locus-tag class description EP560_00005 PF00308 Bacterial dnaA protein EP560_00005 PF08299 Bacterial dnaA protein helix-turn-helix EP560_00005 PF11638 DnaA N-terminal domain EP560_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EP560_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EP560_00010 PF02767 DNA polymerase III beta subunit, central domain EP560_00015 PF02463 RecF/RecN/SMC N terminal domain EP560_00020 PF00204 DNA gyrase B EP560_00020 PF00986 DNA gyrase B subunit, carboxyl terminus EP560_00020 PF18053 DNA gyrase B subunit insert domain EP560_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_00020 PF01751 Toprim domain EP560_00030 PF09335 SNARE associated Golgi protein EP560_00035 PF12848 ABC transporter EP560_00035 PF00005 ABC transporter EP560_00055 PF01521 Iron-sulphur cluster biosynthesis EP560_00060 PF00561 alpha/beta hydrolase fold EP560_00065 PF03702 Anhydro-N-acetylmuramic acid kinase EP560_00070 PF00579 tRNA synthetases class I (W and Y) EP560_00110 PF00291 Pyridoxal-phosphate dependent enzyme EP560_00120 PF03358 NADPH-dependent FMN reductase EP560_00140 PF11842 Domain of unknown function (DUF3362) EP560_00140 PF04055 Radical SAM superfamily EP560_00140 PF08497 Radical SAM N-terminal EP560_00155 PF11798 IMS family HHH motif EP560_00155 PF00817 impB/mucB/samB family EP560_00155 PF11799 impB/mucB/samB family C-terminal domain EP560_00165 PF07690 Major Facilitator Superfamily EP560_00170 PF03641 Possible lysine decarboxylase EP560_00175 PF03741 Integral membrane protein TerC family EP560_00175 PF03471 Transporter associated domain EP560_00180 PF02810 SEC-C motif EP560_00185 PF03458 UPF0126 domain EP560_00190 PF07690 Major Facilitator Superfamily EP560_00195 PF00521 DNA gyrase/topoisomerase IV, subunit A EP560_00195 PF03989 DNA gyrase C-terminal domain, beta-propeller EP560_00200 PF13193 AMP-binding enzyme C-terminal domain EP560_00200 PF00501 AMP-binding enzyme EP560_00215 PF00719 Inorganic pyrophosphatase EP560_00220 PF03573 outer membrane porin, OprD family EP560_00235 PF00701 Dihydrodipicolinate synthetase family EP560_00245 PF00392 Bacterial regulatory proteins, gntR family EP560_00245 PF00155 Aminotransferase class I and II EP560_00250 PF01078 Magnesium chelatase, subunit ChlI EP560_00250 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP560_00260 PF00665 Integrase core domain EP560_00290 PF00582 Universal stress protein family EP560_00295 PF01740 STAS domain EP560_00295 PF00916 Sulfate permease family EP560_00305 PF07690 Major Facilitator Superfamily EP560_00310 PF00440 Bacterial regulatory proteins, tetR family EP560_00310 PF02909 Tetracyclin repressor-like, C-terminal domain EP560_00335 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EP560_00340 PF01636 Phosphotransferase enzyme family EP560_00350 PF01078 Magnesium chelatase, subunit ChlI EP560_00350 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP560_00360 PF00543 Nitrogen regulatory protein P-II EP560_00365 PF00909 Ammonium Transporter Family EP560_00370 PF03477 ATP cone domain EP560_00375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP560_00375 PF01872 RibD C-terminal domain EP560_00385 PF00677 Lumazine binding domain EP560_00405 PF02789 Cytosol aminopeptidase family, N-terminal domain EP560_00405 PF00883 Cytosol aminopeptidase family, catalytic domain EP560_00415 PF03739 Lipopolysaccharide export system permease LptF/LptG EP560_00420 PF01676 Metalloenzyme superfamily EP560_00420 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EP560_00425 PF00595 PDZ domain EP560_00425 PF03572 Peptidase family S41 EP560_00430 PF00158 Sigma-54 interaction domain EP560_00430 PF00072 Response regulator receiver domain EP560_00430 PF02954 Bacterial regulatory protein, Fis family EP560_00435 PF00512 His Kinase A (phospho-acceptor) domain EP560_00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_00440 PF00072 Response regulator receiver domain EP560_00440 PF00196 Bacterial regulatory proteins, luxR family EP560_00445 PF00768 D-alanyl-D-alanine carboxypeptidase EP560_00450 PF00291 Pyridoxal-phosphate dependent enzyme EP560_00455 PF03447 Homoserine dehydrogenase, NAD binding domain EP560_00455 PF00742 Homoserine dehydrogenase EP560_00455 PF01842 ACT domain EP560_00460 PF13098 Thioredoxin-like domain EP560_00460 PF10411 Disulfide bond isomerase protein N-terminus EP560_00465 PF02899 Phage integrase, N-terminal SAM-like domain EP560_00465 PF00589 Phage integrase family EP560_00475 PF07670 Nucleoside recognition EP560_00475 PF07664 Ferrous iron transport protein B C terminus EP560_00475 PF02421 Ferrous iron transport protein B EP560_00485 PF08245 Mur ligase middle domain EP560_00485 PF02875 Mur ligase family, glutamate ligase domain EP560_00490 PF01098 Cell cycle protein EP560_00495 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP560_00500 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP560_00505 PF00149 Calcineurin-like phosphoesterase EP560_00510 PF00293 NUDIX domain EP560_00515 PF01964 Radical SAM ThiC family EP560_00515 PF13667 ThiC-associated domain EP560_00530 PF00892 EamA-like transporter family EP560_00535 PF02321 Outer membrane efflux protein EP560_00540 PF01895 PhoU domain EP560_00545 PF04362 Bacterial Fe(2+) trafficking EP560_00550 PF14698 Argininosuccinate lyase C-terminal EP560_00550 PF00206 Lyase EP560_00555 PF07694 5TMR of 5TMR-LYT EP560_00555 PF06580 Histidine kinase EP560_00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_00560 PF00072 Response regulator receiver domain EP560_00560 PF04397 LytTr DNA-binding domain EP560_00565 PF03900 Porphobilinogen deaminase, C-terminal domain EP560_00565 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EP560_00590 PF00816 H-NS histone family EP560_00605 PF03958 Bacterial type II/III secretion system short domain EP560_00605 PF00263 Bacterial type II and III secretion system protein EP560_00610 PF00498 FHA domain EP560_00610 PF12401 Protein of unknown function (DUF2662) EP560_00615 PF13419 Haloacid dehalogenase-like hydrolase EP560_00620 PF04715 Anthranilate synthase component I, N terminal region EP560_00620 PF00425 chorismate binding enzyme EP560_00645 PF03144 Elongation factor Tu domain 2 EP560_00645 PF00009 Elongation factor Tu GTP binding domain EP560_00645 PF03143 Elongation factor Tu C-terminal domain EP560_00655 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP560_00660 PF00467 KOW motif EP560_00660 PF02357 Transcription termination factor nusG EP560_00665 PF00298 Ribosomal protein L11, RNA binding domain EP560_00665 PF03946 Ribosomal protein L11, N-terminal domain EP560_00670 PF00687 Ribosomal protein L1p/L10e family EP560_00675 PF00466 Ribosomal protein L10 EP560_00680 PF16320 Ribosomal protein L7/L12 dimerisation domain EP560_00680 PF00542 Ribosomal protein L7/L12 C-terminal domain EP560_00685 PF04563 RNA polymerase beta subunit EP560_00685 PF04561 RNA polymerase Rpb2, domain 2 EP560_00685 PF04565 RNA polymerase Rpb2, domain 3 EP560_00685 PF10385 RNA polymerase beta subunit external 1 domain EP560_00685 PF00562 RNA polymerase Rpb2, domain 6 EP560_00685 PF04560 RNA polymerase Rpb2, domain 7 EP560_00690 PF04983 RNA polymerase Rpb1, domain 3 EP560_00690 PF04997 RNA polymerase Rpb1, domain 1 EP560_00690 PF04998 RNA polymerase Rpb1, domain 5 EP560_00690 PF00623 RNA polymerase Rpb1, domain 2 EP560_00690 PF05000 RNA polymerase Rpb1, domain 4 EP560_00715 PF00561 alpha/beta hydrolase fold EP560_00720 PF03553 Na+/H+ antiporter family EP560_00720 PF13726 Na+-H+ antiporter family EP560_00735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_00735 PF00183 Hsp90 protein EP560_00750 PF01323 DSBA-like thioredoxin domain EP560_00760 PF09278 MerR, DNA binding EP560_00760 PF00376 MerR family regulatory protein EP560_00780 PF02803 Thiolase, C-terminal domain EP560_00780 PF00108 Thiolase, N-terminal domain EP560_00785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_00785 PF00378 Enoyl-CoA hydratase/isomerase EP560_00785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_00810 PF08459 UvrC Helix-hairpin-helix N-terminal EP560_00810 PF02151 UvrB/uvrC motif EP560_00810 PF01541 GIY-YIG catalytic domain EP560_00820 PF01066 CDP-alcohol phosphatidyltransferase EP560_00825 PF02805 Metal binding domain of Ada EP560_00825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP560_00825 PF12833 Helix-turn-helix domain EP560_00825 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP560_00850 PF13533 Biotin-lipoyl like EP560_00855 PF03652 Holliday junction resolvase EP560_00860 PF02622 Uncharacterized ACR, COG1678 EP560_00865 PF02463 RecF/RecN/SMC N terminal domain EP560_00875 PF06865 Pyrimidine/purine nucleoside phosphorylase EP560_00880 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP560_00880 PF00588 SpoU rRNA Methylase family EP560_00890 PF01121 Dephospho-CoA kinase EP560_00895 PF06750 Bacterial Peptidase A24 N-terminal domain EP560_00895 PF01478 Type IV leader peptidase family EP560_00900 PF00482 Type II secretion system (T2SS), protein F EP560_00905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EP560_00905 PF00437 Type II/IV secretion system protein EP560_00910 PF00121 Triosephosphate isomerase EP560_00915 PF03840 Preprotein translocase SecG subunit EP560_00935 PF17384 RimP C-terminal SH3 domain EP560_00935 PF02576 RimP N-terminal domain EP560_00940 PF08529 NusA N-terminal domain EP560_00940 PF13184 NusA-like KH domain EP560_00940 PF00575 S1 RNA binding domain EP560_00945 PF08364 Bacterial translation initiation factor IF-2 associated region EP560_00945 PF04760 Translation initiation factor IF-2, N-terminal region EP560_00945 PF11987 Translation-initiation factor 2 EP560_00945 PF00009 Elongation factor Tu GTP binding domain EP560_00950 PF02033 Ribosome-binding factor A EP560_00960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EP560_00970 PF00361 Proton-conducting membrane transporter EP560_00975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP560_00980 PF00361 Proton-conducting membrane transporter EP560_00980 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EP560_00980 PF13244 Domain of unknown function (DUF4040) EP560_00980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP560_00995 PF01502 Phosphoribosyl-AMP cyclohydrolase EP560_01000 PF01494 FAD binding domain EP560_01005 PF03109 ABC1 family EP560_01015 PF01209 ubiE/COQ5 methyltransferase family EP560_01025 PF03976 Polyphosphate kinase 2 (PPK2) EP560_01035 PF17946 RecC C-terminal domain EP560_01040 PF00580 UvrD/REP helicase N-terminal domain EP560_01040 PF13361 UvrD-like helicase C-terminal domain EP560_01040 PF12705 PD-(D/E)XK nuclease superfamily EP560_01045 PF13538 UvrD-like helicase C-terminal domain EP560_01055 PF00312 Ribosomal protein S15 EP560_01060 PF03725 3' exoribonuclease family, domain 2 EP560_01060 PF00013 KH domain EP560_01060 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EP560_01060 PF00575 S1 RNA binding domain EP560_01060 PF01138 3' exoribonuclease family, domain 1 EP560_01065 PF01544 CorA-like Mg2+ transporter protein EP560_01075 PF00226 DnaJ domain EP560_01075 PF01556 DnaJ C terminal domain EP560_01085 PF01430 Hsp33 protein EP560_01090 PF02254 TrkA-N domain EP560_01090 PF00999 Sodium/hydrogen exchanger family EP560_01095 PF18074 Primosomal protein N C-terminal domain EP560_01095 PF17764 3′ DNA-binding domain (3′BD) EP560_01095 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EP560_01095 PF00271 Helicase conserved C-terminal domain EP560_01095 PF00270 DEAD/DEAH box helicase EP560_01100 PF00482 Type II secretion system (T2SS), protein F EP560_01105 PF08334 Type II secretion system (T2SS), protein G EP560_01105 PF07963 Prokaryotic N-terminal methylation motif EP560_01115 PF01588 Putative tRNA binding domain EP560_01120 PF00795 Carbon-nitrogen hydrolase EP560_01125 PF03471 Transporter associated domain EP560_01125 PF00571 CBS domain EP560_01130 PF01206 Sulfurtransferase TusA EP560_01145 PF01177 Asp/Glu/Hydantoin racemase EP560_01155 PF00762 Ferrochelatase EP560_01160 PF00753 Metallo-beta-lactamase superfamily EP560_01165 PF03884 DNA gyrase inhibitor YacG EP560_01185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EP560_01200 PF01197 Ribosomal protein L31 EP560_01205 PF03109 ABC1 family EP560_01210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_01210 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_01215 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_01215 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_01215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_01220 PF01554 MatE EP560_01230 PF06969 HemN C-terminal domain EP560_01230 PF04055 Radical SAM superfamily EP560_01235 PF00106 short chain dehydrogenase EP560_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_01240 PF03466 LysR substrate binding domain EP560_01250 PF00501 AMP-binding enzyme EP560_01250 PF13193 AMP-binding enzyme C-terminal domain EP560_01255 PF12111 Polyribonucleotide phosphorylase C terminal EP560_01255 PF00575 S1 RNA binding domain EP560_01255 PF10150 Ribonuclease E/G family EP560_01265 PF00849 RNA pseudouridylate synthase EP560_01265 PF01479 S4 domain EP560_01270 PF13419 Haloacid dehalogenase-like hydrolase EP560_01275 PF13280 WYL domain EP560_01275 PF08279 HTH domain EP560_01280 PF02798 Glutathione S-transferase, N-terminal domain EP560_01290 PF13737 Transposase DDE domain EP560_01295 PF03466 LysR substrate binding domain EP560_01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_01300 PF12706 Beta-lactamase superfamily domain EP560_01305 PF00141 Peroxidase EP560_01310 PF01590 GAF domain EP560_01310 PF05524 PEP-utilising enzyme, N-terminal EP560_01310 PF00391 PEP-utilising enzyme, mobile domain EP560_01310 PF02896 PEP-utilising enzyme, TIM barrel domain EP560_01315 PF00293 NUDIX domain EP560_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_01335 PF03466 LysR substrate binding domain EP560_01345 PF00330 Aconitase family (aconitate hydratase) EP560_01350 PF00694 Aconitase C-terminal domain EP560_01360 PF00180 Isocitrate/isopropylmalate dehydrogenase EP560_01375 PF01176 Translation initiation factor 1A / IF-1 EP560_01385 PF01416 tRNA pseudouridine synthase EP560_01405 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP560_01405 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP560_01415 PF00375 Sodium:dicarboxylate symporter family EP560_01425 PF03279 Bacterial lipid A biosynthesis acyltransferase EP560_01430 PF01810 LysE type translocator EP560_01445 PF08240 Alcohol dehydrogenase GroES-like domain EP560_01445 PF00107 Zinc-binding dehydrogenase EP560_01450 PF01638 HxlR-like helix-turn-helix EP560_01460 PF08272 Topoisomerase I zinc-ribbon-like EP560_01460 PF01131 DNA topoisomerase EP560_01460 PF01751 Toprim domain EP560_01460 PF01396 Topoisomerase DNA binding C4 zinc finger EP560_01475 PF13361 UvrD-like helicase C-terminal domain EP560_01475 PF00580 UvrD/REP helicase N-terminal domain EP560_01480 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) EP560_01500 PF02254 TrkA-N domain EP560_01500 PF00999 Sodium/hydrogen exchanger family EP560_01505 PF00471 Ribosomal protein L33 EP560_01510 PF00830 Ribosomal L28 family EP560_01515 PF00171 Aldehyde dehydrogenase family EP560_01525 PF01842 ACT domain EP560_01525 PF00551 Formyl transferase EP560_01535 PF01618 MotA/TolQ/ExbB proton channel family EP560_01545 PF01625 Peptide methionine sulfoxide reductase EP560_01555 PF00186 Dihydrofolate reductase EP560_01560 PF00303 Thymidylate synthase EP560_01575 PF01790 Prolipoprotein diacylglyceryl transferase EP560_01595 PF00902 Sec-independent protein translocase protein (TatC) EP560_01600 PF02416 mttA/Hcf106 family EP560_01605 PF02416 mttA/Hcf106 family EP560_01615 PF01725 Ham1 family EP560_01625 PF00561 alpha/beta hydrolase fold EP560_01625 PF07021 Methionine biosynthesis protein MetW EP560_01630 PF00561 alpha/beta hydrolase fold EP560_01635 PF08502 LeuA allosteric (dimerisation) domain EP560_01635 PF00682 HMGL-like EP560_01640 PF13640 2OG-Fe(II) oxygenase superfamily EP560_01640 PF18331 PKHD-type hydroxylase C-terminal domain EP560_01645 PF00593 TonB dependent receptor EP560_01645 PF07715 TonB-dependent Receptor Plug Domain EP560_01650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_01650 PF05697 Bacterial trigger factor protein (TF) EP560_01650 PF05698 Bacterial trigger factor protein (TF) C-terminus EP560_01655 PF00574 Clp protease EP560_01660 PF07724 AAA domain (Cdc48 subfamily) EP560_01660 PF06689 ClpX C4-type zinc finger EP560_01660 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_01675 PF05683 Fumarase C-terminus EP560_01675 PF05681 Fumarate hydratase (Fumerase) EP560_01680 PF07085 DRTGG domain EP560_01680 PF01515 Phosphate acetyl/butaryl transferase EP560_01685 PF00871 Acetokinase family EP560_01690 PF00920 Dehydratase family EP560_01695 PF01081 KDPG and KHG aldolase EP560_01700 PF02447 GntP family permease EP560_01705 PF01202 Shikimate kinase EP560_01710 PF00171 Aldehyde dehydrogenase family EP560_01715 PF00171 Aldehyde dehydrogenase family EP560_01720 PF00561 alpha/beta hydrolase fold EP560_01730 PF00933 Glycosyl hydrolase family 3 N terminal domain EP560_01735 PF00595 PDZ domain EP560_01735 PF03572 Peptidase family S41 EP560_01735 PF17804 Tail specific protease N-terminal domain EP560_01735 PF11818 C-terminal domain of tail specific protease (DUF3340) EP560_01740 PF00534 Glycosyl transferases group 1 EP560_01740 PF13439 Glycosyltransferase Family 4 EP560_01745 PF01569 PAP2 superfamily EP560_01750 PF04384 Iron-sulphur cluster assembly EP560_01755 PF00334 Nucleoside diphosphate kinase EP560_01760 PF04055 Radical SAM superfamily EP560_01770 PF13464 Domain of unknown function (DUF4115) EP560_01775 PF04551 GcpE protein EP560_01780 PF13393 Histidyl-tRNA synthetase EP560_01780 PF03129 Anticodon binding domain EP560_01790 PF13360 PQQ-like domain EP560_01795 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EP560_01795 PF01926 50S ribosome-binding GTPase EP560_01810 PF00550 Phosphopantetheine attachment site EP560_01815 PF00550 Phosphopantetheine attachment site EP560_01825 PF00501 AMP-binding enzyme EP560_01825 PF13193 AMP-binding enzyme C-terminal domain EP560_01840 PF00221 Aromatic amino acid lyase EP560_01860 PF04820 Tryptophan halogenase EP560_01870 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_01870 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_01885 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_01885 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_01900 PF02556 Preprotein translocase subunit SecB EP560_01905 PF00462 Glutaredoxin EP560_01915 PF03193 RsgA GTPase EP560_01920 PF00929 Exonuclease EP560_01935 PF02321 Outer membrane efflux protein EP560_01940 PF12704 MacB-like periplasmic core domain EP560_01940 PF02687 FtsX-like permease family EP560_01940 PF00005 ABC transporter EP560_01945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_01960 PF08264 Anticodon-binding domain of tRNA EP560_01960 PF00133 tRNA synthetases class I (I, L, M and V) EP560_01960 PF09334 tRNA synthetases class I (M) EP560_01960 PF13603 Leucyl-tRNA synthetase, Domain 2 EP560_01970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP560_01970 PF00205 Thiamine pyrophosphate enzyme, central domain EP560_01970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP560_01975 PF10369 Small subunit of acetolactate synthase EP560_01980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EP560_01980 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EP560_01985 PF00563 EAL domain EP560_01985 PF03707 Bacterial signalling protein N terminal repeat EP560_01985 PF00990 Diguanylate cyclase, GGDEF domain EP560_02010 PF16658 Class II release factor RF3, C-terminal domain EP560_02010 PF00009 Elongation factor Tu GTP binding domain EP560_02010 PF03144 Elongation factor Tu domain 2 EP560_02025 PF01026 TatD related DNase EP560_02030 PF00330 Aconitase family (aconitate hydratase) EP560_02030 PF00694 Aconitase C-terminal domain EP560_02040 PF00899 ThiF family EP560_02050 PF03466 LysR substrate binding domain EP560_02050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_02060 PF01207 Dihydrouridine synthase (Dus) EP560_02065 PF07690 Major Facilitator Superfamily EP560_02090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP560_02090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP560_02095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EP560_02100 PF02233 NAD(P) transhydrogenase beta subunit EP560_02105 PF00106 short chain dehydrogenase EP560_02115 PF01261 Xylose isomerase-like TIM barrel EP560_02120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP560_02120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP560_02125 PF00378 Enoyl-CoA hydratase/isomerase EP560_02130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP560_02130 PF00512 His Kinase A (phospho-acceptor) domain EP560_02130 PF00072 Response regulator receiver domain EP560_02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_02130 PF01627 Hpt domain EP560_02130 PF00672 HAMP domain EP560_02135 PF00291 Pyridoxal-phosphate dependent enzyme EP560_02145 PF05958 tRNA (Uracil-5-)-methyltransferase EP560_02150 PF13291 ACT domain EP560_02150 PF04607 Region found in RelA / SpoT proteins EP560_02150 PF02824 TGS domain EP560_02160 PF03819 MazG nucleotide pyrophosphohydrolase domain EP560_02170 PF01743 Poly A polymerase head domain EP560_02170 PF12627 Probable RNA and SrmB- binding site of polymerase A EP560_02170 PF12626 Polymerase A arginine-rich C-terminus EP560_02175 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EP560_02180 PF02548 Ketopantoate hydroxymethyltransferase EP560_02185 PF02569 Pantoate-beta-alanine ligase EP560_02190 PF03668 P-loop ATPase protein family EP560_02195 PF00381 PTS HPr component phosphorylation site EP560_02200 PF04751 Protein of unknown function (DUF615) EP560_02205 PF13193 AMP-binding enzyme C-terminal domain EP560_02205 PF00501 AMP-binding enzyme EP560_02210 PF02824 TGS domain EP560_02210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP560_02210 PF03129 Anticodon binding domain EP560_02210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP560_02215 PF00707 Translation initiation factor IF-3, C-terminal domain EP560_02215 PF05198 Translation initiation factor IF-3, N-terminal domain EP560_02225 PF02798 Glutathione S-transferase, N-terminal domain EP560_02225 PF00043 Glutathione S-transferase, C-terminal domain EP560_02230 PF09335 SNARE associated Golgi protein EP560_02235 PF07690 Major Facilitator Superfamily EP560_02240 PF01632 Ribosomal protein L35 EP560_02245 PF00453 Ribosomal protein L20 EP560_02265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EP560_02265 PF01409 tRNA synthetases class II core domain (F) EP560_02270 PF03484 tRNA synthetase B5 domain EP560_02270 PF03147 Ferredoxin-fold anticodon binding domain EP560_02270 PF03483 B3/4 domain EP560_02270 PF01588 Putative tRNA binding domain EP560_02270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EP560_02275 PF00216 Bacterial DNA-binding protein EP560_02290 PF07497 Rho termination factor, RNA-binding domain EP560_02290 PF07498 Rho termination factor, N-terminal domain EP560_02290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP560_02295 PF00085 Thioredoxin EP560_02300 PF02541 Ppx/GppA phosphatase family EP560_02305 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EP560_02310 PF11734 TilS substrate C-terminal domain EP560_02310 PF01171 PP-loop family EP560_02310 PF09179 TilS substrate binding domain EP560_02315 PF03807 NADP oxidoreductase coenzyme F420-dependent EP560_02315 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP560_02320 PF02325 YGGT family EP560_02325 PF00476 DNA polymerase family A EP560_02325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EP560_02325 PF01612 3'-5' exonuclease EP560_02325 PF01367 5'-3' exonuclease, C-terminal SAM fold EP560_02345 PF00437 Type II/IV secretion system protein EP560_02350 PF02566 OsmC-like protein EP560_02355 PF01047 MarR family EP560_02365 PF00795 Carbon-nitrogen hydrolase EP560_02410 PF00309 Sigma-54 factor, Activator interacting domain (AID) EP560_02410 PF04552 Sigma-54, DNA binding domain EP560_02410 PF04963 Sigma-54 factor, core binding domain EP560_02415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EP560_02420 PF01722 BolA-like protein EP560_02425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP560_02430 PF01634 ATP phosphoribosyltransferase EP560_02435 PF00815 Histidinol dehydrogenase EP560_02440 PF00155 Aminotransferase class I and II EP560_02445 PF04715 Anthranilate synthase component I, N terminal region EP560_02445 PF00425 chorismate binding enzyme EP560_02465 PF13817 IS66 C-terminal element EP560_02465 PF13005 zinc-finger binding domain of transposase IS66 EP560_02465 PF03050 Transposase IS66 family EP560_02465 PF13007 Transposase C of IS166 homeodomain EP560_02500 PF00293 NUDIX domain EP560_02505 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_02510 PF00814 Glycoprotease family EP560_02515 PF04445 Putative SAM-dependent methyltransferase EP560_02525 PF00756 Putative esterase EP560_02535 PF00834 Ribulose-phosphate 3 epimerase family EP560_02550 PF07732 Multicopper oxidase EP560_02550 PF00394 Multicopper oxidase EP560_02550 PF07731 Multicopper oxidase EP560_02555 PF05275 Copper resistance protein B precursor (CopB) EP560_02565 PF00893 Small Multidrug Resistance protein EP560_02570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP560_02570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP560_02575 PF01960 ArgJ family EP560_02580 PF02445 Quinolinate synthetase A protein EP560_02605 PF00962 Adenosine/AMP deaminase EP560_02610 PF08240 Alcohol dehydrogenase GroES-like domain EP560_02610 PF00107 Zinc-binding dehydrogenase EP560_02615 PF03466 LysR substrate binding domain EP560_02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_02620 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_02620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_02620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_02625 PF07690 Major Facilitator Superfamily EP560_02630 PF02515 CoA-transferase family III EP560_02640 PF14537 Cytochrome c3 EP560_02640 PF00890 FAD binding domain EP560_02645 PF03466 LysR substrate binding domain EP560_02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_02655 PF07690 Major Facilitator Superfamily EP560_02665 PF03466 LysR substrate binding domain EP560_02665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_02675 PF01546 Peptidase family M20/M25/M40 EP560_02675 PF07687 Peptidase dimerisation domain EP560_02680 PF12833 Helix-turn-helix domain EP560_02680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP560_02690 PF01810 LysE type translocator EP560_02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_02695 PF03466 LysR substrate binding domain EP560_02705 PF08267 Cobalamin-independent synthase, N-terminal domain EP560_02705 PF01717 Cobalamin-independent synthase, Catalytic domain EP560_02710 PF01613 Flavin reductase like domain EP560_02730 PF13936 Helix-turn-helix domain EP560_02730 PF00665 Integrase core domain EP560_02745 PF02567 Phenazine biosynthesis-like protein EP560_02765 PF13360 PQQ-like domain EP560_02765 PF01011 PQQ enzyme repeat EP560_02835 PF13755 Sensor N-terminal transmembrane domain EP560_02835 PF13756 Stimulus-sensing domain EP560_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_02835 PF00672 HAMP domain EP560_02835 PF00512 His Kinase A (phospho-acceptor) domain EP560_02845 PF00268 Ribonucleotide reductase, small chain EP560_02855 PF02867 Ribonucleotide reductase, barrel domain EP560_02855 PF00317 Ribonucleotide reductase, all-alpha domain EP560_02855 PF03477 ATP cone domain EP560_02865 PF00486 Transcriptional regulatory protein, C terminal EP560_02865 PF00072 Response regulator receiver domain EP560_02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_02870 PF00672 HAMP domain EP560_02870 PF00512 His Kinase A (phospho-acceptor) domain EP560_02880 PF00990 Diguanylate cyclase, GGDEF domain EP560_02880 PF17151 Periplasmic sensor domain EP560_02885 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EP560_02890 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EP560_02895 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EP560_02895 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EP560_02905 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EP560_02905 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EP560_02905 PF10531 SLBB domain EP560_02910 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EP560_02910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP560_02910 PF00384 Molybdopterin oxidoreductase EP560_02915 PF00146 NADH dehydrogenase EP560_02920 PF12838 4Fe-4S dicluster domain EP560_02925 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EP560_02930 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP560_02935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP560_02935 PF00361 Proton-conducting membrane transporter EP560_02940 PF00361 Proton-conducting membrane transporter EP560_02945 PF00361 Proton-conducting membrane transporter EP560_02955 PF00313 'Cold-shock' DNA-binding domain EP560_02960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_02960 PF03466 LysR substrate binding domain EP560_02965 PF00970 Oxidoreductase FAD-binding domain EP560_02965 PF00175 Oxidoreductase NAD-binding domain EP560_02980 PF05552 Conserved TM helix EP560_02995 PF00291 Pyridoxal-phosphate dependent enzyme EP560_03000 PF13533 Biotin-lipoyl like EP560_03025 PF01588 Putative tRNA binding domain EP560_03025 PF09334 tRNA synthetases class I (M) EP560_03035 PF10609 NUBPL iron-transfer P-loop NTPase EP560_03045 PF01048 Phosphorylase superfamily EP560_03060 PF00692 dUTPase EP560_03095 PF01207 Dihydrouridine synthase (Dus) EP560_03105 PF02978 Signal peptide binding domain EP560_03105 PF02881 SRP54-type protein, helical bundle domain EP560_03105 PF00448 SRP54-type protein, GTPase domain EP560_03110 PF03309 Type III pantothenate kinase EP560_03120 PF01925 Sulfite exporter TauE/SafE EP560_03130 PF02463 RecF/RecN/SMC N terminal domain EP560_03130 PF06470 SMC proteins Flexible Hinge Domain EP560_03140 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EP560_03140 PF03120 NAD-dependent DNA ligase OB-fold domain EP560_03140 PF00533 BRCA1 C Terminus (BRCT) domain EP560_03140 PF01653 NAD-dependent DNA ligase adenylation domain EP560_03140 PF12826 Helix-hairpin-helix motif EP560_03145 PF00210 Ferritin-like domain EP560_03150 PF07690 Major Facilitator Superfamily EP560_03155 PF00982 Glycosyltransferase family 20 EP560_03160 PF02358 Trehalose-phosphatase EP560_03165 PF08241 Methyltransferase domain EP560_03165 PF12697 Alpha/beta hydrolase family EP560_03170 PF00202 Aminotransferase class-III EP560_03170 PF04055 Radical SAM superfamily EP560_03170 PF06968 Biotin and Thiamin Synthesis associated domain EP560_03175 PF00155 Aminotransferase class I and II EP560_03190 PF00849 RNA pseudouridylate synthase EP560_03190 PF01479 S4 domain EP560_03195 PF04079 Segregation and condensation complex subunit ScpB EP560_03200 PF02616 Segregation and condensation protein ScpA EP560_03205 PF01300 Telomere recombination EP560_03210 PF04315 Elongation factor P hydroxylase EP560_03215 PF02620 Large ribosomal RNA subunit accumulation protein YceD EP560_03220 PF01783 Ribosomal L32p protein family EP560_03225 PF00698 Acyl transferase domain EP560_03235 PF00550 Phosphopantetheine attachment site EP560_03240 PF04972 BON domain EP560_03240 PF01476 LysM domain EP560_03245 PF03070 TENA/THI-4/PQQC family EP560_03245 PF08543 Phosphomethylpyrimidine kinase EP560_03245 PF02581 Thiamine monophosphate synthase EP560_03255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP560_03270 PF02261 Aspartate decarboxylase EP560_03275 PF01195 Peptidyl-tRNA hydrolase EP560_03280 PF01386 Ribosomal L25p family EP560_03285 PF14572 Phosphoribosyl synthetase-associated domain EP560_03285 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP560_03310 PF00288 GHMP kinases N terminal domain EP560_03310 PF08544 GHMP kinases C terminal EP560_03315 PF03550 Outer membrane lipoprotein LolB EP560_03325 PF01488 Shikimate / quinate 5-dehydrogenase EP560_03325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EP560_03325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EP560_03330 PF10410 DnaB-helicase binding domain of primase EP560_03330 PF08275 DNA primase catalytic core, N-terminal domain EP560_03330 PF08278 DNA primase DnaG DnaB-binding EP560_03330 PF01807 CHC2 zinc finger EP560_03335 PF13525 Outer membrane lipoprotein EP560_03340 PF00849 RNA pseudouridylate synthase EP560_03340 PF01479 S4 domain EP560_03350 PF03358 NADPH-dependent FMN reductase EP560_03355 PF01668 SmpB protein EP560_03360 PF01467 Cytidylyltransferase-like EP560_03365 PF00037 4Fe-4S binding domain EP560_03385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_03385 PF03466 LysR substrate binding domain EP560_03390 PF00180 Isocitrate/isopropylmalate dehydrogenase EP560_03395 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_03400 PF07859 alpha/beta hydrolase fold EP560_03405 PF00355 Rieske [2Fe-2S] domain EP560_03405 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_03410 PF00171 Aldehyde dehydrogenase family EP560_03415 PF00970 Oxidoreductase FAD-binding domain EP560_03415 PF00175 Oxidoreductase NAD-binding domain EP560_03415 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_03430 PF02540 NAD synthase EP560_03430 PF00795 Carbon-nitrogen hydrolase EP560_03440 PF05726 Pirin C-terminal cupin domain EP560_03440 PF02678 Pirin EP560_03450 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_03450 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_03460 PF00164 Ribosomal protein S12/S23 EP560_03465 PF00177 Ribosomal protein S7p/S5e EP560_03470 PF00009 Elongation factor Tu GTP binding domain EP560_03470 PF03144 Elongation factor Tu domain 2 EP560_03470 PF00679 Elongation factor G C-terminus EP560_03470 PF14492 Elongation Factor G, domain II EP560_03470 PF03764 Elongation factor G, domain IV EP560_03475 PF00009 Elongation factor Tu GTP binding domain EP560_03475 PF03144 Elongation factor Tu domain 2 EP560_03475 PF03143 Elongation factor Tu C-terminal domain EP560_03490 PF00583 Acetyltransferase (GNAT) family EP560_03495 PF04377 Arginine-tRNA-protein transferase, C terminus EP560_03495 PF04376 Arginine-tRNA-protein transferase, N terminus EP560_03500 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EP560_03505 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_03510 PF17854 FtsK alpha domain EP560_03510 PF09397 Ftsk gamma domain EP560_03510 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EP560_03510 PF01580 FtsK/SpoIIIE family EP560_03515 PF03050 Transposase IS66 family EP560_03515 PF13817 IS66 C-terminal element EP560_03515 PF13007 Transposase C of IS166 homeodomain EP560_03515 PF13005 zinc-finger binding domain of transposase IS66 EP560_03530 PF01810 LysE type translocator EP560_03545 PF03776 Septum formation topological specificity factor MinE EP560_03550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EP560_03555 PF03775 Septum formation inhibitor MinC, C-terminal domain EP560_03565 PF01553 Acyltransferase EP560_03570 PF13488 Glycine zipper EP560_03570 PF00691 OmpA family EP560_03575 PF00580 UvrD/REP helicase N-terminal domain EP560_03575 PF13361 UvrD-like helicase C-terminal domain EP560_03580 PF00692 dUTPase EP560_03585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP560_03585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP560_03585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP560_03585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP560_03590 PF00696 Amino acid kinase family EP560_03600 PF13230 Glutamine amidotransferases class-II EP560_03605 PF01814 Hemerythrin HHE cation binding domain EP560_03620 PF03658 RnfH family Ubiquitin EP560_03625 PF04355 SmpA / OmlA family EP560_03630 PF01475 Ferric uptake regulator family EP560_03635 PF00437 Type II/IV secretion system protein EP560_03640 PF00437 Type II/IV secretion system protein EP560_03645 PF01168 Alanine racemase, N-terminal domain EP560_03655 PF00149 Calcineurin-like phosphoesterase EP560_03655 PF12320 Type 5 capsule protein repressor C-terminal domain EP560_03675 PF01370 NAD dependent epimerase/dehydratase family EP560_03675 PF08338 Domain of unknown function (DUF1731) EP560_03680 PF01266 FAD dependent oxidoreductase EP560_03685 PF00490 Delta-aminolevulinic acid dehydratase EP560_03690 PF03061 Thioesterase superfamily EP560_03695 PF13533 Biotin-lipoyl like EP560_03700 PF07690 Major Facilitator Superfamily EP560_03755 PF00083 Sugar (and other) transporter EP560_03760 PF00701 Dihydrodipicolinate synthetase family EP560_03770 PF08281 Sigma-70, region 4 EP560_03770 PF04542 Sigma-70 region 2 EP560_03780 PF07715 TonB-dependent Receptor Plug Domain EP560_03780 PF00593 TonB dependent receptor EP560_03830 PF13520 Amino acid permease EP560_03835 PF02574 Homocysteine S-methyltransferase EP560_03845 PF06039 Malate:quinone oxidoreductase (Mqo) EP560_03850 PF05199 GMC oxidoreductase EP560_03850 PF00732 GMC oxidoreductase EP560_03855 PF00171 Aldehyde dehydrogenase family EP560_03860 PF00440 Bacterial regulatory proteins, tetR family EP560_03860 PF13977 BetI-type transcriptional repressor, C-terminal EP560_03865 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_03870 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_03880 PF03061 Thioesterase superfamily EP560_03890 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP560_03890 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP560_03895 PF00375 Sodium:dicarboxylate symporter family EP560_03900 PF07152 YaeQ protein EP560_03905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_03910 PF01522 Polysaccharide deacetylase EP560_03910 PF14883 Hypothetical glycosyl hydrolase family 13 EP560_03915 PF00535 Glycosyl transferase family 2 EP560_03925 PF00378 Enoyl-CoA hydratase/isomerase EP560_03940 PF01614 Bacterial transcriptional regulator EP560_03940 PF09339 IclR helix-turn-helix domain EP560_03945 PF00355 Rieske [2Fe-2S] domain EP560_03955 PF00355 Rieske [2Fe-2S] domain EP560_03965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_03970 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_03970 PF14759 Reductase C-terminal EP560_03975 PF07690 Major Facilitator Superfamily EP560_03985 PF12697 Alpha/beta hydrolase family EP560_03995 PF03447 Homoserine dehydrogenase, NAD binding domain EP560_03995 PF01958 Domain of unknown function DUF108 EP560_04000 PF00171 Aldehyde dehydrogenase family EP560_04005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP560_04005 PF00205 Thiamine pyrophosphate enzyme, central domain EP560_04005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP560_04015 PF07690 Major Facilitator Superfamily EP560_04020 PF01327 Polypeptide deformylase EP560_04025 PF04960 Glutaminase EP560_04030 PF12833 Helix-turn-helix domain EP560_04030 PF02311 AraC-like ligand binding domain EP560_04035 PF07690 Major Facilitator Superfamily EP560_04040 PF01263 Aldose 1-epimerase EP560_04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_04055 PF03466 LysR substrate binding domain EP560_04065 PF07690 Major Facilitator Superfamily EP560_04070 PF00456 Transketolase, thiamine diphosphate binding domain EP560_04075 PF02780 Transketolase, C-terminal domain EP560_04075 PF02779 Transketolase, pyrimidine binding domain EP560_04080 PF02310 B12 binding domain EP560_04080 PF00809 Pterin binding enzyme EP560_04080 PF02965 Vitamin B12 dependent methionine synthase, activation domain EP560_04080 PF02574 Homocysteine S-methyltransferase EP560_04080 PF02607 B12 binding domain EP560_04085 PF01384 Phosphate transporter family EP560_04090 PF00291 Pyridoxal-phosphate dependent enzyme EP560_04105 PF03781 Sulfatase-modifying factor enzyme 1 EP560_04110 PF00884 Sulfatase EP560_04120 PF01106 NifU-like domain EP560_04120 PF01521 Iron-sulphur cluster biosynthesis EP560_04125 PF00593 TonB dependent receptor EP560_04125 PF07715 TonB-dependent Receptor Plug Domain EP560_04140 PF00484 Carbonic anhydrase EP560_04145 PF13472 GDSL-like Lipase/Acylhydrolase family EP560_04150 PF00005 ABC transporter EP560_04160 PF01694 Rhomboid family EP560_04165 PF00912 Transglycosylase EP560_04170 PF13090 Polyphosphate kinase C-terminal domain 2 EP560_04170 PF13089 Polyphosphate kinase N-terminal domain EP560_04170 PF17941 Polyphosphate kinase C-terminal domain 1 EP560_04170 PF02503 Polyphosphate kinase middle domain EP560_04185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_04185 PF03466 LysR substrate binding domain EP560_04190 PF00561 alpha/beta hydrolase fold EP560_04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_04195 PF18113 Rubredoxin binding C-terminal domain EP560_04200 PF00301 Rubredoxin EP560_04215 PF01336 OB-fold nucleic acid binding domain EP560_04215 PF00152 tRNA synthetases class II (D, K and N) EP560_04220 PF14052 Capsule assembly protein Wzi EP560_04230 PF01507 Phosphoadenosine phosphosulfate reductase family EP560_04235 PF00009 Elongation factor Tu GTP binding domain EP560_04250 PF03600 Citrate transporter EP560_04260 PF00571 CBS domain EP560_04260 PF03471 Transporter associated domain EP560_04260 PF01595 Cyclin M transmembrane N-terminal domain EP560_04265 PF03466 LysR substrate binding domain EP560_04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_04270 PF00463 Isocitrate lyase family EP560_04285 PF01774 UreD urease accessory protein EP560_04290 PF00547 Urease, gamma subunit EP560_04295 PF00699 Urease beta subunit EP560_04305 PF05194 UreE urease accessory protein, C-terminal domain EP560_04305 PF02814 UreE urease accessory protein, N-terminal domain EP560_04310 PF01730 UreF EP560_04315 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP560_04330 PF00905 Penicillin binding protein transpeptidase domain EP560_04330 PF03717 Penicillin-binding Protein dimerisation domain EP560_04345 PF05191 Adenylate kinase, active site lid EP560_04355 PF00633 Helix-hairpin-helix motif EP560_04355 PF00730 HhH-GPD superfamily base excision DNA repair protein EP560_04355 PF10576 Iron-sulfur binding domain of endonuclease III EP560_04360 PF04060 Putative Fe-S cluster EP560_04365 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP560_04365 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP560_04375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP560_04380 PF02590 Predicted SPOUT methyltransferase EP560_04385 PF05362 Lon protease (S16) C-terminal proteolytic domain EP560_04385 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP560_04385 PF00004 ATPase family associated with various cellular activities (AAA) EP560_04390 PF05658 Head domain of trimeric autotransporter adhesin EP560_04390 PF03895 YadA-like membrane anchor domain EP560_04390 PF13018 Extended Signal Peptide of Type V secretion system EP560_04390 PF05662 Coiled stalk of trimeric autotransporter adhesin EP560_04400 PF01812 5-formyltetrahydrofolate cyclo-ligase family EP560_04565 PF13737 Transposase DDE domain EP560_04785 PF13356 Arm DNA-binding domain EP560_04785 PF00589 Phage integrase family EP560_04795 PF00854 POT family EP560_04805 PF04345 Chorismate lyase EP560_04810 PF01040 UbiA prenyltransferase family EP560_04845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EP560_04845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EP560_04850 PF01784 NIF3 (NGG1p interacting factor 3) EP560_04855 PF13180 PDZ domain EP560_04860 PF12627 Probable RNA and SrmB- binding site of polymerase A EP560_04860 PF01743 Poly A polymerase head domain EP560_04865 PF03949 Malic enzyme, NAD binding domain EP560_04865 PF00390 Malic enzyme, N-terminal domain EP560_04865 PF01515 Phosphate acetyl/butaryl transferase EP560_04870 PF03707 Bacterial signalling protein N terminal repeat EP560_04870 PF00990 Diguanylate cyclase, GGDEF domain EP560_04870 PF00563 EAL domain EP560_04875 PF13737 Transposase DDE domain EP560_04880 PF04452 RNA methyltransferase EP560_04885 PF02219 Methylenetetrahydrofolate reductase EP560_04890 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP560_04890 PF05221 S-adenosyl-L-homocysteine hydrolase EP560_04905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_04905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_04905 PF09317 Domain of unknown function (DUF1974) EP560_04910 PF04055 Radical SAM superfamily EP560_04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_04915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_04925 PF07690 Major Facilitator Superfamily EP560_04935 PF00557 Metallopeptidase family M24 EP560_04940 PF00318 Ribosomal protein S2 EP560_04945 PF00889 Elongation factor TS EP560_04955 PF12833 Helix-turn-helix domain EP560_04975 PF05036 Sporulation related domain EP560_04975 PF03330 Lytic transglycolase EP560_04980 PF13406 Transglycosylase SLT domain EP560_04985 PF01098 Cell cycle protein EP560_04995 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EP560_04995 PF14489 QueF-like protein EP560_05000 PF01061 ABC-2 type transporter EP560_05005 PF00005 ABC transporter EP560_05035 PF00464 Serine hydroxymethyltransferase EP560_05040 PF02321 Outer membrane efflux protein EP560_05045 PF00873 AcrB/AcrD/AcrF family EP560_05050 PF13533 Biotin-lipoyl like EP560_05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_05055 PF03466 LysR substrate binding domain EP560_05060 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_05065 PF00528 Binding-protein-dependent transport system inner membrane component EP560_05070 PF00528 Binding-protein-dependent transport system inner membrane component EP560_05075 PF00005 ABC transporter EP560_05080 PF00893 Small Multidrug Resistance protein EP560_05085 PF00037 4Fe-4S binding domain EP560_05095 PF00392 Bacterial regulatory proteins, gntR family EP560_05095 PF00155 Aminotransferase class I and II EP560_05100 PF02567 Phenazine biosynthesis-like protein EP560_05105 PF00175 Oxidoreductase NAD-binding domain EP560_05105 PF00970 Oxidoreductase FAD-binding domain EP560_05110 PF01980 tRNA-methyltransferase O EP560_05110 PF18389 TrmO C-terminal domain EP560_05120 PF00437 Type II/IV secretion system protein EP560_05130 PF00486 Transcriptional regulatory protein, C terminal EP560_05130 PF00072 Response regulator receiver domain EP560_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_05135 PF00512 His Kinase A (phospho-acceptor) domain EP560_05135 PF08521 Two-component sensor kinase N-terminal EP560_05145 PF00293 NUDIX domain EP560_05155 PF00912 Transglycosylase EP560_05155 PF14814 Bifunctional transglycosylase second domain EP560_05155 PF00905 Penicillin binding protein transpeptidase domain EP560_05160 PF01513 ATP-NAD kinase EP560_05165 PF07023 Protein of unknown function (DUF1315) EP560_05170 PF00591 Glycosyl transferase family, a/b domain EP560_05170 PF02885 Glycosyl transferase family, helical bundle domain EP560_05180 PF00375 Sodium:dicarboxylate symporter family EP560_05185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_05185 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_05185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_05190 PF00756 Putative esterase EP560_05195 PF01817 Chorismate mutase type II EP560_05195 PF01842 ACT domain EP560_05195 PF00800 Prephenate dehydratase EP560_05200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP560_05210 PF07687 Peptidase dimerisation domain EP560_05210 PF01546 Peptidase family M20/M25/M40 EP560_05215 PF12706 Beta-lactamase superfamily domain EP560_05225 PF03883 Peroxide stress protein YaaA EP560_05235 PF05690 Thiazole biosynthesis protein ThiG EP560_05245 PF04241 Protein of unknown function (DUF423) EP560_05250 PF04545 Sigma-70, region 4 EP560_05250 PF04542 Sigma-70 region 2 EP560_05250 PF00140 Sigma-70 factor, region 1.2 EP560_05260 PF00313 'Cold-shock' DNA-binding domain EP560_05265 PF00270 DEAD/DEAH box helicase EP560_05265 PF00271 Helicase conserved C-terminal domain EP560_05275 PF00881 Nitroreductase family EP560_05280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EP560_05280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EP560_05300 PF01180 Dihydroorotate dehydrogenase EP560_05305 PF02674 Colicin V production protein EP560_05310 PF00156 Phosphoribosyl transferase domain EP560_05325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_05325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_05330 PF01435 Peptidase family M48 EP560_05335 PF09424 Yqey-like protein EP560_05340 PF01165 Ribosomal protein S21 EP560_05345 PF00814 Glycoprotease family EP560_05365 PF00069 Protein kinase domain EP560_05390 PF03466 LysR substrate binding domain EP560_05390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_05395 PF00202 Aminotransferase class-III EP560_05400 PF00171 Aldehyde dehydrogenase family EP560_05405 PF00324 Amino acid permease EP560_05435 PF04076 Bacterial OB fold (BOF) protein EP560_05460 PF00561 alpha/beta hydrolase fold EP560_05465 PF03616 Sodium/glutamate symporter EP560_05475 PF07729 FCD domain EP560_05475 PF00392 Bacterial regulatory proteins, gntR family EP560_05525 PF08946 Osmosensory transporter coiled coil EP560_05525 PF00083 Sugar (and other) transporter EP560_05550 PF00155 Aminotransferase class I and II EP560_05555 PF02080 TrkA-C domain EP560_05555 PF06826 Predicted Permease Membrane Region EP560_05565 PF04403 Paraquat-inducible protein A EP560_05570 PF02470 MlaD protein EP560_05580 PF01177 Asp/Glu/Hydantoin racemase EP560_05585 PF00892 EamA-like transporter family EP560_05590 PF07995 Glucose / Sorbosone dehydrogenase EP560_05610 PF00375 Sodium:dicarboxylate symporter family EP560_05620 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP560_05620 PF00753 Metallo-beta-lactamase superfamily EP560_05625 PF00528 Binding-protein-dependent transport system inner membrane component EP560_05630 PF00005 ABC transporter EP560_05630 PF09383 NIL domain EP560_05635 PF03180 NLPA lipoprotein EP560_05640 PF02844 Phosphoribosylglycinamide synthetase, N domain EP560_05640 PF02843 Phosphoribosylglycinamide synthetase, C domain EP560_05640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EP560_05645 PF01808 AICARFT/IMPCHase bienzyme EP560_05645 PF02142 MGS-like domain EP560_05650 PF02954 Bacterial regulatory protein, Fis family EP560_05670 PF01134 Glucose inhibited division protein A EP560_05670 PF13932 GidA associated domain EP560_05680 PF14403 Circularly permuted ATP-grasp type 2 EP560_05690 PF01841 Transglutaminase-like superfamily EP560_05690 PF08379 Bacterial transglutaminase-like N-terminal region EP560_05700 PF01168 Alanine racemase, N-terminal domain EP560_05700 PF00842 Alanine racemase, C-terminal domain EP560_05705 PF03796 DnaB-like helicase C terminal domain EP560_05705 PF00772 DnaB-like helicase N terminal domain EP560_05710 PF01281 Ribosomal protein L9, N-terminal domain EP560_05710 PF03948 Ribosomal protein L9, C-terminal domain EP560_05715 PF01084 Ribosomal protein S18 EP560_05720 PF01250 Ribosomal protein S6 EP560_05725 PF01040 UbiA prenyltransferase family EP560_05730 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EP560_05735 PF00510 Cytochrome c oxidase subunit III EP560_05740 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP560_05745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EP560_05745 PF06481 COX Aromatic Rich Motif EP560_05755 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EP560_05755 PF00391 PEP-utilising enzyme, mobile domain EP560_05755 PF02896 PEP-utilising enzyme, TIM barrel domain EP560_05760 PF03618 Kinase/pyrophosphorylase EP560_05770 PF01522 Polysaccharide deacetylase EP560_05770 PF14883 Hypothetical glycosyl hydrolase family 13 EP560_05775 PF00535 Glycosyl transferase family 2 EP560_05780 PF13994 PgaD-like protein EP560_05790 PF00296 Luciferase-like monooxygenase EP560_05810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_05810 PF03466 LysR substrate binding domain EP560_05820 PF00472 RF-1 domain EP560_05820 PF03462 PCRF domain EP560_05825 PF17827 PrmC N-terminal domain EP560_05825 PF13847 Methyltransferase domain EP560_05830 PF00528 Binding-protein-dependent transport system inner membrane component EP560_05835 PF09084 NMT1/THI5 like EP560_05840 PF12833 Helix-turn-helix domain EP560_05845 PF00106 short chain dehydrogenase EP560_05850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_05850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_05850 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_05855 PF00501 AMP-binding enzyme EP560_05855 PF13193 AMP-binding enzyme C-terminal domain EP560_05860 PF01613 Flavin reductase like domain EP560_05865 PF00899 ThiF family EP560_05870 PF03109 ABC1 family EP560_05885 PF03814 Potassium-transporting ATPase A subunit EP560_05895 PF02669 K+-transporting ATPase, c chain EP560_05905 PF00486 Transcriptional regulatory protein, C terminal EP560_05905 PF00072 Response regulator receiver domain EP560_05910 PF00120 Glutamine synthetase, catalytic domain EP560_05920 PF03232 Ubiquinone biosynthesis protein COQ7 EP560_05925 PF07690 Major Facilitator Superfamily EP560_05930 PF01103 Surface antigen EP560_05930 PF07244 Surface antigen variable number repeat EP560_05930 PF17243 POTRA domain TamA domain 1 EP560_05950 PF11791 Aconitate B N-terminal domain EP560_05950 PF00330 Aconitase family (aconitate hydratase) EP560_05950 PF06434 Aconitate hydratase 2 N-terminus EP560_05960 PF00520 Ion transport protein EP560_05960 PF00027 Cyclic nucleotide-binding domain EP560_05965 PF07690 Major Facilitator Superfamily EP560_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_05980 PF03466 LysR substrate binding domain EP560_05985 PF04284 Protein of unknown function (DUF441) EP560_05995 PF01479 S4 domain EP560_05995 PF00849 RNA pseudouridylate synthase EP560_06010 PF01479 S4 domain EP560_06010 PF00849 RNA pseudouridylate synthase EP560_06015 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EP560_06020 PF08676 MutL C terminal dimerisation domain EP560_06020 PF01119 DNA mismatch repair protein, C-terminal domain EP560_06030 PF17209 Hfq protein EP560_06040 PF00881 Nitroreductase family EP560_06050 PF00149 Calcineurin-like phosphoesterase EP560_06055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP560_06060 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EP560_06060 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP560_06075 PF00117 Glutamine amidotransferase class-I EP560_06075 PF00958 GMP synthase C terminal domain EP560_06075 PF02540 NAD synthase EP560_06080 PF05985 Ethanolamine ammonia-lyase light chain (EutC) EP560_06085 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EP560_06090 PF13520 Amino acid permease EP560_06095 PF00171 Aldehyde dehydrogenase family EP560_06110 PF00465 Iron-containing alcohol dehydrogenase EP560_06115 PF14493 Helix-turn-helix domain EP560_06115 PF05970 PIF1-like helicase EP560_06125 PF06445 GyrI-like small molecule binding domain EP560_06130 PF02110 Hydroxyethylthiazole kinase family EP560_06145 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EP560_06145 PF01433 Peptidase family M1 domain EP560_06145 PF11940 Domain of unknown function (DUF3458) Ig-like fold EP560_06155 PF00106 short chain dehydrogenase EP560_06165 PF01817 Chorismate mutase type II EP560_06170 PF01037 Lrp/AsnC ligand binding domain EP560_06185 PF00440 Bacterial regulatory proteins, tetR family EP560_06190 PF00593 TonB dependent receptor EP560_06190 PF07715 TonB-dependent Receptor Plug Domain EP560_06195 PF00924 Mechanosensitive ion channel EP560_06230 PF07715 TonB-dependent Receptor Plug Domain EP560_06230 PF00593 TonB dependent receptor EP560_06250 PF12848 ABC transporter EP560_06250 PF00005 ABC transporter EP560_06255 PF00582 Universal stress protein family EP560_06270 PF00689 Cation transporting ATPase, C-terminus EP560_06270 PF00690 Cation transporter/ATPase, N-terminus EP560_06275 PF02308 MgtC family EP560_06280 PF03594 Benzoate membrane transport protein EP560_06285 PF01037 Lrp/AsnC ligand binding domain EP560_06290 PF01810 LysE type translocator EP560_06300 PF03466 LysR substrate binding domain EP560_06300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_06310 PF02803 Thiolase, C-terminal domain EP560_06310 PF00108 Thiolase, N-terminal domain EP560_06335 PF07690 Major Facilitator Superfamily EP560_06340 PF12170 DNA polymerase III tau subunit V interacting with alpha EP560_06340 PF12169 DNA polymerase III subunits gamma and tau domain III EP560_06340 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EP560_06345 PF05506 Domain of unknown function (DUF756) EP560_06345 PF04185 Phosphoesterase family EP560_06350 PF03061 Thioesterase superfamily EP560_06355 PF00465 Iron-containing alcohol dehydrogenase EP560_06365 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP560_06370 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EP560_06370 PF01565 FAD binding domain EP560_06385 PF01645 Conserved region in glutamate synthase EP560_06470 PF00145 C-5 cytosine-specific DNA methylase EP560_06520 PF13936 Helix-turn-helix domain EP560_06520 PF00665 Integrase core domain EP560_06580 PF03050 Transposase IS66 family EP560_06580 PF13817 IS66 C-terminal element EP560_06580 PF13007 Transposase C of IS166 homeodomain EP560_06580 PF13005 zinc-finger binding domain of transposase IS66 EP560_06660 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP560_06670 PF13737 Transposase DDE domain EP560_06675 PF00884 Sulfatase EP560_06675 PF08019 Phosphoethanolamine transferase EptA/EptB EP560_06685 PF12832 MFS_1 like family EP560_06695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_06695 PF00289 Biotin carboxylase, N-terminal domain EP560_06695 PF02785 Biotin carboxylase C-terminal domain EP560_06700 PF00364 Biotin-requiring enzyme EP560_06705 PF01220 Dehydroquinase class II EP560_06710 PF13438 Domain of unknown function (DUF4113) EP560_06710 PF00817 impB/mucB/samB family EP560_06710 PF11799 impB/mucB/samB family C-terminal domain EP560_06720 PF00005 ABC transporter EP560_06725 PF00072 Response regulator receiver domain EP560_06725 PF00486 Transcriptional regulatory protein, C terminal EP560_06735 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP560_06735 PF13806 Rieske-like [2Fe-2S] domain EP560_06735 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_06735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP560_06735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP560_06735 PF04324 BFD-like [2Fe-2S] binding domain EP560_06740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP560_06740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP560_06740 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_06740 PF04324 BFD-like [2Fe-2S] binding domain EP560_06740 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP560_06745 PF01568 Molydopterin dinucleotide binding domain EP560_06745 PF00384 Molybdopterin oxidoreductase EP560_06745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP560_06745 PF04324 BFD-like [2Fe-2S] binding domain EP560_06750 PF12804 MobA-like NTP transferase domain EP560_06755 PF01568 Molydopterin dinucleotide binding domain EP560_06755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP560_06755 PF00384 Molybdopterin oxidoreductase EP560_06760 PF04055 Radical SAM superfamily EP560_06760 PF06463 Molybdenum Cofactor Synthesis C EP560_06770 PF02391 MoaE protein EP560_06775 PF00994 Probable molybdopterin binding domain EP560_06775 PF01967 MoaC family EP560_06780 PF03453 MoeA N-terminal region (domain I and II) EP560_06780 PF00994 Probable molybdopterin binding domain EP560_06780 PF03454 MoeA C-terminal region (domain IV) EP560_06785 PF01638 HxlR-like helix-turn-helix EP560_06790 PF00392 Bacterial regulatory proteins, gntR family EP560_06790 PF00155 Aminotransferase class I and II EP560_06795 PF00892 EamA-like transporter family EP560_06815 PF02635 DsrE/DsrF-like family EP560_06820 PF16363 GDP-mannose 4,6 dehydratase EP560_06825 PF00206 Lyase EP560_06825 PF10415 Fumarase C C-terminus EP560_06850 PF01266 FAD dependent oxidoreductase EP560_06860 PF02542 YgbB family EP560_06870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP560_06870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP560_06875 PF00440 Bacterial regulatory proteins, tetR family EP560_06880 PF02954 Bacterial regulatory protein, Fis family EP560_06880 PF00072 Response regulator receiver domain EP560_06880 PF00158 Sigma-54 interaction domain EP560_06885 PF00989 PAS fold EP560_06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_06885 PF00512 His Kinase A (phospho-acceptor) domain EP560_06895 PF04055 Radical SAM superfamily EP560_06895 PF00919 Uncharacterized protein family UPF0004 EP560_06895 PF18693 TRAM domain EP560_06900 PF00696 Amino acid kinase family EP560_06905 PF01765 Ribosome recycling factor EP560_06910 PF01255 Putative undecaprenyl diphosphate synthase EP560_06920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EP560_06920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EP560_06920 PF13288 DXP reductoisomerase C-terminal domain EP560_06925 PF13180 PDZ domain EP560_06925 PF17820 PDZ domain EP560_06925 PF02163 Peptidase family M50 EP560_06930 PF07244 Surface antigen variable number repeat EP560_06930 PF01103 Surface antigen EP560_06940 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EP560_06940 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_06945 PF07977 FabA-like domain EP560_06950 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_06950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EP560_06965 PF02631 RecX family EP560_06970 PF00154 recA bacterial DNA recombination protein EP560_06975 PF01479 S4 domain EP560_06980 PF13419 Haloacid dehalogenase-like hydrolase EP560_07005 PF01037 Lrp/AsnC ligand binding domain EP560_07010 PF00266 Aminotransferase class-V EP560_07015 PF00324 Amino acid permease EP560_07025 PF00082 Subtilase family EP560_07025 PF05922 Peptidase inhibitor I9 EP560_07030 PF00916 Sulfate permease family EP560_07030 PF01740 STAS domain EP560_07035 PF02586 SOS response associated peptidase (SRAP) EP560_07040 PF07995 Glucose / Sorbosone dehydrogenase EP560_07050 PF00990 Diguanylate cyclase, GGDEF domain EP560_07050 PF03707 Bacterial signalling protein N terminal repeat EP560_07050 PF00563 EAL domain EP560_07070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EP560_07070 PF02378 Phosphotransferase system, EIIC EP560_07075 PF00294 pfkB family carbohydrate kinase EP560_07080 PF00391 PEP-utilising enzyme, mobile domain EP560_07080 PF02896 PEP-utilising enzyme, TIM barrel domain EP560_07080 PF05524 PEP-utilising enzyme, N-terminal EP560_07080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EP560_07080 PF00381 PTS HPr component phosphorylation site EP560_07105 PF05525 Branched-chain amino acid transport protein EP560_07110 PF00557 Metallopeptidase family M24 EP560_07115 PF03466 LysR substrate binding domain EP560_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_07125 PF00462 Glutaredoxin EP560_07130 PF00202 Aminotransferase class-III EP560_07135 PF00571 CBS domain EP560_07135 PF00478 IMP dehydrogenase / GMP reductase domain EP560_07160 PF02881 SRP54-type protein, helical bundle domain EP560_07160 PF00448 SRP54-type protein, GTPase domain EP560_07170 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EP560_07185 PF08173 Membrane bound YbgT-like protein EP560_07190 PF02322 Cytochrome bd terminal oxidase subunit II EP560_07195 PF01654 Cytochrome bd terminal oxidase subunit I EP560_07205 PF13737 Transposase DDE domain EP560_07210 PF00665 Integrase core domain EP560_07210 PF13936 Helix-turn-helix domain EP560_07215 PF07290 Protein of unknown function (DUF1449) EP560_07225 PF00294 pfkB family carbohydrate kinase EP560_07230 PF00593 TonB dependent receptor EP560_07230 PF07715 TonB-dependent Receptor Plug Domain EP560_07235 PF08367 Peptidase M16C associated EP560_07235 PF00675 Insulinase (Peptidase family M16) EP560_07235 PF05193 Peptidase M16 inactive domain EP560_07240 PF02253 Phospholipase A1 EP560_07245 PF02386 Cation transport protein EP560_07250 PF02080 TrkA-C domain EP560_07250 PF02254 TrkA-N domain EP560_07255 PF00585 C-terminal regulatory domain of Threonine dehydratase EP560_07255 PF00291 Pyridoxal-phosphate dependent enzyme EP560_07260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EP560_07275 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP560_07275 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP560_07285 PF02617 ATP-dependent Clp protease adaptor protein ClpS EP560_07290 PF02861 Clp amino terminal domain, pathogenicity island component EP560_07290 PF17871 AAA lid domain EP560_07290 PF07724 AAA domain (Cdc48 subfamily) EP560_07290 PF00004 ATPase family associated with various cellular activities (AAA) EP560_07290 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_07295 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EP560_07300 PF00793 DAHP synthetase I family EP560_07315 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_07315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_07345 PF00117 Glutamine amidotransferase class-I EP560_07345 PF06418 CTP synthase N-terminus EP560_07350 PF00793 DAHP synthetase I family EP560_07355 PF00113 Enolase, C-terminal TIM barrel domain EP560_07355 PF03952 Enolase, N-terminal domain EP560_07360 PF04239 Protein of unknown function (DUF421) EP560_07365 PF04977 Septum formation initiator EP560_07370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EP560_07375 PF01144 Coenzyme A transferase EP560_07380 PF01144 Coenzyme A transferase EP560_07385 PF02803 Thiolase, C-terminal domain EP560_07385 PF00108 Thiolase, N-terminal domain EP560_07390 PF10397 Adenylosuccinate lyase C-terminus EP560_07390 PF00206 Lyase EP560_07395 PF00561 alpha/beta hydrolase fold EP560_07400 PF07690 Major Facilitator Superfamily EP560_07405 PF02627 Carboxymuconolactone decarboxylase family EP560_07410 PF00775 Dioxygenase EP560_07410 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal EP560_07415 PF00775 Dioxygenase EP560_07420 PF01487 Type I 3-dehydroquinase EP560_07425 PF05048 Periplasmic copper-binding protein (NosD) EP560_07430 PF04966 Carbohydrate-selective porin, OprB family EP560_07435 PF01011 PQQ enzyme repeat EP560_07435 PF13360 PQQ-like domain EP560_07445 PF04143 Sulphur transport EP560_07455 PF00753 Metallo-beta-lactamase superfamily EP560_07460 PF09339 IclR helix-turn-helix domain EP560_07460 PF01614 Bacterial transcriptional regulator EP560_07465 PF03466 LysR substrate binding domain EP560_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_07470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_07470 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_07470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_07485 PF00106 short chain dehydrogenase EP560_07495 PF07690 Major Facilitator Superfamily EP560_07505 PF01425 Amidase EP560_07510 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_07525 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_07525 PF00355 Rieske [2Fe-2S] domain EP560_07540 PF00175 Oxidoreductase NAD-binding domain EP560_07540 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_07545 PF01613 Flavin reductase like domain EP560_07550 PF02311 AraC-like ligand binding domain EP560_07550 PF12833 Helix-turn-helix domain EP560_07555 PF02728 Copper amine oxidase, N3 domain EP560_07555 PF02727 Copper amine oxidase, N2 domain EP560_07555 PF01179 Copper amine oxidase, enzyme domain EP560_07555 PF07833 Copper amine oxidase N-terminal domain EP560_07565 PF00171 Aldehyde dehydrogenase family EP560_07570 PF01804 Penicillin amidase EP560_07575 PF12146 Serine aminopeptidase, S33 EP560_07580 PF00108 Thiolase, N-terminal domain EP560_07580 PF02803 Thiolase, C-terminal domain EP560_07585 PF01144 Coenzyme A transferase EP560_07590 PF01144 Coenzyme A transferase EP560_07595 PF00775 Dioxygenase EP560_07595 PF04444 Catechol dioxygenase N terminus EP560_07600 PF02426 Muconolactone delta-isomerase EP560_07605 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP560_07605 PF13378 Enolase C-terminal domain-like EP560_07610 PF03466 LysR substrate binding domain EP560_07610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_07620 PF07729 FCD domain EP560_07620 PF00392 Bacterial regulatory proteins, gntR family EP560_07625 PF00920 Dehydratase family EP560_07630 PF07690 Major Facilitator Superfamily EP560_07640 PF00171 Aldehyde dehydrogenase family EP560_07660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_07660 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_07660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_07670 PF06506 Propionate catabolism activator EP560_07670 PF00158 Sigma-54 interaction domain EP560_07670 PF02954 Bacterial regulatory protein, Fis family EP560_07675 PF13193 AMP-binding enzyme C-terminal domain EP560_07675 PF00501 AMP-binding enzyme EP560_07680 PF04341 Protein of unknown function, DUF485 EP560_07685 PF00474 Sodium:solute symporter family EP560_07690 PF00107 Zinc-binding dehydrogenase EP560_07690 PF08240 Alcohol dehydrogenase GroES-like domain EP560_07695 PF00171 Aldehyde dehydrogenase family EP560_07705 PF00561 alpha/beta hydrolase fold EP560_07710 PF00199 Catalase EP560_07710 PF06628 Catalase-related immune-responsive EP560_07730 PF07859 alpha/beta hydrolase fold EP560_07735 PF01047 MarR family EP560_07740 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_07740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_07745 PF00106 short chain dehydrogenase EP560_07750 PF01872 RibD C-terminal domain EP560_07755 PF00376 MerR family regulatory protein EP560_07755 PF09278 MerR, DNA binding EP560_07765 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_07775 PF12706 Beta-lactamase superfamily domain EP560_07780 PF08359 YsiA-like protein, C-terminal region EP560_07780 PF00440 Bacterial regulatory proteins, tetR family EP560_07790 PF13737 Transposase DDE domain EP560_07800 PF00857 Isochorismatase family EP560_07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_07805 PF03466 LysR substrate binding domain EP560_07810 PF07995 Glucose / Sorbosone dehydrogenase EP560_07815 PF02254 TrkA-N domain EP560_07815 PF00999 Sodium/hydrogen exchanger family EP560_07825 PF01546 Peptidase family M20/M25/M40 EP560_07825 PF07687 Peptidase dimerisation domain EP560_07840 PF08479 POTRA domain, ShlB-type EP560_07840 PF17287 POTRA domain EP560_07840 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EP560_07845 PF04829 Pre-toxin domain with VENN motif EP560_07845 PF05860 haemagglutination activity domain EP560_07845 PF13018 Extended Signal Peptide of Type V secretion system EP560_07845 PF13332 Hemagglutinin repeat EP560_07860 PF07690 Major Facilitator Superfamily EP560_07865 PF04909 Amidohydrolase EP560_07880 PF08450 SMP-30/Gluconolactonase/LRE-like region EP560_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_07890 PF03466 LysR substrate binding domain EP560_07910 PF07690 Major Facilitator Superfamily EP560_07915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_07915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_07915 PF01842 ACT domain EP560_07920 PF03737 Aldolase/RraA EP560_07940 PF00529 HlyD membrane-fusion protein of T1SS EP560_07940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_07955 PF00171 Aldehyde dehydrogenase family EP560_07960 PF00920 Dehydratase family EP560_07970 PF03466 LysR substrate binding domain EP560_07970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_07975 PF01370 NAD dependent epimerase/dehydratase family EP560_07980 PF07690 Major Facilitator Superfamily EP560_07985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP560_07985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP560_07990 PF06719 AraC-type transcriptional regulator N-terminus EP560_07990 PF12833 Helix-turn-helix domain EP560_08005 PF08240 Alcohol dehydrogenase GroES-like domain EP560_08005 PF00107 Zinc-binding dehydrogenase EP560_08020 PF00005 ABC transporter EP560_08040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP560_08040 PF14572 Phosphoribosyl synthetase-associated domain EP560_08045 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP560_08120 PF00196 Bacterial regulatory proteins, luxR family EP560_08125 PF01425 Amidase EP560_08130 PF13533 Biotin-lipoyl like EP560_08135 PF07690 Major Facilitator Superfamily EP560_08160 PF01975 Survival protein SurE EP560_08170 PF13291 ACT domain EP560_08170 PF02824 TGS domain EP560_08170 PF04607 Region found in RelA / SpoT proteins EP560_08225 PF12146 Serine aminopeptidase, S33 EP560_08230 PF02311 AraC-like ligand binding domain EP560_08230 PF12833 Helix-turn-helix domain EP560_08245 PF00072 Response regulator receiver domain EP560_08245 PF00486 Transcriptional regulatory protein, C terminal EP560_08250 PF00529 HlyD membrane-fusion protein of T1SS EP560_08250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_08255 PF00873 AcrB/AcrD/AcrF family EP560_08260 PF02321 Outer membrane efflux protein EP560_08265 PF12146 Serine aminopeptidase, S33 EP560_08270 PF00743 Flavin-binding monooxygenase-like EP560_08275 PF01593 Flavin containing amine oxidoreductase EP560_08290 PF01266 FAD dependent oxidoreductase EP560_08310 PF16970 Type-1 fimbrial protein, A EP560_08315 PF02753 Pili assembly chaperone PapD, C-terminal domain EP560_08315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP560_08320 PF13954 PapC N-terminal domain EP560_08320 PF00577 Outer membrane usher protein EP560_08320 PF13953 PapC C-terminal domain EP560_08325 PF00419 Fimbrial protein EP560_08335 PF08240 Alcohol dehydrogenase GroES-like domain EP560_08335 PF00107 Zinc-binding dehydrogenase EP560_08345 PF00199 Catalase EP560_08350 PF13936 Helix-turn-helix domain EP560_08350 PF00665 Integrase core domain EP560_08365 PF13091 PLD-like domain EP560_08395 PF01244 Membrane dipeptidase (Peptidase family M19) EP560_08400 PF13186 Iron-sulfur cluster-binding domain EP560_08400 PF04055 Radical SAM superfamily EP560_08405 PF05402 Coenzyme PQQ synthesis protein D (PqqD) EP560_08410 PF03070 TENA/THI-4/PQQC family EP560_08415 PF12706 Beta-lactamase superfamily domain EP560_08420 PF08042 PqqA family EP560_08425 PF17941 Polyphosphate kinase C-terminal domain 1 EP560_08425 PF13089 Polyphosphate kinase N-terminal domain EP560_08425 PF02503 Polyphosphate kinase middle domain EP560_08425 PF13090 Polyphosphate kinase C-terminal domain 2 EP560_08430 PF00149 Calcineurin-like phosphoesterase EP560_08440 PF00550 Phosphopantetheine attachment site EP560_08440 PF00857 Isochorismatase family EP560_08445 PF00106 short chain dehydrogenase EP560_08450 PF03459 TOBE domain EP560_08450 PF00005 ABC transporter EP560_08455 PF00528 Binding-protein-dependent transport system inner membrane component EP560_08465 PF03459 TOBE domain EP560_08465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_08470 PF00355 Rieske [2Fe-2S] domain EP560_08470 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_08475 PF00866 Ring hydroxylating beta subunit EP560_08480 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_08480 PF00175 Oxidoreductase NAD-binding domain EP560_08480 PF00970 Oxidoreductase FAD-binding domain EP560_08495 PF01613 Flavin reductase like domain EP560_08510 PF01738 Dienelactone hydrolase family EP560_08515 PF07690 Major Facilitator Superfamily EP560_08520 PF12833 Helix-turn-helix domain EP560_08520 PF06719 AraC-type transcriptional regulator N-terminus EP560_08540 PF03466 LysR substrate binding domain EP560_08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_08545 PF01144 Coenzyme A transferase EP560_08550 PF01144 Coenzyme A transferase EP560_08555 PF02667 Short chain fatty acid transporter EP560_08560 PF02803 Thiolase, C-terminal domain EP560_08560 PF00108 Thiolase, N-terminal domain EP560_08565 PF03466 LysR substrate binding domain EP560_08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_08570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_08570 PF03466 LysR substrate binding domain EP560_08585 PF10415 Fumarase C C-terminus EP560_08585 PF00206 Lyase EP560_08590 PF07715 TonB-dependent Receptor Plug Domain EP560_08590 PF00593 TonB dependent receptor EP560_08595 PF00083 Sugar (and other) transporter EP560_08610 PF00005 ABC transporter EP560_08615 PF00528 Binding-protein-dependent transport system inner membrane component EP560_08620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP560_08645 PF02525 Flavodoxin-like fold EP560_08650 PF01638 HxlR-like helix-turn-helix EP560_08655 PF06445 GyrI-like small molecule binding domain EP560_08655 PF12833 Helix-turn-helix domain EP560_08670 PF01925 Sulfite exporter TauE/SafE EP560_08675 PF04273 Putative phosphatase (DUF442) EP560_08675 PF00753 Metallo-beta-lactamase superfamily EP560_08680 PF04273 Putative phosphatase (DUF442) EP560_08680 PF00753 Metallo-beta-lactamase superfamily EP560_08685 PF00158 Sigma-54 interaction domain EP560_08685 PF02954 Bacterial regulatory protein, Fis family EP560_08685 PF00072 Response regulator receiver domain EP560_08690 PF01062 Bestrophin, RFP-TM, chloride channel EP560_08695 PF08240 Alcohol dehydrogenase GroES-like domain EP560_08695 PF00107 Zinc-binding dehydrogenase EP560_08700 PF00106 short chain dehydrogenase EP560_08705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_08705 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_08710 PF00364 Biotin-requiring enzyme EP560_08710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP560_08710 PF02817 e3 binding domain EP560_08715 PF02779 Transketolase, pyrimidine binding domain EP560_08715 PF02780 Transketolase, C-terminal domain EP560_08720 PF00676 Dehydrogenase E1 component EP560_08725 PF04055 Radical SAM superfamily EP560_08745 PF01264 Chorismate synthase EP560_08750 PF05175 Methyltransferase small domain EP560_08755 PF00291 Pyridoxal-phosphate dependent enzyme EP560_08765 PF00004 ATPase family associated with various cellular activities (AAA) EP560_08765 PF17862 AAA+ lid domain EP560_08765 PF01434 Peptidase family M41 EP560_08775 PF05166 YcgL domain EP560_08795 PF00570 HRDC domain EP560_08795 PF01612 3'-5' exonuclease EP560_08800 PF02132 RecR protein EP560_08800 PF13662 Toprim domain EP560_08805 PF02575 YbaB/EbfC DNA-binding family EP560_08815 PF01053 Cys/Met metabolism PLP-dependent enzyme EP560_08820 PF00561 alpha/beta hydrolase fold EP560_08825 PF08241 Methyltransferase domain EP560_08855 PF01230 HIT domain EP560_08890 PF00005 ABC transporter EP560_08895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_08915 PF13817 IS66 C-terminal element EP560_08915 PF03050 Transposase IS66 family EP560_08915 PF13005 zinc-finger binding domain of transposase IS66 EP560_08915 PF13007 Transposase C of IS166 homeodomain EP560_08925 PF02684 Lipid-A-disaccharide synthetase EP560_08930 PF07715 TonB-dependent Receptor Plug Domain EP560_08930 PF00593 TonB dependent receptor EP560_08950 PF01925 Sulfite exporter TauE/SafE EP560_08955 PF00793 DAHP synthetase I family EP560_08960 PF02654 Cobalamin-5-phosphate synthase EP560_08975 PF02277 Phosphoribosyltransferase EP560_08980 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EP560_09020 PF07715 TonB-dependent Receptor Plug Domain EP560_09020 PF00593 TonB dependent receptor EP560_09035 PF04183 IucA / IucC family EP560_09035 PF06276 Ferric iron reductase FhuF-like transporter EP560_09040 PF04183 IucA / IucC family EP560_09040 PF06276 Ferric iron reductase FhuF-like transporter EP560_09045 PF07690 Major Facilitator Superfamily EP560_09050 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP560_09055 PF06276 Ferric iron reductase FhuF-like transporter EP560_09055 PF04183 IucA / IucC family EP560_09060 PF04073 Aminoacyl-tRNA editing domain EP560_09070 PF03109 ABC1 family EP560_09075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_09075 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_09075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_09080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_09080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_09080 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_09085 PF00487 Fatty acid desaturase EP560_09090 PF12852 Cupin EP560_09090 PF12833 Helix-turn-helix domain EP560_09095 PF09312 SurA N-terminal domain EP560_09095 PF00639 PPIC-type PPIASE domain EP560_09100 PF00216 Bacterial DNA-binding protein EP560_09115 PF02082 Transcriptional regulator EP560_09120 PF00266 Aminotransferase class-V EP560_09125 PF01592 NifU-like N terminal domain EP560_09130 PF01521 Iron-sulphur cluster biosynthesis EP560_09135 PF07743 HSCB C-terminal oligomerisation domain EP560_09135 PF00226 DnaJ domain EP560_09140 PF00012 Hsp70 protein EP560_09145 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_09150 PF00211 Adenylate and Guanylate cyclase catalytic domain EP560_09160 PF17757 UvrB interaction domain EP560_09160 PF03461 TRCF domain EP560_09160 PF00271 Helicase conserved C-terminal domain EP560_09160 PF00270 DEAD/DEAH box helicase EP560_09160 PF02559 CarD-like/TRCF domain EP560_09180 PF03737 Aldolase/RraA EP560_09185 PF13460 NAD(P)H-binding EP560_09190 PF01649 Ribosomal protein S20 EP560_09200 PF00459 Inositol monophosphatase family EP560_09215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP560_09215 PF00005 ABC transporter EP560_09220 PF00528 Binding-protein-dependent transport system inner membrane component EP560_09225 PF00528 Binding-protein-dependent transport system inner membrane component EP560_09230 PF01432 Peptidase family M3 EP560_09250 PF07715 TonB-dependent Receptor Plug Domain EP560_09250 PF00593 TonB dependent receptor EP560_09260 PF01618 MotA/TolQ/ExbB proton channel family EP560_09265 PF02472 Biopolymer transport protein ExbD/TolR EP560_09270 PF02472 Biopolymer transport protein ExbD/TolR EP560_09280 PF01274 Malate synthase EP560_09335 PF01464 Transglycosylase SLT domain EP560_09335 PF10145 Phage-related minor tail protein EP560_09335 PF01551 Peptidase family M23 EP560_09390 PF04860 Phage portal protein EP560_09465 PF03796 DnaB-like helicase C terminal domain EP560_09465 PF00772 DnaB-like helicase N terminal domain EP560_09530 PF00589 Phage integrase family EP560_09530 PF02899 Phage integrase, N-terminal SAM-like domain EP560_09535 PF03969 AFG1-like ATPase EP560_09545 PF00743 Flavin-binding monooxygenase-like EP560_09555 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EP560_09565 PF00216 Bacterial DNA-binding protein EP560_09570 PF00575 S1 RNA binding domain EP560_09575 PF02224 Cytidylate kinase EP560_09585 PF14437 MafB19-like deaminase EP560_09595 PF03167 Uracil DNA glycosylase superfamily EP560_09605 PF03934 Type II secretion system (T2SS), protein K EP560_09610 PF11612 Type II secretion system (T2SS), protein J EP560_09610 PF07963 Prokaryotic N-terminal methylation motif EP560_09615 PF07963 Prokaryotic N-terminal methylation motif EP560_09615 PF02501 Type II secretion system (T2SS), protein I EP560_09630 PF01026 TatD related DNase EP560_09640 PF09115 DNA polymerase III, delta subunit, C terminal EP560_09645 PF02348 Cytidylyltransferase EP560_09650 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EP560_09655 PF00005 ABC transporter EP560_09655 PF00664 ABC transporter transmembrane region EP560_09665 PF01618 MotA/TolQ/ExbB proton channel family EP560_09670 PF02195 ParB-like nuclease domain EP560_09670 PF17762 HTH domain found in ParB protein EP560_09675 PF13614 AAA domain EP560_09680 PF02527 rRNA small subunit methyltransferase G EP560_09685 PF00483 Nucleotidyl transferase EP560_09690 PF01636 Phosphotransferase enzyme family EP560_09695 PF03968 OstA-like protein EP560_09695 PF04453 LPS transport system D EP560_09700 PF00639 PPIC-type PPIASE domain EP560_09700 PF09312 SurA N-terminal domain EP560_09705 PF01116 Fructose-bisphosphate aldolase class-II EP560_09715 PF00162 Phosphoglycerate kinase EP560_09725 PF02545 Maf-like protein EP560_09730 PF08007 Cupin superfamily protein EP560_09745 PF00375 Sodium:dicarboxylate symporter family EP560_09750 PF06912 Protein of unknown function (DUF1275) EP560_09755 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EP560_09760 PF00664 ABC transporter transmembrane region EP560_09760 PF00005 ABC transporter EP560_09770 PF12833 Helix-turn-helix domain EP560_09770 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP560_09775 PF01597 Glycine cleavage H-protein EP560_09780 PF02146 Sir2 family EP560_09785 PF00474 Sodium:solute symporter family EP560_09790 PF01037 Lrp/AsnC ligand binding domain EP560_09795 PF00171 Aldehyde dehydrogenase family EP560_09795 PF01619 Proline dehydrogenase EP560_09795 PF14850 DNA-binding domain of Proline dehydrogenase EP560_09795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EP560_09800 PF04229 GrpB protein EP560_09805 PF05958 tRNA (Uracil-5-)-methyltransferase EP560_09815 PF09992 Phosphodiester glycosidase EP560_09825 PF04264 YceI-like domain EP560_09835 PF00456 Transketolase, thiamine diphosphate binding domain EP560_09835 PF02780 Transketolase, C-terminal domain EP560_09835 PF02779 Transketolase, pyrimidine binding domain EP560_09840 PF02773 S-adenosylmethionine synthetase, C-terminal domain EP560_09840 PF02772 S-adenosylmethionine synthetase, central domain EP560_09840 PF00438 S-adenosylmethionine synthetase, N-terminal domain EP560_09865 PF00905 Penicillin binding protein transpeptidase domain EP560_09880 PF02075 Crossover junction endodeoxyribonuclease RuvC EP560_09885 PF03853 YjeF-related protein N-terminus EP560_09885 PF01256 Carbohydrate kinase EP560_09890 PF08331 Domain of unknown function (DUF1730) EP560_09895 PF06968 Biotin and Thiamin Synthesis associated domain EP560_09895 PF04055 Radical SAM superfamily EP560_09910 PF16970 Type-1 fimbrial protein, A EP560_09915 PF02753 Pili assembly chaperone PapD, C-terminal domain EP560_09915 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP560_09920 PF13953 PapC C-terminal domain EP560_09920 PF00577 Outer membrane usher protein EP560_09920 PF13954 PapC N-terminal domain EP560_09950 PF00892 EamA-like transporter family EP560_09960 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP560_09970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_09970 PF03466 LysR substrate binding domain EP560_09980 PF13737 Transposase DDE domain EP560_10000 PF00440 Bacterial regulatory proteins, tetR family EP560_10010 PF01709 Transcriptional regulator EP560_10015 PF01037 Lrp/AsnC ligand binding domain EP560_10025 PF00005 ABC transporter EP560_10030 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10035 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_10060 PF00296 Luciferase-like monooxygenase EP560_10065 PF03180 NLPA lipoprotein EP560_10070 PF03180 NLPA lipoprotein EP560_10075 PF00005 ABC transporter EP560_10075 PF09383 NIL domain EP560_10080 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10085 PF06071 Protein of unknown function (DUF933) EP560_10085 PF01926 50S ribosome-binding GTPase EP560_10110 PF03591 AzlC protein EP560_10115 PF05437 Branched-chain amino acid transport protein (AzlD) EP560_10125 PF02222 ATP-grasp domain EP560_10130 PF08335 GlnD PII-uridylyltransferase EP560_10130 PF01966 HD domain EP560_10130 PF01909 Nucleotidyltransferase domain EP560_10135 PF00155 Aminotransferase class I and II EP560_10145 PF12852 Cupin EP560_10145 PF12833 Helix-turn-helix domain EP560_10150 PF00255 Glutathione peroxidase EP560_10155 PF01641 SelR domain EP560_10160 PF00155 Aminotransferase class I and II EP560_10165 PF13737 Transposase DDE domain EP560_10170 PF00375 Sodium:dicarboxylate symporter family EP560_10175 PF00710 Asparaginase, N-terminal EP560_10175 PF17763 Glutaminase/Asparaginase C-terminal domain EP560_10180 PF14579 Helix-hairpin-helix motif EP560_10180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP560_10180 PF01336 OB-fold nucleic acid binding domain EP560_10180 PF02811 PHP domain EP560_10180 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP560_10185 PF00588 SpoU rRNA Methylase family EP560_10190 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_10205 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_10205 PF13192 Thioredoxin domain EP560_10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10220 PF03466 LysR substrate binding domain EP560_10225 PF01758 Sodium Bile acid symporter family EP560_10230 PF01022 Bacterial regulatory protein, arsR family EP560_10235 PF03960 ArsC family EP560_10245 PF01979 Amidohydrolase family EP560_10245 PF13382 Adenine deaminase C-terminal domain EP560_10255 PF03466 LysR substrate binding domain EP560_10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10265 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP560_10270 PF01177 Asp/Glu/Hydantoin racemase EP560_10275 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP560_10280 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10285 PF00005 ABC transporter EP560_10290 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP560_10310 PF00083 Sugar (and other) transporter EP560_10315 PF00296 Luciferase-like monooxygenase EP560_10320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_10320 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_10320 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_10335 PF01654 Cytochrome bd terminal oxidase subunit I EP560_10340 PF02322 Cytochrome bd terminal oxidase subunit II EP560_10350 PF00392 Bacterial regulatory proteins, gntR family EP560_10350 PF00155 Aminotransferase class I and II EP560_10355 PF03466 LysR substrate binding domain EP560_10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10370 PF00698 Acyl transferase domain EP560_10375 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG EP560_10385 PF01039 Carboxyl transferase domain EP560_10390 PF06857 Malonate decarboxylase delta subunit (MdcD) EP560_10395 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase EP560_10400 PF16957 Malonate decarboxylase, alpha subunit, transporter EP560_10405 PF07690 Major Facilitator Superfamily EP560_10420 PF00392 Bacterial regulatory proteins, gntR family EP560_10420 PF00155 Aminotransferase class I and II EP560_10425 PF04172 LrgB-like family EP560_10430 PF03788 LrgA family EP560_10435 PF03466 LysR substrate binding domain EP560_10435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10440 PF14834 Glutathione S-transferase, C-terminal domain EP560_10440 PF02798 Glutathione S-transferase, N-terminal domain EP560_10445 PF02798 Glutathione S-transferase, N-terminal domain EP560_10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10450 PF03466 LysR substrate binding domain EP560_10460 PF00581 Rhodanese-like domain EP560_10465 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_10475 PF00266 Aminotransferase class-V EP560_10485 PF01810 LysE type translocator EP560_10490 PF03466 LysR substrate binding domain EP560_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10500 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_10505 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_10510 PF00005 ABC transporter EP560_10515 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10520 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10535 PF00072 Response regulator receiver domain EP560_10540 PF09308 LuxQ, periplasmic EP560_10540 PF00072 Response regulator receiver domain EP560_10540 PF00512 His Kinase A (phospho-acceptor) domain EP560_10540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_10550 PF01037 Lrp/AsnC ligand binding domain EP560_10550 PF13404 AsnC-type helix-turn-helix domain EP560_10560 PF00717 Peptidase S24-like EP560_10585 PF18011 C-terminal domain found in long catalases EP560_10585 PF06628 Catalase-related immune-responsive EP560_10585 PF00199 Catalase EP560_10595 PF18146 Damage-inducible protein CinA KH domain EP560_10595 PF02464 Competence-damaged protein EP560_10595 PF00994 Probable molybdopterin binding domain EP560_10625 PF03466 LysR substrate binding domain EP560_10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10645 PF13193 AMP-binding enzyme C-terminal domain EP560_10645 PF00501 AMP-binding enzyme EP560_10650 PF00440 Bacterial regulatory proteins, tetR family EP560_10655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_10655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_10655 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_10660 PF01039 Carboxyl transferase domain EP560_10665 PF00378 Enoyl-CoA hydratase/isomerase EP560_10670 PF02785 Biotin carboxylase C-terminal domain EP560_10670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_10670 PF00364 Biotin-requiring enzyme EP560_10670 PF00289 Biotin carboxylase, N-terminal domain EP560_10675 PF00682 HMGL-like EP560_10680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_10680 PF03466 LysR substrate binding domain EP560_10695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_10695 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_10695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_10695 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_10705 PF07690 Major Facilitator Superfamily EP560_10715 PF01144 Coenzyme A transferase EP560_10720 PF01144 Coenzyme A transferase EP560_10725 PF07690 Major Facilitator Superfamily EP560_10730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_10730 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_10730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_10735 PF00378 Enoyl-CoA hydratase/isomerase EP560_10745 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP560_10745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_10745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_10750 PF02803 Thiolase, C-terminal domain EP560_10750 PF00108 Thiolase, N-terminal domain EP560_10755 PF09339 IclR helix-turn-helix domain EP560_10760 PF07690 Major Facilitator Superfamily EP560_10765 PF03060 Nitronate monooxygenase EP560_10770 PF00378 Enoyl-CoA hydratase/isomerase EP560_10775 PF09339 IclR helix-turn-helix domain EP560_10780 PF02515 CoA-transferase family III EP560_10785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_10785 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_10785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_10790 PF07690 Major Facilitator Superfamily EP560_10795 PF13419 Haloacid dehalogenase-like hydrolase EP560_10800 PF00266 Aminotransferase class-V EP560_10805 PF01266 FAD dependent oxidoreductase EP560_10810 PF00528 Binding-protein-dependent transport system inner membrane component EP560_10815 PF00005 ABC transporter EP560_10815 PF08402 TOBE domain EP560_10825 PF00392 Bacterial regulatory proteins, gntR family EP560_10825 PF07702 UTRA domain EP560_10830 PF01494 FAD binding domain EP560_10835 PF01614 Bacterial transcriptional regulator EP560_10835 PF09339 IclR helix-turn-helix domain EP560_10845 PF13610 DDE domain EP560_10855 PF01695 IstB-like ATP binding protein EP560_10870 PF00809 Pterin binding enzyme EP560_10875 PF00893 Small Multidrug Resistance protein EP560_10880 PF01909 Nucleotidyltransferase domain EP560_10880 PF13427 Domain of unknown function (DUF4111) EP560_10885 PF10706 Aminoglycoside-2''-adenylyltransferase EP560_10890 PF00589 Phage integrase family EP560_10890 PF13495 Phage integrase, N-terminal SAM-like domain EP560_10900 PF02796 Helix-turn-helix domain of resolvase EP560_10900 PF00239 Resolvase, N terminal domain EP560_10905 PF13610 DDE domain EP560_10915 PF06719 AraC-type transcriptional regulator N-terminus EP560_10915 PF12833 Helix-turn-helix domain EP560_10925 PF00313 'Cold-shock' DNA-binding domain EP560_10965 PF02151 UvrB/uvrC motif EP560_10965 PF12344 Ultra-violet resistance protein B EP560_10965 PF17757 UvrB interaction domain EP560_10965 PF04851 Type III restriction enzyme, res subunit EP560_10965 PF00271 Helicase conserved C-terminal domain EP560_10975 PF03061 Thioesterase superfamily EP560_10980 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_10985 PF07848 PaaX-like protein EP560_10985 PF08223 PaaX-like protein C-terminal domain EP560_10990 PF14535 AMP-binding enzyme C-terminal domain EP560_10990 PF00501 AMP-binding enzyme EP560_10995 PF00108 Thiolase, N-terminal domain EP560_10995 PF02803 Thiolase, C-terminal domain EP560_11000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_11000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_11000 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP560_11005 PF00378 Enoyl-CoA hydratase/isomerase EP560_11010 PF00378 Enoyl-CoA hydratase/isomerase EP560_11015 PF00970 Oxidoreductase FAD-binding domain EP560_11015 PF00175 Oxidoreductase NAD-binding domain EP560_11015 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_11020 PF01883 Iron-sulfur cluster assembly protein EP560_11025 PF05138 Phenylacetic acid catabolic protein EP560_11030 PF06243 Phenylacetic acid degradation B EP560_11035 PF05138 Phenylacetic acid catabolic protein EP560_11040 PF00171 Aldehyde dehydrogenase family EP560_11040 PF01575 MaoC like domain EP560_11045 PF03315 Serine dehydratase beta chain EP560_11045 PF03313 Serine dehydratase alpha chain EP560_11050 PF13520 Amino acid permease EP560_11055 PF00171 Aldehyde dehydrogenase family EP560_11060 PF00083 Sugar (and other) transporter EP560_11070 PF04324 BFD-like [2Fe-2S] binding domain EP560_11070 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_11080 PF01266 FAD dependent oxidoreductase EP560_11085 PF05544 Proline racemase EP560_11090 PF00392 Bacterial regulatory proteins, gntR family EP560_11100 PF00701 Dihydrodipicolinate synthetase family EP560_11115 PF09278 MerR, DNA binding EP560_11115 PF00376 MerR family regulatory protein EP560_11125 PF02677 Epoxyqueuosine reductase QueH EP560_11140 PF07690 Major Facilitator Superfamily EP560_11145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP560_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_11155 PF03466 LysR substrate binding domain EP560_11185 PF17871 AAA lid domain EP560_11185 PF00004 ATPase family associated with various cellular activities (AAA) EP560_11185 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_11185 PF07724 AAA domain (Cdc48 subfamily) EP560_11195 PF01389 OmpA-like transmembrane domain EP560_11195 PF00691 OmpA family EP560_11270 PF00005 ABC transporter EP560_11275 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_11280 PF01425 Amidase EP560_11285 PF01402 Ribbon-helix-helix protein, copG family EP560_11285 PF08753 NikR C terminal nickel binding domain EP560_11305 PF02525 Flavodoxin-like fold EP560_11310 PF02785 Biotin carboxylase C-terminal domain EP560_11310 PF00289 Biotin carboxylase, N-terminal domain EP560_11310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_11335 PF00107 Zinc-binding dehydrogenase EP560_11335 PF08240 Alcohol dehydrogenase GroES-like domain EP560_11335 PF13823 Alcohol dehydrogenase GroES-associated EP560_11345 PF00440 Bacterial regulatory proteins, tetR family EP560_11370 PF00654 Voltage gated chloride channel EP560_11375 PF00364 Biotin-requiring enzyme EP560_11375 PF00289 Biotin carboxylase, N-terminal domain EP560_11375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_11375 PF02785 Biotin carboxylase C-terminal domain EP560_11385 PF07286 Protein of unknown function (DUF1445) EP560_11390 PF03746 LamB/YcsF family EP560_11395 PF01566 Natural resistance-associated macrophage protein EP560_11400 PF03466 LysR substrate binding domain EP560_11400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_11415 PF14220 Domain of unknown function (DUF4329) EP560_11415 PF05593 RHS Repeat EP560_11415 PF03527 RHS protein EP560_11420 PF04717 Type VI secretion system, phage-baseplate injector EP560_11420 PF16671 Actin cross-linking domain EP560_11425 PF03050 Transposase IS66 family EP560_11425 PF13817 IS66 C-terminal element EP560_11425 PF13007 Transposase C of IS166 homeodomain EP560_11425 PF13005 zinc-finger binding domain of transposase IS66 EP560_11445 PF13419 Haloacid dehalogenase-like hydrolase EP560_11465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_11465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_11485 PF07690 Major Facilitator Superfamily EP560_11500 PF03279 Bacterial lipid A biosynthesis acyltransferase EP560_11505 PF00990 Diguanylate cyclase, GGDEF domain EP560_11505 PF00563 EAL domain EP560_11505 PF03707 Bacterial signalling protein N terminal repeat EP560_11510 PF00892 EamA-like transporter family EP560_11515 PF01037 Lrp/AsnC ligand binding domain EP560_11520 PF00488 MutS domain V EP560_11520 PF05188 MutS domain II EP560_11520 PF05190 MutS family domain IV EP560_11520 PF05192 MutS domain III EP560_11520 PF01624 MutS domain I EP560_11530 PF11953 Domain of unknown function (DUF3470) EP560_11530 PF00037 4Fe-4S binding domain EP560_11540 PF01596 O-methyltransferase EP560_11550 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_11555 PF01205 Uncharacterized protein family UPF0029 EP560_11565 PF03412 Peptidase C39 family EP560_11565 PF00005 ABC transporter EP560_11565 PF00664 ABC transporter transmembrane region EP560_11570 PF02321 Outer membrane efflux protein EP560_11575 PF00005 ABC transporter EP560_11575 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP560_11580 PF03968 OstA-like protein EP560_11595 PF00571 CBS domain EP560_11595 PF01380 SIS domain EP560_11600 PF09190 DALR domain EP560_11600 PF01406 tRNA synthetases class I (C) catalytic domain EP560_11620 PF13936 Helix-turn-helix domain EP560_11620 PF00665 Integrase core domain EP560_11625 PF01636 Phosphotransferase enzyme family EP560_11630 PF13936 Helix-turn-helix domain EP560_11630 PF00665 Integrase core domain EP560_11645 PF01638 HxlR-like helix-turn-helix EP560_11650 PF07690 Major Facilitator Superfamily EP560_11680 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP560_11680 PF03807 NADP oxidoreductase coenzyme F420-dependent EP560_11690 PF00313 'Cold-shock' DNA-binding domain EP560_11695 PF01810 LysE type translocator EP560_11730 PF13742 OB-fold nucleic acid binding domain EP560_11730 PF02601 Exonuclease VII, large subunit EP560_11760 PF13737 Transposase DDE domain EP560_11780 PF00376 MerR family regulatory protein EP560_11780 PF09278 MerR, DNA binding EP560_11785 PF00403 Heavy-metal-associated domain EP560_11790 PF00403 Heavy-metal-associated domain EP560_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_11795 PF03466 LysR substrate binding domain EP560_11800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_11800 PF00355 Rieske [2Fe-2S] domain EP560_11805 PF00866 Ring hydroxylating beta subunit EP560_11810 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_11810 PF00175 Oxidoreductase NAD-binding domain EP560_11810 PF00970 Oxidoreductase FAD-binding domain EP560_11815 PF00106 short chain dehydrogenase EP560_11820 PF03594 Benzoate membrane transport protein EP560_11825 PF07690 Major Facilitator Superfamily EP560_11835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP560_11835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP560_11840 PF00270 DEAD/DEAH box helicase EP560_11840 PF11898 Domain of unknown function (DUF3418) EP560_11840 PF04408 Helicase associated domain (HA2) EP560_11840 PF00271 Helicase conserved C-terminal domain EP560_11840 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EP560_11845 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP560_11845 PF00578 AhpC/TSA family EP560_11865 PF13192 Thioredoxin domain EP560_11865 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_11875 PF00043 Glutathione S-transferase, C-terminal domain EP560_11875 PF02798 Glutathione S-transferase, N-terminal domain EP560_11885 PF02390 Putative methyltransferase EP560_11890 PF00043 Glutathione S-transferase, C-terminal domain EP560_11890 PF13417 Glutathione S-transferase, N-terminal domain EP560_11900 PF13488 Glycine zipper EP560_11900 PF00691 OmpA family EP560_11905 PF01979 Amidohydrolase family EP560_11910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP560_11910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP560_11920 PF01170 Putative RNA methylase family UPF0020 EP560_11920 PF10672 S-adenosylmethionine-dependent methyltransferase EP560_11920 PF02926 THUMP domain EP560_11935 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_11935 PF02861 Clp amino terminal domain, pathogenicity island component EP560_11935 PF07724 AAA domain (Cdc48 subfamily) EP560_11935 PF17871 AAA lid domain EP560_11935 PF00004 ATPase family associated with various cellular activities (AAA) EP560_11950 PF02566 OsmC-like protein EP560_11955 PF00027 Cyclic nucleotide-binding domain EP560_11955 PF13545 Crp-like helix-turn-helix domain EP560_11960 PF00248 Aldo/keto reductase family EP560_11975 PF00709 Adenylosuccinate synthetase EP560_11980 PF13393 Histidyl-tRNA synthetase EP560_11985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP560_11985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP560_11990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP560_11990 PF01411 tRNA synthetases class II (A) EP560_11990 PF02272 DHHA1 domain EP560_11995 PF01842 ACT domain EP560_11995 PF00696 Amino acid kinase family EP560_11995 PF13840 ACT domain EP560_12005 PF13610 DDE domain EP560_12015 PF16671 Actin cross-linking domain EP560_12015 PF04717 Type VI secretion system, phage-baseplate injector EP560_12030 PF03180 NLPA lipoprotein EP560_12035 PF05987 Bacterial protein of unknown function (DUF898) EP560_12050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_12050 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_12055 PF00764 Arginosuccinate synthase EP560_12060 PF00563 EAL domain EP560_12060 PF01590 GAF domain EP560_12060 PF00990 Diguanylate cyclase, GGDEF domain EP560_12060 PF00360 Phytochrome region EP560_12065 PF01979 Amidohydrolase family EP560_12070 PF00929 Exonuclease EP560_12080 PF00593 TonB dependent receptor EP560_12080 PF07715 TonB-dependent Receptor Plug Domain EP560_12085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_12085 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_12090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP560_12090 PF00005 ABC transporter EP560_12095 PF00528 Binding-protein-dependent transport system inner membrane component EP560_12095 PF12911 N-terminal TM domain of oligopeptide transport permease C EP560_12100 PF00528 Binding-protein-dependent transport system inner membrane component EP560_12105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EP560_12110 PF01464 Transglycosylase SLT domain EP560_12110 PF01476 LysM domain EP560_12110 PF01464 Transglycosylase SLT domain EP560_12110 PF01476 LysM domain EP560_12115 PF00929 Exonuclease EP560_12125 PF00293 NUDIX domain EP560_12125 PF09297 NADH pyrophosphatase zinc ribbon domain EP560_12135 PF04972 BON domain EP560_12140 PF02021 Uncharacterised protein family UPF0102 EP560_12145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP560_12155 PF03466 LysR substrate binding domain EP560_12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_12160 PF01810 LysE type translocator EP560_12170 PF13411 MerR HTH family regulatory protein EP560_12180 PF01494 FAD binding domain EP560_12185 PF01494 FAD binding domain EP560_12190 PF05195 Aminopeptidase P, N-terminal domain EP560_12190 PF00557 Metallopeptidase family M24 EP560_12240 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP560_12535 PF00117 Glutamine amidotransferase class-I EP560_12540 PF11838 ERAP1-like C-terminal domain EP560_12540 PF01433 Peptidase family M1 domain EP560_12545 PF07715 TonB-dependent Receptor Plug Domain EP560_12545 PF00593 TonB dependent receptor EP560_12550 PF00591 Glycosyl transferase family, a/b domain EP560_12550 PF02885 Glycosyl transferase family, helical bundle domain EP560_12555 PF00218 Indole-3-glycerol phosphate synthase EP560_12570 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP560_12570 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP560_12575 PF01799 [2Fe-2S] binding domain EP560_12575 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_12590 PF00144 Beta-lactamase EP560_12605 PF05675 Protein of unknown function (DUF817) EP560_12610 PF01208 Uroporphyrinogen decarboxylase (URO-D) EP560_12620 PF00425 chorismate binding enzyme EP560_12630 PF00975 Thioesterase domain EP560_12635 PF00664 ABC transporter transmembrane region EP560_12635 PF00005 ABC transporter EP560_12640 PF00005 ABC transporter EP560_12640 PF00664 ABC transporter transmembrane region EP560_12650 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP560_12655 PF00550 Phosphopantetheine attachment site EP560_12655 PF00857 Isochorismatase family EP560_12660 PF13193 AMP-binding enzyme C-terminal domain EP560_12660 PF00501 AMP-binding enzyme EP560_12665 PF00668 Condensation domain EP560_12665 PF00501 AMP-binding enzyme EP560_12665 PF00550 Phosphopantetheine attachment site EP560_12670 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP560_12685 PF00593 TonB dependent receptor EP560_12685 PF07715 TonB-dependent Receptor Plug Domain EP560_12690 PF01497 Periplasmic binding protein EP560_12695 PF00005 ABC transporter EP560_12700 PF01032 FecCD transport family EP560_12705 PF01032 FecCD transport family EP560_12710 PF00501 AMP-binding enzyme EP560_12710 PF00668 Condensation domain EP560_12710 PF00550 Phosphopantetheine attachment site EP560_12710 PF00975 Thioesterase domain EP560_12710 PF13193 AMP-binding enzyme C-terminal domain EP560_12715 PF00668 Condensation domain EP560_12715 PF00550 Phosphopantetheine attachment site EP560_12715 PF13193 AMP-binding enzyme C-terminal domain EP560_12715 PF00501 AMP-binding enzyme EP560_12725 PF08348 YheO-like PAS domain EP560_12725 PF13309 HTH domain EP560_12735 PF17954 Quercetinase C-terminal cupin domain EP560_12735 PF02678 Pirin EP560_12755 PF00440 Bacterial regulatory proteins, tetR family EP560_12760 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_12760 PF14765 Polyketide synthase dehydratase EP560_12760 PF00550 Phosphopantetheine attachment site EP560_12760 PF08659 KR domain EP560_12760 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_12760 PF16197 Ketoacyl-synthetase C-terminal extension EP560_12760 PF08990 Erythronolide synthase docking EP560_12760 PF08240 Alcohol dehydrogenase GroES-like domain EP560_12760 PF09277 Erythronolide synthase, docking EP560_12760 PF00698 Acyl transferase domain EP560_12765 PF13378 Enolase C-terminal domain-like EP560_12765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP560_12770 PF00083 Sugar (and other) transporter EP560_12775 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system EP560_12785 PF00892 EamA-like transporter family EP560_12805 PF01266 FAD dependent oxidoreductase EP560_12805 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP560_12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_12810 PF18113 Rubredoxin binding C-terminal domain EP560_12820 PF00355 Rieske [2Fe-2S] domain EP560_12820 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_12825 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_12830 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_12835 PF03466 LysR substrate binding domain EP560_12835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_12840 PF00324 Amino acid permease EP560_12845 PF00171 Aldehyde dehydrogenase family EP560_12860 PF06018 CodY GAF-like domain EP560_12860 PF17853 GGDEF-like domain EP560_12860 PF13556 PucR C-terminal helix-turn-helix domain EP560_12895 PF04328 Selenoprotein, putative EP560_12900 PF02554 Carbon starvation protein CstA EP560_12900 PF13722 5TM C-terminal transporter carbon starvation CstA EP560_12905 PF01132 Elongation factor P (EF-P) OB domain EP560_12905 PF09285 Elongation factor P, C-terminal EP560_12905 PF08207 Elongation factor P (EF-P) KOW-like domain EP560_12910 PF04055 Radical SAM superfamily EP560_12925 PF01197 Ribosomal protein L31 EP560_12930 PF13593 SBF-like CPA transporter family (DUF4137) EP560_12935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_12940 PF07690 Major Facilitator Superfamily EP560_12945 PF05362 Lon protease (S16) C-terminal proteolytic domain EP560_12945 PF13654 AAA domain EP560_12950 PF03466 LysR substrate binding domain EP560_12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_12955 PF01551 Peptidase family M23 EP560_12955 PF01476 LysM domain EP560_12960 PF01975 Survival protein SurE EP560_12975 PF00768 D-alanyl-D-alanine carboxypeptidase EP560_12975 PF07943 Penicillin-binding protein 5, C-terminal domain EP560_12980 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_12985 PF13344 Haloacid dehalogenase-like hydrolase EP560_12985 PF00293 NUDIX domain EP560_12995 PF04356 Protein of unknown function (DUF489) EP560_13000 PF08328 Adenylosuccinate lyase C-terminal EP560_13000 PF00206 Lyase EP560_13015 PF01343 Peptidase family S49 EP560_13015 PF08496 Peptidase family S49 N-terminal EP560_13020 PF00005 ABC transporter EP560_13025 PF00528 Binding-protein-dependent transport system inner membrane component EP560_13030 PF00528 Binding-protein-dependent transport system inner membrane component EP560_13035 PF12849 PBP superfamily domain EP560_13040 PF00324 Amino acid permease EP560_13045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP560_13045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP560_13045 PF00205 Thiamine pyrophosphate enzyme, central domain EP560_13050 PF01037 Lrp/AsnC ligand binding domain EP560_13055 PF00171 Aldehyde dehydrogenase family EP560_13060 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP560_13065 PF00202 Aminotransferase class-III EP560_13075 PF00440 Bacterial regulatory proteins, tetR family EP560_13075 PF17754 MftR C-terminal domain EP560_13085 PF00487 Fatty acid desaturase EP560_13090 PF00970 Oxidoreductase FAD-binding domain EP560_13090 PF00175 Oxidoreductase NAD-binding domain EP560_13090 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_13095 PF00440 Bacterial regulatory proteins, tetR family EP560_13105 PF18337 RapA N-terminal Tudor like domain EP560_13105 PF18339 RapA N-terminal Tudor like domain 1 EP560_13105 PF00176 SNF2 family N-terminal domain EP560_13105 PF12137 RNA polymerase recycling family C-terminal EP560_13105 PF00271 Helicase conserved C-terminal domain EP560_13110 PF00849 RNA pseudouridylate synthase EP560_13120 PF00202 Aminotransferase class-III EP560_13125 PF02581 Thiamine monophosphate synthase EP560_13150 PF05193 Peptidase M16 inactive domain EP560_13150 PF00675 Insulinase (Peptidase family M16) EP560_13155 PF02567 Phenazine biosynthesis-like protein EP560_13165 PF03466 LysR substrate binding domain EP560_13165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_13170 PF06779 Uncharacterised MFS-type transporter YbfB EP560_13190 PF00180 Isocitrate/isopropylmalate dehydrogenase EP560_13195 PF00849 RNA pseudouridylate synthase EP560_13200 PF03971 Monomeric isocitrate dehydrogenase EP560_13210 PF07943 Penicillin-binding protein 5, C-terminal domain EP560_13210 PF00768 D-alanyl-D-alanine carboxypeptidase EP560_13215 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_13220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_13225 PF03441 FAD binding domain of DNA photolyase EP560_13225 PF00875 DNA photolyase EP560_13255 PF02350 UDP-N-acetylglucosamine 2-epimerase EP560_13270 PF03060 Nitronate monooxygenase EP560_13275 PF01207 Dihydrouridine synthase (Dus) EP560_13280 PF07759 Protein of unknown function (DUF1615) EP560_13290 PF01472 PUA domain EP560_13290 PF00696 Amino acid kinase family EP560_13295 PF01926 50S ribosome-binding GTPase EP560_13295 PF01018 GTP1/OBG EP560_13320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP560_13320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP560_13325 PF00892 EamA-like transporter family EP560_13335 PF00271 Helicase conserved C-terminal domain EP560_13335 PF02151 UvrB/uvrC motif EP560_13335 PF17757 UvrB interaction domain EP560_13335 PF04851 Type III restriction enzyme, res subunit EP560_13335 PF12344 Ultra-violet resistance protein B EP560_13345 PF00990 Diguanylate cyclase, GGDEF domain EP560_13345 PF17151 Periplasmic sensor domain EP560_13385 PF00106 short chain dehydrogenase EP560_13390 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EP560_13395 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EP560_13400 PF11967 Recombination protein O N terminal EP560_13400 PF02565 Recombination protein O C terminal EP560_13410 PF01926 50S ribosome-binding GTPase EP560_13410 PF07650 KH domain EP560_13415 PF00035 Double-stranded RNA binding motif EP560_13415 PF14622 Ribonuclease-III-like EP560_13425 PF10502 Signal peptidase, peptidase S26 EP560_13430 PF00679 Elongation factor G C-terminus EP560_13430 PF00009 Elongation factor Tu GTP binding domain EP560_13430 PF03144 Elongation factor Tu domain 2 EP560_13430 PF06421 GTP-binding protein LepA C-terminus EP560_13440 PF13180 PDZ domain EP560_13445 PF00890 FAD binding domain EP560_13445 PF02910 Fumarate reductase flavoprotein C-term EP560_13455 PF02223 Thymidylate kinase EP560_13460 PF02618 YceG-like family EP560_13465 PF01063 Amino-transferase class IV EP560_13480 PF00528 Binding-protein-dependent transport system inner membrane component EP560_13485 PF00528 Binding-protein-dependent transport system inner membrane component EP560_13490 PF00005 ABC transporter EP560_13490 PF12857 TOBE-like domain EP560_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_13495 PF03466 LysR substrate binding domain EP560_13505 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EP560_13505 PF14602 Hexapeptide repeat of succinyl-transferase EP560_13505 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_13515 PF06508 Queuosine biosynthesis protein QueC EP560_13530 PF00578 AhpC/TSA family EP560_13540 PF00293 NUDIX domain EP560_13540 PF01467 Cytidylyltransferase-like EP560_13545 PF00378 Enoyl-CoA hydratase/isomerase EP560_13550 PF01784 NIF3 (NGG1p interacting factor 3) EP560_13555 PF07690 Major Facilitator Superfamily EP560_13560 PF02769 AIR synthase related protein, C-terminal domain EP560_13560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EP560_13560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EP560_13565 PF01966 HD domain EP560_13570 PF07499 RuvA, C-terminal domain EP560_13570 PF01330 RuvA N terminal domain EP560_13575 PF17864 RuvB AAA lid domain EP560_13575 PF05496 Holliday junction DNA helicase RuvB P-loop domain EP560_13575 PF05491 RuvB C-terminal winged helix domain EP560_13580 PF07687 Peptidase dimerisation domain EP560_13580 PF01546 Peptidase family M20/M25/M40 EP560_13585 PF03061 Thioesterase superfamily EP560_13590 PF01618 MotA/TolQ/ExbB proton channel family EP560_13595 PF02472 Biopolymer transport protein ExbD/TolR EP560_13605 PF07676 WD40-like Beta Propeller Repeat EP560_13605 PF04052 TolB amino-terminal domain EP560_13610 PF00691 OmpA family EP560_13620 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP560_13625 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP560_13625 PF00588 SpoU rRNA Methylase family EP560_13665 PF08299 Bacterial dnaA protein helix-turn-helix EP560_13665 PF11638 DnaA N-terminal domain EP560_13665 PF00308 Bacterial dnaA protein EP560_13670 PF01594 AI-2E family transporter EP560_13675 PF00586 AIR synthase related protein, N-terminal domain EP560_13675 PF02769 AIR synthase related protein, C-terminal domain EP560_13680 PF00551 Formyl transferase EP560_13685 PF12697 Alpha/beta hydrolase family EP560_13690 PF06965 Na+/H+ antiporter 1 EP560_13690 PF01343 Peptidase family S49 EP560_13700 PF00753 Metallo-beta-lactamase superfamily EP560_13700 PF03772 Competence protein EP560_13700 PF13567 Domain of unknown function (DUF4131) EP560_13705 PF00005 ABC transporter EP560_13710 PF12704 MacB-like periplasmic core domain EP560_13710 PF02687 FtsX-like permease family EP560_13720 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EP560_13730 PF00266 Aminotransferase class-V EP560_13740 PF13533 Biotin-lipoyl like EP560_13760 PF00535 Glycosyl transferase family 2 EP560_13775 PF00521 DNA gyrase/topoisomerase IV, subunit A EP560_13775 PF03989 DNA gyrase C-terminal domain, beta-propeller EP560_13780 PF00766 Electron transfer flavoprotein FAD-binding domain EP560_13780 PF01012 Electron transfer flavoprotein domain EP560_13785 PF01012 Electron transfer flavoprotein domain EP560_13790 PF00589 Phage integrase family EP560_13790 PF02899 Phage integrase, N-terminal SAM-like domain EP560_13795 PF01810 LysE type translocator EP560_13800 PF01678 Diaminopimelate epimerase EP560_13805 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP560_13805 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP560_13815 PF00324 Amino acid permease EP560_13820 PF18073 Rubredoxin metal binding domain EP560_13830 PF00152 tRNA synthetases class II (D, K and N) EP560_13835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_13835 PF11890 Domain of unknown function (DUF3410) EP560_13835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_13840 PF06803 Protein of unknown function (DUF1232) EP560_13845 PF02634 FdhD/NarQ family EP560_13850 PF00384 Molybdopterin oxidoreductase EP560_13855 PF02595 Glycerate kinase family EP560_13870 PF00881 Nitroreductase family EP560_13895 PF00665 Integrase core domain EP560_13895 PF13936 Helix-turn-helix domain EP560_13905 PF00975 Thioesterase domain EP560_13905 PF00550 Phosphopantetheine attachment site EP560_13905 PF00668 Condensation domain EP560_13905 PF13193 AMP-binding enzyme C-terminal domain EP560_13905 PF00501 AMP-binding enzyme EP560_13920 PF01272 Transcription elongation factor, GreA/GreB, C-term EP560_13920 PF03449 Transcription elongation factor, N-terminal EP560_13925 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_13925 PF01464 Transglycosylase SLT domain EP560_13935 PF01171 PP-loop family EP560_13945 PF01464 Transglycosylase SLT domain EP560_13950 PF01435 Peptidase family M48 EP560_13960 PF00873 AcrB/AcrD/AcrF family EP560_13965 PF03009 Glycerophosphoryl diester phosphodiesterase family EP560_13970 PF00753 Metallo-beta-lactamase superfamily EP560_13975 PF01219 Prokaryotic diacylglycerol kinase EP560_13980 PF00118 TCP-1/cpn60 chaperonin family EP560_13985 PF00166 Chaperonin 10 Kd subunit EP560_13995 PF00149 Calcineurin-like phosphoesterase EP560_14000 PF00781 Diacylglycerol kinase catalytic domain EP560_14005 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain EP560_14005 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain EP560_14010 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EP560_14010 PF01266 FAD dependent oxidoreductase EP560_14015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP560_14015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP560_14020 PF00083 Sugar (and other) transporter EP560_14035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EP560_14035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EP560_14050 PF16655 PhoD-like phosphatase, N-terminal domain EP560_14050 PF09423 PhoD-like phosphatase EP560_14075 PF00809 Pterin binding enzyme EP560_14080 PF01434 Peptidase family M41 EP560_14080 PF06480 FtsH Extracellular EP560_14080 PF17862 AAA+ lid domain EP560_14080 PF00004 ATPase family associated with various cellular activities (AAA) EP560_14085 PF01728 FtsJ-like methyltransferase EP560_14090 PF01985 CRS1 / YhbY (CRM) domain EP560_14105 PF00117 Glutamine amidotransferase class-I EP560_14105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EP560_14110 PF02142 MGS-like domain EP560_14110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP560_14110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_14115 PF01272 Transcription elongation factor, GreA/GreB, C-term EP560_14115 PF03449 Transcription elongation factor, N-terminal EP560_14120 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_14125 PF00582 Universal stress protein family EP560_14130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP560_14140 PF09587 Bacterial capsule synthesis protein PGA_cap EP560_14155 PF00999 Sodium/hydrogen exchanger family EP560_14160 PF04228 Putative neutral zinc metallopeptidase EP560_14165 PF05661 Protein of unknown function (DUF808) EP560_14170 PF00579 tRNA synthetases class I (W and Y) EP560_14175 PF00549 CoA-ligase EP560_14175 PF02629 CoA binding domain EP560_14180 PF00549 CoA-ligase EP560_14180 PF08442 ATP-grasp domain EP560_14185 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_14185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_14190 PF02817 e3 binding domain EP560_14190 PF00364 Biotin-requiring enzyme EP560_14190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP560_14195 PF16870 2-oxoglutarate dehydrogenase C-terminal EP560_14195 PF02779 Transketolase, pyrimidine binding domain EP560_14195 PF00676 Dehydrogenase E1 component EP560_14195 PF16078 2-oxoglutarate dehydrogenase N-terminus EP560_14210 PF13085 2Fe-2S iron-sulfur cluster binding domain EP560_14215 PF00890 FAD binding domain EP560_14215 PF02910 Fumarate reductase flavoprotein C-term EP560_14220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP560_14225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP560_14230 PF00285 Citrate synthase, C-terminal domain EP560_14260 PF04545 Sigma-70, region 4 EP560_14260 PF04539 Sigma-70 region 3 EP560_14260 PF04542 Sigma-70 region 2 EP560_14260 PF00140 Sigma-70 factor, region 1.2 EP560_14260 PF03979 Sigma-70 factor, region 1.1 EP560_14260 PF04546 Sigma-70, non-essential region EP560_14265 PF04359 Protein of unknown function (DUF493) EP560_14270 PF03099 Biotin/lipoate A/B protein ligase family EP560_14280 PF00465 Iron-containing alcohol dehydrogenase EP560_14285 PF13520 Amino acid permease EP560_14290 PF03358 NADPH-dependent FMN reductase EP560_14295 PF01638 HxlR-like helix-turn-helix EP560_14300 PF00588 SpoU rRNA Methylase family EP560_14305 PF10414 Sirohaem synthase dimerisation region EP560_14305 PF14824 Sirohaem biosynthesis protein central EP560_14305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP560_14310 PF02403 Seryl-tRNA synthetase N-terminal domain EP560_14310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP560_14320 PF03548 Outer membrane lipoprotein carrier protein LolA EP560_14325 PF01016 Ribosomal L27 protein EP560_14330 PF00829 Ribosomal prokaryotic L21 protein EP560_14340 PF00348 Polyprenyl synthetase EP560_14350 PF01569 PAP2 superfamily EP560_14355 PF00529 HlyD membrane-fusion protein of T1SS EP560_14355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_14360 PF00873 AcrB/AcrD/AcrF family EP560_14365 PF02321 Outer membrane efflux protein EP560_14370 PF01906 Putative heavy-metal-binding EP560_14375 PF01906 Putative heavy-metal-binding EP560_14395 PF10458 Valyl tRNA synthetase tRNA binding arm EP560_14395 PF00133 tRNA synthetases class I (I, L, M and V) EP560_14395 PF08264 Anticodon-binding domain of tRNA EP560_14415 PF03466 LysR substrate binding domain EP560_14415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_14425 PF00909 Ammonium Transporter Family EP560_14435 PF00512 His Kinase A (phospho-acceptor) domain EP560_14435 PF08521 Two-component sensor kinase N-terminal EP560_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_14440 PF00072 Response regulator receiver domain EP560_14440 PF00486 Transcriptional regulatory protein, C terminal EP560_14445 PF00884 Sulfatase EP560_14445 PF08019 Phosphoethanolamine transferase EptA/EptB EP560_14465 PF01734 Patatin-like phospholipase EP560_14475 PF01145 SPFH domain / Band 7 family EP560_14480 PF04237 YjbR EP560_14485 PF00348 Polyprenyl synthetase EP560_14490 PF04303 PrpF protein EP560_14495 PF00324 Amino acid permease EP560_14505 PF01965 DJ-1/PfpI family EP560_14510 PF00550 Phosphopantetheine attachment site EP560_14510 PF08240 Alcohol dehydrogenase GroES-like domain EP560_14510 PF08659 KR domain EP560_14510 PF14765 Polyketide synthase dehydratase EP560_14510 PF16197 Ketoacyl-synthetase C-terminal extension EP560_14510 PF08990 Erythronolide synthase docking EP560_14510 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_14510 PF00698 Acyl transferase domain EP560_14510 PF09277 Erythronolide synthase, docking EP560_14510 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_14515 PF12833 Helix-turn-helix domain EP560_14515 PF06719 AraC-type transcriptional regulator N-terminus EP560_14520 PF02673 Bacitracin resistance protein BacA EP560_14540 PF02525 Flavodoxin-like fold EP560_14555 PF01507 Phosphoadenosine phosphosulfate reductase family EP560_14560 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EP560_14560 PF06974 Protein of unknown function (DUF1298) EP560_14570 PF10150 Ribonuclease E/G family EP560_14570 PF00575 S1 RNA binding domain EP560_14575 PF02545 Maf-like protein EP560_14580 PF04093 rod shape-determining protein MreD EP560_14585 PF04085 rod shape-determining protein MreC EP560_14595 PF02686 Glu-tRNAGln amidotransferase C subunit EP560_14600 PF01425 Amidase EP560_14605 PF02637 GatB domain EP560_14605 PF02934 GatB/GatE catalytic domain EP560_14635 PF05992 SbmA/BacA-like family EP560_14640 PF00291 Pyridoxal-phosphate dependent enzyme EP560_14640 PF13291 ACT domain EP560_14645 PF01734 Patatin-like phospholipase EP560_14650 PF01235 Sodium:alanine symporter family EP560_14665 PF00881 Nitroreductase family EP560_14670 PF07690 Major Facilitator Superfamily EP560_14675 PF12805 FUSC-like inner membrane protein yccS EP560_14685 PF00175 Oxidoreductase NAD-binding domain EP560_14685 PF00258 Flavodoxin EP560_14685 PF00667 FAD binding domain EP560_14700 PF03734 L,D-transpeptidase catalytic domain EP560_14700 PF17969 L,D-transpeptidase C-terminal domain EP560_14705 PF04304 Protein of unknown function (DUF454) EP560_14715 PF08085 Entericidin EcnA/B family EP560_14720 PF01546 Peptidase family M20/M25/M40 EP560_14720 PF07687 Peptidase dimerisation domain EP560_14735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP560_14735 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EP560_14740 PF01584 CheW-like domain EP560_14745 PF00072 Response regulator receiver domain EP560_14750 PF00072 Response regulator receiver domain EP560_14765 PF00873 AcrB/AcrD/AcrF family EP560_14770 PF03129 Anticodon binding domain EP560_14770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP560_14770 PF04073 Aminoacyl-tRNA editing domain EP560_14775 PF07411 Domain of unknown function (DUF1508) EP560_14780 PF08274 PhnA Zinc-Ribbon EP560_14780 PF03831 PhnA domain EP560_14785 PF04343 Protein of unknown function, DUF488 EP560_14795 PF01571 Aminomethyltransferase folate-binding domain EP560_14800 PF10411 Disulfide bond isomerase protein N-terminus EP560_14800 PF13098 Thioredoxin-like domain EP560_14810 PF03547 Membrane transport protein EP560_14815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_14825 PF02245 Methylpurine-DNA glycosylase (MPG) EP560_14830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EP560_14830 PF06827 Zinc finger found in FPG and IleRS EP560_14830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EP560_14845 PF01741 Large-conductance mechanosensitive channel, MscL EP560_14855 PF00860 Permease family EP560_14860 PF05175 Methyltransferase small domain EP560_14860 PF08468 Methyltransferase small domain N-terminal EP560_14865 PF00324 Amino acid permease EP560_14870 PF01139 tRNA-splicing ligase RtcB EP560_14875 PF13505 Outer membrane protein beta-barrel domain EP560_14875 PF00691 OmpA family EP560_14885 PF02803 Thiolase, C-terminal domain EP560_14885 PF00108 Thiolase, N-terminal domain EP560_14895 PF00893 Small Multidrug Resistance protein EP560_14905 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP560_14905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP560_14910 PF01011 PQQ enzyme repeat EP560_14915 PF04966 Carbohydrate-selective porin, OprB family EP560_14920 PF02515 CoA-transferase family III EP560_14925 PF02311 AraC-like ligand binding domain EP560_14925 PF12833 Helix-turn-helix domain EP560_14930 PF02803 Thiolase, C-terminal domain EP560_14930 PF00108 Thiolase, N-terminal domain EP560_14935 PF00378 Enoyl-CoA hydratase/isomerase EP560_14935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_14935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_14960 PF03006 Haemolysin-III related EP560_14965 PF00083 Sugar (and other) transporter EP560_14965 PF07690 Major Facilitator Superfamily EP560_14975 PF07516 SecA Wing and Scaffold domain EP560_14975 PF07517 SecA DEAD-like domain EP560_14975 PF02810 SEC-C motif EP560_14975 PF01043 SecA preprotein cross-linking domain EP560_14980 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP560_14980 PF00578 AhpC/TSA family EP560_14985 PF00753 Metallo-beta-lactamase superfamily EP560_15000 PF02875 Mur ligase family, glutamate ligase domain EP560_15000 PF08245 Mur ligase middle domain EP560_15005 PF01039 Carboxyl transferase domain EP560_15010 PF00290 Tryptophan synthase alpha chain EP560_15035 PF00291 Pyridoxal-phosphate dependent enzyme EP560_15040 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EP560_15045 PF07715 TonB-dependent Receptor Plug Domain EP560_15045 PF00593 TonB dependent receptor EP560_15050 PF01923 Cobalamin adenosyltransferase EP560_15055 PF03009 Glycerophosphoryl diester phosphodiesterase family EP560_15070 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EP560_15075 PF00486 Transcriptional regulatory protein, C terminal EP560_15075 PF00072 Response regulator receiver domain EP560_15080 PF00512 His Kinase A (phospho-acceptor) domain EP560_15080 PF00672 HAMP domain EP560_15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_15090 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_15090 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_15090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_15090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_15095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_15095 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_15095 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_15095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_15100 PF06146 Phosphate-starvation-inducible E EP560_15120 PF00593 TonB dependent receptor EP560_15120 PF07715 TonB-dependent Receptor Plug Domain EP560_15130 PF01336 OB-fold nucleic acid binding domain EP560_15130 PF00152 tRNA synthetases class II (D, K and N) EP560_15130 PF02938 GAD domain EP560_15145 PF13737 Transposase DDE domain EP560_15160 PF13936 Helix-turn-helix domain EP560_15160 PF00665 Integrase core domain EP560_15180 PF00534 Glycosyl transferases group 1 EP560_15180 PF13439 Glycosyltransferase Family 4 EP560_15185 PF00535 Glycosyl transferase family 2 EP560_15190 PF01522 Polysaccharide deacetylase EP560_15205 PF01063 Amino-transferase class IV EP560_15210 PF08335 GlnD PII-uridylyltransferase EP560_15210 PF03710 Glutamate-ammonia ligase adenylyltransferase EP560_15215 PF00512 His Kinase A (phospho-acceptor) domain EP560_15215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_15215 PF07689 KaiB domain EP560_15225 PF02547 Queuosine biosynthesis protein EP560_15240 PF01702 Queuine tRNA-ribosyltransferase EP560_15245 PF02699 Preprotein translocase subunit EP560_15250 PF07549 SecD/SecF GG Motif EP560_15250 PF13721 SecD export protein N-terminal TM region EP560_15250 PF02355 Protein export membrane protein EP560_15255 PF07549 SecD/SecF GG Motif EP560_15255 PF02355 Protein export membrane protein EP560_15260 PF02441 Flavoprotein EP560_15260 PF04127 DNA / pantothenate metabolism flavoprotein EP560_15265 PF04002 RadC-like JAB domain EP560_15270 PF01062 Bestrophin, RFP-TM, chloride channel EP560_15275 PF02811 PHP domain EP560_15280 PF04279 Intracellular septation protein A EP560_15285 PF03795 YCII-related domain EP560_15295 PF01266 FAD dependent oxidoreductase EP560_15295 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP560_15305 PF04461 Protein of unknown function (DUF520) EP560_15315 PF03061 Thioesterase superfamily EP560_15320 PF00085 Thioredoxin EP560_15325 PF00561 alpha/beta hydrolase fold EP560_15330 PF04273 Putative phosphatase (DUF442) EP560_15330 PF00753 Metallo-beta-lactamase superfamily EP560_15340 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_15340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_15375 PF17152 Periplasmic sensor domain EP560_15375 PF00990 Diguanylate cyclase, GGDEF domain EP560_15385 PF00691 OmpA family EP560_15385 PF01389 OmpA-like transmembrane domain EP560_15390 PF00149 Calcineurin-like phosphoesterase EP560_15390 PF10518 TAT (twin-arginine translocation) pathway signal sequence EP560_15395 PF13091 PLD-like domain EP560_15405 PF16360 GTP-binding GTPase Middle Region EP560_15405 PF01926 50S ribosome-binding GTPase EP560_15405 PF13167 GTP-binding GTPase N-terminal EP560_15425 PF00149 Calcineurin-like phosphoesterase EP560_15430 PF00398 Ribosomal RNA adenine dimethylase EP560_15435 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EP560_15440 PF00572 Ribosomal protein L13 EP560_15445 PF00380 Ribosomal protein S9/S16 EP560_15450 PF00043 Glutathione S-transferase, C-terminal domain EP560_15450 PF13417 Glutathione S-transferase, N-terminal domain EP560_15455 PF04386 Stringent starvation protein B EP560_15465 PF02785 Biotin carboxylase C-terminal domain EP560_15465 PF00289 Biotin carboxylase, N-terminal domain EP560_15465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_15465 PF00364 Biotin-requiring enzyme EP560_15475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_15475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_15475 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_15480 PF01039 Carboxyl transferase domain EP560_15495 PF17932 Tetracyclin repressor-like, C-terminal domain EP560_15495 PF00440 Bacterial regulatory proteins, tetR family EP560_15500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_15500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_15500 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_15545 PF01066 CDP-alcohol phosphatidyltransferase EP560_15550 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EP560_15570 PF00056 lactate/malate dehydrogenase, NAD binding domain EP560_15570 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EP560_15580 PF10145 Phage-related minor tail protein EP560_15580 PF01551 Peptidase family M23 EP560_15580 PF01464 Transglycosylase SLT domain EP560_15585 PF00919 Uncharacterized protein family UPF0004 EP560_15585 PF01938 TRAM domain EP560_15585 PF04055 Radical SAM superfamily EP560_15590 PF02562 PhoH-like protein EP560_15595 PF02130 Uncharacterized protein family UPF0054 EP560_15620 PF03358 NADPH-dependent FMN reductase EP560_15625 PF03631 Virulence factor BrkB EP560_15630 PF00892 EamA-like transporter family EP560_15635 PF12833 Helix-turn-helix domain EP560_15640 PF01557 Fumarylacetoacetate (FAA) hydrolase family EP560_15685 PF17876 Cold shock domain EP560_15685 PF00773 RNB domain EP560_15685 PF08461 Ribonuclease R winged-helix domain EP560_15685 PF00575 S1 RNA binding domain EP560_15685 PF08206 Ribonuclease B OB domain EP560_15690 PF01432 Peptidase family M3 EP560_15695 PF09526 Probable metal-binding protein (DUF2387) EP560_15725 PF03937 Flavinator of succinate dehydrogenase EP560_15730 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_15730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_15730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_15735 PF00743 Flavin-binding monooxygenase-like EP560_15740 PF01196 Ribosomal protein L17 EP560_15745 PF01000 RNA polymerase Rpb3/RpoA insert domain EP560_15745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EP560_15745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EP560_15750 PF01479 S4 domain EP560_15750 PF00163 Ribosomal protein S4/S9 N-terminal domain EP560_15755 PF00411 Ribosomal protein S11 EP560_15760 PF00416 Ribosomal protein S13/S18 EP560_15765 PF00444 Ribosomal protein L36 EP560_15770 PF00344 SecY translocase EP560_15775 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EP560_15780 PF00327 Ribosomal protein L30p/L7e EP560_15785 PF00333 Ribosomal protein S5, N-terminal domain EP560_15785 PF03719 Ribosomal protein S5, C-terminal domain EP560_15790 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EP560_15795 PF00347 Ribosomal protein L6 EP560_15800 PF00410 Ribosomal protein S8 EP560_15805 PF00253 Ribosomal protein S14p/S29e EP560_15810 PF00673 ribosomal L5P family C-terminus EP560_15810 PF00281 Ribosomal protein L5 EP560_15815 PF00467 KOW motif EP560_15815 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EP560_15820 PF00238 Ribosomal protein L14p/L23e EP560_15825 PF00366 Ribosomal protein S17 EP560_15830 PF00831 Ribosomal L29 protein EP560_15835 PF00252 Ribosomal protein L16p/L10e EP560_15840 PF07650 KH domain EP560_15840 PF00189 Ribosomal protein S3, C-terminal domain EP560_15845 PF00237 Ribosomal protein L22p/L17e EP560_15850 PF00203 Ribosomal protein S19 EP560_15855 PF03947 Ribosomal Proteins L2, C-terminal domain EP560_15855 PF00181 Ribosomal Proteins L2, RNA binding domain EP560_15860 PF00276 Ribosomal protein L23 EP560_15865 PF00573 Ribosomal protein L4/L1 family EP560_15870 PF00297 Ribosomal protein L3 EP560_15875 PF00338 Ribosomal protein S10p/S20e EP560_15880 PF00117 Glutamine amidotransferase class-I EP560_15885 PF01053 Cys/Met metabolism PLP-dependent enzyme EP560_15890 PF05872 Bacterial protein of unknown function (DUF853) EP560_15895 PF00970 Oxidoreductase FAD-binding domain EP560_15895 PF00042 Globin EP560_15895 PF00175 Oxidoreductase NAD-binding domain EP560_15900 PF02082 Transcriptional regulator EP560_15905 PF01926 50S ribosome-binding GTPase EP560_15915 PF00375 Sodium:dicarboxylate symporter family EP560_15925 PF01553 Acyltransferase EP560_15940 PF00270 DEAD/DEAH box helicase EP560_15940 PF17191 RecG wedge domain EP560_15940 PF00271 Helicase conserved C-terminal domain EP560_15945 PF00156 Phosphoribosyl transferase domain EP560_15950 PF00293 NUDIX domain EP560_15955 PF03641 Possible lysine decarboxylase EP560_15960 PF01544 CorA-like Mg2+ transporter protein EP560_15970 PF05494 MlaC protein EP560_15980 PF02405 Permease MlaE EP560_15985 PF00005 ABC transporter EP560_15995 PF03880 DbpA RNA binding domain EP560_15995 PF00270 DEAD/DEAH box helicase EP560_15995 PF00271 Helicase conserved C-terminal domain EP560_15995 PF12343 Cold shock protein DEAD box A EP560_16000 PF00459 Inositol monophosphatase family EP560_16005 PF02780 Transketolase, C-terminal domain EP560_16005 PF02779 Transketolase, pyrimidine binding domain EP560_16005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EP560_16010 PF00925 GTP cyclohydrolase II EP560_16015 PF01218 Coproporphyrinogen III oxidase EP560_16020 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EP560_16020 PF01488 Shikimate / quinate 5-dehydrogenase EP560_16020 PF08501 Shikimate dehydrogenase substrate binding domain EP560_16030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_16030 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_16030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_16030 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_16040 PF04024 PspC domain EP560_16045 PF00571 CBS domain EP560_16070 PF02091 Glycyl-tRNA synthetase alpha subunit EP560_16075 PF02092 Glycyl-tRNA synthetase beta subunit EP560_16075 PF05746 DALR anticodon binding domain EP560_16090 PF00892 EamA-like transporter family EP560_16095 PF03466 LysR substrate binding domain EP560_16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_16125 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP560_16130 PF04996 Succinylarginine dihydrolase EP560_16135 PF00171 Aldehyde dehydrogenase family EP560_16140 PF04958 Arginine N-succinyltransferase beta subunit EP560_16145 PF00202 Aminotransferase class-III EP560_16150 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP560_16150 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP560_16155 PF00324 Amino acid permease EP560_16165 PF08241 Methyltransferase domain EP560_16185 PF13614 AAA domain EP560_16190 PF01594 AI-2E family transporter EP560_16195 PF00080 Copper/zinc superoxide dismutase (SODC) EP560_16215 PF07690 Major Facilitator Superfamily EP560_16225 PF02525 Flavodoxin-like fold EP560_16230 PF03992 Antibiotic biosynthesis monooxygenase EP560_16240 PF02913 FAD linked oxidases, C-terminal domain EP560_16240 PF01565 FAD binding domain EP560_16245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_16245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_16250 PF00892 EamA-like transporter family EP560_16255 PF00892 EamA-like transporter family EP560_16265 PF01925 Sulfite exporter TauE/SafE EP560_16270 PF16198 tRNA pseudouridylate synthase B C-terminal domain EP560_16270 PF01509 TruB family pseudouridylate synthase (N terminal domain) EP560_16270 PF09157 Pseudouridine synthase II TruB, C-terminal EP560_16275 PF03280 Proteobacterial lipase chaperone protein EP560_16280 PF00561 alpha/beta hydrolase fold EP560_16285 PF01245 Ribosomal protein L19 EP560_16290 PF01746 tRNA (Guanine-1)-methyltransferase EP560_16295 PF05239 PRC-barrel domain EP560_16295 PF01782 RimM N-terminal domain EP560_16300 PF00886 Ribosomal protein S16 EP560_16340 PF02401 LytB protein EP560_16345 PF00625 Guanylate kinase EP560_16350 PF01192 RNA polymerase Rpb6 EP560_16360 PF13291 ACT domain EP560_16360 PF04607 Region found in RelA / SpoT proteins EP560_16360 PF02824 TGS domain EP560_16365 PF01042 Endoribonuclease L-PSP EP560_16370 PF04324 BFD-like [2Fe-2S] binding domain EP560_16375 PF00210 Ferritin-like domain EP560_16380 PF11846 Virulence factor membrane-bound polymerase, C-terminal EP560_16380 PF04932 O-Antigen ligase EP560_16380 PF15864 Protein glycosylation ligase EP560_16385 PF00114 Pilin (bacterial filament) EP560_16385 PF07963 Prokaryotic N-terminal methylation motif EP560_16395 PF04536 TPM domain EP560_16400 PF04011 LemA family EP560_16410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EP560_16410 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_16415 PF01493 GXGXG motif EP560_16415 PF01645 Conserved region in glutamate synthase EP560_16415 PF00310 Glutamine amidotransferases class-II EP560_16415 PF04898 Glutamate synthase central domain EP560_16425 PF01761 3-dehydroquinate synthase EP560_16430 PF01202 Shikimate kinase EP560_16435 PF07660 Secretin and TonB N terminus short domain EP560_16435 PF11741 AMIN domain EP560_16435 PF00263 Bacterial type II and III secretion system protein EP560_16435 PF03958 Bacterial type II/III secretion system short domain EP560_16460 PF00905 Penicillin binding protein transpeptidase domain EP560_16460 PF00912 Transglycosylase EP560_16460 PF17092 Penicillin-binding protein OB-like domain EP560_16465 PF13847 Methyltransferase domain EP560_16475 PF00953 Glycosyl transferase family 4 EP560_16480 PF08245 Mur ligase middle domain EP560_16480 PF02875 Mur ligase family, glutamate ligase domain EP560_16480 PF01225 Mur ligase family, catalytic domain EP560_16485 PF02875 Mur ligase family, glutamate ligase domain EP560_16485 PF01225 Mur ligase family, catalytic domain EP560_16485 PF08245 Mur ligase middle domain EP560_16490 PF00905 Penicillin binding protein transpeptidase domain EP560_16490 PF03717 Penicillin-binding Protein dimerisation domain EP560_16500 PF01795 MraW methylase family EP560_16515 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP560_16530 PF00324 Amino acid permease EP560_16560 PF01545 Cation efflux family EP560_16565 PF00873 AcrB/AcrD/AcrF family EP560_16570 PF00529 HlyD membrane-fusion protein of T1SS EP560_16570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_16590 PF04191 Phospholipid methyltransferase EP560_16615 PF12848 ABC transporter EP560_16615 PF00005 ABC transporter EP560_16620 PF01053 Cys/Met metabolism PLP-dependent enzyme EP560_16625 PF00106 short chain dehydrogenase EP560_16630 PF00916 Sulfate permease family EP560_16630 PF01740 STAS domain EP560_16635 PF00575 S1 RNA binding domain EP560_16635 PF16921 Tex protein YqgF-like domain EP560_16635 PF09371 Tex-like protein N-terminal domain EP560_16635 PF17674 HHH domain EP560_16640 PF00486 Transcriptional regulatory protein, C terminal EP560_16640 PF00072 Response regulator receiver domain EP560_16645 PF00672 HAMP domain EP560_16645 PF00512 His Kinase A (phospho-acceptor) domain EP560_16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_16655 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EP560_16655 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EP560_16660 PF00583 Acetyltransferase (GNAT) family EP560_16680 PF00475 Imidazoleglycerol-phosphate dehydratase EP560_16685 PF00117 Glutamine amidotransferase class-I EP560_16700 PF00977 Histidine biosynthesis protein EP560_16715 PF03992 Antibiotic biosynthesis monooxygenase EP560_16730 PF01636 Phosphotransferase enzyme family EP560_16735 PF00977 Histidine biosynthesis protein EP560_16750 PF00230 Major intrinsic protein EP560_16775 PF02705 K+ potassium transporter EP560_16795 PF02525 Flavodoxin-like fold EP560_16805 PF01638 HxlR-like helix-turn-helix EP560_16835 PF12833 Helix-turn-helix domain EP560_16835 PF02311 AraC-like ligand binding domain EP560_16840 PF00248 Aldo/keto reductase family EP560_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_16860 PF03466 LysR substrate binding domain EP560_16865 PF07690 Major Facilitator Superfamily EP560_16905 PF01593 Flavin containing amine oxidoreductase EP560_16910 PF02678 Pirin EP560_16910 PF05726 Pirin C-terminal cupin domain EP560_16915 PF00857 Isochorismatase family EP560_16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_16925 PF00171 Aldehyde dehydrogenase family EP560_16930 PF00202 Aminotransferase class-III EP560_16935 PF00155 Aminotransferase class I and II EP560_16935 PF00392 Bacterial regulatory proteins, gntR family EP560_16940 PF00324 Amino acid permease EP560_16950 PF03591 AzlC protein EP560_16960 PF00436 Single-strand binding protein family EP560_16965 PF07690 Major Facilitator Superfamily EP560_16975 PF08543 Phosphomethylpyrimidine kinase EP560_16975 PF02581 Thiamine monophosphate synthase EP560_16975 PF03070 TENA/THI-4/PQQC family EP560_16980 PF06942 GlpM protein EP560_16995 PF16925 Tetracyclin repressor-like, C-terminal domain EP560_16995 PF00440 Bacterial regulatory proteins, tetR family EP560_17000 PF17755 UvrA DNA-binding domain EP560_17000 PF17760 UvrA interaction domain EP560_17000 PF00005 ABC transporter EP560_17010 PF17158 Membrane-associated sensor, integral membrane domain EP560_17010 PF00990 Diguanylate cyclase, GGDEF domain EP560_17020 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_17030 PF00474 Sodium:solute symporter family EP560_17035 PF04341 Protein of unknown function, DUF485 EP560_17040 PF00672 HAMP domain EP560_17040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_17040 PF00512 His Kinase A (phospho-acceptor) domain EP560_17040 PF00072 Response regulator receiver domain EP560_17040 PF01627 Hpt domain EP560_17050 PF00072 Response regulator receiver domain EP560_17050 PF00196 Bacterial regulatory proteins, luxR family EP560_17055 PF03358 NADPH-dependent FMN reductase EP560_17060 PF00296 Luciferase-like monooxygenase EP560_17065 PF01037 Lrp/AsnC ligand binding domain EP560_17070 PF00857 Isochorismatase family EP560_17075 PF16177 Acetyl-coenzyme A synthetase N-terminus EP560_17075 PF00501 AMP-binding enzyme EP560_17075 PF13193 AMP-binding enzyme C-terminal domain EP560_17085 PF00924 Mechanosensitive ion channel EP560_17090 PF04452 RNA methyltransferase EP560_17095 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EP560_17100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_17120 PF01368 DHH family EP560_17120 PF17768 RecJ OB domain EP560_17120 PF02272 DHHA1 domain EP560_17125 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EP560_17125 PF01243 Pyridoxamine 5'-phosphate oxidase EP560_17130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP560_17130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP560_17130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP560_17130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP560_17135 PF00571 CBS domain EP560_17135 PF00478 IMP dehydrogenase / GMP reductase domain EP560_17140 PF03692 Putative zinc- or iron-chelating domain EP560_17145 PF00258 Flavodoxin EP560_17145 PF01613 Flavin reductase like domain EP560_17150 PF07715 TonB-dependent Receptor Plug Domain EP560_17150 PF00593 TonB dependent receptor EP560_17155 PF01169 Uncharacterized protein family UPF0016 EP560_17165 PF00364 Biotin-requiring enzyme EP560_17165 PF02817 e3 binding domain EP560_17165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP560_17170 PF00456 Transketolase, thiamine diphosphate binding domain EP560_17170 PF17831 Pyruvate dehydrogenase E1 component middle domain EP560_17175 PF01551 Peptidase family M23 EP560_17185 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EP560_17190 PF12327 FtsZ family, C-terminal domain EP560_17190 PF00091 Tubulin/FtsZ family, GTPase domain EP560_17195 PF02491 SHS2 domain inserted in FTSA EP560_17200 PF03799 Cell division protein FtsQ EP560_17200 PF08478 POTRA domain, FtsQ-type EP560_17205 PF07478 D-ala D-ala ligase C-terminus EP560_17205 PF01820 D-ala D-ala ligase N-terminus EP560_17210 PF01225 Mur ligase family, catalytic domain EP560_17210 PF02875 Mur ligase family, glutamate ligase domain EP560_17210 PF08245 Mur ligase middle domain EP560_17215 PF03033 Glycosyltransferase family 28 N-terminal domain EP560_17215 PF04101 Glycosyltransferase family 28 C-terminal domain EP560_17220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EP560_17220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EP560_17235 PF00156 Phosphoribosyl transferase domain EP560_17240 PF03372 Endonuclease/Exonuclease/phosphatase family EP560_17245 PF03960 ArsC family EP560_17255 PF07859 alpha/beta hydrolase fold EP560_17260 PF00990 Diguanylate cyclase, GGDEF domain EP560_17260 PF07694 5TMR of 5TMR-LYT EP560_17265 PF02683 Cytochrome C biogenesis protein transmembrane region EP560_17265 PF11412 Disulphide bond corrector protein DsbC EP560_17295 PF00576 HIUase/Transthyretin family EP560_17300 PF00860 Permease family EP560_17310 PF01494 FAD binding domain EP560_17315 PF03561 Allantoicase repeat EP560_17320 PF04115 Ureidoglycolate lyase EP560_17325 PF00106 short chain dehydrogenase EP560_17330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_17330 PF01751 Toprim domain EP560_17330 PF00986 DNA gyrase B subunit, carboxyl terminus EP560_17330 PF00204 DNA gyrase B EP560_17335 PF05728 Uncharacterised protein family (UPF0227) EP560_17355 PF13817 IS66 C-terminal element EP560_17355 PF03050 Transposase IS66 family EP560_17355 PF13005 zinc-finger binding domain of transposase IS66 EP560_17355 PF13007 Transposase C of IS166 homeodomain EP560_17365 PF04650 YSIRK type signal peptide EP560_17365 PF03373 Octapeptide repeat EP560_17365 PF00746 LPXTG cell wall anchor motif EP560_17365 PF01476 LysM domain EP560_17365 PF02216 B domain EP560_17375 PF04717 Type VI secretion system, phage-baseplate injector EP560_17380 PF02600 Disulfide bond formation protein DsbB EP560_17385 PF04262 Glutamate-cysteine ligase EP560_17400 PF04286 Protein of unknown function (DUF445) EP560_17405 PF00155 Aminotransferase class I and II EP560_17410 PF01554 MatE EP560_17415 PF00106 short chain dehydrogenase EP560_17425 PF00072 Response regulator receiver domain EP560_17425 PF00486 Transcriptional regulatory protein, C terminal EP560_17430 PF00989 PAS fold EP560_17430 PF11808 Phosphate regulon sensor protein PhoR EP560_17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_17430 PF00512 His Kinase A (phospho-acceptor) domain EP560_17440 PF01547 Bacterial extracellular solute-binding protein EP560_17445 PF03069 Acetamidase/Formamidase family EP560_17450 PF02666 Phosphatidylserine decarboxylase EP560_17455 PF00581 Rhodanese-like domain EP560_17460 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP560_17460 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EP560_17470 PF00199 Catalase EP560_17470 PF06628 Catalase-related immune-responsive EP560_17475 PF02580 D-Tyr-tRNA(Tyr) deacylase EP560_17505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP560_17505 PF00925 GTP cyclohydrolase II EP560_17510 PF00885 6,7-dimethyl-8-ribityllumazine synthase EP560_17515 PF01029 NusB family EP560_17520 PF02769 AIR synthase related protein, C-terminal domain EP560_17520 PF00586 AIR synthase related protein, N-terminal domain EP560_17525 PF04608 Phosphatidylglycerophosphatase A EP560_17530 PF12804 MobA-like NTP transferase domain EP560_17530 PF14602 Hexapeptide repeat of succinyl-transferase EP560_17530 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_17535 PF01380 SIS domain EP560_17540 PF08722 TnsA endonuclease N terminal EP560_17540 PF08721 TnsA endonuclease C terminal EP560_17545 PF00665 Integrase core domain EP560_17550 PF13401 AAA domain EP560_17550 PF11426 Tn7 transposition regulator TnsC EP560_17555 PF06527 TniQ EP560_17555 PF15978 Tn7-like transposition protein D EP560_17570 PF02086 D12 class N6 adenine-specific DNA methyltransferase EP560_17580 PF01177 Asp/Glu/Hydantoin racemase EP560_17595 PF00491 Arginase family EP560_17600 PF01979 Amidohydrolase family EP560_17605 PF00324 Amino acid permease EP560_17610 PF00221 Aromatic amino acid lyase EP560_17615 PF17391 Urocanase N-terminal domain EP560_17615 PF01175 Urocanase Rossmann-like domain EP560_17615 PF17392 Urocanase C-terminal domain EP560_17620 PF05962 HutD EP560_17625 PF00392 Bacterial regulatory proteins, gntR family EP560_17625 PF07702 UTRA domain EP560_17635 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP560_17635 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP560_17645 PF00324 Amino acid permease EP560_17655 PF14497 Glutathione S-transferase, C-terminal domain EP560_17655 PF02798 Glutathione S-transferase, N-terminal domain EP560_17660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_17670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_17675 PF04463 Protein of unknown function (DUF523) EP560_17680 PF01554 MatE EP560_17685 PF01758 Sodium Bile acid symporter family EP560_17690 PF00857 Isochorismatase family EP560_17695 PF00701 Dihydrodipicolinate synthetase family EP560_17705 PF01259 SAICAR synthetase EP560_17720 PF01226 Formate/nitrite transporter EP560_17725 PF16193 AAA C-terminal domain EP560_17725 PF12002 MgsA AAA+ ATPase C terminal EP560_17725 PF00004 ATPase family associated with various cellular activities (AAA) EP560_17730 PF07995 Glucose / Sorbosone dehydrogenase EP560_17735 PF03692 Putative zinc- or iron-chelating domain EP560_17740 PF07043 Protein of unknown function (DUF1328) EP560_17745 PF02230 Phospholipase/Carboxylesterase EP560_17755 PF10576 Iron-sulfur binding domain of endonuclease III EP560_17755 PF00633 Helix-hairpin-helix motif EP560_17755 PF00730 HhH-GPD superfamily base excision DNA repair protein EP560_17755 PF14815 NUDIX domain EP560_17770 PF03352 Methyladenine glycosylase EP560_17775 PF08240 Alcohol dehydrogenase GroES-like domain EP560_17775 PF00107 Zinc-binding dehydrogenase EP560_17780 PF00155 Aminotransferase class I and II EP560_17780 PF00392 Bacterial regulatory proteins, gntR family EP560_17795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_17795 PF03466 LysR substrate binding domain EP560_17800 PF00248 Aldo/keto reductase family EP560_17805 PF07690 Major Facilitator Superfamily EP560_17815 PF05173 Dihydrodipicolinate reductase, C-terminus EP560_17815 PF01113 Dihydrodipicolinate reductase, N-terminus EP560_17825 PF00684 DnaJ central domain EP560_17825 PF01556 DnaJ C terminal domain EP560_17825 PF00226 DnaJ domain EP560_17835 PF00873 AcrB/AcrD/AcrF family EP560_17840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_17845 PF08361 MAATS-type transcriptional repressor, C-terminal region EP560_17845 PF00440 Bacterial regulatory proteins, tetR family EP560_17850 PF00311 Phosphoenolpyruvate carboxylase EP560_17855 PF00860 Permease family EP560_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_17860 PF03466 LysR substrate binding domain EP560_17875 PF00920 Dehydratase family EP560_17880 PF00551 Formyl transferase EP560_17880 PF02911 Formyl transferase, C-terminal domain EP560_17885 PF01189 16S rRNA methyltransferase RsmB/F EP560_17885 PF01029 NusB family EP560_17895 PF00209 Sodium:neurotransmitter symporter family EP560_17935 PF00440 Bacterial regulatory proteins, tetR family EP560_17960 PF01327 Polypeptide deformylase EP560_17970 PF17782 DprA winged helix domain EP560_17970 PF02481 DNA recombination-mediator protein A EP560_17975 PF01300 Telomere recombination EP560_17980 PF00892 EamA-like transporter family EP560_17985 PF00440 Bacterial regulatory proteins, tetR family EP560_17990 PF07690 Major Facilitator Superfamily EP560_18000 PF00255 Glutathione peroxidase EP560_18010 PF11008 Protein of unknown function (DUF2846) EP560_18015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EP560_18020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP560_18020 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP560_18025 PF00231 ATP synthase EP560_18030 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP560_18030 PF00306 ATP synthase alpha/beta chain, C terminal domain EP560_18030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP560_18035 PF00213 ATP synthase delta (OSCP) subunit EP560_18040 PF00430 ATP synthase B/B' CF(0) EP560_18045 PF00137 ATP synthase subunit C EP560_18050 PF00119 ATP synthase A chain EP560_18070 PF00005 ABC transporter EP560_18075 PF00950 ABC 3 transport family EP560_18080 PF01810 LysE type translocator EP560_18085 PF04261 Dyp-type peroxidase family EP560_18090 PF00390 Malic enzyme, N-terminal domain EP560_18090 PF03949 Malic enzyme, NAD binding domain EP560_18095 PF03485 Arginyl tRNA synthetase N terminal domain EP560_18095 PF05746 DALR anticodon binding domain EP560_18095 PF00750 tRNA synthetases class I (R) EP560_18115 PF02678 Pirin EP560_18115 PF05726 Pirin C-terminal cupin domain EP560_18125 PF03551 Transcriptional regulator PadR-like family EP560_18145 PF01909 Nucleotidyltransferase domain EP560_18145 PF13427 Domain of unknown function (DUF4111) EP560_18150 PF00958 GMP synthase C terminal domain EP560_18150 PF02540 NAD synthase EP560_18150 PF00117 Glutamine amidotransferase class-I EP560_18155 PF04286 Protein of unknown function (DUF445) EP560_18160 PF07681 DoxX EP560_18165 PF09335 SNARE associated Golgi protein EP560_18180 PF13614 AAA domain EP560_18190 PF01722 BolA-like protein EP560_18205 PF01648 4'-phosphopantetheinyl transferase superfamily EP560_18210 PF16363 GDP-mannose 4,6 dehydratase EP560_18230 PF16197 Ketoacyl-synthetase C-terminal extension EP560_18230 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_18230 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_18230 PF14765 Polyketide synthase dehydratase EP560_18230 PF00550 Phosphopantetheine attachment site EP560_18230 PF00975 Thioesterase domain EP560_18230 PF08242 Methyltransferase domain EP560_18235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_18235 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_18235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_18240 PF00501 AMP-binding enzyme EP560_18245 PF00196 Bacterial regulatory proteins, luxR family EP560_18245 PF03472 Autoinducer binding domain EP560_18255 PF00765 Autoinducer synthase EP560_18260 PF07690 Major Facilitator Superfamily EP560_18260 PF00083 Sugar (and other) transporter EP560_18265 PF00378 Enoyl-CoA hydratase/isomerase EP560_18270 PF00378 Enoyl-CoA hydratase/isomerase EP560_18275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_18275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_18275 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_18280 PF00501 AMP-binding enzyme EP560_18280 PF13193 AMP-binding enzyme C-terminal domain EP560_18285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP560_18285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP560_18290 PF00171 Aldehyde dehydrogenase family EP560_18300 PF00324 Amino acid permease EP560_18305 PF00324 Amino acid permease EP560_18310 PF01042 Endoribonuclease L-PSP EP560_18315 PF01168 Alanine racemase, N-terminal domain EP560_18315 PF00842 Alanine racemase, C-terminal domain EP560_18320 PF01266 FAD dependent oxidoreductase EP560_18325 PF01037 Lrp/AsnC ligand binding domain EP560_18335 PF00593 TonB dependent receptor EP560_18335 PF07715 TonB-dependent Receptor Plug Domain EP560_18350 PF00849 RNA pseudouridylate synthase EP560_18400 PF00330 Aconitase family (aconitate hydratase) EP560_18400 PF00694 Aconitase C-terminal domain EP560_18405 PF00285 Citrate synthase, C-terminal domain EP560_18415 PF00392 Bacterial regulatory proteins, gntR family EP560_18415 PF07729 FCD domain EP560_18425 PF00155 Aminotransferase class I and II EP560_18430 PF01565 FAD binding domain EP560_18430 PF09330 D-lactate dehydrogenase, membrane binding EP560_18435 PF01070 FMN-dependent dehydrogenase EP560_18440 PF07729 FCD domain EP560_18440 PF00392 Bacterial regulatory proteins, gntR family EP560_18445 PF02652 L-lactate permease EP560_18450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP560_18450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP560_18450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP560_18450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP560_18460 PF16363 GDP-mannose 4,6 dehydratase EP560_18465 PF00342 Phosphoglucose isomerase EP560_18470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP560_18470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP560_18470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP560_18475 PF00483 Nucleotidyl transferase EP560_18480 PF02397 Bacterial sugar transferase EP560_18485 PF00535 Glycosyl transferase family 2 EP560_18490 PF00534 Glycosyl transferases group 1 EP560_18505 PF13439 Glycosyltransferase Family 4 EP560_18505 PF00534 Glycosyl transferases group 1 EP560_18510 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_18510 PF12464 Maltose acetyltransferase EP560_18510 PF14602 Hexapeptide repeat of succinyl-transferase EP560_18520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP560_18525 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_18530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP560_18530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP560_18535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP560_18535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP560_18535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP560_18540 PF02563 Polysaccharide biosynthesis/export protein EP560_18540 PF10531 SLBB domain EP560_18540 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EP560_18545 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP560_18550 PF02706 Chain length determinant protein EP560_18550 PF13807 G-rich domain on putative tyrosine kinase EP560_18550 PF13614 AAA domain EP560_18555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_18555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP560_18560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_18560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP560_18565 PF03023 Lipid II flippase MurJ EP560_18570 PF01510 N-acetylmuramoyl-L-alanine amidase EP560_18575 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EP560_18575 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EP560_18585 PF04185 Phosphoesterase family EP560_18585 PF05506 Domain of unknown function (DUF756) EP560_18590 PF03725 3' exoribonuclease family, domain 2 EP560_18590 PF01138 3' exoribonuclease family, domain 1 EP560_18595 PF00487 Fatty acid desaturase EP560_18600 PF00175 Oxidoreductase NAD-binding domain EP560_18605 PF00440 Bacterial regulatory proteins, tetR family EP560_18610 PF00440 Bacterial regulatory proteins, tetR family EP560_18610 PF08360 QacR-like protein, C-terminal region EP560_18615 PF01323 DSBA-like thioredoxin domain EP560_18625 PF13419 Haloacid dehalogenase-like hydrolase EP560_18630 PF00106 short chain dehydrogenase EP560_18645 PF00696 Amino acid kinase family EP560_18645 PF00583 Acetyltransferase (GNAT) family EP560_18650 PF09084 NMT1/THI5 like EP560_18655 PF09084 NMT1/THI5 like EP560_18660 PF00296 Luciferase-like monooxygenase EP560_18665 PF00528 Binding-protein-dependent transport system inner membrane component EP560_18670 PF00005 ABC transporter EP560_18675 PF00440 Bacterial regulatory proteins, tetR family EP560_18675 PF08362 YcdC-like protein, C-terminal region EP560_18680 PF01048 Phosphorylase superfamily EP560_18690 PF06574 FAD synthetase EP560_18690 PF01687 Riboflavin kinase EP560_18695 PF06827 Zinc finger found in FPG and IleRS EP560_18695 PF00133 tRNA synthetases class I (I, L, M and V) EP560_18695 PF08264 Anticodon-binding domain of tRNA EP560_18700 PF01252 Signal peptidase (SPase) II EP560_18705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_18745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP560_18750 PF07859 alpha/beta hydrolase fold EP560_18775 PF01025 GrpE EP560_18780 PF00012 Hsp70 protein EP560_18800 PF13406 Transglycosylase SLT domain EP560_18805 PF02222 ATP-grasp domain EP560_18805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EP560_18810 PF00731 AIR carboxylase EP560_18825 PF01225 Mur ligase family, catalytic domain EP560_18825 PF08245 Mur ligase middle domain EP560_18825 PF02875 Mur ligase family, glutamate ligase domain EP560_18835 PF01569 PAP2 superfamily EP560_18840 PF03741 Integral membrane protein TerC family EP560_18850 PF03738 Glutathionylspermidine synthase preATP-grasp EP560_18855 PF00355 Rieske [2Fe-2S] domain EP560_18860 PF01979 Amidohydrolase family EP560_18865 PF00156 Phosphoribosyl transferase domain EP560_18875 PF13098 Thioredoxin-like domain EP560_18875 PF10411 Disulfide bond isomerase protein N-terminus EP560_18880 PF01545 Cation efflux family EP560_18880 PF16916 Dimerisation domain of Zinc Transporter EP560_18885 PF02583 Metal-sensitive transcriptional repressor EP560_18890 PF10396 GTP-binding protein TrmE N-terminus EP560_18890 PF12631 MnmE helical domain EP560_18890 PF01926 50S ribosome-binding GTPase EP560_18895 PF02096 60Kd inner membrane protein EP560_18895 PF14849 YidC periplasmic domain EP560_18900 PF01809 Putative membrane protein insertion efficiency factor EP560_18905 PF00825 Ribonuclease P EP560_18910 PF00468 Ribosomal protein L34 EP560_18935 PF10410 DnaB-helicase binding domain of primase EP560_18935 PF08275 DNA primase catalytic core, N-terminal domain EP560_18935 PF01807 CHC2 zinc finger EP560_18975 PF00625 Guanylate kinase EP560_19000 PF02899 Phage integrase, N-terminal SAM-like domain EP560_19000 PF00589 Phage integrase family EP560_19035 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP560_19035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP560_19035 PF14579 Helix-hairpin-helix motif EP560_19035 PF02811 PHP domain EP560_19055 PF00154 recA bacterial DNA recombination protein EP560_19100 PF13476 AAA domain EP560_19125 PF00317 Ribonucleotide reductase, all-alpha domain EP560_19125 PF03477 ATP cone domain EP560_19125 PF02867 Ribonucleotide reductase, barrel domain EP560_19130 PF00268 Ribonucleotide reductase, small chain EP560_19155 PF00692 dUTPase EP560_19255 PF00929 Exonuclease EP560_19400 PF02195 ParB-like nuclease domain EP560_19405 PF00005 ABC transporter EP560_19405 PF09383 NIL domain EP560_19515 PF00877 NlpC/P60 family EP560_19595 PF00565 Staphylococcal nuclease homologue EP560_19605 PF00905 Penicillin binding protein transpeptidase domain EP560_19615 PF00816 H-NS histone family EP560_19670 PF13614 AAA domain EP560_19675 PF02195 ParB-like nuclease domain EP560_19675 PF17762 HTH domain found in ParB protein EP560_19695 PF05816 Toxic anion resistance protein (TelA) EP560_19800 PF00226 DnaJ domain EP560_19800 PF01556 DnaJ C terminal domain EP560_19800 PF00684 DnaJ central domain EP560_19835 PF07057 DNA helicase TraI EP560_19835 PF08751 TrwC relaxase EP560_19835 PF18272 single-stranded DNA binding TraI N-terminal subdomain EP560_19835 PF18340 DNA relaxase TraI 2B/2B-like domain EP560_19870 PF13936 Helix-turn-helix domain EP560_19870 PF00665 Integrase core domain EP560_19875 PF01636 Phosphotransferase enzyme family EP560_19880 PF13936 Helix-turn-helix domain EP560_19880 PF00665 Integrase core domain EP560_19895 PF00239 Resolvase, N terminal domain EP560_19895 PF02796 Helix-turn-helix domain of resolvase EP560_19910 PF01464 Transglycosylase SLT domain EP560_19945 PF10411 Disulfide bond isomerase protein N-terminus EP560_19945 PF13098 Thioredoxin-like domain EP560_19980 PF06834 TraU protein EP560_19990 PF06986 Type-1V conjugative transfer system mating pair stabilisation EP560_20005 PF06122 Conjugative relaxosome accessory transposon protein EP560_20025 PF13438 Domain of unknown function (DUF4113) EP560_20025 PF00817 impB/mucB/samB family EP560_20025 PF11799 impB/mucB/samB family C-terminal domain EP560_20025 PF11798 IMS family HHH motif EP560_20045 PF01051 Initiator Replication protein EP560_20070 PF00593 TonB dependent receptor EP560_20070 PF07715 TonB-dependent Receptor Plug Domain EP560_20080 PF13936 Helix-turn-helix domain EP560_20080 PF00665 Integrase core domain