locus-tag class description EP550_00005 PF11638 DnaA N-terminal domain EP550_00005 PF00308 Bacterial dnaA protein EP550_00005 PF08299 Bacterial dnaA protein helix-turn-helix EP550_00010 PF02767 DNA polymerase III beta subunit, central domain EP550_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EP550_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EP550_00015 PF02463 RecF/RecN/SMC N terminal domain EP550_00020 PF18053 DNA gyrase B subunit insert domain EP550_00020 PF00986 DNA gyrase B subunit, carboxyl terminus EP550_00020 PF01751 Toprim domain EP550_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_00020 PF00204 DNA gyrase B EP550_00030 PF09335 SNARE associated Golgi protein EP550_00035 PF12848 ABC transporter EP550_00035 PF00005 ABC transporter EP550_00055 PF01521 Iron-sulphur cluster biosynthesis EP550_00060 PF00561 alpha/beta hydrolase fold EP550_00065 PF03702 Anhydro-N-acetylmuramic acid kinase EP550_00070 PF00579 tRNA synthetases class I (W and Y) EP550_00115 PF00209 Sodium:neurotransmitter symporter family EP550_00125 PF01029 NusB family EP550_00125 PF01189 16S rRNA methyltransferase RsmB/F EP550_00130 PF00551 Formyl transferase EP550_00130 PF02911 Formyl transferase, C-terminal domain EP550_00135 PF00920 Dehydratase family EP550_00150 PF03466 LysR substrate binding domain EP550_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_00155 PF00860 Permease family EP550_00160 PF00311 Phosphoenolpyruvate carboxylase EP550_00165 PF00440 Bacterial regulatory proteins, tetR family EP550_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region EP550_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_00175 PF00873 AcrB/AcrD/AcrF family EP550_00185 PF00684 DnaJ central domain EP550_00185 PF00226 DnaJ domain EP550_00185 PF01556 DnaJ C terminal domain EP550_00195 PF05173 Dihydrodipicolinate reductase, C-terminus EP550_00195 PF01113 Dihydrodipicolinate reductase, N-terminus EP550_00205 PF07690 Major Facilitator Superfamily EP550_00210 PF00248 Aldo/keto reductase family EP550_00215 PF03466 LysR substrate binding domain EP550_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_00230 PF00392 Bacterial regulatory proteins, gntR family EP550_00230 PF00155 Aminotransferase class I and II EP550_00235 PF08240 Alcohol dehydrogenase GroES-like domain EP550_00235 PF00107 Zinc-binding dehydrogenase EP550_00240 PF03352 Methyladenine glycosylase EP550_00255 PF14815 NUDIX domain EP550_00255 PF00633 Helix-hairpin-helix motif EP550_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein EP550_00255 PF10576 Iron-sulfur binding domain of endonuclease III EP550_00265 PF02230 Phospholipase/Carboxylesterase EP550_00270 PF07043 Protein of unknown function (DUF1328) EP550_00275 PF03692 Putative zinc- or iron-chelating domain EP550_00280 PF07995 Glucose / Sorbosone dehydrogenase EP550_00285 PF12002 MgsA AAA+ ATPase C terminal EP550_00285 PF16193 AAA C-terminal domain EP550_00285 PF00004 ATPase family associated with various cellular activities (AAA) EP550_00290 PF01226 Formate/nitrite transporter EP550_00305 PF01259 SAICAR synthetase EP550_00315 PF00701 Dihydrodipicolinate synthetase family EP550_00320 PF00857 Isochorismatase family EP550_00325 PF01758 Sodium Bile acid symporter family EP550_00330 PF01554 MatE EP550_00335 PF04463 Protein of unknown function (DUF523) EP550_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP550_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP550_00355 PF02798 Glutathione S-transferase, N-terminal domain EP550_00355 PF14497 Glutathione S-transferase, C-terminal domain EP550_00365 PF00324 Amino acid permease EP550_00375 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP550_00375 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP550_00385 PF07702 UTRA domain EP550_00385 PF00392 Bacterial regulatory proteins, gntR family EP550_00390 PF05962 HutD EP550_00395 PF01175 Urocanase Rossmann-like domain EP550_00395 PF17392 Urocanase C-terminal domain EP550_00395 PF17391 Urocanase N-terminal domain EP550_00400 PF00221 Aromatic amino acid lyase EP550_00405 PF00324 Amino acid permease EP550_00410 PF01979 Amidohydrolase family EP550_00415 PF00491 Arginase family EP550_00430 PF01177 Asp/Glu/Hydantoin racemase EP550_00440 PF02086 D12 class N6 adenine-specific DNA methyltransferase EP550_00455 PF15978 Tn7-like transposition protein D EP550_00455 PF06527 TniQ EP550_00460 PF13401 AAA domain EP550_00460 PF11426 Tn7 transposition regulator TnsC EP550_00465 PF00665 Integrase core domain EP550_00470 PF08722 TnsA endonuclease N terminal EP550_00470 PF08721 TnsA endonuclease C terminal EP550_00475 PF01380 SIS domain EP550_00480 PF12804 MobA-like NTP transferase domain EP550_00480 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_00480 PF14602 Hexapeptide repeat of succinyl-transferase EP550_00485 PF04608 Phosphatidylglycerophosphatase A EP550_00490 PF00586 AIR synthase related protein, N-terminal domain EP550_00490 PF02769 AIR synthase related protein, C-terminal domain EP550_00495 PF01029 NusB family EP550_00500 PF00885 6,7-dimethyl-8-ribityllumazine synthase EP550_00505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP550_00505 PF00925 GTP cyclohydrolase II EP550_00535 PF02580 D-Tyr-tRNA(Tyr) deacylase EP550_00540 PF06628 Catalase-related immune-responsive EP550_00540 PF00199 Catalase EP550_00550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP550_00550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EP550_00555 PF00581 Rhodanese-like domain EP550_00560 PF02666 Phosphatidylserine decarboxylase EP550_00565 PF13737 Transposase DDE domain EP550_00570 PF03069 Acetamidase/Formamidase family EP550_00575 PF01547 Bacterial extracellular solute-binding protein EP550_00585 PF00512 His Kinase A (phospho-acceptor) domain EP550_00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_00585 PF11808 Phosphate regulon sensor protein PhoR EP550_00585 PF00989 PAS fold EP550_00590 PF00072 Response regulator receiver domain EP550_00590 PF00486 Transcriptional regulatory protein, C terminal EP550_00600 PF00106 short chain dehydrogenase EP550_00605 PF01554 MatE EP550_00610 PF00155 Aminotransferase class I and II EP550_00615 PF04286 Protein of unknown function (DUF445) EP550_00630 PF04262 Glutamate-cysteine ligase EP550_00635 PF02600 Disulfide bond formation protein DsbB EP550_00640 PF04717 Type VI secretion system, phage-baseplate injector EP550_00650 PF01476 LysM domain EP550_00650 PF04650 YSIRK type signal peptide EP550_00650 PF00746 LPXTG cell wall anchor motif EP550_00650 PF02216 B domain EP550_00650 PF03373 Octapeptide repeat EP550_00660 PF03050 Transposase IS66 family EP550_00660 PF13817 IS66 C-terminal element EP550_00660 PF13007 Transposase C of IS166 homeodomain EP550_00660 PF13005 zinc-finger binding domain of transposase IS66 EP550_00680 PF05728 Uncharacterised protein family (UPF0227) EP550_00685 PF00204 DNA gyrase B EP550_00685 PF00986 DNA gyrase B subunit, carboxyl terminus EP550_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_00685 PF01751 Toprim domain EP550_00690 PF00106 short chain dehydrogenase EP550_00695 PF04115 Ureidoglycolate lyase EP550_00700 PF03561 Allantoicase repeat EP550_00705 PF01494 FAD binding domain EP550_00715 PF00860 Permease family EP550_00720 PF00576 HIUase/Transthyretin family EP550_00750 PF02683 Cytochrome C biogenesis protein transmembrane region EP550_00750 PF11412 Disulphide bond corrector protein DsbC EP550_00755 PF07694 5TMR of 5TMR-LYT EP550_00755 PF00990 Diguanylate cyclase, GGDEF domain EP550_00760 PF07859 alpha/beta hydrolase fold EP550_00770 PF03960 ArsC family EP550_00775 PF03372 Endonuclease/Exonuclease/phosphatase family EP550_00780 PF00156 Phosphoribosyl transferase domain EP550_00795 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EP550_00795 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EP550_00800 PF04101 Glycosyltransferase family 28 C-terminal domain EP550_00800 PF03033 Glycosyltransferase family 28 N-terminal domain EP550_00805 PF08245 Mur ligase middle domain EP550_00805 PF02875 Mur ligase family, glutamate ligase domain EP550_00805 PF01225 Mur ligase family, catalytic domain EP550_00810 PF01820 D-ala D-ala ligase N-terminus EP550_00810 PF07478 D-ala D-ala ligase C-terminus EP550_00815 PF03799 Cell division protein FtsQ EP550_00815 PF08478 POTRA domain, FtsQ-type EP550_00820 PF02491 SHS2 domain inserted in FTSA EP550_00825 PF00091 Tubulin/FtsZ family, GTPase domain EP550_00825 PF12327 FtsZ family, C-terminal domain EP550_00830 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EP550_00840 PF01551 Peptidase family M23 EP550_00845 PF00456 Transketolase, thiamine diphosphate binding domain EP550_00845 PF17831 Pyruvate dehydrogenase E1 component middle domain EP550_00850 PF02817 e3 binding domain EP550_00850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP550_00850 PF00364 Biotin-requiring enzyme EP550_00860 PF01169 Uncharacterized protein family UPF0016 EP550_00865 PF00593 TonB dependent receptor EP550_00865 PF07715 TonB-dependent Receptor Plug Domain EP550_00870 PF01613 Flavin reductase like domain EP550_00870 PF00258 Flavodoxin EP550_00875 PF03692 Putative zinc- or iron-chelating domain EP550_00880 PF00571 CBS domain EP550_00880 PF00478 IMP dehydrogenase / GMP reductase domain EP550_00885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP550_00885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP550_00885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP550_00885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP550_00890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EP550_00890 PF01243 Pyridoxamine 5'-phosphate oxidase EP550_00895 PF01368 DHH family EP550_00895 PF02272 DHHA1 domain EP550_00895 PF17768 RecJ OB domain EP550_00915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP550_00920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EP550_00925 PF04452 RNA methyltransferase EP550_00930 PF00924 Mechanosensitive ion channel EP550_00940 PF16177 Acetyl-coenzyme A synthetase N-terminus EP550_00940 PF00501 AMP-binding enzyme EP550_00940 PF13193 AMP-binding enzyme C-terminal domain EP550_00945 PF00857 Isochorismatase family EP550_00950 PF01037 Lrp/AsnC ligand binding domain EP550_00955 PF00296 Luciferase-like monooxygenase EP550_00960 PF03358 NADPH-dependent FMN reductase EP550_00965 PF00196 Bacterial regulatory proteins, luxR family EP550_00965 PF00072 Response regulator receiver domain EP550_00975 PF00672 HAMP domain EP550_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_00975 PF00512 His Kinase A (phospho-acceptor) domain EP550_00975 PF01627 Hpt domain EP550_00975 PF00072 Response regulator receiver domain EP550_00980 PF04341 Protein of unknown function, DUF485 EP550_00985 PF00474 Sodium:solute symporter family EP550_00995 PF02028 BCCT, betaine/carnitine/choline family transporter EP550_01005 PF17158 Membrane-associated sensor, integral membrane domain EP550_01005 PF00990 Diguanylate cyclase, GGDEF domain EP550_01015 PF17760 UvrA interaction domain EP550_01015 PF17755 UvrA DNA-binding domain EP550_01015 PF00005 ABC transporter EP550_01020 PF00440 Bacterial regulatory proteins, tetR family EP550_01020 PF16925 Tetracyclin repressor-like, C-terminal domain EP550_01035 PF06942 GlpM protein EP550_01040 PF03070 TENA/THI-4/PQQC family EP550_01040 PF02581 Thiamine monophosphate synthase EP550_01040 PF08543 Phosphomethylpyrimidine kinase EP550_01050 PF07690 Major Facilitator Superfamily EP550_01055 PF00436 Single-strand binding protein family EP550_01065 PF03591 AzlC protein EP550_01075 PF00324 Amino acid permease EP550_01080 PF00392 Bacterial regulatory proteins, gntR family EP550_01080 PF00155 Aminotransferase class I and II EP550_01085 PF00202 Aminotransferase class-III EP550_01090 PF00171 Aldehyde dehydrogenase family EP550_01095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_01100 PF00857 Isochorismatase family EP550_01105 PF05726 Pirin C-terminal cupin domain EP550_01105 PF02678 Pirin EP550_01110 PF01593 Flavin containing amine oxidoreductase EP550_01115 PF13817 IS66 C-terminal element EP550_01115 PF13007 Transposase C of IS166 homeodomain EP550_01115 PF13005 zinc-finger binding domain of transposase IS66 EP550_01115 PF03050 Transposase IS66 family EP550_01150 PF07690 Major Facilitator Superfamily EP550_01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_01155 PF03466 LysR substrate binding domain EP550_01175 PF00248 Aldo/keto reductase family EP550_01180 PF12833 Helix-turn-helix domain EP550_01180 PF02311 AraC-like ligand binding domain EP550_01210 PF01638 HxlR-like helix-turn-helix EP550_01220 PF02525 Flavodoxin-like fold EP550_01240 PF02705 K+ potassium transporter EP550_01265 PF00230 Major intrinsic protein EP550_01280 PF00977 Histidine biosynthesis protein EP550_01285 PF01636 Phosphotransferase enzyme family EP550_01300 PF03992 Antibiotic biosynthesis monooxygenase EP550_01315 PF00977 Histidine biosynthesis protein EP550_01330 PF00117 Glutamine amidotransferase class-I EP550_01335 PF00475 Imidazoleglycerol-phosphate dehydratase EP550_01355 PF00583 Acetyltransferase (GNAT) family EP550_01360 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EP550_01360 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EP550_01370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_01370 PF00512 His Kinase A (phospho-acceptor) domain EP550_01370 PF00672 HAMP domain EP550_01375 PF00072 Response regulator receiver domain EP550_01375 PF00486 Transcriptional regulatory protein, C terminal EP550_01380 PF16921 Tex protein YqgF-like domain EP550_01380 PF09371 Tex-like protein N-terminal domain EP550_01380 PF00575 S1 RNA binding domain EP550_01380 PF17674 HHH domain EP550_01385 PF01740 STAS domain EP550_01385 PF00916 Sulfate permease family EP550_01390 PF00106 short chain dehydrogenase EP550_01395 PF01053 Cys/Met metabolism PLP-dependent enzyme EP550_01400 PF00005 ABC transporter EP550_01400 PF12848 ABC transporter EP550_01425 PF04191 Phospholipid methyltransferase EP550_01445 PF00529 HlyD membrane-fusion protein of T1SS EP550_01445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_01450 PF00873 AcrB/AcrD/AcrF family EP550_01455 PF01545 Cation efflux family EP550_01485 PF00324 Amino acid permease EP550_01500 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP550_01515 PF01795 MraW methylase family EP550_01525 PF00905 Penicillin binding protein transpeptidase domain EP550_01525 PF03717 Penicillin-binding Protein dimerisation domain EP550_01530 PF08245 Mur ligase middle domain EP550_01530 PF02875 Mur ligase family, glutamate ligase domain EP550_01530 PF01225 Mur ligase family, catalytic domain EP550_01535 PF01225 Mur ligase family, catalytic domain EP550_01535 PF02875 Mur ligase family, glutamate ligase domain EP550_01535 PF08245 Mur ligase middle domain EP550_01540 PF00953 Glycosyl transferase family 4 EP550_01550 PF13847 Methyltransferase domain EP550_01555 PF00912 Transglycosylase EP550_01555 PF00905 Penicillin binding protein transpeptidase domain EP550_01555 PF17092 Penicillin-binding protein OB-like domain EP550_01580 PF07660 Secretin and TonB N terminus short domain EP550_01580 PF03958 Bacterial type II/III secretion system short domain EP550_01580 PF00263 Bacterial type II and III secretion system protein EP550_01580 PF11741 AMIN domain EP550_01585 PF01202 Shikimate kinase EP550_01590 PF01761 3-dehydroquinate synthase EP550_01600 PF01645 Conserved region in glutamate synthase EP550_01600 PF00310 Glutamine amidotransferases class-II EP550_01600 PF01493 GXGXG motif EP550_01600 PF04898 Glutamate synthase central domain EP550_01605 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EP550_01605 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_01615 PF04011 LemA family EP550_01620 PF04536 TPM domain EP550_01630 PF07963 Prokaryotic N-terminal methylation motif EP550_01630 PF00114 Pilin (bacterial filament) EP550_01635 PF11846 Virulence factor membrane-bound polymerase, C-terminal EP550_01635 PF15864 Protein glycosylation ligase EP550_01635 PF04932 O-Antigen ligase EP550_01640 PF00210 Ferritin-like domain EP550_01645 PF04324 BFD-like [2Fe-2S] binding domain EP550_01650 PF01042 Endoribonuclease L-PSP EP550_01655 PF13291 ACT domain EP550_01655 PF04607 Region found in RelA / SpoT proteins EP550_01655 PF02824 TGS domain EP550_01665 PF01192 RNA polymerase Rpb6 EP550_01670 PF00625 Guanylate kinase EP550_01675 PF02401 LytB protein EP550_01715 PF00886 Ribosomal protein S16 EP550_01720 PF05239 PRC-barrel domain EP550_01720 PF01782 RimM N-terminal domain EP550_01725 PF01746 tRNA (Guanine-1)-methyltransferase EP550_01730 PF01245 Ribosomal protein L19 EP550_01735 PF00561 alpha/beta hydrolase fold EP550_01740 PF03280 Proteobacterial lipase chaperone protein EP550_01745 PF16198 tRNA pseudouridylate synthase B C-terminal domain EP550_01745 PF09157 Pseudouridine synthase II TruB, C-terminal EP550_01745 PF01509 TruB family pseudouridylate synthase (N terminal domain) EP550_01750 PF01925 Sulfite exporter TauE/SafE EP550_01760 PF00892 EamA-like transporter family EP550_01765 PF00892 EamA-like transporter family EP550_01770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP550_01770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP550_01775 PF01565 FAD binding domain EP550_01775 PF02913 FAD linked oxidases, C-terminal domain EP550_01785 PF03992 Antibiotic biosynthesis monooxygenase EP550_01790 PF02525 Flavodoxin-like fold EP550_01800 PF07690 Major Facilitator Superfamily EP550_01820 PF00080 Copper/zinc superoxide dismutase (SODC) EP550_01825 PF01594 AI-2E family transporter EP550_01830 PF13614 AAA domain EP550_01850 PF08241 Methyltransferase domain EP550_01860 PF00324 Amino acid permease EP550_01865 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP550_01865 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP550_01870 PF00202 Aminotransferase class-III EP550_01875 PF04958 Arginine N-succinyltransferase beta subunit EP550_01880 PF00171 Aldehyde dehydrogenase family EP550_01885 PF04996 Succinylarginine dihydrolase EP550_01890 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP550_01920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_01920 PF03466 LysR substrate binding domain EP550_01925 PF00892 EamA-like transporter family EP550_01940 PF02092 Glycyl-tRNA synthetase beta subunit EP550_01940 PF05746 DALR anticodon binding domain EP550_01945 PF02091 Glycyl-tRNA synthetase alpha subunit EP550_01970 PF00571 CBS domain EP550_01975 PF04024 PspC domain EP550_01985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_01985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_01985 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP550_01985 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_01995 PF08501 Shikimate dehydrogenase substrate binding domain EP550_01995 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EP550_01995 PF01488 Shikimate / quinate 5-dehydrogenase EP550_02000 PF01218 Coproporphyrinogen III oxidase EP550_02005 PF00925 GTP cyclohydrolase II EP550_02010 PF02779 Transketolase, pyrimidine binding domain EP550_02010 PF02780 Transketolase, C-terminal domain EP550_02010 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EP550_02015 PF00459 Inositol monophosphatase family EP550_02020 PF12343 Cold shock protein DEAD box A EP550_02020 PF00270 DEAD/DEAH box helicase EP550_02020 PF03880 DbpA RNA binding domain EP550_02020 PF00271 Helicase conserved C-terminal domain EP550_02030 PF00005 ABC transporter EP550_02035 PF02405 Permease MlaE EP550_02045 PF05494 MlaC protein EP550_02055 PF01544 CorA-like Mg2+ transporter protein EP550_02060 PF03641 Possible lysine decarboxylase EP550_02065 PF00293 NUDIX domain EP550_02070 PF00156 Phosphoribosyl transferase domain EP550_02075 PF00271 Helicase conserved C-terminal domain EP550_02075 PF17191 RecG wedge domain EP550_02075 PF00270 DEAD/DEAH box helicase EP550_02090 PF01553 Acyltransferase EP550_02100 PF00375 Sodium:dicarboxylate symporter family EP550_02110 PF01926 50S ribosome-binding GTPase EP550_02115 PF02082 Transcriptional regulator EP550_02120 PF00175 Oxidoreductase NAD-binding domain EP550_02120 PF00970 Oxidoreductase FAD-binding domain EP550_02120 PF00042 Globin EP550_02125 PF05872 Bacterial protein of unknown function (DUF853) EP550_02130 PF01053 Cys/Met metabolism PLP-dependent enzyme EP550_02135 PF00117 Glutamine amidotransferase class-I EP550_02140 PF00338 Ribosomal protein S10p/S20e EP550_02145 PF00297 Ribosomal protein L3 EP550_02150 PF00573 Ribosomal protein L4/L1 family EP550_02155 PF00276 Ribosomal protein L23 EP550_02160 PF00181 Ribosomal Proteins L2, RNA binding domain EP550_02160 PF03947 Ribosomal Proteins L2, C-terminal domain EP550_02165 PF00203 Ribosomal protein S19 EP550_02170 PF00237 Ribosomal protein L22p/L17e EP550_02175 PF00189 Ribosomal protein S3, C-terminal domain EP550_02175 PF07650 KH domain EP550_02180 PF00252 Ribosomal protein L16p/L10e EP550_02185 PF00831 Ribosomal L29 protein EP550_02190 PF00366 Ribosomal protein S17 EP550_02195 PF00238 Ribosomal protein L14p/L23e EP550_02200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EP550_02200 PF00467 KOW motif EP550_02205 PF00281 Ribosomal protein L5 EP550_02205 PF00673 ribosomal L5P family C-terminus EP550_02210 PF00253 Ribosomal protein S14p/S29e EP550_02215 PF00410 Ribosomal protein S8 EP550_02220 PF00347 Ribosomal protein L6 EP550_02225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EP550_02230 PF00333 Ribosomal protein S5, N-terminal domain EP550_02230 PF03719 Ribosomal protein S5, C-terminal domain EP550_02235 PF00327 Ribosomal protein L30p/L7e EP550_02240 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EP550_02245 PF00344 SecY translocase EP550_02250 PF00444 Ribosomal protein L36 EP550_02255 PF00416 Ribosomal protein S13/S18 EP550_02260 PF00411 Ribosomal protein S11 EP550_02265 PF00163 Ribosomal protein S4/S9 N-terminal domain EP550_02265 PF01479 S4 domain EP550_02270 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EP550_02270 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EP550_02270 PF01000 RNA polymerase Rpb3/RpoA insert domain EP550_02275 PF01196 Ribosomal protein L17 EP550_02280 PF00743 Flavin-binding monooxygenase-like EP550_02285 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_02285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_02285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_02290 PF03937 Flavinator of succinate dehydrogenase EP550_02320 PF09526 Probable metal-binding protein (DUF2387) EP550_02325 PF01432 Peptidase family M3 EP550_02330 PF08461 Ribonuclease R winged-helix domain EP550_02330 PF17876 Cold shock domain EP550_02330 PF08206 Ribonuclease B OB domain EP550_02330 PF00773 RNB domain EP550_02330 PF00575 S1 RNA binding domain EP550_02370 PF01557 Fumarylacetoacetate (FAA) hydrolase family EP550_02375 PF12833 Helix-turn-helix domain EP550_02380 PF00892 EamA-like transporter family EP550_02385 PF03631 Virulence factor BrkB EP550_02390 PF03358 NADPH-dependent FMN reductase EP550_02415 PF02130 Uncharacterized protein family UPF0054 EP550_02420 PF02562 PhoH-like protein EP550_02425 PF01938 TRAM domain EP550_02425 PF04055 Radical SAM superfamily EP550_02425 PF00919 Uncharacterized protein family UPF0004 EP550_02430 PF01464 Transglycosylase SLT domain EP550_02430 PF01551 Peptidase family M23 EP550_02430 PF10145 Phage-related minor tail protein EP550_02440 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EP550_02440 PF00056 lactate/malate dehydrogenase, NAD binding domain EP550_02460 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EP550_02465 PF01066 CDP-alcohol phosphatidyltransferase EP550_02510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_02510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_02510 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_02515 PF17932 Tetracyclin repressor-like, C-terminal domain EP550_02515 PF00440 Bacterial regulatory proteins, tetR family EP550_02530 PF01039 Carboxyl transferase domain EP550_02535 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_02535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_02535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_02545 PF00289 Biotin carboxylase, N-terminal domain EP550_02545 PF02785 Biotin carboxylase C-terminal domain EP550_02545 PF00364 Biotin-requiring enzyme EP550_02545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP550_02555 PF04386 Stringent starvation protein B EP550_02560 PF00043 Glutathione S-transferase, C-terminal domain EP550_02560 PF13417 Glutathione S-transferase, N-terminal domain EP550_02565 PF00380 Ribosomal protein S9/S16 EP550_02570 PF00572 Ribosomal protein L13 EP550_02575 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EP550_02580 PF00398 Ribosomal RNA adenine dimethylase EP550_02585 PF00149 Calcineurin-like phosphoesterase EP550_02605 PF01926 50S ribosome-binding GTPase EP550_02605 PF13167 GTP-binding GTPase N-terminal EP550_02605 PF16360 GTP-binding GTPase Middle Region EP550_02615 PF13091 PLD-like domain EP550_02620 PF00149 Calcineurin-like phosphoesterase EP550_02620 PF10518 TAT (twin-arginine translocation) pathway signal sequence EP550_02625 PF01389 OmpA-like transmembrane domain EP550_02625 PF00691 OmpA family EP550_02635 PF00990 Diguanylate cyclase, GGDEF domain EP550_02635 PF17152 Periplasmic sensor domain EP550_02680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP550_02680 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_02690 PF04273 Putative phosphatase (DUF442) EP550_02690 PF00753 Metallo-beta-lactamase superfamily EP550_02695 PF00561 alpha/beta hydrolase fold EP550_02700 PF00085 Thioredoxin EP550_02705 PF03061 Thioesterase superfamily EP550_02715 PF04461 Protein of unknown function (DUF520) EP550_02725 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP550_02725 PF01266 FAD dependent oxidoreductase EP550_02735 PF03795 YCII-related domain EP550_02740 PF04279 Intracellular septation protein A EP550_02745 PF02811 PHP domain EP550_02750 PF01062 Bestrophin, RFP-TM, chloride channel EP550_02755 PF04002 RadC-like JAB domain EP550_02760 PF02441 Flavoprotein EP550_02760 PF04127 DNA / pantothenate metabolism flavoprotein EP550_02765 PF07549 SecD/SecF GG Motif EP550_02765 PF02355 Protein export membrane protein EP550_02770 PF02355 Protein export membrane protein EP550_02770 PF07549 SecD/SecF GG Motif EP550_02770 PF13721 SecD export protein N-terminal TM region EP550_02775 PF02699 Preprotein translocase subunit EP550_02780 PF01702 Queuine tRNA-ribosyltransferase EP550_02795 PF02547 Queuosine biosynthesis protein EP550_02805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_02805 PF07689 KaiB domain EP550_02805 PF00512 His Kinase A (phospho-acceptor) domain EP550_02810 PF08335 GlnD PII-uridylyltransferase EP550_02810 PF03710 Glutamate-ammonia ligase adenylyltransferase EP550_02815 PF01063 Amino-transferase class IV EP550_02830 PF01522 Polysaccharide deacetylase EP550_02835 PF00535 Glycosyl transferase family 2 EP550_02840 PF13439 Glycosyltransferase Family 4 EP550_02840 PF00534 Glycosyl transferases group 1 EP550_02865 PF13737 Transposase DDE domain EP550_02880 PF00152 tRNA synthetases class II (D, K and N) EP550_02880 PF01336 OB-fold nucleic acid binding domain EP550_02880 PF02938 GAD domain EP550_02890 PF00593 TonB dependent receptor EP550_02890 PF07715 TonB-dependent Receptor Plug Domain EP550_02910 PF06146 Phosphate-starvation-inducible E EP550_02915 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP550_02915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_02915 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_02915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_02920 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP550_02920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_02920 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_02920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_02930 PF00672 HAMP domain EP550_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_02930 PF00512 His Kinase A (phospho-acceptor) domain EP550_02935 PF00486 Transcriptional regulatory protein, C terminal EP550_02935 PF00072 Response regulator receiver domain EP550_02940 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EP550_02955 PF03009 Glycerophosphoryl diester phosphodiesterase family EP550_02960 PF01923 Cobalamin adenosyltransferase EP550_02965 PF00593 TonB dependent receptor EP550_02965 PF07715 TonB-dependent Receptor Plug Domain EP550_02970 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EP550_02975 PF00291 Pyridoxal-phosphate dependent enzyme EP550_03000 PF00290 Tryptophan synthase alpha chain EP550_03005 PF01039 Carboxyl transferase domain EP550_03010 PF02875 Mur ligase family, glutamate ligase domain EP550_03010 PF08245 Mur ligase middle domain EP550_03025 PF00753 Metallo-beta-lactamase superfamily EP550_03030 PF00578 AhpC/TSA family EP550_03030 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP550_03035 PF07517 SecA DEAD-like domain EP550_03035 PF02810 SEC-C motif EP550_03035 PF01043 SecA preprotein cross-linking domain EP550_03035 PF07516 SecA Wing and Scaffold domain EP550_03045 PF00083 Sugar (and other) transporter EP550_03045 PF07690 Major Facilitator Superfamily EP550_03050 PF03006 Haemolysin-III related EP550_03075 PF00378 Enoyl-CoA hydratase/isomerase EP550_03075 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP550_03075 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP550_03080 PF02803 Thiolase, C-terminal domain EP550_03080 PF00108 Thiolase, N-terminal domain EP550_03085 PF12833 Helix-turn-helix domain EP550_03085 PF02311 AraC-like ligand binding domain EP550_03090 PF02515 CoA-transferase family III EP550_03095 PF04966 Carbohydrate-selective porin, OprB family EP550_03100 PF01011 PQQ enzyme repeat EP550_03105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP550_03105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP550_03115 PF00893 Small Multidrug Resistance protein EP550_03125 PF02803 Thiolase, C-terminal domain EP550_03125 PF00108 Thiolase, N-terminal domain EP550_03135 PF13505 Outer membrane protein beta-barrel domain EP550_03135 PF00691 OmpA family EP550_03140 PF01139 tRNA-splicing ligase RtcB EP550_03145 PF00324 Amino acid permease EP550_03150 PF05175 Methyltransferase small domain EP550_03150 PF08468 Methyltransferase small domain N-terminal EP550_03155 PF00860 Permease family EP550_03165 PF01741 Large-conductance mechanosensitive channel, MscL EP550_03180 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EP550_03180 PF06827 Zinc finger found in FPG and IleRS EP550_03180 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EP550_03185 PF02245 Methylpurine-DNA glycosylase (MPG) EP550_03195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP550_03210 PF10411 Disulfide bond isomerase protein N-terminus EP550_03210 PF13098 Thioredoxin-like domain EP550_03215 PF01571 Aminomethyltransferase folate-binding domain EP550_03225 PF04343 Protein of unknown function, DUF488 EP550_03230 PF03831 PhnA domain EP550_03230 PF08274 PhnA Zinc-Ribbon EP550_03235 PF07411 Domain of unknown function (DUF1508) EP550_03240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP550_03240 PF04073 Aminoacyl-tRNA editing domain EP550_03240 PF03129 Anticodon binding domain EP550_03245 PF00873 AcrB/AcrD/AcrF family EP550_03260 PF00072 Response regulator receiver domain EP550_03265 PF00072 Response regulator receiver domain EP550_03270 PF01584 CheW-like domain EP550_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP550_03275 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EP550_03290 PF01546 Peptidase family M20/M25/M40 EP550_03290 PF07687 Peptidase dimerisation domain EP550_03295 PF08085 Entericidin EcnA/B family EP550_03305 PF04304 Protein of unknown function (DUF454) EP550_03310 PF03734 L,D-transpeptidase catalytic domain EP550_03310 PF17969 L,D-transpeptidase C-terminal domain EP550_03335 PF00258 Flavodoxin EP550_03335 PF00175 Oxidoreductase NAD-binding domain EP550_03335 PF00667 FAD binding domain EP550_03345 PF12805 FUSC-like inner membrane protein yccS EP550_03350 PF07690 Major Facilitator Superfamily EP550_03355 PF00881 Nitroreductase family EP550_03370 PF01235 Sodium:alanine symporter family EP550_03375 PF01734 Patatin-like phospholipase EP550_03380 PF00291 Pyridoxal-phosphate dependent enzyme EP550_03380 PF13291 ACT domain EP550_03385 PF05992 SbmA/BacA-like family EP550_03415 PF13737 Transposase DDE domain EP550_03425 PF02934 GatB/GatE catalytic domain EP550_03425 PF02637 GatB domain EP550_03430 PF01425 Amidase EP550_03435 PF02686 Glu-tRNAGln amidotransferase C subunit EP550_03445 PF04085 rod shape-determining protein MreC EP550_03450 PF04093 rod shape-determining protein MreD EP550_03455 PF02545 Maf-like protein EP550_03460 PF10150 Ribonuclease E/G family EP550_03460 PF00575 S1 RNA binding domain EP550_03470 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EP550_03470 PF06974 Protein of unknown function (DUF1298) EP550_03475 PF01507 Phosphoadenosine phosphosulfate reductase family EP550_03490 PF02525 Flavodoxin-like fold EP550_03510 PF02673 Bacitracin resistance protein BacA EP550_03515 PF06719 AraC-type transcriptional regulator N-terminus EP550_03515 PF12833 Helix-turn-helix domain EP550_03520 PF00698 Acyl transferase domain EP550_03520 PF00109 Beta-ketoacyl synthase, N-terminal domain EP550_03520 PF08990 Erythronolide synthase docking EP550_03520 PF08240 Alcohol dehydrogenase GroES-like domain EP550_03520 PF16197 Ketoacyl-synthetase C-terminal extension EP550_03520 PF08659 KR domain EP550_03520 PF00550 Phosphopantetheine attachment site EP550_03520 PF14765 Polyketide synthase dehydratase EP550_03520 PF09277 Erythronolide synthase, docking EP550_03520 PF02801 Beta-ketoacyl synthase, C-terminal domain EP550_03525 PF01965 DJ-1/PfpI family EP550_03535 PF00324 Amino acid permease EP550_03540 PF04303 PrpF protein EP550_03545 PF00348 Polyprenyl synthetase EP550_03550 PF04237 YjbR EP550_03555 PF01145 SPFH domain / Band 7 family EP550_03565 PF01734 Patatin-like phospholipase EP550_03585 PF00884 Sulfatase EP550_03585 PF08019 Phosphoethanolamine transferase EptA/EptB EP550_03590 PF00486 Transcriptional regulatory protein, C terminal EP550_03590 PF00072 Response regulator receiver domain EP550_03595 PF08521 Two-component sensor kinase N-terminal EP550_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_03595 PF00512 His Kinase A (phospho-acceptor) domain EP550_03605 PF00909 Ammonium Transporter Family EP550_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_03615 PF03466 LysR substrate binding domain EP550_03635 PF08264 Anticodon-binding domain of tRNA EP550_03635 PF00133 tRNA synthetases class I (I, L, M and V) EP550_03635 PF10458 Valyl tRNA synthetase tRNA binding arm EP550_03655 PF01906 Putative heavy-metal-binding EP550_03660 PF01906 Putative heavy-metal-binding EP550_03665 PF02321 Outer membrane efflux protein EP550_03670 PF00873 AcrB/AcrD/AcrF family EP550_03675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_03675 PF00529 HlyD membrane-fusion protein of T1SS EP550_03680 PF01569 PAP2 superfamily EP550_03690 PF00348 Polyprenyl synthetase EP550_03700 PF00829 Ribosomal prokaryotic L21 protein EP550_03705 PF01016 Ribosomal L27 protein EP550_03710 PF03548 Outer membrane lipoprotein carrier protein LolA EP550_03720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP550_03720 PF02403 Seryl-tRNA synthetase N-terminal domain EP550_03725 PF10414 Sirohaem synthase dimerisation region EP550_03725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP550_03725 PF14824 Sirohaem biosynthesis protein central EP550_03730 PF00588 SpoU rRNA Methylase family EP550_03735 PF01638 HxlR-like helix-turn-helix EP550_03740 PF03358 NADPH-dependent FMN reductase EP550_03745 PF13520 Amino acid permease EP550_03750 PF00465 Iron-containing alcohol dehydrogenase EP550_03760 PF03099 Biotin/lipoate A/B protein ligase family EP550_03765 PF04359 Protein of unknown function (DUF493) EP550_03770 PF04546 Sigma-70, non-essential region EP550_03770 PF03979 Sigma-70 factor, region 1.1 EP550_03770 PF00140 Sigma-70 factor, region 1.2 EP550_03770 PF04542 Sigma-70 region 2 EP550_03770 PF04545 Sigma-70, region 4 EP550_03770 PF04539 Sigma-70 region 3 EP550_03800 PF00285 Citrate synthase, C-terminal domain EP550_03805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP550_03810 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP550_03815 PF00890 FAD binding domain EP550_03815 PF02910 Fumarate reductase flavoprotein C-term EP550_03820 PF13085 2Fe-2S iron-sulfur cluster binding domain EP550_03835 PF16078 2-oxoglutarate dehydrogenase N-terminus EP550_03835 PF00676 Dehydrogenase E1 component EP550_03835 PF02779 Transketolase, pyrimidine binding domain EP550_03835 PF16870 2-oxoglutarate dehydrogenase C-terminal EP550_03840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP550_03840 PF00364 Biotin-requiring enzyme EP550_03840 PF02817 e3 binding domain EP550_03845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP550_03845 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_03850 PF00549 CoA-ligase EP550_03850 PF08442 ATP-grasp domain EP550_03855 PF00549 CoA-ligase EP550_03855 PF02629 CoA binding domain EP550_03860 PF00579 tRNA synthetases class I (W and Y) EP550_03865 PF05661 Protein of unknown function (DUF808) EP550_03870 PF04228 Putative neutral zinc metallopeptidase EP550_03875 PF00999 Sodium/hydrogen exchanger family EP550_03945 PF09587 Bacterial capsule synthesis protein PGA_cap EP550_03955 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP550_03960 PF00582 Universal stress protein family EP550_03965 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_03970 PF03449 Transcription elongation factor, N-terminal EP550_03970 PF01272 Transcription elongation factor, GreA/GreB, C-term EP550_03975 PF02142 MGS-like domain EP550_03975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP550_03975 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP550_03980 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EP550_03980 PF00117 Glutamine amidotransferase class-I EP550_03995 PF01985 CRS1 / YhbY (CRM) domain EP550_04000 PF01728 FtsJ-like methyltransferase EP550_04005 PF01434 Peptidase family M41 EP550_04005 PF06480 FtsH Extracellular EP550_04005 PF17862 AAA+ lid domain EP550_04005 PF00004 ATPase family associated with various cellular activities (AAA) EP550_04010 PF00809 Pterin binding enzyme EP550_04035 PF09423 PhoD-like phosphatase EP550_04035 PF16655 PhoD-like phosphatase, N-terminal domain EP550_04050 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EP550_04050 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EP550_04065 PF00083 Sugar (and other) transporter EP550_04070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP550_04070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP550_04075 PF01266 FAD dependent oxidoreductase EP550_04075 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EP550_04080 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain EP550_04080 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain EP550_04085 PF00781 Diacylglycerol kinase catalytic domain EP550_04090 PF00149 Calcineurin-like phosphoesterase EP550_04100 PF00166 Chaperonin 10 Kd subunit EP550_04105 PF00118 TCP-1/cpn60 chaperonin family EP550_04110 PF01219 Prokaryotic diacylglycerol kinase EP550_04115 PF00753 Metallo-beta-lactamase superfamily EP550_04120 PF03009 Glycerophosphoryl diester phosphodiesterase family EP550_04125 PF00873 AcrB/AcrD/AcrF family EP550_04135 PF01435 Peptidase family M48 EP550_04140 PF01464 Transglycosylase SLT domain EP550_04150 PF01171 PP-loop family EP550_04160 PF01464 Transglycosylase SLT domain EP550_04160 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP550_04165 PF03449 Transcription elongation factor, N-terminal EP550_04165 PF01272 Transcription elongation factor, GreA/GreB, C-term EP550_04180 PF00501 AMP-binding enzyme EP550_04180 PF13193 AMP-binding enzyme C-terminal domain EP550_04180 PF00550 Phosphopantetheine attachment site EP550_04180 PF00668 Condensation domain EP550_04180 PF00975 Thioesterase domain EP550_04210 PF00881 Nitroreductase family EP550_04225 PF02595 Glycerate kinase family EP550_04230 PF00384 Molybdopterin oxidoreductase EP550_04235 PF02634 FdhD/NarQ family EP550_04240 PF06803 Protein of unknown function (DUF1232) EP550_04245 PF11890 Domain of unknown function (DUF3410) EP550_04245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP550_04245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP550_04250 PF00152 tRNA synthetases class II (D, K and N) EP550_04260 PF18073 Rubredoxin metal binding domain EP550_04265 PF00324 Amino acid permease EP550_04275 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP550_04275 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP550_04280 PF01678 Diaminopimelate epimerase EP550_04285 PF01810 LysE type translocator EP550_04290 PF02899 Phage integrase, N-terminal SAM-like domain EP550_04290 PF00589 Phage integrase family EP550_04295 PF01012 Electron transfer flavoprotein domain EP550_04300 PF00766 Electron transfer flavoprotein FAD-binding domain EP550_04300 PF01012 Electron transfer flavoprotein domain EP550_04305 PF03989 DNA gyrase C-terminal domain, beta-propeller EP550_04305 PF00521 DNA gyrase/topoisomerase IV, subunit A EP550_04320 PF00535 Glycosyl transferase family 2 EP550_04340 PF13533 Biotin-lipoyl like EP550_04350 PF00266 Aminotransferase class-V EP550_04360 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EP550_04370 PF12704 MacB-like periplasmic core domain EP550_04370 PF02687 FtsX-like permease family EP550_04375 PF00005 ABC transporter EP550_04380 PF00753 Metallo-beta-lactamase superfamily EP550_04380 PF03772 Competence protein EP550_04380 PF13567 Domain of unknown function (DUF4131) EP550_04390 PF01343 Peptidase family S49 EP550_04390 PF06965 Na+/H+ antiporter 1 EP550_04395 PF12697 Alpha/beta hydrolase family EP550_04400 PF00551 Formyl transferase EP550_04405 PF02769 AIR synthase related protein, C-terminal domain EP550_04405 PF00586 AIR synthase related protein, N-terminal domain EP550_04410 PF01594 AI-2E family transporter EP550_04415 PF11638 DnaA N-terminal domain EP550_04415 PF00308 Bacterial dnaA protein EP550_04415 PF08299 Bacterial dnaA protein helix-turn-helix EP550_04455 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP550_04455 PF00588 SpoU rRNA Methylase family EP550_04460 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP550_04470 PF00691 OmpA family EP550_04475 PF04052 TolB amino-terminal domain EP550_04475 PF07676 WD40-like Beta Propeller Repeat EP550_04485 PF02472 Biopolymer transport protein ExbD/TolR EP550_04490 PF01618 MotA/TolQ/ExbB proton channel family EP550_04495 PF03061 Thioesterase superfamily EP550_04500 PF07687 Peptidase dimerisation domain EP550_04500 PF01546 Peptidase family M20/M25/M40 EP550_04505 PF05491 RuvB C-terminal winged helix domain EP550_04505 PF05496 Holliday junction DNA helicase RuvB P-loop domain EP550_04505 PF17864 RuvB AAA lid domain EP550_04510 PF01330 RuvA N terminal domain EP550_04510 PF07499 RuvA, C-terminal domain EP550_04515 PF01966 HD domain EP550_04520 PF02769 AIR synthase related protein, C-terminal domain EP550_04520 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EP550_04520 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EP550_04525 PF07690 Major Facilitator Superfamily EP550_04530 PF01784 NIF3 (NGG1p interacting factor 3) EP550_04535 PF00378 Enoyl-CoA hydratase/isomerase EP550_04540 PF00293 NUDIX domain EP550_04540 PF01467 Cytidylyltransferase-like EP550_04550 PF00578 AhpC/TSA family EP550_04565 PF06508 Queuosine biosynthesis protein QueC EP550_04575 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EP550_04575 PF14602 Hexapeptide repeat of succinyl-transferase EP550_04575 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_04585 PF03466 LysR substrate binding domain EP550_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_04590 PF12857 TOBE-like domain EP550_04590 PF00005 ABC transporter EP550_04595 PF00528 Binding-protein-dependent transport system inner membrane component EP550_04600 PF00528 Binding-protein-dependent transport system inner membrane component EP550_04615 PF01063 Amino-transferase class IV EP550_04620 PF02618 YceG-like family EP550_04625 PF02223 Thymidylate kinase EP550_04635 PF00890 FAD binding domain EP550_04635 PF02910 Fumarate reductase flavoprotein C-term EP550_04640 PF13180 PDZ domain EP550_04650 PF06421 GTP-binding protein LepA C-terminus EP550_04650 PF00009 Elongation factor Tu GTP binding domain EP550_04650 PF00679 Elongation factor G C-terminus EP550_04650 PF03144 Elongation factor Tu domain 2 EP550_04655 PF10502 Signal peptidase, peptidase S26 EP550_04665 PF00035 Double-stranded RNA binding motif EP550_04665 PF14622 Ribonuclease-III-like EP550_04670 PF01926 50S ribosome-binding GTPase EP550_04670 PF07650 KH domain EP550_04680 PF11967 Recombination protein O N terminal EP550_04680 PF02565 Recombination protein O C terminal EP550_04685 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EP550_04690 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EP550_04695 PF00106 short chain dehydrogenase EP550_04735 PF17151 Periplasmic sensor domain EP550_04735 PF00990 Diguanylate cyclase, GGDEF domain EP550_04745 PF17757 UvrB interaction domain EP550_04745 PF12344 Ultra-violet resistance protein B EP550_04745 PF00271 Helicase conserved C-terminal domain EP550_04745 PF04851 Type III restriction enzyme, res subunit EP550_04745 PF02151 UvrB/uvrC motif EP550_04755 PF00892 EamA-like transporter family EP550_04760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP550_04760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP550_04785 PF01926 50S ribosome-binding GTPase EP550_04785 PF01018 GTP1/OBG EP550_04790 PF00696 Amino acid kinase family EP550_04790 PF01472 PUA domain EP550_04800 PF07759 Protein of unknown function (DUF1615) EP550_04805 PF01207 Dihydrouridine synthase (Dus) EP550_04810 PF03060 Nitronate monooxygenase EP550_04825 PF02350 UDP-N-acetylglucosamine 2-epimerase EP550_04855 PF03441 FAD binding domain of DNA photolyase EP550_04855 PF00875 DNA photolyase EP550_04860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP550_04865 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_04870 PF07943 Penicillin-binding protein 5, C-terminal domain EP550_04870 PF00768 D-alanyl-D-alanine carboxypeptidase EP550_04880 PF03971 Monomeric isocitrate dehydrogenase EP550_04885 PF00849 RNA pseudouridylate synthase EP550_04890 PF00180 Isocitrate/isopropylmalate dehydrogenase EP550_04910 PF06779 Uncharacterised MFS-type transporter YbfB EP550_04915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_04915 PF03466 LysR substrate binding domain EP550_04925 PF02567 Phenazine biosynthesis-like protein EP550_04930 PF05193 Peptidase M16 inactive domain EP550_04930 PF00675 Insulinase (Peptidase family M16) EP550_04955 PF02581 Thiamine monophosphate synthase EP550_04960 PF00202 Aminotransferase class-III EP550_04970 PF00849 RNA pseudouridylate synthase EP550_04975 PF18339 RapA N-terminal Tudor like domain 1 EP550_04975 PF00176 SNF2 family N-terminal domain EP550_04975 PF12137 RNA polymerase recycling family C-terminal EP550_04975 PF00271 Helicase conserved C-terminal domain EP550_04975 PF18337 RapA N-terminal Tudor like domain EP550_04985 PF00440 Bacterial regulatory proteins, tetR family EP550_04990 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_04990 PF00970 Oxidoreductase FAD-binding domain EP550_04990 PF00175 Oxidoreductase NAD-binding domain EP550_04995 PF00487 Fatty acid desaturase EP550_05005 PF17754 MftR C-terminal domain EP550_05005 PF00440 Bacterial regulatory proteins, tetR family EP550_05015 PF00202 Aminotransferase class-III EP550_05020 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP550_05025 PF00171 Aldehyde dehydrogenase family EP550_05030 PF01037 Lrp/AsnC ligand binding domain EP550_05035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP550_05035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP550_05035 PF00205 Thiamine pyrophosphate enzyme, central domain EP550_05040 PF00324 Amino acid permease EP550_05045 PF12849 PBP superfamily domain EP550_05050 PF00528 Binding-protein-dependent transport system inner membrane component EP550_05055 PF00528 Binding-protein-dependent transport system inner membrane component EP550_05060 PF00005 ABC transporter EP550_05065 PF01343 Peptidase family S49 EP550_05065 PF08496 Peptidase family S49 N-terminal EP550_05080 PF00206 Lyase EP550_05080 PF08328 Adenylosuccinate lyase C-terminal EP550_05085 PF04356 Protein of unknown function (DUF489) EP550_05095 PF13344 Haloacid dehalogenase-like hydrolase EP550_05095 PF00293 NUDIX domain EP550_05100 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_05105 PF00768 D-alanyl-D-alanine carboxypeptidase EP550_05105 PF07943 Penicillin-binding protein 5, C-terminal domain EP550_05120 PF01975 Survival protein SurE EP550_05125 PF01551 Peptidase family M23 EP550_05125 PF01476 LysM domain EP550_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_05130 PF03466 LysR substrate binding domain EP550_05135 PF05362 Lon protease (S16) C-terminal proteolytic domain EP550_05135 PF13654 AAA domain EP550_05140 PF07690 Major Facilitator Superfamily EP550_05145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP550_05150 PF13593 SBF-like CPA transporter family (DUF4137) EP550_05155 PF01197 Ribosomal protein L31 EP550_05170 PF04055 Radical SAM superfamily EP550_05175 PF01132 Elongation factor P (EF-P) OB domain EP550_05175 PF09285 Elongation factor P, C-terminal EP550_05175 PF08207 Elongation factor P (EF-P) KOW-like domain EP550_05180 PF02554 Carbon starvation protein CstA EP550_05180 PF13722 5TM C-terminal transporter carbon starvation CstA EP550_05185 PF04328 Selenoprotein, putative EP550_05220 PF17853 GGDEF-like domain EP550_05220 PF13556 PucR C-terminal helix-turn-helix domain EP550_05220 PF06018 CodY GAF-like domain EP550_05235 PF00171 Aldehyde dehydrogenase family EP550_05240 PF00324 Amino acid permease EP550_05245 PF03466 LysR substrate binding domain EP550_05245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_05250 PF02028 BCCT, betaine/carnitine/choline family transporter EP550_05255 PF02028 BCCT, betaine/carnitine/choline family transporter EP550_05260 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP550_05260 PF00355 Rieske [2Fe-2S] domain EP550_05270 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_05270 PF18113 Rubredoxin binding C-terminal domain EP550_05275 PF01266 FAD dependent oxidoreductase EP550_05275 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP550_05295 PF00892 EamA-like transporter family EP550_05305 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system EP550_05310 PF00083 Sugar (and other) transporter EP550_05315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP550_05315 PF13378 Enolase C-terminal domain-like EP550_05320 PF08659 KR domain EP550_05320 PF02801 Beta-ketoacyl synthase, C-terminal domain EP550_05320 PF00698 Acyl transferase domain EP550_05320 PF00109 Beta-ketoacyl synthase, N-terminal domain EP550_05320 PF00550 Phosphopantetheine attachment site EP550_05320 PF08240 Alcohol dehydrogenase GroES-like domain EP550_05320 PF09277 Erythronolide synthase, docking EP550_05320 PF14765 Polyketide synthase dehydratase EP550_05320 PF16197 Ketoacyl-synthetase C-terminal extension EP550_05320 PF08990 Erythronolide synthase docking EP550_05325 PF00440 Bacterial regulatory proteins, tetR family EP550_05345 PF02678 Pirin EP550_05345 PF17954 Quercetinase C-terminal cupin domain EP550_05355 PF08348 YheO-like PAS domain EP550_05355 PF13309 HTH domain EP550_05365 PF13193 AMP-binding enzyme C-terminal domain EP550_05365 PF00501 AMP-binding enzyme EP550_05365 PF00668 Condensation domain EP550_05365 PF00550 Phosphopantetheine attachment site EP550_05370 PF13193 AMP-binding enzyme C-terminal domain EP550_05370 PF00975 Thioesterase domain EP550_05370 PF00550 Phosphopantetheine attachment site EP550_05370 PF00668 Condensation domain EP550_05370 PF00501 AMP-binding enzyme EP550_05375 PF01032 FecCD transport family EP550_05380 PF01032 FecCD transport family EP550_05385 PF00005 ABC transporter EP550_05390 PF01497 Periplasmic binding protein EP550_05395 PF07715 TonB-dependent Receptor Plug Domain EP550_05395 PF00593 TonB dependent receptor EP550_05410 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP550_05415 PF00668 Condensation domain EP550_05415 PF00550 Phosphopantetheine attachment site EP550_05415 PF00501 AMP-binding enzyme EP550_05420 PF00501 AMP-binding enzyme EP550_05420 PF13193 AMP-binding enzyme C-terminal domain EP550_05425 PF00857 Isochorismatase family EP550_05425 PF00550 Phosphopantetheine attachment site EP550_05430 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP550_05440 PF00664 ABC transporter transmembrane region EP550_05440 PF00005 ABC transporter EP550_05445 PF00664 ABC transporter transmembrane region EP550_05445 PF00005 ABC transporter EP550_05450 PF00975 Thioesterase domain EP550_05460 PF00425 chorismate binding enzyme EP550_05470 PF01208 Uroporphyrinogen decarboxylase (URO-D) EP550_05475 PF05675 Protein of unknown function (DUF817) EP550_05490 PF00144 Beta-lactamase EP550_05505 PF01799 [2Fe-2S] binding domain EP550_05505 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_05510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP550_05510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP550_05525 PF00218 Indole-3-glycerol phosphate synthase EP550_05530 PF00591 Glycosyl transferase family, a/b domain EP550_05530 PF02885 Glycosyl transferase family, helical bundle domain EP550_05535 PF00593 TonB dependent receptor EP550_05535 PF07715 TonB-dependent Receptor Plug Domain EP550_05540 PF01433 Peptidase family M1 domain EP550_05540 PF11838 ERAP1-like C-terminal domain EP550_05545 PF00117 Glutamine amidotransferase class-I EP550_05760 PF13005 zinc-finger binding domain of transposase IS66 EP550_05760 PF13817 IS66 C-terminal element EP550_05760 PF13007 Transposase C of IS166 homeodomain EP550_05760 PF03050 Transposase IS66 family EP550_05840 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP550_05850 PF13737 Transposase DDE domain EP550_05855 PF08019 Phosphoethanolamine transferase EptA/EptB EP550_05855 PF00884 Sulfatase EP550_05890 PF05195 Aminopeptidase P, N-terminal domain EP550_05890 PF00557 Metallopeptidase family M24 EP550_05895 PF01494 FAD binding domain EP550_05900 PF01494 FAD binding domain EP550_05910 PF13411 MerR HTH family regulatory protein EP550_05920 PF01810 LysE type translocator EP550_05925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_05925 PF03466 LysR substrate binding domain EP550_05935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP550_05940 PF02021 Uncharacterised protein family UPF0102 EP550_05945 PF04972 BON domain EP550_05955 PF00293 NUDIX domain EP550_05955 PF09297 NADH pyrophosphatase zinc ribbon domain EP550_05965 PF00929 Exonuclease EP550_05970 PF01464 Transglycosylase SLT domain EP550_05970 PF01464 Transglycosylase SLT domain EP550_05970 PF01476 LysM domain EP550_05970 PF01476 LysM domain EP550_05975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EP550_05980 PF00528 Binding-protein-dependent transport system inner membrane component EP550_05985 PF12911 N-terminal TM domain of oligopeptide transport permease C EP550_05985 PF00528 Binding-protein-dependent transport system inner membrane component EP550_05990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP550_05990 PF00005 ABC transporter EP550_05995 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_05995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP550_06000 PF00593 TonB dependent receptor EP550_06000 PF07715 TonB-dependent Receptor Plug Domain EP550_06010 PF00929 Exonuclease EP550_06015 PF01979 Amidohydrolase family EP550_06020 PF01590 GAF domain EP550_06020 PF00990 Diguanylate cyclase, GGDEF domain EP550_06020 PF00360 Phytochrome region EP550_06020 PF00563 EAL domain EP550_06025 PF00764 Arginosuccinate synthase EP550_06030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP550_06030 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_06045 PF05987 Bacterial protein of unknown function (DUF898) EP550_06050 PF03180 NLPA lipoprotein EP550_06065 PF04717 Type VI secretion system, phage-baseplate injector EP550_06065 PF16671 Actin cross-linking domain EP550_06075 PF13610 DDE domain EP550_06085 PF17932 Tetracyclin repressor-like, C-terminal domain EP550_06085 PF00440 Bacterial regulatory proteins, tetR family EP550_06090 PF17954 Quercetinase C-terminal cupin domain EP550_06090 PF02678 Pirin EP550_06100 PF00665 Integrase core domain EP550_06100 PF13936 Helix-turn-helix domain EP550_06105 PF00106 short chain dehydrogenase EP550_06110 PF00743 Flavin-binding monooxygenase-like EP550_06120 PF00860 Permease family EP550_06125 PF00962 Adenosine/AMP deaminase EP550_06130 PF01292 Prokaryotic cytochrome b561 EP550_06140 PF01351 Ribonuclease HII EP550_06145 PF02599 Global regulator protein family EP550_06150 PF13840 ACT domain EP550_06150 PF01842 ACT domain EP550_06150 PF00696 Amino acid kinase family EP550_06155 PF02272 DHHA1 domain EP550_06155 PF01411 tRNA synthetases class II (A) EP550_06155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP550_06160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP550_06160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP550_06165 PF13393 Histidyl-tRNA synthetase EP550_06170 PF00709 Adenylosuccinate synthetase EP550_06185 PF00248 Aldo/keto reductase family EP550_06190 PF13545 Crp-like helix-turn-helix domain EP550_06190 PF00027 Cyclic nucleotide-binding domain EP550_06195 PF02566 OsmC-like protein EP550_06210 PF00004 ATPase family associated with various cellular activities (AAA) EP550_06210 PF10431 C-terminal, D2-small domain, of ClpB protein EP550_06210 PF02861 Clp amino terminal domain, pathogenicity island component EP550_06210 PF17871 AAA lid domain EP550_06210 PF07724 AAA domain (Cdc48 subfamily) EP550_06225 PF02926 THUMP domain EP550_06225 PF01170 Putative RNA methylase family UPF0020 EP550_06225 PF10672 S-adenosylmethionine-dependent methyltransferase EP550_06235 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP550_06235 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP550_06240 PF01979 Amidohydrolase family EP550_06245 PF00691 OmpA family EP550_06245 PF13488 Glycine zipper EP550_06255 PF00043 Glutathione S-transferase, C-terminal domain EP550_06255 PF13417 Glutathione S-transferase, N-terminal domain EP550_06260 PF02390 Putative methyltransferase EP550_06270 PF02798 Glutathione S-transferase, N-terminal domain EP550_06270 PF00043 Glutathione S-transferase, C-terminal domain EP550_06280 PF13192 Thioredoxin domain EP550_06280 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_06300 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP550_06300 PF00578 AhpC/TSA family EP550_06305 PF00270 DEAD/DEAH box helicase EP550_06305 PF11898 Domain of unknown function (DUF3418) EP550_06305 PF04408 Helicase associated domain (HA2) EP550_06305 PF00271 Helicase conserved C-terminal domain EP550_06305 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EP550_06310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP550_06310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP550_06320 PF07690 Major Facilitator Superfamily EP550_06325 PF03594 Benzoate membrane transport protein EP550_06330 PF00106 short chain dehydrogenase EP550_06335 PF00175 Oxidoreductase NAD-binding domain EP550_06335 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_06335 PF00970 Oxidoreductase FAD-binding domain EP550_06340 PF00866 Ring hydroxylating beta subunit EP550_06345 PF00355 Rieske [2Fe-2S] domain EP550_06345 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP550_06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_06350 PF03466 LysR substrate binding domain EP550_06360 PF00403 Heavy-metal-associated domain EP550_06365 PF00376 MerR family regulatory protein EP550_06365 PF09278 MerR, DNA binding EP550_06385 PF13737 Transposase DDE domain EP550_06415 PF02601 Exonuclease VII, large subunit EP550_06415 PF13742 OB-fold nucleic acid binding domain EP550_06450 PF01810 LysE type translocator EP550_06455 PF00313 'Cold-shock' DNA-binding domain EP550_06465 PF03807 NADP oxidoreductase coenzyme F420-dependent EP550_06465 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP550_06495 PF07690 Major Facilitator Superfamily EP550_06500 PF01638 HxlR-like helix-turn-helix EP550_06515 PF13936 Helix-turn-helix domain EP550_06515 PF00665 Integrase core domain EP550_06535 PF09190 DALR domain EP550_06535 PF01406 tRNA synthetases class I (C) catalytic domain EP550_06540 PF00571 CBS domain EP550_06540 PF01380 SIS domain EP550_06555 PF03968 OstA-like protein EP550_06560 PF00005 ABC transporter EP550_06560 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP550_06565 PF02321 Outer membrane efflux protein EP550_06570 PF00664 ABC transporter transmembrane region EP550_06570 PF03412 Peptidase C39 family EP550_06570 PF00005 ABC transporter EP550_06580 PF01205 Uncharacterized protein family UPF0029 EP550_06585 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_06595 PF01596 O-methyltransferase EP550_06605 PF11953 Domain of unknown function (DUF3470) EP550_06605 PF00037 4Fe-4S binding domain EP550_06615 PF05190 MutS family domain IV EP550_06615 PF00488 MutS domain V EP550_06615 PF05188 MutS domain II EP550_06615 PF01624 MutS domain I EP550_06615 PF05192 MutS domain III EP550_06620 PF01037 Lrp/AsnC ligand binding domain EP550_06625 PF00892 EamA-like transporter family EP550_06630 PF00563 EAL domain EP550_06630 PF00990 Diguanylate cyclase, GGDEF domain EP550_06630 PF03707 Bacterial signalling protein N terminal repeat EP550_06635 PF03279 Bacterial lipid A biosynthesis acyltransferase EP550_06650 PF07690 Major Facilitator Superfamily EP550_06670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP550_06670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP550_06690 PF13419 Haloacid dehalogenase-like hydrolase EP550_06705 PF16671 Actin cross-linking domain EP550_06705 PF04717 Type VI secretion system, phage-baseplate injector EP550_06710 PF14220 Domain of unknown function (DUF4329) EP550_06710 PF03527 RHS protein EP550_06710 PF05593 RHS Repeat EP550_06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_06725 PF03466 LysR substrate binding domain EP550_06730 PF01566 Natural resistance-associated macrophage protein EP550_06735 PF03746 LamB/YcsF family EP550_06740 PF07286 Protein of unknown function (DUF1445) EP550_06750 PF00289 Biotin carboxylase, N-terminal domain EP550_06750 PF02785 Biotin carboxylase C-terminal domain EP550_06750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP550_06750 PF00364 Biotin-requiring enzyme EP550_06755 PF00654 Voltage gated chloride channel EP550_06770 PF13737 Transposase DDE domain EP550_06785 PF00440 Bacterial regulatory proteins, tetR family EP550_06820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP550_06820 PF02785 Biotin carboxylase C-terminal domain EP550_06820 PF00289 Biotin carboxylase, N-terminal domain EP550_06825 PF02525 Flavodoxin-like fold EP550_06845 PF08753 NikR C terminal nickel binding domain EP550_06845 PF01402 Ribbon-helix-helix protein, copG family EP550_06850 PF01425 Amidase EP550_06855 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP550_06860 PF00005 ABC transporter EP550_06935 PF01389 OmpA-like transmembrane domain EP550_06935 PF00691 OmpA family EP550_06945 PF00004 ATPase family associated with various cellular activities (AAA) EP550_06945 PF10431 C-terminal, D2-small domain, of ClpB protein EP550_06945 PF07724 AAA domain (Cdc48 subfamily) EP550_06945 PF17871 AAA lid domain EP550_06975 PF03466 LysR substrate binding domain EP550_06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_06985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP550_06990 PF07690 Major Facilitator Superfamily EP550_07005 PF02677 Epoxyqueuosine reductase QueH EP550_07015 PF00376 MerR family regulatory protein EP550_07015 PF09278 MerR, DNA binding EP550_07030 PF00701 Dihydrodipicolinate synthetase family EP550_07040 PF00392 Bacterial regulatory proteins, gntR family EP550_07045 PF05544 Proline racemase EP550_07050 PF01266 FAD dependent oxidoreductase EP550_07060 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_07060 PF04324 BFD-like [2Fe-2S] binding domain EP550_07070 PF00083 Sugar (and other) transporter EP550_07075 PF00171 Aldehyde dehydrogenase family EP550_07080 PF13520 Amino acid permease EP550_07085 PF03315 Serine dehydratase beta chain EP550_07085 PF03313 Serine dehydratase alpha chain EP550_07090 PF00171 Aldehyde dehydrogenase family EP550_07090 PF01575 MaoC like domain EP550_07095 PF05138 Phenylacetic acid catabolic protein EP550_07100 PF06243 Phenylacetic acid degradation B EP550_07105 PF05138 Phenylacetic acid catabolic protein EP550_07110 PF01883 Iron-sulfur cluster assembly protein EP550_07115 PF00175 Oxidoreductase NAD-binding domain EP550_07115 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_07115 PF00970 Oxidoreductase FAD-binding domain EP550_07120 PF00378 Enoyl-CoA hydratase/isomerase EP550_07125 PF00378 Enoyl-CoA hydratase/isomerase EP550_07130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP550_07130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP550_07130 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP550_07135 PF02803 Thiolase, C-terminal domain EP550_07135 PF00108 Thiolase, N-terminal domain EP550_07140 PF14535 AMP-binding enzyme C-terminal domain EP550_07140 PF00501 AMP-binding enzyme EP550_07145 PF08223 PaaX-like protein C-terminal domain EP550_07145 PF07848 PaaX-like protein EP550_07150 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_07155 PF03061 Thioesterase superfamily EP550_07165 PF12344 Ultra-violet resistance protein B EP550_07165 PF04851 Type III restriction enzyme, res subunit EP550_07165 PF00271 Helicase conserved C-terminal domain EP550_07165 PF02151 UvrB/uvrC motif EP550_07165 PF17757 UvrB interaction domain EP550_07205 PF00313 'Cold-shock' DNA-binding domain EP550_07215 PF12833 Helix-turn-helix domain EP550_07215 PF06719 AraC-type transcriptional regulator N-terminus EP550_07225 PF13610 DDE domain EP550_07230 PF00239 Resolvase, N terminal domain EP550_07230 PF02796 Helix-turn-helix domain of resolvase EP550_07240 PF00589 Phage integrase family EP550_07240 PF13495 Phage integrase, N-terminal SAM-like domain EP550_07245 PF10706 Aminoglycoside-2''-adenylyltransferase EP550_07250 PF13427 Domain of unknown function (DUF4111) EP550_07250 PF01909 Nucleotidyltransferase domain EP550_07255 PF00893 Small Multidrug Resistance protein EP550_07260 PF00809 Pterin binding enzyme EP550_07275 PF01695 IstB-like ATP binding protein EP550_07285 PF13610 DDE domain EP550_07295 PF09339 IclR helix-turn-helix domain EP550_07295 PF01614 Bacterial transcriptional regulator EP550_07300 PF01494 FAD binding domain EP550_07305 PF07702 UTRA domain EP550_07305 PF00392 Bacterial regulatory proteins, gntR family EP550_07315 PF08402 TOBE domain EP550_07315 PF00005 ABC transporter EP550_07320 PF00528 Binding-protein-dependent transport system inner membrane component EP550_07325 PF01266 FAD dependent oxidoreductase EP550_07330 PF00266 Aminotransferase class-V EP550_07335 PF13419 Haloacid dehalogenase-like hydrolase EP550_07340 PF07690 Major Facilitator Superfamily EP550_07345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_07345 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_07345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_07350 PF02515 CoA-transferase family III EP550_07355 PF09339 IclR helix-turn-helix domain EP550_07360 PF00378 Enoyl-CoA hydratase/isomerase EP550_07365 PF03060 Nitronate monooxygenase EP550_07370 PF07690 Major Facilitator Superfamily EP550_07375 PF09339 IclR helix-turn-helix domain EP550_07380 PF00108 Thiolase, N-terminal domain EP550_07380 PF02803 Thiolase, C-terminal domain EP550_07385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP550_07385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP550_07385 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP550_07395 PF00378 Enoyl-CoA hydratase/isomerase EP550_07400 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_07400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_07400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_07405 PF07690 Major Facilitator Superfamily EP550_07410 PF01144 Coenzyme A transferase EP550_07415 PF01144 Coenzyme A transferase EP550_07425 PF07690 Major Facilitator Superfamily EP550_07435 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP550_07435 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_07435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_07435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07450 PF03466 LysR substrate binding domain EP550_07455 PF00682 HMGL-like EP550_07460 PF00289 Biotin carboxylase, N-terminal domain EP550_07460 PF00364 Biotin-requiring enzyme EP550_07460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP550_07460 PF02785 Biotin carboxylase C-terminal domain EP550_07465 PF00378 Enoyl-CoA hydratase/isomerase EP550_07470 PF01039 Carboxyl transferase domain EP550_07475 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_07475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_07475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_07480 PF00440 Bacterial regulatory proteins, tetR family EP550_07485 PF13193 AMP-binding enzyme C-terminal domain EP550_07485 PF00501 AMP-binding enzyme EP550_07505 PF03466 LysR substrate binding domain EP550_07505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07535 PF00994 Probable molybdopterin binding domain EP550_07535 PF18146 Damage-inducible protein CinA KH domain EP550_07535 PF02464 Competence-damaged protein EP550_07545 PF06628 Catalase-related immune-responsive EP550_07545 PF00199 Catalase EP550_07545 PF18011 C-terminal domain found in long catalases EP550_07570 PF00717 Peptidase S24-like EP550_07580 PF13404 AsnC-type helix-turn-helix domain EP550_07580 PF01037 Lrp/AsnC ligand binding domain EP550_07590 PF00512 His Kinase A (phospho-acceptor) domain EP550_07590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_07590 PF00072 Response regulator receiver domain EP550_07590 PF09308 LuxQ, periplasmic EP550_07595 PF00072 Response regulator receiver domain EP550_07610 PF00528 Binding-protein-dependent transport system inner membrane component EP550_07615 PF00528 Binding-protein-dependent transport system inner membrane component EP550_07620 PF00005 ABC transporter EP550_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP550_07630 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP550_07640 PF03466 LysR substrate binding domain EP550_07640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07645 PF01810 LysE type translocator EP550_07655 PF00266 Aminotransferase class-V EP550_07665 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_07670 PF00581 Rhodanese-like domain EP550_07680 PF03466 LysR substrate binding domain EP550_07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07685 PF02798 Glutathione S-transferase, N-terminal domain EP550_07690 PF02798 Glutathione S-transferase, N-terminal domain EP550_07690 PF14834 Glutathione S-transferase, C-terminal domain EP550_07695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07695 PF03466 LysR substrate binding domain EP550_07700 PF03788 LrgA family EP550_07705 PF04172 LrgB-like family EP550_07710 PF00155 Aminotransferase class I and II EP550_07710 PF00392 Bacterial regulatory proteins, gntR family EP550_07725 PF07690 Major Facilitator Superfamily EP550_07730 PF16957 Malonate decarboxylase, alpha subunit, transporter EP550_07735 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase EP550_07740 PF06857 Malonate decarboxylase delta subunit (MdcD) EP550_07745 PF01039 Carboxyl transferase domain EP550_07755 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG EP550_07760 PF00698 Acyl transferase domain EP550_07775 PF03466 LysR substrate binding domain EP550_07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07780 PF00392 Bacterial regulatory proteins, gntR family EP550_07780 PF00155 Aminotransferase class I and II EP550_07790 PF02322 Cytochrome bd terminal oxidase subunit II EP550_07795 PF01654 Cytochrome bd terminal oxidase subunit I EP550_07810 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP550_07810 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_07810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_07815 PF00296 Luciferase-like monooxygenase EP550_07820 PF00083 Sugar (and other) transporter EP550_07840 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP550_07845 PF00005 ABC transporter EP550_07850 PF00528 Binding-protein-dependent transport system inner membrane component EP550_07855 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP550_07860 PF01177 Asp/Glu/Hydantoin racemase EP550_07865 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP550_07875 PF03466 LysR substrate binding domain EP550_07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07885 PF01979 Amidohydrolase family EP550_07885 PF13382 Adenine deaminase C-terminal domain EP550_07895 PF03960 ArsC family EP550_07900 PF01022 Bacterial regulatory protein, arsR family EP550_07905 PF01758 Sodium Bile acid symporter family EP550_07910 PF03466 LysR substrate binding domain EP550_07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_07925 PF13192 Thioredoxin domain EP550_07925 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_07940 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_07945 PF00588 SpoU rRNA Methylase family EP550_07950 PF01336 OB-fold nucleic acid binding domain EP550_07950 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP550_07950 PF14579 Helix-hairpin-helix motif EP550_07950 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP550_07950 PF02811 PHP domain EP550_07955 PF00710 Asparaginase, N-terminal EP550_07955 PF17763 Glutaminase/Asparaginase C-terminal domain EP550_07960 PF00375 Sodium:dicarboxylate symporter family EP550_07965 PF13737 Transposase DDE domain EP550_07970 PF00155 Aminotransferase class I and II EP550_07975 PF01641 SelR domain EP550_07980 PF00255 Glutathione peroxidase EP550_07985 PF12833 Helix-turn-helix domain EP550_07985 PF12852 Cupin EP550_07995 PF00155 Aminotransferase class I and II EP550_08000 PF08335 GlnD PII-uridylyltransferase EP550_08000 PF01966 HD domain EP550_08000 PF01909 Nucleotidyltransferase domain EP550_08005 PF02222 ATP-grasp domain EP550_08015 PF05437 Branched-chain amino acid transport protein (AzlD) EP550_08020 PF03591 AzlC protein EP550_08045 PF01926 50S ribosome-binding GTPase EP550_08045 PF06071 Protein of unknown function (DUF933) EP550_08050 PF00528 Binding-protein-dependent transport system inner membrane component EP550_08055 PF09383 NIL domain EP550_08055 PF00005 ABC transporter EP550_08060 PF03180 NLPA lipoprotein EP550_08065 PF03180 NLPA lipoprotein EP550_08070 PF00296 Luciferase-like monooxygenase EP550_08080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_08080 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP550_08095 PF00528 Binding-protein-dependent transport system inner membrane component EP550_08100 PF00528 Binding-protein-dependent transport system inner membrane component EP550_08105 PF00005 ABC transporter EP550_08115 PF01037 Lrp/AsnC ligand binding domain EP550_08120 PF01709 Transcriptional regulator EP550_08130 PF00440 Bacterial regulatory proteins, tetR family EP550_08150 PF13737 Transposase DDE domain EP550_08160 PF03466 LysR substrate binding domain EP550_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_08170 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP550_08180 PF00892 EamA-like transporter family EP550_08210 PF13954 PapC N-terminal domain EP550_08210 PF13953 PapC C-terminal domain EP550_08210 PF00577 Outer membrane usher protein EP550_08215 PF02753 Pili assembly chaperone PapD, C-terminal domain EP550_08215 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP550_08220 PF16970 Type-1 fimbrial protein, A EP550_08235 PF06968 Biotin and Thiamin Synthesis associated domain EP550_08235 PF04055 Radical SAM superfamily EP550_08240 PF08331 Domain of unknown function (DUF1730) EP550_08245 PF03853 YjeF-related protein N-terminus EP550_08245 PF01256 Carbohydrate kinase EP550_08250 PF02075 Crossover junction endodeoxyribonuclease RuvC EP550_08265 PF00905 Penicillin binding protein transpeptidase domain EP550_08290 PF02772 S-adenosylmethionine synthetase, central domain EP550_08290 PF00438 S-adenosylmethionine synthetase, N-terminal domain EP550_08290 PF02773 S-adenosylmethionine synthetase, C-terminal domain EP550_08295 PF00456 Transketolase, thiamine diphosphate binding domain EP550_08295 PF02780 Transketolase, C-terminal domain EP550_08295 PF02779 Transketolase, pyrimidine binding domain EP550_08305 PF04264 YceI-like domain EP550_08315 PF09992 Phosphodiester glycosidase EP550_08325 PF05958 tRNA (Uracil-5-)-methyltransferase EP550_08330 PF04229 GrpB protein EP550_08335 PF00171 Aldehyde dehydrogenase family EP550_08335 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EP550_08335 PF14850 DNA-binding domain of Proline dehydrogenase EP550_08335 PF01619 Proline dehydrogenase EP550_08340 PF01037 Lrp/AsnC ligand binding domain EP550_08345 PF00474 Sodium:solute symporter family EP550_08350 PF02146 Sir2 family EP550_08355 PF01597 Glycine cleavage H-protein EP550_08360 PF12833 Helix-turn-helix domain EP550_08360 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP550_08370 PF00005 ABC transporter EP550_08370 PF00664 ABC transporter transmembrane region EP550_08375 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EP550_08380 PF06912 Protein of unknown function (DUF1275) EP550_08385 PF00375 Sodium:dicarboxylate symporter family EP550_08400 PF08007 Cupin superfamily protein EP550_08405 PF02545 Maf-like protein EP550_08415 PF00162 Phosphoglycerate kinase EP550_08425 PF01116 Fructose-bisphosphate aldolase class-II EP550_08430 PF00639 PPIC-type PPIASE domain EP550_08430 PF09312 SurA N-terminal domain EP550_08435 PF03968 OstA-like protein EP550_08435 PF04453 LPS transport system D EP550_08440 PF01636 Phosphotransferase enzyme family EP550_08445 PF00483 Nucleotidyl transferase EP550_08450 PF02527 rRNA small subunit methyltransferase G EP550_08455 PF13614 AAA domain EP550_08460 PF02195 ParB-like nuclease domain EP550_08460 PF17762 HTH domain found in ParB protein EP550_08465 PF01618 MotA/TolQ/ExbB proton channel family EP550_08475 PF00664 ABC transporter transmembrane region EP550_08475 PF00005 ABC transporter EP550_08480 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EP550_08485 PF02348 Cytidylyltransferase EP550_08490 PF09115 DNA polymerase III, delta subunit, C terminal EP550_08500 PF01026 TatD related DNase EP550_08515 PF07963 Prokaryotic N-terminal methylation motif EP550_08515 PF02501 Type II secretion system (T2SS), protein I EP550_08520 PF07963 Prokaryotic N-terminal methylation motif EP550_08520 PF11612 Type II secretion system (T2SS), protein J EP550_08525 PF03934 Type II secretion system (T2SS), protein K EP550_08535 PF03167 Uracil DNA glycosylase superfamily EP550_08545 PF14437 MafB19-like deaminase EP550_08555 PF02224 Cytidylate kinase EP550_08560 PF00575 S1 RNA binding domain EP550_08565 PF00216 Bacterial DNA-binding protein EP550_08575 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EP550_08585 PF00743 Flavin-binding monooxygenase-like EP550_08595 PF03969 AFG1-like ATPase EP550_08600 PF02899 Phage integrase, N-terminal SAM-like domain EP550_08600 PF00589 Phage integrase family EP550_08665 PF03796 DnaB-like helicase C terminal domain EP550_08665 PF00772 DnaB-like helicase N terminal domain EP550_08740 PF04860 Phage portal protein EP550_08795 PF01551 Peptidase family M23 EP550_08795 PF10145 Phage-related minor tail protein EP550_08795 PF01464 Transglycosylase SLT domain EP550_08850 PF01274 Malate synthase EP550_08860 PF02472 Biopolymer transport protein ExbD/TolR EP550_08865 PF02472 Biopolymer transport protein ExbD/TolR EP550_08870 PF01618 MotA/TolQ/ExbB proton channel family EP550_08880 PF07715 TonB-dependent Receptor Plug Domain EP550_08880 PF00593 TonB dependent receptor EP550_08900 PF01432 Peptidase family M3 EP550_08905 PF00528 Binding-protein-dependent transport system inner membrane component EP550_08910 PF00528 Binding-protein-dependent transport system inner membrane component EP550_08915 PF00005 ABC transporter EP550_08915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP550_08930 PF00459 Inositol monophosphatase family EP550_08940 PF01649 Ribosomal protein S20 EP550_08945 PF13460 NAD(P)H-binding EP550_08950 PF03737 Aldolase/RraA EP550_08970 PF02559 CarD-like/TRCF domain EP550_08970 PF00270 DEAD/DEAH box helicase EP550_08970 PF00271 Helicase conserved C-terminal domain EP550_08970 PF03461 TRCF domain EP550_08970 PF17757 UvrB interaction domain EP550_08980 PF00211 Adenylate and Guanylate cyclase catalytic domain EP550_08985 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_08990 PF00012 Hsp70 protein EP550_08995 PF00226 DnaJ domain EP550_08995 PF07743 HSCB C-terminal oligomerisation domain EP550_09000 PF01521 Iron-sulphur cluster biosynthesis EP550_09005 PF01592 NifU-like N terminal domain EP550_09010 PF00266 Aminotransferase class-V EP550_09015 PF02082 Transcriptional regulator EP550_09030 PF00216 Bacterial DNA-binding protein EP550_09035 PF09312 SurA N-terminal domain EP550_09035 PF00639 PPIC-type PPIASE domain EP550_09040 PF12852 Cupin EP550_09040 PF12833 Helix-turn-helix domain EP550_09045 PF00487 Fatty acid desaturase EP550_09050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_09050 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_09050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_09055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_09055 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_09055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_09060 PF03109 ABC1 family EP550_09070 PF04073 Aminoacyl-tRNA editing domain EP550_09075 PF04183 IucA / IucC family EP550_09075 PF06276 Ferric iron reductase FhuF-like transporter EP550_09080 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP550_09085 PF07690 Major Facilitator Superfamily EP550_09090 PF04183 IucA / IucC family EP550_09090 PF06276 Ferric iron reductase FhuF-like transporter EP550_09095 PF06276 Ferric iron reductase FhuF-like transporter EP550_09095 PF04183 IucA / IucC family EP550_09110 PF00593 TonB dependent receptor EP550_09110 PF07715 TonB-dependent Receptor Plug Domain EP550_09150 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EP550_09155 PF02277 Phosphoribosyltransferase EP550_09170 PF02654 Cobalamin-5-phosphate synthase EP550_09175 PF00793 DAHP synthetase I family EP550_09180 PF01925 Sulfite exporter TauE/SafE EP550_09200 PF07715 TonB-dependent Receptor Plug Domain EP550_09200 PF00593 TonB dependent receptor EP550_09205 PF02684 Lipid-A-disaccharide synthetase EP550_09215 PF13005 zinc-finger binding domain of transposase IS66 EP550_09215 PF13007 Transposase C of IS166 homeodomain EP550_09215 PF13817 IS66 C-terminal element EP550_09215 PF03050 Transposase IS66 family EP550_09235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_09240 PF00005 ABC transporter EP550_09275 PF01230 HIT domain EP550_09305 PF08241 Methyltransferase domain EP550_09310 PF00561 alpha/beta hydrolase fold EP550_09315 PF01053 Cys/Met metabolism PLP-dependent enzyme EP550_09325 PF02575 YbaB/EbfC DNA-binding family EP550_09330 PF13662 Toprim domain EP550_09330 PF02132 RecR protein EP550_09335 PF00570 HRDC domain EP550_09335 PF01612 3'-5' exonuclease EP550_09355 PF05166 YcgL domain EP550_09365 PF17862 AAA+ lid domain EP550_09365 PF01434 Peptidase family M41 EP550_09365 PF00004 ATPase family associated with various cellular activities (AAA) EP550_09375 PF00291 Pyridoxal-phosphate dependent enzyme EP550_09380 PF05175 Methyltransferase small domain EP550_09385 PF01264 Chorismate synthase EP550_09405 PF04055 Radical SAM superfamily EP550_09410 PF00676 Dehydrogenase E1 component EP550_09415 PF02779 Transketolase, pyrimidine binding domain EP550_09415 PF02780 Transketolase, C-terminal domain EP550_09420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP550_09420 PF00364 Biotin-requiring enzyme EP550_09420 PF02817 e3 binding domain EP550_09425 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_09425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP550_09430 PF00106 short chain dehydrogenase EP550_09435 PF00107 Zinc-binding dehydrogenase EP550_09435 PF08240 Alcohol dehydrogenase GroES-like domain EP550_09440 PF01062 Bestrophin, RFP-TM, chloride channel EP550_09445 PF00072 Response regulator receiver domain EP550_09445 PF00158 Sigma-54 interaction domain EP550_09445 PF02954 Bacterial regulatory protein, Fis family EP550_09450 PF00753 Metallo-beta-lactamase superfamily EP550_09450 PF04273 Putative phosphatase (DUF442) EP550_09455 PF04273 Putative phosphatase (DUF442) EP550_09455 PF00753 Metallo-beta-lactamase superfamily EP550_09460 PF01925 Sulfite exporter TauE/SafE EP550_09475 PF12833 Helix-turn-helix domain EP550_09475 PF06445 GyrI-like small molecule binding domain EP550_09480 PF01638 HxlR-like helix-turn-helix EP550_09485 PF02525 Flavodoxin-like fold EP550_09510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP550_09515 PF00528 Binding-protein-dependent transport system inner membrane component EP550_09520 PF00005 ABC transporter EP550_09535 PF00083 Sugar (and other) transporter EP550_09540 PF00593 TonB dependent receptor EP550_09540 PF07715 TonB-dependent Receptor Plug Domain EP550_09545 PF10415 Fumarase C C-terminus EP550_09545 PF00206 Lyase EP550_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_09560 PF03466 LysR substrate binding domain EP550_09565 PF03466 LysR substrate binding domain EP550_09565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_09570 PF02803 Thiolase, C-terminal domain EP550_09570 PF00108 Thiolase, N-terminal domain EP550_09575 PF02667 Short chain fatty acid transporter EP550_09580 PF01144 Coenzyme A transferase EP550_09585 PF01144 Coenzyme A transferase EP550_09590 PF03466 LysR substrate binding domain EP550_09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_09610 PF12833 Helix-turn-helix domain EP550_09610 PF06719 AraC-type transcriptional regulator N-terminus EP550_09615 PF07690 Major Facilitator Superfamily EP550_09620 PF01738 Dienelactone hydrolase family EP550_09635 PF01613 Flavin reductase like domain EP550_09650 PF00175 Oxidoreductase NAD-binding domain EP550_09650 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_09650 PF00970 Oxidoreductase FAD-binding domain EP550_09655 PF00866 Ring hydroxylating beta subunit EP550_09660 PF00355 Rieske [2Fe-2S] domain EP550_09660 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP550_09665 PF03459 TOBE domain EP550_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_09675 PF00528 Binding-protein-dependent transport system inner membrane component EP550_09680 PF03459 TOBE domain EP550_09680 PF00005 ABC transporter EP550_09685 PF00106 short chain dehydrogenase EP550_09690 PF00857 Isochorismatase family EP550_09690 PF00550 Phosphopantetheine attachment site EP550_09700 PF00149 Calcineurin-like phosphoesterase EP550_09705 PF13090 Polyphosphate kinase C-terminal domain 2 EP550_09705 PF02503 Polyphosphate kinase middle domain EP550_09705 PF13089 Polyphosphate kinase N-terminal domain EP550_09705 PF17941 Polyphosphate kinase C-terminal domain 1 EP550_09710 PF08042 PqqA family EP550_09715 PF12706 Beta-lactamase superfamily domain EP550_09720 PF03070 TENA/THI-4/PQQC family EP550_09725 PF05402 Coenzyme PQQ synthesis protein D (PqqD) EP550_09730 PF13186 Iron-sulfur cluster-binding domain EP550_09730 PF04055 Radical SAM superfamily EP550_09735 PF01244 Membrane dipeptidase (Peptidase family M19) EP550_09770 PF13091 PLD-like domain EP550_09785 PF00199 Catalase EP550_09795 PF00107 Zinc-binding dehydrogenase EP550_09795 PF08240 Alcohol dehydrogenase GroES-like domain EP550_09805 PF00419 Fimbrial protein EP550_09810 PF00577 Outer membrane usher protein EP550_09810 PF13954 PapC N-terminal domain EP550_09810 PF13953 PapC C-terminal domain EP550_09815 PF02753 Pili assembly chaperone PapD, C-terminal domain EP550_09815 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP550_09820 PF16970 Type-1 fimbrial protein, A EP550_09840 PF01266 FAD dependent oxidoreductase EP550_09855 PF01593 Flavin containing amine oxidoreductase EP550_09860 PF00743 Flavin-binding monooxygenase-like EP550_09865 PF12146 Serine aminopeptidase, S33 EP550_09870 PF02321 Outer membrane efflux protein EP550_09875 PF00873 AcrB/AcrD/AcrF family EP550_09880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_09880 PF00529 HlyD membrane-fusion protein of T1SS EP550_09885 PF00072 Response regulator receiver domain EP550_09885 PF00486 Transcriptional regulatory protein, C terminal EP550_09890 PF00672 HAMP domain EP550_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_09890 PF16527 Two-component sensor protein CpxA, periplasmic domain EP550_09890 PF00512 His Kinase A (phospho-acceptor) domain EP550_09900 PF12833 Helix-turn-helix domain EP550_09900 PF02311 AraC-like ligand binding domain EP550_09905 PF12146 Serine aminopeptidase, S33 EP550_09960 PF04607 Region found in RelA / SpoT proteins EP550_09960 PF02824 TGS domain EP550_09960 PF13291 ACT domain EP550_09970 PF01975 Survival protein SurE EP550_09995 PF07690 Major Facilitator Superfamily EP550_10000 PF13533 Biotin-lipoyl like EP550_10005 PF01425 Amidase EP550_10010 PF00196 Bacterial regulatory proteins, luxR family EP550_10085 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP550_10090 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP550_10090 PF14572 Phosphoribosyl synthetase-associated domain EP550_10110 PF00005 ABC transporter EP550_10125 PF00107 Zinc-binding dehydrogenase EP550_10125 PF08240 Alcohol dehydrogenase GroES-like domain EP550_10140 PF06719 AraC-type transcriptional regulator N-terminus EP550_10140 PF12833 Helix-turn-helix domain EP550_10145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP550_10145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP550_10150 PF07690 Major Facilitator Superfamily EP550_10155 PF01370 NAD dependent epimerase/dehydratase family EP550_10160 PF03466 LysR substrate binding domain EP550_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_10170 PF00920 Dehydratase family EP550_10175 PF00171 Aldehyde dehydrogenase family EP550_10190 PF00529 HlyD membrane-fusion protein of T1SS EP550_10190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_10210 PF03737 Aldolase/RraA EP550_10215 PF01842 ACT domain EP550_10215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP550_10215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP550_10220 PF07690 Major Facilitator Superfamily EP550_10240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_10240 PF03466 LysR substrate binding domain EP550_10250 PF08450 SMP-30/Gluconolactonase/LRE-like region EP550_10265 PF04909 Amidohydrolase EP550_10270 PF07690 Major Facilitator Superfamily EP550_10285 PF13332 Hemagglutinin repeat EP550_10285 PF04829 Pre-toxin domain with VENN motif EP550_10285 PF05860 haemagglutination activity domain EP550_10285 PF13018 Extended Signal Peptide of Type V secretion system EP550_10290 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EP550_10290 PF17287 POTRA domain EP550_10290 PF08479 POTRA domain, ShlB-type EP550_10305 PF07687 Peptidase dimerisation domain EP550_10305 PF01546 Peptidase family M20/M25/M40 EP550_10315 PF00999 Sodium/hydrogen exchanger family EP550_10315 PF02254 TrkA-N domain EP550_10320 PF07995 Glucose / Sorbosone dehydrogenase EP550_10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_10325 PF03466 LysR substrate binding domain EP550_10330 PF00857 Isochorismatase family EP550_10340 PF13737 Transposase DDE domain EP550_10350 PF08359 YsiA-like protein, C-terminal region EP550_10350 PF00440 Bacterial regulatory proteins, tetR family EP550_10355 PF12706 Beta-lactamase superfamily domain EP550_10365 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_10375 PF00376 MerR family regulatory protein EP550_10375 PF09278 MerR, DNA binding EP550_10380 PF01872 RibD C-terminal domain EP550_10385 PF00106 short chain dehydrogenase EP550_10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_10390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP550_10395 PF01047 MarR family EP550_10400 PF07859 alpha/beta hydrolase fold EP550_10420 PF00199 Catalase EP550_10420 PF06628 Catalase-related immune-responsive EP550_10425 PF00561 alpha/beta hydrolase fold EP550_10435 PF00171 Aldehyde dehydrogenase family EP550_10440 PF00107 Zinc-binding dehydrogenase EP550_10440 PF08240 Alcohol dehydrogenase GroES-like domain EP550_10445 PF00474 Sodium:solute symporter family EP550_10450 PF04341 Protein of unknown function, DUF485 EP550_10455 PF00501 AMP-binding enzyme EP550_10455 PF13193 AMP-binding enzyme C-terminal domain EP550_10460 PF02954 Bacterial regulatory protein, Fis family EP550_10460 PF06506 Propionate catabolism activator EP550_10460 PF00158 Sigma-54 interaction domain EP550_10470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_10470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_10470 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_10490 PF00171 Aldehyde dehydrogenase family EP550_10500 PF07690 Major Facilitator Superfamily EP550_10505 PF00920 Dehydratase family EP550_10510 PF07729 FCD domain EP550_10510 PF00392 Bacterial regulatory proteins, gntR family EP550_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_10520 PF03466 LysR substrate binding domain EP550_10525 PF13378 Enolase C-terminal domain-like EP550_10525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP550_10530 PF02426 Muconolactone delta-isomerase EP550_10535 PF04444 Catechol dioxygenase N terminus EP550_10535 PF00775 Dioxygenase EP550_10540 PF01144 Coenzyme A transferase EP550_10545 PF01144 Coenzyme A transferase EP550_10550 PF00108 Thiolase, N-terminal domain EP550_10550 PF02803 Thiolase, C-terminal domain EP550_10555 PF12146 Serine aminopeptidase, S33 EP550_10560 PF01804 Penicillin amidase EP550_10565 PF00171 Aldehyde dehydrogenase family EP550_10575 PF02727 Copper amine oxidase, N2 domain EP550_10575 PF02728 Copper amine oxidase, N3 domain EP550_10575 PF01179 Copper amine oxidase, enzyme domain EP550_10575 PF07833 Copper amine oxidase N-terminal domain EP550_10580 PF02311 AraC-like ligand binding domain EP550_10580 PF12833 Helix-turn-helix domain EP550_10585 PF01613 Flavin reductase like domain EP550_10590 PF00175 Oxidoreductase NAD-binding domain EP550_10590 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_10605 PF00355 Rieske [2Fe-2S] domain EP550_10605 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP550_10620 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP550_10625 PF01425 Amidase EP550_10635 PF07690 Major Facilitator Superfamily EP550_10645 PF00106 short chain dehydrogenase EP550_10660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_10660 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_10660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_10665 PF03466 LysR substrate binding domain EP550_10670 PF09339 IclR helix-turn-helix domain EP550_10670 PF01614 Bacterial transcriptional regulator EP550_10675 PF00753 Metallo-beta-lactamase superfamily EP550_10685 PF04143 Sulphur transport EP550_10695 PF13360 PQQ-like domain EP550_10695 PF01011 PQQ enzyme repeat EP550_10700 PF04966 Carbohydrate-selective porin, OprB family EP550_10705 PF05048 Periplasmic copper-binding protein (NosD) EP550_10710 PF01487 Type I 3-dehydroquinase EP550_10715 PF00775 Dioxygenase EP550_10720 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal EP550_10720 PF00775 Dioxygenase EP550_10725 PF02627 Carboxymuconolactone decarboxylase family EP550_10730 PF07690 Major Facilitator Superfamily EP550_10735 PF00561 alpha/beta hydrolase fold EP550_10740 PF00206 Lyase EP550_10740 PF10397 Adenylosuccinate lyase C-terminus EP550_10745 PF02803 Thiolase, C-terminal domain EP550_10745 PF00108 Thiolase, N-terminal domain EP550_10750 PF01144 Coenzyme A transferase EP550_10755 PF01144 Coenzyme A transferase EP550_10760 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EP550_10765 PF04977 Septum formation initiator EP550_10770 PF04239 Protein of unknown function (DUF421) EP550_10775 PF03952 Enolase, N-terminal domain EP550_10775 PF00113 Enolase, C-terminal TIM barrel domain EP550_10780 PF00793 DAHP synthetase I family EP550_10785 PF00117 Glutamine amidotransferase class-I EP550_10785 PF06418 CTP synthase N-terminus EP550_10815 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_10815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP550_10830 PF00793 DAHP synthetase I family EP550_10835 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EP550_10840 PF10431 C-terminal, D2-small domain, of ClpB protein EP550_10840 PF00004 ATPase family associated with various cellular activities (AAA) EP550_10840 PF17871 AAA lid domain EP550_10840 PF02861 Clp amino terminal domain, pathogenicity island component EP550_10840 PF07724 AAA domain (Cdc48 subfamily) EP550_10845 PF02617 ATP-dependent Clp protease adaptor protein ClpS EP550_10855 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP550_10855 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP550_10870 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EP550_10875 PF00585 C-terminal regulatory domain of Threonine dehydratase EP550_10875 PF00291 Pyridoxal-phosphate dependent enzyme EP550_10880 PF02254 TrkA-N domain EP550_10880 PF02080 TrkA-C domain EP550_10885 PF02386 Cation transport protein EP550_10890 PF02253 Phospholipase A1 EP550_10895 PF05193 Peptidase M16 inactive domain EP550_10895 PF00675 Insulinase (Peptidase family M16) EP550_10895 PF08367 Peptidase M16C associated EP550_10900 PF07715 TonB-dependent Receptor Plug Domain EP550_10900 PF00593 TonB dependent receptor EP550_10905 PF00294 pfkB family carbohydrate kinase EP550_10915 PF07290 Protein of unknown function (DUF1449) EP550_10920 PF13936 Helix-turn-helix domain EP550_10920 PF00665 Integrase core domain EP550_10925 PF13737 Transposase DDE domain EP550_10935 PF01654 Cytochrome bd terminal oxidase subunit I EP550_10940 PF02322 Cytochrome bd terminal oxidase subunit II EP550_10945 PF08173 Membrane bound YbgT-like protein EP550_10960 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EP550_10970 PF02881 SRP54-type protein, helical bundle domain EP550_10970 PF00448 SRP54-type protein, GTPase domain EP550_10995 PF00571 CBS domain EP550_10995 PF00478 IMP dehydrogenase / GMP reductase domain EP550_11000 PF00202 Aminotransferase class-III EP550_11005 PF00462 Glutaredoxin EP550_11015 PF03466 LysR substrate binding domain EP550_11015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_11020 PF00557 Metallopeptidase family M24 EP550_11025 PF05525 Branched-chain amino acid transport protein EP550_11050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EP550_11050 PF00381 PTS HPr component phosphorylation site EP550_11050 PF02896 PEP-utilising enzyme, TIM barrel domain EP550_11050 PF00391 PEP-utilising enzyme, mobile domain EP550_11050 PF05524 PEP-utilising enzyme, N-terminal EP550_11055 PF00294 pfkB family carbohydrate kinase EP550_11060 PF02378 Phosphotransferase system, EIIC EP550_11060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EP550_11080 PF00990 Diguanylate cyclase, GGDEF domain EP550_11080 PF00563 EAL domain EP550_11080 PF03707 Bacterial signalling protein N terminal repeat EP550_11090 PF07995 Glucose / Sorbosone dehydrogenase EP550_11095 PF02586 SOS response associated peptidase (SRAP) EP550_11100 PF01740 STAS domain EP550_11100 PF00916 Sulfate permease family EP550_11105 PF05922 Peptidase inhibitor I9 EP550_11105 PF00082 Subtilase family EP550_11115 PF00324 Amino acid permease EP550_11120 PF00266 Aminotransferase class-V EP550_11125 PF01037 Lrp/AsnC ligand binding domain EP550_11150 PF13419 Haloacid dehalogenase-like hydrolase EP550_11155 PF01479 S4 domain EP550_11160 PF00154 recA bacterial DNA recombination protein EP550_11165 PF02631 RecX family EP550_11180 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EP550_11180 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_11185 PF07977 FabA-like domain EP550_11190 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_11190 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EP550_11200 PF01103 Surface antigen EP550_11200 PF07244 Surface antigen variable number repeat EP550_11205 PF02163 Peptidase family M50 EP550_11205 PF17820 PDZ domain EP550_11205 PF13180 PDZ domain EP550_11210 PF13288 DXP reductoisomerase C-terminal domain EP550_11210 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EP550_11210 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EP550_11220 PF01255 Putative undecaprenyl diphosphate synthase EP550_11225 PF01765 Ribosome recycling factor EP550_11230 PF00696 Amino acid kinase family EP550_11235 PF00919 Uncharacterized protein family UPF0004 EP550_11235 PF18693 TRAM domain EP550_11235 PF04055 Radical SAM superfamily EP550_11245 PF00989 PAS fold EP550_11245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_11245 PF00512 His Kinase A (phospho-acceptor) domain EP550_11250 PF00072 Response regulator receiver domain EP550_11250 PF00158 Sigma-54 interaction domain EP550_11250 PF02954 Bacterial regulatory protein, Fis family EP550_11255 PF00440 Bacterial regulatory proteins, tetR family EP550_11260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP550_11260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP550_11270 PF02542 YgbB family EP550_11280 PF01266 FAD dependent oxidoreductase EP550_11305 PF10415 Fumarase C C-terminus EP550_11305 PF00206 Lyase EP550_11310 PF16363 GDP-mannose 4,6 dehydratase EP550_11315 PF02635 DsrE/DsrF-like family EP550_11335 PF00892 EamA-like transporter family EP550_11340 PF00392 Bacterial regulatory proteins, gntR family EP550_11340 PF00155 Aminotransferase class I and II EP550_11345 PF01638 HxlR-like helix-turn-helix EP550_11350 PF03453 MoeA N-terminal region (domain I and II) EP550_11350 PF00994 Probable molybdopterin binding domain EP550_11350 PF03454 MoeA C-terminal region (domain IV) EP550_11355 PF01967 MoaC family EP550_11355 PF00994 Probable molybdopterin binding domain EP550_11360 PF02391 MoaE protein EP550_11370 PF04055 Radical SAM superfamily EP550_11370 PF06463 Molybdenum Cofactor Synthesis C EP550_11375 PF00384 Molybdopterin oxidoreductase EP550_11375 PF01568 Molydopterin dinucleotide binding domain EP550_11375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP550_11380 PF12804 MobA-like NTP transferase domain EP550_11385 PF04324 BFD-like [2Fe-2S] binding domain EP550_11385 PF00384 Molybdopterin oxidoreductase EP550_11385 PF01568 Molydopterin dinucleotide binding domain EP550_11385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP550_11390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP550_11390 PF04324 BFD-like [2Fe-2S] binding domain EP550_11390 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP550_11390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP550_11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_11395 PF04324 BFD-like [2Fe-2S] binding domain EP550_11395 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP550_11395 PF13806 Rieske-like [2Fe-2S] domain EP550_11395 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP550_11395 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP550_11395 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_11405 PF00072 Response regulator receiver domain EP550_11405 PF00486 Transcriptional regulatory protein, C terminal EP550_11410 PF00005 ABC transporter EP550_11420 PF11799 impB/mucB/samB family C-terminal domain EP550_11420 PF00817 impB/mucB/samB family EP550_11420 PF13438 Domain of unknown function (DUF4113) EP550_11425 PF01220 Dehydroquinase class II EP550_11430 PF00364 Biotin-requiring enzyme EP550_11435 PF00289 Biotin carboxylase, N-terminal domain EP550_11435 PF02785 Biotin carboxylase C-terminal domain EP550_11435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP550_11445 PF12832 MFS_1 like family EP550_11470 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP550_11660 PF00145 C-5 cytosine-specific DNA methylase EP550_11745 PF01645 Conserved region in glutamate synthase EP550_11760 PF01565 FAD binding domain EP550_11760 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EP550_11765 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP550_11775 PF00465 Iron-containing alcohol dehydrogenase EP550_11780 PF03061 Thioesterase superfamily EP550_11785 PF05506 Domain of unknown function (DUF756) EP550_11785 PF04185 Phosphoesterase family EP550_11790 PF12170 DNA polymerase III tau subunit V interacting with alpha EP550_11790 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EP550_11790 PF12169 DNA polymerase III subunits gamma and tau domain III EP550_11795 PF07690 Major Facilitator Superfamily EP550_11820 PF00108 Thiolase, N-terminal domain EP550_11820 PF02803 Thiolase, C-terminal domain EP550_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_11830 PF03466 LysR substrate binding domain EP550_11840 PF01810 LysE type translocator EP550_11845 PF01037 Lrp/AsnC ligand binding domain EP550_11850 PF03594 Benzoate membrane transport protein EP550_11855 PF02308 MgtC family EP550_11860 PF00689 Cation transporting ATPase, C-terminus EP550_11860 PF00690 Cation transporter/ATPase, N-terminus EP550_11875 PF00582 Universal stress protein family EP550_11880 PF12848 ABC transporter EP550_11880 PF00005 ABC transporter EP550_11900 PF00593 TonB dependent receptor EP550_11900 PF07715 TonB-dependent Receptor Plug Domain EP550_11935 PF00924 Mechanosensitive ion channel EP550_11940 PF07715 TonB-dependent Receptor Plug Domain EP550_11940 PF00593 TonB dependent receptor EP550_11945 PF00440 Bacterial regulatory proteins, tetR family EP550_11960 PF01037 Lrp/AsnC ligand binding domain EP550_11965 PF01817 Chorismate mutase type II EP550_11975 PF00106 short chain dehydrogenase EP550_11985 PF11940 Domain of unknown function (DUF3458) Ig-like fold EP550_11985 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EP550_11985 PF01433 Peptidase family M1 domain EP550_12000 PF02110 Hydroxyethylthiazole kinase family EP550_12005 PF06445 GyrI-like small molecule binding domain EP550_12015 PF05970 PIF1-like helicase EP550_12015 PF14493 Helix-turn-helix domain EP550_12020 PF00465 Iron-containing alcohol dehydrogenase EP550_12035 PF00171 Aldehyde dehydrogenase family EP550_12040 PF13520 Amino acid permease EP550_12045 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EP550_12050 PF05985 Ethanolamine ammonia-lyase light chain (EutC) EP550_12055 PF00117 Glutamine amidotransferase class-I EP550_12055 PF00958 GMP synthase C terminal domain EP550_12055 PF02540 NAD synthase EP550_12070 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EP550_12070 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP550_12075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP550_12080 PF00149 Calcineurin-like phosphoesterase EP550_12090 PF00881 Nitroreductase family EP550_12100 PF17209 Hfq protein EP550_12110 PF08676 MutL C terminal dimerisation domain EP550_12110 PF01119 DNA mismatch repair protein, C-terminal domain EP550_12115 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EP550_12120 PF01479 S4 domain EP550_12120 PF00849 RNA pseudouridylate synthase EP550_12135 PF00849 RNA pseudouridylate synthase EP550_12135 PF01479 S4 domain EP550_12145 PF04284 Protein of unknown function (DUF441) EP550_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_12150 PF03466 LysR substrate binding domain EP550_12165 PF07690 Major Facilitator Superfamily EP550_12170 PF00027 Cyclic nucleotide-binding domain EP550_12170 PF00520 Ion transport protein EP550_12180 PF00330 Aconitase family (aconitate hydratase) EP550_12180 PF06434 Aconitate hydratase 2 N-terminus EP550_12180 PF11791 Aconitate B N-terminal domain EP550_12200 PF01103 Surface antigen EP550_12200 PF17243 POTRA domain TamA domain 1 EP550_12200 PF07244 Surface antigen variable number repeat EP550_12205 PF07690 Major Facilitator Superfamily EP550_12210 PF03232 Ubiquinone biosynthesis protein COQ7 EP550_12220 PF00120 Glutamine synthetase, catalytic domain EP550_12225 PF00486 Transcriptional regulatory protein, C terminal EP550_12225 PF00072 Response regulator receiver domain EP550_12230 PF02702 Osmosensitive K+ channel His kinase sensor domain EP550_12230 PF13493 Domain of unknown function (DUF4118) EP550_12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_12230 PF00512 His Kinase A (phospho-acceptor) domain EP550_12235 PF02669 K+-transporting ATPase, c chain EP550_12245 PF03814 Potassium-transporting ATPase A subunit EP550_12260 PF03109 ABC1 family EP550_12265 PF00899 ThiF family EP550_12270 PF01613 Flavin reductase like domain EP550_12275 PF00501 AMP-binding enzyme EP550_12275 PF13193 AMP-binding enzyme C-terminal domain EP550_12280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_12280 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_12280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_12285 PF00106 short chain dehydrogenase EP550_12290 PF12833 Helix-turn-helix domain EP550_12295 PF09084 NMT1/THI5 like EP550_12300 PF00528 Binding-protein-dependent transport system inner membrane component EP550_12305 PF17827 PrmC N-terminal domain EP550_12305 PF13847 Methyltransferase domain EP550_12310 PF00472 RF-1 domain EP550_12310 PF03462 PCRF domain EP550_12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_12320 PF03466 LysR substrate binding domain EP550_12340 PF00296 Luciferase-like monooxygenase EP550_12350 PF13994 PgaD-like protein EP550_12355 PF00535 Glycosyl transferase family 2 EP550_12360 PF14883 Hypothetical glycosyl hydrolase family 13 EP550_12360 PF01522 Polysaccharide deacetylase EP550_12370 PF03618 Kinase/pyrophosphorylase EP550_12375 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EP550_12375 PF02896 PEP-utilising enzyme, TIM barrel domain EP550_12375 PF00391 PEP-utilising enzyme, mobile domain EP550_12385 PF06481 COX Aromatic Rich Motif EP550_12385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EP550_12390 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP550_12395 PF00510 Cytochrome c oxidase subunit III EP550_12400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EP550_12405 PF01040 UbiA prenyltransferase family EP550_12410 PF01250 Ribosomal protein S6 EP550_12415 PF01084 Ribosomal protein S18 EP550_12420 PF03948 Ribosomal protein L9, C-terminal domain EP550_12420 PF01281 Ribosomal protein L9, N-terminal domain EP550_12425 PF00772 DnaB-like helicase N terminal domain EP550_12425 PF03796 DnaB-like helicase C terminal domain EP550_12430 PF00842 Alanine racemase, C-terminal domain EP550_12430 PF01168 Alanine racemase, N-terminal domain EP550_12440 PF01841 Transglutaminase-like superfamily EP550_12440 PF08379 Bacterial transglutaminase-like N-terminal region EP550_12450 PF14403 Circularly permuted ATP-grasp type 2 EP550_12460 PF13932 GidA associated domain EP550_12460 PF01134 Glucose inhibited division protein A EP550_12480 PF02954 Bacterial regulatory protein, Fis family EP550_12485 PF01808 AICARFT/IMPCHase bienzyme EP550_12485 PF02142 MGS-like domain EP550_12490 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EP550_12490 PF02843 Phosphoribosylglycinamide synthetase, C domain EP550_12490 PF02844 Phosphoribosylglycinamide synthetase, N domain EP550_12495 PF03180 NLPA lipoprotein EP550_12500 PF09383 NIL domain EP550_12500 PF00005 ABC transporter EP550_12505 PF00528 Binding-protein-dependent transport system inner membrane component EP550_12510 PF00753 Metallo-beta-lactamase superfamily EP550_12510 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP550_12520 PF00375 Sodium:dicarboxylate symporter family EP550_12540 PF07995 Glucose / Sorbosone dehydrogenase EP550_12545 PF00892 EamA-like transporter family EP550_12550 PF01177 Asp/Glu/Hydantoin racemase EP550_12560 PF02470 MlaD protein EP550_12565 PF04403 Paraquat-inducible protein A EP550_12575 PF06826 Predicted Permease Membrane Region EP550_12575 PF02080 TrkA-C domain EP550_12580 PF00155 Aminotransferase class I and II EP550_12605 PF00083 Sugar (and other) transporter EP550_12605 PF08946 Osmosensory transporter coiled coil EP550_12645 PF13737 Transposase DDE domain EP550_12660 PF07729 FCD domain EP550_12660 PF00392 Bacterial regulatory proteins, gntR family EP550_12670 PF03616 Sodium/glutamate symporter EP550_12675 PF00561 alpha/beta hydrolase fold EP550_12700 PF04076 Bacterial OB fold (BOF) protein EP550_12730 PF00324 Amino acid permease EP550_12735 PF00171 Aldehyde dehydrogenase family EP550_12740 PF00202 Aminotransferase class-III EP550_12745 PF03466 LysR substrate binding domain EP550_12745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_12770 PF00069 Protein kinase domain EP550_12790 PF00814 Glycoprotease family EP550_12795 PF01165 Ribosomal protein S21 EP550_12800 PF09424 Yqey-like protein EP550_12805 PF01435 Peptidase family M48 EP550_12810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP550_12810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP550_12825 PF00156 Phosphoribosyl transferase domain EP550_12830 PF02674 Colicin V production protein EP550_12835 PF01180 Dihydroorotate dehydrogenase EP550_12855 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EP550_12855 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EP550_12860 PF00881 Nitroreductase family EP550_12870 PF00271 Helicase conserved C-terminal domain EP550_12870 PF00270 DEAD/DEAH box helicase EP550_12875 PF00313 'Cold-shock' DNA-binding domain EP550_12885 PF04545 Sigma-70, region 4 EP550_12885 PF04542 Sigma-70 region 2 EP550_12885 PF00140 Sigma-70 factor, region 1.2 EP550_12890 PF04241 Protein of unknown function (DUF423) EP550_12900 PF05690 Thiazole biosynthesis protein ThiG EP550_12910 PF03883 Peroxide stress protein YaaA EP550_12920 PF12706 Beta-lactamase superfamily domain EP550_12925 PF01546 Peptidase family M20/M25/M40 EP550_12925 PF07687 Peptidase dimerisation domain EP550_12935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP550_12940 PF00800 Prephenate dehydratase EP550_12940 PF01842 ACT domain EP550_12940 PF01817 Chorismate mutase type II EP550_12945 PF00756 Putative esterase EP550_12950 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_12950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_12950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_12955 PF00375 Sodium:dicarboxylate symporter family EP550_12965 PF02885 Glycosyl transferase family, helical bundle domain EP550_12965 PF00591 Glycosyl transferase family, a/b domain EP550_12970 PF07023 Protein of unknown function (DUF1315) EP550_12975 PF01513 ATP-NAD kinase EP550_12980 PF00905 Penicillin binding protein transpeptidase domain EP550_12980 PF14814 Bifunctional transglycosylase second domain EP550_12980 PF00912 Transglycosylase EP550_12990 PF00293 NUDIX domain EP550_13000 PF00512 His Kinase A (phospho-acceptor) domain EP550_13000 PF08521 Two-component sensor kinase N-terminal EP550_13000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_13005 PF00486 Transcriptional regulatory protein, C terminal EP550_13005 PF00072 Response regulator receiver domain EP550_13015 PF00437 Type II/IV secretion system protein EP550_13025 PF01980 tRNA-methyltransferase O EP550_13025 PF18389 TrmO C-terminal domain EP550_13030 PF00175 Oxidoreductase NAD-binding domain EP550_13030 PF00970 Oxidoreductase FAD-binding domain EP550_13035 PF02567 Phenazine biosynthesis-like protein EP550_13040 PF00392 Bacterial regulatory proteins, gntR family EP550_13040 PF00155 Aminotransferase class I and II EP550_13050 PF00037 4Fe-4S binding domain EP550_13055 PF00893 Small Multidrug Resistance protein EP550_13060 PF00005 ABC transporter EP550_13065 PF00528 Binding-protein-dependent transport system inner membrane component EP550_13070 PF00528 Binding-protein-dependent transport system inner membrane component EP550_13075 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP550_13080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_13080 PF03466 LysR substrate binding domain EP550_13085 PF13533 Biotin-lipoyl like EP550_13090 PF00873 AcrB/AcrD/AcrF family EP550_13095 PF02321 Outer membrane efflux protein EP550_13100 PF00464 Serine hydroxymethyltransferase EP550_13130 PF00005 ABC transporter EP550_13135 PF01061 ABC-2 type transporter EP550_13140 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EP550_13140 PF14489 QueF-like protein EP550_13150 PF01098 Cell cycle protein EP550_13155 PF13406 Transglycosylase SLT domain EP550_13160 PF05036 Sporulation related domain EP550_13160 PF03330 Lytic transglycolase EP550_13180 PF12833 Helix-turn-helix domain EP550_13190 PF00889 Elongation factor TS EP550_13195 PF00318 Ribosomal protein S2 EP550_13200 PF00557 Metallopeptidase family M24 EP550_13210 PF07690 Major Facilitator Superfamily EP550_13220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP550_13220 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_13225 PF04055 Radical SAM superfamily EP550_13230 PF09317 Domain of unknown function (DUF1974) EP550_13230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_13230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_13245 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP550_13245 PF05221 S-adenosyl-L-homocysteine hydrolase EP550_13250 PF02219 Methylenetetrahydrofolate reductase EP550_13255 PF04452 RNA methyltransferase EP550_13260 PF03707 Bacterial signalling protein N terminal repeat EP550_13260 PF00990 Diguanylate cyclase, GGDEF domain EP550_13260 PF00563 EAL domain EP550_13265 PF01515 Phosphate acetyl/butaryl transferase EP550_13265 PF03949 Malic enzyme, NAD binding domain EP550_13265 PF00390 Malic enzyme, N-terminal domain EP550_13270 PF12627 Probable RNA and SrmB- binding site of polymerase A EP550_13270 PF01743 Poly A polymerase head domain EP550_13275 PF13180 PDZ domain EP550_13280 PF01784 NIF3 (NGG1p interacting factor 3) EP550_13285 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EP550_13285 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EP550_13320 PF01040 UbiA prenyltransferase family EP550_13325 PF04345 Chorismate lyase EP550_13335 PF00854 POT family EP550_13345 PF00589 Phage integrase family EP550_13345 PF13356 Arm DNA-binding domain EP550_13565 PF13737 Transposase DDE domain EP550_13730 PF01812 5-formyltetrahydrofolate cyclo-ligase family EP550_13740 PF13018 Extended Signal Peptide of Type V secretion system EP550_13740 PF05662 Coiled stalk of trimeric autotransporter adhesin EP550_13740 PF05658 Head domain of trimeric autotransporter adhesin EP550_13740 PF03895 YadA-like membrane anchor domain EP550_13745 PF05362 Lon protease (S16) C-terminal proteolytic domain EP550_13745 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP550_13745 PF00004 ATPase family associated with various cellular activities (AAA) EP550_13750 PF02590 Predicted SPOUT methyltransferase EP550_13755 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP550_13765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP550_13765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP550_13770 PF04060 Putative Fe-S cluster EP550_13775 PF00633 Helix-hairpin-helix motif EP550_13775 PF10576 Iron-sulfur binding domain of endonuclease III EP550_13775 PF00730 HhH-GPD superfamily base excision DNA repair protein EP550_13785 PF05191 Adenylate kinase, active site lid EP550_13800 PF03717 Penicillin-binding Protein dimerisation domain EP550_13800 PF00905 Penicillin binding protein transpeptidase domain EP550_13815 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP550_13820 PF01730 UreF EP550_13825 PF05194 UreE urease accessory protein, C-terminal domain EP550_13825 PF02814 UreE urease accessory protein, N-terminal domain EP550_13830 PF01979 Amidohydrolase family EP550_13830 PF00449 Urease alpha-subunit, N-terminal domain EP550_13835 PF00699 Urease beta subunit EP550_13840 PF00547 Urease, gamma subunit EP550_13845 PF01774 UreD urease accessory protein EP550_13860 PF00463 Isocitrate lyase family EP550_13865 PF03466 LysR substrate binding domain EP550_13865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_13870 PF00571 CBS domain EP550_13870 PF01595 Cyclin M transmembrane N-terminal domain EP550_13870 PF03471 Transporter associated domain EP550_13880 PF03600 Citrate transporter EP550_13895 PF00009 Elongation factor Tu GTP binding domain EP550_13900 PF01507 Phosphoadenosine phosphosulfate reductase family EP550_13910 PF14052 Capsule assembly protein Wzi EP550_13915 PF01336 OB-fold nucleic acid binding domain EP550_13915 PF00152 tRNA synthetases class II (D, K and N) EP550_13930 PF00301 Rubredoxin EP550_13935 PF18113 Rubredoxin binding C-terminal domain EP550_13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_13940 PF00561 alpha/beta hydrolase fold EP550_13945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_13945 PF03466 LysR substrate binding domain EP550_13960 PF17941 Polyphosphate kinase C-terminal domain 1 EP550_13960 PF13089 Polyphosphate kinase N-terminal domain EP550_13960 PF13090 Polyphosphate kinase C-terminal domain 2 EP550_13960 PF02503 Polyphosphate kinase middle domain EP550_13965 PF00912 Transglycosylase EP550_13970 PF01694 Rhomboid family EP550_13980 PF00005 ABC transporter EP550_13985 PF13472 GDSL-like Lipase/Acylhydrolase family EP550_13990 PF00484 Carbonic anhydrase EP550_13995 PF00561 alpha/beta hydrolase fold EP550_14005 PF07715 TonB-dependent Receptor Plug Domain EP550_14005 PF00593 TonB dependent receptor EP550_14010 PF01106 NifU-like domain EP550_14010 PF01521 Iron-sulphur cluster biosynthesis EP550_14020 PF00884 Sulfatase EP550_14025 PF03781 Sulfatase-modifying factor enzyme 1 EP550_14040 PF00291 Pyridoxal-phosphate dependent enzyme EP550_14045 PF01384 Phosphate transporter family EP550_14050 PF02607 B12 binding domain EP550_14050 PF02310 B12 binding domain EP550_14050 PF02965 Vitamin B12 dependent methionine synthase, activation domain EP550_14050 PF00809 Pterin binding enzyme EP550_14050 PF02574 Homocysteine S-methyltransferase EP550_14055 PF02779 Transketolase, pyrimidine binding domain EP550_14055 PF02780 Transketolase, C-terminal domain EP550_14060 PF00456 Transketolase, thiamine diphosphate binding domain EP550_14065 PF07690 Major Facilitator Superfamily EP550_14075 PF03466 LysR substrate binding domain EP550_14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_14090 PF01263 Aldose 1-epimerase EP550_14095 PF07690 Major Facilitator Superfamily EP550_14100 PF12833 Helix-turn-helix domain EP550_14100 PF02311 AraC-like ligand binding domain EP550_14105 PF04960 Glutaminase EP550_14110 PF01327 Polypeptide deformylase EP550_14115 PF07690 Major Facilitator Superfamily EP550_14125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP550_14125 PF00205 Thiamine pyrophosphate enzyme, central domain EP550_14125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP550_14130 PF00171 Aldehyde dehydrogenase family EP550_14135 PF03447 Homoserine dehydrogenase, NAD binding domain EP550_14135 PF01958 Domain of unknown function DUF108 EP550_14145 PF12697 Alpha/beta hydrolase family EP550_14155 PF07690 Major Facilitator Superfamily EP550_14160 PF14759 Reductase C-terminal EP550_14160 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_14165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP550_14175 PF00355 Rieske [2Fe-2S] domain EP550_14185 PF00355 Rieske [2Fe-2S] domain EP550_14190 PF01614 Bacterial transcriptional regulator EP550_14190 PF09339 IclR helix-turn-helix domain EP550_14205 PF00378 Enoyl-CoA hydratase/isomerase EP550_14215 PF00535 Glycosyl transferase family 2 EP550_14220 PF14883 Hypothetical glycosyl hydrolase family 13 EP550_14220 PF01522 Polysaccharide deacetylase EP550_14225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP550_14230 PF07152 YaeQ protein EP550_14235 PF00375 Sodium:dicarboxylate symporter family EP550_14240 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP550_14240 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP550_14250 PF03061 Thioesterase superfamily EP550_14260 PF02028 BCCT, betaine/carnitine/choline family transporter EP550_14265 PF02028 BCCT, betaine/carnitine/choline family transporter EP550_14270 PF13977 BetI-type transcriptional repressor, C-terminal EP550_14270 PF00440 Bacterial regulatory proteins, tetR family EP550_14275 PF00171 Aldehyde dehydrogenase family EP550_14280 PF05199 GMC oxidoreductase EP550_14280 PF00732 GMC oxidoreductase EP550_14285 PF06039 Malate:quinone oxidoreductase (Mqo) EP550_14295 PF02574 Homocysteine S-methyltransferase EP550_14300 PF13520 Amino acid permease EP550_14350 PF07715 TonB-dependent Receptor Plug Domain EP550_14350 PF00593 TonB dependent receptor EP550_14360 PF08281 Sigma-70, region 4 EP550_14360 PF04542 Sigma-70 region 2 EP550_14370 PF00701 Dihydrodipicolinate synthetase family EP550_14375 PF00083 Sugar (and other) transporter EP550_14430 PF07690 Major Facilitator Superfamily EP550_14435 PF13533 Biotin-lipoyl like EP550_14440 PF03061 Thioesterase superfamily EP550_14445 PF00490 Delta-aminolevulinic acid dehydratase EP550_14450 PF01266 FAD dependent oxidoreductase EP550_14455 PF01370 NAD dependent epimerase/dehydratase family EP550_14455 PF08338 Domain of unknown function (DUF1731) EP550_14475 PF00149 Calcineurin-like phosphoesterase EP550_14475 PF12320 Type 5 capsule protein repressor C-terminal domain EP550_14485 PF01168 Alanine racemase, N-terminal domain EP550_14490 PF00437 Type II/IV secretion system protein EP550_14495 PF00437 Type II/IV secretion system protein EP550_14500 PF01475 Ferric uptake regulator family EP550_14505 PF04355 SmpA / OmlA family EP550_14510 PF03658 RnfH family Ubiquitin EP550_14525 PF01814 Hemerythrin HHE cation binding domain EP550_14530 PF13230 Glutamine amidotransferases class-II EP550_14540 PF00696 Amino acid kinase family EP550_14545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP550_14545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP550_14545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP550_14545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP550_14550 PF00692 dUTPase EP550_14555 PF00580 UvrD/REP helicase N-terminal domain EP550_14555 PF13361 UvrD-like helicase C-terminal domain EP550_14560 PF00691 OmpA family EP550_14560 PF13488 Glycine zipper EP550_14565 PF01553 Acyltransferase EP550_14575 PF03775 Septum formation inhibitor MinC, C-terminal domain EP550_14580 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EP550_14585 PF03776 Septum formation topological specificity factor MinE EP550_14600 PF01810 LysE type translocator EP550_14615 PF03050 Transposase IS66 family EP550_14615 PF13007 Transposase C of IS166 homeodomain EP550_14615 PF13005 zinc-finger binding domain of transposase IS66 EP550_14615 PF13817 IS66 C-terminal element EP550_14620 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EP550_14620 PF17854 FtsK alpha domain EP550_14620 PF09397 Ftsk gamma domain EP550_14620 PF01580 FtsK/SpoIIIE family EP550_14625 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP550_14630 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EP550_14635 PF04377 Arginine-tRNA-protein transferase, C terminus EP550_14635 PF04376 Arginine-tRNA-protein transferase, N terminus EP550_14640 PF00583 Acetyltransferase (GNAT) family EP550_14655 PF03143 Elongation factor Tu C-terminal domain EP550_14655 PF00009 Elongation factor Tu GTP binding domain EP550_14655 PF03144 Elongation factor Tu domain 2 EP550_14660 PF03764 Elongation factor G, domain IV EP550_14660 PF14492 Elongation Factor G, domain II EP550_14660 PF00009 Elongation factor Tu GTP binding domain EP550_14660 PF03144 Elongation factor Tu domain 2 EP550_14660 PF00679 Elongation factor G C-terminus EP550_14665 PF00177 Ribosomal protein S7p/S5e EP550_14670 PF00164 Ribosomal protein S12/S23 EP550_14680 PF02801 Beta-ketoacyl synthase, C-terminal domain EP550_14680 PF00109 Beta-ketoacyl synthase, N-terminal domain EP550_14690 PF02678 Pirin EP550_14690 PF05726 Pirin C-terminal cupin domain EP550_14700 PF00795 Carbon-nitrogen hydrolase EP550_14700 PF02540 NAD synthase EP550_14715 PF00175 Oxidoreductase NAD-binding domain EP550_14715 PF00111 2Fe-2S iron-sulfur cluster binding domain EP550_14715 PF00970 Oxidoreductase FAD-binding domain EP550_14720 PF00171 Aldehyde dehydrogenase family EP550_14725 PF00355 Rieske [2Fe-2S] domain EP550_14725 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP550_14730 PF07859 alpha/beta hydrolase fold EP550_14735 PF02028 BCCT, betaine/carnitine/choline family transporter EP550_14740 PF00180 Isocitrate/isopropylmalate dehydrogenase EP550_14745 PF03466 LysR substrate binding domain EP550_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_14765 PF00037 4Fe-4S binding domain EP550_14770 PF01467 Cytidylyltransferase-like EP550_14775 PF01668 SmpB protein EP550_14780 PF03358 NADPH-dependent FMN reductase EP550_14790 PF00849 RNA pseudouridylate synthase EP550_14790 PF01479 S4 domain EP550_14795 PF13525 Outer membrane lipoprotein EP550_14800 PF10410 DnaB-helicase binding domain of primase EP550_14800 PF08278 DNA primase DnaG DnaB-binding EP550_14800 PF08275 DNA primase catalytic core, N-terminal domain EP550_14800 PF01807 CHC2 zinc finger EP550_14805 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EP550_14805 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EP550_14805 PF01488 Shikimate / quinate 5-dehydrogenase EP550_14815 PF03550 Outer membrane lipoprotein LolB EP550_14820 PF00288 GHMP kinases N terminal domain EP550_14820 PF08544 GHMP kinases C terminal EP550_14835 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP550_14835 PF14572 Phosphoribosyl synthetase-associated domain EP550_14840 PF01386 Ribosomal L25p family EP550_14845 PF01195 Peptidyl-tRNA hydrolase EP550_14850 PF02261 Aspartate decarboxylase EP550_14865 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP550_14875 PF03070 TENA/THI-4/PQQC family EP550_14875 PF02581 Thiamine monophosphate synthase EP550_14875 PF08543 Phosphomethylpyrimidine kinase EP550_14880 PF04972 BON domain EP550_14880 PF01476 LysM domain EP550_14885 PF00550 Phosphopantetheine attachment site EP550_14895 PF00698 Acyl transferase domain EP550_14900 PF01783 Ribosomal L32p protein family EP550_14905 PF02620 Large ribosomal RNA subunit accumulation protein YceD EP550_14910 PF04315 Elongation factor P hydroxylase EP550_14915 PF01300 Telomere recombination EP550_14920 PF02616 Segregation and condensation protein ScpA EP550_14925 PF04079 Segregation and condensation complex subunit ScpB EP550_14930 PF00849 RNA pseudouridylate synthase EP550_14930 PF01479 S4 domain EP550_14945 PF00155 Aminotransferase class I and II EP550_14950 PF00202 Aminotransferase class-III EP550_14950 PF06968 Biotin and Thiamin Synthesis associated domain EP550_14950 PF04055 Radical SAM superfamily EP550_14955 PF08241 Methyltransferase domain EP550_14955 PF12697 Alpha/beta hydrolase family EP550_14960 PF02358 Trehalose-phosphatase EP550_14965 PF00982 Glycosyltransferase family 20 EP550_14970 PF07690 Major Facilitator Superfamily EP550_14975 PF00210 Ferritin-like domain EP550_14980 PF12826 Helix-hairpin-helix motif EP550_14980 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EP550_14980 PF03120 NAD-dependent DNA ligase OB-fold domain EP550_14980 PF01653 NAD-dependent DNA ligase adenylation domain EP550_14980 PF00533 BRCA1 C Terminus (BRCT) domain EP550_14990 PF06470 SMC proteins Flexible Hinge Domain EP550_14990 PF02463 RecF/RecN/SMC N terminal domain EP550_15000 PF01925 Sulfite exporter TauE/SafE EP550_15010 PF03309 Type III pantothenate kinase EP550_15015 PF02978 Signal peptide binding domain EP550_15015 PF02881 SRP54-type protein, helical bundle domain EP550_15015 PF00448 SRP54-type protein, GTPase domain EP550_15025 PF01207 Dihydrouridine synthase (Dus) EP550_15060 PF00692 dUTPase EP550_15075 PF01048 Phosphorylase superfamily EP550_15085 PF10609 NUBPL iron-transfer P-loop NTPase EP550_15095 PF01588 Putative tRNA binding domain EP550_15095 PF09334 tRNA synthetases class I (M) EP550_15120 PF13533 Biotin-lipoyl like EP550_15125 PF00291 Pyridoxal-phosphate dependent enzyme EP550_15140 PF05552 Conserved TM helix EP550_15155 PF00970 Oxidoreductase FAD-binding domain EP550_15155 PF00175 Oxidoreductase NAD-binding domain EP550_15160 PF03466 LysR substrate binding domain EP550_15160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_15165 PF00313 'Cold-shock' DNA-binding domain EP550_15175 PF00361 Proton-conducting membrane transporter EP550_15180 PF00361 Proton-conducting membrane transporter EP550_15185 PF00361 Proton-conducting membrane transporter EP550_15185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP550_15190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP550_15195 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EP550_15200 PF12838 4Fe-4S dicluster domain EP550_15205 PF00146 NADH dehydrogenase EP550_15210 PF00384 Molybdopterin oxidoreductase EP550_15210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP550_15210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EP550_15215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EP550_15215 PF10531 SLBB domain EP550_15215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EP550_15225 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EP550_15225 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EP550_15230 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EP550_15235 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EP550_15240 PF00990 Diguanylate cyclase, GGDEF domain EP550_15240 PF17151 Periplasmic sensor domain EP550_15250 PF00672 HAMP domain EP550_15250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_15250 PF00512 His Kinase A (phospho-acceptor) domain EP550_15255 PF00072 Response regulator receiver domain EP550_15255 PF00486 Transcriptional regulatory protein, C terminal EP550_15265 PF02867 Ribonucleotide reductase, barrel domain EP550_15265 PF00317 Ribonucleotide reductase, all-alpha domain EP550_15265 PF03477 ATP cone domain EP550_15275 PF00268 Ribonucleotide reductase, small chain EP550_15285 PF00672 HAMP domain EP550_15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_15285 PF00512 His Kinase A (phospho-acceptor) domain EP550_15285 PF13755 Sensor N-terminal transmembrane domain EP550_15285 PF13756 Stimulus-sensing domain EP550_15355 PF13360 PQQ-like domain EP550_15355 PF01011 PQQ enzyme repeat EP550_15375 PF13737 Transposase DDE domain EP550_15385 PF02567 Phenazine biosynthesis-like protein EP550_15400 PF13936 Helix-turn-helix domain EP550_15400 PF00665 Integrase core domain EP550_15420 PF01613 Flavin reductase like domain EP550_15425 PF08267 Cobalamin-independent synthase, N-terminal domain EP550_15425 PF01717 Cobalamin-independent synthase, Catalytic domain EP550_15435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_15435 PF03466 LysR substrate binding domain EP550_15440 PF01810 LysE type translocator EP550_15450 PF12833 Helix-turn-helix domain EP550_15450 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP550_15455 PF07687 Peptidase dimerisation domain EP550_15455 PF01546 Peptidase family M20/M25/M40 EP550_15465 PF03466 LysR substrate binding domain EP550_15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_15475 PF07690 Major Facilitator Superfamily EP550_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_15485 PF03466 LysR substrate binding domain EP550_15490 PF00890 FAD binding domain EP550_15490 PF14537 Cytochrome c3 EP550_15500 PF02515 CoA-transferase family III EP550_15505 PF07690 Major Facilitator Superfamily EP550_15510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_15510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_15510 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_15515 PF03466 LysR substrate binding domain EP550_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_15520 PF00107 Zinc-binding dehydrogenase EP550_15520 PF08240 Alcohol dehydrogenase GroES-like domain EP550_15525 PF00962 Adenosine/AMP deaminase EP550_15550 PF02445 Quinolinate synthetase A protein EP550_15555 PF01960 ArgJ family EP550_15560 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP550_15560 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP550_15565 PF00893 Small Multidrug Resistance protein EP550_15575 PF05275 Copper resistance protein B precursor (CopB) EP550_15580 PF07732 Multicopper oxidase EP550_15580 PF00394 Multicopper oxidase EP550_15580 PF07731 Multicopper oxidase EP550_15595 PF00834 Ribulose-phosphate 3 epimerase family EP550_15605 PF00756 Putative esterase EP550_15615 PF04445 Putative SAM-dependent methyltransferase EP550_15620 PF00814 Glycoprotease family EP550_15625 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_15630 PF00293 NUDIX domain EP550_15665 PF13817 IS66 C-terminal element EP550_15665 PF03050 Transposase IS66 family EP550_15665 PF13007 Transposase C of IS166 homeodomain EP550_15665 PF13005 zinc-finger binding domain of transposase IS66 EP550_15685 PF04715 Anthranilate synthase component I, N terminal region EP550_15685 PF00425 chorismate binding enzyme EP550_15690 PF00155 Aminotransferase class I and II EP550_15695 PF00815 Histidinol dehydrogenase EP550_15700 PF01634 ATP phosphoribosyltransferase EP550_15705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP550_15710 PF01722 BolA-like protein EP550_15715 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EP550_15720 PF04552 Sigma-54, DNA binding domain EP550_15720 PF00309 Sigma-54 factor, Activator interacting domain (AID) EP550_15720 PF04963 Sigma-54 factor, core binding domain EP550_15765 PF00795 Carbon-nitrogen hydrolase EP550_15775 PF01047 MarR family EP550_15780 PF02566 OsmC-like protein EP550_15785 PF00437 Type II/IV secretion system protein EP550_15805 PF00476 DNA polymerase family A EP550_15805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EP550_15805 PF01612 3'-5' exonuclease EP550_15805 PF01367 5'-3' exonuclease, C-terminal SAM fold EP550_15810 PF02325 YGGT family EP550_15815 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP550_15815 PF03807 NADP oxidoreductase coenzyme F420-dependent EP550_15820 PF11734 TilS substrate C-terminal domain EP550_15820 PF09179 TilS substrate binding domain EP550_15820 PF01171 PP-loop family EP550_15825 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EP550_15830 PF02541 Ppx/GppA phosphatase family EP550_15835 PF00085 Thioredoxin EP550_15840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP550_15840 PF07497 Rho termination factor, RNA-binding domain EP550_15840 PF07498 Rho termination factor, N-terminal domain EP550_15855 PF00216 Bacterial DNA-binding protein EP550_15860 PF03483 B3/4 domain EP550_15860 PF03484 tRNA synthetase B5 domain EP550_15860 PF01588 Putative tRNA binding domain EP550_15860 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EP550_15860 PF03147 Ferredoxin-fold anticodon binding domain EP550_15865 PF01409 tRNA synthetases class II core domain (F) EP550_15865 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EP550_15885 PF00453 Ribosomal protein L20 EP550_15890 PF01632 Ribosomal protein L35 EP550_15895 PF07690 Major Facilitator Superfamily EP550_15900 PF09335 SNARE associated Golgi protein EP550_15905 PF00043 Glutathione S-transferase, C-terminal domain EP550_15905 PF02798 Glutathione S-transferase, N-terminal domain EP550_15915 PF05198 Translation initiation factor IF-3, N-terminal domain EP550_15915 PF00707 Translation initiation factor IF-3, C-terminal domain EP550_15920 PF02824 TGS domain EP550_15920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP550_15920 PF03129 Anticodon binding domain EP550_15920 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP550_15925 PF00501 AMP-binding enzyme EP550_15925 PF13193 AMP-binding enzyme C-terminal domain EP550_15930 PF04751 Protein of unknown function (DUF615) EP550_15935 PF00381 PTS HPr component phosphorylation site EP550_15940 PF03668 P-loop ATPase protein family EP550_15945 PF02569 Pantoate-beta-alanine ligase EP550_15950 PF02548 Ketopantoate hydroxymethyltransferase EP550_15955 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EP550_15960 PF01743 Poly A polymerase head domain EP550_15960 PF12626 Polymerase A arginine-rich C-terminus EP550_15960 PF12627 Probable RNA and SrmB- binding site of polymerase A EP550_15970 PF03819 MazG nucleotide pyrophosphohydrolase domain EP550_15980 PF04607 Region found in RelA / SpoT proteins EP550_15980 PF02824 TGS domain EP550_15980 PF13291 ACT domain EP550_15985 PF05958 tRNA (Uracil-5-)-methyltransferase EP550_15995 PF00291 Pyridoxal-phosphate dependent enzyme EP550_16000 PF01627 Hpt domain EP550_16000 PF00512 His Kinase A (phospho-acceptor) domain EP550_16000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP550_16000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_16000 PF00672 HAMP domain EP550_16000 PF00072 Response regulator receiver domain EP550_16005 PF00378 Enoyl-CoA hydratase/isomerase EP550_16010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP550_16010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP550_16015 PF01261 Xylose isomerase-like TIM barrel EP550_16025 PF00106 short chain dehydrogenase EP550_16030 PF02233 NAD(P) transhydrogenase beta subunit EP550_16035 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EP550_16040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP550_16040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP550_16065 PF07690 Major Facilitator Superfamily EP550_16070 PF01207 Dihydrouridine synthase (Dus) EP550_16080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_16080 PF03466 LysR substrate binding domain EP550_16090 PF00899 ThiF family EP550_16100 PF00694 Aconitase C-terminal domain EP550_16100 PF00330 Aconitase family (aconitate hydratase) EP550_16105 PF01026 TatD related DNase EP550_16120 PF00009 Elongation factor Tu GTP binding domain EP550_16120 PF03144 Elongation factor Tu domain 2 EP550_16120 PF16658 Class II release factor RF3, C-terminal domain EP550_16145 PF00563 EAL domain EP550_16145 PF00990 Diguanylate cyclase, GGDEF domain EP550_16145 PF03707 Bacterial signalling protein N terminal repeat EP550_16150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EP550_16150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EP550_16155 PF10369 Small subunit of acetolactate synthase EP550_16160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP550_16160 PF00205 Thiamine pyrophosphate enzyme, central domain EP550_16160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP550_16170 PF08264 Anticodon-binding domain of tRNA EP550_16170 PF00133 tRNA synthetases class I (I, L, M and V) EP550_16170 PF13603 Leucyl-tRNA synthetase, Domain 2 EP550_16170 PF09334 tRNA synthetases class I (M) EP550_16185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP550_16190 PF00005 ABC transporter EP550_16190 PF02687 FtsX-like permease family EP550_16190 PF12704 MacB-like periplasmic core domain EP550_16195 PF02321 Outer membrane efflux protein EP550_16210 PF00929 Exonuclease EP550_16215 PF03193 RsgA GTPase EP550_16225 PF00462 Glutaredoxin EP550_16230 PF02556 Preprotein translocase subunit SecB EP550_16245 PF00109 Beta-ketoacyl synthase, N-terminal domain EP550_16245 PF02801 Beta-ketoacyl synthase, C-terminal domain EP550_16260 PF02801 Beta-ketoacyl synthase, C-terminal domain EP550_16260 PF00109 Beta-ketoacyl synthase, N-terminal domain EP550_16270 PF04820 Tryptophan halogenase EP550_16290 PF00221 Aromatic amino acid lyase EP550_16305 PF13193 AMP-binding enzyme C-terminal domain EP550_16305 PF00501 AMP-binding enzyme EP550_16315 PF00550 Phosphopantetheine attachment site EP550_16320 PF00550 Phosphopantetheine attachment site EP550_16335 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EP550_16335 PF01926 50S ribosome-binding GTPase EP550_16340 PF13360 PQQ-like domain EP550_16350 PF03129 Anticodon binding domain EP550_16350 PF13393 Histidyl-tRNA synthetase EP550_16355 PF04551 GcpE protein EP550_16360 PF13464 Domain of unknown function (DUF4115) EP550_16370 PF04055 Radical SAM superfamily EP550_16375 PF00334 Nucleoside diphosphate kinase EP550_16380 PF04384 Iron-sulphur cluster assembly EP550_16385 PF01569 PAP2 superfamily EP550_16390 PF00534 Glycosyl transferases group 1 EP550_16390 PF13439 Glycosyltransferase Family 4 EP550_16395 PF00595 PDZ domain EP550_16395 PF17804 Tail specific protease N-terminal domain EP550_16395 PF11818 C-terminal domain of tail specific protease (DUF3340) EP550_16395 PF03572 Peptidase family S41 EP550_16400 PF00933 Glycosyl hydrolase family 3 N terminal domain EP550_16410 PF00561 alpha/beta hydrolase fold EP550_16415 PF00171 Aldehyde dehydrogenase family EP550_16420 PF00171 Aldehyde dehydrogenase family EP550_16425 PF01202 Shikimate kinase EP550_16430 PF02447 GntP family permease EP550_16435 PF01081 KDPG and KHG aldolase EP550_16440 PF00920 Dehydratase family EP550_16450 PF00905 Penicillin binding protein transpeptidase domain EP550_16460 PF00871 Acetokinase family EP550_16465 PF01515 Phosphate acetyl/butaryl transferase EP550_16465 PF07085 DRTGG domain EP550_16470 PF05681 Fumarate hydratase (Fumerase) EP550_16470 PF05683 Fumarase C-terminus EP550_16485 PF06689 ClpX C4-type zinc finger EP550_16485 PF07724 AAA domain (Cdc48 subfamily) EP550_16485 PF10431 C-terminal, D2-small domain, of ClpB protein EP550_16490 PF00574 Clp protease EP550_16495 PF05697 Bacterial trigger factor protein (TF) EP550_16495 PF05698 Bacterial trigger factor protein (TF) C-terminus EP550_16495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP550_16500 PF00593 TonB dependent receptor EP550_16500 PF07715 TonB-dependent Receptor Plug Domain EP550_16505 PF18331 PKHD-type hydroxylase C-terminal domain EP550_16505 PF13640 2OG-Fe(II) oxygenase superfamily EP550_16510 PF00682 HMGL-like EP550_16510 PF08502 LeuA allosteric (dimerisation) domain EP550_16515 PF00561 alpha/beta hydrolase fold EP550_16520 PF00561 alpha/beta hydrolase fold EP550_16520 PF07021 Methionine biosynthesis protein MetW EP550_16530 PF01725 Ham1 family EP550_16540 PF02416 mttA/Hcf106 family EP550_16545 PF02416 mttA/Hcf106 family EP550_16550 PF00902 Sec-independent protein translocase protein (TatC) EP550_16570 PF01790 Prolipoprotein diacylglyceryl transferase EP550_16585 PF00303 Thymidylate synthase EP550_16590 PF00186 Dihydrofolate reductase EP550_16600 PF01625 Peptide methionine sulfoxide reductase EP550_16610 PF01618 MotA/TolQ/ExbB proton channel family EP550_16620 PF00551 Formyl transferase EP550_16620 PF01842 ACT domain EP550_16630 PF00171 Aldehyde dehydrogenase family EP550_16635 PF00830 Ribosomal L28 family EP550_16640 PF00471 Ribosomal protein L33 EP550_16645 PF00999 Sodium/hydrogen exchanger family EP550_16645 PF02254 TrkA-N domain EP550_16665 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) EP550_16670 PF13361 UvrD-like helicase C-terminal domain EP550_16670 PF00580 UvrD/REP helicase N-terminal domain EP550_16685 PF01131 DNA topoisomerase EP550_16685 PF01751 Toprim domain EP550_16685 PF01396 Topoisomerase DNA binding C4 zinc finger EP550_16685 PF08272 Topoisomerase I zinc-ribbon-like EP550_16695 PF01638 HxlR-like helix-turn-helix EP550_16700 PF00107 Zinc-binding dehydrogenase EP550_16700 PF08240 Alcohol dehydrogenase GroES-like domain EP550_16715 PF01810 LysE type translocator EP550_16720 PF03279 Bacterial lipid A biosynthesis acyltransferase EP550_16730 PF00375 Sodium:dicarboxylate symporter family EP550_16740 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP550_16740 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP550_16760 PF01416 tRNA pseudouridine synthase EP550_16770 PF01176 Translation initiation factor 1A / IF-1 EP550_16785 PF00180 Isocitrate/isopropylmalate dehydrogenase EP550_16795 PF00694 Aconitase C-terminal domain EP550_16800 PF00330 Aconitase family (aconitate hydratase) EP550_16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_16810 PF03466 LysR substrate binding domain EP550_16830 PF00293 NUDIX domain EP550_16835 PF02896 PEP-utilising enzyme, TIM barrel domain EP550_16835 PF05524 PEP-utilising enzyme, N-terminal EP550_16835 PF01590 GAF domain EP550_16835 PF00391 PEP-utilising enzyme, mobile domain EP550_16840 PF00141 Peroxidase EP550_16845 PF12706 Beta-lactamase superfamily domain EP550_16850 PF03466 LysR substrate binding domain EP550_16850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_16855 PF13737 Transposase DDE domain EP550_16865 PF02798 Glutathione S-transferase, N-terminal domain EP550_16870 PF08279 HTH domain EP550_16870 PF13280 WYL domain EP550_16875 PF13419 Haloacid dehalogenase-like hydrolase EP550_16880 PF01479 S4 domain EP550_16880 PF00849 RNA pseudouridylate synthase EP550_16890 PF10150 Ribonuclease E/G family EP550_16890 PF00575 S1 RNA binding domain EP550_16890 PF12111 Polyribonucleotide phosphorylase C terminal EP550_16895 PF13193 AMP-binding enzyme C-terminal domain EP550_16895 PF00501 AMP-binding enzyme EP550_16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP550_16905 PF03466 LysR substrate binding domain EP550_16910 PF00106 short chain dehydrogenase EP550_16915 PF04055 Radical SAM superfamily EP550_16915 PF06969 HemN C-terminal domain EP550_16925 PF01554 MatE EP550_16930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_16930 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_16930 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP550_16935 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP550_16935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_16940 PF03109 ABC1 family EP550_16945 PF01197 Ribosomal protein L31 EP550_16960 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EP550_16980 PF03884 DNA gyrase inhibitor YacG EP550_16985 PF00753 Metallo-beta-lactamase superfamily EP550_16990 PF00762 Ferrochelatase EP550_17000 PF01177 Asp/Glu/Hydantoin racemase EP550_17015 PF01206 Sulfurtransferase TusA EP550_17020 PF00571 CBS domain EP550_17020 PF03471 Transporter associated domain EP550_17025 PF00795 Carbon-nitrogen hydrolase EP550_17030 PF01588 Putative tRNA binding domain EP550_17040 PF07963 Prokaryotic N-terminal methylation motif EP550_17040 PF08334 Type II secretion system (T2SS), protein G EP550_17045 PF00482 Type II secretion system (T2SS), protein F EP550_17050 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EP550_17050 PF18074 Primosomal protein N C-terminal domain EP550_17050 PF00270 DEAD/DEAH box helicase EP550_17050 PF00271 Helicase conserved C-terminal domain EP550_17050 PF17764 3′ DNA-binding domain (3′BD) EP550_17055 PF00999 Sodium/hydrogen exchanger family EP550_17055 PF02254 TrkA-N domain EP550_17060 PF01430 Hsp33 protein EP550_17070 PF00226 DnaJ domain EP550_17070 PF01556 DnaJ C terminal domain EP550_17080 PF01544 CorA-like Mg2+ transporter protein EP550_17085 PF00013 KH domain EP550_17085 PF00575 S1 RNA binding domain EP550_17085 PF01138 3' exoribonuclease family, domain 1 EP550_17085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EP550_17085 PF03725 3' exoribonuclease family, domain 2 EP550_17090 PF00312 Ribosomal protein S15 EP550_17100 PF13538 UvrD-like helicase C-terminal domain EP550_17105 PF00580 UvrD/REP helicase N-terminal domain EP550_17105 PF13361 UvrD-like helicase C-terminal domain EP550_17105 PF12705 PD-(D/E)XK nuclease superfamily EP550_17110 PF17946 RecC C-terminal domain EP550_17120 PF03976 Polyphosphate kinase 2 (PPK2) EP550_17130 PF01209 ubiE/COQ5 methyltransferase family EP550_17140 PF03109 ABC1 family EP550_17145 PF01494 FAD binding domain EP550_17150 PF01502 Phosphoribosyl-AMP cyclohydrolase EP550_17165 PF13244 Domain of unknown function (DUF4040) EP550_17165 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EP550_17165 PF00361 Proton-conducting membrane transporter EP550_17165 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP550_17170 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP550_17175 PF00361 Proton-conducting membrane transporter EP550_17185 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EP550_17195 PF02033 Ribosome-binding factor A EP550_17200 PF00009 Elongation factor Tu GTP binding domain EP550_17200 PF11987 Translation-initiation factor 2 EP550_17200 PF08364 Bacterial translation initiation factor IF-2 associated region EP550_17200 PF04760 Translation initiation factor IF-2, N-terminal region EP550_17205 PF13184 NusA-like KH domain EP550_17205 PF00575 S1 RNA binding domain EP550_17205 PF08529 NusA N-terminal domain EP550_17210 PF02576 RimP N-terminal domain EP550_17210 PF17384 RimP C-terminal SH3 domain EP550_17230 PF03840 Preprotein translocase SecG subunit EP550_17235 PF00121 Triosephosphate isomerase EP550_17240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EP550_17240 PF00437 Type II/IV secretion system protein EP550_17245 PF00482 Type II secretion system (T2SS), protein F EP550_17250 PF06750 Bacterial Peptidase A24 N-terminal domain EP550_17250 PF01478 Type IV leader peptidase family EP550_17255 PF01121 Dephospho-CoA kinase EP550_17265 PF00588 SpoU rRNA Methylase family EP550_17265 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP550_17270 PF06865 Pyrimidine/purine nucleoside phosphorylase EP550_17280 PF02463 RecF/RecN/SMC N terminal domain EP550_17285 PF02622 Uncharacterized ACR, COG1678 EP550_17290 PF03652 Holliday junction resolvase EP550_17295 PF13533 Biotin-lipoyl like EP550_17320 PF12833 Helix-turn-helix domain EP550_17320 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP550_17320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP550_17320 PF02805 Metal binding domain of Ada EP550_17325 PF01066 CDP-alcohol phosphatidyltransferase EP550_17335 PF08459 UvrC Helix-hairpin-helix N-terminal EP550_17335 PF02151 UvrB/uvrC motif EP550_17335 PF01541 GIY-YIG catalytic domain EP550_17360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP550_17360 PF00378 Enoyl-CoA hydratase/isomerase EP550_17360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP550_17365 PF00108 Thiolase, N-terminal domain EP550_17365 PF02803 Thiolase, C-terminal domain EP550_17385 PF09278 MerR, DNA binding EP550_17385 PF00376 MerR family regulatory protein EP550_17395 PF01323 DSBA-like thioredoxin domain EP550_17410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_17410 PF00183 Hsp90 protein EP550_17425 PF03553 Na+/H+ antiporter family EP550_17425 PF13726 Na+-H+ antiporter family EP550_17430 PF00561 alpha/beta hydrolase fold EP550_17455 PF04983 RNA polymerase Rpb1, domain 3 EP550_17455 PF04998 RNA polymerase Rpb1, domain 5 EP550_17455 PF05000 RNA polymerase Rpb1, domain 4 EP550_17455 PF04997 RNA polymerase Rpb1, domain 1 EP550_17455 PF00623 RNA polymerase Rpb1, domain 2 EP550_17460 PF04563 RNA polymerase beta subunit EP550_17460 PF04561 RNA polymerase Rpb2, domain 2 EP550_17460 PF04565 RNA polymerase Rpb2, domain 3 EP550_17460 PF10385 RNA polymerase beta subunit external 1 domain EP550_17460 PF00562 RNA polymerase Rpb2, domain 6 EP550_17460 PF04560 RNA polymerase Rpb2, domain 7 EP550_17465 PF00542 Ribosomal protein L7/L12 C-terminal domain EP550_17465 PF16320 Ribosomal protein L7/L12 dimerisation domain EP550_17470 PF00466 Ribosomal protein L10 EP550_17475 PF00687 Ribosomal protein L1p/L10e family EP550_17480 PF03946 Ribosomal protein L11, N-terminal domain EP550_17480 PF00298 Ribosomal protein L11, RNA binding domain EP550_17485 PF00467 KOW motif EP550_17485 PF02357 Transcription termination factor nusG EP550_17490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP550_17500 PF00009 Elongation factor Tu GTP binding domain EP550_17500 PF03144 Elongation factor Tu domain 2 EP550_17500 PF03143 Elongation factor Tu C-terminal domain EP550_17525 PF04715 Anthranilate synthase component I, N terminal region EP550_17525 PF00425 chorismate binding enzyme EP550_17530 PF13419 Haloacid dehalogenase-like hydrolase EP550_17535 PF00498 FHA domain EP550_17535 PF12401 Protein of unknown function (DUF2662) EP550_17540 PF00263 Bacterial type II and III secretion system protein EP550_17540 PF03958 Bacterial type II/III secretion system short domain EP550_17555 PF00816 H-NS histone family EP550_17580 PF03900 Porphobilinogen deaminase, C-terminal domain EP550_17580 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EP550_17585 PF04397 LytTr DNA-binding domain EP550_17585 PF00072 Response regulator receiver domain EP550_17590 PF06580 Histidine kinase EP550_17590 PF07694 5TMR of 5TMR-LYT EP550_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_17595 PF14698 Argininosuccinate lyase C-terminal EP550_17595 PF00206 Lyase EP550_17600 PF04362 Bacterial Fe(2+) trafficking EP550_17605 PF01895 PhoU domain EP550_17610 PF02321 Outer membrane efflux protein EP550_17615 PF00892 EamA-like transporter family EP550_17630 PF01964 Radical SAM ThiC family EP550_17630 PF13667 ThiC-associated domain EP550_17635 PF00293 NUDIX domain EP550_17640 PF00149 Calcineurin-like phosphoesterase EP550_17645 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP550_17650 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP550_17655 PF01098 Cell cycle protein EP550_17660 PF02875 Mur ligase family, glutamate ligase domain EP550_17660 PF08245 Mur ligase middle domain EP550_17670 PF02421 Ferrous iron transport protein B EP550_17670 PF07670 Nucleoside recognition EP550_17670 PF07664 Ferrous iron transport protein B C terminus EP550_17680 PF00589 Phage integrase family EP550_17680 PF02899 Phage integrase, N-terminal SAM-like domain EP550_17685 PF10411 Disulfide bond isomerase protein N-terminus EP550_17685 PF13098 Thioredoxin-like domain EP550_17690 PF01842 ACT domain EP550_17690 PF03447 Homoserine dehydrogenase, NAD binding domain EP550_17690 PF00742 Homoserine dehydrogenase EP550_17695 PF00291 Pyridoxal-phosphate dependent enzyme EP550_17700 PF00768 D-alanyl-D-alanine carboxypeptidase EP550_17705 PF00072 Response regulator receiver domain EP550_17705 PF00196 Bacterial regulatory proteins, luxR family EP550_17710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP550_17710 PF00512 His Kinase A (phospho-acceptor) domain EP550_17715 PF02954 Bacterial regulatory protein, Fis family EP550_17715 PF00072 Response regulator receiver domain EP550_17715 PF00158 Sigma-54 interaction domain EP550_17720 PF00595 PDZ domain EP550_17720 PF03572 Peptidase family S41 EP550_17725 PF01676 Metalloenzyme superfamily EP550_17725 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EP550_17730 PF03739 Lipopolysaccharide export system permease LptF/LptG EP550_17740 PF00883 Cytosol aminopeptidase family, catalytic domain EP550_17740 PF02789 Cytosol aminopeptidase family, N-terminal domain EP550_17760 PF00677 Lumazine binding domain EP550_17770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP550_17770 PF01872 RibD C-terminal domain EP550_17775 PF03477 ATP cone domain EP550_17780 PF00909 Ammonium Transporter Family EP550_17785 PF00543 Nitrogen regulatory protein P-II EP550_17795 PF01078 Magnesium chelatase, subunit ChlI EP550_17795 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP550_17805 PF01636 Phosphotransferase enzyme family EP550_17810 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EP550_17835 PF00440 Bacterial regulatory proteins, tetR family EP550_17835 PF02909 Tetracyclin repressor-like, C-terminal domain EP550_17840 PF07690 Major Facilitator Superfamily EP550_17850 PF00916 Sulfate permease family EP550_17850 PF01740 STAS domain EP550_17855 PF00582 Universal stress protein family EP550_17885 PF00665 Integrase core domain EP550_17895 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP550_17895 PF01078 Magnesium chelatase, subunit ChlI EP550_17900 PF00392 Bacterial regulatory proteins, gntR family EP550_17900 PF00155 Aminotransferase class I and II EP550_17910 PF00701 Dihydrodipicolinate synthetase family EP550_17925 PF03573 outer membrane porin, OprD family EP550_17930 PF00719 Inorganic pyrophosphatase EP550_17945 PF13193 AMP-binding enzyme C-terminal domain EP550_17945 PF00501 AMP-binding enzyme EP550_17950 PF00521 DNA gyrase/topoisomerase IV, subunit A EP550_17950 PF03989 DNA gyrase C-terminal domain, beta-propeller EP550_17955 PF07690 Major Facilitator Superfamily EP550_17960 PF03458 UPF0126 domain EP550_17965 PF02810 SEC-C motif EP550_17970 PF03741 Integral membrane protein TerC family EP550_17970 PF03471 Transporter associated domain EP550_17975 PF03641 Possible lysine decarboxylase EP550_17980 PF07690 Major Facilitator Superfamily EP550_17990 PF00817 impB/mucB/samB family EP550_17990 PF11799 impB/mucB/samB family C-terminal domain EP550_17990 PF11798 IMS family HHH motif EP550_18005 PF08497 Radical SAM N-terminal EP550_18005 PF04055 Radical SAM superfamily EP550_18005 PF11842 Domain of unknown function (DUF3362) EP550_18025 PF03358 NADPH-dependent FMN reductase EP550_18035 PF00291 Pyridoxal-phosphate dependent enzyme EP550_18070 PF00440 Bacterial regulatory proteins, tetR family EP550_18095 PF01327 Polypeptide deformylase EP550_18105 PF02481 DNA recombination-mediator protein A EP550_18105 PF17782 DprA winged helix domain EP550_18110 PF01300 Telomere recombination EP550_18115 PF00892 EamA-like transporter family EP550_18120 PF00440 Bacterial regulatory proteins, tetR family EP550_18125 PF07690 Major Facilitator Superfamily EP550_18135 PF00255 Glutathione peroxidase EP550_18145 PF11008 Protein of unknown function (DUF2846) EP550_18150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EP550_18155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP550_18155 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP550_18160 PF00231 ATP synthase EP550_18165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP550_18165 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP550_18165 PF00306 ATP synthase alpha/beta chain, C terminal domain EP550_18170 PF00213 ATP synthase delta (OSCP) subunit EP550_18175 PF00430 ATP synthase B/B' CF(0) EP550_18180 PF00137 ATP synthase subunit C EP550_18185 PF00119 ATP synthase A chain EP550_18205 PF00005 ABC transporter EP550_18210 PF00950 ABC 3 transport family EP550_18215 PF01810 LysE type translocator EP550_18220 PF04261 Dyp-type peroxidase family EP550_18225 PF03949 Malic enzyme, NAD binding domain EP550_18225 PF00390 Malic enzyme, N-terminal domain EP550_18230 PF00750 tRNA synthetases class I (R) EP550_18230 PF05746 DALR anticodon binding domain EP550_18230 PF03485 Arginyl tRNA synthetase N terminal domain EP550_18250 PF02678 Pirin EP550_18250 PF05726 Pirin C-terminal cupin domain EP550_18260 PF03551 Transcriptional regulator PadR-like family EP550_18280 PF01909 Nucleotidyltransferase domain EP550_18280 PF13427 Domain of unknown function (DUF4111) EP550_18285 PF00117 Glutamine amidotransferase class-I EP550_18285 PF00958 GMP synthase C terminal domain EP550_18285 PF02540 NAD synthase EP550_18290 PF04286 Protein of unknown function (DUF445) EP550_18295 PF07681 DoxX EP550_18300 PF09335 SNARE associated Golgi protein EP550_18315 PF13614 AAA domain EP550_18325 PF01722 BolA-like protein EP550_18335 PF01648 4'-phosphopantetheinyl transferase superfamily EP550_18340 PF16363 GDP-mannose 4,6 dehydratase EP550_18355 PF00550 Phosphopantetheine attachment site EP550_18355 PF00501 AMP-binding enzyme EP550_18355 PF00668 Condensation domain EP550_18355 PF00975 Thioesterase domain EP550_18355 PF13193 AMP-binding enzyme C-terminal domain EP550_18360 PF02801 Beta-ketoacyl synthase, C-terminal domain EP550_18360 PF08242 Methyltransferase domain EP550_18360 PF00550 Phosphopantetheine attachment site EP550_18360 PF14765 Polyketide synthase dehydratase EP550_18360 PF00975 Thioesterase domain EP550_18360 PF00109 Beta-ketoacyl synthase, N-terminal domain EP550_18360 PF16197 Ketoacyl-synthetase C-terminal extension EP550_18365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_18365 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_18365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_18370 PF00501 AMP-binding enzyme EP550_18375 PF00196 Bacterial regulatory proteins, luxR family EP550_18375 PF03472 Autoinducer binding domain EP550_18385 PF00765 Autoinducer synthase EP550_18390 PF00083 Sugar (and other) transporter EP550_18390 PF07690 Major Facilitator Superfamily EP550_18395 PF00378 Enoyl-CoA hydratase/isomerase EP550_18400 PF00378 Enoyl-CoA hydratase/isomerase EP550_18405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP550_18405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP550_18405 PF02770 Acyl-CoA dehydrogenase, middle domain EP550_18410 PF13193 AMP-binding enzyme C-terminal domain EP550_18410 PF00501 AMP-binding enzyme EP550_18415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP550_18415 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP550_18420 PF00171 Aldehyde dehydrogenase family EP550_18430 PF00324 Amino acid permease EP550_18435 PF00324 Amino acid permease EP550_18440 PF01042 Endoribonuclease L-PSP EP550_18445 PF01168 Alanine racemase, N-terminal domain EP550_18445 PF00842 Alanine racemase, C-terminal domain EP550_18450 PF01266 FAD dependent oxidoreductase EP550_18455 PF01037 Lrp/AsnC ligand binding domain EP550_18465 PF00593 TonB dependent receptor EP550_18465 PF07715 TonB-dependent Receptor Plug Domain EP550_18480 PF00849 RNA pseudouridylate synthase EP550_18530 PF00694 Aconitase C-terminal domain EP550_18530 PF00330 Aconitase family (aconitate hydratase) EP550_18535 PF00285 Citrate synthase, C-terminal domain EP550_18545 PF00392 Bacterial regulatory proteins, gntR family EP550_18545 PF07729 FCD domain EP550_18555 PF00155 Aminotransferase class I and II EP550_18560 PF01565 FAD binding domain EP550_18560 PF09330 D-lactate dehydrogenase, membrane binding EP550_18565 PF01070 FMN-dependent dehydrogenase EP550_18570 PF00392 Bacterial regulatory proteins, gntR family EP550_18570 PF07729 FCD domain EP550_18575 PF02652 L-lactate permease EP550_18580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP550_18580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP550_18580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP550_18580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP550_18590 PF16363 GDP-mannose 4,6 dehydratase EP550_18595 PF00342 Phosphoglucose isomerase EP550_18600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP550_18600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP550_18600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP550_18605 PF00483 Nucleotidyl transferase EP550_18610 PF02397 Bacterial sugar transferase EP550_18615 PF00535 Glycosyl transferase family 2 EP550_18620 PF00534 Glycosyl transferases group 1 EP550_18635 PF13439 Glycosyltransferase Family 4 EP550_18635 PF00534 Glycosyl transferases group 1 EP550_18640 PF14602 Hexapeptide repeat of succinyl-transferase EP550_18640 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_18640 PF12464 Maltose acetyltransferase EP550_18650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP550_18655 PF00132 Bacterial transferase hexapeptide (six repeats) EP550_18660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP550_18660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP550_18665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP550_18665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP550_18665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP550_18670 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EP550_18670 PF10531 SLBB domain EP550_18670 PF02563 Polysaccharide biosynthesis/export protein EP550_18675 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP550_18680 PF02706 Chain length determinant protein EP550_18680 PF13614 AAA domain EP550_18680 PF13807 G-rich domain on putative tyrosine kinase EP550_18685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP550_18685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP550_18690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP550_18690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP550_18695 PF03023 Lipid II flippase MurJ EP550_18700 PF01510 N-acetylmuramoyl-L-alanine amidase EP550_18705 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EP550_18705 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EP550_18715 PF05506 Domain of unknown function (DUF756) EP550_18715 PF04185 Phosphoesterase family EP550_18720 PF03725 3' exoribonuclease family, domain 2 EP550_18720 PF01138 3' exoribonuclease family, domain 1 EP550_18725 PF00487 Fatty acid desaturase EP550_18730 PF00175 Oxidoreductase NAD-binding domain EP550_18735 PF00440 Bacterial regulatory proteins, tetR family EP550_18740 PF00440 Bacterial regulatory proteins, tetR family EP550_18740 PF08360 QacR-like protein, C-terminal region EP550_18745 PF01323 DSBA-like thioredoxin domain EP550_18755 PF13419 Haloacid dehalogenase-like hydrolase EP550_18760 PF00106 short chain dehydrogenase EP550_18775 PF00583 Acetyltransferase (GNAT) family EP550_18775 PF00696 Amino acid kinase family EP550_18780 PF09084 NMT1/THI5 like EP550_18785 PF09084 NMT1/THI5 like EP550_18790 PF00296 Luciferase-like monooxygenase EP550_18795 PF00528 Binding-protein-dependent transport system inner membrane component EP550_18800 PF00005 ABC transporter EP550_18805 PF08362 YcdC-like protein, C-terminal region EP550_18805 PF00440 Bacterial regulatory proteins, tetR family EP550_18810 PF01048 Phosphorylase superfamily EP550_18820 PF01687 Riboflavin kinase EP550_18820 PF06574 FAD synthetase EP550_18825 PF00133 tRNA synthetases class I (I, L, M and V) EP550_18825 PF08264 Anticodon-binding domain of tRNA EP550_18825 PF06827 Zinc finger found in FPG and IleRS EP550_18830 PF01252 Signal peptidase (SPase) II EP550_18835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP550_18875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP550_18880 PF07859 alpha/beta hydrolase fold EP550_18905 PF01025 GrpE EP550_18910 PF00012 Hsp70 protein EP550_18930 PF13406 Transglycosylase SLT domain EP550_18935 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EP550_18935 PF02222 ATP-grasp domain EP550_18940 PF00731 AIR carboxylase EP550_18955 PF08245 Mur ligase middle domain EP550_18955 PF01225 Mur ligase family, catalytic domain EP550_18955 PF02875 Mur ligase family, glutamate ligase domain EP550_18965 PF01569 PAP2 superfamily EP550_18970 PF03741 Integral membrane protein TerC family EP550_18980 PF03738 Glutathionylspermidine synthase preATP-grasp EP550_18985 PF00355 Rieske [2Fe-2S] domain EP550_18990 PF01979 Amidohydrolase family EP550_18995 PF00156 Phosphoribosyl transferase domain EP550_19010 PF13098 Thioredoxin-like domain EP550_19010 PF10411 Disulfide bond isomerase protein N-terminus EP550_19015 PF01545 Cation efflux family EP550_19015 PF16916 Dimerisation domain of Zinc Transporter EP550_19020 PF02583 Metal-sensitive transcriptional repressor EP550_19025 PF12631 MnmE helical domain EP550_19025 PF01926 50S ribosome-binding GTPase EP550_19025 PF10396 GTP-binding protein TrmE N-terminus EP550_19030 PF14849 YidC periplasmic domain EP550_19030 PF02096 60Kd inner membrane protein EP550_19035 PF01809 Putative membrane protein insertion efficiency factor EP550_19040 PF00825 Ribonuclease P EP550_19045 PF00468 Ribosomal protein L34 EP550_19050 PF01051 Initiator Replication protein EP550_19075 PF07715 TonB-dependent Receptor Plug Domain EP550_19075 PF00593 TonB dependent receptor EP550_19085 PF00665 Integrase core domain EP550_19085 PF13936 Helix-turn-helix domain EP550_19090 PF01636 Phosphotransferase enzyme family EP550_19095 PF13936 Helix-turn-helix domain EP550_19095 PF00665 Integrase core domain