locus-tag class description L2M54_00005 PF00308 Bacterial dnaA protein L2M54_00005 PF08299 Bacterial dnaA protein helix-turn-helix L2M54_00005 PF11638 DnaA N-terminal domain L2M54_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain L2M54_00010 PF02767 DNA polymerase III beta subunit, central domain L2M54_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain L2M54_00015 PF02463 RecF/RecN/SMC N terminal domain L2M54_00020 PF00204 DNA gyrase B L2M54_00020 PF00986 DNA gyrase B subunit, carboxyl terminus L2M54_00020 PF18053 DNA gyrase B subunit insert domain L2M54_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_00020 PF01751 Toprim domain L2M54_00030 PF09335 SNARE associated Golgi protein L2M54_00035 PF00005 ABC transporter L2M54_00035 PF12848 ABC transporter L2M54_00055 PF01521 Iron-sulphur cluster biosynthesis L2M54_00060 PF00561 alpha/beta hydrolase fold L2M54_00065 PF03702 Anhydro-N-acetylmuramic acid kinase L2M54_00070 PF00579 tRNA synthetases class I (W and Y) L2M54_00110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2M54_00115 PF01252 Signal peptidase (SPase) II L2M54_00120 PF08264 Anticodon-binding domain of tRNA L2M54_00120 PF00133 tRNA synthetases class I (I, L, M and V) L2M54_00120 PF06827 Zinc finger found in FPG and IleRS L2M54_00125 PF06574 FAD synthetase L2M54_00125 PF01687 Riboflavin kinase L2M54_00135 PF01048 Phosphorylase superfamily L2M54_00140 PF00440 Bacterial regulatory proteins, tetR family L2M54_00140 PF08362 YcdC-like protein, C-terminal region L2M54_00145 PF00005 ABC transporter L2M54_00150 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_00155 PF00296 Luciferase-like monooxygenase L2M54_00160 PF09084 NMT1/THI5 like L2M54_00165 PF09084 NMT1/THI5 like L2M54_00170 PF00696 Amino acid kinase family L2M54_00170 PF00583 Acetyltransferase (GNAT) family L2M54_00185 PF00106 short chain dehydrogenase L2M54_00190 PF13419 Haloacid dehalogenase-like hydrolase L2M54_00200 PF01323 DSBA-like thioredoxin domain L2M54_00205 PF08360 QacR-like protein, C-terminal region L2M54_00205 PF00440 Bacterial regulatory proteins, tetR family L2M54_00210 PF00440 Bacterial regulatory proteins, tetR family L2M54_00215 PF00175 Oxidoreductase NAD-binding domain L2M54_00220 PF00487 Fatty acid desaturase L2M54_00225 PF03725 3' exoribonuclease family, domain 2 L2M54_00225 PF01138 3' exoribonuclease family, domain 1 L2M54_00230 PF04185 Phosphoesterase family L2M54_00230 PF05506 Domain of unknown function (DUF756) L2M54_00240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain L2M54_00240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain L2M54_00245 PF01510 N-acetylmuramoyl-L-alanine amidase L2M54_00250 PF03023 Lipid II flippase MurJ L2M54_00255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2M54_00255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase L2M54_00260 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase L2M54_00260 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2M54_00265 PF13807 G-rich domain on putative tyrosine kinase L2M54_00265 PF02706 Chain length determinant protein L2M54_00265 PF13614 AAA domain L2M54_00270 PF01451 Low molecular weight phosphotyrosine protein phosphatase L2M54_00275 PF02563 Polysaccharide biosynthesis/export protein L2M54_00275 PF18412 Outer-membrane lipoprotein Wza C-terminal domain L2M54_00275 PF10531 SLBB domain L2M54_00280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain L2M54_00280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain L2M54_00280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain L2M54_00290 PF00535 Glycosyl transferase family 2 L2M54_00295 PF13439 Glycosyltransferase Family 4 L2M54_00295 PF00534 Glycosyl transferases group 1 L2M54_00305 PF13439 Glycosyltransferase Family 4 L2M54_00305 PF00534 Glycosyl transferases group 1 L2M54_00310 PF13477 Glycosyl transferase 4-like L2M54_00310 PF00534 Glycosyl transferases group 1 L2M54_00315 PF02397 Bacterial sugar transferase L2M54_00320 PF00483 Nucleotidyl transferase L2M54_00325 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain L2M54_00325 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain L2M54_00325 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain L2M54_00330 PF00342 Phosphoglucose isomerase L2M54_00335 PF16363 GDP-mannose 4,6 dehydratase L2M54_00345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L2M54_00345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L2M54_00345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L2M54_00345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L2M54_00350 PF02652 L-lactate permease L2M54_00355 PF07729 FCD domain L2M54_00355 PF00392 Bacterial regulatory proteins, gntR family L2M54_00360 PF01070 FMN-dependent dehydrogenase L2M54_00365 PF01565 FAD binding domain L2M54_00365 PF09330 D-lactate dehydrogenase, membrane binding L2M54_00370 PF00155 Aminotransferase class I and II L2M54_00380 PF07729 FCD domain L2M54_00380 PF00392 Bacterial regulatory proteins, gntR family L2M54_00390 PF00285 Citrate synthase, C-terminal domain L2M54_00395 PF00330 Aconitase family (aconitate hydratase) L2M54_00395 PF00694 Aconitase C-terminal domain L2M54_00425 PF13276 HTH-like domain L2M54_00425 PF00665 Integrase core domain L2M54_00425 PF13333 Integrase core domain L2M54_00435 PF13296 Putative type VI secretion system Rhs element Vgr L2M54_00435 PF04717 Type VI secretion system, phage-baseplate injector L2M54_00435 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) L2M54_00505 PF07715 TonB-dependent Receptor Plug Domain L2M54_00505 PF00593 TonB dependent receptor L2M54_00515 PF01037 Lrp/AsnC ligand binding domain L2M54_00520 PF01266 FAD dependent oxidoreductase L2M54_00525 PF01168 Alanine racemase, N-terminal domain L2M54_00525 PF00842 Alanine racemase, C-terminal domain L2M54_00530 PF01042 Endoribonuclease L-PSP L2M54_00535 PF00324 Amino acid permease L2M54_00540 PF00324 Amino acid permease L2M54_00550 PF00171 Aldehyde dehydrogenase family L2M54_00555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase L2M54_00555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase L2M54_00560 PF00501 AMP-binding enzyme L2M54_00560 PF13193 AMP-binding enzyme C-terminal domain L2M54_00565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_00565 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_00565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_00570 PF00378 Enoyl-CoA hydratase/isomerase L2M54_00575 PF00378 Enoyl-CoA hydratase/isomerase L2M54_00580 PF07690 Major Facilitator Superfamily L2M54_00580 PF00083 Sugar (and other) transporter L2M54_00585 PF00765 Autoinducer synthase L2M54_00595 PF03472 Autoinducer binding domain L2M54_00595 PF00196 Bacterial regulatory proteins, luxR family L2M54_00600 PF00501 AMP-binding enzyme L2M54_00605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_00605 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_00605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_00610 PF02801 Beta-ketoacyl synthase, C-terminal domain L2M54_00610 PF14765 Polyketide synthase dehydratase L2M54_00610 PF08242 Methyltransferase domain L2M54_00610 PF00550 Phosphopantetheine attachment site L2M54_00610 PF16197 Ketoacyl-synthetase C-terminal extension L2M54_00610 PF00109 Beta-ketoacyl synthase, N-terminal domain L2M54_00610 PF00975 Thioesterase domain L2M54_00615 PF00501 AMP-binding enzyme L2M54_00615 PF00550 Phosphopantetheine attachment site L2M54_00615 PF00668 Condensation domain L2M54_00615 PF13193 AMP-binding enzyme C-terminal domain L2M54_00615 PF00975 Thioesterase domain L2M54_00630 PF16363 GDP-mannose 4,6 dehydratase L2M54_00635 PF01648 4'-phosphopantetheinyl transferase superfamily L2M54_00650 PF01722 BolA-like protein L2M54_00660 PF13614 AAA domain L2M54_00675 PF09335 SNARE associated Golgi protein L2M54_00680 PF07681 DoxX L2M54_00685 PF04286 Protein of unknown function (DUF445) L2M54_00690 PF00958 GMP synthase C terminal domain L2M54_00690 PF00117 Glutamine amidotransferase class-I L2M54_00690 PF02540 NAD synthase L2M54_00695 PF01909 Nucleotidyltransferase domain L2M54_00695 PF13427 Domain of unknown function (DUF4111) L2M54_00700 PF03551 Transcriptional regulator PadR-like family L2M54_00710 PF02678 Pirin L2M54_00710 PF05726 Pirin C-terminal cupin domain L2M54_00730 PF00750 tRNA synthetases class I (R) L2M54_00730 PF03485 Arginyl tRNA synthetase N terminal domain L2M54_00730 PF05746 DALR anticodon binding domain L2M54_00735 PF00390 Malic enzyme, N-terminal domain L2M54_00735 PF03949 Malic enzyme, NAD binding domain L2M54_00740 PF04261 Dyp-type peroxidase family L2M54_00745 PF01810 LysE type translocator L2M54_00750 PF00950 ABC 3 transport family L2M54_00755 PF00005 ABC transporter L2M54_00775 PF00119 ATP synthase A chain L2M54_00780 PF00137 ATP synthase subunit C L2M54_00785 PF00430 ATP synthase B/B' CF(0) L2M54_00790 PF00213 ATP synthase delta (OSCP) subunit L2M54_00795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L2M54_00795 PF00306 ATP synthase alpha/beta chain, C terminal domain L2M54_00795 PF02874 ATP synthase alpha/beta family, beta-barrel domain L2M54_00800 PF00231 ATP synthase L2M54_00805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L2M54_00805 PF02874 ATP synthase alpha/beta family, beta-barrel domain L2M54_00810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain L2M54_00820 PF00255 Glutathione peroxidase L2M54_00830 PF07690 Major Facilitator Superfamily L2M54_00835 PF00440 Bacterial regulatory proteins, tetR family L2M54_00840 PF00892 EamA-like transporter family L2M54_00845 PF01300 Telomere recombination L2M54_00850 PF02481 DNA recombination-mediator protein A L2M54_00850 PF17782 DprA winged helix domain L2M54_00860 PF01327 Polypeptide deformylase L2M54_00920 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_00930 PF03358 NADPH-dependent FMN reductase L2M54_00950 PF11842 Domain of unknown function (DUF3362) L2M54_00950 PF04055 Radical SAM superfamily L2M54_00950 PF08497 Radical SAM N-terminal L2M54_00970 PF00817 impB/mucB/samB family L2M54_00970 PF11799 impB/mucB/samB family C-terminal domain L2M54_00970 PF11798 IMS family HHH motif L2M54_00985 PF03641 Possible lysine decarboxylase L2M54_00990 PF03741 Integral membrane protein TerC family L2M54_00990 PF03471 Transporter associated domain L2M54_00995 PF02810 SEC-C motif L2M54_01000 PF03458 UPF0126 domain L2M54_01005 PF07690 Major Facilitator Superfamily L2M54_01010 PF03989 DNA gyrase C-terminal domain, beta-propeller L2M54_01010 PF00521 DNA gyrase/topoisomerase IV, subunit A L2M54_01015 PF00501 AMP-binding enzyme L2M54_01015 PF13193 AMP-binding enzyme C-terminal domain L2M54_01030 PF00719 Inorganic pyrophosphatase L2M54_01035 PF03573 outer membrane porin, OprD family L2M54_01050 PF00701 Dihydrodipicolinate synthetase family L2M54_01065 PF01078 Magnesium chelatase, subunit ChlI L2M54_01065 PF13335 Magnesium chelatase, subunit ChlI C-terminal L2M54_01075 PF00543 Nitrogen regulatory protein P-II L2M54_01080 PF00909 Ammonium Transporter Family L2M54_01085 PF03477 ATP cone domain L2M54_01090 PF01872 RibD C-terminal domain L2M54_01090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region L2M54_01100 PF00677 Lumazine binding domain L2M54_01120 PF00883 Cytosol aminopeptidase family, catalytic domain L2M54_01120 PF02789 Cytosol aminopeptidase family, N-terminal domain L2M54_01130 PF03739 Lipopolysaccharide export system permease LptF/LptG L2M54_01135 PF06415 BPG-independent PGAM N-terminus (iPGM_N) L2M54_01135 PF01676 Metalloenzyme superfamily L2M54_01145 PF02954 Bacterial regulatory protein, Fis family L2M54_01145 PF00072 Response regulator receiver domain L2M54_01145 PF00158 Sigma-54 interaction domain L2M54_01150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_01150 PF00512 His Kinase A (phospho-acceptor) domain L2M54_01155 PF00072 Response regulator receiver domain L2M54_01155 PF00196 Bacterial regulatory proteins, luxR family L2M54_01160 PF00768 D-alanyl-D-alanine carboxypeptidase L2M54_01165 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_01170 PF01842 ACT domain L2M54_01170 PF00742 Homoserine dehydrogenase L2M54_01170 PF03447 Homoserine dehydrogenase, NAD binding domain L2M54_01175 PF10411 Disulfide bond isomerase protein N-terminus L2M54_01175 PF13098 Thioredoxin-like domain L2M54_01180 PF02899 Phage integrase, N-terminal SAM-like domain L2M54_01180 PF00589 Phage integrase family L2M54_01190 PF07664 Ferrous iron transport protein B C terminus L2M54_01190 PF02421 Ferrous iron transport protein B L2M54_01190 PF07670 Nucleoside recognition L2M54_01200 PF08245 Mur ligase middle domain L2M54_01200 PF02875 Mur ligase family, glutamate ligase domain L2M54_01205 PF01098 Cell cycle protein L2M54_01210 PF00749 tRNA synthetases class I (E and Q), catalytic domain L2M54_01215 PF01258 Prokaryotic dksA/traR C4-type zinc finger L2M54_01220 PF00149 Calcineurin-like phosphoesterase L2M54_01225 PF00293 NUDIX domain L2M54_01230 PF13667 ThiC-associated domain L2M54_01230 PF01964 Radical SAM ThiC family L2M54_01245 PF00892 EamA-like transporter family L2M54_01250 PF02321 Outer membrane efflux protein L2M54_01255 PF01895 PhoU domain L2M54_01260 PF04362 Bacterial Fe(2+) trafficking L2M54_01265 PF14698 Argininosuccinate lyase C-terminal L2M54_01265 PF00206 Lyase L2M54_01270 PF06580 Histidine kinase L2M54_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_01270 PF07694 5TMR of 5TMR-LYT L2M54_01275 PF04397 LytTr DNA-binding domain L2M54_01275 PF00072 Response regulator receiver domain L2M54_01280 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain L2M54_01280 PF03900 Porphobilinogen deaminase, C-terminal domain L2M54_01305 PF00816 H-NS histone family L2M54_01320 PF00263 Bacterial type II and III secretion system protein L2M54_01320 PF03958 Bacterial type II/III secretion system short domain L2M54_01325 PF12401 Protein of unknown function (DUF2662) L2M54_01325 PF00498 FHA domain L2M54_01330 PF13419 Haloacid dehalogenase-like hydrolase L2M54_01335 PF00425 chorismate binding enzyme L2M54_01335 PF04715 Anthranilate synthase component I, N terminal region L2M54_01360 PF00009 Elongation factor Tu GTP binding domain L2M54_01360 PF03143 Elongation factor Tu C-terminal domain L2M54_01360 PF03144 Elongation factor Tu domain 2 L2M54_01370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex L2M54_01375 PF02357 Transcription termination factor nusG L2M54_01375 PF00467 KOW motif L2M54_01380 PF00298 Ribosomal protein L11, RNA binding domain L2M54_01380 PF03946 Ribosomal protein L11, N-terminal domain L2M54_01385 PF00687 Ribosomal protein L1p/L10e family L2M54_01390 PF00466 Ribosomal protein L10 L2M54_01395 PF00542 Ribosomal protein L7/L12 C-terminal domain L2M54_01395 PF16320 Ribosomal protein L7/L12 dimerisation domain L2M54_01400 PF10385 RNA polymerase beta subunit external 1 domain L2M54_01400 PF00562 RNA polymerase Rpb2, domain 6 L2M54_01400 PF04560 RNA polymerase Rpb2, domain 7 L2M54_01400 PF04563 RNA polymerase beta subunit L2M54_01400 PF04561 RNA polymerase Rpb2, domain 2 L2M54_01400 PF04565 RNA polymerase Rpb2, domain 3 L2M54_01405 PF04998 RNA polymerase Rpb1, domain 5 L2M54_01405 PF04983 RNA polymerase Rpb1, domain 3 L2M54_01405 PF00623 RNA polymerase Rpb1, domain 2 L2M54_01405 PF04997 RNA polymerase Rpb1, domain 1 L2M54_01405 PF05000 RNA polymerase Rpb1, domain 4 L2M54_01425 PF00561 alpha/beta hydrolase fold L2M54_01430 PF03553 Na+/H+ antiporter family L2M54_01430 PF13726 Na+-H+ antiporter family L2M54_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_01445 PF00183 Hsp90 protein L2M54_01460 PF01323 DSBA-like thioredoxin domain L2M54_01470 PF00376 MerR family regulatory protein L2M54_01470 PF09278 MerR, DNA binding L2M54_01490 PF00108 Thiolase, N-terminal domain L2M54_01490 PF02803 Thiolase, C-terminal domain L2M54_01495 PF00378 Enoyl-CoA hydratase/isomerase L2M54_01495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain L2M54_01495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L2M54_01520 PF08459 UvrC Helix-hairpin-helix N-terminal L2M54_01520 PF02151 UvrB/uvrC motif L2M54_01520 PF01541 GIY-YIG catalytic domain L2M54_01530 PF01066 CDP-alcohol phosphatidyltransferase L2M54_01560 PF13533 Biotin-lipoyl like L2M54_01565 PF03652 Holliday junction resolvase L2M54_01570 PF02622 Uncharacterized ACR, COG1678 L2M54_01575 PF02463 RecF/RecN/SMC N terminal domain L2M54_01585 PF06865 Pyrimidine/purine nucleoside phosphorylase L2M54_01590 PF08032 RNA 2'-O ribose methyltransferase substrate binding L2M54_01590 PF00588 SpoU rRNA Methylase family L2M54_01600 PF01121 Dephospho-CoA kinase L2M54_01605 PF01478 Type IV leader peptidase family L2M54_01605 PF06750 Bacterial Peptidase A24 N-terminal domain L2M54_01615 PF00482 Type II secretion system (T2SS), protein F L2M54_01620 PF00437 Type II/IV secretion system protein L2M54_01620 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain L2M54_01625 PF00121 Triosephosphate isomerase L2M54_01630 PF03840 Preprotein translocase SecG subunit L2M54_01650 PF02576 RimP N-terminal domain L2M54_01650 PF17384 RimP C-terminal SH3 domain L2M54_01655 PF08529 NusA N-terminal domain L2M54_01655 PF00575 S1 RNA binding domain L2M54_01655 PF13184 NusA-like KH domain L2M54_01660 PF04760 Translation initiation factor IF-2, N-terminal region L2M54_01660 PF00009 Elongation factor Tu GTP binding domain L2M54_01660 PF08364 Bacterial translation initiation factor IF-2 associated region L2M54_01660 PF11987 Translation-initiation factor 2 L2M54_01665 PF02033 Ribosome-binding factor A L2M54_01670 PF03334 Na+/H+ antiporter subunit L2M54_01675 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) L2M54_01680 PF01899 Na+/H+ ion antiporter subunit L2M54_01685 PF00361 Proton-conducting membrane transporter L2M54_01690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L2M54_01695 PF13244 Domain of unknown function (DUF4040) L2M54_01695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L2M54_01695 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter L2M54_01695 PF00361 Proton-conducting membrane transporter L2M54_01710 PF01502 Phosphoribosyl-AMP cyclohydrolase L2M54_01720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L2M54_01725 PF01494 FAD binding domain L2M54_01730 PF03109 ABC1 family L2M54_01740 PF01209 ubiE/COQ5 methyltransferase family L2M54_01750 PF03976 Polyphosphate kinase 2 (PPK2) L2M54_01760 PF17946 RecC C-terminal domain L2M54_01765 PF12705 PD-(D/E)XK nuclease superfamily L2M54_01765 PF00580 UvrD/REP helicase N-terminal domain L2M54_01765 PF13361 UvrD-like helicase C-terminal domain L2M54_01770 PF13538 UvrD-like helicase C-terminal domain L2M54_01775 PF00144 Beta-lactamase L2M54_01780 PF00312 Ribosomal protein S15 L2M54_01785 PF00013 KH domain L2M54_01785 PF03725 3' exoribonuclease family, domain 2 L2M54_01785 PF01138 3' exoribonuclease family, domain 1 L2M54_01785 PF00575 S1 RNA binding domain L2M54_01785 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain L2M54_01790 PF01544 CorA-like Mg2+ transporter protein L2M54_01800 PF00226 DnaJ domain L2M54_01800 PF01556 DnaJ C terminal domain L2M54_01810 PF01430 Hsp33 protein L2M54_01815 PF00999 Sodium/hydrogen exchanger family L2M54_01815 PF02254 TrkA-N domain L2M54_01820 PF18319 PriA DNA helicase Cys-rich region (CRR) domain L2M54_01820 PF00270 DEAD/DEAH box helicase L2M54_01820 PF18074 Primosomal protein N C-terminal domain L2M54_01820 PF17764 3′ DNA-binding domain (3′BD) L2M54_01820 PF00271 Helicase conserved C-terminal domain L2M54_01825 PF00482 Type II secretion system (T2SS), protein F L2M54_01830 PF07963 Prokaryotic N-terminal methylation motif L2M54_01830 PF08334 Type II secretion system (T2SS), protein G L2M54_01845 PF00795 Carbon-nitrogen hydrolase L2M54_01850 PF00571 CBS domain L2M54_01850 PF03471 Transporter associated domain L2M54_01855 PF01206 Sulfurtransferase TusA L2M54_01875 PF01177 Asp/Glu/Hydantoin racemase L2M54_01885 PF00762 Ferrochelatase L2M54_01890 PF00753 Metallo-beta-lactamase superfamily L2M54_01895 PF03884 DNA gyrase inhibitor YacG L2M54_01905 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_01905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster L2M54_01905 PF13247 4Fe-4S dicluster domain L2M54_01915 PF02537 CrcB-like protein, Camphor Resistance (CrcB) L2M54_01925 PF01197 Ribosomal protein L31 L2M54_01930 PF03109 ABC1 family L2M54_01935 PF08028 Acyl-CoA dehydrogenase, C-terminal domain L2M54_01935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_01940 PF08028 Acyl-CoA dehydrogenase, C-terminal domain L2M54_01940 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_01940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_01945 PF01554 MatE L2M54_01955 PF04055 Radical SAM superfamily L2M54_01955 PF06969 HemN C-terminal domain L2M54_01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_01965 PF03466 LysR substrate binding domain L2M54_01980 PF00501 AMP-binding enzyme L2M54_01980 PF13193 AMP-binding enzyme C-terminal domain L2M54_01985 PF10150 Ribonuclease E/G family L2M54_01985 PF00575 S1 RNA binding domain L2M54_01985 PF12111 Polyribonucleotide phosphorylase C terminal L2M54_01990 PF00849 RNA pseudouridylate synthase L2M54_01990 PF01479 S4 domain L2M54_01995 PF13419 Haloacid dehalogenase-like hydrolase L2M54_02000 PF13280 WYL domain L2M54_02000 PF08279 HTH domain L2M54_02005 PF02798 Glutathione S-transferase, N-terminal domain L2M54_02015 PF03466 LysR substrate binding domain L2M54_02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_02020 PF12706 Beta-lactamase superfamily domain L2M54_02025 PF00141 Peroxidase L2M54_02030 PF01590 GAF domain L2M54_02030 PF05524 PEP-utilising enzyme, N-terminal L2M54_02030 PF00391 PEP-utilising enzyme, mobile domain L2M54_02030 PF02896 PEP-utilising enzyme, TIM barrel domain L2M54_02035 PF00293 NUDIX domain L2M54_02055 PF03466 LysR substrate binding domain L2M54_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_02065 PF00330 Aconitase family (aconitate hydratase) L2M54_02070 PF00694 Aconitase C-terminal domain L2M54_02080 PF00180 Isocitrate/isopropylmalate dehydrogenase L2M54_02095 PF01176 Translation initiation factor 1A / IF-1 L2M54_02105 PF01416 tRNA pseudouridine synthase L2M54_02125 PF01118 Semialdehyde dehydrogenase, NAD binding domain L2M54_02125 PF02774 Semialdehyde dehydrogenase, dimerisation domain L2M54_02135 PF00375 Sodium:dicarboxylate symporter family L2M54_02145 PF03279 Bacterial lipid A biosynthesis acyltransferase L2M54_02150 PF01810 LysE type translocator L2M54_02160 PF16326 ABC transporter C-terminal domain L2M54_02160 PF12848 ABC transporter L2M54_02160 PF00005 ABC transporter L2M54_02165 PF04102 SlyX L2M54_02170 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_02170 PF00107 Zinc-binding dehydrogenase L2M54_02175 PF01638 HxlR-like helix-turn-helix L2M54_02185 PF01396 Topoisomerase DNA binding C4 zinc finger L2M54_02185 PF01751 Toprim domain L2M54_02185 PF01131 DNA topoisomerase L2M54_02185 PF08272 Topoisomerase I zinc-ribbon-like L2M54_02200 PF00580 UvrD/REP helicase N-terminal domain L2M54_02200 PF13361 UvrD-like helicase C-terminal domain L2M54_02205 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) L2M54_02225 PF00999 Sodium/hydrogen exchanger family L2M54_02225 PF02254 TrkA-N domain L2M54_02230 PF00471 Ribosomal protein L33 L2M54_02235 PF00830 Ribosomal L28 family L2M54_02240 PF00171 Aldehyde dehydrogenase family L2M54_02250 PF01842 ACT domain L2M54_02250 PF00551 Formyl transferase L2M54_02260 PF01618 MotA/TolQ/ExbB proton channel family L2M54_02270 PF01625 Peptide methionine sulfoxide reductase L2M54_02280 PF00186 Dihydrofolate reductase L2M54_02285 PF00303 Thymidylate synthase L2M54_02300 PF01790 Prolipoprotein diacylglyceryl transferase L2M54_02320 PF00902 Sec-independent protein translocase protein (TatC) L2M54_02325 PF02416 mttA/Hcf106 family L2M54_02330 PF02416 mttA/Hcf106 family L2M54_02340 PF01725 Ham1 family L2M54_02350 PF00561 alpha/beta hydrolase fold L2M54_02350 PF07021 Methionine biosynthesis protein MetW L2M54_02355 PF00561 alpha/beta hydrolase fold L2M54_02360 PF00682 HMGL-like L2M54_02360 PF08502 LeuA allosteric (dimerisation) domain L2M54_02365 PF13640 2OG-Fe(II) oxygenase superfamily L2M54_02365 PF18331 PKHD-type hydroxylase C-terminal domain L2M54_02375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2M54_02375 PF05698 Bacterial trigger factor protein (TF) C-terminus L2M54_02375 PF05697 Bacterial trigger factor protein (TF) L2M54_02380 PF00574 Clp protease L2M54_02385 PF06689 ClpX C4-type zinc finger L2M54_02385 PF10431 C-terminal, D2-small domain, of ClpB protein L2M54_02385 PF07724 AAA domain (Cdc48 subfamily) L2M54_02400 PF05683 Fumarase C-terminus L2M54_02400 PF05681 Fumarate hydratase (Fumerase) L2M54_02405 PF01515 Phosphate acetyl/butaryl transferase L2M54_02405 PF07085 DRTGG domain L2M54_02410 PF00871 Acetokinase family L2M54_02415 PF00920 Dehydratase family L2M54_02420 PF01081 KDPG and KHG aldolase L2M54_02425 PF02447 GntP family permease L2M54_02430 PF01202 Shikimate kinase L2M54_02435 PF00171 Aldehyde dehydrogenase family L2M54_02440 PF00171 Aldehyde dehydrogenase family L2M54_02445 PF00561 alpha/beta hydrolase fold L2M54_02455 PF00933 Glycosyl hydrolase family 3 N terminal domain L2M54_02460 PF11818 C-terminal domain of tail specific protease (DUF3340) L2M54_02460 PF00595 PDZ domain L2M54_02460 PF17804 Tail specific protease N-terminal domain L2M54_02460 PF03572 Peptidase family S41 L2M54_02465 PF13439 Glycosyltransferase Family 4 L2M54_02465 PF00534 Glycosyl transferases group 1 L2M54_02470 PF01569 PAP2 superfamily L2M54_02475 PF04384 Iron-sulphur cluster assembly L2M54_02480 PF00334 Nucleoside diphosphate kinase L2M54_02485 PF04055 Radical SAM superfamily L2M54_02495 PF13464 Domain of unknown function (DUF4115) L2M54_02500 PF04551 GcpE protein L2M54_02505 PF13393 Histidyl-tRNA synthetase L2M54_02505 PF03129 Anticodon binding domain L2M54_02515 PF01011 PQQ enzyme repeat L2M54_02515 PF13360 PQQ-like domain L2M54_02520 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal L2M54_02520 PF01926 50S ribosome-binding GTPase L2M54_02530 PF02556 Preprotein translocase subunit SecB L2M54_02535 PF00462 Glutaredoxin L2M54_02545 PF03193 RsgA GTPase L2M54_02550 PF00929 Exonuclease L2M54_02565 PF02321 Outer membrane efflux protein L2M54_02570 PF00005 ABC transporter L2M54_02570 PF02687 FtsX-like permease family L2M54_02570 PF12704 MacB-like periplasmic core domain L2M54_02590 PF09334 tRNA synthetases class I (M) L2M54_02590 PF13603 Leucyl-tRNA synthetase, Domain 2 L2M54_02590 PF08264 Anticodon-binding domain of tRNA L2M54_02590 PF00133 tRNA synthetases class I (I, L, M and V) L2M54_02600 PF00205 Thiamine pyrophosphate enzyme, central domain L2M54_02600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L2M54_02600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L2M54_02605 PF10369 Small subunit of acetolactate synthase L2M54_02610 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain L2M54_02610 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain L2M54_02615 PF00563 EAL domain L2M54_02615 PF00990 Diguanylate cyclase, GGDEF domain L2M54_02615 PF03707 Bacterial signalling protein N terminal repeat L2M54_02760 PF07693 KAP family P-loop domain L2M54_02775 PF01026 TatD related DNase L2M54_02780 PF13737 Transposase DDE domain L2M54_02790 PF03144 Elongation factor Tu domain 2 L2M54_02790 PF16658 Class II release factor RF3, C-terminal domain L2M54_02790 PF00009 Elongation factor Tu GTP binding domain L2M54_02805 PF01026 TatD related DNase L2M54_02810 PF00330 Aconitase family (aconitate hydratase) L2M54_02810 PF00694 Aconitase C-terminal domain L2M54_02820 PF00899 ThiF family L2M54_02830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_02830 PF03466 LysR substrate binding domain L2M54_02840 PF01207 Dihydrouridine synthase (Dus) L2M54_02855 PF15608 PELOTA RNA binding domain L2M54_02855 PF11202 Phosphoribosyl transferase (PRTase) L2M54_02865 PF02342 TerD domain L2M54_02870 PF02342 TerD domain L2M54_02880 PF02342 TerD domain L2M54_02895 PF02342 TerD domain L2M54_02900 PF07690 Major Facilitator Superfamily L2M54_02910 PF00892 EamA-like transporter family L2M54_02915 PF01262 Alanine dehydrogenase/PNT, C-terminal domain L2M54_02915 PF05222 Alanine dehydrogenase/PNT, N-terminal domain L2M54_02920 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch L2M54_02925 PF02233 NAD(P) transhydrogenase beta subunit L2M54_02930 PF00106 short chain dehydrogenase L2M54_02940 PF01261 Xylose isomerase-like TIM barrel L2M54_02945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase L2M54_02945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase L2M54_02950 PF00378 Enoyl-CoA hydratase/isomerase L2M54_02955 PF00512 His Kinase A (phospho-acceptor) domain L2M54_02955 PF01627 Hpt domain L2M54_02955 PF00072 Response regulator receiver domain L2M54_02955 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) L2M54_02955 PF00672 HAMP domain L2M54_02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_02960 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_02970 PF05958 tRNA (Uracil-5-)-methyltransferase L2M54_02975 PF02824 TGS domain L2M54_02975 PF04607 Region found in RelA / SpoT proteins L2M54_02975 PF13291 ACT domain L2M54_02985 PF03819 MazG nucleotide pyrophosphohydrolase domain L2M54_02995 PF12627 Probable RNA and SrmB- binding site of polymerase A L2M54_02995 PF01743 Poly A polymerase head domain L2M54_02995 PF12626 Polymerase A arginine-rich C-terminus L2M54_03005 PF02548 Ketopantoate hydroxymethyltransferase L2M54_03010 PF02569 Pantoate-beta-alanine ligase L2M54_03015 PF03668 P-loop ATPase protein family L2M54_03020 PF00381 PTS HPr component phosphorylation site L2M54_03025 PF04751 Protein of unknown function (DUF615) L2M54_03030 PF00501 AMP-binding enzyme L2M54_03030 PF13193 AMP-binding enzyme C-terminal domain L2M54_03035 PF03129 Anticodon binding domain L2M54_03035 PF02824 TGS domain L2M54_03035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L2M54_03035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L2M54_03040 PF05198 Translation initiation factor IF-3, N-terminal domain L2M54_03040 PF00707 Translation initiation factor IF-3, C-terminal domain L2M54_03045 PF00043 Glutathione S-transferase, C-terminal domain L2M54_03045 PF02798 Glutathione S-transferase, N-terminal domain L2M54_03050 PF09335 SNARE associated Golgi protein L2M54_03055 PF07690 Major Facilitator Superfamily L2M54_03065 PF01632 Ribosomal protein L35 L2M54_03070 PF00453 Ribosomal protein L20 L2M54_03090 PF01409 tRNA synthetases class II core domain (F) L2M54_03090 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain L2M54_03095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain L2M54_03095 PF03147 Ferredoxin-fold anticodon binding domain L2M54_03095 PF01588 Putative tRNA binding domain L2M54_03095 PF03483 B3/4 domain L2M54_03095 PF03484 tRNA synthetase B5 domain L2M54_03100 PF00216 Bacterial DNA-binding protein L2M54_03115 PF07497 Rho termination factor, RNA-binding domain L2M54_03115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain L2M54_03115 PF07498 Rho termination factor, N-terminal domain L2M54_03120 PF00085 Thioredoxin L2M54_03125 PF02541 Ppx/GppA phosphatase family L2M54_03130 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit L2M54_03135 PF11734 TilS substrate C-terminal domain L2M54_03135 PF01171 PP-loop family L2M54_03135 PF09179 TilS substrate binding domain L2M54_03140 PF03807 NADP oxidoreductase coenzyme F420-dependent L2M54_03140 PF14748 Pyrroline-5-carboxylate reductase dimerisation L2M54_03145 PF02325 YGGT family L2M54_03150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain L2M54_03150 PF00476 DNA polymerase family A L2M54_03150 PF01612 3'-5' exonuclease L2M54_03150 PF01367 5'-3' exonuclease, C-terminal SAM fold L2M54_03170 PF00437 Type II/IV secretion system protein L2M54_03175 PF02566 OsmC-like protein L2M54_03180 PF01047 MarR family L2M54_03190 PF00795 Carbon-nitrogen hydrolase L2M54_03235 PF04552 Sigma-54, DNA binding domain L2M54_03235 PF00309 Sigma-54 factor, Activator interacting domain (AID) L2M54_03235 PF04963 Sigma-54 factor, core binding domain L2M54_03240 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein L2M54_03245 PF01722 BolA-like protein L2M54_03250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L2M54_03255 PF01634 ATP phosphoribosyltransferase L2M54_03260 PF00815 Histidinol dehydrogenase L2M54_03265 PF00155 Aminotransferase class I and II L2M54_03270 PF04715 Anthranilate synthase component I, N terminal region L2M54_03270 PF00425 chorismate binding enzyme L2M54_03310 PF00293 NUDIX domain L2M54_03315 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_03320 PF00814 Glycoprotease family L2M54_03325 PF04445 Putative SAM-dependent methyltransferase L2M54_03335 PF00756 Putative esterase L2M54_03345 PF00834 Ribulose-phosphate 3 epimerase family L2M54_03360 PF07731 Multicopper oxidase L2M54_03360 PF07732 Multicopper oxidase L2M54_03360 PF00394 Multicopper oxidase L2M54_03365 PF05275 Copper resistance protein B precursor (CopB) L2M54_03375 PF00893 Small Multidrug Resistance protein L2M54_03380 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain L2M54_03380 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain L2M54_03385 PF01960 ArgJ family L2M54_03390 PF02445 Quinolinate synthetase A protein L2M54_03415 PF00962 Adenosine/AMP deaminase L2M54_03420 PF00107 Zinc-binding dehydrogenase L2M54_03420 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_03425 PF03466 LysR substrate binding domain L2M54_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_03430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_03430 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_03430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_03435 PF07690 Major Facilitator Superfamily L2M54_03440 PF02515 CoA-transferase family III L2M54_03445 PF17932 Tetracyclin repressor-like, C-terminal domain L2M54_03445 PF00440 Bacterial regulatory proteins, tetR family L2M54_03460 PF14537 Cytochrome c3 L2M54_03460 PF00890 FAD binding domain L2M54_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_03465 PF03466 LysR substrate binding domain L2M54_03475 PF07690 Major Facilitator Superfamily L2M54_03480 PF03466 LysR substrate binding domain L2M54_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_03490 PF07687 Peptidase dimerisation domain L2M54_03490 PF01546 Peptidase family M20/M25/M40 L2M54_03495 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term L2M54_03495 PF12833 Helix-turn-helix domain L2M54_03505 PF01810 LysE type translocator L2M54_03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_03510 PF03466 LysR substrate binding domain L2M54_03520 PF08267 Cobalamin-independent synthase, N-terminal domain L2M54_03520 PF01717 Cobalamin-independent synthase, Catalytic domain L2M54_03525 PF01613 Flavin reductase like domain L2M54_03555 PF17074 Darcynin, domain of unknown function L2M54_03585 PF02567 Phenazine biosynthesis-like protein L2M54_03600 PF00268 Ribonucleotide reductase, small chain L2M54_03610 PF00317 Ribonucleotide reductase, all-alpha domain L2M54_03610 PF02867 Ribonucleotide reductase, barrel domain L2M54_03610 PF03477 ATP cone domain L2M54_03620 PF00072 Response regulator receiver domain L2M54_03620 PF00486 Transcriptional regulatory protein, C terminal L2M54_03625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_03625 PF00672 HAMP domain L2M54_03625 PF00512 His Kinase A (phospho-acceptor) domain L2M54_03635 PF17151 Periplasmic sensor domain L2M54_03635 PF00990 Diguanylate cyclase, GGDEF domain L2M54_03645 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit L2M54_03650 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit L2M54_03650 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit L2M54_03660 PF10531 SLBB domain L2M54_03660 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region L2M54_03660 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit L2M54_03665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L2M54_03665 PF00384 Molybdopterin oxidoreductase L2M54_03665 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region L2M54_03670 PF00146 NADH dehydrogenase L2M54_03675 PF12838 4Fe-4S dicluster domain L2M54_03680 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 L2M54_03685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L L2M54_03690 PF00361 Proton-conducting membrane transporter L2M54_03690 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus L2M54_03695 PF00361 Proton-conducting membrane transporter L2M54_03700 PF00361 Proton-conducting membrane transporter L2M54_03710 PF00313 'Cold-shock' DNA-binding domain L2M54_03715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_03715 PF03466 LysR substrate binding domain L2M54_03720 PF00175 Oxidoreductase NAD-binding domain L2M54_03720 PF00970 Oxidoreductase FAD-binding domain L2M54_03735 PF05552 Conserved TM helix L2M54_03750 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_03780 PF01588 Putative tRNA binding domain L2M54_03780 PF09334 tRNA synthetases class I (M) L2M54_03790 PF10609 NUBPL iron-transfer P-loop NTPase L2M54_03795 PF01048 Phosphorylase superfamily L2M54_03810 PF00692 dUTPase L2M54_03840 PF01207 Dihydrouridine synthase (Dus) L2M54_03850 PF00448 SRP54-type protein, GTPase domain L2M54_03850 PF02881 SRP54-type protein, helical bundle domain L2M54_03850 PF02978 Signal peptide binding domain L2M54_03855 PF03309 Type III pantothenate kinase L2M54_03865 PF01925 Sulfite exporter TauE/SafE L2M54_03875 PF02463 RecF/RecN/SMC N terminal domain L2M54_03875 PF06470 SMC proteins Flexible Hinge Domain L2M54_03885 PF12826 Helix-hairpin-helix motif L2M54_03885 PF03120 NAD-dependent DNA ligase OB-fold domain L2M54_03885 PF01653 NAD-dependent DNA ligase adenylation domain L2M54_03885 PF03119 NAD-dependent DNA ligase C4 zinc finger domain L2M54_03885 PF00533 BRCA1 C Terminus (BRCT) domain L2M54_03890 PF00210 Ferritin-like domain L2M54_03895 PF07690 Major Facilitator Superfamily L2M54_03900 PF00982 Glycosyltransferase family 20 L2M54_03905 PF02358 Trehalose-phosphatase L2M54_03910 PF08241 Methyltransferase domain L2M54_03910 PF12697 Alpha/beta hydrolase family L2M54_03915 PF00202 Aminotransferase class-III L2M54_03915 PF06968 Biotin and Thiamin Synthesis associated domain L2M54_03915 PF04055 Radical SAM superfamily L2M54_03920 PF00155 Aminotransferase class I and II L2M54_03935 PF01479 S4 domain L2M54_03935 PF00849 RNA pseudouridylate synthase L2M54_03940 PF04079 Segregation and condensation complex subunit ScpB L2M54_03945 PF02616 Segregation and condensation protein ScpA L2M54_03950 PF01300 Telomere recombination L2M54_03955 PF04315 Elongation factor P hydroxylase L2M54_03960 PF02620 Large ribosomal RNA subunit accumulation protein YceD L2M54_03965 PF01783 Ribosomal L32p protein family L2M54_03970 PF00698 Acyl transferase domain L2M54_03980 PF00550 Phosphopantetheine attachment site L2M54_03985 PF04972 BON domain L2M54_03985 PF01476 LysM domain L2M54_03990 PF08543 Phosphomethylpyrimidine kinase L2M54_03990 PF02581 Thiamine monophosphate synthase L2M54_03990 PF03070 TENA/THI-4/PQQC family L2M54_04000 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L2M54_04015 PF02261 Aspartate decarboxylase L2M54_04020 PF01195 Peptidyl-tRNA hydrolase L2M54_04025 PF01386 Ribosomal L25p family L2M54_04030 PF14572 Phosphoribosyl synthetase-associated domain L2M54_04030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase L2M54_04055 PF08544 GHMP kinases C terminal L2M54_04055 PF00288 GHMP kinases N terminal domain L2M54_04060 PF03550 Outer membrane lipoprotein LolB L2M54_04070 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain L2M54_04070 PF01488 Shikimate / quinate 5-dehydrogenase L2M54_04070 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain L2M54_04075 PF08275 DNA primase catalytic core, N-terminal domain L2M54_04075 PF08278 DNA primase DnaG DnaB-binding L2M54_04075 PF10410 DnaB-helicase binding domain of primase L2M54_04075 PF01807 CHC2 zinc finger L2M54_04080 PF13525 Outer membrane lipoprotein L2M54_04085 PF01479 S4 domain L2M54_04085 PF00849 RNA pseudouridylate synthase L2M54_04090 PF02578 Multi-copper polyphenol oxidoreductase laccase L2M54_04095 PF03358 NADPH-dependent FMN reductase L2M54_04100 PF01668 SmpB protein L2M54_04145 PF12684 PDDEXK-like domain of unknown function (DUF3799) L2M54_04145 PF06630 Enterobacterial exodeoxyribonuclease VIII L2M54_04200 PF03796 DnaB-like helicase C terminal domain L2M54_04200 PF00772 DnaB-like helicase N terminal domain L2M54_04355 PF12949 HeH/LEM domain L2M54_04355 PF17891 Mu-like prophage FluMu N-terminal domain L2M54_04495 PF13356 Arm DNA-binding domain L2M54_04495 PF00589 Phage integrase family L2M54_04500 PF01467 Cytidylyltransferase-like L2M54_04505 PF00037 4Fe-4S binding domain L2M54_04525 PF03466 LysR substrate binding domain L2M54_04525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_04530 PF00180 Isocitrate/isopropylmalate dehydrogenase L2M54_04535 PF02028 BCCT, betaine/carnitine/choline family transporter L2M54_04540 PF07859 alpha/beta hydrolase fold L2M54_04545 PF00848 Ring hydroxylating alpha subunit (catalytic domain) L2M54_04545 PF00355 Rieske [2Fe-2S] domain L2M54_04550 PF00171 Aldehyde dehydrogenase family L2M54_04555 PF00970 Oxidoreductase FAD-binding domain L2M54_04555 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_04555 PF00175 Oxidoreductase NAD-binding domain L2M54_04570 PF00795 Carbon-nitrogen hydrolase L2M54_04570 PF02540 NAD synthase L2M54_04580 PF02678 Pirin L2M54_04580 PF05726 Pirin C-terminal cupin domain L2M54_04585 PF03653 Uncharacterised protein family (UPF0093) L2M54_04590 PF02801 Beta-ketoacyl synthase, C-terminal domain L2M54_04590 PF00109 Beta-ketoacyl synthase, N-terminal domain L2M54_04600 PF00164 Ribosomal protein S12/S23 L2M54_04605 PF00177 Ribosomal protein S7p/S5e L2M54_04610 PF00679 Elongation factor G C-terminus L2M54_04610 PF14492 Elongation Factor G, domain II L2M54_04610 PF03764 Elongation factor G, domain IV L2M54_04610 PF00009 Elongation factor Tu GTP binding domain L2M54_04610 PF03144 Elongation factor Tu domain 2 L2M54_04615 PF00009 Elongation factor Tu GTP binding domain L2M54_04615 PF03144 Elongation factor Tu domain 2 L2M54_04615 PF03143 Elongation factor Tu C-terminal domain L2M54_04630 PF00583 Acetyltransferase (GNAT) family L2M54_04635 PF04376 Arginine-tRNA-protein transferase, N terminus L2M54_04635 PF04377 Arginine-tRNA-protein transferase, C terminus L2M54_04640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase L2M54_04645 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_04650 PF01580 FtsK/SpoIIIE family L2M54_04650 PF09397 Ftsk gamma domain L2M54_04650 PF17854 FtsK alpha domain L2M54_04650 PF13491 4TM region of DNA translocase FtsK/SpoIIIE L2M54_04655 PF01810 LysE type translocator L2M54_04665 PF03776 Septum formation topological specificity factor MinE L2M54_04670 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain L2M54_04675 PF03775 Septum formation inhibitor MinC, C-terminal domain L2M54_04685 PF01553 Acyltransferase L2M54_04690 PF00691 OmpA family L2M54_04690 PF13488 Glycine zipper L2M54_04695 PF00580 UvrD/REP helicase N-terminal domain L2M54_04695 PF13361 UvrD-like helicase C-terminal domain L2M54_04700 PF00692 dUTPase L2M54_04705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L2M54_04705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L2M54_04705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L2M54_04705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L2M54_04710 PF00696 Amino acid kinase family L2M54_04720 PF13230 Glutamine amidotransferases class-II L2M54_04725 PF01814 Hemerythrin HHE cation binding domain L2M54_04735 PF03658 RnfH family Ubiquitin L2M54_04740 PF04355 SmpA / OmlA family L2M54_04745 PF01475 Ferric uptake regulator family L2M54_04750 PF00437 Type II/IV secretion system protein L2M54_04755 PF00437 Type II/IV secretion system protein L2M54_04760 PF01168 Alanine racemase, N-terminal domain L2M54_04770 PF00149 Calcineurin-like phosphoesterase L2M54_04770 PF12320 Type 5 capsule protein repressor C-terminal domain L2M54_04790 PF08338 Domain of unknown function (DUF1731) L2M54_04790 PF01370 NAD dependent epimerase/dehydratase family L2M54_04795 PF01266 FAD dependent oxidoreductase L2M54_04800 PF00490 Delta-aminolevulinic acid dehydratase L2M54_04805 PF03061 Thioesterase superfamily L2M54_04810 PF13533 Biotin-lipoyl like L2M54_04815 PF07690 Major Facilitator Superfamily L2M54_04860 PF08671 Anti-repressor SinI L2M54_04860 PF01381 Helix-turn-helix L2M54_04880 PF00083 Sugar (and other) transporter L2M54_04885 PF00701 Dihydrodipicolinate synthetase family L2M54_04910 PF13520 Amino acid permease L2M54_04915 PF02574 Homocysteine S-methyltransferase L2M54_04925 PF06039 Malate:quinone oxidoreductase (Mqo) L2M54_04930 PF00732 GMC oxidoreductase L2M54_04930 PF05199 GMC oxidoreductase L2M54_04935 PF00171 Aldehyde dehydrogenase family L2M54_04940 PF13977 BetI-type transcriptional repressor, C-terminal L2M54_04940 PF00440 Bacterial regulatory proteins, tetR family L2M54_04945 PF02028 BCCT, betaine/carnitine/choline family transporter L2M54_04950 PF02028 BCCT, betaine/carnitine/choline family transporter L2M54_04960 PF03061 Thioesterase superfamily L2M54_04970 PF02492 CobW/HypB/UreG, nucleotide-binding domain L2M54_04970 PF07683 Cobalamin synthesis protein cobW C-terminal domain L2M54_04975 PF00375 Sodium:dicarboxylate symporter family L2M54_04980 PF07152 YaeQ protein L2M54_04985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2M54_04990 PF01522 Polysaccharide deacetylase L2M54_04990 PF14883 Hypothetical glycosyl hydrolase family 13 L2M54_04995 PF00535 Glycosyl transferase family 2 L2M54_05005 PF00378 Enoyl-CoA hydratase/isomerase L2M54_05020 PF01614 Bacterial transcriptional regulator L2M54_05020 PF09339 IclR helix-turn-helix domain L2M54_05025 PF00355 Rieske [2Fe-2S] domain L2M54_05035 PF00355 Rieske [2Fe-2S] domain L2M54_05045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L2M54_05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_05050 PF14759 Reductase C-terminal L2M54_05055 PF07690 Major Facilitator Superfamily L2M54_05065 PF12697 Alpha/beta hydrolase family L2M54_05075 PF03447 Homoserine dehydrogenase, NAD binding domain L2M54_05075 PF01958 Domain of unknown function DUF108 L2M54_05080 PF00171 Aldehyde dehydrogenase family L2M54_05085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L2M54_05085 PF00205 Thiamine pyrophosphate enzyme, central domain L2M54_05085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L2M54_05095 PF07690 Major Facilitator Superfamily L2M54_05100 PF01327 Polypeptide deformylase L2M54_05105 PF04960 Glutaminase L2M54_05110 PF02311 AraC-like ligand binding domain L2M54_05110 PF12833 Helix-turn-helix domain L2M54_05115 PF07690 Major Facilitator Superfamily L2M54_05120 PF01263 Aldose 1-epimerase L2M54_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_05130 PF03466 LysR substrate binding domain L2M54_05140 PF07690 Major Facilitator Superfamily L2M54_05145 PF00456 Transketolase, thiamine diphosphate binding domain L2M54_05150 PF02780 Transketolase, C-terminal domain L2M54_05150 PF02779 Transketolase, pyrimidine binding domain L2M54_05155 PF01695 IstB-like ATP binding protein L2M54_05160 PF02796 Helix-turn-helix domain of resolvase L2M54_05160 PF00665 Integrase core domain L2M54_05190 PF00809 Pterin binding enzyme L2M54_05190 PF02607 B12 binding domain L2M54_05190 PF02310 B12 binding domain L2M54_05190 PF02965 Vitamin B12 dependent methionine synthase, activation domain L2M54_05190 PF02574 Homocysteine S-methyltransferase L2M54_05195 PF01384 Phosphate transporter family L2M54_05200 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_05215 PF03781 Sulfatase-modifying factor enzyme 1 L2M54_05220 PF00884 Sulfatase L2M54_05230 PF01106 NifU-like domain L2M54_05230 PF01521 Iron-sulphur cluster biosynthesis L2M54_05235 PF07715 TonB-dependent Receptor Plug Domain L2M54_05235 PF00593 TonB dependent receptor L2M54_05245 PF00561 alpha/beta hydrolase fold L2M54_05250 PF00484 Carbonic anhydrase L2M54_05255 PF13472 GDSL-like Lipase/Acylhydrolase family L2M54_05260 PF00005 ABC transporter L2M54_05270 PF01694 Rhomboid family L2M54_05275 PF00912 Transglycosylase L2M54_05280 PF13090 Polyphosphate kinase C-terminal domain 2 L2M54_05280 PF17941 Polyphosphate kinase C-terminal domain 1 L2M54_05280 PF13089 Polyphosphate kinase N-terminal domain L2M54_05280 PF02503 Polyphosphate kinase middle domain L2M54_05295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_05295 PF03466 LysR substrate binding domain L2M54_05300 PF00561 alpha/beta hydrolase fold L2M54_05305 PF18113 Rubredoxin binding C-terminal domain L2M54_05305 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_05310 PF00301 Rubredoxin L2M54_05325 PF01336 OB-fold nucleic acid binding domain L2M54_05325 PF00152 tRNA synthetases class II (D, K and N) L2M54_05330 PF14052 Capsule assembly protein Wzi L2M54_05340 PF01507 Phosphoadenosine phosphosulfate reductase family L2M54_05345 PF00009 Elongation factor Tu GTP binding domain L2M54_05360 PF03600 Citrate transporter L2M54_05365 PF01595 Cyclin M transmembrane N-terminal domain L2M54_05365 PF00571 CBS domain L2M54_05365 PF03471 Transporter associated domain L2M54_05370 PF03466 LysR substrate binding domain L2M54_05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_05375 PF00463 Isocitrate lyase family L2M54_05390 PF01774 UreD urease accessory protein L2M54_05395 PF00547 Urease, gamma subunit L2M54_05400 PF00699 Urease beta subunit L2M54_05405 PF00449 Urease alpha-subunit, N-terminal domain L2M54_05405 PF01979 Amidohydrolase family L2M54_05410 PF02814 UreE urease accessory protein, N-terminal domain L2M54_05410 PF05194 UreE urease accessory protein, C-terminal domain L2M54_05415 PF01730 UreF L2M54_05420 PF02492 CobW/HypB/UreG, nucleotide-binding domain L2M54_05435 PF00905 Penicillin binding protein transpeptidase domain L2M54_05435 PF03717 Penicillin-binding Protein dimerisation domain L2M54_05450 PF05191 Adenylate kinase, active site lid L2M54_05460 PF00730 HhH-GPD superfamily base excision DNA repair protein L2M54_05460 PF00633 Helix-hairpin-helix motif L2M54_05460 PF10576 Iron-sulfur binding domain of endonuclease III L2M54_05465 PF04060 Putative Fe-S cluster L2M54_05470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain L2M54_05470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase L2M54_05480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase L2M54_05485 PF02590 Predicted SPOUT methyltransferase L2M54_05490 PF00004 ATPase family associated with various cellular activities (AAA) L2M54_05490 PF05362 Lon protease (S16) C-terminal proteolytic domain L2M54_05490 PF02190 ATP-dependent protease La (LON) substrate-binding domain L2M54_05500 PF00691 OmpA family L2M54_05500 PF04355 SmpA / OmlA family L2M54_05505 PF05662 Coiled stalk of trimeric autotransporter adhesin L2M54_05505 PF05658 Head domain of trimeric autotransporter adhesin L2M54_05505 PF03895 YadA-like membrane anchor domain L2M54_05505 PF13018 Extended Signal Peptide of Type V secretion system L2M54_05505 PF13018 Extended Signal Peptide of Type V secretion system L2M54_05505 PF05658 Head domain of trimeric autotransporter adhesin L2M54_05505 PF03895 YadA-like membrane anchor domain L2M54_05505 PF05662 Coiled stalk of trimeric autotransporter adhesin L2M54_05510 PF04355 SmpA / OmlA family L2M54_05510 PF00691 OmpA family L2M54_05515 PF01812 5-formyltetrahydrofolate cyclo-ligase family L2M54_05595 PF03796 DnaB-like helicase C terminal domain L2M54_05595 PF00772 DnaB-like helicase N terminal domain L2M54_05675 PF04860 Phage portal protein L2M54_06110 PF00557 Metallopeptidase family M24 L2M54_06110 PF05195 Aminopeptidase P, N-terminal domain L2M54_06115 PF01494 FAD binding domain L2M54_06120 PF01494 FAD binding domain L2M54_06130 PF13411 MerR HTH family regulatory protein L2M54_06140 PF01810 LysE type translocator L2M54_06145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_06145 PF03466 LysR substrate binding domain L2M54_06155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases L2M54_06160 PF02021 Uncharacterised protein family UPF0102 L2M54_06165 PF04972 BON domain L2M54_06175 PF00293 NUDIX domain L2M54_06175 PF09297 NADH pyrophosphatase zinc ribbon domain L2M54_06185 PF00929 Exonuclease L2M54_06190 PF01476 LysM domain L2M54_06190 PF01464 Transglycosylase SLT domain L2M54_06190 PF01464 Transglycosylase SLT domain L2M54_06190 PF01476 LysM domain L2M54_06200 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_06205 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_06205 PF12911 N-terminal TM domain of oligopeptide transport permease C L2M54_06210 PF00005 ABC transporter L2M54_06210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L2M54_06215 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_06215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L2M54_06220 PF00593 TonB dependent receptor L2M54_06220 PF07715 TonB-dependent Receptor Plug Domain L2M54_06230 PF00929 Exonuclease L2M54_06235 PF01979 Amidohydrolase family L2M54_06240 PF00563 EAL domain L2M54_06240 PF01590 GAF domain L2M54_06240 PF00990 Diguanylate cyclase, GGDEF domain L2M54_06240 PF00360 Phytochrome region L2M54_06245 PF00764 Arginosuccinate synthase L2M54_06250 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_06250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L2M54_06260 PF13176 Tetratricopeptide repeat L2M54_06260 PF00515 Tetratricopeptide repeat L2M54_06270 PF01042 Endoribonuclease L-PSP L2M54_06275 PF01266 FAD dependent oxidoreductase L2M54_06280 PF03466 LysR substrate binding domain L2M54_06280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_06290 PF03180 NLPA lipoprotein L2M54_06295 PF13276 HTH-like domain L2M54_06295 PF00665 Integrase core domain L2M54_06295 PF13333 Integrase core domain L2M54_06310 PF04717 Type VI secretion system, phage-baseplate injector L2M54_06310 PF13296 Putative type VI secretion system Rhs element Vgr L2M54_06310 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) L2M54_06375 PF03527 RHS protein L2M54_06440 PF00324 Amino acid permease L2M54_06445 PF01266 FAD dependent oxidoreductase L2M54_06450 PF00324 Amino acid permease L2M54_06460 PF07729 FCD domain L2M54_06460 PF00392 Bacterial regulatory proteins, gntR family L2M54_06470 PF00171 Aldehyde dehydrogenase family L2M54_06480 PF00202 Aminotransferase class-III L2M54_06485 PF04958 Arginine N-succinyltransferase beta subunit L2M54_06490 PF00324 Amino acid permease L2M54_06495 PF00171 Aldehyde dehydrogenase family L2M54_06500 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term L2M54_06500 PF12833 Helix-turn-helix domain L2M54_06505 PF00892 EamA-like transporter family L2M54_06510 PF08666 SAF domain L2M54_06510 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus L2M54_06515 PF07690 Major Facilitator Superfamily L2M54_06520 PF13378 Enolase C-terminal domain-like L2M54_06525 PF00701 Dihydrodipicolinate synthetase family L2M54_06530 PF00171 Aldehyde dehydrogenase family L2M54_06535 PF00392 Bacterial regulatory proteins, gntR family L2M54_06535 PF07729 FCD domain L2M54_06540 PF07519 Tannase and feruloyl esterase L2M54_06555 PF03573 outer membrane porin, OprD family L2M54_06560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_06560 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_06560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_06570 PF00171 Aldehyde dehydrogenase family L2M54_06575 PF00378 Enoyl-CoA hydratase/isomerase L2M54_06580 PF07690 Major Facilitator Superfamily L2M54_06595 PF00175 Oxidoreductase NAD-binding domain L2M54_06595 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_06600 PF00355 Rieske [2Fe-2S] domain L2M54_06610 PF03781 Sulfatase-modifying factor enzyme 1 L2M54_06615 PF00884 Sulfatase L2M54_06620 PF07690 Major Facilitator Superfamily L2M54_06625 PF03573 outer membrane porin, OprD family L2M54_06630 PF05199 GMC oxidoreductase L2M54_06635 PF07859 alpha/beta hydrolase fold L2M54_06640 PF00106 short chain dehydrogenase L2M54_06645 PF00743 Flavin-binding monooxygenase-like L2M54_06650 PF12833 Helix-turn-helix domain L2M54_06655 PF04072 Leucine carboxyl methyltransferase L2M54_06660 PF00743 Flavin-binding monooxygenase-like L2M54_06665 PF00106 short chain dehydrogenase L2M54_06675 PF00440 Bacterial regulatory proteins, tetR family L2M54_06675 PF17932 Tetracyclin repressor-like, C-terminal domain L2M54_06680 PF02678 Pirin L2M54_06680 PF17954 Quercetinase C-terminal cupin domain L2M54_06690 PF00106 short chain dehydrogenase L2M54_06705 PF00860 Permease family L2M54_06710 PF00962 Adenosine/AMP deaminase L2M54_06720 PF01292 Prokaryotic cytochrome b561 L2M54_06730 PF01351 Ribonuclease HII L2M54_06735 PF02599 Global regulator protein family L2M54_06740 PF13840 ACT domain L2M54_06740 PF01842 ACT domain L2M54_06740 PF00696 Amino acid kinase family L2M54_06745 PF02272 DHHA1 domain L2M54_06745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain L2M54_06745 PF01411 tRNA synthetases class II (A) L2M54_06750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L2M54_06750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L2M54_06755 PF13393 Histidyl-tRNA synthetase L2M54_06760 PF00709 Adenylosuccinate synthetase L2M54_06775 PF00248 Aldo/keto reductase family L2M54_06780 PF13545 Crp-like helix-turn-helix domain L2M54_06780 PF00027 Cyclic nucleotide-binding domain L2M54_06790 PF02566 OsmC-like protein L2M54_06805 PF00004 ATPase family associated with various cellular activities (AAA) L2M54_06805 PF07724 AAA domain (Cdc48 subfamily) L2M54_06805 PF17871 AAA lid domain L2M54_06805 PF02861 Clp amino terminal domain, pathogenicity island component L2M54_06805 PF10431 C-terminal, D2-small domain, of ClpB protein L2M54_06820 PF10672 S-adenosylmethionine-dependent methyltransferase L2M54_06820 PF02926 THUMP domain L2M54_06820 PF01170 Putative RNA methylase family UPF0020 L2M54_06830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L2M54_06830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L2M54_06835 PF01979 Amidohydrolase family L2M54_06840 PF13488 Glycine zipper L2M54_06840 PF00691 OmpA family L2M54_06850 PF00043 Glutathione S-transferase, C-terminal domain L2M54_06850 PF13417 Glutathione S-transferase, N-terminal domain L2M54_06855 PF02390 Putative methyltransferase L2M54_06865 PF02798 Glutathione S-transferase, N-terminal domain L2M54_06865 PF00043 Glutathione S-transferase, C-terminal domain L2M54_06875 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_06875 PF13192 Thioredoxin domain L2M54_06895 PF00578 AhpC/TSA family L2M54_06895 PF10417 C-terminal domain of 1-Cys peroxiredoxin L2M54_06900 PF00270 DEAD/DEAH box helicase L2M54_06900 PF11898 Domain of unknown function (DUF3418) L2M54_06900 PF04408 Helicase associated domain (HA2) L2M54_06900 PF00271 Helicase conserved C-terminal domain L2M54_06900 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold L2M54_06905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III L2M54_06905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal L2M54_06915 PF07690 Major Facilitator Superfamily L2M54_06920 PF03594 Benzoate membrane transport protein L2M54_06925 PF00106 short chain dehydrogenase L2M54_06930 PF00970 Oxidoreductase FAD-binding domain L2M54_06930 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_06930 PF00175 Oxidoreductase NAD-binding domain L2M54_06940 PF00355 Rieske [2Fe-2S] domain L2M54_06940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) L2M54_06950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_06950 PF03466 LysR substrate binding domain L2M54_06960 PF00403 Heavy-metal-associated domain L2M54_06965 PF00376 MerR family regulatory protein L2M54_06965 PF09278 MerR, DNA binding L2M54_07030 PF01810 LysE type translocator L2M54_07035 PF00313 'Cold-shock' DNA-binding domain L2M54_07045 PF14748 Pyrroline-5-carboxylate reductase dimerisation L2M54_07045 PF03807 NADP oxidoreductase coenzyme F420-dependent L2M54_07075 PF01638 HxlR-like helix-turn-helix L2M54_07110 PF09190 DALR domain L2M54_07110 PF01406 tRNA synthetases class I (C) catalytic domain L2M54_07115 PF00571 CBS domain L2M54_07115 PF01380 SIS domain L2M54_07130 PF03968 OstA-like protein L2M54_07135 PF00005 ABC transporter L2M54_07135 PF12399 Branched-chain amino acid ATP-binding cassette transporter L2M54_07140 PF02321 Outer membrane efflux protein L2M54_07145 PF03412 Peptidase C39 family L2M54_07145 PF00005 ABC transporter L2M54_07145 PF00664 ABC transporter transmembrane region L2M54_07155 PF01205 Uncharacterized protein family UPF0029 L2M54_07160 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_07170 PF01596 O-methyltransferase L2M54_07180 PF00037 4Fe-4S binding domain L2M54_07180 PF11953 Domain of unknown function (DUF3470) L2M54_07190 PF05190 MutS family domain IV L2M54_07190 PF05192 MutS domain III L2M54_07190 PF01624 MutS domain I L2M54_07190 PF00488 MutS domain V L2M54_07190 PF05188 MutS domain II L2M54_07195 PF01037 Lrp/AsnC ligand binding domain L2M54_07205 PF00563 EAL domain L2M54_07205 PF03707 Bacterial signalling protein N terminal repeat L2M54_07205 PF00990 Diguanylate cyclase, GGDEF domain L2M54_07210 PF03279 Bacterial lipid A biosynthesis acyltransferase L2M54_07245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain L2M54_07245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L2M54_07265 PF13419 Haloacid dehalogenase-like hydrolase L2M54_07375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07375 PF03466 LysR substrate binding domain L2M54_07380 PF01566 Natural resistance-associated macrophage protein L2M54_07385 PF03746 LamB/YcsF family L2M54_07390 PF07286 Protein of unknown function (DUF1445) L2M54_07400 PF02785 Biotin carboxylase C-terminal domain L2M54_07400 PF00289 Biotin carboxylase, N-terminal domain L2M54_07400 PF00364 Biotin-requiring enzyme L2M54_07400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2M54_07405 PF00654 Voltage gated chloride channel L2M54_07410 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB L2M54_07410 PF08479 POTRA domain, ShlB-type L2M54_07410 PF17287 POTRA domain L2M54_07415 PF13018 Extended Signal Peptide of Type V secretion system L2M54_07415 PF13332 Hemagglutinin repeat L2M54_07415 PF05860 haemagglutination activity domain L2M54_07415 PF04829 Pre-toxin domain with VENN motif L2M54_07435 PF13333 Integrase core domain L2M54_07435 PF13276 HTH-like domain L2M54_07435 PF00665 Integrase core domain L2M54_07455 PF00872 Transposase, Mutator family L2M54_07460 PF00694 Aconitase C-terminal domain L2M54_07465 PF00330 Aconitase family (aconitate hydratase) L2M54_07475 PF02515 CoA-transferase family III L2M54_07480 PF00682 HMGL-like L2M54_07485 PF07690 Major Facilitator Superfamily L2M54_07490 PF00199 Catalase L2M54_07495 PF01292 Prokaryotic cytochrome b561 L2M54_07515 PF12697 Alpha/beta hydrolase family L2M54_07520 PF01613 Flavin reductase like domain L2M54_07525 PF00296 Luciferase-like monooxygenase L2M54_07530 PF00171 Aldehyde dehydrogenase family L2M54_07540 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin L2M54_07550 PF00171 Aldehyde dehydrogenase family L2M54_07555 PF02627 Carboxymuconolactone decarboxylase family L2M54_07560 PF03466 LysR substrate binding domain L2M54_07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07565 PF02525 Flavodoxin-like fold L2M54_07570 PF01614 Bacterial transcriptional regulator L2M54_07570 PF09339 IclR helix-turn-helix domain L2M54_07575 PF01494 FAD binding domain L2M54_07580 PF07702 UTRA domain L2M54_07580 PF00392 Bacterial regulatory proteins, gntR family L2M54_07590 PF00005 ABC transporter L2M54_07590 PF08402 TOBE domain L2M54_07595 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_07600 PF01266 FAD dependent oxidoreductase L2M54_07605 PF00266 Aminotransferase class-V L2M54_07610 PF13419 Haloacid dehalogenase-like hydrolase L2M54_07615 PF07690 Major Facilitator Superfamily L2M54_07620 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_07620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_07620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_07625 PF02515 CoA-transferase family III L2M54_07630 PF09339 IclR helix-turn-helix domain L2M54_07635 PF00378 Enoyl-CoA hydratase/isomerase L2M54_07640 PF03060 Nitronate monooxygenase L2M54_07645 PF07690 Major Facilitator Superfamily L2M54_07650 PF09339 IclR helix-turn-helix domain L2M54_07655 PF02803 Thiolase, C-terminal domain L2M54_07655 PF00108 Thiolase, N-terminal domain L2M54_07660 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain L2M54_07660 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L2M54_07660 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain L2M54_07670 PF00378 Enoyl-CoA hydratase/isomerase L2M54_07675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_07675 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_07675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_07680 PF07690 Major Facilitator Superfamily L2M54_07685 PF01144 Coenzyme A transferase L2M54_07690 PF01144 Coenzyme A transferase L2M54_07700 PF07690 Major Facilitator Superfamily L2M54_07710 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_07710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_07710 PF12806 Acetyl-CoA dehydrogenase C-terminal like L2M54_07710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_07725 PF03466 LysR substrate binding domain L2M54_07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07730 PF00682 HMGL-like L2M54_07735 PF02785 Biotin carboxylase C-terminal domain L2M54_07735 PF00289 Biotin carboxylase, N-terminal domain L2M54_07735 PF00364 Biotin-requiring enzyme L2M54_07735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2M54_07735 PF18140 Propionyl-coenzyme A carboxylase BT domain L2M54_07740 PF00378 Enoyl-CoA hydratase/isomerase L2M54_07745 PF01039 Carboxyl transferase domain L2M54_07750 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_07750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_07750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_07755 PF00440 Bacterial regulatory proteins, tetR family L2M54_07760 PF00501 AMP-binding enzyme L2M54_07760 PF13193 AMP-binding enzyme C-terminal domain L2M54_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07780 PF03466 LysR substrate binding domain L2M54_07815 PF13737 Transposase DDE domain L2M54_07820 PF02464 Competence-damaged protein L2M54_07820 PF00994 Probable molybdopterin binding domain L2M54_07820 PF18146 Damage-inducible protein CinA KH domain L2M54_07830 PF00199 Catalase L2M54_07830 PF06628 Catalase-related immune-responsive L2M54_07830 PF18011 C-terminal domain found in long catalases L2M54_07860 PF00717 Peptidase S24-like L2M54_07870 PF01037 Lrp/AsnC ligand binding domain L2M54_07870 PF13404 AsnC-type helix-turn-helix domain L2M54_07880 PF00072 Response regulator receiver domain L2M54_07880 PF00512 His Kinase A (phospho-acceptor) domain L2M54_07880 PF09308 LuxQ, periplasmic L2M54_07880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_07885 PF00072 Response regulator receiver domain L2M54_07900 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_07905 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_07910 PF00005 ABC transporter L2M54_07915 PF00497 Bacterial extracellular solute-binding proteins, family 3 L2M54_07920 PF00497 Bacterial extracellular solute-binding proteins, family 3 L2M54_07930 PF03466 LysR substrate binding domain L2M54_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07935 PF01810 LysE type translocator L2M54_07940 PF00266 Aminotransferase class-V L2M54_07955 PF00581 Rhodanese-like domain L2M54_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07965 PF03466 LysR substrate binding domain L2M54_07970 PF02798 Glutathione S-transferase, N-terminal domain L2M54_07975 PF14834 Glutathione S-transferase, C-terminal domain L2M54_07975 PF02798 Glutathione S-transferase, N-terminal domain L2M54_07980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_07980 PF03466 LysR substrate binding domain L2M54_07985 PF03788 LrgA family L2M54_07990 PF04172 LrgB-like family L2M54_07995 PF00392 Bacterial regulatory proteins, gntR family L2M54_07995 PF00155 Aminotransferase class I and II L2M54_08010 PF07690 Major Facilitator Superfamily L2M54_08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_08020 PF03466 LysR substrate binding domain L2M54_08025 PF16957 Malonate decarboxylase, alpha subunit, transporter L2M54_08030 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase L2M54_08035 PF06857 Malonate decarboxylase delta subunit (MdcD) L2M54_08040 PF01039 Carboxyl transferase domain L2M54_08050 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG L2M54_08055 PF00698 Acyl transferase domain L2M54_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_08070 PF03466 LysR substrate binding domain L2M54_08075 PF00155 Aminotransferase class I and II L2M54_08075 PF00392 Bacterial regulatory proteins, gntR family L2M54_08085 PF02322 Cytochrome bd terminal oxidase subunit II L2M54_08090 PF01654 Cytochrome bd terminal oxidase subunit I L2M54_08105 PF00296 Luciferase-like monooxygenase L2M54_08110 PF00083 Sugar (and other) transporter L2M54_08120 PF04069 Substrate binding domain of ABC-type glycine betaine transport system L2M54_08125 PF00005 ABC transporter L2M54_08130 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_08135 PF02668 Taurine catabolism dioxygenase TauD, TfdA family L2M54_08140 PF01177 Asp/Glu/Hydantoin racemase L2M54_08145 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin L2M54_08155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_08155 PF03466 LysR substrate binding domain L2M54_08165 PF01979 Amidohydrolase family L2M54_08165 PF13382 Adenine deaminase C-terminal domain L2M54_08175 PF03960 ArsC family L2M54_08180 PF01022 Bacterial regulatory protein, arsR family L2M54_08185 PF01758 Sodium Bile acid symporter family L2M54_08190 PF03466 LysR substrate binding domain L2M54_08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_08205 PF13192 Thioredoxin domain L2M54_08205 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_08220 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_08225 PF00588 SpoU rRNA Methylase family L2M54_08230 PF07733 Bacterial DNA polymerase III alpha NTPase domain L2M54_08230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain L2M54_08230 PF14579 Helix-hairpin-helix motif L2M54_08230 PF02811 PHP domain L2M54_08230 PF01336 OB-fold nucleic acid binding domain L2M54_08235 PF00710 Asparaginase, N-terminal L2M54_08235 PF17763 Glutaminase/Asparaginase C-terminal domain L2M54_08240 PF00375 Sodium:dicarboxylate symporter family L2M54_08245 PF00155 Aminotransferase class I and II L2M54_08250 PF01641 SelR domain L2M54_08255 PF00255 Glutathione peroxidase L2M54_08260 PF12833 Helix-turn-helix domain L2M54_08260 PF12852 Cupin L2M54_08270 PF00155 Aminotransferase class I and II L2M54_08275 PF08335 GlnD PII-uridylyltransferase L2M54_08275 PF01966 HD domain L2M54_08275 PF01909 Nucleotidyltransferase domain L2M54_08280 PF02222 ATP-grasp domain L2M54_08290 PF05437 Branched-chain amino acid transport protein (AzlD) L2M54_08295 PF03591 AzlC protein L2M54_08320 PF01926 50S ribosome-binding GTPase L2M54_08320 PF06071 Protein of unknown function (DUF933) L2M54_08325 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_08330 PF09383 NIL domain L2M54_08330 PF00005 ABC transporter L2M54_08335 PF03180 NLPA lipoprotein L2M54_08340 PF03180 NLPA lipoprotein L2M54_08345 PF00296 Luciferase-like monooxygenase L2M54_08355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_08355 PF08028 Acyl-CoA dehydrogenase, C-terminal domain L2M54_08370 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_08375 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_08380 PF00005 ABC transporter L2M54_08390 PF01037 Lrp/AsnC ligand binding domain L2M54_08395 PF01709 Transcriptional regulator L2M54_08405 PF00440 Bacterial regulatory proteins, tetR family L2M54_08425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_08425 PF03466 LysR substrate binding domain L2M54_08435 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin L2M54_08445 PF00892 EamA-like transporter family L2M54_08460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term L2M54_08460 PF12833 Helix-turn-helix domain L2M54_08470 PF13953 PapC C-terminal domain L2M54_08470 PF13954 PapC N-terminal domain L2M54_08470 PF00577 Outer membrane usher protein L2M54_08475 PF02753 Pili assembly chaperone PapD, C-terminal domain L2M54_08475 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain L2M54_08480 PF16970 Type-1 fimbrial protein, A L2M54_08495 PF04055 Radical SAM superfamily L2M54_08495 PF06968 Biotin and Thiamin Synthesis associated domain L2M54_08500 PF08331 Domain of unknown function (DUF1730) L2M54_08510 PF02075 Crossover junction endodeoxyribonuclease RuvC L2M54_08525 PF00905 Penicillin binding protein transpeptidase domain L2M54_08545 PF02773 S-adenosylmethionine synthetase, C-terminal domain L2M54_08545 PF02772 S-adenosylmethionine synthetase, central domain L2M54_08545 PF00438 S-adenosylmethionine synthetase, N-terminal domain L2M54_08550 PF00456 Transketolase, thiamine diphosphate binding domain L2M54_08550 PF02779 Transketolase, pyrimidine binding domain L2M54_08550 PF02780 Transketolase, C-terminal domain L2M54_08560 PF04264 YceI-like domain L2M54_08570 PF09992 Phosphodiester glycosidase L2M54_08580 PF05958 tRNA (Uracil-5-)-methyltransferase L2M54_08585 PF04229 GrpB protein L2M54_08590 PF00171 Aldehyde dehydrogenase family L2M54_08590 PF01619 Proline dehydrogenase L2M54_08590 PF14850 DNA-binding domain of Proline dehydrogenase L2M54_08590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain L2M54_08595 PF01037 Lrp/AsnC ligand binding domain L2M54_08600 PF00474 Sodium:solute symporter family L2M54_08605 PF02146 Sir2 family L2M54_08610 PF01597 Glycine cleavage H-protein L2M54_08615 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term L2M54_08615 PF12833 Helix-turn-helix domain L2M54_08625 PF00664 ABC transporter transmembrane region L2M54_08625 PF00005 ABC transporter L2M54_08630 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) L2M54_08635 PF06912 Protein of unknown function (DUF1275) L2M54_08640 PF00375 Sodium:dicarboxylate symporter family L2M54_08655 PF08007 Cupin superfamily protein L2M54_08660 PF02545 Maf-like protein L2M54_08670 PF00162 Phosphoglycerate kinase L2M54_08680 PF01116 Fructose-bisphosphate aldolase class-II L2M54_08685 PF00639 PPIC-type PPIASE domain L2M54_08685 PF09312 SurA N-terminal domain L2M54_08690 PF04453 LPS transport system D L2M54_08690 PF03968 OstA-like protein L2M54_08695 PF01636 Phosphotransferase enzyme family L2M54_08700 PF00483 Nucleotidyl transferase L2M54_08705 PF02527 rRNA small subunit methyltransferase G L2M54_08710 PF13614 AAA domain L2M54_08715 PF02195 ParB-like nuclease domain L2M54_08715 PF17762 HTH domain found in ParB protein L2M54_08720 PF01618 MotA/TolQ/ExbB proton channel family L2M54_08730 PF00664 ABC transporter transmembrane region L2M54_08730 PF00005 ABC transporter L2M54_08735 PF02606 Tetraacyldisaccharide-1-P 4'-kinase L2M54_08740 PF02348 Cytidylyltransferase L2M54_08745 PF09115 DNA polymerase III, delta subunit, C terminal L2M54_08755 PF01026 TatD related DNase L2M54_08770 PF07963 Prokaryotic N-terminal methylation motif L2M54_08770 PF02501 Type II secretion system (T2SS), protein I L2M54_08775 PF07963 Prokaryotic N-terminal methylation motif L2M54_08775 PF11612 Type II secretion system (T2SS), protein J L2M54_08780 PF03934 Type II secretion system (T2SS), protein K L2M54_08790 PF03167 Uracil DNA glycosylase superfamily L2M54_08800 PF14437 MafB19-like deaminase L2M54_08810 PF02224 Cytidylate kinase L2M54_08815 PF00575 S1 RNA binding domain L2M54_08820 PF00216 Bacterial DNA-binding protein L2M54_08830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family L2M54_08840 PF00743 Flavin-binding monooxygenase-like L2M54_08850 PF03969 AFG1-like ATPase L2M54_08855 PF01274 Malate synthase L2M54_08860 PF02472 Biopolymer transport protein ExbD/TolR L2M54_08865 PF02472 Biopolymer transport protein ExbD/TolR L2M54_08870 PF01618 MotA/TolQ/ExbB proton channel family L2M54_08880 PF07715 TonB-dependent Receptor Plug Domain L2M54_08880 PF00593 TonB dependent receptor L2M54_08895 PF01432 Peptidase family M3 L2M54_08900 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_08905 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_08910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region L2M54_08910 PF00005 ABC transporter L2M54_08925 PF00459 Inositol monophosphatase family L2M54_08935 PF01649 Ribosomal protein S20 L2M54_08940 PF13460 NAD(P)H-binding L2M54_08945 PF03737 Aldolase/RraA L2M54_08965 PF17757 UvrB interaction domain L2M54_08965 PF03461 TRCF domain L2M54_08965 PF00270 DEAD/DEAH box helicase L2M54_08965 PF02559 CarD-like/TRCF domain L2M54_08965 PF00271 Helicase conserved C-terminal domain L2M54_08975 PF00211 Adenylate and Guanylate cyclase catalytic domain L2M54_08980 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_08985 PF00012 Hsp70 protein L2M54_08990 PF00226 DnaJ domain L2M54_08990 PF07743 HSCB C-terminal oligomerisation domain L2M54_08995 PF01521 Iron-sulphur cluster biosynthesis L2M54_09000 PF01592 NifU-like N terminal domain L2M54_09005 PF00266 Aminotransferase class-V L2M54_09010 PF02082 Transcriptional regulator L2M54_09025 PF00216 Bacterial DNA-binding protein L2M54_09030 PF00639 PPIC-type PPIASE domain L2M54_09030 PF09312 SurA N-terminal domain L2M54_09035 PF12852 Cupin L2M54_09035 PF12833 Helix-turn-helix domain L2M54_09040 PF00487 Fatty acid desaturase L2M54_09045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_09045 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_09045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_09050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_09050 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_09050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_09055 PF03109 ABC1 family L2M54_09065 PF04073 Aminoacyl-tRNA editing domain L2M54_09070 PF06276 Ferric iron reductase FhuF-like transporter L2M54_09070 PF04183 IucA / IucC family L2M54_09075 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) L2M54_09080 PF07690 Major Facilitator Superfamily L2M54_09085 PF04183 IucA / IucC family L2M54_09085 PF06276 Ferric iron reductase FhuF-like transporter L2M54_09090 PF06276 Ferric iron reductase FhuF-like transporter L2M54_09090 PF04183 IucA / IucC family L2M54_09100 PF03737 Aldolase/RraA L2M54_09105 PF07715 TonB-dependent Receptor Plug Domain L2M54_09105 PF00593 TonB dependent receptor L2M54_09130 PF13419 Haloacid dehalogenase-like hydrolase L2M54_09140 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase L2M54_09145 PF02277 Phosphoribosyltransferase L2M54_09150 PF00300 Histidine phosphatase superfamily (branch 1) L2M54_09165 PF00793 DAHP synthetase I family L2M54_09170 PF01925 Sulfite exporter TauE/SafE L2M54_09190 PF07715 TonB-dependent Receptor Plug Domain L2M54_09190 PF00593 TonB dependent receptor L2M54_09195 PF02684 Lipid-A-disaccharide synthetase L2M54_09210 PF01695 IstB-like ATP binding protein L2M54_09215 PF00665 Integrase core domain L2M54_09215 PF02796 Helix-turn-helix domain of resolvase L2M54_09225 PF00005 ABC transporter L2M54_09260 PF01230 HIT domain L2M54_09290 PF08241 Methyltransferase domain L2M54_09295 PF00561 alpha/beta hydrolase fold L2M54_09300 PF01053 Cys/Met metabolism PLP-dependent enzyme L2M54_09310 PF02575 YbaB/EbfC DNA-binding family L2M54_09315 PF02132 RecR protein L2M54_09315 PF13662 Toprim domain L2M54_09320 PF01612 3'-5' exonuclease L2M54_09320 PF00570 HRDC domain L2M54_09330 PF13737 Transposase DDE domain L2M54_09345 PF05166 YcgL domain L2M54_09355 PF00004 ATPase family associated with various cellular activities (AAA) L2M54_09355 PF17862 AAA+ lid domain L2M54_09355 PF01434 Peptidase family M41 L2M54_09365 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_09370 PF05175 Methyltransferase small domain L2M54_09375 PF01264 Chorismate synthase L2M54_09380 PF08448 PAS fold L2M54_09380 PF00990 Diguanylate cyclase, GGDEF domain L2M54_09395 PF04055 Radical SAM superfamily L2M54_09400 PF00676 Dehydrogenase E1 component L2M54_09405 PF02779 Transketolase, pyrimidine binding domain L2M54_09405 PF02780 Transketolase, C-terminal domain L2M54_09410 PF02817 e3 binding domain L2M54_09410 PF00364 Biotin-requiring enzyme L2M54_09410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L2M54_09415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L2M54_09415 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_09420 PF00106 short chain dehydrogenase L2M54_09425 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_09425 PF00107 Zinc-binding dehydrogenase L2M54_09430 PF01062 Bestrophin, RFP-TM, chloride channel L2M54_09435 PF02954 Bacterial regulatory protein, Fis family L2M54_09435 PF00158 Sigma-54 interaction domain L2M54_09435 PF00072 Response regulator receiver domain L2M54_09440 PF00753 Metallo-beta-lactamase superfamily L2M54_09440 PF04273 Putative phosphatase (DUF442) L2M54_09455 PF01925 Sulfite exporter TauE/SafE L2M54_09470 PF12833 Helix-turn-helix domain L2M54_09470 PF06445 GyrI-like small molecule binding domain L2M54_09475 PF01638 HxlR-like helix-turn-helix L2M54_09480 PF02525 Flavodoxin-like fold L2M54_09490 PF07702 UTRA domain L2M54_09490 PF00392 Bacterial regulatory proteins, gntR family L2M54_09505 PF04069 Substrate binding domain of ABC-type glycine betaine transport system L2M54_09510 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_09515 PF00005 ABC transporter L2M54_09530 PF00083 Sugar (and other) transporter L2M54_09535 PF07715 TonB-dependent Receptor Plug Domain L2M54_09535 PF00593 TonB dependent receptor L2M54_09540 PF10415 Fumarase C C-terminus L2M54_09540 PF00206 Lyase L2M54_09555 PF03466 LysR substrate binding domain L2M54_09555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_09560 PF03466 LysR substrate binding domain L2M54_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_09565 PF00108 Thiolase, N-terminal domain L2M54_09565 PF02803 Thiolase, C-terminal domain L2M54_09570 PF02667 Short chain fatty acid transporter L2M54_09575 PF01144 Coenzyme A transferase L2M54_09580 PF01144 Coenzyme A transferase L2M54_09585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_09585 PF03466 LysR substrate binding domain L2M54_09605 PF12833 Helix-turn-helix domain L2M54_09605 PF06719 AraC-type transcriptional regulator N-terminus L2M54_09610 PF07690 Major Facilitator Superfamily L2M54_09615 PF01738 Dienelactone hydrolase family L2M54_09630 PF01613 Flavin reductase like domain L2M54_09640 PF14525 AraC-binding-like domain L2M54_09640 PF12833 Helix-turn-helix domain L2M54_09645 PF00970 Oxidoreductase FAD-binding domain L2M54_09645 PF00175 Oxidoreductase NAD-binding domain L2M54_09645 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_09650 PF00866 Ring hydroxylating beta subunit L2M54_09655 PF00355 Rieske [2Fe-2S] domain L2M54_09655 PF00848 Ring hydroxylating alpha subunit (catalytic domain) L2M54_09660 PF03459 TOBE domain L2M54_09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_09670 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_09675 PF03459 TOBE domain L2M54_09675 PF00005 ABC transporter L2M54_09680 PF00106 short chain dehydrogenase L2M54_09685 PF00550 Phosphopantetheine attachment site L2M54_09685 PF00857 Isochorismatase family L2M54_09695 PF00149 Calcineurin-like phosphoesterase L2M54_09700 PF13089 Polyphosphate kinase N-terminal domain L2M54_09700 PF17941 Polyphosphate kinase C-terminal domain 1 L2M54_09700 PF02503 Polyphosphate kinase middle domain L2M54_09700 PF13090 Polyphosphate kinase C-terminal domain 2 L2M54_09705 PF08042 PqqA family L2M54_09710 PF12706 Beta-lactamase superfamily domain L2M54_09715 PF03070 TENA/THI-4/PQQC family L2M54_09720 PF05402 Coenzyme PQQ synthesis protein D (PqqD) L2M54_09725 PF13186 Iron-sulfur cluster-binding domain L2M54_09725 PF04055 Radical SAM superfamily L2M54_09730 PF01244 Membrane dipeptidase (Peptidase family M19) L2M54_09745 PF13091 PLD-like domain L2M54_09760 PF00199 Catalase L2M54_09770 PF00107 Zinc-binding dehydrogenase L2M54_09770 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_09780 PF00419 Fimbrial protein L2M54_09785 PF13953 PapC C-terminal domain L2M54_09785 PF00577 Outer membrane usher protein L2M54_09785 PF13954 PapC N-terminal domain L2M54_09790 PF02753 Pili assembly chaperone PapD, C-terminal domain L2M54_09790 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain L2M54_09795 PF16970 Type-1 fimbrial protein, A L2M54_09835 PF01695 IstB-like ATP binding protein L2M54_09840 PF00665 Integrase core domain L2M54_09840 PF02796 Helix-turn-helix domain of resolvase L2M54_09855 PF01266 FAD dependent oxidoreductase L2M54_09865 PF00743 Flavin-binding monooxygenase-like L2M54_09870 PF12146 Serine aminopeptidase, S33 L2M54_09875 PF02321 Outer membrane efflux protein L2M54_09880 PF00873 AcrB/AcrD/AcrF family L2M54_09885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2M54_09885 PF00529 HlyD membrane-fusion protein of T1SS L2M54_09890 PF00486 Transcriptional regulatory protein, C terminal L2M54_09890 PF00072 Response regulator receiver domain L2M54_09895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_09895 PF16527 Two-component sensor protein CpxA, periplasmic domain L2M54_09895 PF00672 HAMP domain L2M54_09895 PF00512 His Kinase A (phospho-acceptor) domain L2M54_09915 PF12146 Serine aminopeptidase, S33 L2M54_09930 PF03466 LysR substrate binding domain L2M54_09930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_09935 PF12146 Serine aminopeptidase, S33 L2M54_09965 PF13333 Integrase core domain L2M54_09965 PF00665 Integrase core domain L2M54_09965 PF13276 HTH-like domain L2M54_09980 PF13291 ACT domain L2M54_09980 PF02824 TGS domain L2M54_09980 PF04607 Region found in RelA / SpoT proteins L2M54_09990 PF01975 Survival protein SurE L2M54_10015 PF07690 Major Facilitator Superfamily L2M54_10020 PF13533 Biotin-lipoyl like L2M54_10035 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family L2M54_10060 PF00005 ABC transporter L2M54_10065 PF01032 FecCD transport family L2M54_10080 PF00107 Zinc-binding dehydrogenase L2M54_10080 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_10085 PF06719 AraC-type transcriptional regulator N-terminus L2M54_10085 PF12833 Helix-turn-helix domain L2M54_10090 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase L2M54_10090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase L2M54_10100 PF01370 NAD dependent epimerase/dehydratase family L2M54_10105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_10105 PF03466 LysR substrate binding domain L2M54_10115 PF00920 Dehydratase family L2M54_10120 PF00171 Aldehyde dehydrogenase family L2M54_10135 PF13533 Biotin-lipoyl like L2M54_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_10150 PF03466 LysR substrate binding domain L2M54_10160 PF08450 SMP-30/Gluconolactonase/LRE-like region L2M54_10165 PF00392 Bacterial regulatory proteins, gntR family L2M54_10165 PF07702 UTRA domain L2M54_10175 PF04909 Amidohydrolase L2M54_10180 PF07690 Major Facilitator Superfamily L2M54_10185 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) L2M54_10225 PF13737 Transposase DDE domain L2M54_10245 PF07687 Peptidase dimerisation domain L2M54_10245 PF01546 Peptidase family M20/M25/M40 L2M54_10255 PF02254 TrkA-N domain L2M54_10255 PF00999 Sodium/hydrogen exchanger family L2M54_10260 PF07995 Glucose / Sorbosone dehydrogenase L2M54_10265 PF03466 LysR substrate binding domain L2M54_10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_10270 PF00857 Isochorismatase family L2M54_10280 PF00440 Bacterial regulatory proteins, tetR family L2M54_10280 PF08359 YsiA-like protein, C-terminal region L2M54_10285 PF12706 Beta-lactamase superfamily domain L2M54_10295 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_10305 PF00376 MerR family regulatory protein L2M54_10305 PF09278 MerR, DNA binding L2M54_10310 PF01872 RibD C-terminal domain L2M54_10315 PF00106 short chain dehydrogenase L2M54_10320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L2M54_10320 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_10325 PF00561 alpha/beta hydrolase fold L2M54_10335 PF00171 Aldehyde dehydrogenase family L2M54_10345 PF07690 Major Facilitator Superfamily L2M54_10350 PF00920 Dehydratase family L2M54_10355 PF07729 FCD domain L2M54_10355 PF00392 Bacterial regulatory proteins, gntR family L2M54_10375 PF00171 Aldehyde dehydrogenase family L2M54_10385 PF01179 Copper amine oxidase, enzyme domain L2M54_10385 PF02728 Copper amine oxidase, N3 domain L2M54_10385 PF07833 Copper amine oxidase N-terminal domain L2M54_10385 PF02727 Copper amine oxidase, N2 domain L2M54_10390 PF12833 Helix-turn-helix domain L2M54_10390 PF02311 AraC-like ligand binding domain L2M54_10395 PF01613 Flavin reductase like domain L2M54_10400 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_10400 PF00175 Oxidoreductase NAD-binding domain L2M54_10415 PF00355 Rieske [2Fe-2S] domain L2M54_10415 PF00848 Ring hydroxylating alpha subunit (catalytic domain) L2M54_10430 PF08028 Acyl-CoA dehydrogenase, C-terminal domain L2M54_10435 PF01425 Amidase L2M54_10445 PF07690 Major Facilitator Superfamily L2M54_10455 PF00106 short chain dehydrogenase L2M54_10470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_10470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_10470 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_10475 PF03466 LysR substrate binding domain L2M54_10480 PF09339 IclR helix-turn-helix domain L2M54_10480 PF01614 Bacterial transcriptional regulator L2M54_10485 PF00753 Metallo-beta-lactamase superfamily L2M54_10495 PF04143 Sulphur transport L2M54_10505 PF13360 PQQ-like domain L2M54_10505 PF01011 PQQ enzyme repeat L2M54_10510 PF04966 Carbohydrate-selective porin, OprB family L2M54_10515 PF05048 Periplasmic copper-binding protein (NosD) L2M54_10520 PF01487 Type I 3-dehydroquinase L2M54_10525 PF00775 Dioxygenase L2M54_10530 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal L2M54_10530 PF00775 Dioxygenase L2M54_10535 PF02627 Carboxymuconolactone decarboxylase family L2M54_10540 PF07690 Major Facilitator Superfamily L2M54_10545 PF00561 alpha/beta hydrolase fold L2M54_10550 PF00206 Lyase L2M54_10550 PF10397 Adenylosuccinate lyase C-terminus L2M54_10555 PF00108 Thiolase, N-terminal domain L2M54_10555 PF02803 Thiolase, C-terminal domain L2M54_10560 PF01144 Coenzyme A transferase L2M54_10565 PF01144 Coenzyme A transferase L2M54_10570 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase L2M54_10575 PF04977 Septum formation initiator L2M54_10580 PF04239 Protein of unknown function (DUF421) L2M54_10585 PF03952 Enolase, N-terminal domain L2M54_10585 PF00113 Enolase, C-terminal TIM barrel domain L2M54_10590 PF00793 DAHP synthetase I family L2M54_10595 PF00117 Glutamine amidotransferase class-I L2M54_10595 PF06418 CTP synthase N-terminus L2M54_10625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L2M54_10625 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_10640 PF00793 DAHP synthetase I family L2M54_10645 PF02694 Uncharacterised BCR, YnfA/UPF0060 family L2M54_10650 PF00004 ATPase family associated with various cellular activities (AAA) L2M54_10650 PF10431 C-terminal, D2-small domain, of ClpB protein L2M54_10650 PF02861 Clp amino terminal domain, pathogenicity island component L2M54_10650 PF07724 AAA domain (Cdc48 subfamily) L2M54_10650 PF17871 AAA lid domain L2M54_10655 PF02617 ATP-dependent Clp protease adaptor protein ClpS L2M54_10665 PF02774 Semialdehyde dehydrogenase, dimerisation domain L2M54_10665 PF01118 Semialdehyde dehydrogenase, NAD binding domain L2M54_10685 PF00585 C-terminal regulatory domain of Threonine dehydratase L2M54_10685 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_10690 PF02080 TrkA-C domain L2M54_10690 PF02254 TrkA-N domain L2M54_10695 PF02386 Cation transport protein L2M54_10700 PF02253 Phospholipase A1 L2M54_10705 PF05193 Peptidase M16 inactive domain L2M54_10705 PF08367 Peptidase M16C associated L2M54_10705 PF00675 Insulinase (Peptidase family M16) L2M54_10710 PF00593 TonB dependent receptor L2M54_10710 PF07715 TonB-dependent Receptor Plug Domain L2M54_10715 PF00294 pfkB family carbohydrate kinase L2M54_10725 PF07290 Protein of unknown function (DUF1449) L2M54_10735 PF01654 Cytochrome bd terminal oxidase subunit I L2M54_10740 PF02322 Cytochrome bd terminal oxidase subunit II L2M54_10745 PF08173 Membrane bound YbgT-like protein L2M54_10760 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) L2M54_10770 PF00448 SRP54-type protein, GTPase domain L2M54_10770 PF02881 SRP54-type protein, helical bundle domain L2M54_10795 PF00571 CBS domain L2M54_10795 PF00478 IMP dehydrogenase / GMP reductase domain L2M54_10800 PF00202 Aminotransferase class-III L2M54_10805 PF00462 Glutaredoxin L2M54_10815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_10815 PF03466 LysR substrate binding domain L2M54_10820 PF00557 Metallopeptidase family M24 L2M54_10825 PF05525 Branched-chain amino acid transport protein L2M54_10850 PF05524 PEP-utilising enzyme, N-terminal L2M54_10850 PF00391 PEP-utilising enzyme, mobile domain L2M54_10850 PF02896 PEP-utilising enzyme, TIM barrel domain L2M54_10850 PF00381 PTS HPr component phosphorylation site L2M54_10850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 L2M54_10855 PF00294 pfkB family carbohydrate kinase L2M54_10860 PF02378 Phosphotransferase system, EIIC L2M54_10860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit L2M54_10875 PF00563 EAL domain L2M54_10875 PF00990 Diguanylate cyclase, GGDEF domain L2M54_10875 PF03707 Bacterial signalling protein N terminal repeat L2M54_10885 PF07995 Glucose / Sorbosone dehydrogenase L2M54_10890 PF02586 SOS response associated peptidase (SRAP) L2M54_10895 PF01740 STAS domain L2M54_10895 PF00916 Sulfate permease family L2M54_10900 PF00082 Subtilase family L2M54_10900 PF05922 Peptidase inhibitor I9 L2M54_10915 PF00324 Amino acid permease L2M54_10920 PF00266 Aminotransferase class-V L2M54_10925 PF01037 Lrp/AsnC ligand binding domain L2M54_10950 PF13419 Haloacid dehalogenase-like hydrolase L2M54_10955 PF01479 S4 domain L2M54_10960 PF00154 recA bacterial DNA recombination protein L2M54_10965 PF02631 RecX family L2M54_10980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 L2M54_10980 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_10985 PF07977 FabA-like domain L2M54_10990 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_10990 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD L2M54_11000 PF01103 Surface antigen L2M54_11000 PF07244 Surface antigen variable number repeat L2M54_11005 PF13180 PDZ domain L2M54_11005 PF02163 Peptidase family M50 L2M54_11005 PF17820 PDZ domain L2M54_11010 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase L2M54_11010 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain L2M54_11010 PF13288 DXP reductoisomerase C-terminal domain L2M54_11020 PF01255 Putative undecaprenyl diphosphate synthase L2M54_11025 PF01765 Ribosome recycling factor L2M54_11030 PF00696 Amino acid kinase family L2M54_11035 PF04055 Radical SAM superfamily L2M54_11035 PF18693 TRAM domain L2M54_11035 PF00919 Uncharacterized protein family UPF0004 L2M54_11040 PF00989 PAS fold L2M54_11040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_11040 PF00512 His Kinase A (phospho-acceptor) domain L2M54_11045 PF02954 Bacterial regulatory protein, Fis family L2M54_11045 PF00072 Response regulator receiver domain L2M54_11045 PF00158 Sigma-54 interaction domain L2M54_11050 PF00440 Bacterial regulatory proteins, tetR family L2M54_11055 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain L2M54_11055 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain L2M54_11065 PF02542 YgbB family L2M54_11075 PF01266 FAD dependent oxidoreductase L2M54_11095 PF10415 Fumarase C C-terminus L2M54_11095 PF00206 Lyase L2M54_11100 PF16363 GDP-mannose 4,6 dehydratase L2M54_11105 PF02635 DsrE/DsrF-like family L2M54_11125 PF00892 EamA-like transporter family L2M54_11135 PF01695 IstB-like ATP binding protein L2M54_11140 PF00665 Integrase core domain L2M54_11140 PF02796 Helix-turn-helix domain of resolvase L2M54_11150 PF01638 HxlR-like helix-turn-helix L2M54_11155 PF03454 MoeA C-terminal region (domain IV) L2M54_11155 PF00994 Probable molybdopterin binding domain L2M54_11155 PF03453 MoeA N-terminal region (domain I and II) L2M54_11160 PF01967 MoaC family L2M54_11160 PF00994 Probable molybdopterin binding domain L2M54_11165 PF02391 MoaE protein L2M54_11175 PF06463 Molybdenum Cofactor Synthesis C L2M54_11175 PF04055 Radical SAM superfamily L2M54_11180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L2M54_11180 PF00384 Molybdopterin oxidoreductase L2M54_11180 PF01568 Molydopterin dinucleotide binding domain L2M54_11185 PF12804 MobA-like NTP transferase domain L2M54_11190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain L2M54_11190 PF00384 Molybdopterin oxidoreductase L2M54_11190 PF01568 Molydopterin dinucleotide binding domain L2M54_11190 PF04324 BFD-like [2Fe-2S] binding domain L2M54_11195 PF04324 BFD-like [2Fe-2S] binding domain L2M54_11195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain L2M54_11195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain L2M54_11195 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_11195 PF18267 Rubredoxin NAD+ reductase C-terminal domain L2M54_11200 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_11200 PF18267 Rubredoxin NAD+ reductase C-terminal domain L2M54_11200 PF13806 Rieske-like [2Fe-2S] domain L2M54_11200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain L2M54_11200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain L2M54_11200 PF04324 BFD-like [2Fe-2S] binding domain L2M54_11210 PF00072 Response regulator receiver domain L2M54_11210 PF00486 Transcriptional regulatory protein, C terminal L2M54_11215 PF00005 ABC transporter L2M54_11225 PF13438 Domain of unknown function (DUF4113) L2M54_11225 PF11799 impB/mucB/samB family C-terminal domain L2M54_11225 PF00817 impB/mucB/samB family L2M54_11230 PF01220 Dehydroquinase class II L2M54_11235 PF00364 Biotin-requiring enzyme L2M54_11240 PF00289 Biotin carboxylase, N-terminal domain L2M54_11240 PF02785 Biotin carboxylase C-terminal domain L2M54_11240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2M54_11250 PF12832 MFS_1 like family L2M54_11255 PF08019 Phosphoethanolamine transferase EptA/EptB L2M54_11255 PF00884 Sulfatase L2M54_11305 PF13613 Helix-turn-helix of DDE superfamily endonuclease L2M54_11305 PF13359 DDE superfamily endonuclease L2M54_11310 PF13737 Transposase DDE domain L2M54_11440 PF01645 Conserved region in glutamate synthase L2M54_11455 PF01565 FAD binding domain L2M54_11455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain L2M54_11460 PF01451 Low molecular weight phosphotyrosine protein phosphatase L2M54_11470 PF00465 Iron-containing alcohol dehydrogenase L2M54_11475 PF03061 Thioesterase superfamily L2M54_11480 PF05506 Domain of unknown function (DUF756) L2M54_11480 PF04185 Phosphoesterase family L2M54_11485 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding L2M54_11485 PF12169 DNA polymerase III subunits gamma and tau domain III L2M54_11485 PF12170 DNA polymerase III tau subunit V interacting with alpha L2M54_11500 PF07690 Major Facilitator Superfamily L2M54_11510 PF00144 Beta-lactamase L2M54_11515 PF01575 MaoC like domain L2M54_11525 PF02803 Thiolase, C-terminal domain L2M54_11525 PF00108 Thiolase, N-terminal domain L2M54_11540 PF00923 Transaldolase/Fructose-6-phosphate aldolase L2M54_11545 PF01810 LysE type translocator L2M54_11550 PF01037 Lrp/AsnC ligand binding domain L2M54_11555 PF03594 Benzoate membrane transport protein L2M54_11560 PF02308 MgtC family L2M54_11565 PF00690 Cation transporter/ATPase, N-terminus L2M54_11565 PF00689 Cation transporting ATPase, C-terminus L2M54_11590 PF00582 Universal stress protein family L2M54_11595 PF12848 ABC transporter L2M54_11595 PF00005 ABC transporter L2M54_11615 PF07715 TonB-dependent Receptor Plug Domain L2M54_11615 PF00593 TonB dependent receptor L2M54_11645 PF00924 Mechanosensitive ion channel L2M54_11650 PF07715 TonB-dependent Receptor Plug Domain L2M54_11650 PF00593 TonB dependent receptor L2M54_11655 PF00440 Bacterial regulatory proteins, tetR family L2M54_11665 PF13276 HTH-like domain L2M54_11665 PF13333 Integrase core domain L2M54_11665 PF00665 Integrase core domain L2M54_11675 PF01037 Lrp/AsnC ligand binding domain L2M54_11680 PF01817 Chorismate mutase type II L2M54_11690 PF00106 short chain dehydrogenase L2M54_11705 PF13953 PapC C-terminal domain L2M54_11705 PF13954 PapC N-terminal domain L2M54_11705 PF00577 Outer membrane usher protein L2M54_11720 PF17432 Domain of unknown function (DUF3458_C) ARM repeats L2M54_11720 PF01433 Peptidase family M1 domain L2M54_11720 PF11940 Domain of unknown function (DUF3458) Ig-like fold L2M54_11735 PF02110 Hydroxyethylthiazole kinase family L2M54_11745 PF14493 Helix-turn-helix domain L2M54_11745 PF05970 PIF1-like helicase L2M54_11750 PF00465 Iron-containing alcohol dehydrogenase L2M54_11765 PF00171 Aldehyde dehydrogenase family L2M54_11770 PF13520 Amino acid permease L2M54_11775 PF06751 Ethanolamine ammonia lyase large subunit (EutB) L2M54_11780 PF05985 Ethanolamine ammonia-lyase light chain (EutC) L2M54_11785 PF00958 GMP synthase C terminal domain L2M54_11785 PF02540 NAD synthase L2M54_11785 PF00117 Glutamine amidotransferase class-I L2M54_11790 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain L2M54_11790 PF00749 tRNA synthetases class I (E and Q), catalytic domain L2M54_11795 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD L2M54_11800 PF00149 Calcineurin-like phosphoesterase L2M54_11810 PF00881 Nitroreductase family L2M54_11820 PF17209 Hfq protein L2M54_11830 PF08676 MutL C terminal dimerisation domain L2M54_11830 PF01119 DNA mismatch repair protein, C-terminal domain L2M54_11835 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE L2M54_11840 PF00849 RNA pseudouridylate synthase L2M54_11840 PF01479 S4 domain L2M54_11855 PF00849 RNA pseudouridylate synthase L2M54_11855 PF01479 S4 domain L2M54_11865 PF04284 Protein of unknown function (DUF441) L2M54_11870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_11870 PF03466 LysR substrate binding domain L2M54_11885 PF07690 Major Facilitator Superfamily L2M54_11890 PF00027 Cyclic nucleotide-binding domain L2M54_11890 PF00520 Ion transport protein L2M54_11900 PF11791 Aconitate B N-terminal domain L2M54_11900 PF06434 Aconitate hydratase 2 N-terminus L2M54_11900 PF00330 Aconitase family (aconitate hydratase) L2M54_11915 PF07244 Surface antigen variable number repeat L2M54_11915 PF01103 Surface antigen L2M54_11915 PF17243 POTRA domain TamA domain 1 L2M54_11920 PF07690 Major Facilitator Superfamily L2M54_11925 PF03232 Ubiquinone biosynthesis protein COQ7 L2M54_11935 PF00120 Glutamine synthetase, catalytic domain L2M54_11940 PF00072 Response regulator receiver domain L2M54_11940 PF00486 Transcriptional regulatory protein, C terminal L2M54_11945 PF13493 Domain of unknown function (DUF4118) L2M54_11945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_11945 PF00512 His Kinase A (phospho-acceptor) domain L2M54_11945 PF02702 Osmosensitive K+ channel His kinase sensor domain L2M54_11950 PF02669 K+-transporting ATPase, c chain L2M54_11960 PF03814 Potassium-transporting ATPase A subunit L2M54_11975 PF03109 ABC1 family L2M54_11980 PF00899 ThiF family L2M54_11985 PF01613 Flavin reductase like domain L2M54_11990 PF00501 AMP-binding enzyme L2M54_11990 PF13193 AMP-binding enzyme C-terminal domain L2M54_11995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_11995 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_11995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_12000 PF00106 short chain dehydrogenase L2M54_12005 PF12833 Helix-turn-helix domain L2M54_12010 PF17827 PrmC N-terminal domain L2M54_12010 PF13847 Methyltransferase domain L2M54_12015 PF03462 PCRF domain L2M54_12015 PF00472 RF-1 domain L2M54_12025 PF03466 LysR substrate binding domain L2M54_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_12040 PF00296 Luciferase-like monooxygenase L2M54_12050 PF13994 PgaD-like protein L2M54_12055 PF00535 Glycosyl transferase family 2 L2M54_12060 PF01522 Polysaccharide deacetylase L2M54_12060 PF14883 Hypothetical glycosyl hydrolase family 13 L2M54_12070 PF03618 Kinase/pyrophosphorylase L2M54_12075 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain L2M54_12075 PF02896 PEP-utilising enzyme, TIM barrel domain L2M54_12075 PF00391 PEP-utilising enzyme, mobile domain L2M54_12085 PF00116 Cytochrome C oxidase subunit II, periplasmic domain L2M54_12085 PF06481 COX Aromatic Rich Motif L2M54_12090 PF00115 Cytochrome C and Quinol oxidase polypeptide I L2M54_12095 PF00510 Cytochrome c oxidase subunit III L2M54_12100 PF03626 Prokaryotic Cytochrome C oxidase subunit IV L2M54_12105 PF01040 UbiA prenyltransferase family L2M54_12110 PF01250 Ribosomal protein S6 L2M54_12115 PF01084 Ribosomal protein S18 L2M54_12120 PF03948 Ribosomal protein L9, C-terminal domain L2M54_12120 PF01281 Ribosomal protein L9, N-terminal domain L2M54_12125 PF03796 DnaB-like helicase C terminal domain L2M54_12125 PF00772 DnaB-like helicase N terminal domain L2M54_12130 PF00842 Alanine racemase, C-terminal domain L2M54_12130 PF01168 Alanine racemase, N-terminal domain L2M54_12140 PF01841 Transglutaminase-like superfamily L2M54_12140 PF08379 Bacterial transglutaminase-like N-terminal region L2M54_12150 PF14403 Circularly permuted ATP-grasp type 2 L2M54_12160 PF13932 GidA associated domain L2M54_12160 PF01134 Glucose inhibited division protein A L2M54_12180 PF02954 Bacterial regulatory protein, Fis family L2M54_12185 PF01808 AICARFT/IMPCHase bienzyme L2M54_12185 PF02142 MGS-like domain L2M54_12190 PF02843 Phosphoribosylglycinamide synthetase, C domain L2M54_12190 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain L2M54_12190 PF02844 Phosphoribosylglycinamide synthetase, N domain L2M54_12195 PF03180 NLPA lipoprotein L2M54_12200 PF00005 ABC transporter L2M54_12200 PF09383 NIL domain L2M54_12205 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_12210 PF16123 Hydroxyacylglutathione hydrolase C-terminus L2M54_12210 PF00753 Metallo-beta-lactamase superfamily L2M54_12220 PF00375 Sodium:dicarboxylate symporter family L2M54_12240 PF07995 Glucose / Sorbosone dehydrogenase L2M54_12250 PF01177 Asp/Glu/Hydantoin racemase L2M54_12270 PF00072 Response regulator receiver domain L2M54_12270 PF00486 Transcriptional regulatory protein, C terminal L2M54_12275 PF08521 Two-component sensor kinase N-terminal L2M54_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_12275 PF00512 His Kinase A (phospho-acceptor) domain L2M54_12315 PF00512 His Kinase A (phospho-acceptor) domain L2M54_12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_12315 PF00672 HAMP domain L2M54_12320 PF00072 Response regulator receiver domain L2M54_12320 PF00486 Transcriptional regulatory protein, C terminal L2M54_12330 PF00576 HIUase/Transthyretin family L2M54_12340 PF02470 MlaD protein L2M54_12345 PF04403 Paraquat-inducible protein A L2M54_12370 PF13333 Integrase core domain L2M54_12370 PF00665 Integrase core domain L2M54_12370 PF13276 HTH-like domain L2M54_12385 PF00293 NUDIX domain L2M54_12390 PF08946 Osmosensory transporter coiled coil L2M54_12390 PF00083 Sugar (and other) transporter L2M54_12440 PF00392 Bacterial regulatory proteins, gntR family L2M54_12440 PF07729 FCD domain L2M54_12450 PF03616 Sodium/glutamate symporter L2M54_12455 PF00561 alpha/beta hydrolase fold L2M54_12480 PF04076 Bacterial OB fold (BOF) protein L2M54_12510 PF00324 Amino acid permease L2M54_12515 PF00171 Aldehyde dehydrogenase family L2M54_12520 PF00202 Aminotransferase class-III L2M54_12525 PF03466 LysR substrate binding domain L2M54_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_12575 PF00069 Protein kinase domain L2M54_12595 PF00814 Glycoprotease family L2M54_12600 PF01165 Ribosomal protein S21 L2M54_12605 PF09424 Yqey-like protein L2M54_12610 PF01435 Peptidase family M48 L2M54_12615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L2M54_12615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L2M54_12630 PF00156 Phosphoribosyl transferase domain L2M54_12635 PF02674 Colicin V production protein L2M54_12640 PF01180 Dihydroorotate dehydrogenase L2M54_12660 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus L2M54_12660 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus L2M54_12665 PF00881 Nitroreductase family L2M54_12675 PF00270 DEAD/DEAH box helicase L2M54_12675 PF00271 Helicase conserved C-terminal domain L2M54_12680 PF00313 'Cold-shock' DNA-binding domain L2M54_12695 PF04545 Sigma-70, region 4 L2M54_12695 PF00140 Sigma-70 factor, region 1.2 L2M54_12695 PF04542 Sigma-70 region 2 L2M54_12700 PF04241 Protein of unknown function (DUF423) L2M54_12710 PF05690 Thiazole biosynthesis protein ThiG L2M54_12720 PF03883 Peroxide stress protein YaaA L2M54_12730 PF00753 Metallo-beta-lactamase superfamily L2M54_12740 PF00665 Integrase core domain L2M54_12740 PF02796 Helix-turn-helix domain of resolvase L2M54_12745 PF01695 IstB-like ATP binding protein L2M54_12760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) L2M54_12765 PF01842 ACT domain L2M54_12765 PF01817 Chorismate mutase type II L2M54_12765 PF00800 Prephenate dehydratase L2M54_12775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_12775 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_12775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_12780 PF00375 Sodium:dicarboxylate symporter family L2M54_12785 PF00591 Glycosyl transferase family, a/b domain L2M54_12785 PF02885 Glycosyl transferase family, helical bundle domain L2M54_12790 PF07023 Protein of unknown function (DUF1315) L2M54_12795 PF01513 ATP-NAD kinase L2M54_12800 PF00905 Penicillin binding protein transpeptidase domain L2M54_12800 PF14814 Bifunctional transglycosylase second domain L2M54_12800 PF00912 Transglycosylase L2M54_12810 PF00293 NUDIX domain L2M54_12820 PF08521 Two-component sensor kinase N-terminal L2M54_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_12820 PF00512 His Kinase A (phospho-acceptor) domain L2M54_12825 PF00072 Response regulator receiver domain L2M54_12825 PF00486 Transcriptional regulatory protein, C terminal L2M54_12835 PF00437 Type II/IV secretion system protein L2M54_12835 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain L2M54_12845 PF01980 tRNA-methyltransferase O L2M54_12845 PF18389 TrmO C-terminal domain L2M54_12850 PF00970 Oxidoreductase FAD-binding domain L2M54_12850 PF00175 Oxidoreductase NAD-binding domain L2M54_12855 PF02567 Phenazine biosynthesis-like protein L2M54_12865 PF01136 Peptidase family U32 L2M54_12865 PF16325 Peptidase family U32 C-terminal domain L2M54_12870 PF00037 4Fe-4S binding domain L2M54_12875 PF00893 Small Multidrug Resistance protein L2M54_12880 PF00005 ABC transporter L2M54_12885 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_12890 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_12895 PF00497 Bacterial extracellular solute-binding proteins, family 3 L2M54_12900 PF03466 LysR substrate binding domain L2M54_12900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_12905 PF13533 Biotin-lipoyl like L2M54_12910 PF00873 AcrB/AcrD/AcrF family L2M54_12915 PF02321 Outer membrane efflux protein L2M54_12920 PF00464 Serine hydroxymethyltransferase L2M54_12950 PF00005 ABC transporter L2M54_12955 PF01061 ABC-2 type transporter L2M54_12960 PF14489 QueF-like protein L2M54_12960 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term L2M54_12970 PF01098 Cell cycle protein L2M54_12975 PF13406 Transglycosylase SLT domain L2M54_12980 PF05036 Sporulation related domain L2M54_12980 PF03330 Lytic transglycolase L2M54_13000 PF12833 Helix-turn-helix domain L2M54_13010 PF00889 Elongation factor TS L2M54_13015 PF00318 Ribosomal protein S2 L2M54_13020 PF00557 Metallopeptidase family M24 L2M54_13030 PF07690 Major Facilitator Superfamily L2M54_13040 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_13040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L2M54_13045 PF04055 Radical SAM superfamily L2M54_13050 PF09317 Domain of unknown function (DUF1974) L2M54_13050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_13050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_13065 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain L2M54_13065 PF05221 S-adenosyl-L-homocysteine hydrolase L2M54_13070 PF02219 Methylenetetrahydrofolate reductase L2M54_13075 PF04452 RNA methyltransferase L2M54_13080 PF00990 Diguanylate cyclase, GGDEF domain L2M54_13080 PF03707 Bacterial signalling protein N terminal repeat L2M54_13080 PF00563 EAL domain L2M54_13085 PF00390 Malic enzyme, N-terminal domain L2M54_13085 PF03949 Malic enzyme, NAD binding domain L2M54_13085 PF01515 Phosphate acetyl/butaryl transferase L2M54_13090 PF01743 Poly A polymerase head domain L2M54_13090 PF12627 Probable RNA and SrmB- binding site of polymerase A L2M54_13095 PF13180 PDZ domain L2M54_13100 PF01784 NIF3 (NGG1p interacting factor 3) L2M54_13105 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain L2M54_13105 PF02777 Iron/manganese superoxide dismutases, C-terminal domain L2M54_13140 PF01040 UbiA prenyltransferase family L2M54_13145 PF04345 Chorismate lyase L2M54_13150 PF03951 Glutamine synthetase, beta-Grasp domain L2M54_13150 PF00120 Glutamine synthetase, catalytic domain L2M54_13155 PF00854 POT family L2M54_13165 PF00117 Glutamine amidotransferase class-I L2M54_13170 PF11838 ERAP1-like C-terminal domain L2M54_13170 PF01433 Peptidase family M1 domain L2M54_13175 PF07715 TonB-dependent Receptor Plug Domain L2M54_13175 PF00593 TonB dependent receptor L2M54_13180 PF02885 Glycosyl transferase family, helical bundle domain L2M54_13180 PF00591 Glycosyl transferase family, a/b domain L2M54_13185 PF00218 Indole-3-glycerol phosphate synthase L2M54_13200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase L2M54_13200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain L2M54_13205 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_13205 PF01799 [2Fe-2S] binding domain L2M54_13210 PF01227 GTP cyclohydrolase I L2M54_13215 PF00144 Beta-lactamase L2M54_13230 PF05675 Protein of unknown function (DUF817) L2M54_13235 PF01208 Uroporphyrinogen decarboxylase (URO-D) L2M54_13245 PF00425 chorismate binding enzyme L2M54_13250 PF17837 4'-phosphopantetheinyl transferase N-terminal domain L2M54_13250 PF01648 4'-phosphopantetheinyl transferase superfamily L2M54_13255 PF00975 Thioesterase domain L2M54_13260 PF00005 ABC transporter L2M54_13265 PF00005 ABC transporter L2M54_13265 PF00664 ABC transporter transmembrane region L2M54_13275 PF00282 Pyridoxal-dependent decarboxylase conserved domain L2M54_13280 PF00857 Isochorismatase family L2M54_13280 PF00550 Phosphopantetheine attachment site L2M54_13285 PF00501 AMP-binding enzyme L2M54_13285 PF13193 AMP-binding enzyme C-terminal domain L2M54_13290 PF00501 AMP-binding enzyme L2M54_13290 PF00668 Condensation domain L2M54_13290 PF00550 Phosphopantetheine attachment site L2M54_13295 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) L2M54_13300 PF00593 TonB dependent receptor L2M54_13300 PF07715 TonB-dependent Receptor Plug Domain L2M54_13305 PF01497 Periplasmic binding protein L2M54_13310 PF00005 ABC transporter L2M54_13315 PF01032 FecCD transport family L2M54_13325 PF13193 AMP-binding enzyme C-terminal domain L2M54_13325 PF00975 Thioesterase domain L2M54_13325 PF00550 Phosphopantetheine attachment site L2M54_13325 PF00668 Condensation domain L2M54_13325 PF00501 AMP-binding enzyme L2M54_13330 PF00501 AMP-binding enzyme L2M54_13330 PF00668 Condensation domain L2M54_13330 PF13193 AMP-binding enzyme C-terminal domain L2M54_13330 PF00550 Phosphopantetheine attachment site L2M54_13340 PF13309 HTH domain L2M54_13340 PF08348 YheO-like PAS domain L2M54_13345 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_13350 PF02678 Pirin L2M54_13350 PF17954 Quercetinase C-terminal cupin domain L2M54_13410 PF02796 Helix-turn-helix domain of resolvase L2M54_13410 PF00665 Integrase core domain L2M54_13415 PF01695 IstB-like ATP binding protein L2M54_13475 PF13356 Arm DNA-binding domain L2M54_13475 PF00589 Phage integrase family L2M54_13485 PF04328 Selenoprotein, putative L2M54_13490 PF02554 Carbon starvation protein CstA L2M54_13490 PF13722 5TM C-terminal transporter carbon starvation CstA L2M54_13495 PF08207 Elongation factor P (EF-P) KOW-like domain L2M54_13495 PF09285 Elongation factor P, C-terminal L2M54_13495 PF01132 Elongation factor P (EF-P) OB domain L2M54_13500 PF04055 Radical SAM superfamily L2M54_13510 PF12792 CSS motif domain associated with EAL L2M54_13510 PF00563 EAL domain L2M54_13515 PF01197 Ribosomal protein L31 L2M54_13520 PF13593 SBF-like CPA transporter family (DUF4137) L2M54_13525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L2M54_13530 PF07690 Major Facilitator Superfamily L2M54_13535 PF13654 AAA domain L2M54_13535 PF05362 Lon protease (S16) C-terminal proteolytic domain L2M54_13540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_13540 PF03466 LysR substrate binding domain L2M54_13545 PF01551 Peptidase family M23 L2M54_13545 PF01476 LysM domain L2M54_13550 PF01975 Survival protein SurE L2M54_13565 PF07943 Penicillin-binding protein 5, C-terminal domain L2M54_13565 PF00768 D-alanyl-D-alanine carboxypeptidase L2M54_13570 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_13575 PF13344 Haloacid dehalogenase-like hydrolase L2M54_13575 PF00293 NUDIX domain L2M54_13585 PF04356 Protein of unknown function (DUF489) L2M54_13590 PF08328 Adenylosuccinate lyase C-terminal L2M54_13590 PF00206 Lyase L2M54_13605 PF08496 Peptidase family S49 N-terminal L2M54_13605 PF01343 Peptidase family S49 L2M54_13610 PF00005 ABC transporter L2M54_13615 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_13620 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_13625 PF12849 PBP superfamily domain L2M54_13630 PF00324 Amino acid permease L2M54_13635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain L2M54_13635 PF00205 Thiamine pyrophosphate enzyme, central domain L2M54_13635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain L2M54_13640 PF01037 Lrp/AsnC ligand binding domain L2M54_13645 PF00171 Aldehyde dehydrogenase family L2M54_13650 PF00282 Pyridoxal-dependent decarboxylase conserved domain L2M54_13655 PF00202 Aminotransferase class-III L2M54_13680 PF00487 Fatty acid desaturase L2M54_13685 PF00175 Oxidoreductase NAD-binding domain L2M54_13685 PF00111 2Fe-2S iron-sulfur cluster binding domain L2M54_13685 PF00970 Oxidoreductase FAD-binding domain L2M54_13690 PF00440 Bacterial regulatory proteins, tetR family L2M54_13700 PF00271 Helicase conserved C-terminal domain L2M54_13700 PF12137 RNA polymerase recycling family C-terminal L2M54_13700 PF00176 SNF2 family N-terminal domain L2M54_13700 PF18339 RapA N-terminal Tudor like domain 1 L2M54_13700 PF18337 RapA N-terminal Tudor like domain L2M54_13705 PF00849 RNA pseudouridylate synthase L2M54_13715 PF00202 Aminotransferase class-III L2M54_13720 PF02581 Thiamine monophosphate synthase L2M54_13745 PF05193 Peptidase M16 inactive domain L2M54_13745 PF00675 Insulinase (Peptidase family M16) L2M54_13750 PF02567 Phenazine biosynthesis-like protein L2M54_13755 PF00375 Sodium:dicarboxylate symporter family L2M54_13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_13760 PF03466 LysR substrate binding domain L2M54_13765 PF06779 Uncharacterised MFS-type transporter YbfB L2M54_13785 PF00180 Isocitrate/isopropylmalate dehydrogenase L2M54_13790 PF00849 RNA pseudouridylate synthase L2M54_13795 PF03971 Monomeric isocitrate dehydrogenase L2M54_13805 PF07943 Penicillin-binding protein 5, C-terminal domain L2M54_13805 PF00768 D-alanyl-D-alanine carboxypeptidase L2M54_13810 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_13815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase L2M54_13820 PF00875 DNA photolyase L2M54_13820 PF03441 FAD binding domain of DNA photolyase L2M54_13850 PF02350 UDP-N-acetylglucosamine 2-epimerase L2M54_13865 PF03060 Nitronate monooxygenase L2M54_13870 PF01207 Dihydrouridine synthase (Dus) L2M54_13875 PF07759 Protein of unknown function (DUF1615) L2M54_13885 PF00696 Amino acid kinase family L2M54_13885 PF01472 PUA domain L2M54_13905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain L2M54_13905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain L2M54_13910 PF00892 EamA-like transporter family L2M54_13920 PF04851 Type III restriction enzyme, res subunit L2M54_13920 PF02151 UvrB/uvrC motif L2M54_13920 PF12344 Ultra-violet resistance protein B L2M54_13920 PF17757 UvrB interaction domain L2M54_13920 PF00271 Helicase conserved C-terminal domain L2M54_13930 PF00990 Diguanylate cyclase, GGDEF domain L2M54_13930 PF17151 Periplasmic sensor domain L2M54_13940 PF00155 Aminotransferase class I and II L2M54_13970 PF00106 short chain dehydrogenase L2M54_13975 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) L2M54_13980 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ L2M54_13985 PF02565 Recombination protein O C terminal L2M54_13985 PF11967 Recombination protein O N terminal L2M54_13995 PF01926 50S ribosome-binding GTPase L2M54_13995 PF07650 KH domain L2M54_14000 PF00035 Double-stranded RNA binding motif L2M54_14000 PF14622 Ribonuclease-III-like L2M54_14010 PF10502 Signal peptidase, peptidase S26 L2M54_14015 PF00009 Elongation factor Tu GTP binding domain L2M54_14015 PF03144 Elongation factor Tu domain 2 L2M54_14015 PF06421 GTP-binding protein LepA C-terminus L2M54_14015 PF00679 Elongation factor G C-terminus L2M54_14025 PF13180 PDZ domain L2M54_14030 PF02910 Fumarate reductase flavoprotein C-term L2M54_14030 PF00890 FAD binding domain L2M54_14040 PF02223 Thymidylate kinase L2M54_14045 PF02618 YceG-like family L2M54_14050 PF01063 Amino-transferase class IV L2M54_14065 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_14070 PF00528 Binding-protein-dependent transport system inner membrane component L2M54_14075 PF00005 ABC transporter L2M54_14075 PF12857 TOBE-like domain L2M54_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_14080 PF03466 LysR substrate binding domain L2M54_14090 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_14090 PF14602 Hexapeptide repeat of succinyl-transferase L2M54_14090 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal L2M54_14100 PF06508 Queuosine biosynthesis protein QueC L2M54_14115 PF00578 AhpC/TSA family L2M54_14125 PF00293 NUDIX domain L2M54_14125 PF01467 Cytidylyltransferase-like L2M54_14130 PF00378 Enoyl-CoA hydratase/isomerase L2M54_14135 PF01784 NIF3 (NGG1p interacting factor 3) L2M54_14140 PF07690 Major Facilitator Superfamily L2M54_14145 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal L2M54_14145 PF02769 AIR synthase related protein, C-terminal domain L2M54_14145 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain L2M54_14150 PF01966 HD domain L2M54_14155 PF07499 RuvA, C-terminal domain L2M54_14155 PF01330 RuvA N terminal domain L2M54_14160 PF05491 RuvB C-terminal winged helix domain L2M54_14160 PF05496 Holliday junction DNA helicase RuvB P-loop domain L2M54_14160 PF17864 RuvB AAA lid domain L2M54_14170 PF03061 Thioesterase superfamily L2M54_14175 PF01618 MotA/TolQ/ExbB proton channel family L2M54_14180 PF02472 Biopolymer transport protein ExbD/TolR L2M54_14190 PF04052 TolB amino-terminal domain L2M54_14190 PF07676 WD40-like Beta Propeller Repeat L2M54_14195 PF00691 OmpA family L2M54_14205 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain L2M54_14210 PF08032 RNA 2'-O ribose methyltransferase substrate binding L2M54_14210 PF00588 SpoU rRNA Methylase family L2M54_14240 PF11638 DnaA N-terminal domain L2M54_14240 PF08299 Bacterial dnaA protein helix-turn-helix L2M54_14240 PF00308 Bacterial dnaA protein L2M54_14245 PF01594 AI-2E family transporter L2M54_14250 PF02769 AIR synthase related protein, C-terminal domain L2M54_14250 PF00586 AIR synthase related protein, N-terminal domain L2M54_14255 PF00551 Formyl transferase L2M54_14260 PF12697 Alpha/beta hydrolase family L2M54_14265 PF01343 Peptidase family S49 L2M54_14265 PF06965 Na+/H+ antiporter 1 L2M54_14280 PF00005 ABC transporter L2M54_14285 PF12704 MacB-like periplasmic core domain L2M54_14285 PF02687 FtsX-like permease family L2M54_14295 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 L2M54_14310 PF00266 Aminotransferase class-V L2M54_14320 PF13533 Biotin-lipoyl like L2M54_14340 PF00535 Glycosyl transferase family 2 L2M54_14355 PF03989 DNA gyrase C-terminal domain, beta-propeller L2M54_14355 PF00521 DNA gyrase/topoisomerase IV, subunit A L2M54_14360 PF01012 Electron transfer flavoprotein domain L2M54_14360 PF00766 Electron transfer flavoprotein FAD-binding domain L2M54_14365 PF01012 Electron transfer flavoprotein domain L2M54_14370 PF00589 Phage integrase family L2M54_14370 PF02899 Phage integrase, N-terminal SAM-like domain L2M54_14375 PF01810 LysE type translocator L2M54_14380 PF00561 alpha/beta hydrolase fold L2M54_14385 PF01678 Diaminopimelate epimerase L2M54_14390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain L2M54_14390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain L2M54_14400 PF00324 Amino acid permease L2M54_14405 PF18073 Rubredoxin metal binding domain L2M54_14415 PF00152 tRNA synthetases class II (D, K and N) L2M54_14420 PF11890 Domain of unknown function (DUF3410) L2M54_14420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L2M54_14420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L2M54_14425 PF06803 Protein of unknown function (DUF1232) L2M54_14430 PF02634 FdhD/NarQ family L2M54_14435 PF00384 Molybdopterin oxidoreductase L2M54_14440 PF02595 Glycerate kinase family L2M54_14455 PF00881 Nitroreductase family L2M54_14470 PF13333 Integrase core domain L2M54_14470 PF00665 Integrase core domain L2M54_14470 PF13276 HTH-like domain L2M54_14500 PF09857 Putative toxin of bacterial toxin-antitoxin pair L2M54_14510 PF00975 Thioesterase domain L2M54_14510 PF00550 Phosphopantetheine attachment site L2M54_14510 PF13193 AMP-binding enzyme C-terminal domain L2M54_14510 PF00501 AMP-binding enzyme L2M54_14510 PF00668 Condensation domain L2M54_14525 PF03449 Transcription elongation factor, N-terminal L2M54_14525 PF01272 Transcription elongation factor, GreA/GreB, C-term L2M54_14530 PF00497 Bacterial extracellular solute-binding proteins, family 3 L2M54_14530 PF01464 Transglycosylase SLT domain L2M54_14540 PF01171 PP-loop family L2M54_14545 PF01464 Transglycosylase SLT domain L2M54_14550 PF01435 Peptidase family M48 L2M54_14560 PF00873 AcrB/AcrD/AcrF family L2M54_14565 PF03009 Glycerophosphoryl diester phosphodiesterase family L2M54_14570 PF00753 Metallo-beta-lactamase superfamily L2M54_14575 PF01219 Prokaryotic diacylglycerol kinase L2M54_14580 PF00118 TCP-1/cpn60 chaperonin family L2M54_14585 PF00166 Chaperonin 10 Kd subunit L2M54_14590 PF00149 Calcineurin-like phosphoesterase L2M54_14595 PF00781 Diacylglycerol kinase catalytic domain L2M54_14600 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain L2M54_14600 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain L2M54_14605 PF01266 FAD dependent oxidoreductase L2M54_14605 PF16901 C-terminal domain of alpha-glycerophosphate oxidase L2M54_14610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain L2M54_14610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain L2M54_14615 PF00083 Sugar (and other) transporter L2M54_14630 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain L2M54_14630 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain L2M54_14645 PF16655 PhoD-like phosphatase, N-terminal domain L2M54_14645 PF09423 PhoD-like phosphatase L2M54_14665 PF00809 Pterin binding enzyme L2M54_14670 PF17862 AAA+ lid domain L2M54_14670 PF06480 FtsH Extracellular L2M54_14670 PF01434 Peptidase family M41 L2M54_14670 PF00004 ATPase family associated with various cellular activities (AAA) L2M54_14675 PF01728 FtsJ-like methyltransferase L2M54_14680 PF01985 CRS1 / YhbY (CRM) domain L2M54_14695 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain L2M54_14695 PF00117 Glutamine amidotransferase class-I L2M54_14700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2M54_14700 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain L2M54_14700 PF02142 MGS-like domain L2M54_14705 PF01272 Transcription elongation factor, GreA/GreB, C-term L2M54_14705 PF03449 Transcription elongation factor, N-terminal L2M54_14710 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_14715 PF00582 Universal stress protein family L2M54_14720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain L2M54_14730 PF09587 Bacterial capsule synthesis protein PGA_cap L2M54_14740 PF00872 Transposase, Mutator family L2M54_14750 PF00999 Sodium/hydrogen exchanger family L2M54_14755 PF04228 Putative neutral zinc metallopeptidase L2M54_14760 PF05661 Protein of unknown function (DUF808) L2M54_14765 PF00579 tRNA synthetases class I (W and Y) L2M54_14770 PF02629 CoA binding domain L2M54_14770 PF00549 CoA-ligase L2M54_14775 PF08442 ATP-grasp domain L2M54_14775 PF00549 CoA-ligase L2M54_14780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L2M54_14780 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_14785 PF02817 e3 binding domain L2M54_14785 PF00364 Biotin-requiring enzyme L2M54_14785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L2M54_14790 PF16078 2-oxoglutarate dehydrogenase N-terminus L2M54_14790 PF00676 Dehydrogenase E1 component L2M54_14790 PF16870 2-oxoglutarate dehydrogenase C-terminal L2M54_14790 PF02779 Transketolase, pyrimidine binding domain L2M54_14805 PF13085 2Fe-2S iron-sulfur cluster binding domain L2M54_14810 PF00890 FAD binding domain L2M54_14810 PF02910 Fumarate reductase flavoprotein C-term L2M54_14815 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L2M54_14820 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit L2M54_14825 PF00285 Citrate synthase, C-terminal domain L2M54_14835 PF17773 UPF0176 acylphosphatase like domain L2M54_14835 PF00581 Rhodanese-like domain L2M54_14850 PF04546 Sigma-70, non-essential region L2M54_14850 PF00140 Sigma-70 factor, region 1.2 L2M54_14850 PF04539 Sigma-70 region 3 L2M54_14850 PF04545 Sigma-70, region 4 L2M54_14850 PF04542 Sigma-70 region 2 L2M54_14850 PF03979 Sigma-70 factor, region 1.1 L2M54_14855 PF04359 Protein of unknown function (DUF493) L2M54_14860 PF03099 Biotin/lipoate A/B protein ligase family L2M54_14870 PF00465 Iron-containing alcohol dehydrogenase L2M54_14875 PF13520 Amino acid permease L2M54_14880 PF03358 NADPH-dependent FMN reductase L2M54_14885 PF01638 HxlR-like helix-turn-helix L2M54_14890 PF00588 SpoU rRNA Methylase family L2M54_14895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases L2M54_14895 PF10414 Sirohaem synthase dimerisation region L2M54_14895 PF14824 Sirohaem biosynthesis protein central L2M54_14900 PF02403 Seryl-tRNA synthetase N-terminal domain L2M54_14900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L2M54_14910 PF03548 Outer membrane lipoprotein carrier protein LolA L2M54_14915 PF01016 Ribosomal L27 protein L2M54_14920 PF00829 Ribosomal prokaryotic L21 protein L2M54_14930 PF00348 Polyprenyl synthetase L2M54_14940 PF01569 PAP2 superfamily L2M54_14945 PF00529 HlyD membrane-fusion protein of T1SS L2M54_14945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2M54_14950 PF00873 AcrB/AcrD/AcrF family L2M54_14955 PF02321 Outer membrane efflux protein L2M54_14960 PF01906 Putative heavy-metal-binding L2M54_14985 PF00133 tRNA synthetases class I (I, L, M and V) L2M54_14985 PF08264 Anticodon-binding domain of tRNA L2M54_14985 PF10458 Valyl tRNA synthetase tRNA binding arm L2M54_14990 PF01119 DNA mismatch repair protein, C-terminal domain L2M54_14990 PF08676 MutL C terminal dimerisation domain L2M54_15005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_15005 PF03466 LysR substrate binding domain L2M54_15010 PF00909 Ammonium Transporter Family L2M54_15020 PF08521 Two-component sensor kinase N-terminal L2M54_15020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_15020 PF00512 His Kinase A (phospho-acceptor) domain L2M54_15025 PF00072 Response regulator receiver domain L2M54_15025 PF00486 Transcriptional regulatory protein, C terminal L2M54_15030 PF08019 Phosphoethanolamine transferase EptA/EptB L2M54_15030 PF00884 Sulfatase L2M54_15050 PF01734 Patatin-like phospholipase L2M54_15060 PF01145 SPFH domain / Band 7 family L2M54_15065 PF04237 YjbR L2M54_15070 PF00348 Polyprenyl synthetase L2M54_15075 PF04303 PrpF protein L2M54_15080 PF00324 Amino acid permease L2M54_15090 PF01965 DJ-1/PfpI family L2M54_15095 PF00550 Phosphopantetheine attachment site L2M54_15095 PF08990 Erythronolide synthase docking L2M54_15095 PF09277 Erythronolide synthase, docking L2M54_15095 PF16197 Ketoacyl-synthetase C-terminal extension L2M54_15095 PF08659 KR domain L2M54_15095 PF02801 Beta-ketoacyl synthase, C-terminal domain L2M54_15095 PF00109 Beta-ketoacyl synthase, N-terminal domain L2M54_15095 PF14765 Polyketide synthase dehydratase L2M54_15095 PF00698 Acyl transferase domain L2M54_15095 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_15100 PF06719 AraC-type transcriptional regulator N-terminus L2M54_15100 PF12833 Helix-turn-helix domain L2M54_15105 PF02673 Bacitracin resistance protein BacA L2M54_15125 PF02525 Flavodoxin-like fold L2M54_15140 PF01507 Phosphoadenosine phosphosulfate reductase family L2M54_15145 PF06974 Protein of unknown function (DUF1298) L2M54_15145 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain L2M54_15155 PF10150 Ribonuclease E/G family L2M54_15155 PF00575 S1 RNA binding domain L2M54_15160 PF02545 Maf-like protein L2M54_15165 PF04093 rod shape-determining protein MreD L2M54_15170 PF04085 rod shape-determining protein MreC L2M54_15180 PF02686 Glu-tRNAGln amidotransferase C subunit L2M54_15185 PF01425 Amidase L2M54_15190 PF02934 GatB/GatE catalytic domain L2M54_15190 PF02637 GatB domain L2M54_15215 PF01431 Peptidase family M13 L2M54_15215 PF05649 Peptidase family M13 L2M54_15220 PF05992 SbmA/BacA-like family L2M54_15225 PF13291 ACT domain L2M54_15225 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_15230 PF01734 Patatin-like phospholipase L2M54_15235 PF01235 Sodium:alanine symporter family L2M54_15260 PF12805 FUSC-like inner membrane protein yccS L2M54_15270 PF00667 FAD binding domain L2M54_15270 PF00258 Flavodoxin L2M54_15270 PF00175 Oxidoreductase NAD-binding domain L2M54_15310 PF17969 L,D-transpeptidase C-terminal domain L2M54_15310 PF03734 L,D-transpeptidase catalytic domain L2M54_15315 PF04304 Protein of unknown function (DUF454) L2M54_15325 PF08085 Entericidin EcnA/B family L2M54_15330 PF01546 Peptidase family M20/M25/M40 L2M54_15330 PF07687 Peptidase dimerisation domain L2M54_15350 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term L2M54_15350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain L2M54_15355 PF01584 CheW-like domain L2M54_15360 PF00072 Response regulator receiver domain L2M54_15365 PF00072 Response regulator receiver domain L2M54_15380 PF00873 AcrB/AcrD/AcrF family L2M54_15385 PF04073 Aminoacyl-tRNA editing domain L2M54_15385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) L2M54_15385 PF03129 Anticodon binding domain L2M54_15390 PF07411 Domain of unknown function (DUF1508) L2M54_15395 PF08274 PhnA Zinc-Ribbon L2M54_15395 PF03831 PhnA domain L2M54_15400 PF04343 Protein of unknown function, DUF488 L2M54_15410 PF01571 Aminomethyltransferase folate-binding domain L2M54_15415 PF13098 Thioredoxin-like domain L2M54_15415 PF10411 Disulfide bond isomerase protein N-terminus L2M54_15425 PF03547 Membrane transport protein L2M54_15430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L2M54_15435 PF07715 TonB-dependent Receptor Plug Domain L2M54_15435 PF00593 TonB dependent receptor L2M54_15440 PF02245 Methylpurine-DNA glycosylase (MPG) L2M54_15445 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain L2M54_15445 PF06827 Zinc finger found in FPG and IleRS L2M54_15445 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain L2M54_15460 PF01741 Large-conductance mechanosensitive channel, MscL L2M54_15465 PF00679 Elongation factor G C-terminus L2M54_15465 PF03144 Elongation factor Tu domain 2 L2M54_15465 PF00009 Elongation factor Tu GTP binding domain L2M54_15475 PF08468 Methyltransferase small domain N-terminal L2M54_15475 PF05175 Methyltransferase small domain L2M54_15480 PF00324 Amino acid permease L2M54_15485 PF01139 tRNA-splicing ligase RtcB L2M54_15495 PF00691 OmpA family L2M54_15495 PF13505 Outer membrane protein beta-barrel domain L2M54_15505 PF00108 Thiolase, N-terminal domain L2M54_15505 PF02803 Thiolase, C-terminal domain L2M54_15515 PF00893 Small Multidrug Resistance protein L2M54_15525 PF01077 Nitrite and sulphite reductase 4Fe-4S domain L2M54_15525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain L2M54_15530 PF01011 PQQ enzyme repeat L2M54_15535 PF04966 Carbohydrate-selective porin, OprB family L2M54_15540 PF02515 CoA-transferase family III L2M54_15545 PF12833 Helix-turn-helix domain L2M54_15545 PF02311 AraC-like ligand binding domain L2M54_15550 PF02803 Thiolase, C-terminal domain L2M54_15550 PF00108 Thiolase, N-terminal domain L2M54_15555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain L2M54_15555 PF00378 Enoyl-CoA hydratase/isomerase L2M54_15555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain L2M54_15580 PF03006 Haemolysin-III related L2M54_15585 PF07690 Major Facilitator Superfamily L2M54_15585 PF00083 Sugar (and other) transporter L2M54_15595 PF02810 SEC-C motif L2M54_15595 PF07517 SecA DEAD-like domain L2M54_15595 PF01043 SecA preprotein cross-linking domain L2M54_15595 PF07516 SecA Wing and Scaffold domain L2M54_15600 PF00578 AhpC/TSA family L2M54_15600 PF10417 C-terminal domain of 1-Cys peroxiredoxin L2M54_15605 PF00753 Metallo-beta-lactamase superfamily L2M54_15620 PF08245 Mur ligase middle domain L2M54_15620 PF02875 Mur ligase family, glutamate ligase domain L2M54_15625 PF01039 Carboxyl transferase domain L2M54_15630 PF00290 Tryptophan synthase alpha chain L2M54_15655 PF00291 Pyridoxal-phosphate dependent enzyme L2M54_15660 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase L2M54_15665 PF07715 TonB-dependent Receptor Plug Domain L2M54_15665 PF00593 TonB dependent receptor L2M54_15670 PF01923 Cobalamin adenosyltransferase L2M54_15690 PF02696 Uncharacterized ACR, YdiU/UPF0061 family L2M54_15695 PF00072 Response regulator receiver domain L2M54_15695 PF00486 Transcriptional regulatory protein, C terminal L2M54_15700 PF00512 His Kinase A (phospho-acceptor) domain L2M54_15700 PF00672 HAMP domain L2M54_15700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_15710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_15710 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_15710 PF12806 Acetyl-CoA dehydrogenase C-terminal like L2M54_15710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_15715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_15715 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_15715 PF12806 Acetyl-CoA dehydrogenase C-terminal like L2M54_15715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_15720 PF06146 Phosphate-starvation-inducible E L2M54_15740 PF00593 TonB dependent receptor L2M54_15740 PF07715 TonB-dependent Receptor Plug Domain L2M54_15750 PF02938 GAD domain L2M54_15750 PF00152 tRNA synthetases class II (D, K and N) L2M54_15750 PF01336 OB-fold nucleic acid binding domain L2M54_15765 PF00535 Glycosyl transferase family 2 L2M54_15770 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase L2M54_15775 PF00483 Nucleotidyl transferase L2M54_15780 PF04321 RmlD substrate binding domain L2M54_15785 PF16363 GDP-mannose 4,6 dehydratase L2M54_15795 PF00534 Glycosyl transferases group 1 L2M54_15795 PF13439 Glycosyltransferase Family 4 L2M54_15800 PF01522 Polysaccharide deacetylase L2M54_15810 PF01063 Amino-transferase class IV L2M54_15815 PF08335 GlnD PII-uridylyltransferase L2M54_15815 PF03710 Glutamate-ammonia ligase adenylyltransferase L2M54_15820 PF00512 His Kinase A (phospho-acceptor) domain L2M54_15820 PF07689 KaiB domain L2M54_15820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_15830 PF02547 Queuosine biosynthesis protein L2M54_15845 PF01702 Queuine tRNA-ribosyltransferase L2M54_15850 PF02699 Preprotein translocase subunit L2M54_15855 PF13721 SecD export protein N-terminal TM region L2M54_15855 PF02355 Protein export membrane protein L2M54_15855 PF07549 SecD/SecF GG Motif L2M54_15860 PF07549 SecD/SecF GG Motif L2M54_15860 PF02355 Protein export membrane protein L2M54_15870 PF04127 DNA / pantothenate metabolism flavoprotein L2M54_15870 PF02441 Flavoprotein L2M54_15875 PF04002 RadC-like JAB domain L2M54_15880 PF01062 Bestrophin, RFP-TM, chloride channel L2M54_15885 PF02811 PHP domain L2M54_15890 PF04279 Intracellular septation protein A L2M54_15895 PF03795 YCII-related domain L2M54_15915 PF04461 Protein of unknown function (DUF520) L2M54_15925 PF03061 Thioesterase superfamily L2M54_15930 PF00085 Thioredoxin L2M54_15940 PF04273 Putative phosphatase (DUF442) L2M54_15940 PF00753 Metallo-beta-lactamase superfamily L2M54_15950 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_15950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain L2M54_15985 PF17152 Periplasmic sensor domain L2M54_15985 PF00990 Diguanylate cyclase, GGDEF domain L2M54_15990 PF00691 OmpA family L2M54_15990 PF01389 OmpA-like transmembrane domain L2M54_15995 PF00149 Calcineurin-like phosphoesterase L2M54_15995 PF10518 TAT (twin-arginine translocation) pathway signal sequence L2M54_16000 PF13091 PLD-like domain L2M54_16010 PF16360 GTP-binding GTPase Middle Region L2M54_16010 PF13167 GTP-binding GTPase N-terminal L2M54_16010 PF01926 50S ribosome-binding GTPase L2M54_16030 PF00149 Calcineurin-like phosphoesterase L2M54_16035 PF00398 Ribosomal RNA adenine dimethylase L2M54_16045 PF00572 Ribosomal protein L13 L2M54_16050 PF00380 Ribosomal protein S9/S16 L2M54_16055 PF00043 Glutathione S-transferase, C-terminal domain L2M54_16055 PF13417 Glutathione S-transferase, N-terminal domain L2M54_16060 PF04386 Stringent starvation protein B L2M54_16070 PF02785 Biotin carboxylase C-terminal domain L2M54_16070 PF00289 Biotin carboxylase, N-terminal domain L2M54_16070 PF00364 Biotin-requiring enzyme L2M54_16070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain L2M54_16080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_16080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_16080 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_16100 PF00440 Bacterial regulatory proteins, tetR family L2M54_16100 PF17932 Tetracyclin repressor-like, C-terminal domain L2M54_16105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_16105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_16105 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_16150 PF01066 CDP-alcohol phosphatidyltransferase L2M54_16155 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ L2M54_16175 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain L2M54_16175 PF00056 lactate/malate dehydrogenase, NAD binding domain L2M54_16185 PF10145 Phage-related minor tail protein L2M54_16185 PF01551 Peptidase family M23 L2M54_16185 PF01464 Transglycosylase SLT domain L2M54_16190 PF04055 Radical SAM superfamily L2M54_16190 PF01938 TRAM domain L2M54_16190 PF00919 Uncharacterized protein family UPF0004 L2M54_16195 PF00919 Uncharacterized protein family UPF0004 L2M54_16195 PF04055 Radical SAM superfamily L2M54_16195 PF01938 TRAM domain L2M54_16200 PF02562 PhoH-like protein L2M54_16205 PF02130 Uncharacterized protein family UPF0054 L2M54_16230 PF03358 NADPH-dependent FMN reductase L2M54_16235 PF03631 Virulence factor BrkB L2M54_16240 PF00892 EamA-like transporter family L2M54_16245 PF12833 Helix-turn-helix domain L2M54_16250 PF01557 Fumarylacetoacetate (FAA) hydrolase family L2M54_16295 PF00575 S1 RNA binding domain L2M54_16295 PF17876 Cold shock domain L2M54_16295 PF08461 Ribonuclease R winged-helix domain L2M54_16295 PF08206 Ribonuclease B OB domain L2M54_16295 PF00773 RNB domain L2M54_16300 PF01432 Peptidase family M3 L2M54_16305 PF09526 Probable metal-binding protein (DUF2387) L2M54_16335 PF03937 Flavinator of succinate dehydrogenase L2M54_16340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_16340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_16340 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_16345 PF00743 Flavin-binding monooxygenase-like L2M54_16350 PF01196 Ribosomal protein L17 L2M54_16355 PF01000 RNA polymerase Rpb3/RpoA insert domain L2M54_16355 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain L2M54_16355 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain L2M54_16360 PF01479 S4 domain L2M54_16360 PF00163 Ribosomal protein S4/S9 N-terminal domain L2M54_16365 PF00411 Ribosomal protein S11 L2M54_16370 PF00416 Ribosomal protein S13/S18 L2M54_16375 PF00444 Ribosomal protein L36 L2M54_16380 PF00344 SecY translocase L2M54_16385 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A L2M54_16390 PF00327 Ribosomal protein L30p/L7e L2M54_16395 PF00333 Ribosomal protein S5, N-terminal domain L2M54_16395 PF03719 Ribosomal protein S5, C-terminal domain L2M54_16400 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast L2M54_16405 PF00347 Ribosomal protein L6 L2M54_16410 PF00410 Ribosomal protein S8 L2M54_16415 PF00253 Ribosomal protein S14p/S29e L2M54_16420 PF00673 ribosomal L5P family C-terminus L2M54_16420 PF00281 Ribosomal protein L5 L2M54_16425 PF00467 KOW motif L2M54_16425 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 L2M54_16430 PF00238 Ribosomal protein L14p/L23e L2M54_16435 PF00366 Ribosomal protein S17 L2M54_16440 PF00831 Ribosomal L29 protein L2M54_16445 PF00252 Ribosomal protein L16p/L10e L2M54_16455 PF00237 Ribosomal protein L22p/L17e L2M54_16460 PF00203 Ribosomal protein S19 L2M54_16465 PF03947 Ribosomal Proteins L2, C-terminal domain L2M54_16465 PF00181 Ribosomal Proteins L2, RNA binding domain L2M54_16470 PF00276 Ribosomal protein L23 L2M54_16475 PF00573 Ribosomal protein L4/L1 family L2M54_16480 PF00297 Ribosomal protein L3 L2M54_16485 PF00338 Ribosomal protein S10p/S20e L2M54_16490 PF00117 Glutamine amidotransferase class-I L2M54_16495 PF01053 Cys/Met metabolism PLP-dependent enzyme L2M54_16500 PF05872 Bacterial protein of unknown function (DUF853) L2M54_16510 PF00042 Globin L2M54_16510 PF00175 Oxidoreductase NAD-binding domain L2M54_16510 PF00970 Oxidoreductase FAD-binding domain L2M54_16515 PF02082 Transcriptional regulator L2M54_16520 PF01926 50S ribosome-binding GTPase L2M54_16530 PF00375 Sodium:dicarboxylate symporter family L2M54_16540 PF01553 Acyltransferase L2M54_16555 PF00271 Helicase conserved C-terminal domain L2M54_16555 PF17191 RecG wedge domain L2M54_16555 PF00270 DEAD/DEAH box helicase L2M54_16560 PF00156 Phosphoribosyl transferase domain L2M54_16565 PF00293 NUDIX domain L2M54_16570 PF03641 Possible lysine decarboxylase L2M54_16575 PF01544 CorA-like Mg2+ transporter protein L2M54_16585 PF05494 MlaC protein L2M54_16595 PF02405 Permease MlaE L2M54_16600 PF00005 ABC transporter L2M54_16610 PF03880 DbpA RNA binding domain L2M54_16610 PF00271 Helicase conserved C-terminal domain L2M54_16610 PF00270 DEAD/DEAH box helicase L2M54_16610 PF12343 Cold shock protein DEAD box A L2M54_16615 PF00459 Inositol monophosphatase family L2M54_16620 PF13292 1-deoxy-D-xylulose-5-phosphate synthase L2M54_16620 PF02779 Transketolase, pyrimidine binding domain L2M54_16620 PF02780 Transketolase, C-terminal domain L2M54_16625 PF00925 GTP cyclohydrolase II L2M54_16630 PF01218 Coproporphyrinogen III oxidase L2M54_16635 PF18317 Shikimate 5'-dehydrogenase C-terminal domain L2M54_16635 PF01488 Shikimate / quinate 5-dehydrogenase L2M54_16635 PF08501 Shikimate dehydrogenase substrate binding domain L2M54_16645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain L2M54_16645 PF02770 Acyl-CoA dehydrogenase, middle domain L2M54_16645 PF12806 Acetyl-CoA dehydrogenase C-terminal like L2M54_16645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain L2M54_16655 PF04024 PspC domain L2M54_16660 PF00571 CBS domain L2M54_16685 PF02091 Glycyl-tRNA synthetase alpha subunit L2M54_16690 PF05746 DALR anticodon binding domain L2M54_16690 PF02092 Glycyl-tRNA synthetase beta subunit L2M54_16695 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system L2M54_16715 PF00892 EamA-like transporter family L2M54_16720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_16720 PF03466 LysR substrate binding domain L2M54_16750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family L2M54_16755 PF04996 Succinylarginine dihydrolase L2M54_16760 PF00171 Aldehyde dehydrogenase family L2M54_16765 PF04958 Arginine N-succinyltransferase beta subunit L2M54_16770 PF00202 Aminotransferase class-III L2M54_16775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase L2M54_16775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain L2M54_16780 PF00324 Amino acid permease L2M54_16790 PF08241 Methyltransferase domain L2M54_16810 PF13614 AAA domain L2M54_16815 PF01594 AI-2E family transporter L2M54_16820 PF00080 Copper/zinc superoxide dismutase (SODC) L2M54_16825 PF12805 FUSC-like inner membrane protein yccS L2M54_16830 PF07690 Major Facilitator Superfamily L2M54_16840 PF02525 Flavodoxin-like fold L2M54_16845 PF03992 Antibiotic biosynthesis monooxygenase L2M54_16855 PF02913 FAD linked oxidases, C-terminal domain L2M54_16855 PF01565 FAD binding domain L2M54_16860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain L2M54_16860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain L2M54_16865 PF00892 EamA-like transporter family L2M54_16870 PF00892 EamA-like transporter family L2M54_16880 PF01925 Sulfite exporter TauE/SafE L2M54_16885 PF09157 Pseudouridine synthase II TruB, C-terminal L2M54_16885 PF16198 tRNA pseudouridylate synthase B C-terminal domain L2M54_16885 PF01509 TruB family pseudouridylate synthase (N terminal domain) L2M54_16890 PF03280 Proteobacterial lipase chaperone protein L2M54_16895 PF00561 alpha/beta hydrolase fold L2M54_16900 PF01245 Ribosomal protein L19 L2M54_16905 PF01746 tRNA (Guanine-1)-methyltransferase L2M54_16910 PF05239 PRC-barrel domain L2M54_16910 PF01782 RimM N-terminal domain L2M54_16915 PF00886 Ribosomal protein S16 L2M54_16955 PF02401 LytB protein L2M54_16960 PF00625 Guanylate kinase L2M54_16965 PF01192 RNA polymerase Rpb6 L2M54_16975 PF13291 ACT domain L2M54_16975 PF04607 Region found in RelA / SpoT proteins L2M54_16975 PF02824 TGS domain L2M54_16980 PF01042 Endoribonuclease L-PSP L2M54_16985 PF04324 BFD-like [2Fe-2S] binding domain L2M54_16990 PF00210 Ferritin-like domain L2M54_16995 PF15864 Protein glycosylation ligase L2M54_16995 PF04932 O-Antigen ligase L2M54_16995 PF11846 Virulence factor membrane-bound polymerase, C-terminal L2M54_17005 PF00114 Pilin (bacterial filament) L2M54_17005 PF07963 Prokaryotic N-terminal methylation motif L2M54_17015 PF04536 TPM domain L2M54_17020 PF04011 LemA family L2M54_17030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster L2M54_17030 PF07992 Pyridine nucleotide-disulphide oxidoreductase L2M54_17035 PF00310 Glutamine amidotransferases class-II L2M54_17035 PF04898 Glutamate synthase central domain L2M54_17035 PF01645 Conserved region in glutamate synthase L2M54_17035 PF01493 GXGXG motif L2M54_17045 PF01761 3-dehydroquinate synthase L2M54_17050 PF01202 Shikimate kinase L2M54_17055 PF11741 AMIN domain L2M54_17055 PF00263 Bacterial type II and III secretion system protein L2M54_17055 PF03958 Bacterial type II/III secretion system short domain L2M54_17055 PF07660 Secretin and TonB N terminus short domain L2M54_17065 PF04350 Pilus assembly protein, PilO L2M54_17070 PF05137 Fimbrial assembly protein (PilN) L2M54_17075 PF11104 Type IV pilus assembly protein PilM; L2M54_17080 PF00912 Transglycosylase L2M54_17080 PF00905 Penicillin binding protein transpeptidase domain L2M54_17080 PF17092 Penicillin-binding protein OB-like domain L2M54_17085 PF13847 Methyltransferase domain L2M54_17095 PF00953 Glycosyl transferase family 4 L2M54_17100 PF01225 Mur ligase family, catalytic domain L2M54_17100 PF02875 Mur ligase family, glutamate ligase domain L2M54_17100 PF08245 Mur ligase middle domain L2M54_17105 PF01225 Mur ligase family, catalytic domain L2M54_17105 PF02875 Mur ligase family, glutamate ligase domain L2M54_17105 PF08245 Mur ligase middle domain L2M54_17120 PF01795 MraW methylase family L2M54_17135 PF00749 tRNA synthetases class I (E and Q), catalytic domain L2M54_17180 PF01545 Cation efflux family L2M54_17185 PF00873 AcrB/AcrD/AcrF family L2M54_17190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2M54_17190 PF00529 HlyD membrane-fusion protein of T1SS L2M54_17215 PF12848 ABC transporter L2M54_17215 PF00005 ABC transporter L2M54_17220 PF01053 Cys/Met metabolism PLP-dependent enzyme L2M54_17225 PF00106 short chain dehydrogenase L2M54_17230 PF01740 STAS domain L2M54_17230 PF00916 Sulfate permease family L2M54_17235 PF17674 HHH domain L2M54_17235 PF00575 S1 RNA binding domain L2M54_17235 PF09371 Tex-like protein N-terminal domain L2M54_17235 PF16921 Tex protein YqgF-like domain L2M54_17240 PF00072 Response regulator receiver domain L2M54_17240 PF00486 Transcriptional regulatory protein, C terminal L2M54_17245 PF00672 HAMP domain L2M54_17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_17245 PF00512 His Kinase A (phospho-acceptor) domain L2M54_17255 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain L2M54_17255 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain L2M54_17265 PF01695 IstB-like ATP binding protein L2M54_17270 PF02796 Helix-turn-helix domain of resolvase L2M54_17270 PF00665 Integrase core domain L2M54_17295 PF00475 Imidazoleglycerol-phosphate dehydratase L2M54_17300 PF00117 Glutamine amidotransferase class-I L2M54_17315 PF00977 Histidine biosynthesis protein L2M54_17340 PF01636 Phosphotransferase enzyme family L2M54_17345 PF00977 Histidine biosynthesis protein L2M54_17385 PF02705 K+ potassium transporter L2M54_17395 PF13356 Arm DNA-binding domain L2M54_17395 PF00589 Phage integrase family L2M54_17415 PF18273 Type III R-M EcoP15I C-terminal domain L2M54_17415 PF01555 DNA methylase L2M54_17420 PF00271 Helicase conserved C-terminal domain L2M54_17420 PF00176 SNF2 family N-terminal domain L2M54_17485 PF07690 Major Facilitator Superfamily L2M54_17505 PF00873 AcrB/AcrD/AcrF family L2M54_17510 PF00529 HlyD membrane-fusion protein of T1SS L2M54_17510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2M54_17560 PF02525 Flavodoxin-like fold L2M54_17565 PF01638 HxlR-like helix-turn-helix L2M54_17590 PF12833 Helix-turn-helix domain L2M54_17590 PF02311 AraC-like ligand binding domain L2M54_17595 PF00248 Aldo/keto reductase family L2M54_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_17615 PF03466 LysR substrate binding domain L2M54_17620 PF07690 Major Facilitator Superfamily L2M54_17640 PF01593 Flavin containing amine oxidoreductase L2M54_17645 PF05726 Pirin C-terminal cupin domain L2M54_17645 PF02678 Pirin L2M54_17650 PF00857 Isochorismatase family L2M54_17655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_17660 PF00171 Aldehyde dehydrogenase family L2M54_17665 PF00202 Aminotransferase class-III L2M54_17670 PF00392 Bacterial regulatory proteins, gntR family L2M54_17670 PF00155 Aminotransferase class I and II L2M54_17675 PF00324 Amino acid permease L2M54_17685 PF03591 AzlC protein L2M54_17695 PF00436 Single-strand binding protein family L2M54_17700 PF07690 Major Facilitator Superfamily L2M54_17710 PF02581 Thiamine monophosphate synthase L2M54_17710 PF03070 TENA/THI-4/PQQC family L2M54_17710 PF08543 Phosphomethylpyrimidine kinase L2M54_17715 PF06942 GlpM protein L2M54_17725 PF00107 Zinc-binding dehydrogenase L2M54_17725 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_17730 PF16925 Tetracyclin repressor-like, C-terminal domain L2M54_17730 PF00440 Bacterial regulatory proteins, tetR family L2M54_17735 PF17755 UvrA DNA-binding domain L2M54_17735 PF17760 UvrA interaction domain L2M54_17735 PF00005 ABC transporter L2M54_17740 PF00990 Diguanylate cyclase, GGDEF domain L2M54_17750 PF02028 BCCT, betaine/carnitine/choline family transporter L2M54_17760 PF00474 Sodium:solute symporter family L2M54_17765 PF04341 Protein of unknown function, DUF485 L2M54_17770 PF00072 Response regulator receiver domain L2M54_17770 PF00672 HAMP domain L2M54_17770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_17770 PF00512 His Kinase A (phospho-acceptor) domain L2M54_17770 PF01627 Hpt domain L2M54_17780 PF00196 Bacterial regulatory proteins, luxR family L2M54_17780 PF00072 Response regulator receiver domain L2M54_17785 PF03358 NADPH-dependent FMN reductase L2M54_17790 PF00296 Luciferase-like monooxygenase L2M54_17795 PF01037 Lrp/AsnC ligand binding domain L2M54_17800 PF00857 Isochorismatase family L2M54_17805 PF16177 Acetyl-coenzyme A synthetase N-terminus L2M54_17805 PF13193 AMP-binding enzyme C-terminal domain L2M54_17805 PF00501 AMP-binding enzyme L2M54_17815 PF00924 Mechanosensitive ion channel L2M54_17820 PF04452 RNA methyltransferase L2M54_17825 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) L2M54_17830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family L2M54_17850 PF17768 RecJ OB domain L2M54_17850 PF01368 DHH family L2M54_17850 PF02272 DHHA1 domain L2M54_17855 PF01243 Pyridoxamine 5'-phosphate oxidase L2M54_17855 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region L2M54_17860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain L2M54_17860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III L2M54_17860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II L2M54_17860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I L2M54_17865 PF00571 CBS domain L2M54_17865 PF00478 IMP dehydrogenase / GMP reductase domain L2M54_17870 PF03692 Putative zinc- or iron-chelating domain L2M54_17875 PF00258 Flavodoxin L2M54_17875 PF01613 Flavin reductase like domain L2M54_17880 PF07715 TonB-dependent Receptor Plug Domain L2M54_17880 PF00593 TonB dependent receptor L2M54_17885 PF01169 Uncharacterized protein family UPF0016 L2M54_17895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) L2M54_17895 PF00364 Biotin-requiring enzyme L2M54_17895 PF02817 e3 binding domain L2M54_17900 PF17831 Pyruvate dehydrogenase E1 component middle domain L2M54_17900 PF00456 Transketolase, thiamine diphosphate binding domain L2M54_17905 PF01551 Peptidase family M23 L2M54_17915 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase L2M54_17920 PF00091 Tubulin/FtsZ family, GTPase domain L2M54_17920 PF12327 FtsZ family, C-terminal domain L2M54_17925 PF02491 SHS2 domain inserted in FTSA L2M54_17930 PF08478 POTRA domain, FtsQ-type L2M54_17930 PF03799 Cell division protein FtsQ L2M54_17935 PF01820 D-ala D-ala ligase N-terminus L2M54_17935 PF07478 D-ala D-ala ligase C-terminus L2M54_17940 PF02875 Mur ligase family, glutamate ligase domain L2M54_17940 PF01225 Mur ligase family, catalytic domain L2M54_17940 PF08245 Mur ligase middle domain L2M54_17945 PF04101 Glycosyltransferase family 28 C-terminal domain L2M54_17945 PF03033 Glycosyltransferase family 28 N-terminal domain L2M54_17950 PF02951 Prokaryotic glutathione synthetase, N-terminal domain L2M54_17950 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain L2M54_17960 PF00593 TonB dependent receptor L2M54_17960 PF07715 TonB-dependent Receptor Plug Domain L2M54_17980 PF13613 Helix-turn-helix of DDE superfamily endonuclease L2M54_17980 PF13359 DDE superfamily endonuclease L2M54_17985 PF00156 Phosphoribosyl transferase domain L2M54_17990 PF03372 Endonuclease/Exonuclease/phosphatase family L2M54_17995 PF03960 ArsC family L2M54_18005 PF07859 alpha/beta hydrolase fold L2M54_18010 PF00990 Diguanylate cyclase, GGDEF domain L2M54_18010 PF07694 5TMR of 5TMR-LYT L2M54_18015 PF11412 Disulphide bond corrector protein DsbC L2M54_18015 PF02683 Cytochrome C biogenesis protein transmembrane region L2M54_18045 PF00576 HIUase/Transthyretin family L2M54_18050 PF00860 Permease family L2M54_18060 PF01494 FAD binding domain L2M54_18065 PF03561 Allantoicase repeat L2M54_18070 PF04115 Ureidoglycolate lyase L2M54_18075 PF00106 short chain dehydrogenase L2M54_18080 PF01751 Toprim domain L2M54_18080 PF00986 DNA gyrase B subunit, carboxyl terminus L2M54_18080 PF00204 DNA gyrase B L2M54_18080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_18085 PF05728 Uncharacterised protein family (UPF0227) L2M54_18130 PF01510 N-acetylmuramoyl-L-alanine amidase L2M54_18130 PF01476 LysM domain L2M54_18130 PF01471 Putative peptidoglycan binding domain L2M54_18135 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) L2M54_18135 PF04717 Type VI secretion system, phage-baseplate injector L2M54_18135 PF13296 Putative type VI secretion system Rhs element Vgr L2M54_18140 PF02600 Disulfide bond formation protein DsbB L2M54_18145 PF04262 Glutamate-cysteine ligase L2M54_18160 PF04286 Protein of unknown function (DUF445) L2M54_18165 PF00155 Aminotransferase class I and II L2M54_18170 PF01554 MatE L2M54_18175 PF00106 short chain dehydrogenase L2M54_18185 PF00072 Response regulator receiver domain L2M54_18185 PF00486 Transcriptional regulatory protein, C terminal L2M54_18190 PF00989 PAS fold L2M54_18190 PF00512 His Kinase A (phospho-acceptor) domain L2M54_18190 PF11808 Phosphate regulon sensor protein PhoR L2M54_18190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase L2M54_18200 PF02666 Phosphatidylserine decarboxylase L2M54_18205 PF00581 Rhodanese-like domain L2M54_18210 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain L2M54_18210 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family L2M54_18215 PF02580 D-Tyr-tRNA(Tyr) deacylase L2M54_18240 PF00925 GTP cyclohydrolase II L2M54_18240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase L2M54_18245 PF00885 6,7-dimethyl-8-ribityllumazine synthase L2M54_18250 PF01029 NusB family L2M54_18255 PF00586 AIR synthase related protein, N-terminal domain L2M54_18255 PF02769 AIR synthase related protein, C-terminal domain L2M54_18260 PF04608 Phosphatidylglycerophosphatase A L2M54_18265 PF14602 Hexapeptide repeat of succinyl-transferase L2M54_18265 PF12804 MobA-like NTP transferase domain L2M54_18265 PF00132 Bacterial transferase hexapeptide (six repeats) L2M54_18270 PF01380 SIS domain L2M54_18280 PF01177 Asp/Glu/Hydantoin racemase L2M54_18295 PF00491 Arginase family L2M54_18300 PF01979 Amidohydrolase family L2M54_18305 PF00324 Amino acid permease L2M54_18310 PF00221 Aromatic amino acid lyase L2M54_18315 PF01175 Urocanase Rossmann-like domain L2M54_18315 PF17392 Urocanase C-terminal domain L2M54_18315 PF17391 Urocanase N-terminal domain L2M54_18320 PF05962 HutD L2M54_18325 PF07702 UTRA domain L2M54_18325 PF00392 Bacterial regulatory proteins, gntR family L2M54_18335 PF07683 Cobalamin synthesis protein cobW C-terminal domain L2M54_18335 PF02492 CobW/HypB/UreG, nucleotide-binding domain L2M54_18345 PF00324 Amino acid permease L2M54_18355 PF02798 Glutathione S-transferase, N-terminal domain L2M54_18355 PF14497 Glutathione S-transferase, C-terminal domain L2M54_18360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L2M54_18370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily L2M54_18375 PF04463 Protein of unknown function (DUF523) L2M54_18380 PF01554 MatE L2M54_18385 PF01758 Sodium Bile acid symporter family L2M54_18390 PF00857 Isochorismatase family L2M54_18395 PF00701 Dihydrodipicolinate synthetase family L2M54_18405 PF01259 SAICAR synthetase L2M54_18415 PF01226 Formate/nitrite transporter L2M54_18420 PF16193 AAA C-terminal domain L2M54_18420 PF12002 MgsA AAA+ ATPase C terminal L2M54_18420 PF00004 ATPase family associated with various cellular activities (AAA) L2M54_18425 PF07995 Glucose / Sorbosone dehydrogenase L2M54_18430 PF03692 Putative zinc- or iron-chelating domain L2M54_18435 PF07043 Protein of unknown function (DUF1328) L2M54_18450 PF10576 Iron-sulfur binding domain of endonuclease III L2M54_18450 PF14815 NUDIX domain L2M54_18450 PF00730 HhH-GPD superfamily base excision DNA repair protein L2M54_18450 PF00633 Helix-hairpin-helix motif L2M54_18465 PF03352 Methyladenine glycosylase L2M54_18470 PF00107 Zinc-binding dehydrogenase L2M54_18470 PF08240 Alcohol dehydrogenase GroES-like domain L2M54_18475 PF00392 Bacterial regulatory proteins, gntR family L2M54_18475 PF00155 Aminotransferase class I and II L2M54_18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_18490 PF03466 LysR substrate binding domain L2M54_18495 PF00248 Aldo/keto reductase family L2M54_18500 PF07690 Major Facilitator Superfamily L2M54_18510 PF05173 Dihydrodipicolinate reductase, C-terminus L2M54_18510 PF01113 Dihydrodipicolinate reductase, N-terminus L2M54_18520 PF00684 DnaJ central domain L2M54_18520 PF00226 DnaJ domain L2M54_18520 PF01556 DnaJ C terminal domain L2M54_18530 PF00873 AcrB/AcrD/AcrF family L2M54_18535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion L2M54_18540 PF00440 Bacterial regulatory proteins, tetR family L2M54_18540 PF08361 MAATS-type transcriptional repressor, C-terminal region L2M54_18545 PF00311 Phosphoenolpyruvate carboxylase L2M54_18550 PF00860 Permease family L2M54_18555 PF03466 LysR substrate binding domain L2M54_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_18570 PF00920 Dehydratase family L2M54_18575 PF02911 Formyl transferase, C-terminal domain L2M54_18575 PF00551 Formyl transferase L2M54_18580 PF01029 NusB family L2M54_18580 PF01189 16S rRNA methyltransferase RsmB/F L2M54_18590 PF00209 Sodium:neurotransmitter symporter family L2M54_18630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD L2M54_18635 PF07859 alpha/beta hydrolase fold L2M54_18655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family L2M54_18655 PF03466 LysR substrate binding domain L2M54_18660 PF01025 GrpE L2M54_18665 PF00012 Hsp70 protein L2M54_18685 PF13406 Transglycosylase SLT domain L2M54_18690 PF02222 ATP-grasp domain L2M54_18690 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain L2M54_18695 PF00731 AIR carboxylase L2M54_18705 PF08245 Mur ligase middle domain L2M54_18705 PF02875 Mur ligase family, glutamate ligase domain L2M54_18705 PF01225 Mur ligase family, catalytic domain L2M54_18715 PF01569 PAP2 superfamily L2M54_18720 PF03741 Integral membrane protein TerC family L2M54_18730 PF03738 Glutathionylspermidine synthase preATP-grasp L2M54_18735 PF00355 Rieske [2Fe-2S] domain L2M54_18740 PF01979 Amidohydrolase family L2M54_18745 PF00156 Phosphoribosyl transferase domain L2M54_18755 PF10411 Disulfide bond isomerase protein N-terminus L2M54_18755 PF13098 Thioredoxin-like domain L2M54_18760 PF01545 Cation efflux family L2M54_18760 PF16916 Dimerisation domain of Zinc Transporter L2M54_18765 PF02583 Metal-sensitive transcriptional repressor L2M54_18770 PF01926 50S ribosome-binding GTPase L2M54_18770 PF12631 MnmE helical domain L2M54_18770 PF10396 GTP-binding protein TrmE N-terminus L2M54_18775 PF14849 YidC periplasmic domain L2M54_18775 PF02096 60Kd inner membrane protein L2M54_18780 PF01809 Putative membrane protein insertion efficiency factor L2M54_18785 PF00825 Ribonuclease P L2M54_18790 PF00468 Ribosomal protein L34