locus-tag	class	description
EP560_00010	COG0592	DNA-directed DNA polymerase activity
EP560_00020	COG0187	DNA topoisomerase II activity
EP560_00030	COG0586	Pfam SNARE associated Golgi protein
EP560_00035	COG0488	(ABC) transporter
EP560_00060	COG0596	Alpha beta hydrolase
EP560_00065	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
EP560_00070	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
EP560_00110	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
EP560_00120	COG0655	NAD(P)H dehydrogenase (quinone) activity
EP560_00155	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
EP560_00165	COG2814	Major facilitator Superfamily
EP560_00175	COG1253	flavin adenine dinucleotide binding
EP560_00180	COG3012	SEC-C Motif Domain Protein
EP560_00185	COG2860	membrane
EP560_00190	COG0477	Major facilitator Superfamily
EP560_00200	COG0318	PFAM AMP-dependent synthetase and ligase
EP560_00215	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
EP560_00235	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EP560_00245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EP560_00250	COG0606	chelatase, subunit chli
EP560_00290	COG0589	response to stress
EP560_00295	COG0659	secondary active sulfate transmembrane transporter activity
EP560_00350	COG0606	chelatase, subunit chli
EP560_00360	COG0347	Belongs to the P(II) protein family
EP560_00365	COG0004	ammonium transporteR
EP560_00375	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EP560_00375	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
EP560_00415	COG0795	lipopolysaccharide-transporting ATPase activity
EP560_00420	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
EP560_00425	COG0793	Belongs to the peptidase S41A family
EP560_00440	COG2197	response regulator
EP560_00450	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
EP560_00460	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EP560_00465	COG4974	Belongs to the 'phage' integrase family
EP560_00490	COG0772	Belongs to the SEDS family
EP560_00495	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
EP560_00500	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
EP560_00505	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
EP560_00530	COG0697	spore germination
EP560_00535	COG1538	Outer membrane efflux protein
EP560_00555	COG3275	phosphorelay sensor kinase activity
EP560_00565	COG0181	hydroxymethylbilane synthase activity
EP560_00610	COG1716	ATPase activity
EP560_00615	COG0546	phosphoglycolate phosphatase activity
EP560_00715	COG0596	Alpha beta hydrolase
EP560_00720	COG2056	Na+-H+ antiporter family
EP560_00735	COG0326	Molecular chaperone. Has ATPase activity
EP560_00750	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
EP560_00820	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
EP560_00825	COG2169	Transcriptional regulator
EP560_00825	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EP560_00855	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
EP560_00865	COG0497	DNA recombination
EP560_00880	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
EP560_00890	COG0237	dephospho-CoA kinase activity
EP560_00940	COG0195	Participates in both transcription termination and antitermination
EP560_00960	COG2212	antiporter activity
EP560_00970	COG0651	ATP synthesis coupled electron transport
EP560_00975	COG1006	Multisubunit Na H antiporter MnhC subunit
EP560_00980	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
EP560_00980	COG2111	Na H antiporter
EP560_00995	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
EP560_01000	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EP560_01015	COG2226	methyltransferase
EP560_01035	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
EP560_01040	COG1074	ATP-dependent DNA helicase activity
EP560_01045	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EP560_01065	COG0598	Magnesium transport protein CorA
EP560_01070	COG0789	Transcriptional regulator
EP560_01075	COG0484	heat shock protein binding
EP560_01085	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
EP560_01090	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EP560_01090	COG0475	glutathione-regulated potassium exporter activity
EP560_01095	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
EP560_01115	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EP560_01125	COG4535	Mg2 and Co2 transporter CorC
EP560_01130	COG0425	Belongs to the sulfur carrier protein TusA family
EP560_01135	COG0644	oxidoreductase
EP560_01135	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
EP560_01145	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
EP560_01160	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EP560_01165	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
EP560_01205	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
EP560_01220	COG0534	Mate efflux family protein
EP560_01230	COG0635	Involved in the biosynthesis of porphyrin-containing compound
EP560_01235	COG4221	oxidoreductase activity
EP560_01240	COG0583	DNA-binding transcription factor activity
EP560_01255	COG1530	ribonuclease E activity
EP560_01270	COG0546	phosphoglycolate phosphatase activity
EP560_01275	COG2378	regulation of single-species biofilm formation
EP560_01280	COG0625	glutathione transferase activity
EP560_01295	COG0583	DNA-binding transcription factor activity
EP560_01360	COG0473	3-isopropylmalate dehydrogenase activity
EP560_01415	COG1301	dicarboxylic acid transport
EP560_01425	COG1560	Kdo2-lipid A biosynthetic process
EP560_01430	COG1280	lysine exporter protein (LysE YggA)
EP560_01450	COG1733	regulation of RNA biosynthetic process
EP560_01475	COG0210	DNA helicase
EP560_01480	COG0724	RNA recognition motif
EP560_01500	COG4651	solute:proton antiporter activity
EP560_01500	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EP560_01505	COG0267	Belongs to the bacterial ribosomal protein bL33 family
EP560_01510	COG0227	Belongs to the bacterial ribosomal protein bL28 family
EP560_01525	COG0788	formyltetrahydrofolate deformylase activity
EP560_01625	COG2813	Specifically methylates the guanine in position
EP560_01625	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EP560_01635	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
EP560_01645	COG4774	siderophore transport
EP560_01655	COG0740	serine-type endopeptidase activity
EP560_01675	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
EP560_01675	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
EP560_01680	COG0280	phosphate acetyltransferase
EP560_01680	COG0857	belongs to the CobB CobQ family
EP560_01685	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
EP560_01695	COG0800	Aldolase
EP560_01705	COG3265	gluconokinase activity
EP560_01710	COG1012	belongs to the aldehyde dehydrogenase family
EP560_01720	COG2267	carboxylic ester hydrolase activity
EP560_01735	COG0793	Belongs to the peptidase S41A family
EP560_01770	COG1426	Protein conserved in bacteria
EP560_01810	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EP560_01815	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EP560_01825	COG0318	PFAM AMP-dependent synthetase and ligase
EP560_01840	COG2986	histidine ammonia-lyase
EP560_01880	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_01885	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
EP560_01905	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
EP560_01915	COG1162	GTPase activity
EP560_01920	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
EP560_01935	COG1538	Outer membrane efflux protein
EP560_01940	COG0577	efflux transmembrane transporter activity
EP560_01940	COG1136	(ABC) transporter
EP560_01945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EP560_01970	COG0028	Belongs to the TPP enzyme family
EP560_01975	COG0440	acetolactate synthase activity
EP560_02010	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
EP560_02025	COG0084	hydrolase, TatD family'
EP560_02040	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
EP560_02050	COG0583	DNA-binding transcription factor activity
EP560_02060	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
EP560_02065	COG2814	Major facilitator Superfamily
EP560_02090	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
EP560_02095	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
EP560_02100	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
EP560_02115	COG3622	Belongs to the hyi family
EP560_02120	COG2084	Dehydrogenase
EP560_02125	COG1024	Enoyl-CoA hydratase
EP560_02130	COG0784	Response regulator, receiver
EP560_02130	COG2205	protein histidine kinase activity
EP560_02130	COG5002	protein histidine kinase activity
EP560_02150	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EP560_02160	COG3956	TIGRFAM MazG family protein
EP560_02165	COG1555	photosystem II stabilization
EP560_02170	COG0617	tRNA 3'-terminal CCA addition
EP560_02175	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
EP560_02195	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
EP560_02200	COG3028	Belongs to the UPF0307 family
EP560_02205	COG0318	PFAM AMP-dependent synthetase and ligase
EP560_02225	COG0625	glutathione transferase activity
EP560_02230	COG1238	metal cluster binding
EP560_02245	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
EP560_02270	COG0072	phenylalanine-tRNA ligase activity
EP560_02300	COG0248	Ppx GppA phosphatase
EP560_02310	COG0037	tRNA processing
EP560_02350	COG1764	response to oxidative stress
EP560_02355	COG1846	Transcriptional regulator
EP560_02365	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
EP560_02425	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
EP560_02430	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
EP560_02435	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
EP560_02445	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
EP560_02465	COG4372	Transposase
EP560_02510	COG1214	PFAM Peptidase M22, glycoprotease
EP560_02535	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
EP560_02540	COG0561	phosphatase activity
EP560_02550	COG2132	Multicopper oxidase
EP560_02555	COG3667	copper resistance
EP560_02570	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
EP560_02575	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
EP560_02580	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
EP560_02610	COG1063	alcohol dehydrogenase
EP560_02615	COG0583	DNA-binding transcription factor activity
EP560_02620	COG1960	acyl-CoA dehydrogenase activity
EP560_02625	COG2814	Major facilitator Superfamily
EP560_02630	COG1804	L-carnitine dehydratase bile acid-inducible protein F
EP560_02640	COG1053	succinate dehydrogenase
EP560_02645	COG0583	DNA-binding transcription factor activity
EP560_02665	COG0583	DNA-binding transcription factor activity
EP560_02675	COG1473	amidohydrolase
EP560_02695	COG0583	DNA-binding transcription factor activity
EP560_02705	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
EP560_02710	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EP560_02730	COG2826	transposase and inactivated derivatives, IS30 family
EP560_02745	COG0384	phenazine biosynthesis protein PhzF
EP560_02765	COG4993	Dehydrogenase
EP560_02835	COG2205	protein histidine kinase activity
EP560_02845	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EP560_02865	COG0745	RESPONSE REGULATOR receiver
EP560_02870	COG2205	protein histidine kinase activity
EP560_02905	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
EP560_02935	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
EP560_02940	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EP560_02960	COG0583	DNA-binding transcription factor activity
EP560_02980	COG0668	transmembrane transport
EP560_02990	COG2081	HI0933 family
EP560_02995	COG2515	1-aminocyclopropane-1-carboxylate deaminase
EP560_03025	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EP560_03025	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
EP560_03035	COG0489	protein tyrosine kinase activity
EP560_03095	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
EP560_03105	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
EP560_03120	COG0730	response to heat
EP560_03130	COG1196	nuclear chromosome segregation
EP560_03150	COG2223	nitrite transmembrane transporter activity
EP560_03155	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
EP560_03160	COG1877	trehalose-phosphatase activity
EP560_03165	COG0596	Alpha beta hydrolase
EP560_03165	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EP560_03165	COG2226	methyltransferase
EP560_03180	COG4106	trans-aconitate 2-methyltransferase activity
EP560_03195	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
EP560_03200	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
EP560_03205	COG0009	L-threonylcarbamoyladenylate synthase
EP560_03210	COG3101	peptidyl-lysine hydroxylation
EP560_03215	COG1399	metal-binding, possibly nucleic acid-binding protein
EP560_03240	COG1652	LysM domain
EP560_03245	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
EP560_03245	COG0352	thiamine-phosphate diphosphorylase activity
EP560_03245	COG0351	phosphomethylpyrimidine kinase
EP560_03255	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
EP560_03285	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
EP560_03315	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
EP560_03330	COG0358	DNA primase activity
EP560_03340	COG0564	pseudouridine synthase activity
EP560_03365	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
EP560_03385	COG0583	DNA-binding transcription factor activity
EP560_03390	COG0473	3-isopropylmalate dehydrogenase activity
EP560_03410	COG1012	belongs to the aldehyde dehydrogenase family
EP560_03430	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
EP560_03430	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
EP560_03490	COG0456	acetyltransferase
EP560_03500	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
EP560_03505	COG0492	ferredoxin-NADP+ reductase activity
EP560_03510	COG1674	ftsk spoiiie
EP560_03510	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
EP560_03515	COG4372	Transposase
EP560_03530	COG1280	lysine exporter protein (LysE YggA)
EP560_03550	COG2894	cell division
EP560_03565	COG0204	Acyl-transferase
EP560_03570	COG2885	chlorophyll binding
EP560_03575	COG0210	DNA helicase
EP560_03585	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
EP560_03600	COG0121	glutamine amidotransferase
EP560_03625	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
EP560_03630	COG0735	belongs to the Fur family
EP560_03655	COG0420	3'-5' exonuclease activity
EP560_03675	COG1090	epimerase
EP560_03690	COG2050	protein possibly involved in aromatic compounds catabolism
EP560_03700	COG2814	Major facilitator Superfamily
EP560_03705	COG0405	Gamma-glutamyltransferase
EP560_03755	COG0477	Major facilitator Superfamily
EP560_03760	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EP560_03770	COG1595	DNA-templated transcription, initiation
EP560_03830	COG0531	amino acid
EP560_03835	COG2040	homocysteine
EP560_03860	COG1309	transcriptional regulator
EP560_03865	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EP560_03870	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EP560_03880	COG1607	acyl-coa hydrolase
EP560_03890	COG0523	cobalamin synthesis protein
EP560_03900	COG4681	YaeQ
EP560_03910	COG0726	polysaccharide deacetylase
EP560_03910	COG1649	PFAM Uncharacterised BCR, COG1649
EP560_03915	COG1215	transferase activity, transferring glycosyl groups
EP560_03925	COG1024	Enoyl-CoA hydratase
EP560_03940	COG1414	Transcriptional regulator
EP560_03960	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_03970	COG0446	pyridine nucleotide-disulphide oxidoreductase
EP560_03975	COG2271	Major facilitator Superfamily
EP560_03985	COG2267	carboxylic ester hydrolase activity
EP560_03990	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_04005	COG0028	Belongs to the TPP enzyme family
EP560_04015	COG0477	Major facilitator Superfamily
EP560_04020	COG0242	peptide deformylase activity
EP560_04025	COG2066	Belongs to the glutaminase family
EP560_04030	COG2207	Transcriptional regulator
EP560_04035	COG2223	nitrite transmembrane transporter activity
EP560_04055	COG0583	DNA-binding transcription factor activity
EP560_04060	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_04065	COG2271	Major facilitator Superfamily
EP560_04070	COG3959	Transketolase, thiamine diphosphate binding domain
EP560_04075	COG3958	Transketolase
EP560_04085	COG0306	phosphate transporter
EP560_04105	COG1262	PFAM Formylglycine-generating sulfatase enzyme
EP560_04150	COG4181	ATPase activity
EP560_04155	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
EP560_04185	COG0583	DNA-binding transcription factor activity
EP560_04195	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EP560_04200	COG1773	rubredoxin
EP560_04250	COG2851	Citrate transporter
EP560_04260	COG1253	flavin adenine dinucleotide binding
EP560_04310	COG0830	nickel cation binding
EP560_04325	COG0742	ribosomal rna small subunit methyltransferase
EP560_04330	COG0768	penicillin binding
EP560_04355	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
EP560_04360	COG2878	Part of a membrane complex involved in electron transport
EP560_04365	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
EP560_04375	COG3384	dioxygenase
EP560_04400	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
EP560_04590	COG5410	chromosome segregation
EP560_04785	COG0582	viral genome integration into host DNA
EP560_04795	COG3104	oligopeptide transport
EP560_04810	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
EP560_04845	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
EP560_04850	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
EP560_04855	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EP560_04880	COG1385	rRNA (uridine-N3-)-methyltransferase activity
EP560_04885	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
EP560_04890	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
EP560_04905	COG1960	acyl-CoA dehydrogenase activity
EP560_04910	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
EP560_04915	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EP560_04925	COG2223	nitrite transmembrane transporter activity
EP560_04935	COG0024	Methionine aminopeptidase
EP560_04940	COG0052	Belongs to the universal ribosomal protein uS2 family
EP560_04955	COG2207	Transcriptional regulator
EP560_04980	COG2951	lytic endotransglycosylase activity
EP560_04985	COG0772	Belongs to the SEDS family
EP560_05000	COG0842	Transport permease protein
EP560_05005	COG1131	(ABC) transporter
EP560_05040	COG1538	Outer membrane efflux protein
EP560_05050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EP560_05065	COG4215	(ABC) transporter
EP560_05070	COG4160	amino acid transport
EP560_05075	COG4598	ABC transporter
EP560_05085	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
EP560_05095	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EP560_05110	COG1720	tRNA m6t6A37 methyltransferase activity
EP560_05130	COG0745	RESPONSE REGULATOR receiver
EP560_05135	COG0642	Histidine kinase
EP560_05145	COG0494	nUDIX hydrolase
EP560_05155	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
EP560_05160	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
EP560_05165	COG3139	Protein of unknown function (DUF1315)
EP560_05170	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
EP560_05180	COG1301	dicarboxylic acid transport
EP560_05185	COG1960	acyl-CoA dehydrogenase activity
EP560_05190	COG2819	hydrolase of the alpha beta superfamily
EP560_05200	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
EP560_05210	COG2195	Cleaves the N-terminal amino acid of tripeptides
EP560_05215	COG1234	tRNA 3'-trailer cleavage
EP560_05245	COG2363	Small membrane protein
EP560_05265	COG0513	Belongs to the DEAD box helicase family
EP560_05275	COG0778	Nitroreductase
EP560_05305	COG1286	toxin biosynthetic process
EP560_05330	COG4783	chaperone-mediated protein folding
EP560_05335	COG1610	YqeY-like protein
EP560_05340	COG0828	Belongs to the bacterial ribosomal protein bS21 family
EP560_05435	COG3111	PFAM Bacterial OB fold (BOF) protein
EP560_05460	COG3243	poly(R)-hydroxyalkanoic acid synthase
EP560_05465	COG0786	glutamate:sodium symporter activity
EP560_05475	COG2186	Transcriptional regulator
EP560_05525	COG0477	Major facilitator Superfamily
EP560_05555	COG2985	domain, Protein
EP560_05565	COG2995	paraquat-inducible protein a
EP560_05570	COG3008	intermembrane lipid transfer
EP560_05570	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
EP560_05580	COG1794	racemase activity, acting on amino acids and derivatives
EP560_05610	COG1301	dicarboxylic acid transport
EP560_05620	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EP560_05625	COG2011	ABC-type metal ion transport system permease component
EP560_05630	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
EP560_05635	COG1464	Belongs to the NlpA lipoprotein family
EP560_05640	COG0151	Belongs to the GarS family
EP560_05645	COG0138	bifunctional purine biosynthesis protein purh
EP560_05650	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
EP560_05680	COG2308	Evidence 4 Homologs of previously reported genes of
EP560_05690	COG1305	Transglutaminase-like
EP560_05700	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
EP560_05705	COG0305	Participates in initiation and elongation during chromosome replication
EP560_05730	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
EP560_05740	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EP560_05745	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
EP560_05770	COG0726	polysaccharide deacetylase
EP560_05770	COG1649	PFAM Uncharacterised BCR, COG1649
EP560_05775	COG1215	transferase activity, transferring glycosyl groups
EP560_05780	COG3658	cytochrome
EP560_05790	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EP560_05810	COG0583	DNA-binding transcription factor activity
EP560_05830	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EP560_05835	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EP560_05850	COG1960	acyl-CoA dehydrogenase activity
EP560_05855	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EP560_05860	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EP560_05885	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
EP560_05890	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
EP560_05905	COG0745	RESPONSE REGULATOR receiver
EP560_05910	COG0174	glutamine synthetase
EP560_05930	COG0729	surface antigen
EP560_05960	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EP560_05965	COG2814	Major facilitator Superfamily
EP560_05980	COG0583	DNA-binding transcription factor activity
EP560_05995	COG1187	pseudouridine synthase activity
EP560_06015	COG0802	atpase or kinase
EP560_06020	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
EP560_06030	COG1923	regulation of RNA biosynthetic process
EP560_06035	COG0697	spore germination
EP560_06050	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
EP560_06075	COG0519	Catalyzes the synthesis of GMP from XMP
EP560_06075	COG0518	GMP synthase (glutamine-hydrolyzing) activity
EP560_06080	COG4302	ethanolamine ammonia-lyase activity
EP560_06085	COG4303	Ethanolamine ammonia lyase large subunit
EP560_06090	COG0531	amino acid
EP560_06110	COG1454	alcohol dehydrogenase
EP560_06115	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
EP560_06125	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
EP560_06145	COG0308	aminopeptidase N
EP560_06155	COG4221	oxidoreductase activity
EP560_06165	COG1605	Chorismate mutase
EP560_06185	COG1309	transcriptional regulator
EP560_06195	COG0668	transmembrane transport
EP560_06230	COG4773	Receptor
EP560_06250	COG0488	(ABC) transporter
EP560_06255	COG0589	response to stress
EP560_06270	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
EP560_06280	COG3135	benzoate transporter
EP560_06285	COG1522	sequence-specific DNA binding
EP560_06300	COG0583	DNA-binding transcription factor activity
EP560_06310	COG0183	Belongs to the thiolase family
EP560_06340	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
EP560_06350	COG0824	Thioesterase
EP560_06355	COG1454	alcohol dehydrogenase
EP560_06365	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
EP560_06385	COG0069	glutamate synthase activity
EP560_06520	COG2826	transposase and inactivated derivatives, IS30 family
EP560_06540	COG5410	chromosome segregation
EP560_06580	COG4372	Transposase
EP560_06660	COG1598	PFAM Uncharacterised protein family UPF0150
EP560_06675	COG2194	sulfuric ester hydrolase activity
EP560_06685	COG2814	Major facilitator Superfamily
EP560_06700	COG0511	ligase activity, forming carbon-carbon bonds
EP560_06720	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EP560_06720	COG1116	anion transmembrane transporter activity
EP560_06725	COG0745	RESPONSE REGULATOR receiver
EP560_06735	COG2146	nitrite reductase [NAD(P)H] activity
EP560_06735	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EP560_06740	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EP560_06745	COG0243	molybdopterin cofactor binding
EP560_06755	COG0243	molybdopterin cofactor binding
EP560_06760	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
EP560_06775	COG0315	cyclic pyranopterin monophosphate synthase activity
EP560_06775	COG0521	Mo-molybdopterin cofactor biosynthetic process
EP560_06780	COG0303	'Molybdopterin
EP560_06790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EP560_06795	COG0697	spore germination
EP560_06815	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
EP560_06820	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
EP560_06880	COG2204	response regulator
EP560_06885	COG3852	Histidine kinase
EP560_06910	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
EP560_06915	COG0575	Belongs to the CDS family
EP560_06950	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
EP560_06965	COG2137	regulation of response to DNA damage stimulus
EP560_06975	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
EP560_06980	COG1011	Hydrolase
EP560_07005	COG1522	sequence-specific DNA binding
EP560_07015	COG1113	amino acid transport
EP560_07030	COG0659	secondary active sulfate transmembrane transporter activity
EP560_07035	COG2135	peptidase activity
EP560_07050	COG3300	MHYT domain
EP560_07050	COG5001	Diguanylate cyclase
EP560_07070	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EP560_07070	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
EP560_07070	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
EP560_07075	COG1105	Belongs to the carbohydrate kinase PfkB family
EP560_07080	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
EP560_07080	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
EP560_07110	COG0024	Methionine aminopeptidase
EP560_07115	COG0583	DNA-binding transcription factor activity
EP560_07125	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
EP560_07130	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EP560_07135	COG0516	GMP reductase activity
EP560_07135	COG0517	IMP dehydrogenase activity
EP560_07160	COG0552	protein localization to endoplasmic reticulum
EP560_07170	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
EP560_07185	COG4890	Cyd operon protein YbgT
EP560_07190	COG1294	oxidase, subunit
EP560_07210	COG2826	transposase and inactivated derivatives, IS30 family
EP560_07215	COG1585	Membrane protein implicated in regulation of membrane protease activity
EP560_07225	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
EP560_07230	COG4774	siderophore transport
EP560_07245	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
EP560_07250	COG0569	domain protein
EP560_07255	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EP560_07285	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
EP560_07290	COG0542	response to heat
EP560_07300	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
EP560_07315	COG0446	pyridine nucleotide-disulphide oxidoreductase
EP560_07315	COG1902	pentaerythritol trinitrate reductase activity
EP560_07360	COG2323	membrane
EP560_07365	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
EP560_07375	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
EP560_07380	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
EP560_07385	COG0183	Belongs to the thiolase family
EP560_07390	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
EP560_07395	COG0596	Alpha beta hydrolase
EP560_07400	COG2271	Major facilitator Superfamily
EP560_07405	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
EP560_07410	COG3485	protocatechuate 3,4-dioxygenase
EP560_07415	COG3485	protocatechuate 3,4-dioxygenase
EP560_07420	COG0710	3-dehydroquinate dehydratase activity
EP560_07425	COG3420	alginic acid biosynthetic process
EP560_07430	COG3659	wide pore channel activity
EP560_07435	COG4993	Dehydrogenase
EP560_07445	COG2391	methyltransferase activity
EP560_07460	COG1414	Transcriptional regulator
EP560_07465	COG0583	DNA-binding transcription factor activity
EP560_07470	COG1960	acyl-CoA dehydrogenase activity
EP560_07495	COG2814	Major facilitator Superfamily
EP560_07505	COG0154	amidase activity
EP560_07525	COG4638	Rieske (2fe-2S)
EP560_07535	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_07545	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EP560_07555	COG3733	amine oxidase
EP560_07565	COG1012	belongs to the aldehyde dehydrogenase family
EP560_07575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
EP560_07580	COG0183	Belongs to the thiolase family
EP560_07585	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
EP560_07590	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
EP560_07600	COG4829	muconolactone delta-isomerase
EP560_07605	COG4948	Mandelate Racemase Muconate Lactonizing
EP560_07610	COG0583	DNA-binding transcription factor activity
EP560_07620	COG2186	Transcriptional regulator
EP560_07640	COG1012	belongs to the aldehyde dehydrogenase family
EP560_07660	COG1960	acyl-CoA dehydrogenase activity
EP560_07665	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_07670	COG3829	transcription factor binding
EP560_07680	COG3162	membrane
EP560_07695	COG1012	belongs to the aldehyde dehydrogenase family
EP560_07710	COG0753	catalase activity
EP560_07735	COG1846	Transcriptional regulator
EP560_07740	COG1902	pentaerythritol trinitrate reductase activity
EP560_07740	COG0446	pyridine nucleotide-disulphide oxidoreductase
EP560_07750	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
EP560_07780	COG1309	transcriptional regulator
EP560_07800	COG1335	isochorismatase
EP560_07805	COG0583	DNA-binding transcription factor activity
EP560_07815	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
EP560_07815	COG0475	glutathione-regulated potassium exporter activity
EP560_07825	COG1473	amidohydrolase
EP560_07840	COG2831	hemolysin activation secretion protein
EP560_07845	COG3210	domain, Protein
EP560_07890	COG0583	DNA-binding transcription factor activity
EP560_07915	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EP560_07920	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
EP560_07940	COG1566	PFAM secretion protein HlyD family protein
EP560_07955	COG1012	belongs to the aldehyde dehydrogenase family
EP560_07960	COG0129	dihydroxy-acid dehydratase activity
EP560_07970	COG0583	DNA-binding transcription factor activity
EP560_07975	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
EP560_07985	COG2084	Dehydrogenase
EP560_07990	COG2207	Transcriptional regulator
EP560_08005	COG1064	alcohol dehydrogenase
EP560_08020	COG1120	ATPase activity
EP560_08040	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
EP560_08160	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
EP560_08215	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_08230	COG2207	Transcriptional regulator
EP560_08245	COG0745	RESPONSE REGULATOR receiver
EP560_08250	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EP560_08255	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EP560_08260	COG1538	Outer membrane efflux protein
EP560_08270	COG2072	flavoprotein involved in K transport
EP560_08290	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EP560_08310	COG3539	Fimbrial protein
EP560_08335	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
EP560_08345	COG0753	catalase activity
EP560_08350	COG2826	transposase and inactivated derivatives, IS30 family
EP560_08365	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EP560_08440	COG3433	isochorismatase activity
EP560_08440	COG1535	isochorismatase
EP560_08445	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_08450	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
EP560_08455	COG4149	molybdate abc transporter
EP560_08460	COG0725	ABC transporter, periplasmic molybdate-binding protein
EP560_08470	COG4638	Rieske (2fe-2S)
EP560_08475	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
EP560_08480	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EP560_08480	COG0543	2 iron, 2 sulfur cluster binding
EP560_08495	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EP560_08505	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_08510	COG0412	Dienelactone hydrolase
EP560_08520	COG2207	Transcriptional regulator
EP560_08525	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_08530	COG2610	gluconate transmembrane transporter activity
EP560_08540	COG0583	DNA-binding transcription factor activity
EP560_08550	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
EP560_08555	COG2031	fatty acid transporter
EP560_08560	COG0183	Belongs to the thiolase family
EP560_08565	COG0583	DNA-binding transcription factor activity
EP560_08570	COG0583	DNA-binding transcription factor activity
EP560_08585	COG1027	Aspartate ammonia-lyase
EP560_08595	COG0477	Major facilitator Superfamily
EP560_08615	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EP560_08620	COG4521	taurine ABC transporter
EP560_08645	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
EP560_08650	COG1733	regulation of RNA biosynthetic process
EP560_08655	COG2207	Transcriptional regulator
EP560_08655	COG3708	Transcriptional regulator
EP560_08670	COG0730	response to heat
EP560_08680	COG3453	Protein conserved in bacteria
EP560_08680	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EP560_08690	COG3781	membrane
EP560_08695	COG1063	alcohol dehydrogenase
EP560_08705	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EP560_08710	COG0508	dehydrogenase complex catalyzes the overall conversion of
EP560_08715	COG0022	dehydrogenase e1 component
EP560_08720	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
EP560_08725	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
EP560_08755	COG0133	tryptophan synthase activity
EP560_08765	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
EP560_08800	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
EP560_08825	COG2226	methyltransferase
EP560_08880	COG0842	Transport permease protein
EP560_08885	COG0842	Transport permease protein
EP560_08890	COG1131	(ABC) transporter
EP560_08915	COG4372	Transposase
EP560_08925	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
EP560_08930	COG4773	Receptor
EP560_08950	COG0730	response to heat
EP560_08955	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
EP560_08975	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
EP560_09035	COG4264	IucA IucC family
EP560_09040	COG4264	IucA IucC family
EP560_09060	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
EP560_09075	COG1960	acyl-CoA dehydrogenase activity
EP560_09080	COG1960	acyl-CoA dehydrogenase activity
EP560_09085	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EP560_09090	COG2207	Transcriptional regulator
EP560_09095	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EP560_09100	COG0776	regulation of translation
EP560_09125	COG0822	iron-sulfur transferase activity
EP560_09130	COG0316	Belongs to the HesB IscA family
EP560_09160	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
EP560_09180	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
EP560_09185	COG0702	epimerase
EP560_09220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
EP560_09230	COG0339	signal peptide processing
EP560_09280	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
EP560_09335	COG0739	heme binding
EP560_09335	COG1196	nuclear chromosome segregation
EP560_09335	COG0741	lytic transglycosylase activity
EP560_09390	COG4695	Portal protein
EP560_09465	COG0305	Participates in initiation and elongation during chromosome replication
EP560_09535	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
EP560_09565	COG0776	regulation of translation
EP560_09585	COG0590	tRNA wobble adenosine to inosine editing
EP560_09615	COG2165	general secretion pathway protein
EP560_09630	COG0084	hydrolase, TatD family'
EP560_09650	COG1663	tetraacyldisaccharide 4'-kinase activity
EP560_09655	COG1132	(ABC) transporter
EP560_09665	COG0811	peptide transport
EP560_09670	COG1475	DNA binding
EP560_09675	COG1192	Involved in chromosome partitioning
EP560_09685	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
EP560_09700	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
EP560_09705	COG0191	fructose-bisphosphate aldolase activity
EP560_09725	COG0424	maF-like protein
EP560_09730	COG2850	peptidyl-arginine hydroxylation
EP560_09740	COG0640	Transcriptional regulator
EP560_09750	COG3619	membrane
EP560_09755	COG3122	Protein conserved in bacteria
EP560_09760	COG1132	(ABC) transporter
EP560_09780	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
EP560_09785	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EP560_09795	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
EP560_09795	COG0506	proline dehydrogenase activity
EP560_09795	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
EP560_09800	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
EP560_09815	COG3698	Phosphodiester glycosidase
EP560_09825	COG2353	YceI-like domain
EP560_09835	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
EP560_09885	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
EP560_09885	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
EP560_09910	COG3539	Fimbrial protein
EP560_09915	COG3121	Chaperone
EP560_09950	COG0697	spore germination
EP560_09960	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
EP560_09970	COG0583	DNA-binding transcription factor activity
EP560_10000	COG1309	transcriptional regulator
EP560_10015	COG1522	sequence-specific DNA binding
EP560_10025	COG1126	abc transporter atp-binding protein
EP560_10030	COG0765	amino acid transport
EP560_10035	COG0765	amino acid transport
EP560_10065	COG1464	Belongs to the NlpA lipoprotein family
EP560_10075	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
EP560_10080	COG2011	ABC-type metal ion transport system permease component
EP560_10085	COG0012	GTP binding
EP560_10110	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
EP560_10150	COG0386	Belongs to the glutathione peroxidase family
EP560_10160	COG0436	Aminotransferase
EP560_10205	COG3634	alkyl hydroperoxide reductase activity
EP560_10220	COG0583	DNA-binding transcription factor activity
EP560_10225	COG0798	PFAM Bile acid sodium symporter
EP560_10230	COG0640	Transcriptional regulator
EP560_10245	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
EP560_10255	COG0583	DNA-binding transcription factor activity
EP560_10265	COG1953	Uracil, thiamine, allantoin
EP560_10275	COG2175	clavaminate synthase activity
EP560_10280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EP560_10285	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
EP560_10290	COG4521	taurine ABC transporter
EP560_10310	COG0477	Major facilitator Superfamily
EP560_10335	COG1271	oxidase subunit
EP560_10340	COG1294	oxidase, subunit
EP560_10350	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EP560_10370	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
EP560_10390	COG3052	prosthetic group binding
EP560_10395	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
EP560_10405	COG2814	Major facilitator Superfamily
EP560_10425	COG1346	cytolysis
EP560_10435	COG0583	DNA-binding transcription factor activity
EP560_10440	COG0625	glutathione transferase activity
EP560_10445	COG0625	glutathione transferase activity
EP560_10450	COG0583	DNA-binding transcription factor activity
EP560_10465	COG1045	serine acetyltransferase
EP560_10470	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
EP560_10475	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
EP560_10485	COG1280	lysine exporter protein (LysE YggA)
EP560_10500	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EP560_10505	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EP560_10510	COG1126	abc transporter atp-binding protein
EP560_10515	COG0765	amino acid transport
EP560_10520	COG0765	amino acid transport
EP560_10540	COG0784	Response regulator, receiver
EP560_10540	COG2205	protein histidine kinase activity
EP560_10560	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
EP560_10580	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_10625	COG0583	DNA-binding transcription factor activity
EP560_10645	COG0318	PFAM AMP-dependent synthetase and ligase
EP560_10650	COG1309	transcriptional regulator
EP560_10655	COG1960	acyl-CoA dehydrogenase activity
EP560_10660	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
EP560_10665	COG1024	Enoyl-CoA hydratase
EP560_10680	COG0583	DNA-binding transcription factor activity
EP560_10695	COG1960	acyl-CoA dehydrogenase activity
EP560_10705	COG2814	Major facilitator Superfamily
EP560_10715	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
EP560_10720	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
EP560_10725	COG2814	Major facilitator Superfamily
EP560_10730	COG1960	acyl-CoA dehydrogenase activity
EP560_10735	COG1024	Enoyl-CoA hydratase
EP560_10740	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_10745	COG1250	3-hydroxyacyl-CoA dehydrogenase
EP560_10750	COG0183	Belongs to the thiolase family
EP560_10760	COG2814	Major facilitator Superfamily
EP560_10770	COG1024	Enoyl-CoA hydratase
EP560_10785	COG1960	acyl-CoA dehydrogenase activity
EP560_10790	COG2814	Major facilitator Superfamily
EP560_10795	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
EP560_10800	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
EP560_10815	COG3842	ATPase activity
EP560_10830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EP560_10835	COG1414	Transcriptional regulator
EP560_10845	COG3316	Transposase and inactivated derivatives
EP560_10900	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
EP560_10905	COG3316	Transposase and inactivated derivatives
EP560_10915	COG2207	Transcriptional regulator
EP560_10925	COG1278	Cold shock
EP560_10965	COG0556	nucleotide-excision repair
EP560_10975	COG2050	protein possibly involved in aromatic compounds catabolism
EP560_10985	COG3327	negative regulation of DNA-templated transcription, initiation
EP560_10990	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
EP560_10995	COG0183	Belongs to the thiolase family
EP560_11000	COG1250	3-hydroxyacyl-CoA dehydrogenase
EP560_11005	COG1024	Enoyl-CoA hydratase
EP560_11010	COG1024	Enoyl-CoA hydratase
EP560_11015	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EP560_11020	COG2151	metal-sulfur cluster biosynthetic enzyme
EP560_11025	COG3396	Phenylacetate-CoA oxygenase
EP560_11030	COG3460	Phenylacetate-CoA oxygenase
EP560_11035	COG3396	Phenylacetate-CoA oxygenase
EP560_11040	COG1012	belongs to the aldehyde dehydrogenase family
EP560_11040	COG2030	dehydratase
EP560_11045	COG1760	l-serine dehydratase
EP560_11050	COG0531	amino acid
EP560_11055	COG1012	belongs to the aldehyde dehydrogenase family
EP560_11070	COG0446	pyridine nucleotide-disulphide oxidoreductase
EP560_11080	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EP560_11100	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EP560_11115	COG0789	Transcriptional regulator
EP560_11125	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
EP560_11140	COG2807	transmembrane transport
EP560_11145	COG0590	tRNA wobble adenosine to inosine editing
EP560_11155	COG0583	DNA-binding transcription factor activity
EP560_11195	COG2885	chlorophyll binding
EP560_11195	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
EP560_11270	COG1116	anion transmembrane transporter activity
EP560_11275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
EP560_11285	COG0864	Transcriptional regulator
EP560_11305	COG2249	NAD(P)H dehydrogenase (quinone) activity
EP560_11310	COG0439	Biotin carboxylase
EP560_11335	COG1063	alcohol dehydrogenase
EP560_11345	COG1309	transcriptional regulator
EP560_11370	COG0038	chloride channel
EP560_11375	COG4770	biotin carboxylase activity
EP560_11395	COG1914	H( )-stimulated, divalent metal cation uptake system
EP560_11400	COG0583	DNA-binding transcription factor activity
EP560_11415	COG3209	COG3209 Rhs family protein
EP560_11420	COG3501	Rhs element vgr protein
EP560_11425	COG4372	Transposase
EP560_11465	COG1250	3-hydroxyacyl-CoA dehydrogenase
EP560_11485	COG2814	Major facilitator Superfamily
EP560_11500	COG1560	Kdo2-lipid A biosynthetic process
EP560_11510	COG5006	permease, DMT superfamily
EP560_11515	COG1522	sequence-specific DNA binding
EP560_11530	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
EP560_11570	COG1538	Outer membrane efflux protein
EP560_11575	COG1137	ATPase activity
EP560_11580	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
EP560_11590	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
EP560_11595	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
EP560_11595	COG0517	IMP dehydrogenase activity
EP560_11620	COG2826	transposase and inactivated derivatives, IS30 family
EP560_11630	COG2826	transposase and inactivated derivatives, IS30 family
EP560_11645	COG1733	regulation of RNA biosynthetic process
EP560_11650	COG2814	Major facilitator Superfamily
EP560_11690	COG1278	Cold shock
EP560_11695	COG1280	lysine exporter protein (LysE YggA)
EP560_11730	COG1570	exodeoxyribonuclease VII activity
EP560_11795	COG0583	DNA-binding transcription factor activity
EP560_11800	COG4638	Rieske (2fe-2S)
EP560_11805	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
EP560_11810	COG0633	Ferredoxin
EP560_11810	COG0543	2 iron, 2 sulfur cluster binding
EP560_11815	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_11820	COG3135	benzoate transporter
EP560_11825	COG2814	Major facilitator Superfamily
EP560_11840	COG1643	Atp-dependent helicase
EP560_11845	COG0450	alkyl hydroperoxide reductase
EP560_11855	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
EP560_11865	COG3634	alkyl hydroperoxide reductase activity
EP560_11885	COG0220	tRNA (guanine-N7-)-methyltransferase activity
EP560_11890	COG0625	glutathione transferase activity
EP560_11900	COG2885	chlorophyll binding
EP560_11950	COG1765	OsmC-like protein
EP560_11960	COG0667	Aldo Keto reductase
EP560_11975	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
EP560_11985	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
EP560_12005	COG3316	Transposase and inactivated derivatives
EP560_12015	COG3501	Rhs element vgr protein
EP560_12035	COG4269	membrane
EP560_12050	COG0446	pyridine nucleotide-disulphide oxidoreductase
EP560_12050	COG1902	pentaerythritol trinitrate reductase activity
EP560_12060	COG3706	GGDEF domain
EP560_12060	COG4251	negative regulation of phosphorylation
EP560_12060	COG5001	Diguanylate cyclase
EP560_12060	COG2203	Gaf domain
EP560_12070	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
EP560_12090	COG4172	Belongs to the ABC transporter superfamily
EP560_12095	COG4239	(ABC) transporter, permease
EP560_12100	COG4174	ABC transporter (Permease)
EP560_12110	COG1388	LysM domain
EP560_12110	COG1388	LysM domain
EP560_12110	COG0741	lytic transglycosylase activity
EP560_12110	COG0741	lytic transglycosylase activity
EP560_12115	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
EP560_12155	COG0583	DNA-binding transcription factor activity
EP560_12160	COG1279	arginine transmembrane transporter activity
EP560_12180	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EP560_12185	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EP560_12190	COG0006	proline dipeptidase activity
EP560_12240	COG1598	PFAM Uncharacterised protein family UPF0150
EP560_12535	COG0512	Glutamine amidotransferase of anthranilate synthase
EP560_12540	COG0308	aminopeptidase N
EP560_12570	COG1529	Aldehyde oxidase and xanthine dehydrogenase
EP560_12605	COG3739	integral membrane protein
EP560_12620	COG1169	isochorismate synthase
EP560_12630	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
EP560_12640	COG1132	(ABC) transporter
EP560_12655	COG1535	isochorismatase
EP560_12655	COG3433	isochorismatase activity
EP560_12660	COG1021	2,3-dihydroxybenzoate-AMP ligase
EP560_12665	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EP560_12685	COG4774	siderophore transport
EP560_12690	COG4607	ABC-type enterochelin transport system periplasmic component
EP560_12695	COG4604	ABC transporter, ATP-binding protein
EP560_12700	COG4605	iron ion homeostasis
EP560_12705	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
EP560_12710	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EP560_12725	COG2964	Protein conserved in bacteria
EP560_12735	COG1741	Belongs to the pirin family
EP560_12755	COG1309	transcriptional regulator
EP560_12765	COG4948	Mandelate Racemase Muconate Lactonizing
EP560_12770	COG2814	Major facilitator Superfamily
EP560_12805	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
EP560_12805	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
EP560_12810	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EP560_12825	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EP560_12830	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EP560_12835	COG0583	DNA-binding transcription factor activity
EP560_12840	COG1113	amino acid transport
EP560_12860	COG2508	Transcriptional regulator
EP560_12860	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
EP560_12895	COG2879	small protein
EP560_12900	COG1966	Carbon starvation protein
EP560_12945	COG1067	ATP-dependent peptidase activity
EP560_12950	COG0583	DNA-binding transcription factor activity
EP560_12975	COG1686	Belongs to the peptidase S11 family
EP560_12980	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
EP560_13015	COG0616	signal peptide processing
EP560_13020	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
EP560_13030	COG0573	inorganic phosphate transmembrane transporter activity
EP560_13035	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
EP560_13040	COG1113	amino acid transport
EP560_13045	COG3961	Belongs to the TPP enzyme family
EP560_13050	COG1522	sequence-specific DNA binding
EP560_13060	COG0076	glutamate decarboxylase activity
EP560_13065	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EP560_13075	COG1309	transcriptional regulator
EP560_13090	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EP560_13125	COG0352	thiamine-phosphate diphosphorylase activity
EP560_13150	COG0612	Peptidase, M16
EP560_13165	COG0583	DNA-binding transcription factor activity
EP560_13170	COG0477	Major facilitator Superfamily
EP560_13195	COG1187	pseudouridine synthase activity
EP560_13210	COG1686	Belongs to the peptidase S11 family
EP560_13215	COG1252	NADH dehydrogenase
EP560_13225	COG0415	Belongs to the DNA photolyase family
EP560_13240	COG1215	transferase activity, transferring glycosyl groups
EP560_13270	COG2070	2-Nitropropane dioxygenase
EP560_13335	COG0556	nucleotide-excision repair
EP560_13385	COG4221	oxidoreductase activity
EP560_13395	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
EP560_13400	COG1381	Involved in DNA repair and RecF pathway recombination
EP560_13410	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
EP560_13425	COG0681	Belongs to the peptidase S26 family
EP560_13440	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
EP560_13460	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
EP560_13465	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
EP560_13470	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
EP560_13480	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
EP560_13485	COG4208	sulfate ABC transporter
EP560_13490	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
EP560_13495	COG0583	DNA-binding transcription factor activity
EP560_13500	COG4625	pathogenesis
EP560_13515	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
EP560_13530	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
EP560_13540	COG1056	cytidyltransferase-related domain
EP560_13540	COG1051	belongs to the nudix hydrolase family
EP560_13545	COG1024	Enoyl-CoA hydratase
EP560_13550	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
EP560_13555	COG2814	Major facilitator Superfamily
EP560_13560	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
EP560_13560	COG0047	phosphoribosylformylglycinamidine synthase activity
EP560_13580	COG1473	amidohydrolase
EP560_13585	COG0824	Thioesterase
EP560_13605	COG0823	Involved in the tonB-independent uptake of proteins
EP560_13625	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
EP560_13670	COG0628	permease
EP560_13680	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
EP560_13685	COG0596	Alpha beta hydrolase
EP560_13690	COG0616	signal peptide processing
EP560_13690	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
EP560_13700	COG0658	competence protein
EP560_13700	COG2333	competence protein COMEC
EP560_13705	COG1136	(ABC) transporter
EP560_13710	COG4591	ABC-type transport system involved in lipoprotein release permease component
EP560_13740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EP560_13760	COG0463	Glycosyl transferase, family 2
EP560_13790	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
EP560_13795	COG1280	lysine exporter protein (LysE YggA)
EP560_13805	COG0019	diaminopimelate decarboxylase activity
EP560_13815	COG1113	amino acid transport
EP560_13830	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
EP560_13840	COG3339	Conserved Protein
EP560_13845	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
EP560_13850	COG0243	molybdopterin cofactor binding
EP560_13855	COG1929	Belongs to the glycerate kinase type-1 family
EP560_13870	COG0778	Nitroreductase
EP560_13895	COG2826	transposase and inactivated derivatives, IS30 family
EP560_13905	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EP560_13920	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
EP560_13945	COG0741	lytic transglycosylase activity
EP560_13965	COG0584	glycerophosphoryl diester phosphodiesterase
EP560_13970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EP560_13995	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
EP560_14015	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
EP560_14020	COG0477	Major facilitator Superfamily
EP560_14075	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
EP560_14080	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
EP560_14105	COG0505	Belongs to the CarA family
EP560_14125	COG0589	response to stress
EP560_14140	COG2843	Capsule synthesis protein
EP560_14160	COG2321	neutral zinc metallopeptidase
EP560_14165	COG2354	Protein conserved in bacteria
EP560_14185	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EP560_14210	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
EP560_14215	COG1053	succinate dehydrogenase
EP560_14220	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
EP560_14225	COG2009	succinate dehydrogenase
EP560_14265	COG2921	Belongs to the UPF0250 family
EP560_14270	COG0321	lipoyl(octanoyl) transferase activity
EP560_14285	COG0531	amino acid
EP560_14295	COG1733	regulation of RNA biosynthetic process
EP560_14300	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
EP560_14305	COG1648	precorrin-2 dehydrogenase activity
EP560_14305	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
EP560_14320	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
EP560_14350	COG0671	phosphoesterase, PA-phosphatase related
EP560_14355	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EP560_14365	COG1538	Outer membrane efflux protein
EP560_14370	COG0393	Putative heavy-metal-binding
EP560_14375	COG0393	Putative heavy-metal-binding
EP560_14385	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_14395	COG0525	valine-tRNA ligase activity
EP560_14415	COG0583	DNA-binding transcription factor activity
EP560_14425	COG0004	ammonium transporteR
EP560_14435	COG0642	Histidine kinase
EP560_14440	COG0745	RESPONSE REGULATOR receiver
EP560_14445	COG2194	sulfuric ester hydrolase activity
EP560_14465	COG1752	Esterase of the alpha-beta hydrolase superfamily
EP560_14480	COG2315	Protein conserved in bacteria
EP560_14485	COG0142	geranyltranstransferase activity
EP560_14490	COG2828	Protein conserved in bacteria
EP560_14495	COG1113	amino acid transport
EP560_14515	COG2207	Transcriptional regulator
EP560_14540	COG2249	NAD(P)H dehydrogenase (quinone) activity
EP560_14560	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
EP560_14570	COG1530	ribonuclease E activity
EP560_14575	COG0424	maF-like protein
EP560_14580	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
EP560_14585	COG1792	Involved in formation and maintenance of cell shape
EP560_14590	COG1077	Cell shape determining protein MreB Mrl
EP560_14595	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
EP560_14605	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
EP560_14635	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
EP560_14640	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
EP560_14645	COG1752	Esterase of the alpha-beta hydrolase superfamily
EP560_14650	COG1115	amino acid carrier protein
EP560_14670	COG2814	Major facilitator Superfamily
EP560_14675	COG1289	transmembrane transporter activity
EP560_14700	COG1376	ErfK ybiS ycfS ynhG family protein
EP560_14705	COG2832	Protein of unknown function (DUF454)
EP560_14715	COG5510	response to toxic substance
EP560_14735	COG0840	transmembrane signaling receptor activity
EP560_14775	COG3422	double-strand break repair
EP560_14780	COG2824	Alkylphosphonate utilization operon protein PhnA
EP560_14785	COG3189	MarR family transcriptional regulator
EP560_14795	COG0354	folic acid binding
EP560_14800	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EP560_14810	COG0679	Auxin Efflux Carrier
EP560_14815	COG1902	pentaerythritol trinitrate reductase activity
EP560_14825	COG2094	Belongs to the DNA glycosylase MPG family
EP560_14855	COG2233	PERMEase
EP560_14865	COG0833	amino acid
EP560_14870	COG1690	Belongs to the RtcB family
EP560_14875	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
EP560_14875	COG2885	chlorophyll binding
EP560_14885	COG0183	Belongs to the thiolase family
EP560_14905	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
EP560_14925	COG2207	Transcriptional regulator
EP560_14930	COG0183	Belongs to the thiolase family
EP560_14960	COG1272	protein, Hemolysin III
EP560_14965	COG0477	Major facilitator Superfamily
EP560_14980	COG0450	alkyl hydroperoxide reductase
EP560_15000	COG0285	dihydrofolate synthase activity
EP560_15035	COG0133	tryptophan synthase activity
EP560_15050	COG2096	Adenosyltransferase
EP560_15055	COG0584	glycerophosphoryl diester phosphodiesterase
EP560_15070	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
EP560_15075	COG0745	RESPONSE REGULATOR receiver
EP560_15080	COG2205	protein histidine kinase activity
EP560_15090	COG1960	acyl-CoA dehydrogenase activity
EP560_15095	COG1960	acyl-CoA dehydrogenase activity
EP560_15160	COG2826	transposase and inactivated derivatives, IS30 family
EP560_15180	COG0438	transferase activity, transferring glycosyl groups
EP560_15185	COG0463	Glycosyl transferase, family 2
EP560_15190	COG0726	polysaccharide deacetylase
EP560_15210	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
EP560_15215	COG2205	protein histidine kinase activity
EP560_15245	COG1862	Preprotein translocase
EP560_15255	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
EP560_15260	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
EP560_15270	COG3781	membrane
EP560_15275	COG0613	PHP domain protein
EP560_15285	COG2350	Protein conserved in bacteria
EP560_15315	COG1607	acyl-coa hydrolase
EP560_15330	COG3453	Protein conserved in bacteria
EP560_15330	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
EP560_15375	COG2199	diguanylate cyclase activity
EP560_15390	COG1408	metallophosphoesterase
EP560_15395	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
EP560_15405	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
EP560_15425	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
EP560_15430	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
EP560_15445	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EP560_15455	COG2969	positive regulation of protein catabolic process
EP560_15475	COG1960	acyl-CoA dehydrogenase activity
EP560_15480	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
EP560_15495	COG1309	transcriptional regulator
EP560_15500	COG1960	acyl-CoA dehydrogenase activity
EP560_15545	COG1183	phosphatidylcholine synthase activity
EP560_15550	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
EP560_15580	COG0739	heme binding
EP560_15580	COG1196	nuclear chromosome segregation
EP560_15580	COG0741	lytic transglycosylase activity
EP560_15590	COG1702	phosphate starvation-inducible protein PhoH
EP560_15625	COG1295	ribonuclease BN
EP560_15630	COG0697	spore germination
EP560_15635	COG2169	Transcriptional regulator
EP560_15640	COG0179	Fumarylacetoacetate (FAA) hydrolase
EP560_15685	COG0557	exoribonuclease II activity
EP560_15690	COG0339	signal peptide processing
EP560_15695	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
EP560_15725	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
EP560_15730	COG1960	acyl-CoA dehydrogenase activity
EP560_15755	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
EP560_15765	COG0257	Belongs to the bacterial ribosomal protein bL36 family
EP560_15885	COG0626	cystathionine gamma-synthase activity
EP560_15890	COG0433	COG0433 Predicted ATPase
EP560_15895	COG1017	nitric oxide dioxygenase activity
EP560_15895	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
EP560_15900	COG1959	2 iron, 2 sulfur cluster binding
EP560_15915	COG1301	dicarboxylic acid transport
EP560_15920	COG1946	Acyl-CoA thioesterase
EP560_15940	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
EP560_15945	COG1040	competence protein
EP560_15950	COG0494	nUDIX hydrolase
EP560_15960	COG0598	Magnesium transport protein CorA
EP560_15970	COG2854	intermembrane phospholipid transfer
EP560_15980	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
EP560_15985	COG1127	ABC transporter
EP560_15995	COG0513	Belongs to the DEAD box helicase family
EP560_16015	COG0408	coproporphyrinogen oxidase activity
EP560_16030	COG1960	acyl-CoA dehydrogenase activity
EP560_16040	COG1983	PspC domain protein
EP560_16045	COG0517	IMP dehydrogenase activity
EP560_16095	COG0583	DNA-binding transcription factor activity
EP560_16135	COG1012	belongs to the aldehyde dehydrogenase family
EP560_16145	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EP560_16150	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
EP560_16155	COG0833	amino acid
EP560_16185	COG1192	Involved in chromosome partitioning
EP560_16190	COG0628	permease
EP560_16225	COG2249	NAD(P)H dehydrogenase (quinone) activity
EP560_16230	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
EP560_16240	COG0277	FAD linked oxidase domain protein
EP560_16245	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
EP560_16270	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
EP560_16275	COG5380	lipid catabolic process
EP560_16295	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
EP560_16345	COG0194	GDP metabolic process
EP560_16360	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
EP560_16380	COG3307	-O-antigen
EP560_16395	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
EP560_16400	COG1704	LemA family
EP560_16410	COG0493	'glutamate synthase
EP560_16415	COG0067	glutamate synthase
EP560_16415	COG0069	glutamate synthase activity
EP560_16415	COG0070	glutamate synthase
EP560_16465	COG2226	methyltransferase
EP560_16480	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
EP560_16485	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
EP560_16530	COG0833	amino acid
EP560_16615	COG0488	(ABC) transporter
EP560_16625	COG4221	oxidoreductase activity
EP560_16630	COG0659	secondary active sulfate transmembrane transporter activity
EP560_16640	COG0745	RESPONSE REGULATOR receiver
EP560_16655	COG0427	acetyl-CoA hydrolase
EP560_16685	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
EP560_16715	COG2329	Antibiotic biosynthesis monooxygenase
EP560_16730	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
EP560_16795	COG2249	NAD(P)H dehydrogenase (quinone) activity
EP560_16805	COG1733	regulation of RNA biosynthetic process
EP560_16840	COG0667	Aldo Keto reductase
EP560_16860	COG0583	DNA-binding transcription factor activity
EP560_16865	COG2814	Major facilitator Superfamily
EP560_16915	COG1335	isochorismatase
EP560_16925	COG1012	belongs to the aldehyde dehydrogenase family
EP560_16930	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EP560_16940	COG1113	amino acid transport
EP560_16950	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
EP560_16965	COG2814	Major facilitator Superfamily
EP560_16975	COG0351	phosphomethylpyrimidine kinase
EP560_16975	COG0352	thiamine-phosphate diphosphorylase activity
EP560_16975	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
EP560_16995	COG1309	transcriptional regulator
EP560_17000	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
EP560_17010	COG3706	GGDEF domain
EP560_17020	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
EP560_17030	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
EP560_17035	COG3162	membrane
EP560_17040	COG0784	Response regulator, receiver
EP560_17040	COG2205	protein histidine kinase activity
EP560_17040	COG2198	Histidine kinase
EP560_17065	COG1522	sequence-specific DNA binding
EP560_17070	COG1335	isochorismatase
EP560_17075	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EP560_17085	COG0668	transmembrane transport
EP560_17090	COG1385	rRNA (uridine-N3-)-methyltransferase activity
EP560_17095	COG1519	Transferase
EP560_17100	COG1902	pentaerythritol trinitrate reductase activity
EP560_17120	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
EP560_17145	COG0426	domain, Protein
EP560_17145	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
EP560_17150	COG4774	siderophore transport
EP560_17155	COG2119	membrane
EP560_17165	COG0508	dehydrogenase complex catalyzes the overall conversion of
EP560_17175	COG4942	peptidase
EP560_17190	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
EP560_17200	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
EP560_17220	COG0189	ligase activity
EP560_17240	COG0708	Exodeoxyribonuclease III
EP560_17245	COG1393	Belongs to the ArsC family
EP560_17260	COG3706	GGDEF domain
EP560_17295	COG2351	hydroxyisourate hydrolase activity
EP560_17300	COG2233	PERMEase
EP560_17310	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
EP560_17320	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
EP560_17325	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_17335	COG3150	esterase
EP560_17355	COG4372	Transposase
EP560_17365	COG1388	LysM domain
EP560_17375	COG3501	Rhs element vgr protein
EP560_17385	COG2918	glutathione biosynthetic process
EP560_17400	COG2733	membrane
EP560_17405	COG0436	Aminotransferase
EP560_17410	COG0534	Mate efflux family protein
EP560_17470	COG0753	catalase activity
EP560_17520	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
EP560_17525	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
EP560_17535	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EP560_17580	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
EP560_17595	COG0010	Belongs to the arginase family
EP560_17625	COG2188	Transcriptional regulator
EP560_17635	COG0523	cobalamin synthesis protein
EP560_17645	COG1113	amino acid transport
EP560_17655	COG0625	glutathione transferase activity
EP560_17675	COG1683	Conserved Protein
EP560_17680	COG0534	Mate efflux family protein
EP560_17685	COG0385	Bile acid
EP560_17690	COG1335	isochorismatase
EP560_17695	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
EP560_17720	COG2116	formate transmembrane transporter activity
EP560_17725	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
EP560_17730	COG2133	pyrroloquinoline quinone binding
EP560_17735	COG2983	Belongs to the UPF0260 family
EP560_17745	COG0400	carboxylic ester hydrolase activity
EP560_17755	COG1194	a g-specific adenine glycosylase
EP560_17770	COG2818	Glycosylase
EP560_17775	COG1064	alcohol dehydrogenase
EP560_17780	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
EP560_17795	COG0583	DNA-binding transcription factor activity
EP560_17800	COG0656	L-ascorbic acid biosynthetic process
EP560_17805	COG2814	Major facilitator Superfamily
EP560_17840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
EP560_17855	COG2233	PERMEase
EP560_17860	COG0583	DNA-binding transcription factor activity
EP560_17885	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
EP560_17895	COG0733	neurotransmitter:sodium symporter activity
EP560_17935	COG1309	transcriptional regulator
EP560_17970	COG0758	DNA mediated transformation
EP560_17980	COG0697	spore germination
EP560_17985	COG1309	transcriptional regulator
EP560_18000	COG0386	Belongs to the glutathione peroxidase family
EP560_18070	COG1121	(ABC) transporter
EP560_18075	COG1108	ABC-type Mn2 Zn2 transport systems permease components
EP560_18080	COG1280	lysine exporter protein (LysE YggA)
EP560_18085	COG2837	iron assimilation
EP560_18090	COG0281	malic enzyme
EP560_18150	COG0518	GMP synthase (glutamine-hydrolyzing) activity
EP560_18150	COG0519	Catalyzes the synthesis of GMP from XMP
EP560_18155	COG4399	Belongs to the UPF0754 family
EP560_18160	COG2259	Doxx family
EP560_18165	COG0586	Pfam SNARE associated Golgi protein
EP560_18180	COG1192	Involved in chromosome partitioning
EP560_18190	COG0271	Belongs to the BolA IbaG family
EP560_18230	COG3321	synthase
EP560_18230	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
EP560_18230	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
EP560_18230	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
EP560_18235	COG1960	acyl-CoA dehydrogenase activity
EP560_18245	COG2197	response regulator
EP560_18255	COG3916	Acyl-homoserine-lactone synthase
EP560_18260	COG0477	Major facilitator Superfamily
EP560_18265	COG1024	Enoyl-CoA hydratase
EP560_18270	COG1024	Enoyl-CoA hydratase
EP560_18275	COG1960	acyl-CoA dehydrogenase activity
EP560_18280	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
EP560_18300	COG1113	amino acid transport
EP560_18305	COG1113	amino acid transport
EP560_18310	COG0251	oxidation-reduction process
EP560_18325	COG1522	sequence-specific DNA binding
EP560_18350	COG0564	pseudouridine synthase activity
EP560_18400	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
EP560_18415	COG1802	Transcriptional regulator
EP560_18425	COG1448	Aminotransferase
EP560_18430	COG0277	FAD linked oxidase domain protein
EP560_18440	COG2186	Transcriptional regulator
EP560_18450	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
EP560_18460	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
EP560_18475	COG1210	Utp--glucose-1-phosphate uridylyltransferase
EP560_18480	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
EP560_18485	COG1216	Glycosyl transferase, family 2
EP560_18505	COG0438	transferase activity, transferring glycosyl groups
EP560_18535	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
EP560_18565	COG0728	peptidoglycan biosynthetic process
EP560_18570	COG3023	N-Acetylmuramoyl-L-alanine amidase
EP560_18625	COG0546	phosphoglycolate phosphatase activity
EP560_18630	COG1028	Short-chain dehydrogenase reductase Sdr
EP560_18650	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EP560_18655	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
EP560_18660	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EP560_18665	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
EP560_18670	COG1116	anion transmembrane transporter activity
EP560_18675	COG1309	transcriptional regulator
EP560_18680	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
EP560_18690	COG0196	riboflavin kinase activity
EP560_18695	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
EP560_18705	COG1047	Peptidyl-prolyl cis-trans
EP560_18745	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
EP560_18800	COG2951	lytic endotransglycosylase activity
EP560_18805	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
EP560_18825	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
EP560_18835	COG0671	phosphoesterase, PA-phosphatase related
EP560_18840	COG0861	Integral membrane protein TerC family
EP560_18850	COG0754	glutathionylspermidine amidase activity
EP560_18860	COG0402	S-adenosylhomocysteine deaminase activity
EP560_18875	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EP560_18880	COG1230	cation diffusion facilitator family transporter
EP560_18895	COG0706	membrane insertase activity
EP560_18910	COG0230	Belongs to the bacterial ribosomal protein bL34 family
EP560_18935	COG0358	DNA primase activity
EP560_18975	COG0194	GDP metabolic process
EP560_19000	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
EP560_19055	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
EP560_19100	COG0419	ATPase involved in DNA repair
EP560_19125	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
EP560_19125	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EP560_19130	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EP560_19155	COG0756	dUTP diphosphatase activity
EP560_19400	COG1475	DNA binding
EP560_19405	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
EP560_19515	COG0791	NLP P60 protein
EP560_19595	COG1525	nuclease
EP560_19675	COG1475	DNA binding
EP560_19695	COG3853	Toxic anion resistance protein (TelA)
EP560_19800	COG0484	heat shock protein binding
EP560_19870	COG2826	transposase and inactivated derivatives, IS30 family
EP560_19880	COG2826	transposase and inactivated derivatives, IS30 family
EP560_19910	COG0741	lytic transglycosylase activity
EP560_19945	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
EP560_20025	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
EP560_20080	COG2826	transposase and inactivated derivatives, IS30 family