Rubredoxin NAD+ reductase C-terminal domain JWB57_08185 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_08185 PF04324 BFD-like [2Fe-2S] binding domain JWB57_08190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JWB57_08190 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_08190 PF18267 Rubredoxin NAD+ reductase C-terminal domain JWB57_08190 PF04324 BFD-like [2Fe-2S] binding domain JWB57_08190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JWB57_08195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JWB57_08195 PF00384 Molybdopterin oxidoreductase JWB57_08195 PF01568 Molydopterin dinucleotide binding domain JWB57_08195 PF04324 BFD-like [2Fe-2S] binding domain JWB57_08200 PF12804 MobA-like NTP transferase domain JWB57_08205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JWB57_08205 PF00384 Molybdopterin oxidoreductase JWB57_08205 PF01568 Molydopterin dinucleotide binding domain JWB57_08210 PF06463 Molybdenum Cofactor Synthesis C JWB57_08210 PF04055 Radical SAM superfamily JWB57_08220 PF02391 MoaE protein JWB57_08225 PF00994 Probable molybdopterin binding domain JWB57_08225 PF01967 MoaC family JWB57_08230 PF03453 MoeA N-terminal region (domain I and II) JWB57_08230 PF03454 MoeA C-terminal region (domain IV) JWB57_08230 PF00994 Probable molybdopterin binding domain JWB57_08235 PF01638 HxlR-like helix-turn-helix JWB57_08240 PF00392 Bacterial regulatory proteins, gntR family JWB57_08240 PF00155 Aminotransferase class I and II JWB57_08245 PF00892 EamA-like transporter family JWB57_08265 PF02635 DsrE/DsrF-like family JWB57_08270 PF16363 GDP-mannose 4,6 dehydratase JWB57_08275 PF10415 Fumarase C C-terminus JWB57_08275 PF00206 Lyase JWB57_08295 PF01266 FAD dependent oxidoreductase JWB57_08305 PF02542 YgbB family JWB57_08315 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JWB57_08315 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JWB57_08320 PF00440 Bacterial regulatory proteins, tetR family JWB57_08325 PF00072 Response regulator receiver domain JWB57_08325 PF00158 Sigma-54 interaction domain JWB57_08325 PF02954 Bacterial regulatory protein, Fis family JWB57_08330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_08330 PF00989 PAS fold JWB57_08330 PF00512 His Kinase A (phospho-acceptor) domain JWB57_08340 PF00919 Uncharacterized protein family UPF0004 JWB57_08340 PF04055 Radical SAM superfamily JWB57_08340 PF18693 TRAM domain JWB57_08345 PF00696 Amino acid kinase family JWB57_08350 PF01765 Ribosome recycling factor JWB57_08355 PF01255 Putative undecaprenyl diphosphate synthase JWB57_08365 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JWB57_08365 PF13288 DXP reductoisomerase C-terminal domain JWB57_08365 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JWB57_08370 PF02163 Peptidase family M50 JWB57_08370 PF13180 PDZ domain JWB57_08370 PF17820 PDZ domain JWB57_08375 PF01103 Surface antigen JWB57_08375 PF07244 Surface antigen variable number repeat JWB57_08385 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_08385 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JWB57_08390 PF07977 FabA-like domain JWB57_08395 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JWB57_08395 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_08410 PF02631 RecX family JWB57_08415 PF00154 recA bacterial DNA recombination protein JWB57_08420 PF01479 S4 domain JWB57_08425 PF13419 Haloacid dehalogenase-like hydrolase JWB57_08450 PF01037 Lrp/AsnC ligand binding domain JWB57_08455 PF00266 Aminotransferase class-V JWB57_08460 PF00324 Amino acid permease JWB57_08470 PF00082 Subtilase family JWB57_08470 PF05922 Peptidase inhibitor I9 JWB57_08475 PF01740 STAS domain JWB57_08475 PF00916 Sulfate permease family JWB57_08480 PF02586 SOS response associated peptidase (SRAP) JWB57_08485 PF07995 Glucose / Sorbosone dehydrogenase JWB57_08495 PF00990 Diguanylate cyclase, GGDEF domain JWB57_08495 PF00563 EAL domain JWB57_08495 PF03707 Bacterial signalling protein N terminal repeat JWB57_08520 PF02378 Phosphotransferase system, EIIC JWB57_08520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JWB57_08525 PF00294 pfkB family carbohydrate kinase JWB57_08530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JWB57_08530 PF05524 PEP-utilising enzyme, N-terminal JWB57_08530 PF00391 PEP-utilising enzyme, mobile domain JWB57_08530 PF00381 PTS HPr component phosphorylation site JWB57_08530 PF02896 PEP-utilising enzyme, TIM barrel domain JWB57_08555 PF05525 Branched-chain amino acid transport protein JWB57_08570 PF00557 Metallopeptidase family M24 JWB57_08575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_08575 PF03466 LysR substrate binding domain JWB57_08585 PF00462 Glutaredoxin JWB57_08590 PF00202 Aminotransferase class-III JWB57_08595 PF00478 IMP dehydrogenase / GMP reductase domain JWB57_08595 PF00571 CBS domain JWB57_08620 PF02881 SRP54-type protein, helical bundle domain JWB57_08620 PF00448 SRP54-type protein, GTPase domain JWB57_08630 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JWB57_08640 PF08173 Membrane bound YbgT-like protein JWB57_08645 PF02322 Cytochrome bd terminal oxidase subunit II JWB57_08650 PF01654 Cytochrome bd terminal oxidase subunit I JWB57_08660 PF07290 Protein of unknown function (DUF1449) JWB57_08670 PF00294 pfkB family carbohydrate kinase JWB57_08675 PF07715 TonB-dependent Receptor Plug Domain JWB57_08675 PF00593 TonB dependent receptor JWB57_08680 PF08367 Peptidase M16C associated JWB57_08680 PF05193 Peptidase M16 inactive domain JWB57_08680 PF00675 Insulinase (Peptidase family M16) JWB57_08685 PF02253 Phospholipase A1 JWB57_08690 PF02386 Cation transport protein JWB57_08695 PF02254 TrkA-N domain JWB57_08695 PF02080 TrkA-C domain JWB57_08700 PF00585 C-terminal regulatory domain of Threonine dehydratase JWB57_08700 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_08705 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JWB57_08720 PF01118 Semialdehyde dehydrogenase, NAD binding domain JWB57_08720 PF02774 Semialdehyde dehydrogenase, dimerisation domain JWB57_08730 PF02617 ATP-dependent Clp protease adaptor protein ClpS JWB57_08735 PF07724 AAA domain (Cdc48 subfamily) JWB57_08735 PF17871 AAA lid domain JWB57_08735 PF02861 Clp amino terminal domain, pathogenicity island component JWB57_08735 PF10431 C-terminal, D2-small domain, of ClpB protein JWB57_08735 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_08740 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JWB57_08745 PF00793 DAHP synthetase I family JWB57_08760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_08760 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_08790 PF06418 CTP synthase N-terminus JWB57_08790 PF00117 Glutamine amidotransferase class-I JWB57_08795 PF00793 DAHP synthetase I family JWB57_08800 PF00113 Enolase, C-terminal TIM barrel domain JWB57_08800 PF03952 Enolase, N-terminal domain JWB57_08805 PF04239 Protein of unknown function (DUF421) JWB57_08810 PF04977 Septum formation initiator JWB57_08815 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JWB57_08820 PF01144 Coenzyme A transferase JWB57_08825 PF01144 Coenzyme A transferase JWB57_08830 PF02803 Thiolase, C-terminal domain JWB57_08830 PF00108 Thiolase, N-terminal domain JWB57_08835 PF00206 Lyase JWB57_08835 PF10397 Adenylosuccinate lyase C-terminus JWB57_08840 PF00561 alpha/beta hydrolase fold JWB57_08845 PF07690 Major Facilitator Superfamily JWB57_08850 PF02627 Carboxymuconolactone decarboxylase family JWB57_08855 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal JWB57_08855 PF00775 Dioxygenase JWB57_08860 PF00775 Dioxygenase JWB57_08865 PF01487 Type I 3-dehydroquinase JWB57_08870 PF05048 Periplasmic copper-binding protein (NosD) JWB57_08875 PF04966 Carbohydrate-selective porin, OprB family JWB57_08880 PF01011 PQQ enzyme repeat JWB57_08880 PF13360 PQQ-like domain JWB57_08890 PF04143 Sulphur transport JWB57_08900 PF00753 Metallo-beta-lactamase superfamily JWB57_08905 PF09339 IclR helix-turn-helix domain JWB57_08905 PF01614 Bacterial transcriptional regulator JWB57_08910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_08910 PF03466 LysR substrate binding domain JWB57_08915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_08915 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_08915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_08930 PF00106 short chain dehydrogenase JWB57_08940 PF07690 Major Facilitator Superfamily JWB57_08950 PF01425 Amidase JWB57_08955 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JWB57_08970 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JWB57_08970 PF00355 Rieske [2Fe-2S] domain JWB57_08985 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_08985 PF00175 Oxidoreductase NAD-binding domain JWB57_08990 PF01613 Flavin reductase like domain JWB57_08995 PF02311 AraC-like ligand binding domain JWB57_08995 PF12833 Helix-turn-helix domain JWB57_09000 PF01179 Copper amine oxidase, enzyme domain JWB57_09000 PF07833 Copper amine oxidase N-terminal domain JWB57_09000 PF02727 Copper amine oxidase, N2 domain JWB57_09000 PF02728 Copper amine oxidase, N3 domain JWB57_09010 PF00171 Aldehyde dehydrogenase family JWB57_09015 PF01804 Penicillin amidase JWB57_09020 PF12146 Serine aminopeptidase, S33 JWB57_09025 PF00108 Thiolase, N-terminal domain JWB57_09025 PF02803 Thiolase, C-terminal domain JWB57_09030 PF01144 Coenzyme A transferase JWB57_09035 PF01144 Coenzyme A transferase JWB57_09040 PF00775 Dioxygenase JWB57_09040 PF04444 Catechol dioxygenase N terminus JWB57_09045 PF02426 Muconolactone delta-isomerase JWB57_09050 PF13378 Enolase C-terminal domain-like JWB57_09050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JWB57_09055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_09055 PF03466 LysR substrate binding domain JWB57_09065 PF07729 FCD domain JWB57_09065 PF00392 Bacterial regulatory proteins, gntR family JWB57_09070 PF00920 Dehydratase family JWB57_09085 PF00171 Aldehyde dehydrogenase family JWB57_09095 PF00561 alpha/beta hydrolase fold JWB57_09100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_09100 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_09105 PF00106 short chain dehydrogenase JWB57_09115 PF00376 MerR family regulatory protein JWB57_09115 PF09278 MerR, DNA binding JWB57_09125 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_09135 PF12706 Beta-lactamase superfamily domain JWB57_09140 PF08359 YsiA-like protein, C-terminal region JWB57_09140 PF00440 Bacterial regulatory proteins, tetR family JWB57_09145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JWB57_09145 PF12833 Helix-turn-helix domain JWB57_09150 PF00106 short chain dehydrogenase JWB57_09155 PF06314 Acetoacetate decarboxylase (ADC) JWB57_09165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_09170 PF07995 Glucose / Sorbosone dehydrogenase JWB57_09180 PF00857 Isochorismatase family JWB57_09185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_09185 PF03466 LysR substrate binding domain JWB57_09190 PF07995 Glucose / Sorbosone dehydrogenase JWB57_09195 PF02254 TrkA-N domain JWB57_09195 PF00999 Sodium/hydrogen exchanger family JWB57_09205 PF01546 Peptidase family M20/M25/M40 JWB57_09205 PF07687 Peptidase dimerisation domain JWB57_09245 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) JWB57_09250 PF07690 Major Facilitator Superfamily JWB57_09255 PF04909 Amidohydrolase JWB57_09265 PF00392 Bacterial regulatory proteins, gntR family JWB57_09265 PF07702 UTRA domain JWB57_09270 PF08450 SMP-30/Gluconolactonase/LRE-like region JWB57_09280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_09280 PF03466 LysR substrate binding domain JWB57_09295 PF00529 HlyD membrane-fusion protein of T1SS JWB57_09295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JWB57_09310 PF00171 Aldehyde dehydrogenase family JWB57_09315 PF00920 Dehydratase family JWB57_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_09325 PF03466 LysR substrate binding domain JWB57_09330 PF01370 NAD dependent epimerase/dehydratase family JWB57_09335 PF07690 Major Facilitator Superfamily JWB57_09340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JWB57_09340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JWB57_09355 PF14572 Phosphoribosyl synthetase-associated domain JWB57_09355 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JWB57_09360 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JWB57_09375 PF03472 Autoinducer binding domain JWB57_09375 PF00196 Bacterial regulatory proteins, luxR family JWB57_09380 PF01425 Amidase JWB57_09385 PF13533 Biotin-lipoyl like JWB57_09390 PF07690 Major Facilitator Superfamily JWB57_09415 PF01975 Survival protein SurE JWB57_09425 PF04607 Region found in RelA / SpoT proteins JWB57_09425 PF02824 TGS domain JWB57_09425 PF13291 ACT domain JWB57_09430 PF00271 Helicase conserved C-terminal domain JWB57_09430 PF04851 Type III restriction enzyme, res subunit JWB57_09430 PF17757 UvrB interaction domain JWB57_09430 PF12344 Ultra-violet resistance protein B JWB57_09430 PF02151 UvrB/uvrC motif JWB57_09460 PF13673 Acetyltransferase (GNAT) domain JWB57_09465 PF12146 Serine aminopeptidase, S33 JWB57_09470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_09470 PF03466 LysR substrate binding domain JWB57_09485 PF12146 Serine aminopeptidase, S33 JWB57_09490 PF02311 AraC-like ligand binding domain JWB57_09490 PF12833 Helix-turn-helix domain JWB57_09500 PF00672 HAMP domain JWB57_09500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_09500 PF00512 His Kinase A (phospho-acceptor) domain JWB57_09500 PF16527 Two-component sensor protein CpxA, periplasmic domain JWB57_09505 PF00486 Transcriptional regulatory protein, C terminal JWB57_09505 PF00072 Response regulator receiver domain JWB57_09510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JWB57_09510 PF00529 HlyD membrane-fusion protein of T1SS JWB57_09515 PF00873 AcrB/AcrD/AcrF family JWB57_09520 PF02321 Outer membrane efflux protein JWB57_09525 PF12146 Serine aminopeptidase, S33 JWB57_09530 PF00743 Flavin-binding monooxygenase-like JWB57_09540 PF01266 FAD dependent oxidoreductase JWB57_10160 PF16970 Type-1 fimbrial protein, A JWB57_10165 PF02753 Pili assembly chaperone PapD, C-terminal domain JWB57_10165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JWB57_10170 PF00577 Outer membrane usher protein JWB57_10170 PF13954 PapC N-terminal domain JWB57_10170 PF13953 PapC C-terminal domain JWB57_10185 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_10185 PF00107 Zinc-binding dehydrogenase JWB57_10195 PF00199 Catalase JWB57_10210 PF13091 PLD-like domain JWB57_10225 PF01244 Membrane dipeptidase (Peptidase family M19) JWB57_10230 PF13186 Iron-sulfur cluster-binding domain JWB57_10230 PF04055 Radical SAM superfamily JWB57_10235 PF05402 Coenzyme PQQ synthesis protein D (PqqD) JWB57_10240 PF03070 TENA/THI-4/PQQC family JWB57_10245 PF12706 Beta-lactamase superfamily domain JWB57_10250 PF08042 PqqA family JWB57_10255 PF17941 Polyphosphate kinase C-terminal domain 1 JWB57_10255 PF13090 Polyphosphate kinase C-terminal domain 2 JWB57_10255 PF02503 Polyphosphate kinase middle domain JWB57_10255 PF13089 Polyphosphate kinase N-terminal domain JWB57_10260 PF00149 Calcineurin-like phosphoesterase JWB57_10270 PF00857 Isochorismatase family JWB57_10270 PF00550 Phosphopantetheine attachment site JWB57_10275 PF00106 short chain dehydrogenase JWB57_10280 PF00005 ABC transporter JWB57_10280 PF03459 TOBE domain JWB57_10285 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_10295 PF03459 TOBE domain JWB57_10295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_10300 PF00355 Rieske [2Fe-2S] domain JWB57_10300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JWB57_10305 PF00866 Ring hydroxylating beta subunit JWB57_10310 PF00970 Oxidoreductase FAD-binding domain JWB57_10310 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_10310 PF00175 Oxidoreductase NAD-binding domain JWB57_10315 PF12833 Helix-turn-helix domain JWB57_10315 PF14525 AraC-binding-like domain JWB57_10325 PF01613 Flavin reductase like domain JWB57_10340 PF01738 Dienelactone hydrolase family JWB57_10345 PF07690 Major Facilitator Superfamily JWB57_10350 PF06719 AraC-type transcriptional regulator N-terminus JWB57_10350 PF12833 Helix-turn-helix domain JWB57_10370 PF03466 LysR substrate binding domain JWB57_10370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_10375 PF01144 Coenzyme A transferase JWB57_10380 PF01144 Coenzyme A transferase JWB57_10385 PF02667 Short chain fatty acid transporter JWB57_10390 PF02803 Thiolase, C-terminal domain JWB57_10390 PF00108 Thiolase, N-terminal domain JWB57_10395 PF03466 LysR substrate binding domain JWB57_10395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_10400 PF03466 LysR substrate binding domain JWB57_10415 PF10415 Fumarase C C-terminus JWB57_10415 PF00206 Lyase JWB57_10420 PF07715 TonB-dependent Receptor Plug Domain JWB57_10420 PF00593 TonB dependent receptor JWB57_10425 PF00083 Sugar (and other) transporter JWB57_10440 PF00005 ABC transporter JWB57_10445 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_10450 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JWB57_10465 PF07702 UTRA domain JWB57_10465 PF00392 Bacterial regulatory proteins, gntR family JWB57_10475 PF02525 Flavodoxin-like fold JWB57_10480 PF01638 HxlR-like helix-turn-helix JWB57_10485 PF12833 Helix-turn-helix domain JWB57_10485 PF06445 GyrI-like small molecule binding domain JWB57_10500 PF01925 Sulfite exporter TauE/SafE JWB57_10510 PF00753 Metallo-beta-lactamase superfamily JWB57_10510 PF04273 Putative phosphatase (DUF442) JWB57_10515 PF02954 Bacterial regulatory protein, Fis family JWB57_10515 PF00072 Response regulator receiver domain JWB57_10515 PF00158 Sigma-54 interaction domain JWB57_10520 PF01062 Bestrophin, RFP-TM, chloride channel JWB57_10525 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_10525 PF00107 Zinc-binding dehydrogenase JWB57_10530 PF00106 short chain dehydrogenase JWB57_10535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JWB57_10535 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_10540 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JWB57_10540 PF00364 Biotin-requiring enzyme JWB57_10540 PF02817 e3 binding domain JWB57_10545 PF02779 Transketolase, pyrimidine binding domain JWB57_10545 PF02780 Transketolase, C-terminal domain JWB57_10550 PF00676 Dehydrogenase E1 component JWB57_10555 PF04055 Radical SAM superfamily JWB57_10570 PF00990 Diguanylate cyclase, GGDEF domain JWB57_10570 PF08448 PAS fold JWB57_10575 PF01264 Chorismate synthase JWB57_10580 PF05175 Methyltransferase small domain JWB57_10585 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_10595 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_10595 PF17862 AAA+ lid domain JWB57_10595 PF01434 Peptidase family M41 JWB57_10605 PF05166 YcgL domain JWB57_10625 PF00570 HRDC domain JWB57_10625 PF01612 3'-5' exonuclease JWB57_10630 PF02132 RecR protein JWB57_10630 PF13662 Toprim domain JWB57_10635 PF02575 YbaB/EbfC DNA-binding family JWB57_10645 PF01053 Cys/Met metabolism PLP-dependent enzyme JWB57_10650 PF00561 alpha/beta hydrolase fold JWB57_10655 PF08241 Methyltransferase domain JWB57_10685 PF01230 HIT domain JWB57_10710 PF02684 Lipid-A-disaccharide synthetase JWB57_10715 PF07715 TonB-dependent Receptor Plug Domain JWB57_10715 PF00593 TonB dependent receptor JWB57_10735 PF01925 Sulfite exporter TauE/SafE JWB57_10740 PF00793 DAHP synthetase I family JWB57_10745 PF02654 Cobalamin-5-phosphate synthase JWB57_10755 PF00300 Histidine phosphatase superfamily (branch 1) JWB57_10760 PF02277 Phosphoribosyltransferase JWB57_10765 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase JWB57_10775 PF13419 Haloacid dehalogenase-like hydrolase JWB57_10800 PF07715 TonB-dependent Receptor Plug Domain JWB57_10800 PF00593 TonB dependent receptor JWB57_10805 PF03737 Aldolase/RraA JWB57_10815 PF06276 Ferric iron reductase FhuF-like transporter JWB57_10815 PF04183 IucA / IucC family JWB57_10820 PF06276 Ferric iron reductase FhuF-like transporter JWB57_10820 PF04183 IucA / IucC family JWB57_10825 PF07690 Major Facilitator Superfamily JWB57_10830 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) JWB57_10835 PF06276 Ferric iron reductase FhuF-like transporter JWB57_10835 PF04183 IucA / IucC family JWB57_10840 PF04073 Aminoacyl-tRNA editing domain JWB57_10850 PF03109 ABC1 family JWB57_10855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_10855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_10855 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_10860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_10860 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_10860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_10865 PF00487 Fatty acid desaturase JWB57_10870 PF12852 Cupin JWB57_10870 PF12833 Helix-turn-helix domain JWB57_10875 PF00639 PPIC-type PPIASE domain JWB57_10875 PF09312 SurA N-terminal domain JWB57_10880 PF00216 Bacterial DNA-binding protein JWB57_10895 PF02082 Transcriptional regulator JWB57_10900 PF00266 Aminotransferase class-V JWB57_10905 PF01592 NifU-like N terminal domain JWB57_10910 PF01521 Iron-sulphur cluster biosynthesis JWB57_10915 PF00226 DnaJ domain JWB57_10915 PF07743 HSCB C-terminal oligomerisation domain JWB57_10920 PF00012 Hsp70 protein JWB57_10925 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_10930 PF00211 Adenylate and Guanylate cyclase catalytic domain JWB57_10940 PF02559 CarD-like/TRCF domain JWB57_10940 PF00270 DEAD/DEAH box helicase JWB57_10940 PF00271 Helicase conserved C-terminal domain JWB57_10940 PF03461 TRCF domain JWB57_10940 PF17757 UvrB interaction domain JWB57_10960 PF03737 Aldolase/RraA JWB57_10965 PF13460 NAD(P)H-binding JWB57_10970 PF01649 Ribosomal protein S20 JWB57_10980 PF00459 Inositol monophosphatase family JWB57_10995 PF00005 ABC transporter JWB57_10995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JWB57_11000 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11005 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11010 PF01432 Peptidase family M3 JWB57_11030 PF00593 TonB dependent receptor JWB57_11030 PF07715 TonB-dependent Receptor Plug Domain JWB57_11035 PF03544 Gram-negative bacterial TonB protein C-terminal JWB57_11040 PF01618 MotA/TolQ/ExbB proton channel family JWB57_11045 PF02472 Biopolymer transport protein ExbD/TolR JWB57_11050 PF02472 Biopolymer transport protein ExbD/TolR JWB57_11060 PF01274 Malate synthase JWB57_11065 PF03969 AFG1-like ATPase JWB57_11075 PF00743 Flavin-binding monooxygenase-like JWB57_11085 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JWB57_11095 PF00216 Bacterial DNA-binding protein JWB57_11100 PF00575 S1 RNA binding domain JWB57_11105 PF02224 Cytidylate kinase JWB57_11115 PF14437 MafB19-like deaminase JWB57_11125 PF03167 Uracil DNA glycosylase superfamily JWB57_11135 PF03934 Type II secretion system (T2SS), protein K JWB57_11140 PF07963 Prokaryotic N-terminal methylation motif JWB57_11140 PF11612 Type II secretion system (T2SS), protein J JWB57_11145 PF07963 Prokaryotic N-terminal methylation motif JWB57_11145 PF02501 Type II secretion system (T2SS), protein I JWB57_11160 PF01026 TatD related DNase JWB57_11170 PF09115 DNA polymerase III, delta subunit, C terminal JWB57_11175 PF02348 Cytidylyltransferase JWB57_11180 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JWB57_11185 PF00664 ABC transporter transmembrane region JWB57_11185 PF00005 ABC transporter JWB57_11195 PF01618 MotA/TolQ/ExbB proton channel family JWB57_11200 PF17762 HTH domain found in ParB protein JWB57_11200 PF02195 ParB-like nuclease domain JWB57_11205 PF13614 AAA domain JWB57_11210 PF02527 rRNA small subunit methyltransferase G JWB57_11215 PF00483 Nucleotidyl transferase JWB57_11220 PF01636 Phosphotransferase enzyme family JWB57_11225 PF04453 LPS transport system D JWB57_11225 PF03968 OstA-like protein JWB57_11230 PF00639 PPIC-type PPIASE domain JWB57_11230 PF09312 SurA N-terminal domain JWB57_11235 PF01116 Fructose-bisphosphate aldolase class-II JWB57_11245 PF00162 Phosphoglycerate kinase JWB57_11255 PF02545 Maf-like protein JWB57_11260 PF08007 Cupin superfamily protein JWB57_11275 PF00375 Sodium:dicarboxylate symporter family JWB57_11280 PF06912 Protein of unknown function (DUF1275) JWB57_11285 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JWB57_11290 PF00664 ABC transporter transmembrane region JWB57_11290 PF00005 ABC transporter JWB57_11300 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JWB57_11300 PF12833 Helix-turn-helix domain JWB57_11305 PF01597 Glycine cleavage H-protein JWB57_11310 PF02146 Sir2 family JWB57_11315 PF00474 Sodium:solute symporter family JWB57_11320 PF01037 Lrp/AsnC ligand binding domain JWB57_11325 PF00171 Aldehyde dehydrogenase family JWB57_11325 PF01619 Proline dehydrogenase JWB57_11325 PF14850 DNA-binding domain of Proline dehydrogenase JWB57_11325 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JWB57_11330 PF04229 GrpB protein JWB57_11335 PF05958 tRNA (Uracil-5-)-methyltransferase JWB57_11345 PF09992 Phosphodiester glycosidase JWB57_11355 PF04264 YceI-like domain JWB57_11365 PF02779 Transketolase, pyrimidine binding domain JWB57_11365 PF02780 Transketolase, C-terminal domain JWB57_11365 PF00456 Transketolase, thiamine diphosphate binding domain JWB57_11370 PF02773 S-adenosylmethionine synthetase, C-terminal domain JWB57_11370 PF02772 S-adenosylmethionine synthetase, central domain JWB57_11370 PF00438 S-adenosylmethionine synthetase, N-terminal domain JWB57_11390 PF00905 Penicillin binding protein transpeptidase domain JWB57_11405 PF02075 Crossover junction endodeoxyribonuclease RuvC JWB57_11410 PF01256 Carbohydrate kinase JWB57_11410 PF03853 YjeF-related protein N-terminus JWB57_11415 PF08331 Domain of unknown function (DUF1730) JWB57_11420 PF06968 Biotin and Thiamin Synthesis associated domain JWB57_11420 PF04055 Radical SAM superfamily JWB57_11435 PF16970 Type-1 fimbrial protein, A JWB57_11440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JWB57_11440 PF02753 Pili assembly chaperone PapD, C-terminal domain JWB57_11445 PF13953 PapC C-terminal domain JWB57_11445 PF13954 PapC N-terminal domain JWB57_11445 PF00577 Outer membrane usher protein JWB57_11465 PF00892 EamA-like transporter family JWB57_11475 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JWB57_11485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11485 PF03466 LysR substrate binding domain JWB57_11515 PF01709 Transcriptional regulator JWB57_11520 PF01037 Lrp/AsnC ligand binding domain JWB57_11530 PF00005 ABC transporter JWB57_11535 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11540 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_11555 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JWB57_11565 PF00296 Luciferase-like monooxygenase JWB57_11570 PF03180 NLPA lipoprotein JWB57_11575 PF03180 NLPA lipoprotein JWB57_11580 PF09383 NIL domain JWB57_11580 PF00005 ABC transporter JWB57_11585 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11590 PF06071 Protein of unknown function (DUF933) JWB57_11590 PF01926 50S ribosome-binding GTPase JWB57_11615 PF03591 AzlC protein JWB57_11620 PF05437 Branched-chain amino acid transport protein (AzlD) JWB57_11630 PF02222 ATP-grasp domain JWB57_11635 PF01909 Nucleotidyltransferase domain JWB57_11635 PF01966 HD domain JWB57_11635 PF08335 GlnD PII-uridylyltransferase JWB57_11640 PF00155 Aminotransferase class I and II JWB57_11650 PF12852 Cupin JWB57_11650 PF12833 Helix-turn-helix domain JWB57_11655 PF00255 Glutathione peroxidase JWB57_11660 PF01641 SelR domain JWB57_11665 PF00155 Aminotransferase class I and II JWB57_11670 PF00375 Sodium:dicarboxylate symporter family JWB57_11675 PF17763 Glutaminase/Asparaginase C-terminal domain JWB57_11675 PF00710 Asparaginase, N-terminal JWB57_11680 PF01336 OB-fold nucleic acid binding domain JWB57_11680 PF02811 PHP domain JWB57_11680 PF14579 Helix-hairpin-helix motif JWB57_11680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JWB57_11680 PF07733 Bacterial DNA polymerase III alpha NTPase domain JWB57_11685 PF00588 SpoU rRNA Methylase family JWB57_11690 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_11705 PF13192 Thioredoxin domain JWB57_11705 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_11720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11720 PF03466 LysR substrate binding domain JWB57_11725 PF01758 Sodium Bile acid symporter family JWB57_11730 PF01022 Bacterial regulatory protein, arsR family JWB57_11735 PF03960 ArsC family JWB57_11745 PF13382 Adenine deaminase C-terminal domain JWB57_11745 PF01979 Amidohydrolase family JWB57_11755 PF03466 LysR substrate binding domain JWB57_11755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11765 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JWB57_11770 PF01177 Asp/Glu/Hydantoin racemase JWB57_11775 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JWB57_11780 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11785 PF00005 ABC transporter JWB57_11790 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JWB57_11800 PF00083 Sugar (and other) transporter JWB57_11805 PF00296 Luciferase-like monooxygenase JWB57_11820 PF01654 Cytochrome bd terminal oxidase subunit I JWB57_11825 PF02322 Cytochrome bd terminal oxidase subunit II JWB57_11835 PF00155 Aminotransferase class I and II JWB57_11835 PF00392 Bacterial regulatory proteins, gntR family JWB57_11840 PF03466 LysR substrate binding domain JWB57_11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11855 PF00698 Acyl transferase domain JWB57_11860 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG JWB57_11870 PF01039 Carboxyl transferase domain JWB57_11875 PF06857 Malonate decarboxylase delta subunit (MdcD) JWB57_11880 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JWB57_11885 PF16957 Malonate decarboxylase, alpha subunit, transporter JWB57_11890 PF07690 Major Facilitator Superfamily JWB57_11905 PF00392 Bacterial regulatory proteins, gntR family JWB57_11910 PF04172 LrgB-like family JWB57_11915 PF03788 LrgA family JWB57_11920 PF03466 LysR substrate binding domain JWB57_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11925 PF14834 Glutathione S-transferase, C-terminal domain JWB57_11925 PF02798 Glutathione S-transferase, N-terminal domain JWB57_11930 PF02798 Glutathione S-transferase, N-terminal domain JWB57_11935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11935 PF03466 LysR substrate binding domain JWB57_11945 PF00581 Rhodanese-like domain JWB57_11950 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_11960 PF00266 Aminotransferase class-V JWB57_11965 PF01810 LysE type translocator JWB57_11970 PF03466 LysR substrate binding domain JWB57_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_11975 PF00497 Bacterial extracellular solute-binding proteins, family 3 JWB57_11980 PF00497 Bacterial extracellular solute-binding proteins, family 3 JWB57_11985 PF00005 ABC transporter JWB57_11990 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_11995 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_12010 PF00072 Response regulator receiver domain JWB57_12015 PF00072 Response regulator receiver domain JWB57_12015 PF09308 LuxQ, periplasmic JWB57_12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_12015 PF00512 His Kinase A (phospho-acceptor) domain JWB57_12025 PF13404 AsnC-type helix-turn-helix domain JWB57_12025 PF01037 Lrp/AsnC ligand binding domain JWB57_12035 PF00717 Peptidase S24-like JWB57_12060 PF00199 Catalase JWB57_12060 PF18011 C-terminal domain found in long catalases JWB57_12060 PF06628 Catalase-related immune-responsive JWB57_12070 PF00994 Probable molybdopterin binding domain JWB57_12070 PF18146 Damage-inducible protein CinA KH domain JWB57_12070 PF02464 Competence-damaged protein JWB57_12100 PF03466 LysR substrate binding domain JWB57_12100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_12120 PF13193 AMP-binding enzyme C-terminal domain JWB57_12120 PF00501 AMP-binding enzyme JWB57_12125 PF00440 Bacterial regulatory proteins, tetR family JWB57_12130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_12130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_12130 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_12135 PF01039 Carboxyl transferase domain JWB57_12140 PF00378 Enoyl-CoA hydratase/isomerase JWB57_12145 PF18140 Propionyl-coenzyme A carboxylase BT domain JWB57_12145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JWB57_12145 PF00364 Biotin-requiring enzyme JWB57_12145 PF00289 Biotin carboxylase, N-terminal domain JWB57_12145 PF02785 Biotin carboxylase C-terminal domain JWB57_12150 PF00682 HMGL-like JWB57_12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_12155 PF03466 LysR substrate binding domain JWB57_12170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_12170 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_12170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_12170 PF12806 Acetyl-CoA dehydrogenase C-terminal like JWB57_12180 PF07690 Major Facilitator Superfamily JWB57_12190 PF01144 Coenzyme A transferase JWB57_12195 PF01144 Coenzyme A transferase JWB57_12200 PF07690 Major Facilitator Superfamily JWB57_12205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_12205 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_12205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_12210 PF00378 Enoyl-CoA hydratase/isomerase JWB57_12220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JWB57_12220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JWB57_12220 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain JWB57_12225 PF00108 Thiolase, N-terminal domain JWB57_12225 PF02803 Thiolase, C-terminal domain JWB57_12230 PF09339 IclR helix-turn-helix domain JWB57_12235 PF07690 Major Facilitator Superfamily JWB57_12240 PF03060 Nitronate monooxygenase JWB57_12245 PF00378 Enoyl-CoA hydratase/isomerase JWB57_12250 PF09339 IclR helix-turn-helix domain JWB57_12255 PF02515 CoA-transferase family III JWB57_12260 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_12260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_12260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_12265 PF07690 Major Facilitator Superfamily JWB57_12270 PF13419 Haloacid dehalogenase-like hydrolase JWB57_12275 PF00266 Aminotransferase class-V JWB57_12280 PF01266 FAD dependent oxidoreductase JWB57_12285 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_12290 PF00005 ABC transporter JWB57_12290 PF08402 TOBE domain JWB57_12300 PF00392 Bacterial regulatory proteins, gntR family JWB57_12300 PF07702 UTRA domain JWB57_12305 PF01494 FAD binding domain JWB57_12310 PF09339 IclR helix-turn-helix domain JWB57_12310 PF01614 Bacterial transcriptional regulator JWB57_12315 PF02525 Flavodoxin-like fold JWB57_12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_12320 PF03466 LysR substrate binding domain JWB57_12325 PF02627 Carboxymuconolactone decarboxylase family JWB57_12330 PF00171 Aldehyde dehydrogenase family JWB57_12340 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JWB57_12350 PF00171 Aldehyde dehydrogenase family JWB57_12355 PF00296 Luciferase-like monooxygenase JWB57_12360 PF01613 Flavin reductase like domain JWB57_12365 PF12697 Alpha/beta hydrolase family JWB57_12385 PF01292 Prokaryotic cytochrome b561 JWB57_12390 PF00199 Catalase JWB57_12395 PF07690 Major Facilitator Superfamily JWB57_12400 PF00682 HMGL-like JWB57_12405 PF02515 CoA-transferase family III JWB57_12435 PF00313 'Cold-shock' DNA-binding domain JWB57_12470 PF00580 UvrD/REP helicase N-terminal domain JWB57_12470 PF13361 UvrD-like helicase C-terminal domain JWB57_12480 PF03061 Thioesterase superfamily JWB57_12485 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_12490 PF08223 PaaX-like protein C-terminal domain JWB57_12490 PF07848 PaaX-like protein JWB57_12495 PF00501 AMP-binding enzyme JWB57_12495 PF14535 AMP-binding enzyme C-terminal domain JWB57_12500 PF00108 Thiolase, N-terminal domain JWB57_12500 PF02803 Thiolase, C-terminal domain JWB57_12505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JWB57_12505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JWB57_12505 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain JWB57_12510 PF00378 Enoyl-CoA hydratase/isomerase JWB57_12515 PF00378 Enoyl-CoA hydratase/isomerase JWB57_12520 PF00970 Oxidoreductase FAD-binding domain JWB57_12520 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_12520 PF00175 Oxidoreductase NAD-binding domain JWB57_12525 PF01883 Iron-sulfur cluster assembly protein JWB57_12530 PF05138 Phenylacetic acid catabolic protein JWB57_12535 PF06243 Phenylacetic acid degradation B JWB57_12540 PF05138 Phenylacetic acid catabolic protein JWB57_12545 PF01575 MaoC like domain JWB57_12545 PF00171 Aldehyde dehydrogenase family JWB57_12550 PF03313 Serine dehydratase alpha chain JWB57_12550 PF03315 Serine dehydratase beta chain JWB57_12560 PF13520 Amino acid permease JWB57_12565 PF00171 Aldehyde dehydrogenase family JWB57_12570 PF00083 Sugar (and other) transporter JWB57_12580 PF04324 BFD-like [2Fe-2S] binding domain JWB57_12580 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_12590 PF01266 FAD dependent oxidoreductase JWB57_12595 PF05544 Proline racemase JWB57_12600 PF00392 Bacterial regulatory proteins, gntR family JWB57_12610 PF00701 Dihydrodipicolinate synthetase family JWB57_12620 PF00376 MerR family regulatory protein JWB57_12620 PF09278 MerR, DNA binding JWB57_12630 PF02677 Epoxyqueuosine reductase QueH JWB57_12645 PF07690 Major Facilitator Superfamily JWB57_12650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JWB57_12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_12660 PF03466 LysR substrate binding domain JWB57_12680 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE JWB57_12685 PF06812 ImpA, N-terminal, type VI secretion system JWB57_12690 PF10431 C-terminal, D2-small domain, of ClpB protein JWB57_12690 PF07724 AAA domain (Cdc48 subfamily) JWB57_12690 PF17871 AAA lid domain JWB57_12690 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_12700 PF00691 OmpA family JWB57_12700 PF01389 OmpA-like transmembrane domain JWB57_12710 PF14331 ImcF-related N-terminal domain JWB57_12710 PF06761 Intracellular multiplication and human macrophage-killing JWB57_12710 PF06744 Type VI secretion protein IcmF C-terminal JWB57_12725 PF05947 Type VI secretion system, TssF JWB57_12740 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath JWB57_12765 PF00005 ABC transporter JWB57_12770 PF00497 Bacterial extracellular solute-binding proteins, family 3 JWB57_12775 PF01425 Amidase JWB57_12780 PF08753 NikR C terminal nickel binding domain JWB57_12780 PF01402 Ribbon-helix-helix protein, copG family JWB57_12790 PF01638 HxlR-like helix-turn-helix JWB57_12795 PF02525 Flavodoxin-like fold JWB57_12800 PF02785 Biotin carboxylase C-terminal domain JWB57_12800 PF00289 Biotin carboxylase, N-terminal domain JWB57_12800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JWB57_12815 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_12815 PF13823 Alcohol dehydrogenase GroES-associated JWB57_12815 PF00107 Zinc-binding dehydrogenase JWB57_12825 PF00440 Bacterial regulatory proteins, tetR family JWB57_12850 PF00654 Voltage gated chloride channel JWB57_12855 PF02785 Biotin carboxylase C-terminal domain JWB57_12855 PF00289 Biotin carboxylase, N-terminal domain JWB57_12855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JWB57_12855 PF00364 Biotin-requiring enzyme JWB57_12865 PF07286 Protein of unknown function (DUF1445) JWB57_12870 PF03746 LamB/YcsF family JWB57_12875 PF01566 Natural resistance-associated macrophage protein JWB57_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_12880 PF03466 LysR substrate binding domain JWB57_12900 PF03527 RHS protein JWB57_12900 PF05593 RHS Repeat JWB57_12915 PF05593 RHS Repeat JWB57_12915 PF03527 RHS protein JWB57_12920 PF04717 Type VI secretion system, phage-baseplate injector JWB57_12920 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JWB57_12920 PF13296 Putative type VI secretion system Rhs element Vgr JWB57_12945 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JWB57_12945 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JWB57_12965 PF07690 Major Facilitator Superfamily JWB57_12975 PF03279 Bacterial lipid A biosynthesis acyltransferase JWB57_12985 PF00892 EamA-like transporter family JWB57_12990 PF01037 Lrp/AsnC ligand binding domain JWB57_12995 PF05188 MutS domain II JWB57_12995 PF05192 MutS domain III JWB57_12995 PF05190 MutS family domain IV JWB57_12995 PF00488 MutS domain V JWB57_12995 PF01624 MutS domain I JWB57_13005 PF11953 Domain of unknown function (DUF3470) JWB57_13005 PF00037 4Fe-4S binding domain JWB57_13015 PF01596 O-methyltransferase JWB57_13025 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_13030 PF01205 Uncharacterized protein family UPF0029 JWB57_13040 PF00664 ABC transporter transmembrane region JWB57_13040 PF00005 ABC transporter JWB57_13040 PF03412 Peptidase C39 family JWB57_13045 PF02321 Outer membrane efflux protein JWB57_13050 PF00005 ABC transporter JWB57_13050 PF12399 Branched-chain amino acid ATP-binding cassette transporter JWB57_13055 PF03968 OstA-like protein JWB57_13070 PF01380 SIS domain JWB57_13070 PF00571 CBS domain JWB57_13075 PF01406 tRNA synthetases class I (C) catalytic domain JWB57_13075 PF09190 DALR domain JWB57_13085 PF00589 Phage integrase family JWB57_13120 PF12708 Pectate lyase superfamily protein JWB57_13120 PF13229 Right handed beta helix region JWB57_13140 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) JWB57_13160 PF06381 Protein of unknown function (DUF1073) JWB57_13230 PF01638 HxlR-like helix-turn-helix JWB57_13235 PF07690 Major Facilitator Superfamily JWB57_13260 PF03807 NADP oxidoreductase coenzyme F420-dependent JWB57_13260 PF14748 Pyrroline-5-carboxylate reductase dimerisation JWB57_13270 PF00313 'Cold-shock' DNA-binding domain JWB57_13310 PF13742 OB-fold nucleic acid binding domain JWB57_13310 PF02601 Exonuclease VII, large subunit JWB57_13345 PF00376 MerR family regulatory protein JWB57_13345 PF09278 MerR, DNA binding JWB57_13350 PF00403 Heavy-metal-associated domain JWB57_13355 PF00403 Heavy-metal-associated domain JWB57_13360 PF03466 LysR substrate binding domain JWB57_13360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_13365 PF00355 Rieske [2Fe-2S] domain JWB57_13365 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JWB57_13375 PF00970 Oxidoreductase FAD-binding domain JWB57_13375 PF00175 Oxidoreductase NAD-binding domain JWB57_13375 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_13380 PF00106 short chain dehydrogenase JWB57_13385 PF03594 Benzoate membrane transport protein JWB57_13390 PF07690 Major Facilitator Superfamily JWB57_13400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JWB57_13400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JWB57_13405 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JWB57_13405 PF00271 Helicase conserved C-terminal domain JWB57_13405 PF04408 Helicase associated domain (HA2) JWB57_13405 PF11898 Domain of unknown function (DUF3418) JWB57_13405 PF00270 DEAD/DEAH box helicase JWB57_13410 PF00578 AhpC/TSA family JWB57_13410 PF10417 C-terminal domain of 1-Cys peroxiredoxin JWB57_13430 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_13430 PF13192 Thioredoxin domain JWB57_13440 PF02798 Glutathione S-transferase, N-terminal domain JWB57_13440 PF00043 Glutathione S-transferase, C-terminal domain JWB57_13450 PF02390 Putative methyltransferase JWB57_13455 PF00043 Glutathione S-transferase, C-terminal domain JWB57_13455 PF13417 Glutathione S-transferase, N-terminal domain JWB57_13465 PF00691 OmpA family JWB57_13465 PF13488 Glycine zipper JWB57_13470 PF01979 Amidohydrolase family JWB57_13475 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JWB57_13475 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JWB57_13485 PF02926 THUMP domain JWB57_13485 PF10672 S-adenosylmethionine-dependent methyltransferase JWB57_13485 PF01170 Putative RNA methylase family UPF0020 JWB57_13500 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_13500 PF07724 AAA domain (Cdc48 subfamily) JWB57_13500 PF17871 AAA lid domain JWB57_13500 PF02861 Clp amino terminal domain, pathogenicity island component JWB57_13500 PF10431 C-terminal, D2-small domain, of ClpB protein JWB57_13515 PF02566 OsmC-like protein JWB57_13525 PF13545 Crp-like helix-turn-helix domain JWB57_13525 PF00027 Cyclic nucleotide-binding domain JWB57_13530 PF00248 Aldo/keto reductase family JWB57_13545 PF00709 Adenylosuccinate synthetase JWB57_13550 PF13393 Histidyl-tRNA synthetase JWB57_13555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JWB57_13555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JWB57_13560 PF02272 DHHA1 domain JWB57_13560 PF01411 tRNA synthetases class II (A) JWB57_13560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JWB57_13565 PF13840 ACT domain JWB57_13565 PF00696 Amino acid kinase family JWB57_13565 PF01842 ACT domain JWB57_13570 PF02599 Global regulator protein family JWB57_13575 PF01351 Ribonuclease HII JWB57_13585 PF01292 Prokaryotic cytochrome b561 JWB57_13590 PF00962 Adenosine/AMP deaminase JWB57_13595 PF00860 Permease family JWB57_13605 PF00743 Flavin-binding monooxygenase-like JWB57_13610 PF00106 short chain dehydrogenase JWB57_13620 PF02678 Pirin JWB57_13620 PF17954 Quercetinase C-terminal cupin domain JWB57_13625 PF17932 Tetracyclin repressor-like, C-terminal domain JWB57_13625 PF00440 Bacterial regulatory proteins, tetR family JWB57_13635 PF00106 short chain dehydrogenase JWB57_13640 PF00743 Flavin-binding monooxygenase-like JWB57_13645 PF04072 Leucine carboxyl methyltransferase JWB57_13650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JWB57_13650 PF12833 Helix-turn-helix domain JWB57_13655 PF00743 Flavin-binding monooxygenase-like JWB57_13660 PF00106 short chain dehydrogenase JWB57_13665 PF07859 alpha/beta hydrolase fold JWB57_13670 PF05199 GMC oxidoreductase JWB57_13675 PF03573 outer membrane porin, OprD family JWB57_13680 PF07690 Major Facilitator Superfamily JWB57_13685 PF00355 Rieske [2Fe-2S] domain JWB57_13690 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_13690 PF00175 Oxidoreductase NAD-binding domain JWB57_13705 PF07690 Major Facilitator Superfamily JWB57_13710 PF00378 Enoyl-CoA hydratase/isomerase JWB57_13715 PF00171 Aldehyde dehydrogenase family JWB57_13725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_13725 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_13725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_13730 PF03573 outer membrane porin, OprD family JWB57_13745 PF07519 Tannase and feruloyl esterase JWB57_13750 PF07729 FCD domain JWB57_13750 PF00392 Bacterial regulatory proteins, gntR family JWB57_13755 PF00171 Aldehyde dehydrogenase family JWB57_13760 PF00701 Dihydrodipicolinate synthetase family JWB57_13765 PF13378 Enolase C-terminal domain-like JWB57_13770 PF07690 Major Facilitator Superfamily JWB57_13775 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JWB57_13775 PF08666 SAF domain JWB57_13780 PF00892 EamA-like transporter family JWB57_13785 PF12833 Helix-turn-helix domain JWB57_13785 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JWB57_13790 PF00171 Aldehyde dehydrogenase family JWB57_13810 PF04958 Arginine N-succinyltransferase beta subunit JWB57_13815 PF00202 Aminotransferase class-III JWB57_13825 PF00171 Aldehyde dehydrogenase family JWB57_13835 PF07729 FCD domain JWB57_13835 PF00392 Bacterial regulatory proteins, gntR family JWB57_13845 PF00324 Amino acid permease JWB57_13850 PF01266 FAD dependent oxidoreductase JWB57_13855 PF00324 Amino acid permease JWB57_13885 PF05593 RHS Repeat JWB57_13885 PF03527 RHS protein JWB57_13890 PF13296 Putative type VI secretion system Rhs element Vgr JWB57_13890 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) JWB57_13890 PF04717 Type VI secretion system, phage-baseplate injector JWB57_13910 PF03180 NLPA lipoprotein JWB57_13920 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_13920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_13925 PF00764 Arginosuccinate synthase JWB57_13930 PF01590 GAF domain JWB57_13930 PF00563 EAL domain JWB57_13930 PF00990 Diguanylate cyclase, GGDEF domain JWB57_13930 PF00360 Phytochrome region JWB57_13935 PF01979 Amidohydrolase family JWB57_13940 PF00929 Exonuclease JWB57_13950 PF00593 TonB dependent receptor JWB57_13950 PF07715 TonB-dependent Receptor Plug Domain JWB57_13970 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_13970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JWB57_13975 PF00005 ABC transporter JWB57_13975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JWB57_13980 PF12911 N-terminal TM domain of oligopeptide transport permease C JWB57_13980 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_13985 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_13990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JWB57_13995 PF01464 Transglycosylase SLT domain JWB57_13995 PF01476 LysM domain JWB57_13995 PF01464 Transglycosylase SLT domain JWB57_13995 PF01476 LysM domain JWB57_14000 PF00929 Exonuclease JWB57_14010 PF09297 NADH pyrophosphatase zinc ribbon domain JWB57_14010 PF00293 NUDIX domain JWB57_14020 PF04972 BON domain JWB57_14025 PF02021 Uncharacterised protein family UPF0102 JWB57_14030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JWB57_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_14040 PF03466 LysR substrate binding domain JWB57_14045 PF01810 LysE type translocator JWB57_14055 PF13411 MerR HTH family regulatory protein JWB57_14065 PF01494 FAD binding domain JWB57_14070 PF01494 FAD binding domain JWB57_14075 PF05195 Aminopeptidase P, N-terminal domain JWB57_14075 PF00557 Metallopeptidase family M24 JWB57_14115 PF01812 5-formyltetrahydrofolate cyclo-ligase family JWB57_14125 PF00004 ATPase family associated with various cellular activities (AAA) JWB57_14125 PF02190 ATP-dependent protease La (LON) substrate-binding domain JWB57_14125 PF05362 Lon protease (S16) C-terminal proteolytic domain JWB57_14130 PF02590 Predicted SPOUT methyltransferase JWB57_14135 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JWB57_14145 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JWB57_14145 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JWB57_14150 PF04060 Putative Fe-S cluster JWB57_14155 PF00633 Helix-hairpin-helix motif JWB57_14155 PF10576 Iron-sulfur binding domain of endonuclease III JWB57_14155 PF00730 HhH-GPD superfamily base excision DNA repair protein JWB57_14165 PF05191 Adenylate kinase, active site lid JWB57_14180 PF03717 Penicillin-binding Protein dimerisation domain JWB57_14180 PF00905 Penicillin binding protein transpeptidase domain JWB57_14195 PF02492 CobW/HypB/UreG, nucleotide-binding domain JWB57_14200 PF01730 UreF JWB57_14205 PF05194 UreE urease accessory protein, C-terminal domain JWB57_14205 PF02814 UreE urease accessory protein, N-terminal domain JWB57_14210 PF01979 Amidohydrolase family JWB57_14210 PF00449 Urease alpha-subunit, N-terminal domain JWB57_14215 PF00547 Urease, gamma subunit JWB57_14220 PF01774 UreD urease accessory protein JWB57_14235 PF00463 Isocitrate lyase family JWB57_14240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_14240 PF03466 LysR substrate binding domain JWB57_14245 PF00571 CBS domain JWB57_14245 PF03471 Transporter associated domain JWB57_14245 PF01595 Cyclin M transmembrane N-terminal domain JWB57_14250 PF03600 Citrate transporter JWB57_14265 PF00009 Elongation factor Tu GTP binding domain JWB57_14270 PF01507 Phosphoadenosine phosphosulfate reductase family JWB57_14280 PF14052 Capsule assembly protein Wzi JWB57_14285 PF01336 OB-fold nucleic acid binding domain JWB57_14285 PF00152 tRNA synthetases class II (D, K and N) JWB57_14300 PF00301 Rubredoxin JWB57_14305 PF18113 Rubredoxin binding C-terminal domain JWB57_14305 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_14310 PF00561 alpha/beta hydrolase fold JWB57_14315 PF03466 LysR substrate binding domain JWB57_14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_14325 PF17941 Polyphosphate kinase C-terminal domain 1 JWB57_14325 PF13090 Polyphosphate kinase C-terminal domain 2 JWB57_14325 PF02503 Polyphosphate kinase middle domain JWB57_14325 PF13089 Polyphosphate kinase N-terminal domain JWB57_14330 PF00912 Transglycosylase JWB57_14335 PF01694 Rhomboid family JWB57_14345 PF00005 ABC transporter JWB57_14350 PF13472 GDSL-like Lipase/Acylhydrolase family JWB57_14355 PF00484 Carbonic anhydrase JWB57_14360 PF00561 alpha/beta hydrolase fold JWB57_14370 PF07715 TonB-dependent Receptor Plug Domain JWB57_14370 PF00593 TonB dependent receptor JWB57_14375 PF01521 Iron-sulphur cluster biosynthesis JWB57_14375 PF01106 NifU-like domain JWB57_14385 PF00884 Sulfatase JWB57_14390 PF03781 Sulfatase-modifying factor enzyme 1 JWB57_14405 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_14410 PF01384 Phosphate transporter family JWB57_14415 PF02310 B12 binding domain JWB57_14415 PF02607 B12 binding domain JWB57_14415 PF02965 Vitamin B12 dependent methionine synthase, activation domain JWB57_14415 PF00809 Pterin binding enzyme JWB57_14415 PF02574 Homocysteine S-methyltransferase JWB57_14420 PF02779 Transketolase, pyrimidine binding domain JWB57_14420 PF02780 Transketolase, C-terminal domain JWB57_14425 PF00456 Transketolase, thiamine diphosphate binding domain JWB57_14430 PF07690 Major Facilitator Superfamily JWB57_14440 PF03466 LysR substrate binding domain JWB57_14440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_14450 PF01263 Aldose 1-epimerase JWB57_14455 PF07690 Major Facilitator Superfamily JWB57_14460 PF12833 Helix-turn-helix domain JWB57_14460 PF02311 AraC-like ligand binding domain JWB57_14465 PF04960 Glutaminase JWB57_14470 PF01327 Polypeptide deformylase JWB57_14475 PF07690 Major Facilitator Superfamily JWB57_14485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JWB57_14485 PF00205 Thiamine pyrophosphate enzyme, central domain JWB57_14485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JWB57_14490 PF00171 Aldehyde dehydrogenase family JWB57_14495 PF01958 Domain of unknown function DUF108 JWB57_14495 PF03447 Homoserine dehydrogenase, NAD binding domain JWB57_14505 PF12697 Alpha/beta hydrolase family JWB57_14515 PF07690 Major Facilitator Superfamily JWB57_14520 PF14759 Reductase C-terminal JWB57_14520 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_14525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JWB57_14535 PF00355 Rieske [2Fe-2S] domain JWB57_14545 PF00355 Rieske [2Fe-2S] domain JWB57_14550 PF09339 IclR helix-turn-helix domain JWB57_14550 PF01614 Bacterial transcriptional regulator JWB57_14565 PF00378 Enoyl-CoA hydratase/isomerase JWB57_14575 PF00535 Glycosyl transferase family 2 JWB57_14580 PF01522 Polysaccharide deacetylase JWB57_14580 PF14883 Hypothetical glycosyl hydrolase family 13 JWB57_14585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JWB57_14590 PF07152 YaeQ protein JWB57_14595 PF00375 Sodium:dicarboxylate symporter family JWB57_14600 PF07683 Cobalamin synthesis protein cobW C-terminal domain JWB57_14600 PF02492 CobW/HypB/UreG, nucleotide-binding domain JWB57_14610 PF03061 Thioesterase superfamily JWB57_14620 PF02028 BCCT, betaine/carnitine/choline family transporter JWB57_14625 PF02028 BCCT, betaine/carnitine/choline family transporter JWB57_14630 PF13977 BetI-type transcriptional repressor, C-terminal JWB57_14630 PF00440 Bacterial regulatory proteins, tetR family JWB57_14635 PF00171 Aldehyde dehydrogenase family JWB57_14640 PF05199 GMC oxidoreductase JWB57_14640 PF00732 GMC oxidoreductase JWB57_14645 PF06039 Malate:quinone oxidoreductase (Mqo) JWB57_14655 PF02574 Homocysteine S-methyltransferase JWB57_14660 PF13520 Amino acid permease JWB57_14685 PF01126 Heme oxygenase JWB57_14695 PF04575 Protein of unknown function (DUF560) JWB57_14705 PF07715 TonB-dependent Receptor Plug Domain JWB57_14705 PF00593 TonB dependent receptor JWB57_14715 PF04542 Sigma-70 region 2 JWB57_14715 PF08281 Sigma-70, region 4 JWB57_14725 PF00701 Dihydrodipicolinate synthetase family JWB57_14730 PF00083 Sugar (and other) transporter JWB57_14760 PF08774 VRR-NUC domain JWB57_14760 PF04851 Type III restriction enzyme, res subunit JWB57_14790 PF13784 Fic/DOC family N-terminal JWB57_14790 PF02661 Fic/DOC family JWB57_14795 PF00436 Single-strand binding protein family JWB57_14850 PF00589 Phage integrase family JWB57_14850 PF13356 Arm DNA-binding domain JWB57_14865 PF07690 Major Facilitator Superfamily JWB57_14870 PF13533 Biotin-lipoyl like JWB57_14875 PF03061 Thioesterase superfamily JWB57_14880 PF00490 Delta-aminolevulinic acid dehydratase JWB57_14885 PF01266 FAD dependent oxidoreductase JWB57_14890 PF08338 Domain of unknown function (DUF1731) JWB57_14890 PF01370 NAD dependent epimerase/dehydratase family JWB57_14910 PF00149 Calcineurin-like phosphoesterase JWB57_14910 PF12320 Type 5 capsule protein repressor C-terminal domain JWB57_14920 PF01168 Alanine racemase, N-terminal domain JWB57_14925 PF00437 Type II/IV secretion system protein JWB57_14930 PF00437 Type II/IV secretion system protein JWB57_14935 PF01475 Ferric uptake regulator family JWB57_14940 PF04355 SmpA / OmlA family JWB57_14945 PF03658 RnfH family Ubiquitin JWB57_14955 PF01814 Hemerythrin HHE cation binding domain JWB57_14960 PF13230 Glutamine amidotransferases class-II JWB57_14970 PF00696 Amino acid kinase family JWB57_14975 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JWB57_14975 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JWB57_14975 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JWB57_14975 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JWB57_14980 PF00692 dUTPase JWB57_14985 PF00580 UvrD/REP helicase N-terminal domain JWB57_14985 PF13361 UvrD-like helicase C-terminal domain JWB57_14990 PF00691 OmpA family JWB57_14990 PF13488 Glycine zipper JWB57_14995 PF01553 Acyltransferase JWB57_15005 PF03775 Septum formation inhibitor MinC, C-terminal domain JWB57_15010 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JWB57_15015 PF03776 Septum formation topological specificity factor MinE JWB57_15025 PF01810 LysE type translocator JWB57_15030 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JWB57_15030 PF17854 FtsK alpha domain JWB57_15030 PF01580 FtsK/SpoIIIE family JWB57_15030 PF09397 Ftsk gamma domain JWB57_15035 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_15040 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JWB57_15045 PF04377 Arginine-tRNA-protein transferase, C terminus JWB57_15045 PF04376 Arginine-tRNA-protein transferase, N terminus JWB57_15050 PF00583 Acetyltransferase (GNAT) family JWB57_15065 PF00009 Elongation factor Tu GTP binding domain JWB57_15065 PF03144 Elongation factor Tu domain 2 JWB57_15065 PF03143 Elongation factor Tu C-terminal domain JWB57_15070 PF03144 Elongation factor Tu domain 2 JWB57_15070 PF00009 Elongation factor Tu GTP binding domain JWB57_15070 PF14492 Elongation Factor G, domain II JWB57_15070 PF00679 Elongation factor G C-terminus JWB57_15070 PF03764 Elongation factor G, domain IV JWB57_15075 PF00177 Ribosomal protein S7p/S5e JWB57_15080 PF00164 Ribosomal protein S12/S23 JWB57_15090 PF00109 Beta-ketoacyl synthase, N-terminal domain JWB57_15090 PF02801 Beta-ketoacyl synthase, C-terminal domain JWB57_15095 PF03653 Uncharacterised protein family (UPF0093) JWB57_15100 PF02678 Pirin JWB57_15100 PF05726 Pirin C-terminal cupin domain JWB57_15110 PF00795 Carbon-nitrogen hydrolase JWB57_15110 PF02540 NAD synthase JWB57_15125 PF00970 Oxidoreductase FAD-binding domain JWB57_15125 PF00175 Oxidoreductase NAD-binding domain JWB57_15125 PF00111 2Fe-2S iron-sulfur cluster binding domain JWB57_15130 PF00171 Aldehyde dehydrogenase family JWB57_15135 PF00355 Rieske [2Fe-2S] domain JWB57_15135 PF00848 Ring hydroxylating alpha subunit (catalytic domain) JWB57_15140 PF07859 alpha/beta hydrolase fold JWB57_15145 PF02028 BCCT, betaine/carnitine/choline family transporter JWB57_15150 PF00180 Isocitrate/isopropylmalate dehydrogenase JWB57_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_15155 PF03466 LysR substrate binding domain JWB57_15175 PF00037 4Fe-4S binding domain JWB57_15180 PF01467 Cytidylyltransferase-like JWB57_15185 PF01668 SmpB protein JWB57_15190 PF03358 NADPH-dependent FMN reductase JWB57_15195 PF02578 Multi-copper polyphenol oxidoreductase laccase JWB57_15200 PF00849 RNA pseudouridylate synthase JWB57_15200 PF01479 S4 domain JWB57_15205 PF13525 Outer membrane lipoprotein JWB57_15210 PF08275 DNA primase catalytic core, N-terminal domain JWB57_15210 PF10410 DnaB-helicase binding domain of primase JWB57_15210 PF08278 DNA primase DnaG DnaB-binding JWB57_15210 PF01807 CHC2 zinc finger JWB57_15215 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JWB57_15215 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JWB57_15215 PF01488 Shikimate / quinate 5-dehydrogenase JWB57_15225 PF03550 Outer membrane lipoprotein LolB JWB57_15230 PF08544 GHMP kinases C terminal JWB57_15230 PF00288 GHMP kinases N terminal domain JWB57_15255 PF14572 Phosphoribosyl synthetase-associated domain JWB57_15255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JWB57_15260 PF01386 Ribosomal L25p family JWB57_15265 PF01195 Peptidyl-tRNA hydrolase JWB57_15270 PF02261 Aspartate decarboxylase JWB57_15285 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JWB57_15295 PF02581 Thiamine monophosphate synthase JWB57_15295 PF03070 TENA/THI-4/PQQC family JWB57_15295 PF08543 Phosphomethylpyrimidine kinase JWB57_15300 PF04972 BON domain JWB57_15300 PF01476 LysM domain JWB57_15305 PF00550 Phosphopantetheine attachment site JWB57_15315 PF00698 Acyl transferase domain JWB57_15320 PF01783 Ribosomal L32p protein family JWB57_15325 PF02620 Large ribosomal RNA subunit accumulation protein YceD JWB57_15330 PF04315 Elongation factor P hydroxylase JWB57_15335 PF01300 Telomere recombination JWB57_15340 PF02616 Segregation and condensation protein ScpA JWB57_15345 PF04079 Segregation and condensation complex subunit ScpB JWB57_15350 PF01479 S4 domain JWB57_15350 PF00849 RNA pseudouridylate synthase JWB57_15365 PF00155 Aminotransferase class I and II JWB57_15370 PF00202 Aminotransferase class-III JWB57_15370 PF04055 Radical SAM superfamily JWB57_15370 PF06968 Biotin and Thiamin Synthesis associated domain JWB57_15375 PF12697 Alpha/beta hydrolase family JWB57_15375 PF08241 Methyltransferase domain JWB57_15385 PF00982 Glycosyltransferase family 20 JWB57_15390 PF07690 Major Facilitator Superfamily JWB57_15395 PF00210 Ferritin-like domain JWB57_15400 PF01653 NAD-dependent DNA ligase adenylation domain JWB57_15400 PF00533 BRCA1 C Terminus (BRCT) domain JWB57_15400 PF12826 Helix-hairpin-helix motif JWB57_15400 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JWB57_15400 PF03120 NAD-dependent DNA ligase OB-fold domain JWB57_15410 PF06470 SMC proteins Flexible Hinge Domain JWB57_15410 PF02463 RecF/RecN/SMC N terminal domain JWB57_15420 PF01925 Sulfite exporter TauE/SafE JWB57_15430 PF03309 Type III pantothenate kinase JWB57_15435 PF00448 SRP54-type protein, GTPase domain JWB57_15435 PF02881 SRP54-type protein, helical bundle domain JWB57_15435 PF02978 Signal peptide binding domain JWB57_15445 PF01207 Dihydrouridine synthase (Dus) JWB57_15475 PF00692 dUTPase JWB57_15490 PF01048 Phosphorylase superfamily JWB57_15495 PF10609 NUBPL iron-transfer P-loop NTPase JWB57_15505 PF01588 Putative tRNA binding domain JWB57_15505 PF09334 tRNA synthetases class I (M) JWB57_15530 PF13533 Biotin-lipoyl like JWB57_15535 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_15550 PF05552 Conserved TM helix JWB57_15565 PF00970 Oxidoreductase FAD-binding domain JWB57_15565 PF00175 Oxidoreductase NAD-binding domain JWB57_15570 PF03466 LysR substrate binding domain JWB57_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_15580 PF00313 'Cold-shock' DNA-binding domain JWB57_15590 PF00361 Proton-conducting membrane transporter JWB57_15595 PF00361 Proton-conducting membrane transporter JWB57_15600 PF00361 Proton-conducting membrane transporter JWB57_15600 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JWB57_15605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JWB57_15610 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JWB57_15615 PF12838 4Fe-4S dicluster domain JWB57_15620 PF00146 NADH dehydrogenase JWB57_15625 PF00384 Molybdopterin oxidoreductase JWB57_15625 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JWB57_15625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JWB57_15630 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JWB57_15630 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JWB57_15630 PF10531 SLBB domain JWB57_15640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JWB57_15640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JWB57_15645 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JWB57_15650 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JWB57_15655 PF00990 Diguanylate cyclase, GGDEF domain JWB57_15655 PF17151 Periplasmic sensor domain JWB57_15665 PF00512 His Kinase A (phospho-acceptor) domain JWB57_15665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_15665 PF00672 HAMP domain JWB57_15670 PF00486 Transcriptional regulatory protein, C terminal JWB57_15670 PF00072 Response regulator receiver domain JWB57_15680 PF02867 Ribonucleotide reductase, barrel domain JWB57_15680 PF03477 ATP cone domain JWB57_15680 PF00317 Ribonucleotide reductase, all-alpha domain JWB57_15690 PF00268 Ribonucleotide reductase, small chain JWB57_15700 PF02567 Phenazine biosynthesis-like protein JWB57_15715 PF16295 Tetracyclin repressor-like, C-terminal domain JWB57_15715 PF00440 Bacterial regulatory proteins, tetR family JWB57_15720 PF01613 Flavin reductase like domain JWB57_15725 PF01717 Cobalamin-independent synthase, Catalytic domain JWB57_15725 PF08267 Cobalamin-independent synthase, N-terminal domain JWB57_15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_15735 PF03466 LysR substrate binding domain JWB57_15740 PF01810 LysE type translocator JWB57_15750 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term JWB57_15750 PF12833 Helix-turn-helix domain JWB57_15755 PF07687 Peptidase dimerisation domain JWB57_15755 PF01546 Peptidase family M20/M25/M40 JWB57_15765 PF03466 LysR substrate binding domain JWB57_15765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_15770 PF07690 Major Facilitator Superfamily JWB57_15780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_15780 PF03466 LysR substrate binding domain JWB57_15785 PF00890 FAD binding domain JWB57_15785 PF14537 Cytochrome c3 JWB57_15795 PF02515 CoA-transferase family III JWB57_15800 PF07690 Major Facilitator Superfamily JWB57_15805 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_15805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_15805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_15810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_15810 PF03466 LysR substrate binding domain JWB57_15815 PF00107 Zinc-binding dehydrogenase JWB57_15815 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_15820 PF00962 Adenosine/AMP deaminase JWB57_15845 PF02445 Quinolinate synthetase A protein JWB57_15850 PF01960 ArgJ family JWB57_15855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JWB57_15855 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JWB57_15860 PF00893 Small Multidrug Resistance protein JWB57_15870 PF05275 Copper resistance protein B precursor (CopB) JWB57_15875 PF00394 Multicopper oxidase JWB57_15875 PF07731 Multicopper oxidase JWB57_15875 PF07732 Multicopper oxidase JWB57_15890 PF00834 Ribulose-phosphate 3 epimerase family JWB57_15900 PF00756 Putative esterase JWB57_15910 PF04445 Putative SAM-dependent methyltransferase JWB57_15915 PF00814 Glycoprotease family JWB57_15920 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_15925 PF00293 NUDIX domain JWB57_15970 PF00155 Aminotransferase class I and II JWB57_15975 PF00815 Histidinol dehydrogenase JWB57_15980 PF01634 ATP phosphoribosyltransferase JWB57_15985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JWB57_15990 PF01722 BolA-like protein JWB57_15995 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JWB57_16000 PF04963 Sigma-54 factor, core binding domain JWB57_16000 PF04552 Sigma-54, DNA binding domain JWB57_16000 PF00309 Sigma-54 factor, Activator interacting domain (AID) JWB57_16045 PF00795 Carbon-nitrogen hydrolase JWB57_16055 PF01047 MarR family JWB57_16060 PF02566 OsmC-like protein JWB57_16065 PF00437 Type II/IV secretion system protein JWB57_16085 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JWB57_16085 PF01367 5'-3' exonuclease, C-terminal SAM fold JWB57_16085 PF00476 DNA polymerase family A JWB57_16085 PF01612 3'-5' exonuclease JWB57_16090 PF02325 YGGT family JWB57_16095 PF14748 Pyrroline-5-carboxylate reductase dimerisation JWB57_16095 PF03807 NADP oxidoreductase coenzyme F420-dependent JWB57_16100 PF01171 PP-loop family JWB57_16100 PF09179 TilS substrate binding domain JWB57_16100 PF11734 TilS substrate C-terminal domain JWB57_16105 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JWB57_16110 PF02541 Ppx/GppA phosphatase family JWB57_16115 PF00085 Thioredoxin JWB57_16120 PF07497 Rho termination factor, RNA-binding domain JWB57_16120 PF07498 Rho termination factor, N-terminal domain JWB57_16120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JWB57_16135 PF00216 Bacterial DNA-binding protein JWB57_16140 PF03483 B3/4 domain JWB57_16140 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JWB57_16140 PF01588 Putative tRNA binding domain JWB57_16140 PF03147 Ferredoxin-fold anticodon binding domain JWB57_16140 PF03484 tRNA synthetase B5 domain JWB57_16145 PF01409 tRNA synthetases class II core domain (F) JWB57_16145 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JWB57_16160 PF00453 Ribosomal protein L20 JWB57_16165 PF01632 Ribosomal protein L35 JWB57_16170 PF07690 Major Facilitator Superfamily JWB57_16175 PF09335 SNARE associated Golgi protein JWB57_16180 PF02798 Glutathione S-transferase, N-terminal domain JWB57_16180 PF00043 Glutathione S-transferase, C-terminal domain JWB57_16185 PF00707 Translation initiation factor IF-3, C-terminal domain JWB57_16185 PF05198 Translation initiation factor IF-3, N-terminal domain JWB57_16190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JWB57_16190 PF02824 TGS domain JWB57_16190 PF03129 Anticodon binding domain JWB57_16190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JWB57_16195 PF00501 AMP-binding enzyme JWB57_16195 PF13193 AMP-binding enzyme C-terminal domain JWB57_16200 PF04751 Protein of unknown function (DUF615) JWB57_16205 PF00381 PTS HPr component phosphorylation site JWB57_16210 PF03668 P-loop ATPase protein family JWB57_16215 PF02569 Pantoate-beta-alanine ligase JWB57_16220 PF02548 Ketopantoate hydroxymethyltransferase JWB57_16225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JWB57_16230 PF01743 Poly A polymerase head domain JWB57_16230 PF12626 Polymerase A arginine-rich C-terminus JWB57_16230 PF12627 Probable RNA and SrmB- binding site of polymerase A JWB57_16240 PF03819 MazG nucleotide pyrophosphohydrolase domain JWB57_16250 PF13291 ACT domain JWB57_16250 PF04607 Region found in RelA / SpoT proteins JWB57_16250 PF02824 TGS domain JWB57_16255 PF05958 tRNA (Uracil-5-)-methyltransferase JWB57_16265 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_16270 PF00672 HAMP domain JWB57_16270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_16270 PF00512 His Kinase A (phospho-acceptor) domain JWB57_16270 PF01627 Hpt domain JWB57_16270 PF00072 Response regulator receiver domain JWB57_16270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JWB57_16275 PF00378 Enoyl-CoA hydratase/isomerase JWB57_16280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JWB57_16280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JWB57_16285 PF01261 Xylose isomerase-like TIM barrel JWB57_16295 PF00106 short chain dehydrogenase JWB57_16300 PF02233 NAD(P) transhydrogenase beta subunit JWB57_16305 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JWB57_16310 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JWB57_16310 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JWB57_16315 PF00892 EamA-like transporter family JWB57_16325 PF07690 Major Facilitator Superfamily JWB57_16345 PF00394 Multicopper oxidase JWB57_16345 PF07732 Multicopper oxidase JWB57_16345 PF07731 Multicopper oxidase JWB57_16355 PF00072 Response regulator receiver domain JWB57_16355 PF00486 Transcriptional regulatory protein, C terminal JWB57_16360 PF00672 HAMP domain JWB57_16360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_16360 PF00512 His Kinase A (phospho-acceptor) domain JWB57_16365 PF04945 YHS domain JWB57_16440 PF00589 Phage integrase family JWB57_16445 PF01207 Dihydrouridine synthase (Dus) JWB57_16455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_16455 PF03466 LysR substrate binding domain JWB57_16465 PF00899 ThiF family JWB57_16470 PF00694 Aconitase C-terminal domain JWB57_16470 PF00330 Aconitase family (aconitate hydratase) JWB57_16475 PF01026 TatD related DNase JWB57_16490 PF00009 Elongation factor Tu GTP binding domain JWB57_16490 PF03144 Elongation factor Tu domain 2 JWB57_16490 PF16658 Class II release factor RF3, C-terminal domain JWB57_16510 PF00563 EAL domain JWB57_16510 PF00990 Diguanylate cyclase, GGDEF domain JWB57_16510 PF03707 Bacterial signalling protein N terminal repeat JWB57_16515 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JWB57_16515 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JWB57_16520 PF10369 Small subunit of acetolactate synthase JWB57_16525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JWB57_16525 PF00205 Thiamine pyrophosphate enzyme, central domain JWB57_16525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JWB57_16535 PF09334 tRNA synthetases class I (M) JWB57_16535 PF00133 tRNA synthetases class I (I, L, M and V) JWB57_16535 PF13603 Leucyl-tRNA synthetase, Domain 2 JWB57_16535 PF08264 Anticodon-binding domain of tRNA JWB57_16550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JWB57_16555 PF00005 ABC transporter JWB57_16555 PF12704 MacB-like periplasmic core domain JWB57_16555 PF02687 FtsX-like permease family JWB57_16560 PF02321 Outer membrane efflux protein JWB57_16575 PF00929 Exonuclease JWB57_16580 PF03193 RsgA GTPase JWB57_16590 PF00462 Glutaredoxin JWB57_16595 PF02556 Preprotein translocase subunit SecB JWB57_16605 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JWB57_16605 PF01926 50S ribosome-binding GTPase JWB57_16610 PF13360 PQQ-like domain JWB57_16620 PF03129 Anticodon binding domain JWB57_16620 PF13393 Histidyl-tRNA synthetase JWB57_16625 PF04551 GcpE protein JWB57_16630 PF13464 Domain of unknown function (DUF4115) JWB57_16640 PF04055 Radical SAM superfamily JWB57_16645 PF00334 Nucleoside diphosphate kinase JWB57_16650 PF04384 Iron-sulphur cluster assembly JWB57_16655 PF01569 PAP2 superfamily JWB57_16660 PF13439 Glycosyltransferase Family 4 JWB57_16660 PF00534 Glycosyl transferases group 1 JWB57_16665 PF17804 Tail specific protease N-terminal domain JWB57_16665 PF00595 PDZ domain JWB57_16665 PF11818 C-terminal domain of tail specific protease (DUF3340) JWB57_16665 PF03572 Peptidase family S41 JWB57_16670 PF00933 Glycosyl hydrolase family 3 N terminal domain JWB57_16680 PF00561 alpha/beta hydrolase fold JWB57_16685 PF00171 Aldehyde dehydrogenase family JWB57_16690 PF00171 Aldehyde dehydrogenase family JWB57_16695 PF01202 Shikimate kinase JWB57_16700 PF02447 GntP family permease JWB57_16705 PF01081 KDPG and KHG aldolase JWB57_16710 PF00920 Dehydratase family JWB57_16715 PF00871 Acetokinase family JWB57_16720 PF07085 DRTGG domain JWB57_16720 PF01515 Phosphate acetyl/butaryl transferase JWB57_16725 PF05681 Fumarate hydratase (Fumerase) JWB57_16725 PF05683 Fumarase C-terminus JWB57_16740 PF07724 AAA domain (Cdc48 subfamily) JWB57_16740 PF10431 C-terminal, D2-small domain, of ClpB protein JWB57_16740 PF06689 ClpX C4-type zinc finger JWB57_16745 PF00574 Clp protease JWB57_16750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JWB57_16750 PF05698 Bacterial trigger factor protein (TF) C-terminus JWB57_16750 PF05697 Bacterial trigger factor protein (TF) JWB57_16755 PF07715 TonB-dependent Receptor Plug Domain JWB57_16755 PF00593 TonB dependent receptor JWB57_16760 PF13640 2OG-Fe(II) oxygenase superfamily JWB57_16760 PF18331 PKHD-type hydroxylase C-terminal domain JWB57_16765 PF08502 LeuA allosteric (dimerisation) domain JWB57_16765 PF00682 HMGL-like JWB57_16770 PF00561 alpha/beta hydrolase fold JWB57_16775 PF00561 alpha/beta hydrolase fold JWB57_16775 PF07021 Methionine biosynthesis protein MetW JWB57_16785 PF01725 Ham1 family JWB57_16795 PF02416 mttA/Hcf106 family JWB57_16800 PF02416 mttA/Hcf106 family JWB57_16805 PF00902 Sec-independent protein translocase protein (TatC) JWB57_16825 PF01790 Prolipoprotein diacylglyceryl transferase JWB57_16840 PF00303 Thymidylate synthase JWB57_16845 PF00186 Dihydrofolate reductase JWB57_16855 PF01625 Peptide methionine sulfoxide reductase JWB57_16865 PF01618 MotA/TolQ/ExbB proton channel family JWB57_16875 PF01842 ACT domain JWB57_16875 PF00551 Formyl transferase JWB57_16885 PF00171 Aldehyde dehydrogenase family JWB57_16890 PF00830 Ribosomal L28 family JWB57_16895 PF00471 Ribosomal protein L33 JWB57_16900 PF00999 Sodium/hydrogen exchanger family JWB57_16900 PF02254 TrkA-N domain JWB57_16920 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JWB57_16925 PF00580 UvrD/REP helicase N-terminal domain JWB57_16925 PF13361 UvrD-like helicase C-terminal domain JWB57_16940 PF01751 Toprim domain JWB57_16940 PF01131 DNA topoisomerase JWB57_16940 PF01396 Topoisomerase DNA binding C4 zinc finger JWB57_16940 PF08272 Topoisomerase I zinc-ribbon-like JWB57_16950 PF01638 HxlR-like helix-turn-helix JWB57_16955 PF08240 Alcohol dehydrogenase GroES-like domain JWB57_16955 PF00107 Zinc-binding dehydrogenase JWB57_16960 PF04102 SlyX JWB57_16965 PF00005 ABC transporter JWB57_16965 PF16326 ABC transporter C-terminal domain JWB57_16965 PF12848 ABC transporter JWB57_16970 PF01810 LysE type translocator JWB57_16975 PF03279 Bacterial lipid A biosynthesis acyltransferase JWB57_16985 PF00375 Sodium:dicarboxylate symporter family JWB57_16995 PF01118 Semialdehyde dehydrogenase, NAD binding domain JWB57_16995 PF02774 Semialdehyde dehydrogenase, dimerisation domain JWB57_17015 PF01416 tRNA pseudouridine synthase JWB57_17025 PF01176 Translation initiation factor 1A / IF-1 JWB57_17040 PF00180 Isocitrate/isopropylmalate dehydrogenase JWB57_17050 PF00694 Aconitase C-terminal domain JWB57_17055 PF00330 Aconitase family (aconitate hydratase) JWB57_17065 PF03466 LysR substrate binding domain JWB57_17065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_17075 PF00293 NUDIX domain JWB57_17080 PF05524 PEP-utilising enzyme, N-terminal JWB57_17080 PF00391 PEP-utilising enzyme, mobile domain JWB57_17080 PF02896 PEP-utilising enzyme, TIM barrel domain JWB57_17080 PF01590 GAF domain JWB57_17085 PF00141 Peroxidase JWB57_17090 PF12706 Beta-lactamase superfamily domain JWB57_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_17095 PF03466 LysR substrate binding domain JWB57_17105 PF02798 Glutathione S-transferase, N-terminal domain JWB57_17110 PF13280 WYL domain JWB57_17110 PF08279 HTH domain JWB57_17115 PF13419 Haloacid dehalogenase-like hydrolase JWB57_17120 PF01479 S4 domain JWB57_17120 PF00849 RNA pseudouridylate synthase JWB57_17130 PF12111 Polyribonucleotide phosphorylase C terminal JWB57_17130 PF10150 Ribonuclease E/G family JWB57_17130 PF00575 S1 RNA binding domain JWB57_17135 PF00501 AMP-binding enzyme JWB57_17135 PF13193 AMP-binding enzyme C-terminal domain JWB57_17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_17150 PF03466 LysR substrate binding domain JWB57_17155 PF00106 short chain dehydrogenase JWB57_17160 PF04055 Radical SAM superfamily JWB57_17160 PF06969 HemN C-terminal domain JWB57_17170 PF01554 MatE JWB57_17175 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JWB57_17175 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_17175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_17180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_17180 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JWB57_17185 PF03109 ABC1 family JWB57_17190 PF01197 Ribosomal protein L31 JWB57_17200 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JWB57_17210 PF13247 4Fe-4S dicluster domain JWB57_17210 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JWB57_17210 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_17220 PF03884 DNA gyrase inhibitor YacG JWB57_17225 PF00753 Metallo-beta-lactamase superfamily JWB57_17230 PF00762 Ferrochelatase JWB57_17240 PF01177 Asp/Glu/Hydantoin racemase JWB57_17260 PF01206 Sulfurtransferase TusA JWB57_17265 PF00571 CBS domain JWB57_17265 PF03471 Transporter associated domain JWB57_17270 PF00795 Carbon-nitrogen hydrolase JWB57_17275 PF01588 Putative tRNA binding domain JWB57_17285 PF07963 Prokaryotic N-terminal methylation motif JWB57_17285 PF08334 Type II secretion system (T2SS), protein G JWB57_17290 PF00482 Type II secretion system (T2SS), protein F JWB57_17295 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JWB57_17295 PF17764 3′ DNA-binding domain (3′BD) JWB57_17295 PF18074 Primosomal protein N C-terminal domain JWB57_17295 PF00270 DEAD/DEAH box helicase JWB57_17295 PF00271 Helicase conserved C-terminal domain JWB57_17300 PF02254 TrkA-N domain JWB57_17300 PF00999 Sodium/hydrogen exchanger family JWB57_17305 PF01430 Hsp33 protein JWB57_17315 PF00226 DnaJ domain JWB57_17315 PF01556 DnaJ C terminal domain JWB57_17325 PF01544 CorA-like Mg2+ transporter protein JWB57_17330 PF00013 KH domain JWB57_17330 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JWB57_17330 PF01138 3' exoribonuclease family, domain 1 JWB57_17330 PF00575 S1 RNA binding domain JWB57_17330 PF03725 3' exoribonuclease family, domain 2 JWB57_17335 PF00312 Ribosomal protein S15 JWB57_17340 PF00144 Beta-lactamase JWB57_17345 PF13538 UvrD-like helicase C-terminal domain JWB57_17350 PF00580 UvrD/REP helicase N-terminal domain JWB57_17350 PF12705 PD-(D/E)XK nuclease superfamily JWB57_17350 PF13361 UvrD-like helicase C-terminal domain JWB57_17355 PF17946 RecC C-terminal domain JWB57_17365 PF03976 Polyphosphate kinase 2 (PPK2) JWB57_17375 PF01209 ubiE/COQ5 methyltransferase family JWB57_17385 PF03109 ABC1 family JWB57_17390 PF01494 FAD binding domain JWB57_17395 PF01502 Phosphoribosyl-AMP cyclohydrolase JWB57_17410 PF00361 Proton-conducting membrane transporter JWB57_17410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JWB57_17410 PF13244 Domain of unknown function (DUF4040) JWB57_17410 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter JWB57_17415 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JWB57_17420 PF00361 Proton-conducting membrane transporter JWB57_17425 PF01899 Na+/H+ ion antiporter subunit JWB57_17430 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) JWB57_17435 PF03334 Na+/H+ antiporter subunit JWB57_17440 PF02033 Ribosome-binding factor A JWB57_17445 PF11987 Translation-initiation factor 2 JWB57_17445 PF04760 Translation initiation factor IF-2, N-terminal region JWB57_17445 PF00009 Elongation factor Tu GTP binding domain JWB57_17445 PF08364 Bacterial translation initiation factor IF-2 associated region JWB57_17450 PF13184 NusA-like KH domain JWB57_17450 PF08529 NusA N-terminal domain JWB57_17450 PF00575 S1 RNA binding domain JWB57_17455 PF17384 RimP C-terminal SH3 domain JWB57_17455 PF02576 RimP N-terminal domain JWB57_17470 PF03840 Preprotein translocase SecG subunit JWB57_17475 PF00121 Triosephosphate isomerase JWB57_17480 PF00437 Type II/IV secretion system protein JWB57_17480 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JWB57_17485 PF00482 Type II secretion system (T2SS), protein F JWB57_17495 PF01121 Dephospho-CoA kinase JWB57_17505 PF08032 RNA 2'-O ribose methyltransferase substrate binding JWB57_17505 PF00588 SpoU rRNA Methylase family JWB57_17510 PF06865 Pyrimidine/purine nucleoside phosphorylase JWB57_17520 PF02463 RecF/RecN/SMC N terminal domain JWB57_17525 PF02622 Uncharacterized ACR, COG1678 JWB57_17530 PF03652 Holliday junction resolvase JWB57_17535 PF13533 Biotin-lipoyl like JWB57_17560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JWB57_17560 PF12833 Helix-turn-helix domain JWB57_17560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JWB57_17560 PF02805 Metal binding domain of Ada JWB57_17565 PF01066 CDP-alcohol phosphatidyltransferase JWB57_17575 PF01541 GIY-YIG catalytic domain JWB57_17575 PF02151 UvrB/uvrC motif JWB57_17575 PF08459 UvrC Helix-hairpin-helix N-terminal JWB57_17595 PF00378 Enoyl-CoA hydratase/isomerase JWB57_17595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JWB57_17595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JWB57_17600 PF02803 Thiolase, C-terminal domain JWB57_17600 PF00108 Thiolase, N-terminal domain JWB57_17615 PF00376 MerR family regulatory protein JWB57_17615 PF09278 MerR, DNA binding JWB57_17625 PF01323 DSBA-like thioredoxin domain JWB57_17640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_17640 PF00183 Hsp90 protein JWB57_17655 PF13726 Na+-H+ antiporter family JWB57_17655 PF03553 Na+/H+ antiporter family JWB57_17680 PF04998 RNA polymerase Rpb1, domain 5 JWB57_17680 PF05000 RNA polymerase Rpb1, domain 4 JWB57_17680 PF00623 RNA polymerase Rpb1, domain 2 JWB57_17680 PF04997 RNA polymerase Rpb1, domain 1 JWB57_17680 PF04983 RNA polymerase Rpb1, domain 3 JWB57_17685 PF04563 RNA polymerase beta subunit JWB57_17685 PF04561 RNA polymerase Rpb2, domain 2 JWB57_17685 PF04565 RNA polymerase Rpb2, domain 3 JWB57_17685 PF10385 RNA polymerase beta subunit external 1 domain JWB57_17685 PF00562 RNA polymerase Rpb2, domain 6 JWB57_17685 PF04560 RNA polymerase Rpb2, domain 7 JWB57_17690 PF16320 Ribosomal protein L7/L12 dimerisation domain JWB57_17690 PF00542 Ribosomal protein L7/L12 C-terminal domain JWB57_17695 PF00466 Ribosomal protein L10 JWB57_17700 PF00687 Ribosomal protein L1p/L10e family JWB57_17705 PF00298 Ribosomal protein L11, RNA binding domain JWB57_17705 PF03946 Ribosomal protein L11, N-terminal domain JWB57_17710 PF00467 KOW motif JWB57_17710 PF02357 Transcription termination factor nusG JWB57_17715 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JWB57_17725 PF03143 Elongation factor Tu C-terminal domain JWB57_17725 PF03144 Elongation factor Tu domain 2 JWB57_17725 PF00009 Elongation factor Tu GTP binding domain JWB57_17750 PF04715 Anthranilate synthase component I, N terminal region JWB57_17750 PF00425 chorismate binding enzyme JWB57_17755 PF13419 Haloacid dehalogenase-like hydrolase JWB57_17760 PF12401 Protein of unknown function (DUF2662) JWB57_17760 PF00498 FHA domain JWB57_17765 PF03958 Bacterial type II/III secretion system short domain JWB57_17765 PF00263 Bacterial type II and III secretion system protein JWB57_17815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JWB57_17815 PF03900 Porphobilinogen deaminase, C-terminal domain JWB57_17820 PF04397 LytTr DNA-binding domain JWB57_17820 PF00072 Response regulator receiver domain JWB57_17825 PF06580 Histidine kinase JWB57_17825 PF07694 5TMR of 5TMR-LYT JWB57_17825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_17830 PF00206 Lyase JWB57_17830 PF14698 Argininosuccinate lyase C-terminal JWB57_17835 PF04362 Bacterial Fe(2+) trafficking JWB57_17840 PF01895 PhoU domain JWB57_17845 PF02321 Outer membrane efflux protein JWB57_17850 PF00892 EamA-like transporter family JWB57_17865 PF13667 ThiC-associated domain JWB57_17865 PF01964 Radical SAM ThiC family JWB57_17875 PF00149 Calcineurin-like phosphoesterase JWB57_17880 PF01258 Prokaryotic dksA/traR C4-type zinc finger JWB57_17885 PF00749 tRNA synthetases class I (E and Q), catalytic domain JWB57_17890 PF01098 Cell cycle protein JWB57_17895 PF02875 Mur ligase family, glutamate ligase domain JWB57_17895 PF08245 Mur ligase middle domain JWB57_17905 PF02421 Ferrous iron transport protein B JWB57_17905 PF07670 Nucleoside recognition JWB57_17905 PF07664 Ferrous iron transport protein B C terminus JWB57_17915 PF00589 Phage integrase family JWB57_17915 PF02899 Phage integrase, N-terminal SAM-like domain JWB57_17920 PF10411 Disulfide bond isomerase protein N-terminus JWB57_17920 PF13098 Thioredoxin-like domain JWB57_17925 PF01842 ACT domain JWB57_17925 PF03447 Homoserine dehydrogenase, NAD binding domain JWB57_17925 PF00742 Homoserine dehydrogenase JWB57_17930 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_17935 PF00768 D-alanyl-D-alanine carboxypeptidase JWB57_17940 PF00196 Bacterial regulatory proteins, luxR family JWB57_17940 PF00072 Response regulator receiver domain JWB57_17945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_17945 PF00512 His Kinase A (phospho-acceptor) domain JWB57_17950 PF02954 Bacterial regulatory protein, Fis family JWB57_17950 PF00072 Response regulator receiver domain JWB57_17950 PF00158 Sigma-54 interaction domain JWB57_17955 PF00595 PDZ domain JWB57_17955 PF03572 Peptidase family S41 JWB57_17960 PF01676 Metalloenzyme superfamily JWB57_17960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JWB57_17965 PF03739 Lipopolysaccharide export system permease LptF/LptG JWB57_17975 PF00883 Cytosol aminopeptidase family, catalytic domain JWB57_17975 PF02789 Cytosol aminopeptidase family, N-terminal domain JWB57_17995 PF00677 Lumazine binding domain JWB57_18005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JWB57_18005 PF01872 RibD C-terminal domain JWB57_18010 PF03477 ATP cone domain JWB57_18015 PF00909 Ammonium Transporter Family JWB57_18020 PF00543 Nitrogen regulatory protein P-II JWB57_18040 PF00916 Sulfate permease family JWB57_18040 PF01740 STAS domain JWB57_18055 PF01252 Signal peptidase (SPase) II JWB57_18065 PF13411 MerR HTH family regulatory protein JWB57_18075 PF03960 ArsC family JWB57_18080 PF01022 Bacterial regulatory protein, arsR family JWB57_18090 PF01758 Sodium Bile acid symporter family JWB57_18095 PF03358 NADPH-dependent FMN reductase JWB57_18100 PF07992 Pyridine nucleotide-disulphide oxidoreductase JWB57_18125 PF00665 Integrase core domain JWB57_18140 PF00392 Bacterial regulatory proteins, gntR family JWB57_18140 PF00155 Aminotransferase class I and II JWB57_18150 PF00701 Dihydrodipicolinate synthetase family JWB57_18160 PF03573 outer membrane porin, OprD family JWB57_18165 PF00719 Inorganic pyrophosphatase JWB57_18180 PF00501 AMP-binding enzyme JWB57_18180 PF13193 AMP-binding enzyme C-terminal domain JWB57_18185 PF03989 DNA gyrase C-terminal domain, beta-propeller JWB57_18185 PF00521 DNA gyrase/topoisomerase IV, subunit A JWB57_18190 PF07690 Major Facilitator Superfamily JWB57_18195 PF03458 UPF0126 domain JWB57_18200 PF02810 SEC-C motif JWB57_18205 PF03741 Integral membrane protein TerC family JWB57_18205 PF03471 Transporter associated domain JWB57_18210 PF03641 Possible lysine decarboxylase JWB57_18215 PF07690 Major Facilitator Superfamily JWB57_18225 PF11799 impB/mucB/samB family C-terminal domain JWB57_18225 PF00817 impB/mucB/samB family JWB57_18225 PF11798 IMS family HHH motif JWB57_18240 PF11842 Domain of unknown function (DUF3362) JWB57_18240 PF08497 Radical SAM N-terminal JWB57_18240 PF04055 Radical SAM superfamily JWB57_18260 PF03358 NADPH-dependent FMN reductase JWB57_18270 PF00291 Pyridoxal-phosphate dependent enzyme JWB57_18330 PF01327 Polypeptide deformylase JWB57_18340 PF17782 DprA winged helix domain JWB57_18340 PF02481 DNA recombination-mediator protein A JWB57_18345 PF01300 Telomere recombination JWB57_18350 PF00892 EamA-like transporter family JWB57_18355 PF00440 Bacterial regulatory proteins, tetR family JWB57_18360 PF07690 Major Facilitator Superfamily JWB57_18370 PF00255 Glutathione peroxidase JWB57_18380 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JWB57_18385 PF02874 ATP synthase alpha/beta family, beta-barrel domain JWB57_18385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JWB57_18390 PF00231 ATP synthase JWB57_18395 PF00306 ATP synthase alpha/beta chain, C terminal domain JWB57_18395 PF02874 ATP synthase alpha/beta family, beta-barrel domain JWB57_18395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JWB57_18400 PF00213 ATP synthase delta (OSCP) subunit JWB57_18405 PF00430 ATP synthase B/B' CF(0) JWB57_18410 PF00137 ATP synthase subunit C JWB57_18415 PF00119 ATP synthase A chain JWB57_18435 PF00005 ABC transporter JWB57_18440 PF00950 ABC 3 transport family JWB57_18445 PF01810 LysE type translocator JWB57_18450 PF04261 Dyp-type peroxidase family JWB57_18455 PF00390 Malic enzyme, N-terminal domain JWB57_18455 PF03949 Malic enzyme, NAD binding domain JWB57_18460 PF03485 Arginyl tRNA synthetase N terminal domain JWB57_18460 PF05746 DALR anticodon binding domain JWB57_18460 PF00750 tRNA synthetases class I (R) JWB57_18480 PF05726 Pirin C-terminal cupin domain JWB57_18480 PF02678 Pirin JWB57_18490 PF03551 Transcriptional regulator PadR-like family JWB57_18495 PF13427 Domain of unknown function (DUF4111) JWB57_18495 PF01909 Nucleotidyltransferase domain JWB57_18500 PF00117 Glutamine amidotransferase class-I JWB57_18500 PF00958 GMP synthase C terminal domain JWB57_18500 PF02540 NAD synthase JWB57_18505 PF04286 Protein of unknown function (DUF445) JWB57_18510 PF07681 DoxX JWB57_18515 PF09335 SNARE associated Golgi protein JWB57_18530 PF13614 AAA domain JWB57_18540 PF01722 BolA-like protein JWB57_18555 PF01648 4'-phosphopantetheinyl transferase superfamily JWB57_18560 PF12697 Alpha/beta hydrolase family JWB57_18575 PF13193 AMP-binding enzyme C-terminal domain JWB57_18575 PF00668 Condensation domain JWB57_18575 PF00501 AMP-binding enzyme JWB57_18575 PF00550 Phosphopantetheine attachment site JWB57_18575 PF00975 Thioesterase domain JWB57_18580 PF16197 Ketoacyl-synthetase C-terminal extension JWB57_18580 PF00109 Beta-ketoacyl synthase, N-terminal domain JWB57_18580 PF02801 Beta-ketoacyl synthase, C-terminal domain JWB57_18580 PF08242 Methyltransferase domain JWB57_18580 PF00550 Phosphopantetheine attachment site JWB57_18580 PF14765 Polyketide synthase dehydratase JWB57_18580 PF00975 Thioesterase domain JWB57_18585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_18585 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_18585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_18590 PF00501 AMP-binding enzyme JWB57_18595 PF00196 Bacterial regulatory proteins, luxR family JWB57_18595 PF03472 Autoinducer binding domain JWB57_18605 PF00765 Autoinducer synthase JWB57_18610 PF07690 Major Facilitator Superfamily JWB57_18610 PF00083 Sugar (and other) transporter JWB57_18615 PF00378 Enoyl-CoA hydratase/isomerase JWB57_18620 PF00378 Enoyl-CoA hydratase/isomerase JWB57_18625 PF02770 Acyl-CoA dehydrogenase, middle domain JWB57_18625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JWB57_18625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JWB57_18630 PF00501 AMP-binding enzyme JWB57_18630 PF13193 AMP-binding enzyme C-terminal domain JWB57_18635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JWB57_18635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JWB57_18640 PF00171 Aldehyde dehydrogenase family JWB57_18650 PF00324 Amino acid permease JWB57_18655 PF00324 Amino acid permease JWB57_18660 PF01042 Endoribonuclease L-PSP JWB57_18665 PF01168 Alanine racemase, N-terminal domain JWB57_18665 PF00842 Alanine racemase, C-terminal domain JWB57_18670 PF01266 FAD dependent oxidoreductase JWB57_18675 PF01037 Lrp/AsnC ligand binding domain JWB57_18685 PF07715 TonB-dependent Receptor Plug Domain JWB57_18685 PF00593 TonB dependent receptor JWB57_18700 PF00849 RNA pseudouridylate synthase JWB57_18715 PF00872 Transposase, Mutator family JWB57_18725 PF13737 Transposase DDE domain JWB57_18745 PF00694 Aconitase C-terminal domain JWB57_18745 PF00330 Aconitase family (aconitate hydratase) JWB57_18750 PF00285 Citrate synthase, C-terminal domain JWB57_18760 PF07729 FCD domain JWB57_18760 PF00392 Bacterial regulatory proteins, gntR family JWB57_18770 PF00155 Aminotransferase class I and II JWB57_18775 PF01565 FAD binding domain JWB57_18775 PF09330 D-lactate dehydrogenase, membrane binding JWB57_18780 PF01070 FMN-dependent dehydrogenase JWB57_18785 PF07729 FCD domain JWB57_18785 PF00392 Bacterial regulatory proteins, gntR family JWB57_18790 PF02652 L-lactate permease JWB57_18795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JWB57_18795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JWB57_18795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JWB57_18795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JWB57_18800 PF16363 GDP-mannose 4,6 dehydratase JWB57_18805 PF00342 Phosphoglucose isomerase JWB57_18810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JWB57_18810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JWB57_18810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JWB57_18815 PF00483 Nucleotidyl transferase JWB57_18820 PF02719 Polysaccharide biosynthesis protein JWB57_18825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JWB57_18830 PF17836 PglD N-terminal domain JWB57_18830 PF14602 Hexapeptide repeat of succinyl-transferase JWB57_18830 PF00132 Bacterial transferase hexapeptide (six repeats) JWB57_18840 PF13737 Transposase DDE domain JWB57_18865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JWB57_18865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JWB57_18865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JWB57_18870 PF02350 UDP-N-acetylglucosamine 2-epimerase JWB57_18875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JWB57_18875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JWB57_18875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JWB57_18880 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JWB57_18880 PF10531 SLBB domain JWB57_18880 PF02563 Polysaccharide biosynthesis/export protein JWB57_18885 PF01451 Low molecular weight phosphotyrosine protein phosphatase JWB57_18890 PF02706 Chain length determinant protein JWB57_18890 PF13807 G-rich domain on putative tyrosine kinase JWB57_18890 PF13614 AAA domain JWB57_18895 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JWB57_18895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JWB57_18900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JWB57_18900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JWB57_18905 PF03023 Lipid II flippase MurJ JWB57_18910 PF01510 N-acetylmuramoyl-L-alanine amidase JWB57_18915 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JWB57_18915 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JWB57_18925 PF04185 Phosphoesterase family JWB57_18925 PF05506 Domain of unknown function (DUF756) JWB57_18930 PF03725 3' exoribonuclease family, domain 2 JWB57_18930 PF01138 3' exoribonuclease family, domain 1 JWB57_18935 PF00487 Fatty acid desaturase JWB57_18940 PF00175 Oxidoreductase NAD-binding domain JWB57_18945 PF00440 Bacterial regulatory proteins, tetR family JWB57_18955 PF01323 DSBA-like thioredoxin domain JWB57_18965 PF13419 Haloacid dehalogenase-like hydrolase JWB57_18970 PF00106 short chain dehydrogenase JWB57_18985 PF00583 Acetyltransferase (GNAT) family JWB57_18985 PF00696 Amino acid kinase family JWB57_18990 PF09084 NMT1/THI5 like JWB57_18995 PF09084 NMT1/THI5 like JWB57_19000 PF00296 Luciferase-like monooxygenase JWB57_19005 PF00528 Binding-protein-dependent transport system inner membrane component JWB57_19010 PF00005 ABC transporter JWB57_19015 PF00440 Bacterial regulatory proteins, tetR family JWB57_19015 PF08362 YcdC-like protein, C-terminal region JWB57_19020 PF01048 Phosphorylase superfamily JWB57_19030 PF01687 Riboflavin kinase JWB57_19030 PF06574 FAD synthetase JWB57_19035 PF06827 Zinc finger found in FPG and IleRS JWB57_19035 PF00133 tRNA synthetases class I (I, L, M and V) JWB57_19035 PF08264 Anticodon-binding domain of tRNA JWB57_19040 PF01252 Signal peptidase (SPase) II JWB57_19045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JWB57_19085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JWB57_19090 PF07859 alpha/beta hydrolase fold JWB57_19110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JWB57_19110 PF03466 LysR substrate binding domain JWB57_19115 PF01025 GrpE JWB57_19120 PF00012 Hsp70 protein JWB57_19140 PF13406 Transglycosylase SLT domain JWB57_19150 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JWB57_19150 PF02222 ATP-grasp domain JWB57_19155 PF00731 AIR carboxylase JWB57_19165 PF01225 Mur ligase family, catalytic domain JWB57_19165 PF02875 Mur ligase family, glutamate ligase domain JWB57_19165 PF08245 Mur ligase middle domain JWB57_19175 PF01569 PAP2 superfamily JWB57_19180 PF03741 Integral membrane protein TerC family JWB57_19190 PF03738 Glutathionylspermidine synthase preATP-grasp JWB57_19195 PF00355 Rieske [2Fe-2S] domain JWB57_19200 PF01979 Amidohydrolase family JWB57_19205 PF00156 Phosphoribosyl transferase domain JWB57_19215 PF13098 Thioredoxin-like domain JWB57_19215 PF10411 Disulfide bond isomerase protein N-terminus JWB57_19220 PF01545 Cation efflux family JWB57_19220 PF16916 Dimerisation domain of Zinc Transporter JWB57_19225 PF02583 Metal-sensitive transcriptional repressor JWB57_19230 PF10396 GTP-binding protein TrmE N-terminus JWB57_19230 PF01926 50S ribosome-binding GTPase JWB57_19230 PF12631 MnmE helical domain JWB57_19235 PF14849 YidC periplasmic domain JWB57_19235 PF02096 60Kd inner membrane protein JWB57_19240 PF01809 Putative membrane protein insertion efficiency factor JWB57_19245 PF00825 Ribonuclease P JWB57_19250 PF00468 Ribosomal protein L34 JWB57_19255 PF00308 Bacterial dnaA protein JWB57_19255 PF08299 Bacterial dnaA protein helix-turn-helix JWB57_19255 PF11638 DnaA N-terminal domain JWB57_19260 PF00712 DNA polymerase III beta subunit, N-terminal domain JWB57_19260 PF02767 DNA polymerase III beta subunit, central domain JWB57_19260 PF02768 DNA polymerase III beta subunit, C-terminal domain JWB57_19265 PF02463 RecF/RecN/SMC N terminal domain JWB57_19270 PF01751 Toprim domain JWB57_19270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JWB57_19270 PF18053 DNA gyrase B subunit insert domain JWB57_19270 PF00204 DNA gyrase B JWB57_19270 PF00986 DNA gyrase B subunit, carboxyl terminus JWB57_19280 PF09335 SNARE associated Golgi protein JWB57_19285 PF12848 ABC transporter JWB57_19285 PF00005 ABC transporter JWB57_19305 PF01521 Iron-sulphur cluster biosynthesis JWB57_19310 PF00561 alpha/beta hydrolase fold JWB57_19315 PF03702 Anhydro-N-acetylmuramic acid kinase JWB57_19320 PF00579 tRNA synthetases class I (W and Y) JWB57_19390 PF00593 TonB dependent receptor JWB57_19390 PF07715 TonB-dependent Receptor Plug Domain JWB57_19415 PF13614 AAA domain JWB57_19450 PF00816 H-NS histone family JWB57_19455 PF00565 Staphylococcal nuclease homologue JWB57_19520 PF13438 Domain of unknown function (DUF4113) JWB57_19520 PF00817 impB/mucB/samB family JWB57_19520 PF11799 impB/mucB/samB family C-terminal domain JWB57_19520 PF11798 IMS family HHH motif JWB57_19540 PF06122 Conjugative relaxosome accessory transposon protein JWB57_19555 PF06986 Type-1V conjugative transfer system mating pair stabilisation JWB57_19565 PF06834 TraU protein JWB57_19600 PF13098 Thioredoxin-like domain JWB57_19600 PF10411 Disulfide bond isomerase protein N-terminus JWB57_19635 PF01464 Transglycosylase SLT domain JWB57_19645 PF00239 Resolvase, N terminal domain JWB57_19645 PF02796 Helix-turn-helix domain of resolvase JWB57_19650 PF13936 Helix-turn-helix domain JWB57_19650 PF00665 Integrase core domain JWB57_19655 PF01636 Phosphotransferase enzyme family JWB57_19660 PF13936 Helix-turn-helix domain JWB57_19660 PF00665 Integrase core domain JWB57_19680 PF18272 single-stranded DNA binding TraI N-terminal subdomain JWB57_19680 PF07057 DNA helicase TraI JWB57_19680 PF18340 DNA relaxase TraI 2B/2B-like domain JWB57_19680 PF08751 TrwC relaxase JWB57_19710 PF01556 DnaJ C terminal domain JWB57_19710 PF00684 DnaJ central domain JWB57_19710 PF00226 DnaJ domain JWB57_19725 PF13495 Phage integrase, N-terminal SAM-like domain JWB57_19725 PF00589 Phage integrase family JWB57_19730 PF10706 Aminoglycoside-2''-adenylyltransferase JWB57_19735 PF07690 Major Facilitator Superfamily JWB57_19745 PF01636 Phosphotransferase enzyme family JWB57_19750 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase JWB57_19755 PF13495 Phage integrase, N-terminal SAM-like domain JWB57_19755 PF00589 Phage integrase family JWB57_19760 PF10706 Aminoglycoside-2''-adenylyltransferase JWB57_19765 PF07690 Major Facilitator Superfamily JWB57_19775 PF01636 Phosphotransferase enzyme family JWB57_19780 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase JWB57_19800 PF00186 Dihydrofolate reductase JWB57_19805 PF00893 Small Multidrug Resistance protein JWB57_19810 PF00809 Pterin binding enzyme JWB57_19900 PF05816 Toxic anion resistance protein (TelA) JWB57_19915 PF02350 UDP-N-acetylglucosamine 2-epimerase JWB57_20010 PF02224 Cytidylate kinase JWB57_20240 PF00699 Urease beta subunit JWB57_20280 PF06750 Bacterial Peptidase A24 N-terminal domain JWB57_20280 PF01478 Type IV leader peptidase family