locus-tag class description EP552_00005 PF00308 Bacterial dnaA protein EP552_00005 PF08299 Bacterial dnaA protein helix-turn-helix EP552_00005 PF11638 DnaA N-terminal domain EP552_00010 PF02767 DNA polymerase III beta subunit, central domain EP552_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EP552_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EP552_00015 PF02463 RecF/RecN/SMC N terminal domain EP552_00020 PF18053 DNA gyrase B subunit insert domain EP552_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_00020 PF00986 DNA gyrase B subunit, carboxyl terminus EP552_00020 PF00204 DNA gyrase B EP552_00020 PF01751 Toprim domain EP552_00030 PF09335 SNARE associated Golgi protein EP552_00035 PF00005 ABC transporter EP552_00035 PF12848 ABC transporter EP552_00055 PF01521 Iron-sulphur cluster biosynthesis EP552_00060 PF00561 alpha/beta hydrolase fold EP552_00065 PF03702 Anhydro-N-acetylmuramic acid kinase EP552_00070 PF00579 tRNA synthetases class I (W and Y) EP552_00115 PF00209 Sodium:neurotransmitter symporter family EP552_00125 PF01189 16S rRNA methyltransferase RsmB/F EP552_00125 PF01029 NusB family EP552_00130 PF00551 Formyl transferase EP552_00130 PF02911 Formyl transferase, C-terminal domain EP552_00135 PF00920 Dehydratase family EP552_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_00150 PF03466 LysR substrate binding domain EP552_00155 PF00860 Permease family EP552_00160 PF00311 Phosphoenolpyruvate carboxylase EP552_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region EP552_00165 PF00440 Bacterial regulatory proteins, tetR family EP552_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_00175 PF00873 AcrB/AcrD/AcrF family EP552_00185 PF01556 DnaJ C terminal domain EP552_00185 PF00226 DnaJ domain EP552_00185 PF00684 DnaJ central domain EP552_00195 PF01113 Dihydrodipicolinate reductase, N-terminus EP552_00195 PF05173 Dihydrodipicolinate reductase, C-terminus EP552_00205 PF07690 Major Facilitator Superfamily EP552_00210 PF00248 Aldo/keto reductase family EP552_00215 PF03466 LysR substrate binding domain EP552_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_00230 PF00155 Aminotransferase class I and II EP552_00230 PF00392 Bacterial regulatory proteins, gntR family EP552_00235 PF00107 Zinc-binding dehydrogenase EP552_00235 PF08240 Alcohol dehydrogenase GroES-like domain EP552_00240 PF03352 Methyladenine glycosylase EP552_00255 PF14815 NUDIX domain EP552_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein EP552_00255 PF00633 Helix-hairpin-helix motif EP552_00255 PF10576 Iron-sulfur binding domain of endonuclease III EP552_00265 PF02230 Phospholipase/Carboxylesterase EP552_00270 PF07043 Protein of unknown function (DUF1328) EP552_00275 PF03692 Putative zinc- or iron-chelating domain EP552_00280 PF07995 Glucose / Sorbosone dehydrogenase EP552_00285 PF16193 AAA C-terminal domain EP552_00285 PF12002 MgsA AAA+ ATPase C terminal EP552_00285 PF00004 ATPase family associated with various cellular activities (AAA) EP552_00290 PF01226 Formate/nitrite transporter EP552_00305 PF01259 SAICAR synthetase EP552_00315 PF00701 Dihydrodipicolinate synthetase family EP552_00320 PF00857 Isochorismatase family EP552_00325 PF01758 Sodium Bile acid symporter family EP552_00330 PF01554 MatE EP552_00335 PF04463 Protein of unknown function (DUF523) EP552_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP552_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP552_00355 PF14497 Glutathione S-transferase, C-terminal domain EP552_00355 PF02798 Glutathione S-transferase, N-terminal domain EP552_00365 PF00324 Amino acid permease EP552_00375 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP552_00375 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP552_00385 PF00392 Bacterial regulatory proteins, gntR family EP552_00385 PF07702 UTRA domain EP552_00390 PF05962 HutD EP552_00395 PF01175 Urocanase Rossmann-like domain EP552_00395 PF17392 Urocanase C-terminal domain EP552_00395 PF17391 Urocanase N-terminal domain EP552_00400 PF00221 Aromatic amino acid lyase EP552_00405 PF00324 Amino acid permease EP552_00410 PF01979 Amidohydrolase family EP552_00415 PF00491 Arginase family EP552_00430 PF01177 Asp/Glu/Hydantoin racemase EP552_00440 PF02086 D12 class N6 adenine-specific DNA methyltransferase EP552_00455 PF06527 TniQ EP552_00455 PF15978 Tn7-like transposition protein D EP552_00460 PF13401 AAA domain EP552_00460 PF11426 Tn7 transposition regulator TnsC EP552_00465 PF00665 Integrase core domain EP552_00470 PF08722 TnsA endonuclease N terminal EP552_00470 PF08721 TnsA endonuclease C terminal EP552_00475 PF01380 SIS domain EP552_00480 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_00480 PF12804 MobA-like NTP transferase domain EP552_00480 PF14602 Hexapeptide repeat of succinyl-transferase EP552_00485 PF04608 Phosphatidylglycerophosphatase A EP552_00490 PF00586 AIR synthase related protein, N-terminal domain EP552_00490 PF02769 AIR synthase related protein, C-terminal domain EP552_00495 PF01029 NusB family EP552_00500 PF00885 6,7-dimethyl-8-ribityllumazine synthase EP552_00505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP552_00505 PF00925 GTP cyclohydrolase II EP552_00535 PF02580 D-Tyr-tRNA(Tyr) deacylase EP552_00540 PF06628 Catalase-related immune-responsive EP552_00540 PF00199 Catalase EP552_00550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EP552_00550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP552_00555 PF00581 Rhodanese-like domain EP552_00560 PF02666 Phosphatidylserine decarboxylase EP552_00565 PF03069 Acetamidase/Formamidase family EP552_00570 PF01547 Bacterial extracellular solute-binding protein EP552_00580 PF00989 PAS fold EP552_00580 PF00512 His Kinase A (phospho-acceptor) domain EP552_00580 PF11808 Phosphate regulon sensor protein PhoR EP552_00580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_00585 PF00072 Response regulator receiver domain EP552_00585 PF00486 Transcriptional regulatory protein, C terminal EP552_00595 PF00106 short chain dehydrogenase EP552_00600 PF01554 MatE EP552_00605 PF00155 Aminotransferase class I and II EP552_00610 PF04286 Protein of unknown function (DUF445) EP552_00625 PF04262 Glutamate-cysteine ligase EP552_00630 PF02600 Disulfide bond formation protein DsbB EP552_00635 PF04717 Type VI secretion system, phage-baseplate injector EP552_00645 PF03373 Octapeptide repeat EP552_00645 PF04650 YSIRK type signal peptide EP552_00645 PF00746 LPXTG cell wall anchor motif EP552_00645 PF02216 B domain EP552_00645 PF01476 LysM domain EP552_00655 PF13817 IS66 C-terminal element EP552_00655 PF03050 Transposase IS66 family EP552_00655 PF13005 zinc-finger binding domain of transposase IS66 EP552_00655 PF13007 Transposase C of IS166 homeodomain EP552_00675 PF05728 Uncharacterised protein family (UPF0227) EP552_00680 PF00986 DNA gyrase B subunit, carboxyl terminus EP552_00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_00680 PF01751 Toprim domain EP552_00680 PF00204 DNA gyrase B EP552_00685 PF00106 short chain dehydrogenase EP552_00690 PF04115 Ureidoglycolate lyase EP552_00695 PF03561 Allantoicase repeat EP552_00700 PF01494 FAD binding domain EP552_00710 PF00860 Permease family EP552_00715 PF00576 HIUase/Transthyretin family EP552_00745 PF02683 Cytochrome C biogenesis protein transmembrane region EP552_00745 PF11412 Disulphide bond corrector protein DsbC EP552_00750 PF07694 5TMR of 5TMR-LYT EP552_00750 PF00990 Diguanylate cyclase, GGDEF domain EP552_00755 PF07859 alpha/beta hydrolase fold EP552_00765 PF03960 ArsC family EP552_00770 PF03372 Endonuclease/Exonuclease/phosphatase family EP552_00775 PF00156 Phosphoribosyl transferase domain EP552_00790 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EP552_00790 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EP552_00795 PF04101 Glycosyltransferase family 28 C-terminal domain EP552_00795 PF03033 Glycosyltransferase family 28 N-terminal domain EP552_00800 PF02875 Mur ligase family, glutamate ligase domain EP552_00800 PF01225 Mur ligase family, catalytic domain EP552_00800 PF08245 Mur ligase middle domain EP552_00805 PF07478 D-ala D-ala ligase C-terminus EP552_00805 PF01820 D-ala D-ala ligase N-terminus EP552_00810 PF08478 POTRA domain, FtsQ-type EP552_00810 PF03799 Cell division protein FtsQ EP552_00815 PF02491 SHS2 domain inserted in FTSA EP552_00820 PF00091 Tubulin/FtsZ family, GTPase domain EP552_00820 PF12327 FtsZ family, C-terminal domain EP552_00825 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EP552_00835 PF01551 Peptidase family M23 EP552_00840 PF17831 Pyruvate dehydrogenase E1 component middle domain EP552_00840 PF00456 Transketolase, thiamine diphosphate binding domain EP552_00845 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP552_00845 PF02817 e3 binding domain EP552_00845 PF00364 Biotin-requiring enzyme EP552_00855 PF01169 Uncharacterized protein family UPF0016 EP552_00860 PF00593 TonB dependent receptor EP552_00860 PF07715 TonB-dependent Receptor Plug Domain EP552_00865 PF01613 Flavin reductase like domain EP552_00865 PF00258 Flavodoxin EP552_00870 PF03692 Putative zinc- or iron-chelating domain EP552_00875 PF00571 CBS domain EP552_00875 PF00478 IMP dehydrogenase / GMP reductase domain EP552_00880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP552_00880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP552_00880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP552_00880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP552_00885 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EP552_00885 PF01243 Pyridoxamine 5'-phosphate oxidase EP552_00890 PF02272 DHHA1 domain EP552_00890 PF01368 DHH family EP552_00890 PF17768 RecJ OB domain EP552_00910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP552_00915 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EP552_00920 PF04452 RNA methyltransferase EP552_00925 PF00924 Mechanosensitive ion channel EP552_00935 PF16177 Acetyl-coenzyme A synthetase N-terminus EP552_00935 PF13193 AMP-binding enzyme C-terminal domain EP552_00935 PF00501 AMP-binding enzyme EP552_00940 PF00857 Isochorismatase family EP552_00945 PF01037 Lrp/AsnC ligand binding domain EP552_00950 PF00296 Luciferase-like monooxygenase EP552_00955 PF03358 NADPH-dependent FMN reductase EP552_00960 PF00072 Response regulator receiver domain EP552_00960 PF00196 Bacterial regulatory proteins, luxR family EP552_00970 PF01627 Hpt domain EP552_00970 PF00672 HAMP domain EP552_00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_00970 PF00512 His Kinase A (phospho-acceptor) domain EP552_00970 PF00072 Response regulator receiver domain EP552_00975 PF04341 Protein of unknown function, DUF485 EP552_00980 PF00474 Sodium:solute symporter family EP552_00990 PF02028 BCCT, betaine/carnitine/choline family transporter EP552_01000 PF17158 Membrane-associated sensor, integral membrane domain EP552_01000 PF00990 Diguanylate cyclase, GGDEF domain EP552_01010 PF17760 UvrA interaction domain EP552_01010 PF17755 UvrA DNA-binding domain EP552_01010 PF00005 ABC transporter EP552_01015 PF00440 Bacterial regulatory proteins, tetR family EP552_01015 PF16925 Tetracyclin repressor-like, C-terminal domain EP552_01030 PF06942 GlpM protein EP552_01035 PF08543 Phosphomethylpyrimidine kinase EP552_01035 PF03070 TENA/THI-4/PQQC family EP552_01035 PF02581 Thiamine monophosphate synthase EP552_01045 PF07690 Major Facilitator Superfamily EP552_01050 PF00436 Single-strand binding protein family EP552_01060 PF03591 AzlC protein EP552_01070 PF00324 Amino acid permease EP552_01075 PF00392 Bacterial regulatory proteins, gntR family EP552_01075 PF00155 Aminotransferase class I and II EP552_01080 PF00202 Aminotransferase class-III EP552_01085 PF00171 Aldehyde dehydrogenase family EP552_01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_01095 PF00857 Isochorismatase family EP552_01100 PF02678 Pirin EP552_01100 PF05726 Pirin C-terminal cupin domain EP552_01105 PF01593 Flavin containing amine oxidoreductase EP552_01110 PF13005 zinc-finger binding domain of transposase IS66 EP552_01110 PF13817 IS66 C-terminal element EP552_01110 PF03050 Transposase IS66 family EP552_01110 PF13007 Transposase C of IS166 homeodomain EP552_01145 PF07690 Major Facilitator Superfamily EP552_01150 PF03466 LysR substrate binding domain EP552_01150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_01170 PF00248 Aldo/keto reductase family EP552_01175 PF02311 AraC-like ligand binding domain EP552_01175 PF12833 Helix-turn-helix domain EP552_01205 PF01638 HxlR-like helix-turn-helix EP552_01215 PF02525 Flavodoxin-like fold EP552_01235 PF02705 K+ potassium transporter EP552_01260 PF00230 Major intrinsic protein EP552_01275 PF00977 Histidine biosynthesis protein EP552_01280 PF01636 Phosphotransferase enzyme family EP552_01295 PF03992 Antibiotic biosynthesis monooxygenase EP552_01310 PF00977 Histidine biosynthesis protein EP552_01325 PF00117 Glutamine amidotransferase class-I EP552_01330 PF00475 Imidazoleglycerol-phosphate dehydratase EP552_01350 PF00583 Acetyltransferase (GNAT) family EP552_01355 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EP552_01355 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EP552_01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_01365 PF00512 His Kinase A (phospho-acceptor) domain EP552_01365 PF00672 HAMP domain EP552_01370 PF00486 Transcriptional regulatory protein, C terminal EP552_01370 PF00072 Response regulator receiver domain EP552_01375 PF09371 Tex-like protein N-terminal domain EP552_01375 PF17674 HHH domain EP552_01375 PF16921 Tex protein YqgF-like domain EP552_01375 PF00575 S1 RNA binding domain EP552_01380 PF00916 Sulfate permease family EP552_01380 PF01740 STAS domain EP552_01385 PF00106 short chain dehydrogenase EP552_01390 PF01053 Cys/Met metabolism PLP-dependent enzyme EP552_01395 PF12848 ABC transporter EP552_01395 PF00005 ABC transporter EP552_01420 PF04191 Phospholipid methyltransferase EP552_01440 PF00529 HlyD membrane-fusion protein of T1SS EP552_01440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_01445 PF00873 AcrB/AcrD/AcrF family EP552_01450 PF01545 Cation efflux family EP552_01480 PF00324 Amino acid permease EP552_01495 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP552_01510 PF01795 MraW methylase family EP552_01520 PF00905 Penicillin binding protein transpeptidase domain EP552_01520 PF03717 Penicillin-binding Protein dimerisation domain EP552_01525 PF02875 Mur ligase family, glutamate ligase domain EP552_01525 PF01225 Mur ligase family, catalytic domain EP552_01525 PF08245 Mur ligase middle domain EP552_01530 PF08245 Mur ligase middle domain EP552_01530 PF01225 Mur ligase family, catalytic domain EP552_01530 PF02875 Mur ligase family, glutamate ligase domain EP552_01535 PF00953 Glycosyl transferase family 4 EP552_01545 PF13847 Methyltransferase domain EP552_01550 PF00905 Penicillin binding protein transpeptidase domain EP552_01550 PF17092 Penicillin-binding protein OB-like domain EP552_01550 PF00912 Transglycosylase EP552_01575 PF11741 AMIN domain EP552_01575 PF00263 Bacterial type II and III secretion system protein EP552_01575 PF03958 Bacterial type II/III secretion system short domain EP552_01575 PF07660 Secretin and TonB N terminus short domain EP552_01580 PF01202 Shikimate kinase EP552_01585 PF01761 3-dehydroquinate synthase EP552_01595 PF01493 GXGXG motif EP552_01595 PF01645 Conserved region in glutamate synthase EP552_01595 PF00310 Glutamine amidotransferases class-II EP552_01595 PF04898 Glutamate synthase central domain EP552_01600 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EP552_01600 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_01610 PF04011 LemA family EP552_01615 PF04536 TPM domain EP552_01625 PF00114 Pilin (bacterial filament) EP552_01625 PF07963 Prokaryotic N-terminal methylation motif EP552_01630 PF15864 Protein glycosylation ligase EP552_01630 PF04932 O-Antigen ligase EP552_01630 PF11846 Virulence factor membrane-bound polymerase, C-terminal EP552_01635 PF00210 Ferritin-like domain EP552_01640 PF04324 BFD-like [2Fe-2S] binding domain EP552_01645 PF01042 Endoribonuclease L-PSP EP552_01650 PF04607 Region found in RelA / SpoT proteins EP552_01650 PF02824 TGS domain EP552_01650 PF13291 ACT domain EP552_01660 PF01192 RNA polymerase Rpb6 EP552_01665 PF00625 Guanylate kinase EP552_01670 PF02401 LytB protein EP552_01710 PF00886 Ribosomal protein S16 EP552_01715 PF01782 RimM N-terminal domain EP552_01715 PF05239 PRC-barrel domain EP552_01720 PF01746 tRNA (Guanine-1)-methyltransferase EP552_01725 PF01245 Ribosomal protein L19 EP552_01730 PF00561 alpha/beta hydrolase fold EP552_01735 PF03280 Proteobacterial lipase chaperone protein EP552_01740 PF01509 TruB family pseudouridylate synthase (N terminal domain) EP552_01740 PF16198 tRNA pseudouridylate synthase B C-terminal domain EP552_01740 PF09157 Pseudouridine synthase II TruB, C-terminal EP552_01745 PF01925 Sulfite exporter TauE/SafE EP552_01755 PF00892 EamA-like transporter family EP552_01760 PF00892 EamA-like transporter family EP552_01765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP552_01765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP552_01770 PF01565 FAD binding domain EP552_01770 PF02913 FAD linked oxidases, C-terminal domain EP552_01780 PF03992 Antibiotic biosynthesis monooxygenase EP552_01785 PF02525 Flavodoxin-like fold EP552_01795 PF07690 Major Facilitator Superfamily EP552_01815 PF00080 Copper/zinc superoxide dismutase (SODC) EP552_01820 PF01594 AI-2E family transporter EP552_01825 PF13614 AAA domain EP552_01845 PF08241 Methyltransferase domain EP552_01855 PF00324 Amino acid permease EP552_01860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP552_01860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP552_01865 PF00202 Aminotransferase class-III EP552_01870 PF04958 Arginine N-succinyltransferase beta subunit EP552_01875 PF00171 Aldehyde dehydrogenase family EP552_01880 PF04996 Succinylarginine dihydrolase EP552_01885 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP552_01915 PF03466 LysR substrate binding domain EP552_01915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_01920 PF00892 EamA-like transporter family EP552_01935 PF05746 DALR anticodon binding domain EP552_01935 PF02092 Glycyl-tRNA synthetase beta subunit EP552_01940 PF02091 Glycyl-tRNA synthetase alpha subunit EP552_01965 PF00571 CBS domain EP552_01970 PF04024 PspC domain EP552_01980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_01980 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP552_01980 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_01980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_01990 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EP552_01990 PF01488 Shikimate / quinate 5-dehydrogenase EP552_01990 PF08501 Shikimate dehydrogenase substrate binding domain EP552_01995 PF01218 Coproporphyrinogen III oxidase EP552_02000 PF00925 GTP cyclohydrolase II EP552_02005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EP552_02005 PF02779 Transketolase, pyrimidine binding domain EP552_02005 PF02780 Transketolase, C-terminal domain EP552_02010 PF00459 Inositol monophosphatase family EP552_02015 PF12343 Cold shock protein DEAD box A EP552_02015 PF03880 DbpA RNA binding domain EP552_02015 PF00270 DEAD/DEAH box helicase EP552_02015 PF00271 Helicase conserved C-terminal domain EP552_02025 PF00005 ABC transporter EP552_02030 PF02405 Permease MlaE EP552_02040 PF05494 MlaC protein EP552_02050 PF01544 CorA-like Mg2+ transporter protein EP552_02055 PF03641 Possible lysine decarboxylase EP552_02060 PF00293 NUDIX domain EP552_02065 PF00156 Phosphoribosyl transferase domain EP552_02070 PF00270 DEAD/DEAH box helicase EP552_02070 PF00271 Helicase conserved C-terminal domain EP552_02070 PF17191 RecG wedge domain EP552_02085 PF01553 Acyltransferase EP552_02095 PF00375 Sodium:dicarboxylate symporter family EP552_02105 PF01926 50S ribosome-binding GTPase EP552_02110 PF02082 Transcriptional regulator EP552_02115 PF00042 Globin EP552_02115 PF00970 Oxidoreductase FAD-binding domain EP552_02115 PF00175 Oxidoreductase NAD-binding domain EP552_02120 PF05872 Bacterial protein of unknown function (DUF853) EP552_02125 PF01053 Cys/Met metabolism PLP-dependent enzyme EP552_02130 PF00117 Glutamine amidotransferase class-I EP552_02135 PF00338 Ribosomal protein S10p/S20e EP552_02140 PF00297 Ribosomal protein L3 EP552_02145 PF00573 Ribosomal protein L4/L1 family EP552_02150 PF00276 Ribosomal protein L23 EP552_02155 PF03947 Ribosomal Proteins L2, C-terminal domain EP552_02155 PF00181 Ribosomal Proteins L2, RNA binding domain EP552_02160 PF00203 Ribosomal protein S19 EP552_02165 PF00237 Ribosomal protein L22p/L17e EP552_02170 PF07650 KH domain EP552_02170 PF00189 Ribosomal protein S3, C-terminal domain EP552_02175 PF00252 Ribosomal protein L16p/L10e EP552_02180 PF00831 Ribosomal L29 protein EP552_02185 PF00366 Ribosomal protein S17 EP552_02190 PF00238 Ribosomal protein L14p/L23e EP552_02195 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EP552_02195 PF00467 KOW motif EP552_02200 PF00673 ribosomal L5P family C-terminus EP552_02200 PF00281 Ribosomal protein L5 EP552_02205 PF00253 Ribosomal protein S14p/S29e EP552_02210 PF00410 Ribosomal protein S8 EP552_02215 PF00347 Ribosomal protein L6 EP552_02220 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EP552_02225 PF03719 Ribosomal protein S5, C-terminal domain EP552_02225 PF00333 Ribosomal protein S5, N-terminal domain EP552_02230 PF00327 Ribosomal protein L30p/L7e EP552_02235 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EP552_02240 PF00344 SecY translocase EP552_02245 PF00444 Ribosomal protein L36 EP552_02250 PF00416 Ribosomal protein S13/S18 EP552_02255 PF00411 Ribosomal protein S11 EP552_02260 PF00163 Ribosomal protein S4/S9 N-terminal domain EP552_02260 PF01479 S4 domain EP552_02265 PF01000 RNA polymerase Rpb3/RpoA insert domain EP552_02265 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EP552_02265 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EP552_02270 PF01196 Ribosomal protein L17 EP552_02275 PF00743 Flavin-binding monooxygenase-like EP552_02280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_02280 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_02280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_02285 PF03937 Flavinator of succinate dehydrogenase EP552_02315 PF09526 Probable metal-binding protein (DUF2387) EP552_02320 PF01432 Peptidase family M3 EP552_02325 PF08461 Ribonuclease R winged-helix domain EP552_02325 PF00575 S1 RNA binding domain EP552_02325 PF00773 RNB domain EP552_02325 PF08206 Ribonuclease B OB domain EP552_02325 PF17876 Cold shock domain EP552_02365 PF01557 Fumarylacetoacetate (FAA) hydrolase family EP552_02370 PF12833 Helix-turn-helix domain EP552_02375 PF00892 EamA-like transporter family EP552_02380 PF03631 Virulence factor BrkB EP552_02385 PF03358 NADPH-dependent FMN reductase EP552_02410 PF02130 Uncharacterized protein family UPF0054 EP552_02415 PF02562 PhoH-like protein EP552_02420 PF04055 Radical SAM superfamily EP552_02420 PF01938 TRAM domain EP552_02420 PF00919 Uncharacterized protein family UPF0004 EP552_02425 PF01464 Transglycosylase SLT domain EP552_02425 PF01551 Peptidase family M23 EP552_02425 PF10145 Phage-related minor tail protein EP552_02435 PF00056 lactate/malate dehydrogenase, NAD binding domain EP552_02435 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EP552_02455 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EP552_02460 PF01066 CDP-alcohol phosphatidyltransferase EP552_02505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_02505 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_02505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_02510 PF00440 Bacterial regulatory proteins, tetR family EP552_02510 PF17932 Tetracyclin repressor-like, C-terminal domain EP552_02525 PF01039 Carboxyl transferase domain EP552_02530 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_02530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_02530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_02540 PF00364 Biotin-requiring enzyme EP552_02540 PF00289 Biotin carboxylase, N-terminal domain EP552_02540 PF02785 Biotin carboxylase C-terminal domain EP552_02540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP552_02550 PF04386 Stringent starvation protein B EP552_02555 PF13417 Glutathione S-transferase, N-terminal domain EP552_02555 PF00043 Glutathione S-transferase, C-terminal domain EP552_02560 PF00380 Ribosomal protein S9/S16 EP552_02565 PF00572 Ribosomal protein L13 EP552_02570 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EP552_02575 PF00398 Ribosomal RNA adenine dimethylase EP552_02580 PF00149 Calcineurin-like phosphoesterase EP552_02600 PF01926 50S ribosome-binding GTPase EP552_02600 PF13167 GTP-binding GTPase N-terminal EP552_02600 PF16360 GTP-binding GTPase Middle Region EP552_02610 PF13091 PLD-like domain EP552_02615 PF10518 TAT (twin-arginine translocation) pathway signal sequence EP552_02615 PF00149 Calcineurin-like phosphoesterase EP552_02620 PF01389 OmpA-like transmembrane domain EP552_02620 PF00691 OmpA family EP552_02630 PF00990 Diguanylate cyclase, GGDEF domain EP552_02630 PF17152 Periplasmic sensor domain EP552_02665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP552_02665 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_02675 PF00753 Metallo-beta-lactamase superfamily EP552_02675 PF04273 Putative phosphatase (DUF442) EP552_02680 PF00561 alpha/beta hydrolase fold EP552_02685 PF00085 Thioredoxin EP552_02690 PF03061 Thioesterase superfamily EP552_02700 PF04461 Protein of unknown function (DUF520) EP552_02710 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP552_02710 PF01266 FAD dependent oxidoreductase EP552_02720 PF03795 YCII-related domain EP552_02725 PF04279 Intracellular septation protein A EP552_02730 PF02811 PHP domain EP552_02735 PF01062 Bestrophin, RFP-TM, chloride channel EP552_02740 PF04002 RadC-like JAB domain EP552_02745 PF02441 Flavoprotein EP552_02745 PF04127 DNA / pantothenate metabolism flavoprotein EP552_02750 PF07549 SecD/SecF GG Motif EP552_02750 PF02355 Protein export membrane protein EP552_02755 PF07549 SecD/SecF GG Motif EP552_02755 PF02355 Protein export membrane protein EP552_02755 PF13721 SecD export protein N-terminal TM region EP552_02760 PF02699 Preprotein translocase subunit EP552_02765 PF01702 Queuine tRNA-ribosyltransferase EP552_02780 PF02547 Queuosine biosynthesis protein EP552_02790 PF07689 KaiB domain EP552_02790 PF00512 His Kinase A (phospho-acceptor) domain EP552_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_02795 PF08335 GlnD PII-uridylyltransferase EP552_02795 PF03710 Glutamate-ammonia ligase adenylyltransferase EP552_02800 PF01063 Amino-transferase class IV EP552_02815 PF01522 Polysaccharide deacetylase EP552_02820 PF00535 Glycosyl transferase family 2 EP552_02825 PF13439 Glycosyltransferase Family 4 EP552_02825 PF00534 Glycosyl transferases group 1 EP552_02845 PF00665 Integrase core domain EP552_02845 PF13936 Helix-turn-helix domain EP552_02860 PF13737 Transposase DDE domain EP552_02875 PF02938 GAD domain EP552_02875 PF01336 OB-fold nucleic acid binding domain EP552_02875 PF00152 tRNA synthetases class II (D, K and N) EP552_02885 PF07715 TonB-dependent Receptor Plug Domain EP552_02885 PF00593 TonB dependent receptor EP552_02905 PF06146 Phosphate-starvation-inducible E EP552_02910 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_02910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_02910 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP552_02910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_02915 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_02915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_02915 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP552_02915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_02925 PF00672 HAMP domain EP552_02925 PF00512 His Kinase A (phospho-acceptor) domain EP552_02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_02930 PF00486 Transcriptional regulatory protein, C terminal EP552_02930 PF00072 Response regulator receiver domain EP552_02935 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EP552_02950 PF03009 Glycerophosphoryl diester phosphodiesterase family EP552_02955 PF01923 Cobalamin adenosyltransferase EP552_02960 PF07715 TonB-dependent Receptor Plug Domain EP552_02960 PF00593 TonB dependent receptor EP552_02965 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EP552_02970 PF00291 Pyridoxal-phosphate dependent enzyme EP552_02995 PF00290 Tryptophan synthase alpha chain EP552_03000 PF01039 Carboxyl transferase domain EP552_03005 PF08245 Mur ligase middle domain EP552_03005 PF02875 Mur ligase family, glutamate ligase domain EP552_03020 PF00753 Metallo-beta-lactamase superfamily EP552_03025 PF00578 AhpC/TSA family EP552_03025 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP552_03030 PF07517 SecA DEAD-like domain EP552_03030 PF01043 SecA preprotein cross-linking domain EP552_03030 PF07516 SecA Wing and Scaffold domain EP552_03030 PF02810 SEC-C motif EP552_03040 PF07690 Major Facilitator Superfamily EP552_03040 PF00083 Sugar (and other) transporter EP552_03045 PF03006 Haemolysin-III related EP552_03070 PF00378 Enoyl-CoA hydratase/isomerase EP552_03070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP552_03070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP552_03075 PF00108 Thiolase, N-terminal domain EP552_03075 PF02803 Thiolase, C-terminal domain EP552_03080 PF12833 Helix-turn-helix domain EP552_03080 PF02311 AraC-like ligand binding domain EP552_03085 PF02515 CoA-transferase family III EP552_03090 PF04966 Carbohydrate-selective porin, OprB family EP552_03095 PF01011 PQQ enzyme repeat EP552_03100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP552_03100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP552_03110 PF00893 Small Multidrug Resistance protein EP552_03120 PF02803 Thiolase, C-terminal domain EP552_03120 PF00108 Thiolase, N-terminal domain EP552_03130 PF13505 Outer membrane protein beta-barrel domain EP552_03130 PF00691 OmpA family EP552_03135 PF01139 tRNA-splicing ligase RtcB EP552_03140 PF00324 Amino acid permease EP552_03145 PF05175 Methyltransferase small domain EP552_03145 PF08468 Methyltransferase small domain N-terminal EP552_03150 PF00860 Permease family EP552_03160 PF01741 Large-conductance mechanosensitive channel, MscL EP552_03175 PF06827 Zinc finger found in FPG and IleRS EP552_03175 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EP552_03175 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EP552_03180 PF02245 Methylpurine-DNA glycosylase (MPG) EP552_03190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP552_03195 PF03547 Membrane transport protein EP552_03205 PF13098 Thioredoxin-like domain EP552_03205 PF10411 Disulfide bond isomerase protein N-terminus EP552_03210 PF01571 Aminomethyltransferase folate-binding domain EP552_03220 PF04343 Protein of unknown function, DUF488 EP552_03225 PF08274 PhnA Zinc-Ribbon EP552_03225 PF03831 PhnA domain EP552_03230 PF07411 Domain of unknown function (DUF1508) EP552_03235 PF03129 Anticodon binding domain EP552_03235 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP552_03235 PF04073 Aminoacyl-tRNA editing domain EP552_03240 PF00873 AcrB/AcrD/AcrF family EP552_03255 PF00072 Response regulator receiver domain EP552_03260 PF00072 Response regulator receiver domain EP552_03265 PF01584 CheW-like domain EP552_03270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP552_03270 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EP552_03285 PF01546 Peptidase family M20/M25/M40 EP552_03285 PF07687 Peptidase dimerisation domain EP552_03290 PF08085 Entericidin EcnA/B family EP552_03300 PF04304 Protein of unknown function (DUF454) EP552_03305 PF17969 L,D-transpeptidase C-terminal domain EP552_03305 PF03734 L,D-transpeptidase catalytic domain EP552_03345 PF00258 Flavodoxin EP552_03345 PF00175 Oxidoreductase NAD-binding domain EP552_03345 PF00667 FAD binding domain EP552_03355 PF12805 FUSC-like inner membrane protein yccS EP552_03360 PF07690 Major Facilitator Superfamily EP552_03365 PF00881 Nitroreductase family EP552_03380 PF01235 Sodium:alanine symporter family EP552_03385 PF01734 Patatin-like phospholipase EP552_03390 PF13291 ACT domain EP552_03390 PF00291 Pyridoxal-phosphate dependent enzyme EP552_03395 PF05992 SbmA/BacA-like family EP552_03425 PF02637 GatB domain EP552_03425 PF02934 GatB/GatE catalytic domain EP552_03430 PF01425 Amidase EP552_03435 PF02686 Glu-tRNAGln amidotransferase C subunit EP552_03445 PF04085 rod shape-determining protein MreC EP552_03450 PF04093 rod shape-determining protein MreD EP552_03455 PF02545 Maf-like protein EP552_03460 PF00575 S1 RNA binding domain EP552_03460 PF10150 Ribonuclease E/G family EP552_03470 PF06974 Protein of unknown function (DUF1298) EP552_03470 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EP552_03475 PF01507 Phosphoadenosine phosphosulfate reductase family EP552_03490 PF02525 Flavodoxin-like fold EP552_03510 PF02673 Bacitracin resistance protein BacA EP552_03515 PF06719 AraC-type transcriptional regulator N-terminus EP552_03515 PF12833 Helix-turn-helix domain EP552_03520 PF14765 Polyketide synthase dehydratase EP552_03520 PF08240 Alcohol dehydrogenase GroES-like domain EP552_03520 PF00698 Acyl transferase domain EP552_03520 PF08659 KR domain EP552_03520 PF00550 Phosphopantetheine attachment site EP552_03520 PF02801 Beta-ketoacyl synthase, C-terminal domain EP552_03520 PF00109 Beta-ketoacyl synthase, N-terminal domain EP552_03520 PF16197 Ketoacyl-synthetase C-terminal extension EP552_03520 PF09277 Erythronolide synthase, docking EP552_03520 PF08990 Erythronolide synthase docking EP552_03525 PF01965 DJ-1/PfpI family EP552_03535 PF00324 Amino acid permease EP552_03540 PF04303 PrpF protein EP552_03545 PF00348 Polyprenyl synthetase EP552_03550 PF04237 YjbR EP552_03555 PF01145 SPFH domain / Band 7 family EP552_03565 PF01734 Patatin-like phospholipase EP552_03585 PF00884 Sulfatase EP552_03585 PF08019 Phosphoethanolamine transferase EptA/EptB EP552_03590 PF00072 Response regulator receiver domain EP552_03590 PF00486 Transcriptional regulatory protein, C terminal EP552_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_03595 PF00512 His Kinase A (phospho-acceptor) domain EP552_03595 PF08521 Two-component sensor kinase N-terminal EP552_03605 PF00909 Ammonium Transporter Family EP552_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_03615 PF03466 LysR substrate binding domain EP552_03635 PF00133 tRNA synthetases class I (I, L, M and V) EP552_03635 PF08264 Anticodon-binding domain of tRNA EP552_03635 PF10458 Valyl tRNA synthetase tRNA binding arm EP552_03655 PF01906 Putative heavy-metal-binding EP552_03660 PF01906 Putative heavy-metal-binding EP552_03665 PF02321 Outer membrane efflux protein EP552_03670 PF00873 AcrB/AcrD/AcrF family EP552_03675 PF00529 HlyD membrane-fusion protein of T1SS EP552_03675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_03680 PF01569 PAP2 superfamily EP552_03690 PF00348 Polyprenyl synthetase EP552_03700 PF00829 Ribosomal prokaryotic L21 protein EP552_03705 PF01016 Ribosomal L27 protein EP552_03710 PF03548 Outer membrane lipoprotein carrier protein LolA EP552_03720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP552_03720 PF02403 Seryl-tRNA synthetase N-terminal domain EP552_03725 PF10414 Sirohaem synthase dimerisation region EP552_03725 PF14824 Sirohaem biosynthesis protein central EP552_03725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP552_03730 PF00588 SpoU rRNA Methylase family EP552_03735 PF01638 HxlR-like helix-turn-helix EP552_03740 PF03358 NADPH-dependent FMN reductase EP552_03745 PF13520 Amino acid permease EP552_03750 PF00465 Iron-containing alcohol dehydrogenase EP552_03760 PF03099 Biotin/lipoate A/B protein ligase family EP552_03765 PF04359 Protein of unknown function (DUF493) EP552_03770 PF04539 Sigma-70 region 3 EP552_03770 PF04545 Sigma-70, region 4 EP552_03770 PF04542 Sigma-70 region 2 EP552_03770 PF03979 Sigma-70 factor, region 1.1 EP552_03770 PF04546 Sigma-70, non-essential region EP552_03770 PF00140 Sigma-70 factor, region 1.2 EP552_03800 PF00285 Citrate synthase, C-terminal domain EP552_03805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP552_03810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP552_03815 PF00890 FAD binding domain EP552_03815 PF02910 Fumarate reductase flavoprotein C-term EP552_03820 PF13085 2Fe-2S iron-sulfur cluster binding domain EP552_03835 PF02779 Transketolase, pyrimidine binding domain EP552_03835 PF16870 2-oxoglutarate dehydrogenase C-terminal EP552_03835 PF00676 Dehydrogenase E1 component EP552_03835 PF16078 2-oxoglutarate dehydrogenase N-terminus EP552_03840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP552_03840 PF02817 e3 binding domain EP552_03840 PF00364 Biotin-requiring enzyme EP552_03845 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_03845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP552_03850 PF00549 CoA-ligase EP552_03850 PF08442 ATP-grasp domain EP552_03855 PF00549 CoA-ligase EP552_03855 PF02629 CoA binding domain EP552_03860 PF00579 tRNA synthetases class I (W and Y) EP552_03865 PF05661 Protein of unknown function (DUF808) EP552_03870 PF04228 Putative neutral zinc metallopeptidase EP552_03875 PF00999 Sodium/hydrogen exchanger family EP552_03965 PF09587 Bacterial capsule synthesis protein PGA_cap EP552_03975 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP552_03980 PF00582 Universal stress protein family EP552_03985 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_03990 PF01272 Transcription elongation factor, GreA/GreB, C-term EP552_03990 PF03449 Transcription elongation factor, N-terminal EP552_03995 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP552_03995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP552_03995 PF02142 MGS-like domain EP552_04000 PF00117 Glutamine amidotransferase class-I EP552_04000 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EP552_04015 PF01985 CRS1 / YhbY (CRM) domain EP552_04020 PF01728 FtsJ-like methyltransferase EP552_04025 PF00004 ATPase family associated with various cellular activities (AAA) EP552_04025 PF17862 AAA+ lid domain EP552_04025 PF06480 FtsH Extracellular EP552_04025 PF01434 Peptidase family M41 EP552_04030 PF00809 Pterin binding enzyme EP552_04055 PF09423 PhoD-like phosphatase EP552_04055 PF16655 PhoD-like phosphatase, N-terminal domain EP552_04070 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EP552_04070 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EP552_04085 PF00083 Sugar (and other) transporter EP552_04090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP552_04090 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP552_04095 PF01266 FAD dependent oxidoreductase EP552_04095 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EP552_04100 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain EP552_04100 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain EP552_04105 PF00781 Diacylglycerol kinase catalytic domain EP552_04110 PF00149 Calcineurin-like phosphoesterase EP552_04120 PF00166 Chaperonin 10 Kd subunit EP552_04125 PF00118 TCP-1/cpn60 chaperonin family EP552_04130 PF01219 Prokaryotic diacylglycerol kinase EP552_04135 PF00753 Metallo-beta-lactamase superfamily EP552_04140 PF03009 Glycerophosphoryl diester phosphodiesterase family EP552_04145 PF00873 AcrB/AcrD/AcrF family EP552_04155 PF01435 Peptidase family M48 EP552_04160 PF01464 Transglycosylase SLT domain EP552_04170 PF01171 PP-loop family EP552_04180 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP552_04180 PF01464 Transglycosylase SLT domain EP552_04185 PF03449 Transcription elongation factor, N-terminal EP552_04185 PF01272 Transcription elongation factor, GreA/GreB, C-term EP552_04200 PF13193 AMP-binding enzyme C-terminal domain EP552_04200 PF00550 Phosphopantetheine attachment site EP552_04200 PF00668 Condensation domain EP552_04200 PF00501 AMP-binding enzyme EP552_04200 PF00975 Thioesterase domain EP552_04210 PF13936 Helix-turn-helix domain EP552_04210 PF00665 Integrase core domain EP552_04240 PF00881 Nitroreductase family EP552_04255 PF02595 Glycerate kinase family EP552_04260 PF00384 Molybdopterin oxidoreductase EP552_04265 PF02634 FdhD/NarQ family EP552_04270 PF06803 Protein of unknown function (DUF1232) EP552_04275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP552_04275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP552_04275 PF11890 Domain of unknown function (DUF3410) EP552_04280 PF00152 tRNA synthetases class II (D, K and N) EP552_04290 PF18073 Rubredoxin metal binding domain EP552_04295 PF00324 Amino acid permease EP552_04305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP552_04305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP552_04310 PF01678 Diaminopimelate epimerase EP552_04315 PF01810 LysE type translocator EP552_04320 PF02899 Phage integrase, N-terminal SAM-like domain EP552_04320 PF00589 Phage integrase family EP552_04325 PF01012 Electron transfer flavoprotein domain EP552_04330 PF01012 Electron transfer flavoprotein domain EP552_04330 PF00766 Electron transfer flavoprotein FAD-binding domain EP552_04335 PF00521 DNA gyrase/topoisomerase IV, subunit A EP552_04335 PF03989 DNA gyrase C-terminal domain, beta-propeller EP552_04350 PF00535 Glycosyl transferase family 2 EP552_04370 PF13533 Biotin-lipoyl like EP552_04380 PF00266 Aminotransferase class-V EP552_04390 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EP552_04400 PF12704 MacB-like periplasmic core domain EP552_04400 PF02687 FtsX-like permease family EP552_04405 PF00005 ABC transporter EP552_04410 PF00753 Metallo-beta-lactamase superfamily EP552_04410 PF13567 Domain of unknown function (DUF4131) EP552_04410 PF03772 Competence protein EP552_04420 PF01343 Peptidase family S49 EP552_04420 PF06965 Na+/H+ antiporter 1 EP552_04425 PF12697 Alpha/beta hydrolase family EP552_04430 PF00551 Formyl transferase EP552_04435 PF02769 AIR synthase related protein, C-terminal domain EP552_04435 PF00586 AIR synthase related protein, N-terminal domain EP552_04440 PF01594 AI-2E family transporter EP552_04445 PF00308 Bacterial dnaA protein EP552_04445 PF11638 DnaA N-terminal domain EP552_04445 PF08299 Bacterial dnaA protein helix-turn-helix EP552_04485 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP552_04485 PF00588 SpoU rRNA Methylase family EP552_04490 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP552_04500 PF00691 OmpA family EP552_04505 PF07676 WD40-like Beta Propeller Repeat EP552_04505 PF04052 TolB amino-terminal domain EP552_04515 PF02472 Biopolymer transport protein ExbD/TolR EP552_04520 PF01618 MotA/TolQ/ExbB proton channel family EP552_04525 PF03061 Thioesterase superfamily EP552_04530 PF01546 Peptidase family M20/M25/M40 EP552_04530 PF07687 Peptidase dimerisation domain EP552_04535 PF05496 Holliday junction DNA helicase RuvB P-loop domain EP552_04535 PF05491 RuvB C-terminal winged helix domain EP552_04535 PF17864 RuvB AAA lid domain EP552_04540 PF01330 RuvA N terminal domain EP552_04540 PF07499 RuvA, C-terminal domain EP552_04545 PF01966 HD domain EP552_04550 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EP552_04550 PF02769 AIR synthase related protein, C-terminal domain EP552_04550 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EP552_04555 PF07690 Major Facilitator Superfamily EP552_04560 PF01784 NIF3 (NGG1p interacting factor 3) EP552_04565 PF00378 Enoyl-CoA hydratase/isomerase EP552_04570 PF00293 NUDIX domain EP552_04570 PF01467 Cytidylyltransferase-like EP552_04580 PF00578 AhpC/TSA family EP552_04595 PF06508 Queuosine biosynthesis protein QueC EP552_04605 PF14602 Hexapeptide repeat of succinyl-transferase EP552_04605 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EP552_04605 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_04615 PF03466 LysR substrate binding domain EP552_04620 PF00005 ABC transporter EP552_04620 PF12857 TOBE-like domain EP552_04625 PF00528 Binding-protein-dependent transport system inner membrane component EP552_04630 PF00528 Binding-protein-dependent transport system inner membrane component EP552_04645 PF01063 Amino-transferase class IV EP552_04650 PF02618 YceG-like family EP552_04655 PF02223 Thymidylate kinase EP552_04665 PF00890 FAD binding domain EP552_04665 PF02910 Fumarate reductase flavoprotein C-term EP552_04670 PF13180 PDZ domain EP552_04680 PF06421 GTP-binding protein LepA C-terminus EP552_04680 PF03144 Elongation factor Tu domain 2 EP552_04680 PF00679 Elongation factor G C-terminus EP552_04680 PF00009 Elongation factor Tu GTP binding domain EP552_04685 PF10502 Signal peptidase, peptidase S26 EP552_04695 PF00035 Double-stranded RNA binding motif EP552_04695 PF14622 Ribonuclease-III-like EP552_04700 PF01926 50S ribosome-binding GTPase EP552_04700 PF07650 KH domain EP552_04710 PF11967 Recombination protein O N terminal EP552_04710 PF02565 Recombination protein O C terminal EP552_04715 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EP552_04720 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EP552_04725 PF00106 short chain dehydrogenase EP552_04765 PF00990 Diguanylate cyclase, GGDEF domain EP552_04765 PF17151 Periplasmic sensor domain EP552_04775 PF12344 Ultra-violet resistance protein B EP552_04775 PF17757 UvrB interaction domain EP552_04775 PF02151 UvrB/uvrC motif EP552_04775 PF04851 Type III restriction enzyme, res subunit EP552_04775 PF00271 Helicase conserved C-terminal domain EP552_04785 PF00892 EamA-like transporter family EP552_04790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP552_04790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP552_04815 PF01926 50S ribosome-binding GTPase EP552_04815 PF01018 GTP1/OBG EP552_04820 PF00696 Amino acid kinase family EP552_04820 PF01472 PUA domain EP552_04830 PF07759 Protein of unknown function (DUF1615) EP552_04835 PF01207 Dihydrouridine synthase (Dus) EP552_04840 PF03060 Nitronate monooxygenase EP552_04855 PF02350 UDP-N-acetylglucosamine 2-epimerase EP552_04885 PF03441 FAD binding domain of DNA photolyase EP552_04885 PF00875 DNA photolyase EP552_04890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP552_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_04900 PF07943 Penicillin-binding protein 5, C-terminal domain EP552_04900 PF00768 D-alanyl-D-alanine carboxypeptidase EP552_04910 PF03971 Monomeric isocitrate dehydrogenase EP552_04915 PF00849 RNA pseudouridylate synthase EP552_04920 PF00180 Isocitrate/isopropylmalate dehydrogenase EP552_04940 PF06779 Uncharacterised MFS-type transporter YbfB EP552_04945 PF03466 LysR substrate binding domain EP552_04945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_04955 PF02567 Phenazine biosynthesis-like protein EP552_04960 PF00675 Insulinase (Peptidase family M16) EP552_04960 PF05193 Peptidase M16 inactive domain EP552_04985 PF02581 Thiamine monophosphate synthase EP552_04990 PF00202 Aminotransferase class-III EP552_05000 PF00849 RNA pseudouridylate synthase EP552_05005 PF00271 Helicase conserved C-terminal domain EP552_05005 PF12137 RNA polymerase recycling family C-terminal EP552_05005 PF00176 SNF2 family N-terminal domain EP552_05005 PF18339 RapA N-terminal Tudor like domain 1 EP552_05005 PF18337 RapA N-terminal Tudor like domain EP552_05015 PF00440 Bacterial regulatory proteins, tetR family EP552_05020 PF00970 Oxidoreductase FAD-binding domain EP552_05020 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_05020 PF00175 Oxidoreductase NAD-binding domain EP552_05025 PF00487 Fatty acid desaturase EP552_05035 PF00440 Bacterial regulatory proteins, tetR family EP552_05035 PF17754 MftR C-terminal domain EP552_05045 PF00202 Aminotransferase class-III EP552_05050 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP552_05055 PF00171 Aldehyde dehydrogenase family EP552_05060 PF01037 Lrp/AsnC ligand binding domain EP552_05065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP552_05065 PF00205 Thiamine pyrophosphate enzyme, central domain EP552_05065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP552_05070 PF00324 Amino acid permease EP552_05075 PF12849 PBP superfamily domain EP552_05080 PF00528 Binding-protein-dependent transport system inner membrane component EP552_05085 PF00528 Binding-protein-dependent transport system inner membrane component EP552_05090 PF00005 ABC transporter EP552_05095 PF01343 Peptidase family S49 EP552_05095 PF08496 Peptidase family S49 N-terminal EP552_05110 PF08328 Adenylosuccinate lyase C-terminal EP552_05110 PF00206 Lyase EP552_05115 PF04356 Protein of unknown function (DUF489) EP552_05125 PF00293 NUDIX domain EP552_05125 PF13344 Haloacid dehalogenase-like hydrolase EP552_05130 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_05135 PF00768 D-alanyl-D-alanine carboxypeptidase EP552_05135 PF07943 Penicillin-binding protein 5, C-terminal domain EP552_05150 PF01975 Survival protein SurE EP552_05155 PF01476 LysM domain EP552_05155 PF01551 Peptidase family M23 EP552_05160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_05160 PF03466 LysR substrate binding domain EP552_05165 PF05362 Lon protease (S16) C-terminal proteolytic domain EP552_05165 PF13654 AAA domain EP552_05170 PF07690 Major Facilitator Superfamily EP552_05175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP552_05180 PF13593 SBF-like CPA transporter family (DUF4137) EP552_05185 PF01197 Ribosomal protein L31 EP552_05200 PF04055 Radical SAM superfamily EP552_05205 PF08207 Elongation factor P (EF-P) KOW-like domain EP552_05205 PF01132 Elongation factor P (EF-P) OB domain EP552_05205 PF09285 Elongation factor P, C-terminal EP552_05210 PF02554 Carbon starvation protein CstA EP552_05210 PF13722 5TM C-terminal transporter carbon starvation CstA EP552_05215 PF04328 Selenoprotein, putative EP552_05250 PF13556 PucR C-terminal helix-turn-helix domain EP552_05250 PF17853 GGDEF-like domain EP552_05250 PF06018 CodY GAF-like domain EP552_05265 PF00171 Aldehyde dehydrogenase family EP552_05270 PF00324 Amino acid permease EP552_05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_05275 PF03466 LysR substrate binding domain EP552_05280 PF02028 BCCT, betaine/carnitine/choline family transporter EP552_05285 PF02028 BCCT, betaine/carnitine/choline family transporter EP552_05290 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP552_05290 PF00355 Rieske [2Fe-2S] domain EP552_05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_05300 PF18113 Rubredoxin binding C-terminal domain EP552_05305 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP552_05305 PF01266 FAD dependent oxidoreductase EP552_05325 PF00892 EamA-like transporter family EP552_05335 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system EP552_05340 PF00083 Sugar (and other) transporter EP552_05345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP552_05345 PF13378 Enolase C-terminal domain-like EP552_05350 PF00109 Beta-ketoacyl synthase, N-terminal domain EP552_05350 PF14765 Polyketide synthase dehydratase EP552_05350 PF08659 KR domain EP552_05350 PF00550 Phosphopantetheine attachment site EP552_05350 PF08240 Alcohol dehydrogenase GroES-like domain EP552_05350 PF08990 Erythronolide synthase docking EP552_05350 PF00698 Acyl transferase domain EP552_05350 PF09277 Erythronolide synthase, docking EP552_05350 PF02801 Beta-ketoacyl synthase, C-terminal domain EP552_05350 PF16197 Ketoacyl-synthetase C-terminal extension EP552_05355 PF00440 Bacterial regulatory proteins, tetR family EP552_05375 PF17954 Quercetinase C-terminal cupin domain EP552_05375 PF02678 Pirin EP552_05385 PF13309 HTH domain EP552_05385 PF08348 YheO-like PAS domain EP552_05395 PF13193 AMP-binding enzyme C-terminal domain EP552_05395 PF00501 AMP-binding enzyme EP552_05395 PF00668 Condensation domain EP552_05395 PF00550 Phosphopantetheine attachment site EP552_05400 PF00975 Thioesterase domain EP552_05400 PF00550 Phosphopantetheine attachment site EP552_05400 PF00668 Condensation domain EP552_05400 PF13193 AMP-binding enzyme C-terminal domain EP552_05400 PF00501 AMP-binding enzyme EP552_05405 PF01032 FecCD transport family EP552_05410 PF01032 FecCD transport family EP552_05415 PF00005 ABC transporter EP552_05420 PF01497 Periplasmic binding protein EP552_05425 PF07715 TonB-dependent Receptor Plug Domain EP552_05425 PF00593 TonB dependent receptor EP552_05440 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP552_05445 PF00668 Condensation domain EP552_05445 PF00501 AMP-binding enzyme EP552_05445 PF00550 Phosphopantetheine attachment site EP552_05450 PF00501 AMP-binding enzyme EP552_05450 PF13193 AMP-binding enzyme C-terminal domain EP552_05455 PF00857 Isochorismatase family EP552_05455 PF00550 Phosphopantetheine attachment site EP552_05460 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP552_05470 PF00005 ABC transporter EP552_05470 PF00664 ABC transporter transmembrane region EP552_05475 PF00005 ABC transporter EP552_05475 PF00664 ABC transporter transmembrane region EP552_05480 PF00975 Thioesterase domain EP552_05490 PF00425 chorismate binding enzyme EP552_05500 PF01208 Uroporphyrinogen decarboxylase (URO-D) EP552_05505 PF05675 Protein of unknown function (DUF817) EP552_05520 PF00144 Beta-lactamase EP552_05535 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_05535 PF01799 [2Fe-2S] binding domain EP552_05540 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP552_05540 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP552_05555 PF00218 Indole-3-glycerol phosphate synthase EP552_05560 PF02885 Glycosyl transferase family, helical bundle domain EP552_05560 PF00591 Glycosyl transferase family, a/b domain EP552_05565 PF07715 TonB-dependent Receptor Plug Domain EP552_05565 PF00593 TonB dependent receptor EP552_05570 PF01433 Peptidase family M1 domain EP552_05570 PF11838 ERAP1-like C-terminal domain EP552_05575 PF00117 Glutamine amidotransferase class-I EP552_05790 PF13005 zinc-finger binding domain of transposase IS66 EP552_05790 PF13007 Transposase C of IS166 homeodomain EP552_05790 PF13817 IS66 C-terminal element EP552_05790 PF03050 Transposase IS66 family EP552_05870 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP552_05880 PF13737 Transposase DDE domain EP552_05885 PF00884 Sulfatase EP552_05885 PF08019 Phosphoethanolamine transferase EptA/EptB EP552_05920 PF05195 Aminopeptidase P, N-terminal domain EP552_05920 PF00557 Metallopeptidase family M24 EP552_05925 PF01494 FAD binding domain EP552_05930 PF01494 FAD binding domain EP552_05940 PF13411 MerR HTH family regulatory protein EP552_05950 PF01810 LysE type translocator EP552_05955 PF03466 LysR substrate binding domain EP552_05955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_05965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP552_05970 PF02021 Uncharacterised protein family UPF0102 EP552_05975 PF04972 BON domain EP552_05985 PF00293 NUDIX domain EP552_05985 PF09297 NADH pyrophosphatase zinc ribbon domain EP552_05995 PF00929 Exonuclease EP552_06000 PF01476 LysM domain EP552_06000 PF01464 Transglycosylase SLT domain EP552_06000 PF01476 LysM domain EP552_06000 PF01464 Transglycosylase SLT domain EP552_06005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EP552_06010 PF00528 Binding-protein-dependent transport system inner membrane component EP552_06015 PF00528 Binding-protein-dependent transport system inner membrane component EP552_06015 PF12911 N-terminal TM domain of oligopeptide transport permease C EP552_06020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP552_06020 PF00005 ABC transporter EP552_06025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP552_06025 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_06030 PF00593 TonB dependent receptor EP552_06030 PF07715 TonB-dependent Receptor Plug Domain EP552_06040 PF00929 Exonuclease EP552_06045 PF01979 Amidohydrolase family EP552_06050 PF00990 Diguanylate cyclase, GGDEF domain EP552_06050 PF01590 GAF domain EP552_06050 PF00360 Phytochrome region EP552_06050 PF00563 EAL domain EP552_06055 PF00764 Arginosuccinate synthase EP552_06060 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_06060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP552_06075 PF05987 Bacterial protein of unknown function (DUF898) EP552_06080 PF03180 NLPA lipoprotein EP552_06095 PF16671 Actin cross-linking domain EP552_06095 PF04717 Type VI secretion system, phage-baseplate injector EP552_06105 PF13610 DDE domain EP552_06115 PF00440 Bacterial regulatory proteins, tetR family EP552_06115 PF17932 Tetracyclin repressor-like, C-terminal domain EP552_06120 PF02678 Pirin EP552_06120 PF17954 Quercetinase C-terminal cupin domain EP552_06130 PF00665 Integrase core domain EP552_06130 PF13936 Helix-turn-helix domain EP552_06135 PF00106 short chain dehydrogenase EP552_06140 PF00743 Flavin-binding monooxygenase-like EP552_06150 PF00860 Permease family EP552_06155 PF00962 Adenosine/AMP deaminase EP552_06160 PF01292 Prokaryotic cytochrome b561 EP552_06170 PF01351 Ribonuclease HII EP552_06175 PF02599 Global regulator protein family EP552_06180 PF00696 Amino acid kinase family EP552_06180 PF01842 ACT domain EP552_06180 PF13840 ACT domain EP552_06185 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP552_06185 PF01411 tRNA synthetases class II (A) EP552_06185 PF02272 DHHA1 domain EP552_06190 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP552_06190 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP552_06195 PF13393 Histidyl-tRNA synthetase EP552_06200 PF00709 Adenylosuccinate synthetase EP552_06215 PF00248 Aldo/keto reductase family EP552_06220 PF00027 Cyclic nucleotide-binding domain EP552_06220 PF13545 Crp-like helix-turn-helix domain EP552_06225 PF02566 OsmC-like protein EP552_06240 PF00004 ATPase family associated with various cellular activities (AAA) EP552_06240 PF17871 AAA lid domain EP552_06240 PF02861 Clp amino terminal domain, pathogenicity island component EP552_06240 PF10431 C-terminal, D2-small domain, of ClpB protein EP552_06240 PF07724 AAA domain (Cdc48 subfamily) EP552_06255 PF01170 Putative RNA methylase family UPF0020 EP552_06255 PF02926 THUMP domain EP552_06255 PF10672 S-adenosylmethionine-dependent methyltransferase EP552_06265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP552_06265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP552_06270 PF01979 Amidohydrolase family EP552_06275 PF00691 OmpA family EP552_06275 PF13488 Glycine zipper EP552_06285 PF13417 Glutathione S-transferase, N-terminal domain EP552_06285 PF00043 Glutathione S-transferase, C-terminal domain EP552_06290 PF02390 Putative methyltransferase EP552_06300 PF02798 Glutathione S-transferase, N-terminal domain EP552_06300 PF00043 Glutathione S-transferase, C-terminal domain EP552_06310 PF13192 Thioredoxin domain EP552_06310 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_06330 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP552_06330 PF00578 AhpC/TSA family EP552_06335 PF11898 Domain of unknown function (DUF3418) EP552_06335 PF04408 Helicase associated domain (HA2) EP552_06335 PF00271 Helicase conserved C-terminal domain EP552_06335 PF00270 DEAD/DEAH box helicase EP552_06335 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EP552_06340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP552_06340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP552_06350 PF07690 Major Facilitator Superfamily EP552_06355 PF03594 Benzoate membrane transport protein EP552_06360 PF00106 short chain dehydrogenase EP552_06365 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_06365 PF00970 Oxidoreductase FAD-binding domain EP552_06365 PF00175 Oxidoreductase NAD-binding domain EP552_06370 PF00866 Ring hydroxylating beta subunit EP552_06375 PF00355 Rieske [2Fe-2S] domain EP552_06375 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP552_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_06380 PF03466 LysR substrate binding domain EP552_06390 PF00403 Heavy-metal-associated domain EP552_06395 PF00376 MerR family regulatory protein EP552_06395 PF09278 MerR, DNA binding EP552_06415 PF13737 Transposase DDE domain EP552_06445 PF13742 OB-fold nucleic acid binding domain EP552_06445 PF02601 Exonuclease VII, large subunit EP552_06480 PF01810 LysE type translocator EP552_06485 PF00313 'Cold-shock' DNA-binding domain EP552_06495 PF03807 NADP oxidoreductase coenzyme F420-dependent EP552_06495 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP552_06525 PF07690 Major Facilitator Superfamily EP552_06530 PF01638 HxlR-like helix-turn-helix EP552_06545 PF13936 Helix-turn-helix domain EP552_06545 PF00665 Integrase core domain EP552_06550 PF01636 Phosphotransferase enzyme family EP552_06555 PF13936 Helix-turn-helix domain EP552_06555 PF00665 Integrase core domain EP552_06575 PF09190 DALR domain EP552_06575 PF01406 tRNA synthetases class I (C) catalytic domain EP552_06580 PF00571 CBS domain EP552_06580 PF01380 SIS domain EP552_06595 PF03968 OstA-like protein EP552_06600 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP552_06600 PF00005 ABC transporter EP552_06605 PF02321 Outer membrane efflux protein EP552_06610 PF00664 ABC transporter transmembrane region EP552_06610 PF00005 ABC transporter EP552_06610 PF03412 Peptidase C39 family EP552_06620 PF01205 Uncharacterized protein family UPF0029 EP552_06625 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_06635 PF01596 O-methyltransferase EP552_06645 PF00037 4Fe-4S binding domain EP552_06645 PF11953 Domain of unknown function (DUF3470) EP552_06655 PF05188 MutS domain II EP552_06655 PF00488 MutS domain V EP552_06655 PF05190 MutS family domain IV EP552_06655 PF05192 MutS domain III EP552_06655 PF01624 MutS domain I EP552_06660 PF01037 Lrp/AsnC ligand binding domain EP552_06665 PF00892 EamA-like transporter family EP552_06670 PF00990 Diguanylate cyclase, GGDEF domain EP552_06670 PF03707 Bacterial signalling protein N terminal repeat EP552_06670 PF00563 EAL domain EP552_06675 PF03279 Bacterial lipid A biosynthesis acyltransferase EP552_06690 PF07690 Major Facilitator Superfamily EP552_06710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP552_06710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP552_06730 PF13419 Haloacid dehalogenase-like hydrolase EP552_06750 PF03050 Transposase IS66 family EP552_06750 PF13005 zinc-finger binding domain of transposase IS66 EP552_06750 PF13817 IS66 C-terminal element EP552_06750 PF13007 Transposase C of IS166 homeodomain EP552_06755 PF04717 Type VI secretion system, phage-baseplate injector EP552_06755 PF16671 Actin cross-linking domain EP552_06760 PF14220 Domain of unknown function (DUF4329) EP552_06760 PF05593 RHS Repeat EP552_06760 PF03527 RHS protein EP552_06775 PF03466 LysR substrate binding domain EP552_06775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_06780 PF01566 Natural resistance-associated macrophage protein EP552_06785 PF03746 LamB/YcsF family EP552_06790 PF07286 Protein of unknown function (DUF1445) EP552_06800 PF02785 Biotin carboxylase C-terminal domain EP552_06800 PF00289 Biotin carboxylase, N-terminal domain EP552_06800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP552_06800 PF00364 Biotin-requiring enzyme EP552_06805 PF00654 Voltage gated chloride channel EP552_06830 PF00440 Bacterial regulatory proteins, tetR family EP552_06840 PF08240 Alcohol dehydrogenase GroES-like domain EP552_06840 PF13823 Alcohol dehydrogenase GroES-associated EP552_06840 PF00107 Zinc-binding dehydrogenase EP552_06865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP552_06865 PF02785 Biotin carboxylase C-terminal domain EP552_06865 PF00289 Biotin carboxylase, N-terminal domain EP552_06870 PF02525 Flavodoxin-like fold EP552_06890 PF08753 NikR C terminal nickel binding domain EP552_06890 PF01402 Ribbon-helix-helix protein, copG family EP552_06895 PF01425 Amidase EP552_06900 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP552_06905 PF00005 ABC transporter EP552_06980 PF00691 OmpA family EP552_06980 PF01389 OmpA-like transmembrane domain EP552_06990 PF00004 ATPase family associated with various cellular activities (AAA) EP552_06990 PF10431 C-terminal, D2-small domain, of ClpB protein EP552_06990 PF17871 AAA lid domain EP552_06990 PF07724 AAA domain (Cdc48 subfamily) EP552_07020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07020 PF03466 LysR substrate binding domain EP552_07030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP552_07035 PF07690 Major Facilitator Superfamily EP552_07050 PF02677 Epoxyqueuosine reductase QueH EP552_07060 PF09278 MerR, DNA binding EP552_07060 PF00376 MerR family regulatory protein EP552_07075 PF00701 Dihydrodipicolinate synthetase family EP552_07085 PF00392 Bacterial regulatory proteins, gntR family EP552_07090 PF05544 Proline racemase EP552_07095 PF01266 FAD dependent oxidoreductase EP552_07105 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_07105 PF04324 BFD-like [2Fe-2S] binding domain EP552_07115 PF00083 Sugar (and other) transporter EP552_07120 PF00171 Aldehyde dehydrogenase family EP552_07125 PF13520 Amino acid permease EP552_07130 PF03313 Serine dehydratase alpha chain EP552_07130 PF03315 Serine dehydratase beta chain EP552_07135 PF00171 Aldehyde dehydrogenase family EP552_07135 PF01575 MaoC like domain EP552_07140 PF05138 Phenylacetic acid catabolic protein EP552_07145 PF06243 Phenylacetic acid degradation B EP552_07150 PF05138 Phenylacetic acid catabolic protein EP552_07155 PF01883 Iron-sulfur cluster assembly protein EP552_07160 PF00970 Oxidoreductase FAD-binding domain EP552_07160 PF00175 Oxidoreductase NAD-binding domain EP552_07160 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_07165 PF00378 Enoyl-CoA hydratase/isomerase EP552_07170 PF00378 Enoyl-CoA hydratase/isomerase EP552_07175 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP552_07175 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP552_07175 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP552_07180 PF00108 Thiolase, N-terminal domain EP552_07180 PF02803 Thiolase, C-terminal domain EP552_07185 PF14535 AMP-binding enzyme C-terminal domain EP552_07185 PF00501 AMP-binding enzyme EP552_07190 PF08223 PaaX-like protein C-terminal domain EP552_07190 PF07848 PaaX-like protein EP552_07195 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_07200 PF03061 Thioesterase superfamily EP552_07210 PF04851 Type III restriction enzyme, res subunit EP552_07210 PF02151 UvrB/uvrC motif EP552_07210 PF12344 Ultra-violet resistance protein B EP552_07210 PF17757 UvrB interaction domain EP552_07210 PF00271 Helicase conserved C-terminal domain EP552_07250 PF00313 'Cold-shock' DNA-binding domain EP552_07260 PF06719 AraC-type transcriptional regulator N-terminus EP552_07260 PF12833 Helix-turn-helix domain EP552_07270 PF13610 DDE domain EP552_07275 PF00239 Resolvase, N terminal domain EP552_07275 PF02796 Helix-turn-helix domain of resolvase EP552_07285 PF13495 Phage integrase, N-terminal SAM-like domain EP552_07285 PF00589 Phage integrase family EP552_07290 PF10706 Aminoglycoside-2''-adenylyltransferase EP552_07295 PF01909 Nucleotidyltransferase domain EP552_07295 PF13427 Domain of unknown function (DUF4111) EP552_07300 PF00893 Small Multidrug Resistance protein EP552_07305 PF00809 Pterin binding enzyme EP552_07320 PF01695 IstB-like ATP binding protein EP552_07330 PF13610 DDE domain EP552_07340 PF09339 IclR helix-turn-helix domain EP552_07340 PF01614 Bacterial transcriptional regulator EP552_07345 PF01494 FAD binding domain EP552_07350 PF00392 Bacterial regulatory proteins, gntR family EP552_07350 PF07702 UTRA domain EP552_07360 PF00005 ABC transporter EP552_07360 PF08402 TOBE domain EP552_07365 PF00528 Binding-protein-dependent transport system inner membrane component EP552_07370 PF01266 FAD dependent oxidoreductase EP552_07375 PF00266 Aminotransferase class-V EP552_07380 PF13419 Haloacid dehalogenase-like hydrolase EP552_07385 PF07690 Major Facilitator Superfamily EP552_07390 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_07390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_07390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_07395 PF02515 CoA-transferase family III EP552_07400 PF09339 IclR helix-turn-helix domain EP552_07405 PF00378 Enoyl-CoA hydratase/isomerase EP552_07410 PF03060 Nitronate monooxygenase EP552_07415 PF07690 Major Facilitator Superfamily EP552_07420 PF09339 IclR helix-turn-helix domain EP552_07425 PF02803 Thiolase, C-terminal domain EP552_07425 PF00108 Thiolase, N-terminal domain EP552_07430 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP552_07430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP552_07430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP552_07440 PF00378 Enoyl-CoA hydratase/isomerase EP552_07445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_07445 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_07445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_07450 PF07690 Major Facilitator Superfamily EP552_07455 PF01144 Coenzyme A transferase EP552_07460 PF01144 Coenzyme A transferase EP552_07470 PF07690 Major Facilitator Superfamily EP552_07480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_07480 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_07480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_07480 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP552_07495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07495 PF03466 LysR substrate binding domain EP552_07500 PF00682 HMGL-like EP552_07505 PF02785 Biotin carboxylase C-terminal domain EP552_07505 PF00289 Biotin carboxylase, N-terminal domain EP552_07505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP552_07505 PF00364 Biotin-requiring enzyme EP552_07510 PF00378 Enoyl-CoA hydratase/isomerase EP552_07515 PF01039 Carboxyl transferase domain EP552_07520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_07520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_07520 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_07525 PF00440 Bacterial regulatory proteins, tetR family EP552_07530 PF13193 AMP-binding enzyme C-terminal domain EP552_07530 PF00501 AMP-binding enzyme EP552_07550 PF03466 LysR substrate binding domain EP552_07550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07580 PF02464 Competence-damaged protein EP552_07580 PF18146 Damage-inducible protein CinA KH domain EP552_07580 PF00994 Probable molybdopterin binding domain EP552_07590 PF06628 Catalase-related immune-responsive EP552_07590 PF00199 Catalase EP552_07590 PF18011 C-terminal domain found in long catalases EP552_07615 PF00717 Peptidase S24-like EP552_07625 PF01037 Lrp/AsnC ligand binding domain EP552_07625 PF13404 AsnC-type helix-turn-helix domain EP552_07635 PF00512 His Kinase A (phospho-acceptor) domain EP552_07635 PF09308 LuxQ, periplasmic EP552_07635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_07635 PF00072 Response regulator receiver domain EP552_07640 PF00072 Response regulator receiver domain EP552_07655 PF00528 Binding-protein-dependent transport system inner membrane component EP552_07660 PF00528 Binding-protein-dependent transport system inner membrane component EP552_07665 PF00005 ABC transporter EP552_07670 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP552_07675 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP552_07685 PF03466 LysR substrate binding domain EP552_07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07690 PF01810 LysE type translocator EP552_07700 PF00266 Aminotransferase class-V EP552_07710 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_07715 PF00581 Rhodanese-like domain EP552_07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07725 PF03466 LysR substrate binding domain EP552_07730 PF02798 Glutathione S-transferase, N-terminal domain EP552_07735 PF02798 Glutathione S-transferase, N-terminal domain EP552_07735 PF14834 Glutathione S-transferase, C-terminal domain EP552_07740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07740 PF03466 LysR substrate binding domain EP552_07745 PF03788 LrgA family EP552_07750 PF04172 LrgB-like family EP552_07755 PF00155 Aminotransferase class I and II EP552_07755 PF00392 Bacterial regulatory proteins, gntR family EP552_07770 PF07690 Major Facilitator Superfamily EP552_07775 PF16957 Malonate decarboxylase, alpha subunit, transporter EP552_07780 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase EP552_07785 PF06857 Malonate decarboxylase delta subunit (MdcD) EP552_07790 PF01039 Carboxyl transferase domain EP552_07800 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG EP552_07805 PF00698 Acyl transferase domain EP552_07820 PF03466 LysR substrate binding domain EP552_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07825 PF00155 Aminotransferase class I and II EP552_07825 PF00392 Bacterial regulatory proteins, gntR family EP552_07835 PF02322 Cytochrome bd terminal oxidase subunit II EP552_07840 PF01654 Cytochrome bd terminal oxidase subunit I EP552_07855 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP552_07855 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_07855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_07860 PF00296 Luciferase-like monooxygenase EP552_07865 PF00083 Sugar (and other) transporter EP552_07885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP552_07890 PF00005 ABC transporter EP552_07895 PF00528 Binding-protein-dependent transport system inner membrane component EP552_07900 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP552_07905 PF01177 Asp/Glu/Hydantoin racemase EP552_07910 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP552_07920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07920 PF03466 LysR substrate binding domain EP552_07930 PF01979 Amidohydrolase family EP552_07930 PF13382 Adenine deaminase C-terminal domain EP552_07940 PF03960 ArsC family EP552_07945 PF01022 Bacterial regulatory protein, arsR family EP552_07950 PF01758 Sodium Bile acid symporter family EP552_07955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_07955 PF03466 LysR substrate binding domain EP552_07970 PF13192 Thioredoxin domain EP552_07970 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_07985 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_07990 PF00588 SpoU rRNA Methylase family EP552_07995 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP552_07995 PF01336 OB-fold nucleic acid binding domain EP552_07995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP552_07995 PF02811 PHP domain EP552_07995 PF14579 Helix-hairpin-helix motif EP552_08000 PF00710 Asparaginase, N-terminal EP552_08000 PF17763 Glutaminase/Asparaginase C-terminal domain EP552_08005 PF00375 Sodium:dicarboxylate symporter family EP552_08010 PF13737 Transposase DDE domain EP552_08015 PF00155 Aminotransferase class I and II EP552_08020 PF01641 SelR domain EP552_08025 PF00255 Glutathione peroxidase EP552_08030 PF12852 Cupin EP552_08030 PF12833 Helix-turn-helix domain EP552_08040 PF00155 Aminotransferase class I and II EP552_08045 PF08335 GlnD PII-uridylyltransferase EP552_08045 PF01966 HD domain EP552_08045 PF01909 Nucleotidyltransferase domain EP552_08050 PF02222 ATP-grasp domain EP552_08060 PF05437 Branched-chain amino acid transport protein (AzlD) EP552_08065 PF03591 AzlC protein EP552_08090 PF06071 Protein of unknown function (DUF933) EP552_08090 PF01926 50S ribosome-binding GTPase EP552_08095 PF00528 Binding-protein-dependent transport system inner membrane component EP552_08100 PF00005 ABC transporter EP552_08100 PF09383 NIL domain EP552_08105 PF03180 NLPA lipoprotein EP552_08110 PF03180 NLPA lipoprotein EP552_08115 PF00296 Luciferase-like monooxygenase EP552_08125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_08125 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP552_08140 PF00528 Binding-protein-dependent transport system inner membrane component EP552_08145 PF00528 Binding-protein-dependent transport system inner membrane component EP552_08150 PF00005 ABC transporter EP552_08160 PF01037 Lrp/AsnC ligand binding domain EP552_08165 PF01709 Transcriptional regulator EP552_08175 PF00440 Bacterial regulatory proteins, tetR family EP552_08195 PF13737 Transposase DDE domain EP552_08205 PF03466 LysR substrate binding domain EP552_08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_08215 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP552_08225 PF00892 EamA-like transporter family EP552_08255 PF00577 Outer membrane usher protein EP552_08255 PF13953 PapC C-terminal domain EP552_08255 PF13954 PapC N-terminal domain EP552_08260 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP552_08260 PF02753 Pili assembly chaperone PapD, C-terminal domain EP552_08265 PF16970 Type-1 fimbrial protein, A EP552_08280 PF04055 Radical SAM superfamily EP552_08280 PF06968 Biotin and Thiamin Synthesis associated domain EP552_08285 PF08331 Domain of unknown function (DUF1730) EP552_08290 PF01256 Carbohydrate kinase EP552_08290 PF03853 YjeF-related protein N-terminus EP552_08295 PF02075 Crossover junction endodeoxyribonuclease RuvC EP552_08310 PF00905 Penicillin binding protein transpeptidase domain EP552_08335 PF02773 S-adenosylmethionine synthetase, C-terminal domain EP552_08335 PF00438 S-adenosylmethionine synthetase, N-terminal domain EP552_08335 PF02772 S-adenosylmethionine synthetase, central domain EP552_08340 PF02780 Transketolase, C-terminal domain EP552_08340 PF00456 Transketolase, thiamine diphosphate binding domain EP552_08340 PF02779 Transketolase, pyrimidine binding domain EP552_08350 PF04264 YceI-like domain EP552_08360 PF09992 Phosphodiester glycosidase EP552_08370 PF05958 tRNA (Uracil-5-)-methyltransferase EP552_08375 PF04229 GrpB protein EP552_08380 PF01619 Proline dehydrogenase EP552_08380 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EP552_08380 PF00171 Aldehyde dehydrogenase family EP552_08380 PF14850 DNA-binding domain of Proline dehydrogenase EP552_08385 PF01037 Lrp/AsnC ligand binding domain EP552_08390 PF00474 Sodium:solute symporter family EP552_08395 PF02146 Sir2 family EP552_08400 PF01597 Glycine cleavage H-protein EP552_08405 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP552_08405 PF12833 Helix-turn-helix domain EP552_08415 PF00005 ABC transporter EP552_08415 PF00664 ABC transporter transmembrane region EP552_08420 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EP552_08425 PF06912 Protein of unknown function (DUF1275) EP552_08430 PF00375 Sodium:dicarboxylate symporter family EP552_08445 PF08007 Cupin superfamily protein EP552_08450 PF02545 Maf-like protein EP552_08460 PF00162 Phosphoglycerate kinase EP552_08470 PF01116 Fructose-bisphosphate aldolase class-II EP552_08475 PF09312 SurA N-terminal domain EP552_08475 PF00639 PPIC-type PPIASE domain EP552_08480 PF04453 LPS transport system D EP552_08480 PF03968 OstA-like protein EP552_08485 PF01636 Phosphotransferase enzyme family EP552_08490 PF00483 Nucleotidyl transferase EP552_08495 PF02527 rRNA small subunit methyltransferase G EP552_08500 PF13614 AAA domain EP552_08505 PF17762 HTH domain found in ParB protein EP552_08505 PF02195 ParB-like nuclease domain EP552_08510 PF01618 MotA/TolQ/ExbB proton channel family EP552_08520 PF00664 ABC transporter transmembrane region EP552_08520 PF00005 ABC transporter EP552_08525 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EP552_08530 PF02348 Cytidylyltransferase EP552_08535 PF09115 DNA polymerase III, delta subunit, C terminal EP552_08545 PF01026 TatD related DNase EP552_08560 PF07963 Prokaryotic N-terminal methylation motif EP552_08560 PF02501 Type II secretion system (T2SS), protein I EP552_08565 PF07963 Prokaryotic N-terminal methylation motif EP552_08565 PF11612 Type II secretion system (T2SS), protein J EP552_08570 PF03934 Type II secretion system (T2SS), protein K EP552_08580 PF03167 Uracil DNA glycosylase superfamily EP552_08590 PF14437 MafB19-like deaminase EP552_08600 PF02224 Cytidylate kinase EP552_08605 PF00575 S1 RNA binding domain EP552_08610 PF00216 Bacterial DNA-binding protein EP552_08620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EP552_08630 PF00743 Flavin-binding monooxygenase-like EP552_08640 PF03969 AFG1-like ATPase EP552_08645 PF02899 Phage integrase, N-terminal SAM-like domain EP552_08645 PF00589 Phage integrase family EP552_08710 PF00772 DnaB-like helicase N terminal domain EP552_08710 PF03796 DnaB-like helicase C terminal domain EP552_08785 PF04860 Phage portal protein EP552_08840 PF01464 Transglycosylase SLT domain EP552_08840 PF01551 Peptidase family M23 EP552_08840 PF10145 Phage-related minor tail protein EP552_08895 PF01274 Malate synthase EP552_08905 PF02472 Biopolymer transport protein ExbD/TolR EP552_08910 PF02472 Biopolymer transport protein ExbD/TolR EP552_08915 PF01618 MotA/TolQ/ExbB proton channel family EP552_08925 PF07715 TonB-dependent Receptor Plug Domain EP552_08925 PF00593 TonB dependent receptor EP552_08945 PF01432 Peptidase family M3 EP552_08950 PF00528 Binding-protein-dependent transport system inner membrane component EP552_08955 PF00528 Binding-protein-dependent transport system inner membrane component EP552_08960 PF00005 ABC transporter EP552_08960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP552_08975 PF00459 Inositol monophosphatase family EP552_08985 PF01649 Ribosomal protein S20 EP552_08990 PF13460 NAD(P)H-binding EP552_08995 PF03737 Aldolase/RraA EP552_09015 PF02559 CarD-like/TRCF domain EP552_09015 PF17757 UvrB interaction domain EP552_09015 PF03461 TRCF domain EP552_09015 PF00270 DEAD/DEAH box helicase EP552_09015 PF00271 Helicase conserved C-terminal domain EP552_09025 PF00211 Adenylate and Guanylate cyclase catalytic domain EP552_09030 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_09035 PF00012 Hsp70 protein EP552_09040 PF00226 DnaJ domain EP552_09040 PF07743 HSCB C-terminal oligomerisation domain EP552_09045 PF01521 Iron-sulphur cluster biosynthesis EP552_09050 PF01592 NifU-like N terminal domain EP552_09055 PF00266 Aminotransferase class-V EP552_09060 PF02082 Transcriptional regulator EP552_09075 PF00216 Bacterial DNA-binding protein EP552_09080 PF00639 PPIC-type PPIASE domain EP552_09080 PF09312 SurA N-terminal domain EP552_09085 PF12833 Helix-turn-helix domain EP552_09085 PF12852 Cupin EP552_09090 PF00487 Fatty acid desaturase EP552_09095 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_09095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_09095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_09100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_09100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_09100 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_09105 PF03109 ABC1 family EP552_09115 PF04073 Aminoacyl-tRNA editing domain EP552_09120 PF04183 IucA / IucC family EP552_09120 PF06276 Ferric iron reductase FhuF-like transporter EP552_09125 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP552_09130 PF07690 Major Facilitator Superfamily EP552_09135 PF06276 Ferric iron reductase FhuF-like transporter EP552_09135 PF04183 IucA / IucC family EP552_09140 PF04183 IucA / IucC family EP552_09140 PF06276 Ferric iron reductase FhuF-like transporter EP552_09155 PF00593 TonB dependent receptor EP552_09155 PF07715 TonB-dependent Receptor Plug Domain EP552_09195 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EP552_09200 PF02277 Phosphoribosyltransferase EP552_09215 PF02654 Cobalamin-5-phosphate synthase EP552_09220 PF00793 DAHP synthetase I family EP552_09225 PF01925 Sulfite exporter TauE/SafE EP552_09245 PF07715 TonB-dependent Receptor Plug Domain EP552_09245 PF00593 TonB dependent receptor EP552_09250 PF02684 Lipid-A-disaccharide synthetase EP552_09260 PF13007 Transposase C of IS166 homeodomain EP552_09260 PF03050 Transposase IS66 family EP552_09260 PF13005 zinc-finger binding domain of transposase IS66 EP552_09260 PF13817 IS66 C-terminal element EP552_09280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_09285 PF00005 ABC transporter EP552_09320 PF01230 HIT domain EP552_09350 PF08241 Methyltransferase domain EP552_09355 PF00561 alpha/beta hydrolase fold EP552_09360 PF01053 Cys/Met metabolism PLP-dependent enzyme EP552_09370 PF02575 YbaB/EbfC DNA-binding family EP552_09375 PF02132 RecR protein EP552_09375 PF13662 Toprim domain EP552_09380 PF01612 3'-5' exonuclease EP552_09380 PF00570 HRDC domain EP552_09400 PF05166 YcgL domain EP552_09410 PF01434 Peptidase family M41 EP552_09410 PF00004 ATPase family associated with various cellular activities (AAA) EP552_09410 PF17862 AAA+ lid domain EP552_09420 PF00291 Pyridoxal-phosphate dependent enzyme EP552_09425 PF05175 Methyltransferase small domain EP552_09430 PF01264 Chorismate synthase EP552_09450 PF04055 Radical SAM superfamily EP552_09455 PF00676 Dehydrogenase E1 component EP552_09460 PF02780 Transketolase, C-terminal domain EP552_09460 PF02779 Transketolase, pyrimidine binding domain EP552_09465 PF00364 Biotin-requiring enzyme EP552_09465 PF02817 e3 binding domain EP552_09465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP552_09470 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_09470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP552_09475 PF00106 short chain dehydrogenase EP552_09480 PF08240 Alcohol dehydrogenase GroES-like domain EP552_09480 PF00107 Zinc-binding dehydrogenase EP552_09485 PF01062 Bestrophin, RFP-TM, chloride channel EP552_09490 PF00072 Response regulator receiver domain EP552_09490 PF02954 Bacterial regulatory protein, Fis family EP552_09490 PF00158 Sigma-54 interaction domain EP552_09495 PF04273 Putative phosphatase (DUF442) EP552_09495 PF00753 Metallo-beta-lactamase superfamily EP552_09500 PF04273 Putative phosphatase (DUF442) EP552_09500 PF00753 Metallo-beta-lactamase superfamily EP552_09505 PF01925 Sulfite exporter TauE/SafE EP552_09520 PF06445 GyrI-like small molecule binding domain EP552_09520 PF12833 Helix-turn-helix domain EP552_09525 PF01638 HxlR-like helix-turn-helix EP552_09530 PF02525 Flavodoxin-like fold EP552_09555 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP552_09560 PF00528 Binding-protein-dependent transport system inner membrane component EP552_09565 PF00005 ABC transporter EP552_09580 PF00083 Sugar (and other) transporter EP552_09585 PF07715 TonB-dependent Receptor Plug Domain EP552_09585 PF00593 TonB dependent receptor EP552_09590 PF00206 Lyase EP552_09590 PF10415 Fumarase C C-terminus EP552_09605 PF03466 LysR substrate binding domain EP552_09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_09610 PF03466 LysR substrate binding domain EP552_09615 PF02803 Thiolase, C-terminal domain EP552_09615 PF00108 Thiolase, N-terminal domain EP552_09620 PF02667 Short chain fatty acid transporter EP552_09625 PF01144 Coenzyme A transferase EP552_09630 PF01144 Coenzyme A transferase EP552_09635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_09635 PF03466 LysR substrate binding domain EP552_09655 PF06719 AraC-type transcriptional regulator N-terminus EP552_09655 PF12833 Helix-turn-helix domain EP552_09660 PF07690 Major Facilitator Superfamily EP552_09665 PF01738 Dienelactone hydrolase family EP552_09680 PF01613 Flavin reductase like domain EP552_09695 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_09695 PF00970 Oxidoreductase FAD-binding domain EP552_09695 PF00175 Oxidoreductase NAD-binding domain EP552_09700 PF00866 Ring hydroxylating beta subunit EP552_09705 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP552_09705 PF00355 Rieske [2Fe-2S] domain EP552_09710 PF03459 TOBE domain EP552_09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_09720 PF00528 Binding-protein-dependent transport system inner membrane component EP552_09725 PF03459 TOBE domain EP552_09725 PF00005 ABC transporter EP552_09730 PF00106 short chain dehydrogenase EP552_09735 PF00857 Isochorismatase family EP552_09735 PF00550 Phosphopantetheine attachment site EP552_09745 PF00149 Calcineurin-like phosphoesterase EP552_09750 PF17941 Polyphosphate kinase C-terminal domain 1 EP552_09750 PF13090 Polyphosphate kinase C-terminal domain 2 EP552_09750 PF13089 Polyphosphate kinase N-terminal domain EP552_09750 PF02503 Polyphosphate kinase middle domain EP552_09755 PF08042 PqqA family EP552_09760 PF12706 Beta-lactamase superfamily domain EP552_09765 PF03070 TENA/THI-4/PQQC family EP552_09770 PF05402 Coenzyme PQQ synthesis protein D (PqqD) EP552_09775 PF04055 Radical SAM superfamily EP552_09775 PF13186 Iron-sulfur cluster-binding domain EP552_09780 PF01244 Membrane dipeptidase (Peptidase family M19) EP552_09815 PF13091 PLD-like domain EP552_09830 PF00199 Catalase EP552_09840 PF08240 Alcohol dehydrogenase GroES-like domain EP552_09840 PF00107 Zinc-binding dehydrogenase EP552_09850 PF00419 Fimbrial protein EP552_09855 PF13953 PapC C-terminal domain EP552_09855 PF13954 PapC N-terminal domain EP552_09855 PF00577 Outer membrane usher protein EP552_09860 PF02753 Pili assembly chaperone PapD, C-terminal domain EP552_09860 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP552_09865 PF16970 Type-1 fimbrial protein, A EP552_09885 PF01266 FAD dependent oxidoreductase EP552_09900 PF01593 Flavin containing amine oxidoreductase EP552_09905 PF00743 Flavin-binding monooxygenase-like EP552_09910 PF12146 Serine aminopeptidase, S33 EP552_09915 PF02321 Outer membrane efflux protein EP552_09920 PF00873 AcrB/AcrD/AcrF family EP552_09925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_09925 PF00529 HlyD membrane-fusion protein of T1SS EP552_09930 PF00072 Response regulator receiver domain EP552_09930 PF00486 Transcriptional regulatory protein, C terminal EP552_09935 PF16527 Two-component sensor protein CpxA, periplasmic domain EP552_09935 PF00672 HAMP domain EP552_09935 PF00512 His Kinase A (phospho-acceptor) domain EP552_09935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_09945 PF12833 Helix-turn-helix domain EP552_09945 PF02311 AraC-like ligand binding domain EP552_09950 PF12146 Serine aminopeptidase, S33 EP552_10005 PF04607 Region found in RelA / SpoT proteins EP552_10005 PF02824 TGS domain EP552_10005 PF13291 ACT domain EP552_10015 PF01975 Survival protein SurE EP552_10040 PF07690 Major Facilitator Superfamily EP552_10045 PF13533 Biotin-lipoyl like EP552_10050 PF01425 Amidase EP552_10055 PF00196 Bacterial regulatory proteins, luxR family EP552_10130 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP552_10135 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP552_10135 PF14572 Phosphoribosyl synthetase-associated domain EP552_10155 PF00005 ABC transporter EP552_10170 PF08240 Alcohol dehydrogenase GroES-like domain EP552_10170 PF00107 Zinc-binding dehydrogenase EP552_10185 PF12833 Helix-turn-helix domain EP552_10185 PF06719 AraC-type transcriptional regulator N-terminus EP552_10190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP552_10190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP552_10195 PF07690 Major Facilitator Superfamily EP552_10200 PF01370 NAD dependent epimerase/dehydratase family EP552_10205 PF03466 LysR substrate binding domain EP552_10205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_10215 PF00920 Dehydratase family EP552_10220 PF00171 Aldehyde dehydrogenase family EP552_10235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_10235 PF00529 HlyD membrane-fusion protein of T1SS EP552_10255 PF03737 Aldolase/RraA EP552_10260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP552_10260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP552_10260 PF01842 ACT domain EP552_10265 PF07690 Major Facilitator Superfamily EP552_10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_10285 PF03466 LysR substrate binding domain EP552_10295 PF08450 SMP-30/Gluconolactonase/LRE-like region EP552_10310 PF04909 Amidohydrolase EP552_10315 PF07690 Major Facilitator Superfamily EP552_10330 PF13332 Hemagglutinin repeat EP552_10330 PF04829 Pre-toxin domain with VENN motif EP552_10330 PF13018 Extended Signal Peptide of Type V secretion system EP552_10330 PF05860 haemagglutination activity domain EP552_10335 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EP552_10335 PF17287 POTRA domain EP552_10335 PF08479 POTRA domain, ShlB-type EP552_10350 PF07687 Peptidase dimerisation domain EP552_10350 PF01546 Peptidase family M20/M25/M40 EP552_10360 PF00999 Sodium/hydrogen exchanger family EP552_10360 PF02254 TrkA-N domain EP552_10365 PF07995 Glucose / Sorbosone dehydrogenase EP552_10370 PF03466 LysR substrate binding domain EP552_10370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_10375 PF00857 Isochorismatase family EP552_10385 PF13737 Transposase DDE domain EP552_10395 PF00440 Bacterial regulatory proteins, tetR family EP552_10395 PF08359 YsiA-like protein, C-terminal region EP552_10400 PF12706 Beta-lactamase superfamily domain EP552_10410 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_10420 PF09278 MerR, DNA binding EP552_10420 PF00376 MerR family regulatory protein EP552_10425 PF01872 RibD C-terminal domain EP552_10430 PF00106 short chain dehydrogenase EP552_10435 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_10435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP552_10440 PF01047 MarR family EP552_10445 PF07859 alpha/beta hydrolase fold EP552_10465 PF06628 Catalase-related immune-responsive EP552_10465 PF00199 Catalase EP552_10470 PF00561 alpha/beta hydrolase fold EP552_10480 PF00171 Aldehyde dehydrogenase family EP552_10485 PF00107 Zinc-binding dehydrogenase EP552_10485 PF08240 Alcohol dehydrogenase GroES-like domain EP552_10490 PF00474 Sodium:solute symporter family EP552_10495 PF04341 Protein of unknown function, DUF485 EP552_10500 PF13193 AMP-binding enzyme C-terminal domain EP552_10500 PF00501 AMP-binding enzyme EP552_10505 PF06506 Propionate catabolism activator EP552_10505 PF02954 Bacterial regulatory protein, Fis family EP552_10505 PF00158 Sigma-54 interaction domain EP552_10515 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_10515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_10515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_10535 PF00171 Aldehyde dehydrogenase family EP552_10545 PF07690 Major Facilitator Superfamily EP552_10550 PF00920 Dehydratase family EP552_10555 PF07729 FCD domain EP552_10555 PF00392 Bacterial regulatory proteins, gntR family EP552_10565 PF03466 LysR substrate binding domain EP552_10565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_10570 PF13378 Enolase C-terminal domain-like EP552_10570 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP552_10575 PF02426 Muconolactone delta-isomerase EP552_10580 PF04444 Catechol dioxygenase N terminus EP552_10580 PF00775 Dioxygenase EP552_10585 PF01144 Coenzyme A transferase EP552_10590 PF01144 Coenzyme A transferase EP552_10595 PF00108 Thiolase, N-terminal domain EP552_10595 PF02803 Thiolase, C-terminal domain EP552_10600 PF12146 Serine aminopeptidase, S33 EP552_10605 PF01804 Penicillin amidase EP552_10610 PF00171 Aldehyde dehydrogenase family EP552_10620 PF01179 Copper amine oxidase, enzyme domain EP552_10620 PF07833 Copper amine oxidase N-terminal domain EP552_10620 PF02727 Copper amine oxidase, N2 domain EP552_10620 PF02728 Copper amine oxidase, N3 domain EP552_10625 PF02311 AraC-like ligand binding domain EP552_10625 PF12833 Helix-turn-helix domain EP552_10630 PF01613 Flavin reductase like domain EP552_10635 PF00175 Oxidoreductase NAD-binding domain EP552_10635 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_10650 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP552_10650 PF00355 Rieske [2Fe-2S] domain EP552_10665 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP552_10670 PF01425 Amidase EP552_10680 PF07690 Major Facilitator Superfamily EP552_10690 PF00106 short chain dehydrogenase EP552_10705 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_10705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_10705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_10710 PF03466 LysR substrate binding domain EP552_10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_10715 PF09339 IclR helix-turn-helix domain EP552_10715 PF01614 Bacterial transcriptional regulator EP552_10720 PF00753 Metallo-beta-lactamase superfamily EP552_10730 PF04143 Sulphur transport EP552_10740 PF13360 PQQ-like domain EP552_10740 PF01011 PQQ enzyme repeat EP552_10745 PF04966 Carbohydrate-selective porin, OprB family EP552_10750 PF05048 Periplasmic copper-binding protein (NosD) EP552_10755 PF01487 Type I 3-dehydroquinase EP552_10760 PF00775 Dioxygenase EP552_10765 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal EP552_10765 PF00775 Dioxygenase EP552_10770 PF02627 Carboxymuconolactone decarboxylase family EP552_10775 PF07690 Major Facilitator Superfamily EP552_10780 PF00561 alpha/beta hydrolase fold EP552_10785 PF00206 Lyase EP552_10785 PF10397 Adenylosuccinate lyase C-terminus EP552_10790 PF00108 Thiolase, N-terminal domain EP552_10790 PF02803 Thiolase, C-terminal domain EP552_10795 PF01144 Coenzyme A transferase EP552_10800 PF01144 Coenzyme A transferase EP552_10805 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EP552_10810 PF04977 Septum formation initiator EP552_10815 PF04239 Protein of unknown function (DUF421) EP552_10820 PF00113 Enolase, C-terminal TIM barrel domain EP552_10820 PF03952 Enolase, N-terminal domain EP552_10825 PF00793 DAHP synthetase I family EP552_10830 PF06418 CTP synthase N-terminus EP552_10830 PF00117 Glutamine amidotransferase class-I EP552_10860 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_10860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP552_10875 PF00793 DAHP synthetase I family EP552_10880 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EP552_10885 PF02861 Clp amino terminal domain, pathogenicity island component EP552_10885 PF17871 AAA lid domain EP552_10885 PF00004 ATPase family associated with various cellular activities (AAA) EP552_10885 PF10431 C-terminal, D2-small domain, of ClpB protein EP552_10885 PF07724 AAA domain (Cdc48 subfamily) EP552_10890 PF02617 ATP-dependent Clp protease adaptor protein ClpS EP552_10900 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP552_10900 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP552_10915 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EP552_10920 PF00585 C-terminal regulatory domain of Threonine dehydratase EP552_10920 PF00291 Pyridoxal-phosphate dependent enzyme EP552_10925 PF02080 TrkA-C domain EP552_10925 PF02254 TrkA-N domain EP552_10930 PF02386 Cation transport protein EP552_10935 PF02253 Phospholipase A1 EP552_10940 PF08367 Peptidase M16C associated EP552_10940 PF00675 Insulinase (Peptidase family M16) EP552_10940 PF05193 Peptidase M16 inactive domain EP552_10945 PF00593 TonB dependent receptor EP552_10945 PF07715 TonB-dependent Receptor Plug Domain EP552_10950 PF00294 pfkB family carbohydrate kinase EP552_10960 PF07290 Protein of unknown function (DUF1449) EP552_10965 PF00665 Integrase core domain EP552_10965 PF13936 Helix-turn-helix domain EP552_10970 PF13737 Transposase DDE domain EP552_10980 PF01654 Cytochrome bd terminal oxidase subunit I EP552_10985 PF02322 Cytochrome bd terminal oxidase subunit II EP552_10990 PF08173 Membrane bound YbgT-like protein EP552_11005 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EP552_11015 PF02881 SRP54-type protein, helical bundle domain EP552_11015 PF00448 SRP54-type protein, GTPase domain EP552_11040 PF00478 IMP dehydrogenase / GMP reductase domain EP552_11040 PF00571 CBS domain EP552_11045 PF00202 Aminotransferase class-III EP552_11050 PF00462 Glutaredoxin EP552_11060 PF03466 LysR substrate binding domain EP552_11060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_11065 PF00557 Metallopeptidase family M24 EP552_11070 PF05525 Branched-chain amino acid transport protein EP552_11095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EP552_11095 PF00391 PEP-utilising enzyme, mobile domain EP552_11095 PF05524 PEP-utilising enzyme, N-terminal EP552_11095 PF02896 PEP-utilising enzyme, TIM barrel domain EP552_11095 PF00381 PTS HPr component phosphorylation site EP552_11100 PF00294 pfkB family carbohydrate kinase EP552_11105 PF02378 Phosphotransferase system, EIIC EP552_11105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EP552_11125 PF00563 EAL domain EP552_11125 PF00990 Diguanylate cyclase, GGDEF domain EP552_11125 PF03707 Bacterial signalling protein N terminal repeat EP552_11135 PF07995 Glucose / Sorbosone dehydrogenase EP552_11140 PF02586 SOS response associated peptidase (SRAP) EP552_11145 PF01740 STAS domain EP552_11145 PF00916 Sulfate permease family EP552_11150 PF00082 Subtilase family EP552_11150 PF05922 Peptidase inhibitor I9 EP552_11160 PF00324 Amino acid permease EP552_11165 PF00266 Aminotransferase class-V EP552_11170 PF01037 Lrp/AsnC ligand binding domain EP552_11195 PF13419 Haloacid dehalogenase-like hydrolase EP552_11200 PF01479 S4 domain EP552_11205 PF00154 recA bacterial DNA recombination protein EP552_11210 PF02631 RecX family EP552_11225 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EP552_11225 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_11230 PF07977 FabA-like domain EP552_11235 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EP552_11235 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_11245 PF07244 Surface antigen variable number repeat EP552_11245 PF01103 Surface antigen EP552_11250 PF17820 PDZ domain EP552_11250 PF02163 Peptidase family M50 EP552_11250 PF13180 PDZ domain EP552_11255 PF13288 DXP reductoisomerase C-terminal domain EP552_11255 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EP552_11255 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EP552_11265 PF01255 Putative undecaprenyl diphosphate synthase EP552_11270 PF01765 Ribosome recycling factor EP552_11275 PF00696 Amino acid kinase family EP552_11280 PF04055 Radical SAM superfamily EP552_11280 PF18693 TRAM domain EP552_11280 PF00919 Uncharacterized protein family UPF0004 EP552_11290 PF00512 His Kinase A (phospho-acceptor) domain EP552_11290 PF00989 PAS fold EP552_11290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_11295 PF02954 Bacterial regulatory protein, Fis family EP552_11295 PF00072 Response regulator receiver domain EP552_11295 PF00158 Sigma-54 interaction domain EP552_11300 PF00440 Bacterial regulatory proteins, tetR family EP552_11305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP552_11305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP552_11315 PF02542 YgbB family EP552_11325 PF01266 FAD dependent oxidoreductase EP552_11350 PF00206 Lyase EP552_11350 PF10415 Fumarase C C-terminus EP552_11355 PF16363 GDP-mannose 4,6 dehydratase EP552_11360 PF02635 DsrE/DsrF-like family EP552_11380 PF00892 EamA-like transporter family EP552_11385 PF00392 Bacterial regulatory proteins, gntR family EP552_11385 PF00155 Aminotransferase class I and II EP552_11390 PF01638 HxlR-like helix-turn-helix EP552_11395 PF03453 MoeA N-terminal region (domain I and II) EP552_11395 PF00994 Probable molybdopterin binding domain EP552_11395 PF03454 MoeA C-terminal region (domain IV) EP552_11400 PF00994 Probable molybdopterin binding domain EP552_11400 PF01967 MoaC family EP552_11405 PF02391 MoaE protein EP552_11415 PF04055 Radical SAM superfamily EP552_11415 PF06463 Molybdenum Cofactor Synthesis C EP552_11420 PF00384 Molybdopterin oxidoreductase EP552_11420 PF01568 Molydopterin dinucleotide binding domain EP552_11420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP552_11425 PF12804 MobA-like NTP transferase domain EP552_11430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP552_11430 PF04324 BFD-like [2Fe-2S] binding domain EP552_11430 PF00384 Molybdopterin oxidoreductase EP552_11430 PF01568 Molydopterin dinucleotide binding domain EP552_11435 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP552_11435 PF04324 BFD-like [2Fe-2S] binding domain EP552_11435 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP552_11435 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP552_11435 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_11440 PF04324 BFD-like [2Fe-2S] binding domain EP552_11440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP552_11440 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP552_11440 PF13806 Rieske-like [2Fe-2S] domain EP552_11440 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_11440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP552_11450 PF00072 Response regulator receiver domain EP552_11450 PF00486 Transcriptional regulatory protein, C terminal EP552_11455 PF00005 ABC transporter EP552_11465 PF11799 impB/mucB/samB family C-terminal domain EP552_11465 PF00817 impB/mucB/samB family EP552_11465 PF13438 Domain of unknown function (DUF4113) EP552_11470 PF01220 Dehydroquinase class II EP552_11475 PF00364 Biotin-requiring enzyme EP552_11480 PF02785 Biotin carboxylase C-terminal domain EP552_11480 PF00289 Biotin carboxylase, N-terminal domain EP552_11480 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP552_11490 PF12832 MFS_1 like family EP552_11500 PF08019 Phosphoethanolamine transferase EptA/EptB EP552_11500 PF00884 Sulfatase EP552_11505 PF13737 Transposase DDE domain EP552_11515 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP552_11595 PF13005 zinc-finger binding domain of transposase IS66 EP552_11595 PF13007 Transposase C of IS166 homeodomain EP552_11595 PF03050 Transposase IS66 family EP552_11595 PF13817 IS66 C-terminal element EP552_11655 PF13936 Helix-turn-helix domain EP552_11655 PF00665 Integrase core domain EP552_11705 PF00145 C-5 cytosine-specific DNA methylase EP552_11790 PF01645 Conserved region in glutamate synthase EP552_11805 PF01565 FAD binding domain EP552_11805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EP552_11810 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP552_11820 PF00465 Iron-containing alcohol dehydrogenase EP552_11825 PF03061 Thioesterase superfamily EP552_11830 PF05506 Domain of unknown function (DUF756) EP552_11830 PF04185 Phosphoesterase family EP552_11835 PF12170 DNA polymerase III tau subunit V interacting with alpha EP552_11835 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EP552_11835 PF12169 DNA polymerase III subunits gamma and tau domain III EP552_11840 PF07690 Major Facilitator Superfamily EP552_11865 PF00108 Thiolase, N-terminal domain EP552_11865 PF02803 Thiolase, C-terminal domain EP552_11875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_11875 PF03466 LysR substrate binding domain EP552_11885 PF01810 LysE type translocator EP552_11890 PF01037 Lrp/AsnC ligand binding domain EP552_11895 PF03594 Benzoate membrane transport protein EP552_11900 PF02308 MgtC family EP552_11905 PF00690 Cation transporter/ATPase, N-terminus EP552_11905 PF00689 Cation transporting ATPase, C-terminus EP552_11920 PF00582 Universal stress protein family EP552_11925 PF12848 ABC transporter EP552_11925 PF00005 ABC transporter EP552_11945 PF07715 TonB-dependent Receptor Plug Domain EP552_11945 PF00593 TonB dependent receptor EP552_11980 PF00924 Mechanosensitive ion channel EP552_11985 PF07715 TonB-dependent Receptor Plug Domain EP552_11985 PF00593 TonB dependent receptor EP552_11990 PF00440 Bacterial regulatory proteins, tetR family EP552_12005 PF01037 Lrp/AsnC ligand binding domain EP552_12010 PF01817 Chorismate mutase type II EP552_12020 PF00106 short chain dehydrogenase EP552_12030 PF01433 Peptidase family M1 domain EP552_12030 PF11940 Domain of unknown function (DUF3458) Ig-like fold EP552_12030 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EP552_12045 PF02110 Hydroxyethylthiazole kinase family EP552_12050 PF06445 GyrI-like small molecule binding domain EP552_12060 PF14493 Helix-turn-helix domain EP552_12060 PF05970 PIF1-like helicase EP552_12065 PF00465 Iron-containing alcohol dehydrogenase EP552_12080 PF00171 Aldehyde dehydrogenase family EP552_12085 PF13520 Amino acid permease EP552_12090 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EP552_12095 PF05985 Ethanolamine ammonia-lyase light chain (EutC) EP552_12100 PF00958 GMP synthase C terminal domain EP552_12100 PF00117 Glutamine amidotransferase class-I EP552_12100 PF02540 NAD synthase EP552_12115 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EP552_12115 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP552_12120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP552_12125 PF00149 Calcineurin-like phosphoesterase EP552_12135 PF00881 Nitroreductase family EP552_12145 PF17209 Hfq protein EP552_12155 PF01119 DNA mismatch repair protein, C-terminal domain EP552_12155 PF08676 MutL C terminal dimerisation domain EP552_12160 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EP552_12165 PF00849 RNA pseudouridylate synthase EP552_12165 PF01479 S4 domain EP552_12180 PF01479 S4 domain EP552_12180 PF00849 RNA pseudouridylate synthase EP552_12190 PF04284 Protein of unknown function (DUF441) EP552_12195 PF03466 LysR substrate binding domain EP552_12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_12210 PF07690 Major Facilitator Superfamily EP552_12215 PF00027 Cyclic nucleotide-binding domain EP552_12215 PF00520 Ion transport protein EP552_12225 PF00330 Aconitase family (aconitate hydratase) EP552_12225 PF06434 Aconitate hydratase 2 N-terminus EP552_12225 PF11791 Aconitate B N-terminal domain EP552_12245 PF17243 POTRA domain TamA domain 1 EP552_12245 PF07244 Surface antigen variable number repeat EP552_12245 PF01103 Surface antigen EP552_12250 PF07690 Major Facilitator Superfamily EP552_12255 PF03232 Ubiquinone biosynthesis protein COQ7 EP552_12265 PF00120 Glutamine synthetase, catalytic domain EP552_12270 PF00072 Response regulator receiver domain EP552_12270 PF00486 Transcriptional regulatory protein, C terminal EP552_12275 PF02702 Osmosensitive K+ channel His kinase sensor domain EP552_12275 PF00512 His Kinase A (phospho-acceptor) domain EP552_12275 PF13493 Domain of unknown function (DUF4118) EP552_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_12280 PF02669 K+-transporting ATPase, c chain EP552_12290 PF03814 Potassium-transporting ATPase A subunit EP552_12305 PF03109 ABC1 family EP552_12310 PF00899 ThiF family EP552_12315 PF01613 Flavin reductase like domain EP552_12320 PF00501 AMP-binding enzyme EP552_12320 PF13193 AMP-binding enzyme C-terminal domain EP552_12325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_12325 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_12325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_12330 PF00106 short chain dehydrogenase EP552_12335 PF12833 Helix-turn-helix domain EP552_12340 PF09084 NMT1/THI5 like EP552_12345 PF00528 Binding-protein-dependent transport system inner membrane component EP552_12350 PF13847 Methyltransferase domain EP552_12350 PF17827 PrmC N-terminal domain EP552_12355 PF00472 RF-1 domain EP552_12355 PF03462 PCRF domain EP552_12365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_12365 PF03466 LysR substrate binding domain EP552_12385 PF00296 Luciferase-like monooxygenase EP552_12395 PF13994 PgaD-like protein EP552_12400 PF00535 Glycosyl transferase family 2 EP552_12405 PF14883 Hypothetical glycosyl hydrolase family 13 EP552_12405 PF01522 Polysaccharide deacetylase EP552_12415 PF03618 Kinase/pyrophosphorylase EP552_12420 PF00391 PEP-utilising enzyme, mobile domain EP552_12420 PF02896 PEP-utilising enzyme, TIM barrel domain EP552_12420 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EP552_12430 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EP552_12430 PF06481 COX Aromatic Rich Motif EP552_12435 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP552_12440 PF00510 Cytochrome c oxidase subunit III EP552_12445 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EP552_12450 PF01040 UbiA prenyltransferase family EP552_12455 PF01250 Ribosomal protein S6 EP552_12460 PF01084 Ribosomal protein S18 EP552_12465 PF01281 Ribosomal protein L9, N-terminal domain EP552_12465 PF03948 Ribosomal protein L9, C-terminal domain EP552_12470 PF00772 DnaB-like helicase N terminal domain EP552_12470 PF03796 DnaB-like helicase C terminal domain EP552_12475 PF00842 Alanine racemase, C-terminal domain EP552_12475 PF01168 Alanine racemase, N-terminal domain EP552_12485 PF08379 Bacterial transglutaminase-like N-terminal region EP552_12485 PF01841 Transglutaminase-like superfamily EP552_12495 PF14403 Circularly permuted ATP-grasp type 2 EP552_12505 PF13932 GidA associated domain EP552_12505 PF01134 Glucose inhibited division protein A EP552_12525 PF02954 Bacterial regulatory protein, Fis family EP552_12530 PF02142 MGS-like domain EP552_12530 PF01808 AICARFT/IMPCHase bienzyme EP552_12535 PF02843 Phosphoribosylglycinamide synthetase, C domain EP552_12535 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EP552_12535 PF02844 Phosphoribosylglycinamide synthetase, N domain EP552_12540 PF03180 NLPA lipoprotein EP552_12545 PF00005 ABC transporter EP552_12545 PF09383 NIL domain EP552_12550 PF00528 Binding-protein-dependent transport system inner membrane component EP552_12555 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP552_12555 PF00753 Metallo-beta-lactamase superfamily EP552_12565 PF00375 Sodium:dicarboxylate symporter family EP552_12585 PF07995 Glucose / Sorbosone dehydrogenase EP552_12590 PF00892 EamA-like transporter family EP552_12595 PF01177 Asp/Glu/Hydantoin racemase EP552_12605 PF02470 MlaD protein EP552_12610 PF04403 Paraquat-inducible protein A EP552_12620 PF06826 Predicted Permease Membrane Region EP552_12620 PF02080 TrkA-C domain EP552_12625 PF00155 Aminotransferase class I and II EP552_12650 PF08946 Osmosensory transporter coiled coil EP552_12650 PF00083 Sugar (and other) transporter EP552_12700 PF07729 FCD domain EP552_12700 PF00392 Bacterial regulatory proteins, gntR family EP552_12710 PF03616 Sodium/glutamate symporter EP552_12715 PF00561 alpha/beta hydrolase fold EP552_12740 PF04076 Bacterial OB fold (BOF) protein EP552_12770 PF00324 Amino acid permease EP552_12775 PF00171 Aldehyde dehydrogenase family EP552_12780 PF00202 Aminotransferase class-III EP552_12785 PF03466 LysR substrate binding domain EP552_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_12810 PF00069 Protein kinase domain EP552_12830 PF00814 Glycoprotease family EP552_12835 PF01165 Ribosomal protein S21 EP552_12840 PF09424 Yqey-like protein EP552_12845 PF01435 Peptidase family M48 EP552_12850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP552_12850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP552_12865 PF00156 Phosphoribosyl transferase domain EP552_12870 PF02674 Colicin V production protein EP552_12875 PF01180 Dihydroorotate dehydrogenase EP552_12895 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EP552_12895 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EP552_12900 PF00881 Nitroreductase family EP552_12910 PF00270 DEAD/DEAH box helicase EP552_12910 PF00271 Helicase conserved C-terminal domain EP552_12915 PF00313 'Cold-shock' DNA-binding domain EP552_12925 PF04545 Sigma-70, region 4 EP552_12925 PF00140 Sigma-70 factor, region 1.2 EP552_12925 PF04542 Sigma-70 region 2 EP552_12930 PF04241 Protein of unknown function (DUF423) EP552_12940 PF05690 Thiazole biosynthesis protein ThiG EP552_12950 PF03883 Peroxide stress protein YaaA EP552_12960 PF12706 Beta-lactamase superfamily domain EP552_12965 PF01546 Peptidase family M20/M25/M40 EP552_12965 PF07687 Peptidase dimerisation domain EP552_12975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP552_12980 PF01817 Chorismate mutase type II EP552_12980 PF00800 Prephenate dehydratase EP552_12980 PF01842 ACT domain EP552_12985 PF00756 Putative esterase EP552_12990 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_12990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_12990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_12995 PF00375 Sodium:dicarboxylate symporter family EP552_13005 PF02885 Glycosyl transferase family, helical bundle domain EP552_13005 PF00591 Glycosyl transferase family, a/b domain EP552_13010 PF07023 Protein of unknown function (DUF1315) EP552_13015 PF01513 ATP-NAD kinase EP552_13020 PF14814 Bifunctional transglycosylase second domain EP552_13020 PF00905 Penicillin binding protein transpeptidase domain EP552_13020 PF00912 Transglycosylase EP552_13030 PF00293 NUDIX domain EP552_13040 PF08521 Two-component sensor kinase N-terminal EP552_13040 PF00512 His Kinase A (phospho-acceptor) domain EP552_13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_13045 PF00486 Transcriptional regulatory protein, C terminal EP552_13045 PF00072 Response regulator receiver domain EP552_13055 PF00437 Type II/IV secretion system protein EP552_13065 PF18389 TrmO C-terminal domain EP552_13065 PF01980 tRNA-methyltransferase O EP552_13070 PF00175 Oxidoreductase NAD-binding domain EP552_13070 PF00970 Oxidoreductase FAD-binding domain EP552_13075 PF02567 Phenazine biosynthesis-like protein EP552_13080 PF00155 Aminotransferase class I and II EP552_13080 PF00392 Bacterial regulatory proteins, gntR family EP552_13090 PF00037 4Fe-4S binding domain EP552_13095 PF00893 Small Multidrug Resistance protein EP552_13100 PF00005 ABC transporter EP552_13105 PF00528 Binding-protein-dependent transport system inner membrane component EP552_13110 PF00528 Binding-protein-dependent transport system inner membrane component EP552_13115 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP552_13120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_13120 PF03466 LysR substrate binding domain EP552_13125 PF13533 Biotin-lipoyl like EP552_13130 PF00873 AcrB/AcrD/AcrF family EP552_13135 PF02321 Outer membrane efflux protein EP552_13140 PF00464 Serine hydroxymethyltransferase EP552_13170 PF00005 ABC transporter EP552_13175 PF01061 ABC-2 type transporter EP552_13180 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EP552_13180 PF14489 QueF-like protein EP552_13190 PF01098 Cell cycle protein EP552_13195 PF13406 Transglycosylase SLT domain EP552_13200 PF03330 Lytic transglycolase EP552_13200 PF05036 Sporulation related domain EP552_13220 PF12833 Helix-turn-helix domain EP552_13230 PF00889 Elongation factor TS EP552_13235 PF00318 Ribosomal protein S2 EP552_13240 PF00557 Metallopeptidase family M24 EP552_13250 PF07690 Major Facilitator Superfamily EP552_13260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP552_13260 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_13265 PF04055 Radical SAM superfamily EP552_13270 PF09317 Domain of unknown function (DUF1974) EP552_13270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_13270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_13285 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP552_13285 PF05221 S-adenosyl-L-homocysteine hydrolase EP552_13290 PF02219 Methylenetetrahydrofolate reductase EP552_13295 PF04452 RNA methyltransferase EP552_13300 PF13737 Transposase DDE domain EP552_13305 PF00563 EAL domain EP552_13305 PF00990 Diguanylate cyclase, GGDEF domain EP552_13305 PF03707 Bacterial signalling protein N terminal repeat EP552_13310 PF00390 Malic enzyme, N-terminal domain EP552_13310 PF03949 Malic enzyme, NAD binding domain EP552_13310 PF01515 Phosphate acetyl/butaryl transferase EP552_13315 PF01743 Poly A polymerase head domain EP552_13315 PF12627 Probable RNA and SrmB- binding site of polymerase A EP552_13320 PF13180 PDZ domain EP552_13325 PF01784 NIF3 (NGG1p interacting factor 3) EP552_13330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EP552_13330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EP552_13365 PF01040 UbiA prenyltransferase family EP552_13370 PF04345 Chorismate lyase EP552_13380 PF00854 POT family EP552_13390 PF13356 Arm DNA-binding domain EP552_13390 PF00589 Phage integrase family EP552_13610 PF13737 Transposase DDE domain EP552_13775 PF01812 5-formyltetrahydrofolate cyclo-ligase family EP552_13785 PF05662 Coiled stalk of trimeric autotransporter adhesin EP552_13785 PF13018 Extended Signal Peptide of Type V secretion system EP552_13785 PF03895 YadA-like membrane anchor domain EP552_13785 PF05658 Head domain of trimeric autotransporter adhesin EP552_13790 PF05362 Lon protease (S16) C-terminal proteolytic domain EP552_13790 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP552_13790 PF00004 ATPase family associated with various cellular activities (AAA) EP552_13795 PF02590 Predicted SPOUT methyltransferase EP552_13800 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP552_13810 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP552_13810 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP552_13815 PF04060 Putative Fe-S cluster EP552_13820 PF00633 Helix-hairpin-helix motif EP552_13820 PF10576 Iron-sulfur binding domain of endonuclease III EP552_13820 PF00730 HhH-GPD superfamily base excision DNA repair protein EP552_13830 PF05191 Adenylate kinase, active site lid EP552_13845 PF03717 Penicillin-binding Protein dimerisation domain EP552_13845 PF00905 Penicillin binding protein transpeptidase domain EP552_13860 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP552_13865 PF01730 UreF EP552_13870 PF02814 UreE urease accessory protein, N-terminal domain EP552_13870 PF05194 UreE urease accessory protein, C-terminal domain EP552_13880 PF00699 Urease beta subunit EP552_13885 PF00547 Urease, gamma subunit EP552_13890 PF01774 UreD urease accessory protein EP552_13905 PF00463 Isocitrate lyase family EP552_13910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_13910 PF03466 LysR substrate binding domain EP552_13915 PF03471 Transporter associated domain EP552_13915 PF01595 Cyclin M transmembrane N-terminal domain EP552_13915 PF00571 CBS domain EP552_13925 PF03600 Citrate transporter EP552_13940 PF00009 Elongation factor Tu GTP binding domain EP552_13945 PF01507 Phosphoadenosine phosphosulfate reductase family EP552_13955 PF14052 Capsule assembly protein Wzi EP552_13960 PF00152 tRNA synthetases class II (D, K and N) EP552_13960 PF01336 OB-fold nucleic acid binding domain EP552_13975 PF00301 Rubredoxin EP552_13980 PF18113 Rubredoxin binding C-terminal domain EP552_13980 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_13985 PF00561 alpha/beta hydrolase fold EP552_13990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_13990 PF03466 LysR substrate binding domain EP552_14005 PF13089 Polyphosphate kinase N-terminal domain EP552_14005 PF17941 Polyphosphate kinase C-terminal domain 1 EP552_14005 PF02503 Polyphosphate kinase middle domain EP552_14005 PF13090 Polyphosphate kinase C-terminal domain 2 EP552_14010 PF00912 Transglycosylase EP552_14015 PF01694 Rhomboid family EP552_14025 PF00005 ABC transporter EP552_14030 PF13472 GDSL-like Lipase/Acylhydrolase family EP552_14035 PF00484 Carbonic anhydrase EP552_14040 PF00561 alpha/beta hydrolase fold EP552_14050 PF07715 TonB-dependent Receptor Plug Domain EP552_14050 PF00593 TonB dependent receptor EP552_14055 PF01106 NifU-like domain EP552_14055 PF01521 Iron-sulphur cluster biosynthesis EP552_14065 PF00884 Sulfatase EP552_14070 PF03781 Sulfatase-modifying factor enzyme 1 EP552_14085 PF00291 Pyridoxal-phosphate dependent enzyme EP552_14090 PF01384 Phosphate transporter family EP552_14095 PF02965 Vitamin B12 dependent methionine synthase, activation domain EP552_14095 PF02607 B12 binding domain EP552_14095 PF00809 Pterin binding enzyme EP552_14095 PF02574 Homocysteine S-methyltransferase EP552_14095 PF02310 B12 binding domain EP552_14100 PF02780 Transketolase, C-terminal domain EP552_14100 PF02779 Transketolase, pyrimidine binding domain EP552_14105 PF00456 Transketolase, thiamine diphosphate binding domain EP552_14110 PF07690 Major Facilitator Superfamily EP552_14120 PF03466 LysR substrate binding domain EP552_14120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_14135 PF01263 Aldose 1-epimerase EP552_14140 PF07690 Major Facilitator Superfamily EP552_14145 PF12833 Helix-turn-helix domain EP552_14145 PF02311 AraC-like ligand binding domain EP552_14150 PF04960 Glutaminase EP552_14155 PF01327 Polypeptide deformylase EP552_14160 PF07690 Major Facilitator Superfamily EP552_14170 PF00205 Thiamine pyrophosphate enzyme, central domain EP552_14170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP552_14170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP552_14175 PF00171 Aldehyde dehydrogenase family EP552_14180 PF01958 Domain of unknown function DUF108 EP552_14180 PF03447 Homoserine dehydrogenase, NAD binding domain EP552_14190 PF12697 Alpha/beta hydrolase family EP552_14200 PF07690 Major Facilitator Superfamily EP552_14205 PF14759 Reductase C-terminal EP552_14205 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_14210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP552_14220 PF00355 Rieske [2Fe-2S] domain EP552_14230 PF00355 Rieske [2Fe-2S] domain EP552_14235 PF09339 IclR helix-turn-helix domain EP552_14235 PF01614 Bacterial transcriptional regulator EP552_14250 PF00378 Enoyl-CoA hydratase/isomerase EP552_14260 PF00535 Glycosyl transferase family 2 EP552_14265 PF01522 Polysaccharide deacetylase EP552_14265 PF14883 Hypothetical glycosyl hydrolase family 13 EP552_14270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP552_14275 PF07152 YaeQ protein EP552_14280 PF00375 Sodium:dicarboxylate symporter family EP552_14285 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP552_14285 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP552_14295 PF03061 Thioesterase superfamily EP552_14305 PF02028 BCCT, betaine/carnitine/choline family transporter EP552_14310 PF02028 BCCT, betaine/carnitine/choline family transporter EP552_14315 PF13977 BetI-type transcriptional repressor, C-terminal EP552_14315 PF00440 Bacterial regulatory proteins, tetR family EP552_14320 PF00171 Aldehyde dehydrogenase family EP552_14325 PF00732 GMC oxidoreductase EP552_14325 PF05199 GMC oxidoreductase EP552_14330 PF06039 Malate:quinone oxidoreductase (Mqo) EP552_14340 PF02574 Homocysteine S-methyltransferase EP552_14345 PF13520 Amino acid permease EP552_14395 PF07715 TonB-dependent Receptor Plug Domain EP552_14395 PF00593 TonB dependent receptor EP552_14405 PF08281 Sigma-70, region 4 EP552_14405 PF04542 Sigma-70 region 2 EP552_14415 PF00701 Dihydrodipicolinate synthetase family EP552_14420 PF00083 Sugar (and other) transporter EP552_14475 PF07690 Major Facilitator Superfamily EP552_14480 PF13533 Biotin-lipoyl like EP552_14485 PF03061 Thioesterase superfamily EP552_14490 PF00490 Delta-aminolevulinic acid dehydratase EP552_14495 PF01266 FAD dependent oxidoreductase EP552_14500 PF08338 Domain of unknown function (DUF1731) EP552_14500 PF01370 NAD dependent epimerase/dehydratase family EP552_14520 PF12320 Type 5 capsule protein repressor C-terminal domain EP552_14520 PF00149 Calcineurin-like phosphoesterase EP552_14530 PF01168 Alanine racemase, N-terminal domain EP552_14535 PF00437 Type II/IV secretion system protein EP552_14540 PF00437 Type II/IV secretion system protein EP552_14545 PF01475 Ferric uptake regulator family EP552_14550 PF04355 SmpA / OmlA family EP552_14555 PF03658 RnfH family Ubiquitin EP552_14570 PF01814 Hemerythrin HHE cation binding domain EP552_14575 PF13230 Glutamine amidotransferases class-II EP552_14585 PF00696 Amino acid kinase family EP552_14590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP552_14590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP552_14590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP552_14590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP552_14595 PF00692 dUTPase EP552_14600 PF00580 UvrD/REP helicase N-terminal domain EP552_14600 PF13361 UvrD-like helicase C-terminal domain EP552_14605 PF13488 Glycine zipper EP552_14605 PF00691 OmpA family EP552_14610 PF01553 Acyltransferase EP552_14620 PF03775 Septum formation inhibitor MinC, C-terminal domain EP552_14625 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EP552_14630 PF03776 Septum formation topological specificity factor MinE EP552_14645 PF01810 LysE type translocator EP552_14660 PF13007 Transposase C of IS166 homeodomain EP552_14660 PF13817 IS66 C-terminal element EP552_14660 PF03050 Transposase IS66 family EP552_14660 PF13005 zinc-finger binding domain of transposase IS66 EP552_14665 PF17854 FtsK alpha domain EP552_14665 PF09397 Ftsk gamma domain EP552_14665 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EP552_14665 PF01580 FtsK/SpoIIIE family EP552_14670 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP552_14675 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EP552_14680 PF04377 Arginine-tRNA-protein transferase, C terminus EP552_14680 PF04376 Arginine-tRNA-protein transferase, N terminus EP552_14685 PF00583 Acetyltransferase (GNAT) family EP552_14700 PF03143 Elongation factor Tu C-terminal domain EP552_14700 PF00009 Elongation factor Tu GTP binding domain EP552_14700 PF03144 Elongation factor Tu domain 2 EP552_14705 PF03144 Elongation factor Tu domain 2 EP552_14705 PF00009 Elongation factor Tu GTP binding domain EP552_14705 PF03764 Elongation factor G, domain IV EP552_14705 PF14492 Elongation Factor G, domain II EP552_14705 PF00679 Elongation factor G C-terminus EP552_14710 PF00177 Ribosomal protein S7p/S5e EP552_14715 PF00164 Ribosomal protein S12/S23 EP552_14725 PF02801 Beta-ketoacyl synthase, C-terminal domain EP552_14725 PF00109 Beta-ketoacyl synthase, N-terminal domain EP552_14735 PF05726 Pirin C-terminal cupin domain EP552_14735 PF02678 Pirin EP552_14745 PF00795 Carbon-nitrogen hydrolase EP552_14745 PF02540 NAD synthase EP552_14760 PF00175 Oxidoreductase NAD-binding domain EP552_14760 PF00111 2Fe-2S iron-sulfur cluster binding domain EP552_14760 PF00970 Oxidoreductase FAD-binding domain EP552_14765 PF00171 Aldehyde dehydrogenase family EP552_14770 PF00355 Rieske [2Fe-2S] domain EP552_14770 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP552_14775 PF07859 alpha/beta hydrolase fold EP552_14780 PF02028 BCCT, betaine/carnitine/choline family transporter EP552_14785 PF00180 Isocitrate/isopropylmalate dehydrogenase EP552_14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_14790 PF03466 LysR substrate binding domain EP552_14810 PF00037 4Fe-4S binding domain EP552_14815 PF01467 Cytidylyltransferase-like EP552_14820 PF01668 SmpB protein EP552_14825 PF03358 NADPH-dependent FMN reductase EP552_14835 PF01479 S4 domain EP552_14835 PF00849 RNA pseudouridylate synthase EP552_14840 PF13525 Outer membrane lipoprotein EP552_14845 PF01807 CHC2 zinc finger EP552_14845 PF08275 DNA primase catalytic core, N-terminal domain EP552_14845 PF08278 DNA primase DnaG DnaB-binding EP552_14845 PF10410 DnaB-helicase binding domain of primase EP552_14850 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EP552_14850 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EP552_14850 PF01488 Shikimate / quinate 5-dehydrogenase EP552_14860 PF03550 Outer membrane lipoprotein LolB EP552_14865 PF00288 GHMP kinases N terminal domain EP552_14865 PF08544 GHMP kinases C terminal EP552_14880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP552_14880 PF14572 Phosphoribosyl synthetase-associated domain EP552_14885 PF01386 Ribosomal L25p family EP552_14890 PF01195 Peptidyl-tRNA hydrolase EP552_14895 PF02261 Aspartate decarboxylase EP552_14910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP552_14920 PF08543 Phosphomethylpyrimidine kinase EP552_14920 PF03070 TENA/THI-4/PQQC family EP552_14920 PF02581 Thiamine monophosphate synthase EP552_14925 PF04972 BON domain EP552_14925 PF01476 LysM domain EP552_14930 PF00550 Phosphopantetheine attachment site EP552_14940 PF00698 Acyl transferase domain EP552_14945 PF01783 Ribosomal L32p protein family EP552_14950 PF02620 Large ribosomal RNA subunit accumulation protein YceD EP552_14955 PF04315 Elongation factor P hydroxylase EP552_14960 PF01300 Telomere recombination EP552_14965 PF02616 Segregation and condensation protein ScpA EP552_14970 PF04079 Segregation and condensation complex subunit ScpB EP552_14975 PF01479 S4 domain EP552_14975 PF00849 RNA pseudouridylate synthase EP552_14990 PF00155 Aminotransferase class I and II EP552_14995 PF04055 Radical SAM superfamily EP552_14995 PF06968 Biotin and Thiamin Synthesis associated domain EP552_14995 PF00202 Aminotransferase class-III EP552_15000 PF08241 Methyltransferase domain EP552_15000 PF12697 Alpha/beta hydrolase family EP552_15005 PF02358 Trehalose-phosphatase EP552_15010 PF00982 Glycosyltransferase family 20 EP552_15015 PF07690 Major Facilitator Superfamily EP552_15020 PF00210 Ferritin-like domain EP552_15025 PF00533 BRCA1 C Terminus (BRCT) domain EP552_15025 PF03120 NAD-dependent DNA ligase OB-fold domain EP552_15025 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EP552_15025 PF12826 Helix-hairpin-helix motif EP552_15025 PF01653 NAD-dependent DNA ligase adenylation domain EP552_15035 PF06470 SMC proteins Flexible Hinge Domain EP552_15035 PF02463 RecF/RecN/SMC N terminal domain EP552_15045 PF01925 Sulfite exporter TauE/SafE EP552_15055 PF03309 Type III pantothenate kinase EP552_15060 PF00448 SRP54-type protein, GTPase domain EP552_15060 PF02881 SRP54-type protein, helical bundle domain EP552_15060 PF02978 Signal peptide binding domain EP552_15070 PF01207 Dihydrouridine synthase (Dus) EP552_15105 PF00692 dUTPase EP552_15120 PF01048 Phosphorylase superfamily EP552_15130 PF10609 NUBPL iron-transfer P-loop NTPase EP552_15140 PF09334 tRNA synthetases class I (M) EP552_15140 PF01588 Putative tRNA binding domain EP552_15165 PF13533 Biotin-lipoyl like EP552_15170 PF00291 Pyridoxal-phosphate dependent enzyme EP552_15185 PF05552 Conserved TM helix EP552_15200 PF00970 Oxidoreductase FAD-binding domain EP552_15200 PF00175 Oxidoreductase NAD-binding domain EP552_15205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_15205 PF03466 LysR substrate binding domain EP552_15210 PF00313 'Cold-shock' DNA-binding domain EP552_15220 PF00361 Proton-conducting membrane transporter EP552_15225 PF00361 Proton-conducting membrane transporter EP552_15230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP552_15230 PF00361 Proton-conducting membrane transporter EP552_15235 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP552_15240 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EP552_15245 PF12838 4Fe-4S dicluster domain EP552_15250 PF00146 NADH dehydrogenase EP552_15255 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP552_15255 PF00384 Molybdopterin oxidoreductase EP552_15255 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EP552_15260 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EP552_15260 PF10531 SLBB domain EP552_15260 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EP552_15270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EP552_15270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EP552_15275 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EP552_15280 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EP552_15285 PF17151 Periplasmic sensor domain EP552_15285 PF00990 Diguanylate cyclase, GGDEF domain EP552_15295 PF00512 His Kinase A (phospho-acceptor) domain EP552_15295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_15295 PF00672 HAMP domain EP552_15300 PF00486 Transcriptional regulatory protein, C terminal EP552_15300 PF00072 Response regulator receiver domain EP552_15310 PF03477 ATP cone domain EP552_15310 PF02867 Ribonucleotide reductase, barrel domain EP552_15310 PF00317 Ribonucleotide reductase, all-alpha domain EP552_15320 PF00268 Ribonucleotide reductase, small chain EP552_15330 PF13756 Stimulus-sensing domain EP552_15330 PF13755 Sensor N-terminal transmembrane domain EP552_15330 PF00512 His Kinase A (phospho-acceptor) domain EP552_15330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_15330 PF00672 HAMP domain EP552_15400 PF13360 PQQ-like domain EP552_15400 PF01011 PQQ enzyme repeat EP552_15420 PF02567 Phenazine biosynthesis-like protein EP552_15435 PF00665 Integrase core domain EP552_15435 PF13936 Helix-turn-helix domain EP552_15455 PF01613 Flavin reductase like domain EP552_15460 PF01717 Cobalamin-independent synthase, Catalytic domain EP552_15460 PF08267 Cobalamin-independent synthase, N-terminal domain EP552_15470 PF03466 LysR substrate binding domain EP552_15470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_15475 PF01810 LysE type translocator EP552_15485 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP552_15485 PF12833 Helix-turn-helix domain EP552_15490 PF07687 Peptidase dimerisation domain EP552_15490 PF01546 Peptidase family M20/M25/M40 EP552_15500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_15500 PF03466 LysR substrate binding domain EP552_15510 PF07690 Major Facilitator Superfamily EP552_15520 PF03466 LysR substrate binding domain EP552_15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_15525 PF00890 FAD binding domain EP552_15525 PF14537 Cytochrome c3 EP552_15535 PF02515 CoA-transferase family III EP552_15540 PF07690 Major Facilitator Superfamily EP552_15545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_15545 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_15545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_15550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_15550 PF03466 LysR substrate binding domain EP552_15555 PF08240 Alcohol dehydrogenase GroES-like domain EP552_15555 PF00107 Zinc-binding dehydrogenase EP552_15560 PF00962 Adenosine/AMP deaminase EP552_15585 PF02445 Quinolinate synthetase A protein EP552_15590 PF01960 ArgJ family EP552_15595 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP552_15595 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP552_15600 PF00893 Small Multidrug Resistance protein EP552_15610 PF05275 Copper resistance protein B precursor (CopB) EP552_15615 PF00394 Multicopper oxidase EP552_15615 PF07731 Multicopper oxidase EP552_15615 PF07732 Multicopper oxidase EP552_15630 PF00834 Ribulose-phosphate 3 epimerase family EP552_15640 PF00756 Putative esterase EP552_15650 PF04445 Putative SAM-dependent methyltransferase EP552_15655 PF00814 Glycoprotease family EP552_15660 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_15665 PF00293 NUDIX domain EP552_15700 PF13007 Transposase C of IS166 homeodomain EP552_15700 PF03050 Transposase IS66 family EP552_15700 PF13005 zinc-finger binding domain of transposase IS66 EP552_15700 PF13817 IS66 C-terminal element EP552_15720 PF00425 chorismate binding enzyme EP552_15720 PF04715 Anthranilate synthase component I, N terminal region EP552_15725 PF00155 Aminotransferase class I and II EP552_15730 PF00815 Histidinol dehydrogenase EP552_15735 PF01634 ATP phosphoribosyltransferase EP552_15740 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP552_15745 PF01722 BolA-like protein EP552_15750 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EP552_15755 PF04552 Sigma-54, DNA binding domain EP552_15755 PF04963 Sigma-54 factor, core binding domain EP552_15755 PF00309 Sigma-54 factor, Activator interacting domain (AID) EP552_15800 PF00795 Carbon-nitrogen hydrolase EP552_15810 PF01047 MarR family EP552_15815 PF02566 OsmC-like protein EP552_15820 PF00437 Type II/IV secretion system protein EP552_15840 PF01367 5'-3' exonuclease, C-terminal SAM fold EP552_15840 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EP552_15840 PF00476 DNA polymerase family A EP552_15840 PF01612 3'-5' exonuclease EP552_15845 PF02325 YGGT family EP552_15850 PF03807 NADP oxidoreductase coenzyme F420-dependent EP552_15850 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP552_15855 PF11734 TilS substrate C-terminal domain EP552_15855 PF09179 TilS substrate binding domain EP552_15855 PF01171 PP-loop family EP552_15860 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EP552_15865 PF02541 Ppx/GppA phosphatase family EP552_15870 PF00085 Thioredoxin EP552_15875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP552_15875 PF07497 Rho termination factor, RNA-binding domain EP552_15875 PF07498 Rho termination factor, N-terminal domain EP552_15890 PF00216 Bacterial DNA-binding protein EP552_15895 PF03483 B3/4 domain EP552_15895 PF03484 tRNA synthetase B5 domain EP552_15895 PF03147 Ferredoxin-fold anticodon binding domain EP552_15895 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EP552_15895 PF01588 Putative tRNA binding domain EP552_15900 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EP552_15900 PF01409 tRNA synthetases class II core domain (F) EP552_15920 PF00453 Ribosomal protein L20 EP552_15925 PF01632 Ribosomal protein L35 EP552_15930 PF07690 Major Facilitator Superfamily EP552_15935 PF09335 SNARE associated Golgi protein EP552_15940 PF02798 Glutathione S-transferase, N-terminal domain EP552_15940 PF00043 Glutathione S-transferase, C-terminal domain EP552_15950 PF05198 Translation initiation factor IF-3, N-terminal domain EP552_15950 PF00707 Translation initiation factor IF-3, C-terminal domain EP552_15955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP552_15955 PF03129 Anticodon binding domain EP552_15955 PF02824 TGS domain EP552_15955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP552_15960 PF00501 AMP-binding enzyme EP552_15960 PF13193 AMP-binding enzyme C-terminal domain EP552_15965 PF04751 Protein of unknown function (DUF615) EP552_15970 PF00381 PTS HPr component phosphorylation site EP552_15975 PF03668 P-loop ATPase protein family EP552_15980 PF02569 Pantoate-beta-alanine ligase EP552_15985 PF02548 Ketopantoate hydroxymethyltransferase EP552_15990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EP552_15995 PF01743 Poly A polymerase head domain EP552_15995 PF12626 Polymerase A arginine-rich C-terminus EP552_15995 PF12627 Probable RNA and SrmB- binding site of polymerase A EP552_16005 PF03819 MazG nucleotide pyrophosphohydrolase domain EP552_16015 PF02824 TGS domain EP552_16015 PF04607 Region found in RelA / SpoT proteins EP552_16015 PF13291 ACT domain EP552_16020 PF05958 tRNA (Uracil-5-)-methyltransferase EP552_16030 PF00291 Pyridoxal-phosphate dependent enzyme EP552_16035 PF01627 Hpt domain EP552_16035 PF00512 His Kinase A (phospho-acceptor) domain EP552_16035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_16035 PF00672 HAMP domain EP552_16035 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP552_16035 PF00072 Response regulator receiver domain EP552_16040 PF00378 Enoyl-CoA hydratase/isomerase EP552_16045 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP552_16045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP552_16050 PF01261 Xylose isomerase-like TIM barrel EP552_16060 PF00106 short chain dehydrogenase EP552_16065 PF02233 NAD(P) transhydrogenase beta subunit EP552_16070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EP552_16075 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP552_16075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP552_16100 PF07690 Major Facilitator Superfamily EP552_16105 PF01207 Dihydrouridine synthase (Dus) EP552_16115 PF03466 LysR substrate binding domain EP552_16115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_16125 PF00899 ThiF family EP552_16135 PF00694 Aconitase C-terminal domain EP552_16135 PF00330 Aconitase family (aconitate hydratase) EP552_16140 PF01026 TatD related DNase EP552_16155 PF16658 Class II release factor RF3, C-terminal domain EP552_16155 PF03144 Elongation factor Tu domain 2 EP552_16155 PF00009 Elongation factor Tu GTP binding domain EP552_16180 PF03707 Bacterial signalling protein N terminal repeat EP552_16180 PF00990 Diguanylate cyclase, GGDEF domain EP552_16180 PF00563 EAL domain EP552_16185 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EP552_16185 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EP552_16190 PF10369 Small subunit of acetolactate synthase EP552_16195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP552_16195 PF00205 Thiamine pyrophosphate enzyme, central domain EP552_16195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP552_16205 PF00133 tRNA synthetases class I (I, L, M and V) EP552_16205 PF13603 Leucyl-tRNA synthetase, Domain 2 EP552_16205 PF09334 tRNA synthetases class I (M) EP552_16205 PF08264 Anticodon-binding domain of tRNA EP552_16220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP552_16225 PF02687 FtsX-like permease family EP552_16225 PF00005 ABC transporter EP552_16225 PF12704 MacB-like periplasmic core domain EP552_16230 PF02321 Outer membrane efflux protein EP552_16245 PF00929 Exonuclease EP552_16250 PF03193 RsgA GTPase EP552_16260 PF00462 Glutaredoxin EP552_16265 PF02556 Preprotein translocase subunit SecB EP552_16280 PF02801 Beta-ketoacyl synthase, C-terminal domain EP552_16280 PF00109 Beta-ketoacyl synthase, N-terminal domain EP552_16295 PF02801 Beta-ketoacyl synthase, C-terminal domain EP552_16295 PF00109 Beta-ketoacyl synthase, N-terminal domain EP552_16305 PF04820 Tryptophan halogenase EP552_16325 PF00221 Aromatic amino acid lyase EP552_16340 PF00501 AMP-binding enzyme EP552_16340 PF13193 AMP-binding enzyme C-terminal domain EP552_16350 PF00550 Phosphopantetheine attachment site EP552_16355 PF00550 Phosphopantetheine attachment site EP552_16370 PF01926 50S ribosome-binding GTPase EP552_16370 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EP552_16375 PF13360 PQQ-like domain EP552_16385 PF03129 Anticodon binding domain EP552_16385 PF13393 Histidyl-tRNA synthetase EP552_16390 PF04551 GcpE protein EP552_16395 PF13464 Domain of unknown function (DUF4115) EP552_16405 PF04055 Radical SAM superfamily EP552_16410 PF00334 Nucleoside diphosphate kinase EP552_16415 PF04384 Iron-sulphur cluster assembly EP552_16420 PF01569 PAP2 superfamily EP552_16425 PF13439 Glycosyltransferase Family 4 EP552_16425 PF00534 Glycosyl transferases group 1 EP552_16430 PF17804 Tail specific protease N-terminal domain EP552_16430 PF11818 C-terminal domain of tail specific protease (DUF3340) EP552_16430 PF00595 PDZ domain EP552_16430 PF03572 Peptidase family S41 EP552_16435 PF00933 Glycosyl hydrolase family 3 N terminal domain EP552_16445 PF00561 alpha/beta hydrolase fold EP552_16450 PF00171 Aldehyde dehydrogenase family EP552_16455 PF00171 Aldehyde dehydrogenase family EP552_16460 PF01202 Shikimate kinase EP552_16465 PF02447 GntP family permease EP552_16470 PF01081 KDPG and KHG aldolase EP552_16475 PF00920 Dehydratase family EP552_16480 PF00871 Acetokinase family EP552_16485 PF01515 Phosphate acetyl/butaryl transferase EP552_16485 PF07085 DRTGG domain EP552_16490 PF05683 Fumarase C-terminus EP552_16490 PF05681 Fumarate hydratase (Fumerase) EP552_16505 PF06689 ClpX C4-type zinc finger EP552_16505 PF10431 C-terminal, D2-small domain, of ClpB protein EP552_16505 PF07724 AAA domain (Cdc48 subfamily) EP552_16510 PF00574 Clp protease EP552_16515 PF05697 Bacterial trigger factor protein (TF) EP552_16515 PF05698 Bacterial trigger factor protein (TF) C-terminus EP552_16515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP552_16520 PF07715 TonB-dependent Receptor Plug Domain EP552_16520 PF00593 TonB dependent receptor EP552_16525 PF18331 PKHD-type hydroxylase C-terminal domain EP552_16525 PF13640 2OG-Fe(II) oxygenase superfamily EP552_16530 PF08502 LeuA allosteric (dimerisation) domain EP552_16530 PF00682 HMGL-like EP552_16535 PF00561 alpha/beta hydrolase fold EP552_16540 PF07021 Methionine biosynthesis protein MetW EP552_16540 PF00561 alpha/beta hydrolase fold EP552_16550 PF01725 Ham1 family EP552_16560 PF02416 mttA/Hcf106 family EP552_16565 PF02416 mttA/Hcf106 family EP552_16570 PF00902 Sec-independent protein translocase protein (TatC) EP552_16590 PF01790 Prolipoprotein diacylglyceryl transferase EP552_16605 PF00303 Thymidylate synthase EP552_16610 PF00186 Dihydrofolate reductase EP552_16620 PF01625 Peptide methionine sulfoxide reductase EP552_16630 PF01618 MotA/TolQ/ExbB proton channel family EP552_16640 PF01842 ACT domain EP552_16640 PF00551 Formyl transferase EP552_16650 PF00171 Aldehyde dehydrogenase family EP552_16655 PF00830 Ribosomal L28 family EP552_16660 PF00471 Ribosomal protein L33 EP552_16665 PF00999 Sodium/hydrogen exchanger family EP552_16665 PF02254 TrkA-N domain EP552_16685 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) EP552_16690 PF00580 UvrD/REP helicase N-terminal domain EP552_16690 PF13361 UvrD-like helicase C-terminal domain EP552_16705 PF01751 Toprim domain EP552_16705 PF01396 Topoisomerase DNA binding C4 zinc finger EP552_16705 PF01131 DNA topoisomerase EP552_16705 PF08272 Topoisomerase I zinc-ribbon-like EP552_16715 PF01638 HxlR-like helix-turn-helix EP552_16720 PF08240 Alcohol dehydrogenase GroES-like domain EP552_16720 PF00107 Zinc-binding dehydrogenase EP552_16735 PF01810 LysE type translocator EP552_16740 PF03279 Bacterial lipid A biosynthesis acyltransferase EP552_16750 PF00375 Sodium:dicarboxylate symporter family EP552_16760 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP552_16760 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP552_16780 PF01416 tRNA pseudouridine synthase EP552_16790 PF01176 Translation initiation factor 1A / IF-1 EP552_16805 PF00180 Isocitrate/isopropylmalate dehydrogenase EP552_16815 PF00694 Aconitase C-terminal domain EP552_16820 PF00330 Aconitase family (aconitate hydratase) EP552_16830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_16830 PF03466 LysR substrate binding domain EP552_16850 PF00293 NUDIX domain EP552_16855 PF00391 PEP-utilising enzyme, mobile domain EP552_16855 PF02896 PEP-utilising enzyme, TIM barrel domain EP552_16855 PF01590 GAF domain EP552_16855 PF05524 PEP-utilising enzyme, N-terminal EP552_16860 PF00141 Peroxidase EP552_16865 PF12706 Beta-lactamase superfamily domain EP552_16870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_16870 PF03466 LysR substrate binding domain EP552_16875 PF13737 Transposase DDE domain EP552_16885 PF02798 Glutathione S-transferase, N-terminal domain EP552_16890 PF13280 WYL domain EP552_16890 PF08279 HTH domain EP552_16895 PF13419 Haloacid dehalogenase-like hydrolase EP552_16900 PF01479 S4 domain EP552_16900 PF00849 RNA pseudouridylate synthase EP552_16910 PF12111 Polyribonucleotide phosphorylase C terminal EP552_16910 PF10150 Ribonuclease E/G family EP552_16910 PF00575 S1 RNA binding domain EP552_16915 PF00501 AMP-binding enzyme EP552_16915 PF13193 AMP-binding enzyme C-terminal domain EP552_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP552_16930 PF03466 LysR substrate binding domain EP552_16935 PF00106 short chain dehydrogenase EP552_16940 PF04055 Radical SAM superfamily EP552_16940 PF06969 HemN C-terminal domain EP552_16950 PF01554 MatE EP552_16955 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_16955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_16955 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP552_16960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_16960 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP552_16965 PF03109 ABC1 family EP552_16970 PF01197 Ribosomal protein L31 EP552_16985 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EP552_17005 PF03884 DNA gyrase inhibitor YacG EP552_17010 PF00753 Metallo-beta-lactamase superfamily EP552_17015 PF00762 Ferrochelatase EP552_17025 PF01177 Asp/Glu/Hydantoin racemase EP552_17040 PF01206 Sulfurtransferase TusA EP552_17045 PF03471 Transporter associated domain EP552_17045 PF00571 CBS domain EP552_17050 PF00795 Carbon-nitrogen hydrolase EP552_17055 PF01588 Putative tRNA binding domain EP552_17065 PF08334 Type II secretion system (T2SS), protein G EP552_17065 PF07963 Prokaryotic N-terminal methylation motif EP552_17070 PF00482 Type II secretion system (T2SS), protein F EP552_17075 PF00270 DEAD/DEAH box helicase EP552_17075 PF00271 Helicase conserved C-terminal domain EP552_17075 PF17764 3′ DNA-binding domain (3′BD) EP552_17075 PF18074 Primosomal protein N C-terminal domain EP552_17075 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EP552_17080 PF02254 TrkA-N domain EP552_17080 PF00999 Sodium/hydrogen exchanger family EP552_17085 PF01430 Hsp33 protein EP552_17095 PF00226 DnaJ domain EP552_17095 PF01556 DnaJ C terminal domain EP552_17105 PF01544 CorA-like Mg2+ transporter protein EP552_17110 PF00013 KH domain EP552_17110 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EP552_17110 PF01138 3' exoribonuclease family, domain 1 EP552_17110 PF03725 3' exoribonuclease family, domain 2 EP552_17110 PF00575 S1 RNA binding domain EP552_17115 PF00312 Ribosomal protein S15 EP552_17125 PF13538 UvrD-like helicase C-terminal domain EP552_17130 PF12705 PD-(D/E)XK nuclease superfamily EP552_17130 PF00580 UvrD/REP helicase N-terminal domain EP552_17130 PF13361 UvrD-like helicase C-terminal domain EP552_17135 PF17946 RecC C-terminal domain EP552_17145 PF03976 Polyphosphate kinase 2 (PPK2) EP552_17155 PF01209 ubiE/COQ5 methyltransferase family EP552_17165 PF03109 ABC1 family EP552_17170 PF01494 FAD binding domain EP552_17175 PF01502 Phosphoribosyl-AMP cyclohydrolase EP552_17190 PF13244 Domain of unknown function (DUF4040) EP552_17190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP552_17190 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EP552_17190 PF00361 Proton-conducting membrane transporter EP552_17195 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP552_17200 PF00361 Proton-conducting membrane transporter EP552_17210 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EP552_17220 PF02033 Ribosome-binding factor A EP552_17225 PF11987 Translation-initiation factor 2 EP552_17225 PF00009 Elongation factor Tu GTP binding domain EP552_17225 PF04760 Translation initiation factor IF-2, N-terminal region EP552_17225 PF08364 Bacterial translation initiation factor IF-2 associated region EP552_17230 PF08529 NusA N-terminal domain EP552_17230 PF13184 NusA-like KH domain EP552_17230 PF00575 S1 RNA binding domain EP552_17235 PF17384 RimP C-terminal SH3 domain EP552_17235 PF02576 RimP N-terminal domain EP552_17255 PF03840 Preprotein translocase SecG subunit EP552_17260 PF00121 Triosephosphate isomerase EP552_17265 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EP552_17265 PF00437 Type II/IV secretion system protein EP552_17270 PF00482 Type II secretion system (T2SS), protein F EP552_17275 PF06750 Bacterial Peptidase A24 N-terminal domain EP552_17275 PF01478 Type IV leader peptidase family EP552_17280 PF01121 Dephospho-CoA kinase EP552_17290 PF00588 SpoU rRNA Methylase family EP552_17290 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP552_17295 PF06865 Pyrimidine/purine nucleoside phosphorylase EP552_17305 PF02463 RecF/RecN/SMC N terminal domain EP552_17310 PF02622 Uncharacterized ACR, COG1678 EP552_17315 PF03652 Holliday junction resolvase EP552_17320 PF13533 Biotin-lipoyl like EP552_17345 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP552_17345 PF02805 Metal binding domain of Ada EP552_17345 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP552_17345 PF12833 Helix-turn-helix domain EP552_17350 PF01066 CDP-alcohol phosphatidyltransferase EP552_17360 PF01541 GIY-YIG catalytic domain EP552_17360 PF02151 UvrB/uvrC motif EP552_17360 PF08459 UvrC Helix-hairpin-helix N-terminal EP552_17385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP552_17385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP552_17385 PF00378 Enoyl-CoA hydratase/isomerase EP552_17390 PF00108 Thiolase, N-terminal domain EP552_17390 PF02803 Thiolase, C-terminal domain EP552_17410 PF00376 MerR family regulatory protein EP552_17410 PF09278 MerR, DNA binding EP552_17420 PF01323 DSBA-like thioredoxin domain EP552_17435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_17435 PF00183 Hsp90 protein EP552_17450 PF13726 Na+-H+ antiporter family EP552_17450 PF03553 Na+/H+ antiporter family EP552_17455 PF00561 alpha/beta hydrolase fold EP552_17480 PF05000 RNA polymerase Rpb1, domain 4 EP552_17480 PF04998 RNA polymerase Rpb1, domain 5 EP552_17480 PF04997 RNA polymerase Rpb1, domain 1 EP552_17480 PF00623 RNA polymerase Rpb1, domain 2 EP552_17480 PF04983 RNA polymerase Rpb1, domain 3 EP552_17485 PF00562 RNA polymerase Rpb2, domain 6 EP552_17485 PF10385 RNA polymerase beta subunit external 1 domain EP552_17485 PF04565 RNA polymerase Rpb2, domain 3 EP552_17485 PF04563 RNA polymerase beta subunit EP552_17485 PF04560 RNA polymerase Rpb2, domain 7 EP552_17485 PF04561 RNA polymerase Rpb2, domain 2 EP552_17490 PF00542 Ribosomal protein L7/L12 C-terminal domain EP552_17490 PF16320 Ribosomal protein L7/L12 dimerisation domain EP552_17495 PF00466 Ribosomal protein L10 EP552_17500 PF00687 Ribosomal protein L1p/L10e family EP552_17505 PF03946 Ribosomal protein L11, N-terminal domain EP552_17505 PF00298 Ribosomal protein L11, RNA binding domain EP552_17510 PF02357 Transcription termination factor nusG EP552_17510 PF00467 KOW motif EP552_17515 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP552_17525 PF03144 Elongation factor Tu domain 2 EP552_17525 PF03143 Elongation factor Tu C-terminal domain EP552_17525 PF00009 Elongation factor Tu GTP binding domain EP552_17550 PF00425 chorismate binding enzyme EP552_17550 PF04715 Anthranilate synthase component I, N terminal region EP552_17555 PF13419 Haloacid dehalogenase-like hydrolase EP552_17560 PF12401 Protein of unknown function (DUF2662) EP552_17560 PF00498 FHA domain EP552_17565 PF00263 Bacterial type II and III secretion system protein EP552_17565 PF03958 Bacterial type II/III secretion system short domain EP552_17580 PF00816 H-NS histone family EP552_17605 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EP552_17605 PF03900 Porphobilinogen deaminase, C-terminal domain EP552_17610 PF04397 LytTr DNA-binding domain EP552_17610 PF00072 Response regulator receiver domain EP552_17615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_17615 PF07694 5TMR of 5TMR-LYT EP552_17615 PF06580 Histidine kinase EP552_17620 PF00206 Lyase EP552_17620 PF14698 Argininosuccinate lyase C-terminal EP552_17625 PF04362 Bacterial Fe(2+) trafficking EP552_17630 PF01895 PhoU domain EP552_17635 PF02321 Outer membrane efflux protein EP552_17640 PF00892 EamA-like transporter family EP552_17655 PF13667 ThiC-associated domain EP552_17655 PF01964 Radical SAM ThiC family EP552_17660 PF00293 NUDIX domain EP552_17665 PF00149 Calcineurin-like phosphoesterase EP552_17670 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP552_17675 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP552_17680 PF01098 Cell cycle protein EP552_17685 PF08245 Mur ligase middle domain EP552_17685 PF02875 Mur ligase family, glutamate ligase domain EP552_17695 PF07664 Ferrous iron transport protein B C terminus EP552_17695 PF02421 Ferrous iron transport protein B EP552_17695 PF07670 Nucleoside recognition EP552_17705 PF00589 Phage integrase family EP552_17705 PF02899 Phage integrase, N-terminal SAM-like domain EP552_17710 PF10411 Disulfide bond isomerase protein N-terminus EP552_17710 PF13098 Thioredoxin-like domain EP552_17715 PF01842 ACT domain EP552_17715 PF03447 Homoserine dehydrogenase, NAD binding domain EP552_17715 PF00742 Homoserine dehydrogenase EP552_17720 PF00291 Pyridoxal-phosphate dependent enzyme EP552_17725 PF00768 D-alanyl-D-alanine carboxypeptidase EP552_17730 PF00072 Response regulator receiver domain EP552_17730 PF00196 Bacterial regulatory proteins, luxR family EP552_17735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP552_17735 PF00512 His Kinase A (phospho-acceptor) domain EP552_17740 PF00158 Sigma-54 interaction domain EP552_17740 PF00072 Response regulator receiver domain EP552_17740 PF02954 Bacterial regulatory protein, Fis family EP552_17745 PF00595 PDZ domain EP552_17745 PF03572 Peptidase family S41 EP552_17750 PF01676 Metalloenzyme superfamily EP552_17750 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EP552_17755 PF03739 Lipopolysaccharide export system permease LptF/LptG EP552_17765 PF02789 Cytosol aminopeptidase family, N-terminal domain EP552_17765 PF00883 Cytosol aminopeptidase family, catalytic domain EP552_17785 PF00677 Lumazine binding domain EP552_17795 PF01872 RibD C-terminal domain EP552_17795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP552_17800 PF03477 ATP cone domain EP552_17805 PF00909 Ammonium Transporter Family EP552_17810 PF00543 Nitrogen regulatory protein P-II EP552_17820 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP552_17820 PF01078 Magnesium chelatase, subunit ChlI EP552_17830 PF01636 Phosphotransferase enzyme family EP552_17835 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EP552_17860 PF02909 Tetracyclin repressor-like, C-terminal domain EP552_17860 PF00440 Bacterial regulatory proteins, tetR family EP552_17865 PF07690 Major Facilitator Superfamily EP552_17875 PF00916 Sulfate permease family EP552_17875 PF01740 STAS domain EP552_17880 PF00582 Universal stress protein family EP552_17910 PF00665 Integrase core domain EP552_17920 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP552_17920 PF01078 Magnesium chelatase, subunit ChlI EP552_17925 PF00392 Bacterial regulatory proteins, gntR family EP552_17925 PF00155 Aminotransferase class I and II EP552_17935 PF00701 Dihydrodipicolinate synthetase family EP552_17950 PF03573 outer membrane porin, OprD family EP552_17955 PF00719 Inorganic pyrophosphatase EP552_17970 PF00501 AMP-binding enzyme EP552_17970 PF13193 AMP-binding enzyme C-terminal domain EP552_17975 PF00521 DNA gyrase/topoisomerase IV, subunit A EP552_17975 PF03989 DNA gyrase C-terminal domain, beta-propeller EP552_17980 PF07690 Major Facilitator Superfamily EP552_17985 PF03458 UPF0126 domain EP552_17990 PF02810 SEC-C motif EP552_17995 PF03741 Integral membrane protein TerC family EP552_17995 PF03471 Transporter associated domain EP552_18000 PF03641 Possible lysine decarboxylase EP552_18005 PF07690 Major Facilitator Superfamily EP552_18015 PF11798 IMS family HHH motif EP552_18015 PF11799 impB/mucB/samB family C-terminal domain EP552_18015 PF00817 impB/mucB/samB family EP552_18030 PF08497 Radical SAM N-terminal EP552_18030 PF04055 Radical SAM superfamily EP552_18030 PF11842 Domain of unknown function (DUF3362) EP552_18050 PF03358 NADPH-dependent FMN reductase EP552_18060 PF00291 Pyridoxal-phosphate dependent enzyme EP552_18095 PF00440 Bacterial regulatory proteins, tetR family EP552_18120 PF01327 Polypeptide deformylase EP552_18130 PF17782 DprA winged helix domain EP552_18130 PF02481 DNA recombination-mediator protein A EP552_18135 PF01300 Telomere recombination EP552_18140 PF00892 EamA-like transporter family EP552_18145 PF00440 Bacterial regulatory proteins, tetR family EP552_18150 PF07690 Major Facilitator Superfamily EP552_18160 PF00255 Glutathione peroxidase EP552_18170 PF11008 Protein of unknown function (DUF2846) EP552_18175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EP552_18180 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP552_18180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP552_18185 PF00231 ATP synthase EP552_18190 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP552_18190 PF00306 ATP synthase alpha/beta chain, C terminal domain EP552_18190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP552_18195 PF00213 ATP synthase delta (OSCP) subunit EP552_18200 PF00430 ATP synthase B/B' CF(0) EP552_18205 PF00137 ATP synthase subunit C EP552_18210 PF00119 ATP synthase A chain EP552_18230 PF00005 ABC transporter EP552_18235 PF00950 ABC 3 transport family EP552_18240 PF01810 LysE type translocator EP552_18245 PF04261 Dyp-type peroxidase family EP552_18250 PF03949 Malic enzyme, NAD binding domain EP552_18250 PF00390 Malic enzyme, N-terminal domain EP552_18255 PF00750 tRNA synthetases class I (R) EP552_18255 PF03485 Arginyl tRNA synthetase N terminal domain EP552_18255 PF05746 DALR anticodon binding domain EP552_18275 PF05726 Pirin C-terminal cupin domain EP552_18275 PF02678 Pirin EP552_18285 PF03551 Transcriptional regulator PadR-like family EP552_18305 PF01909 Nucleotidyltransferase domain EP552_18305 PF13427 Domain of unknown function (DUF4111) EP552_18310 PF00958 GMP synthase C terminal domain EP552_18310 PF02540 NAD synthase EP552_18310 PF00117 Glutamine amidotransferase class-I EP552_18315 PF04286 Protein of unknown function (DUF445) EP552_18320 PF07681 DoxX EP552_18325 PF09335 SNARE associated Golgi protein EP552_18340 PF13614 AAA domain EP552_18350 PF01722 BolA-like protein EP552_18360 PF01648 4'-phosphopantetheinyl transferase superfamily EP552_18365 PF16363 GDP-mannose 4,6 dehydratase EP552_18380 PF00668 Condensation domain EP552_18380 PF00975 Thioesterase domain EP552_18380 PF00550 Phosphopantetheine attachment site EP552_18380 PF13193 AMP-binding enzyme C-terminal domain EP552_18380 PF00501 AMP-binding enzyme EP552_18385 PF00975 Thioesterase domain EP552_18385 PF14765 Polyketide synthase dehydratase EP552_18385 PF00550 Phosphopantetheine attachment site EP552_18385 PF08242 Methyltransferase domain EP552_18385 PF02801 Beta-ketoacyl synthase, C-terminal domain EP552_18385 PF00109 Beta-ketoacyl synthase, N-terminal domain EP552_18385 PF16197 Ketoacyl-synthetase C-terminal extension EP552_18390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_18390 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_18390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_18395 PF00501 AMP-binding enzyme EP552_18400 PF00196 Bacterial regulatory proteins, luxR family EP552_18400 PF03472 Autoinducer binding domain EP552_18410 PF00765 Autoinducer synthase EP552_18415 PF00083 Sugar (and other) transporter EP552_18415 PF07690 Major Facilitator Superfamily EP552_18420 PF00378 Enoyl-CoA hydratase/isomerase EP552_18425 PF00378 Enoyl-CoA hydratase/isomerase EP552_18430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP552_18430 PF02770 Acyl-CoA dehydrogenase, middle domain EP552_18430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP552_18435 PF00501 AMP-binding enzyme EP552_18435 PF13193 AMP-binding enzyme C-terminal domain EP552_18440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP552_18440 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP552_18445 PF00171 Aldehyde dehydrogenase family EP552_18455 PF00324 Amino acid permease EP552_18460 PF00324 Amino acid permease EP552_18465 PF01042 Endoribonuclease L-PSP EP552_18470 PF01168 Alanine racemase, N-terminal domain EP552_18470 PF00842 Alanine racemase, C-terminal domain EP552_18475 PF01266 FAD dependent oxidoreductase EP552_18480 PF01037 Lrp/AsnC ligand binding domain EP552_18490 PF00593 TonB dependent receptor EP552_18490 PF07715 TonB-dependent Receptor Plug Domain EP552_18505 PF00849 RNA pseudouridylate synthase EP552_18555 PF00330 Aconitase family (aconitate hydratase) EP552_18555 PF00694 Aconitase C-terminal domain EP552_18560 PF00285 Citrate synthase, C-terminal domain EP552_18570 PF07729 FCD domain EP552_18570 PF00392 Bacterial regulatory proteins, gntR family EP552_18580 PF00155 Aminotransferase class I and II EP552_18585 PF01565 FAD binding domain EP552_18585 PF09330 D-lactate dehydrogenase, membrane binding EP552_18590 PF01070 FMN-dependent dehydrogenase EP552_18595 PF00392 Bacterial regulatory proteins, gntR family EP552_18595 PF07729 FCD domain EP552_18600 PF02652 L-lactate permease EP552_18605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP552_18605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP552_18605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP552_18605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP552_18615 PF16363 GDP-mannose 4,6 dehydratase EP552_18620 PF00342 Phosphoglucose isomerase EP552_18625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP552_18625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP552_18625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP552_18630 PF00483 Nucleotidyl transferase EP552_18635 PF02397 Bacterial sugar transferase EP552_18640 PF00535 Glycosyl transferase family 2 EP552_18645 PF00534 Glycosyl transferases group 1 EP552_18665 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_18665 PF12464 Maltose acetyltransferase EP552_18665 PF14602 Hexapeptide repeat of succinyl-transferase EP552_18675 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP552_18680 PF00132 Bacterial transferase hexapeptide (six repeats) EP552_18685 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP552_18685 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP552_18690 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP552_18690 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP552_18690 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP552_18695 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EP552_18695 PF10531 SLBB domain EP552_18695 PF02563 Polysaccharide biosynthesis/export protein EP552_18700 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP552_18705 PF13614 AAA domain EP552_18705 PF02706 Chain length determinant protein EP552_18705 PF13807 G-rich domain on putative tyrosine kinase EP552_18710 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP552_18710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP552_18715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP552_18715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP552_18720 PF03023 Lipid II flippase MurJ EP552_18725 PF01510 N-acetylmuramoyl-L-alanine amidase EP552_18730 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EP552_18730 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EP552_18740 PF04185 Phosphoesterase family EP552_18740 PF05506 Domain of unknown function (DUF756) EP552_18745 PF03725 3' exoribonuclease family, domain 2 EP552_18745 PF01138 3' exoribonuclease family, domain 1 EP552_18750 PF00487 Fatty acid desaturase EP552_18755 PF00175 Oxidoreductase NAD-binding domain EP552_18760 PF00440 Bacterial regulatory proteins, tetR family EP552_18765 PF00440 Bacterial regulatory proteins, tetR family EP552_18765 PF08360 QacR-like protein, C-terminal region EP552_18770 PF01323 DSBA-like thioredoxin domain EP552_18780 PF13419 Haloacid dehalogenase-like hydrolase EP552_18785 PF00106 short chain dehydrogenase EP552_18800 PF00696 Amino acid kinase family EP552_18800 PF00583 Acetyltransferase (GNAT) family EP552_18805 PF09084 NMT1/THI5 like EP552_18810 PF09084 NMT1/THI5 like EP552_18815 PF00296 Luciferase-like monooxygenase EP552_18820 PF00528 Binding-protein-dependent transport system inner membrane component EP552_18825 PF00005 ABC transporter EP552_18830 PF08362 YcdC-like protein, C-terminal region EP552_18830 PF00440 Bacterial regulatory proteins, tetR family EP552_18835 PF01048 Phosphorylase superfamily EP552_18845 PF06574 FAD synthetase EP552_18845 PF01687 Riboflavin kinase EP552_18850 PF08264 Anticodon-binding domain of tRNA EP552_18850 PF00133 tRNA synthetases class I (I, L, M and V) EP552_18850 PF06827 Zinc finger found in FPG and IleRS EP552_18855 PF01252 Signal peptidase (SPase) II EP552_18860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP552_18900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP552_18905 PF07859 alpha/beta hydrolase fold EP552_18930 PF01025 GrpE EP552_18935 PF00012 Hsp70 protein EP552_18955 PF13406 Transglycosylase SLT domain EP552_18960 PF02222 ATP-grasp domain EP552_18960 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EP552_18965 PF00731 AIR carboxylase EP552_18980 PF08245 Mur ligase middle domain EP552_18980 PF02875 Mur ligase family, glutamate ligase domain EP552_18980 PF01225 Mur ligase family, catalytic domain EP552_18990 PF01569 PAP2 superfamily EP552_18995 PF03741 Integral membrane protein TerC family EP552_19005 PF03738 Glutathionylspermidine synthase preATP-grasp EP552_19010 PF00355 Rieske [2Fe-2S] domain EP552_19015 PF01979 Amidohydrolase family EP552_19020 PF00156 Phosphoribosyl transferase domain EP552_19030 PF13098 Thioredoxin-like domain EP552_19030 PF10411 Disulfide bond isomerase protein N-terminus EP552_19035 PF16916 Dimerisation domain of Zinc Transporter EP552_19035 PF01545 Cation efflux family EP552_19040 PF02583 Metal-sensitive transcriptional repressor EP552_19045 PF10396 GTP-binding protein TrmE N-terminus EP552_19045 PF12631 MnmE helical domain EP552_19045 PF01926 50S ribosome-binding GTPase EP552_19050 PF02096 60Kd inner membrane protein EP552_19050 PF14849 YidC periplasmic domain EP552_19055 PF01809 Putative membrane protein insertion efficiency factor EP552_19060 PF00825 Ribonuclease P EP552_19065 PF00468 Ribosomal protein L34 EP552_19120 PF00565 Staphylococcal nuclease homologue EP552_19130 PF00905 Penicillin binding protein transpeptidase domain EP552_19140 PF00816 H-NS histone family EP552_19195 PF13614 AAA domain EP552_19200 PF02195 ParB-like nuclease domain EP552_19200 PF17762 HTH domain found in ParB protein EP552_19220 PF05816 Toxic anion resistance protein (TelA) EP552_19325 PF00226 DnaJ domain EP552_19325 PF00684 DnaJ central domain EP552_19325 PF01556 DnaJ C terminal domain EP552_19360 PF18272 single-stranded DNA binding TraI N-terminal subdomain EP552_19360 PF18340 DNA relaxase TraI 2B/2B-like domain EP552_19360 PF08751 TrwC relaxase EP552_19360 PF07057 DNA helicase TraI EP552_19395 PF00665 Integrase core domain EP552_19395 PF13936 Helix-turn-helix domain EP552_19400 PF01636 Phosphotransferase enzyme family EP552_19405 PF13936 Helix-turn-helix domain EP552_19405 PF00665 Integrase core domain EP552_19420 PF02796 Helix-turn-helix domain of resolvase EP552_19420 PF00239 Resolvase, N terminal domain EP552_19435 PF01464 Transglycosylase SLT domain EP552_19470 PF13098 Thioredoxin-like domain EP552_19470 PF10411 Disulfide bond isomerase protein N-terminus EP552_19505 PF06834 TraU protein EP552_19515 PF06986 Type-1V conjugative transfer system mating pair stabilisation EP552_19530 PF06122 Conjugative relaxosome accessory transposon protein EP552_19550 PF00817 impB/mucB/samB family EP552_19550 PF11798 IMS family HHH motif EP552_19550 PF11799 impB/mucB/samB family C-terminal domain EP552_19550 PF13438 Domain of unknown function (DUF4113) EP552_19570 PF01051 Initiator Replication protein EP552_19595 PF00593 TonB dependent receptor EP552_19595 PF07715 TonB-dependent Receptor Plug Domain EP552_19605 PF13936 Helix-turn-helix domain EP552_19605 PF00665 Integrase core domain