locus-tag	class	description
LN920_00175	COG5410	chromosome segregation
LN920_00320	COG0512	Glutamine amidotransferase of anthranilate synthase
LN920_00385	COG0302	gtp cyclohydrolase
LN920_00410	COG3739	integral membrane protein
LN920_00425	COG1169	isochorismate synthase
LN920_00435	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
LN920_00440	COG1132	(ABC) transporter
LN920_00445	COG1132	(ABC) transporter
LN920_00455	COG1535	isochorismatase
LN920_00455	COG3433	isochorismatase activity
LN920_00460	COG1021	2,3-dihydroxybenzoate-AMP ligase
LN920_00465	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LN920_00475	COG4774	siderophore transport
LN920_00480	COG4607	ABC-type enterochelin transport system periplasmic component
LN920_00485	COG4604	ABC transporter, ATP-binding protein
LN920_00490	COG4605	iron ion homeostasis
LN920_00495	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LN920_00500	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LN920_00515	COG2964	Protein conserved in bacteria
LN920_00525	COG1741	Belongs to the pirin family
LN920_00545	COG1309	transcriptional regulator
LN920_00555	COG4948	Mandelate Racemase Muconate Lactonizing
LN920_00560	COG2814	Major facilitator Superfamily
LN920_00595	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LN920_00595	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
LN920_00600	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LN920_00610	COG1012	belongs to the aldehyde dehydrogenase family
LN920_00620	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LN920_00625	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LN920_00630	COG0583	DNA-binding transcription factor activity
LN920_00635	COG1113	amino acid transport
LN920_00655	COG2508	Transcriptional regulator
LN920_00655	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LN920_00690	COG2879	small protein
LN920_00695	COG1966	Carbon starvation protein
LN920_00740	COG1067	ATP-dependent peptidase activity
LN920_00770	COG1686	Belongs to the peptidase S11 family
LN920_00775	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LN920_00810	COG0616	signal peptide processing
LN920_00815	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LN920_00825	COG0573	inorganic phosphate transmembrane transporter activity
LN920_00830	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LN920_00835	COG1113	amino acid transport
LN920_00840	COG3961	Belongs to the TPP enzyme family
LN920_00845	COG1522	sequence-specific DNA binding
LN920_00855	COG0076	glutamate decarboxylase activity
LN920_00860	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LN920_00870	COG1309	transcriptional regulator
LN920_00885	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LN920_00920	COG0352	thiamine-phosphate diphosphorylase activity
LN920_00945	COG0612	Peptidase, M16
LN920_00955	COG1823	symporter activity
LN920_00960	COG0583	DNA-binding transcription factor activity
LN920_00965	COG0477	Major facilitator Superfamily
LN920_00990	COG1187	pseudouridine synthase activity
LN920_01005	COG1686	Belongs to the peptidase S11 family
LN920_01010	COG1252	NADH dehydrogenase
LN920_01020	COG0415	Belongs to the DNA photolyase family
LN920_01035	COG1215	transferase activity, transferring glycosyl groups
LN920_01065	COG2070	2-Nitropropane dioxygenase
LN920_01120	COG0556	nucleotide-excision repair
LN920_01140	COG0436	Aminotransferase
LN920_01170	COG4221	oxidoreductase activity
LN920_01180	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LN920_01185	COG1381	Involved in DNA repair and RecF pathway recombination
LN920_01195	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LN920_01210	COG0681	Belongs to the peptidase S26 family
LN920_01225	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LN920_01245	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LN920_01250	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LN920_01255	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LN920_01265	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LN920_01270	COG4208	sulfate ABC transporter
LN920_01275	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LN920_01280	COG0583	DNA-binding transcription factor activity
LN920_01285	COG4625	pathogenesis
LN920_01300	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LN920_01315	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LN920_01325	COG1051	belongs to the nudix hydrolase family
LN920_01325	COG1056	cytidyltransferase-related domain
LN920_01330	COG1024	Enoyl-CoA hydratase
LN920_01340	COG2814	Major facilitator Superfamily
LN920_01345	COG0047	phosphoribosylformylglycinamidine synthase activity
LN920_01345	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LN920_01365	COG1473	amidohydrolase
LN920_01370	COG0824	Thioesterase
LN920_01390	COG0823	Involved in the tonB-independent uptake of proteins
LN920_01410	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LN920_01445	COG0628	permease
LN920_01455	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LN920_01460	COG0596	Alpha beta hydrolase
LN920_01465	COG0616	signal peptide processing
LN920_01465	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LN920_01475	COG0658	competence protein
LN920_01475	COG2333	competence protein COMEC
LN920_01480	COG1136	(ABC) transporter
LN920_01485	COG4591	ABC-type transport system involved in lipoprotein release permease component
LN920_01520	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LN920_01540	COG0463	Glycosyl transferase, family 2
LN920_01570	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LN920_01575	COG1280	lysine exporter protein (LysE YggA)
LN920_01585	COG0019	diaminopimelate decarboxylase activity
LN920_01595	COG1113	amino acid transport
LN920_01610	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
LN920_01620	COG3339	Conserved Protein
LN920_01625	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LN920_01630	COG0243	molybdopterin cofactor binding
LN920_01635	COG1929	Belongs to the glycerate kinase type-1 family
LN920_01650	COG0778	Nitroreductase
LN920_01680	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LN920_01695	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LN920_01715	COG0741	lytic transglycosylase activity
LN920_01735	COG0584	glycerophosphoryl diester phosphodiesterase
LN920_01740	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LN920_01765	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LN920_01770	COG1597	lipid kinase activity
LN920_01785	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LN920_01790	COG0477	Major facilitator Superfamily
LN920_01840	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LN920_01845	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LN920_01870	COG0505	Belongs to the CarA family
LN920_01890	COG0589	response to stress
LN920_01905	COG2843	Capsule synthesis protein
LN920_01925	COG2321	neutral zinc metallopeptidase
LN920_01930	COG2354	Protein conserved in bacteria
LN920_01950	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LN920_01975	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LN920_01980	COG1053	succinate dehydrogenase
LN920_01985	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LN920_01990	COG2009	succinate dehydrogenase
LN920_02035	COG2921	Belongs to the UPF0250 family
LN920_02040	COG0321	lipoyl(octanoyl) transferase activity
LN920_02055	COG0531	amino acid
LN920_02065	COG1733	regulation of RNA biosynthetic process
LN920_02070	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LN920_02075	COG1648	precorrin-2 dehydrogenase activity
LN920_02075	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LN920_02090	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LN920_02120	COG0671	phosphoesterase, PA-phosphatase related
LN920_02125	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LN920_02135	COG1538	Outer membrane efflux protein
LN920_02140	COG0393	Putative heavy-metal-binding
LN920_02145	COG0393	Putative heavy-metal-binding
LN920_02155	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_02165	COG0525	valine-tRNA ligase activity
LN920_02185	COG0583	DNA-binding transcription factor activity
LN920_02190	COG0004	ammonium transporteR
LN920_02200	COG0642	Histidine kinase
LN920_02205	COG0745	RESPONSE REGULATOR receiver
LN920_02210	COG2194	sulfuric ester hydrolase activity
LN920_02230	COG1752	Esterase of the alpha-beta hydrolase superfamily
LN920_02245	COG2315	Protein conserved in bacteria
LN920_02250	COG0142	geranyltranstransferase activity
LN920_02255	COG2828	Protein conserved in bacteria
LN920_02260	COG1113	amino acid transport
LN920_02280	COG2207	Transcriptional regulator
LN920_02305	COG2249	NAD(P)H dehydrogenase (quinone) activity
LN920_02315	COG0560	Phosphoserine phosphatase
LN920_02325	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LN920_02335	COG1530	ribonuclease E activity
LN920_02340	COG0424	maF-like protein
LN920_02345	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LN920_02350	COG1792	Involved in formation and maintenance of cell shape
LN920_02355	COG1077	Cell shape determining protein MreB Mrl
LN920_02360	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LN920_02370	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LN920_02400	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
LN920_02405	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LN920_02410	COG1752	Esterase of the alpha-beta hydrolase superfamily
LN920_02415	COG1115	amino acid carrier protein
LN920_02435	COG2814	Major facilitator Superfamily
LN920_02440	COG1289	transmembrane transporter activity
LN920_02450	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LN920_02490	COG1376	ErfK ybiS ycfS ynhG family protein
LN920_02495	COG2832	Protein of unknown function (DUF454)
LN920_02505	COG5510	response to toxic substance
LN920_02525	COG0840	transmembrane signaling receptor activity
LN920_02565	COG3422	double-strand break repair
LN920_02570	COG2824	Alkylphosphonate utilization operon protein PhnA
LN920_02575	COG3189	MarR family transcriptional regulator
LN920_02585	COG0354	folic acid binding
LN920_02590	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LN920_02600	COG0679	Auxin Efflux Carrier
LN920_02605	COG1902	pentaerythritol trinitrate reductase activity
LN920_02610	COG4772	TonB-dependent receptor
LN920_02615	COG2094	Belongs to the DNA glycosylase MPG family
LN920_02640	COG1217	gtp-binding protein TYPA
LN920_02645	COG2233	PERMEase
LN920_02655	COG0833	amino acid
LN920_02660	COG1690	Belongs to the RtcB family
LN920_02670	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
LN920_02670	COG2885	chlorophyll binding
LN920_02680	COG0183	Belongs to the thiolase family
LN920_02705	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LN920_02725	COG2207	Transcriptional regulator
LN920_02730	COG0183	Belongs to the thiolase family
LN920_02760	COG1272	protein, Hemolysin III
LN920_02765	COG0477	Major facilitator Superfamily
LN920_02780	COG0450	alkyl hydroperoxide reductase
LN920_02800	COG0285	dihydrofolate synthase activity
LN920_02850	COG2096	Adenosyltransferase
LN920_02870	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LN920_02875	COG0745	RESPONSE REGULATOR receiver
LN920_02880	COG2205	protein histidine kinase activity
LN920_02890	COG1960	acyl-CoA dehydrogenase activity
LN920_02895	COG1960	acyl-CoA dehydrogenase activity
LN920_02900	COG0583	DNA-binding transcription factor activity
LN920_02905	COG0625	glutathione transferase activity
LN920_02970	COG0438	transferase activity, transferring glycosyl groups
LN920_02975	COG0463	Glycosyl transferase, family 2
LN920_02980	COG0726	polysaccharide deacetylase
LN920_03000	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LN920_03005	COG2205	protein histidine kinase activity
LN920_03055	COG1862	Preprotein translocase
LN920_03065	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LN920_03070	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LN920_03080	COG3781	membrane
LN920_03085	COG0613	PHP domain protein
LN920_03095	COG2350	Protein conserved in bacteria
LN920_03125	COG1607	acyl-coa hydrolase
LN920_03185	COG2199	diguanylate cyclase activity
LN920_03195	COG1408	metallophosphoesterase
LN920_03200	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LN920_03210	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LN920_03340	COG1598	PFAM Uncharacterised protein family UPF0150
LN920_03445	COG5410	chromosome segregation
LN920_03530	COG4197	protein conserved in bacteria, prophage-related
LN920_03535	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LN920_03605	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LN920_03610	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LN920_03625	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LN920_03635	COG2969	positive regulation of protein catabolic process
LN920_03655	COG1960	acyl-CoA dehydrogenase activity
LN920_03660	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LN920_03675	COG1309	transcriptional regulator
LN920_03680	COG1960	acyl-CoA dehydrogenase activity
LN920_03725	COG1183	phosphatidylcholine synthase activity
LN920_03730	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LN920_03765	COG0741	lytic transglycosylase activity
LN920_03765	COG0739	heme binding
LN920_03765	COG1196	nuclear chromosome segregation
LN920_03775	COG1702	phosphate starvation-inducible protein PhoH
LN920_03810	COG1295	ribonuclease BN
LN920_03815	COG0697	spore germination
LN920_03820	COG2169	Transcriptional regulator
LN920_03825	COG0179	Fumarylacetoacetate (FAA) hydrolase
LN920_03870	COG0557	exoribonuclease II activity
LN920_03875	COG0339	signal peptide processing
LN920_03880	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LN920_03910	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
LN920_03915	COG1960	acyl-CoA dehydrogenase activity
LN920_04070	COG0626	cystathionine gamma-synthase activity
LN920_04075	COG0433	COG0433 Predicted ATPase
LN920_04080	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LN920_04080	COG1017	nitric oxide dioxygenase activity
LN920_04085	COG1959	2 iron, 2 sulfur cluster binding
LN920_04100	COG1301	dicarboxylic acid transport
LN920_04105	COG1946	Acyl-CoA thioesterase
LN920_04125	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LN920_04130	COG1040	competence protein
LN920_04135	COG0494	nUDIX hydrolase
LN920_04145	COG0598	Magnesium transport protein CorA
LN920_04155	COG2854	intermembrane phospholipid transfer
LN920_04165	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LN920_04170	COG1127	ABC transporter
LN920_04180	COG0513	Belongs to the DEAD box helicase family
LN920_04200	COG0408	coproporphyrinogen oxidase activity
LN920_04215	COG1960	acyl-CoA dehydrogenase activity
LN920_04225	COG1983	PspC domain protein
LN920_04230	COG0517	IMP dehydrogenase activity
LN920_04275	COG0583	DNA-binding transcription factor activity
LN920_04315	COG1012	belongs to the aldehyde dehydrogenase family
LN920_04325	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LN920_04330	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LN920_04335	COG0833	amino acid
LN920_04365	COG1192	Involved in chromosome partitioning
LN920_04370	COG0628	permease
LN920_04380	COG1289	transmembrane transporter activity
LN920_04395	COG2249	NAD(P)H dehydrogenase (quinone) activity
LN920_04400	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LN920_04410	COG0277	FAD linked oxidase domain protein
LN920_04415	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LN920_04440	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LN920_04445	COG5380	lipid catabolic process
LN920_04465	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LN920_04515	COG0194	GDP metabolic process
LN920_04530	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LN920_04550	COG3307	-O-antigen
LN920_04570	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
LN920_04575	COG1704	LemA family
LN920_04585	COG0493	'glutamate synthase
LN920_04590	COG0067	glutamate synthase
LN920_04590	COG0069	glutamate synthase activity
LN920_04590	COG0070	glutamate synthase
LN920_04640	COG2226	methyltransferase
LN920_04655	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LN920_04660	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LN920_04705	COG0833	amino acid
LN920_04790	COG0488	(ABC) transporter
LN920_04795	COG2873	o-acetylhomoserine
LN920_04800	COG4221	oxidoreductase activity
LN920_04805	COG0659	secondary active sulfate transmembrane transporter activity
LN920_04830	COG0427	acetyl-CoA hydrolase
LN920_04860	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LN920_04890	COG2329	Antibiotic biosynthesis monooxygenase
LN920_04905	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LN920_04970	COG2249	NAD(P)H dehydrogenase (quinone) activity
LN920_04975	COG1733	regulation of RNA biosynthetic process
LN920_05010	COG0667	Aldo Keto reductase
LN920_05030	COG0583	DNA-binding transcription factor activity
LN920_05035	COG2814	Major facilitator Superfamily
LN920_05065	COG1335	isochorismatase
LN920_05075	COG1012	belongs to the aldehyde dehydrogenase family
LN920_05080	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LN920_05090	COG1113	amino acid transport
LN920_05100	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LN920_05115	COG2814	Major facilitator Superfamily
LN920_05125	COG0351	phosphomethylpyrimidine kinase
LN920_05125	COG0352	thiamine-phosphate diphosphorylase activity
LN920_05125	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LN920_05145	COG1309	transcriptional regulator
LN920_05150	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LN920_05170	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LN920_05180	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LN920_05185	COG3162	membrane
LN920_05215	COG3328	transposase activity
LN920_05220	COG1522	sequence-specific DNA binding
LN920_05225	COG1335	isochorismatase
LN920_05230	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LN920_05240	COG0668	transmembrane transport
LN920_05245	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LN920_05250	COG1519	Transferase
LN920_05255	COG1902	pentaerythritol trinitrate reductase activity
LN920_05275	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LN920_05300	COG0426	domain, Protein
LN920_05300	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LN920_05305	COG4774	siderophore transport
LN920_05310	COG2119	membrane
LN920_05320	COG0508	dehydrogenase complex catalyzes the overall conversion of
LN920_05330	COG4942	peptidase
LN920_05345	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LN920_05355	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LN920_05375	COG0189	ligase activity
LN920_05395	COG0708	Exodeoxyribonuclease III
LN920_05400	COG1393	Belongs to the ArsC family
LN920_05415	COG3706	GGDEF domain
LN920_05450	COG2351	hydroxyisourate hydrolase activity
LN920_05455	COG2233	PERMEase
LN920_05465	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LN920_05475	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
LN920_05480	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_05490	COG3150	esterase
LN920_05505	COG0791	NLP P60 protein
LN920_05505	COG1388	LysM domain
LN920_05520	COG2918	glutathione biosynthetic process
LN920_05535	COG2733	membrane
LN920_05540	COG0436	Aminotransferase
LN920_05545	COG0534	Mate efflux family protein
LN920_05645	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LN920_05650	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LN920_05660	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LN920_05665	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LN920_05680	COG0010	Belongs to the arginase family
LN920_05710	COG2188	Transcriptional regulator
LN920_05720	COG0523	cobalamin synthesis protein
LN920_05730	COG1113	amino acid transport
LN920_05740	COG0625	glutathione transferase activity
LN920_05760	COG1683	Conserved Protein
LN920_05765	COG0534	Mate efflux family protein
LN920_05770	COG0385	Bile acid
LN920_05775	COG1335	isochorismatase
LN920_05780	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LN920_05800	COG2116	formate transmembrane transporter activity
LN920_05805	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LN920_05810	COG2133	pyrroloquinoline quinone binding
LN920_05815	COG2983	Belongs to the UPF0260 family
LN920_05835	COG1194	a g-specific adenine glycosylase
LN920_05850	COG2818	Glycosylase
LN920_05855	COG1064	alcohol dehydrogenase
LN920_05860	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LN920_05875	COG0583	DNA-binding transcription factor activity
LN920_05880	COG0656	L-ascorbic acid biosynthetic process
LN920_05885	COG2814	Major facilitator Superfamily
LN920_05920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LN920_05935	COG2233	PERMEase
LN920_05975	COG0733	neurotransmitter:sodium symporter activity
LN920_06015	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LN920_06020	COG0657	acetylesterase activity
LN920_06040	COG0583	DNA-binding transcription factor activity
LN920_06070	COG2951	lytic endotransglycosylase activity
LN920_06075	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LN920_06090	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LN920_06100	COG0671	phosphoesterase, PA-phosphatase related
LN920_06105	COG0861	Integral membrane protein TerC family
LN920_06115	COG0754	glutathionylspermidine amidase activity
LN920_06125	COG0402	S-adenosylhomocysteine deaminase activity
LN920_06140	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LN920_06145	COG1230	cation diffusion facilitator family transporter
LN920_06160	COG0706	membrane insertase activity
LN920_06185	COG0592	DNA-directed DNA polymerase activity
LN920_06195	COG0187	DNA topoisomerase II activity
LN920_06205	COG0586	Pfam SNARE associated Golgi protein
LN920_06210	COG0488	(ABC) transporter
LN920_06240	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LN920_06245	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LN920_06285	COG1047	Peptidyl-prolyl cis-trans
LN920_06295	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LN920_06300	COG0196	riboflavin kinase activity
LN920_06310	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LN920_06315	COG1309	transcriptional regulator
LN920_06320	COG1116	anion transmembrane transporter activity
LN920_06325	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LN920_06330	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LN920_06335	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LN920_06340	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LN920_06360	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_06365	COG0546	phosphoglycolate phosphatase activity
LN920_06425	COG3023	N-Acetylmuramoyl-L-alanine amidase
LN920_06430	COG0728	peptidoglycan biosynthetic process
LN920_06455	COG1596	polysaccharide export
LN920_06460	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
LN920_06465	COG1086	Polysaccharide biosynthesis protein
LN920_06470	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LN920_06475	COG1083	cytidylyl-transferase
LN920_06490	COG2089	acid synthase
LN920_06520	COG1216	Glycosyl transferase, family 2
LN920_06525	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LN920_06530	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LN920_06545	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LN920_06550	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LN920_06560	COG2186	Transcriptional regulator
LN920_06570	COG0277	FAD linked oxidase domain protein
LN920_06575	COG1448	Aminotransferase
LN920_06585	COG1802	Transcriptional regulator
LN920_06600	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LN920_06660	COG0564	pseudouridine synthase activity
LN920_06700	COG0251	oxidation-reduction process
LN920_06705	COG1113	amino acid transport
LN920_06710	COG1113	amino acid transport
LN920_06730	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LN920_06735	COG1960	acyl-CoA dehydrogenase activity
LN920_06740	COG1024	Enoyl-CoA hydratase
LN920_06745	COG1024	Enoyl-CoA hydratase
LN920_06750	COG0477	Major facilitator Superfamily
LN920_06755	COG3916	Acyl-homoserine-lactone synthase
LN920_06765	COG2197	response regulator
LN920_06775	COG1960	acyl-CoA dehydrogenase activity
LN920_06780	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LN920_06780	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LN920_06780	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
LN920_06780	COG3321	synthase
LN920_06800	COG2267	carboxylic ester hydrolase activity
LN920_06810	COG2826	transposase and inactivated derivatives, IS30 family
LN920_06885	COG2826	transposase and inactivated derivatives, IS30 family
LN920_06900	COG0271	Belongs to the BolA IbaG family
LN920_06910	COG1192	Involved in chromosome partitioning
LN920_06925	COG0586	Pfam SNARE associated Golgi protein
LN920_06930	COG2259	Doxx family
LN920_06935	COG4399	Belongs to the UPF0754 family
LN920_06940	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LN920_06940	COG0519	Catalyzes the synthesis of GMP from XMP
LN920_06985	COG0281	malic enzyme
LN920_06995	COG2837	iron assimilation
LN920_07000	COG1280	lysine exporter protein (LysE YggA)
LN920_07005	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LN920_07010	COG1121	(ABC) transporter
LN920_07075	COG0386	Belongs to the glutathione peroxidase family
LN920_07090	COG1309	transcriptional regulator
LN920_07095	COG0697	spore germination
LN920_07105	COG0758	DNA mediated transformation
LN920_07175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LN920_07185	COG0655	NAD(P)H dehydrogenase (quinone) activity
LN920_07225	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LN920_07245	COG1253	flavin adenine dinucleotide binding
LN920_07255	COG2860	membrane
LN920_07260	COG0477	Major facilitator Superfamily
LN920_07270	COG0318	PFAM AMP-dependent synthetase and ligase
LN920_07285	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LN920_07305	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LN920_07315	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LN920_07350	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LN920_07390	COG0589	response to stress
LN920_07395	COG0659	secondary active sulfate transmembrane transporter activity
LN920_07415	COG0347	Belongs to the P(II) protein family
LN920_07420	COG0004	ammonium transporteR
LN920_07430	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LN920_07430	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LN920_07470	COG0795	lipopolysaccharide-transporting ATPase activity
LN920_07475	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LN920_07480	COG0793	Belongs to the peptidase S41A family
LN920_07495	COG2197	response regulator
LN920_07505	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LN920_07515	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LN920_07520	COG4974	Belongs to the 'phage' integrase family
LN920_07545	COG0772	Belongs to the SEDS family
LN920_07550	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LN920_07555	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LN920_07560	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LN920_07585	COG0697	spore germination
LN920_07590	COG1538	Outer membrane efflux protein
LN920_07610	COG3275	phosphorelay sensor kinase activity
LN920_07620	COG0181	hydroxymethylbilane synthase activity
LN920_07665	COG1716	ATPase activity
LN920_07670	COG0546	phosphoglycolate phosphatase activity
LN920_07775	COG0596	Alpha beta hydrolase
LN920_07780	COG2056	Na+-H+ antiporter family
LN920_07795	COG0326	Molecular chaperone. Has ATPase activity
LN920_07810	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LN920_07875	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LN920_07880	COG2169	Transcriptional regulator
LN920_07880	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LN920_07910	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LN920_07920	COG0497	DNA recombination
LN920_07935	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LN920_07945	COG0237	dephospho-CoA kinase activity
LN920_07950	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LN920_08000	COG0195	Participates in both transcription termination and antitermination
LN920_08015	COG1320	monovalent cation:proton antiporter activity
LN920_08020	COG2212	antiporter activity
LN920_08025	COG1863	multisubunit Na H antiporter MnhE subunit
LN920_08030	COG0651	ATP synthesis coupled electron transport
LN920_08035	COG1006	Multisubunit Na H antiporter MnhC subunit
LN920_08040	COG2111	Na H antiporter
LN920_08040	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LN920_08055	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LN920_08060	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LN920_08075	COG2226	methyltransferase
LN920_08095	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LN920_08100	COG1074	ATP-dependent DNA helicase activity
LN920_08105	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LN920_08110	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LN920_08125	COG0598	Magnesium transport protein CorA
LN920_08130	COG0789	Transcriptional regulator
LN920_08135	COG0484	heat shock protein binding
LN920_08145	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LN920_08150	COG0475	glutathione-regulated potassium exporter activity
LN920_08150	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LN920_08155	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LN920_08175	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LN920_08185	COG4535	Mg2 and Co2 transporter CorC
LN920_08190	COG0425	Belongs to the sulfur carrier protein TusA family
LN920_08195	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
LN920_08195	COG0644	oxidoreductase
LN920_08205	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LN920_08220	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LN920_08225	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
LN920_08265	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LN920_08280	COG0534	Mate efflux family protein
LN920_08290	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LN920_08295	COG4221	oxidoreductase activity
LN920_08300	COG0583	DNA-binding transcription factor activity
LN920_08315	COG0318	PFAM AMP-dependent synthetase and ligase
LN920_08320	COG1530	ribonuclease E activity
LN920_08330	COG0546	phosphoglycolate phosphatase activity
LN920_08335	COG2378	regulation of single-species biofilm formation
LN920_08340	COG0625	glutathione transferase activity
LN920_08350	COG0583	DNA-binding transcription factor activity
LN920_08415	COG0473	3-isopropylmalate dehydrogenase activity
LN920_08470	COG1301	dicarboxylic acid transport
LN920_08480	COG1560	Kdo2-lipid A biosynthetic process
LN920_08485	COG1280	lysine exporter protein (LysE YggA)
LN920_08490	COG0488	(ABC) transporter
LN920_08495	COG2900	Belongs to the SlyX family
LN920_08505	COG1733	regulation of RNA biosynthetic process
LN920_08530	COG0210	DNA helicase
LN920_08535	COG0724	RNA recognition motif
LN920_08555	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LN920_08555	COG4651	solute:proton antiporter activity
LN920_08580	COG0788	formyltetrahydrofolate deformylase activity
LN920_08680	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LN920_08680	COG2813	Specifically methylates the guanine in position
LN920_08690	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LN920_08700	COG4774	siderophore transport
LN920_08710	COG0740	serine-type endopeptidase activity
LN920_08730	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
LN920_08730	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
LN920_08735	COG0857	belongs to the CobB CobQ family
LN920_08735	COG0280	phosphate acetyltransferase
LN920_08740	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LN920_08750	COG0800	Aldolase
LN920_08760	COG3265	gluconokinase activity
LN920_08765	COG1012	belongs to the aldehyde dehydrogenase family
LN920_08775	COG2267	carboxylic ester hydrolase activity
LN920_08790	COG0793	Belongs to the peptidase S41A family
LN920_08825	COG1426	Protein conserved in bacteria
LN920_08870	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LN920_08880	COG0318	PFAM AMP-dependent synthetase and ligase
LN920_08895	COG2986	histidine ammonia-lyase
LN920_08935	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_08940	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LN920_08960	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LN920_08970	COG1162	GTPase activity
LN920_08975	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LN920_08990	COG1538	Outer membrane efflux protein
LN920_08995	COG0577	efflux transmembrane transporter activity
LN920_08995	COG1136	(ABC) transporter
LN920_09000	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LN920_09025	COG0028	Belongs to the TPP enzyme family
LN920_09030	COG0440	acetolactate synthase activity
LN920_09060	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LN920_09075	COG0084	hydrolase, TatD family'
LN920_09090	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LN920_09100	COG0583	DNA-binding transcription factor activity
LN920_09110	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LN920_09115	COG2814	Major facilitator Superfamily
LN920_09125	COG0697	spore germination
LN920_09155	COG3622	Belongs to the hyi family
LN920_09175	COG1024	Enoyl-CoA hydratase
LN920_09180	COG0784	Response regulator, receiver
LN920_09180	COG2205	protein histidine kinase activity
LN920_09180	COG5002	protein histidine kinase activity
LN920_09200	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LN920_09210	COG3956	TIGRFAM MazG family protein
LN920_09215	COG1555	photosystem II stabilization
LN920_09220	COG0617	tRNA 3'-terminal CCA addition
LN920_09225	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LN920_09245	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LN920_09250	COG3028	Belongs to the UPF0307 family
LN920_09255	COG0318	PFAM AMP-dependent synthetase and ligase
LN920_09270	COG0625	glutathione transferase activity
LN920_09275	COG1238	metal cluster binding
LN920_09320	COG0072	phenylalanine-tRNA ligase activity
LN920_09350	COG0248	Ppx GppA phosphatase
LN920_09360	COG0037	tRNA processing
LN920_09400	COG1764	response to oxidative stress
LN920_09405	COG1846	Transcriptional regulator
LN920_09415	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LN920_09475	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LN920_09480	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LN920_09485	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LN920_09495	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LN920_09545	COG1214	PFAM Peptidase M22, glycoprotease
LN920_09570	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LN920_09575	COG0561	phosphatase activity
LN920_09585	COG2132	Multicopper oxidase
LN920_09590	COG3667	copper resistance
LN920_09605	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LN920_09610	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LN920_09615	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LN920_09645	COG1063	alcohol dehydrogenase
LN920_09650	COG0583	DNA-binding transcription factor activity
LN920_09655	COG1960	acyl-CoA dehydrogenase activity
LN920_09660	COG2814	Major facilitator Superfamily
LN920_09665	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LN920_09675	COG1053	succinate dehydrogenase
LN920_09680	COG0583	DNA-binding transcription factor activity
LN920_09695	COG0583	DNA-binding transcription factor activity
LN920_09725	COG0583	DNA-binding transcription factor activity
LN920_09740	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LN920_09765	COG0384	phenazine biosynthesis protein PhzF
LN920_09860	COG2205	protein histidine kinase activity
LN920_09870	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LN920_09890	COG0745	RESPONSE REGULATOR receiver
LN920_09930	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
LN920_09960	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LN920_09965	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LN920_09985	COG0583	DNA-binding transcription factor activity
LN920_10005	COG0668	transmembrane transport
LN920_10015	COG2081	HI0933 family
LN920_10020	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LN920_10050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LN920_10050	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LN920_10060	COG0489	protein tyrosine kinase activity
LN920_10110	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LN920_10120	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LN920_10135	COG0730	response to heat
LN920_10145	COG1196	nuclear chromosome segregation
LN920_10165	COG2223	nitrite transmembrane transporter activity
LN920_10170	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
LN920_10175	COG1877	trehalose-phosphatase activity
LN920_10180	COG0596	Alpha beta hydrolase
LN920_10180	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LN920_10180	COG2226	methyltransferase
LN920_10195	COG4106	trans-aconitate 2-methyltransferase activity
LN920_10210	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LN920_10215	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
LN920_10220	COG0009	L-threonylcarbamoyladenylate synthase
LN920_10225	COG3101	peptidyl-lysine hydroxylation
LN920_10230	COG1399	metal-binding, possibly nucleic acid-binding protein
LN920_10255	COG1652	LysM domain
LN920_10260	COG0351	phosphomethylpyrimidine kinase
LN920_10260	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LN920_10260	COG0352	thiamine-phosphate diphosphorylase activity
LN920_10270	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LN920_10300	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LN920_10330	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LN920_10345	COG0358	DNA primase activity
LN920_10355	COG0564	pseudouridine synthase activity
LN920_10380	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LN920_10400	COG0583	DNA-binding transcription factor activity
LN920_10405	COG0473	3-isopropylmalate dehydrogenase activity
LN920_10415	COG0657	acetylesterase activity
LN920_10425	COG1012	belongs to the aldehyde dehydrogenase family
LN920_10445	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LN920_10445	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LN920_10460	COG1981	membrane
LN920_10505	COG0456	acetyltransferase
LN920_10515	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LN920_10520	COG0492	ferredoxin-NADP+ reductase activity
LN920_10525	COG1674	ftsk spoiiie
LN920_10525	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LN920_10530	COG1280	lysine exporter protein (LysE YggA)
LN920_10555	COG2894	cell division
LN920_10570	COG0204	Acyl-transferase
LN920_10575	COG2885	chlorophyll binding
LN920_10580	COG0210	DNA helicase
LN920_10590	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LN920_10605	COG0121	glutamine amidotransferase
LN920_10625	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LN920_10630	COG0735	belongs to the Fur family
LN920_10655	COG0420	3'-5' exonuclease activity
LN920_10675	COG1090	epimerase
LN920_10690	COG2050	protein possibly involved in aromatic compounds catabolism
LN920_10700	COG2814	Major facilitator Superfamily
LN920_10705	COG0405	Gamma-glutamyltransferase
LN920_10750	COG0477	Major facilitator Superfamily
LN920_10755	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LN920_10780	COG0531	amino acid
LN920_10785	COG2040	homocysteine
LN920_10810	COG1309	transcriptional regulator
LN920_10815	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LN920_10820	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LN920_10830	COG1607	acyl-coa hydrolase
LN920_10840	COG0523	cobalamin synthesis protein
LN920_10850	COG4681	YaeQ
LN920_10860	COG0726	polysaccharide deacetylase
LN920_10860	COG1649	PFAM Uncharacterised BCR, COG1649
LN920_10865	COG1215	transferase activity, transferring glycosyl groups
LN920_10875	COG1024	Enoyl-CoA hydratase
LN920_10890	COG1414	Transcriptional regulator
LN920_10910	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_10920	COG0446	pyridine nucleotide-disulphide oxidoreductase
LN920_10925	COG2271	Major facilitator Superfamily
LN920_10935	COG2267	carboxylic ester hydrolase activity
LN920_10940	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_10955	COG0028	Belongs to the TPP enzyme family
LN920_10965	COG0477	Major facilitator Superfamily
LN920_10970	COG0242	peptide deformylase activity
LN920_10975	COG2066	Belongs to the glutaminase family
LN920_10980	COG2207	Transcriptional regulator
LN920_10985	COG2223	nitrite transmembrane transporter activity
LN920_11000	COG0583	DNA-binding transcription factor activity
LN920_11005	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_11010	COG2271	Major facilitator Superfamily
LN920_11015	COG3959	Transketolase, thiamine diphosphate binding domain
LN920_11020	COG3958	Transketolase
LN920_11030	COG0306	phosphate transporter
LN920_11050	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LN920_11095	COG4181	ATPase activity
LN920_11100	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LN920_11125	COG0583	DNA-binding transcription factor activity
LN920_11135	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LN920_11140	COG1773	rubredoxin
LN920_11190	COG2851	Citrate transporter
LN920_11195	COG1253	flavin adenine dinucleotide binding
LN920_11245	COG0830	nickel cation binding
LN920_11260	COG0742	ribosomal rna small subunit methyltransferase
LN920_11265	COG0768	penicillin binding
LN920_11290	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LN920_11295	COG2878	Part of a membrane complex involved in electron transport
LN920_11300	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LN920_11310	COG3384	dioxygenase
LN920_11340	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LN920_11515	COG2826	transposase and inactivated derivatives, IS30 family
LN920_11680	COG0739	heme binding
LN920_11725	COG2194	sulfuric ester hydrolase activity
LN920_11765	COG0006	proline dipeptidase activity
LN920_11770	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LN920_11775	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LN920_11795	COG1279	arginine transmembrane transporter activity
LN920_11800	COG0583	DNA-binding transcription factor activity
LN920_11840	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LN920_11845	COG1388	LysM domain
LN920_11845	COG1388	LysM domain
LN920_11845	COG0741	lytic transglycosylase activity
LN920_11845	COG0741	lytic transglycosylase activity
LN920_11855	COG4174	ABC transporter (Permease)
LN920_11860	COG4239	(ABC) transporter, permease
LN920_11865	COG4172	Belongs to the ABC transporter superfamily
LN920_11885	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LN920_11895	COG2203	Gaf domain
LN920_11895	COG3706	GGDEF domain
LN920_11895	COG4251	negative regulation of phosphorylation
LN920_11895	COG5001	Diguanylate cyclase
LN920_11905	COG0446	pyridine nucleotide-disulphide oxidoreductase
LN920_11905	COG1902	pentaerythritol trinitrate reductase activity
LN920_11935	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LN920_12030	COG0300	oxidoreductase activity
LN920_12040	COG1309	transcriptional regulator
LN920_12045	COG1741	Belongs to the pirin family
LN920_12060	COG2072	flavoprotein involved in K transport
LN920_12070	COG2252	PERMEase
LN920_12075	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LN920_12080	COG3038	cytochrome b561
LN920_12090	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LN920_12100	COG0527	aspartate kinase activity
LN920_12110	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LN920_12120	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LN920_12135	COG0667	Aldo Keto reductase
LN920_12155	COG1765	OsmC-like protein
LN920_12170	COG0542	response to heat
LN920_12205	COG2885	chlorophyll binding
LN920_12215	COG0625	glutathione transferase activity
LN920_12220	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LN920_12240	COG3634	alkyl hydroperoxide reductase activity
LN920_12250	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LN920_12260	COG0450	alkyl hydroperoxide reductase
LN920_12265	COG1643	Atp-dependent helicase
LN920_12280	COG2814	Major facilitator Superfamily
LN920_12285	COG3135	benzoate transporter
LN920_12290	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_12295	COG0543	2 iron, 2 sulfur cluster binding
LN920_12295	COG0633	Ferredoxin
LN920_12300	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LN920_12305	COG4638	Rieske (2fe-2S)
LN920_12315	COG0583	DNA-binding transcription factor activity
LN920_12365	COG1570	exodeoxyribonuclease VII activity
LN920_12395	COG1280	lysine exporter protein (LysE YggA)
LN920_12400	COG1278	Cold shock
LN920_12435	COG2814	Major facilitator Superfamily
LN920_12470	COG0517	IMP dehydrogenase activity
LN920_12470	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LN920_12475	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LN920_12485	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LN920_12490	COG1137	ATPase activity
LN920_12495	COG1538	Outer membrane efflux protein
LN920_12525	COG4122	O-methyltransferase activity
LN920_12535	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
LN920_12550	COG1522	sequence-specific DNA binding
LN920_12555	COG5006	permease, DMT superfamily
LN920_12565	COG1560	Kdo2-lipid A biosynthetic process
LN920_12580	COG2814	Major facilitator Superfamily
LN920_12600	COG1250	3-hydroxyacyl-CoA dehydrogenase
LN920_12650	COG0583	DNA-binding transcription factor activity
LN920_12655	COG1914	H( )-stimulated, divalent metal cation uptake system
LN920_12675	COG4770	biotin carboxylase activity
LN920_12680	COG0038	chloride channel
LN920_12700	COG1309	transcriptional regulator
LN920_12710	COG1063	alcohol dehydrogenase
LN920_12725	COG0439	Biotin carboxylase
LN920_12730	COG2249	NAD(P)H dehydrogenase (quinone) activity
LN920_12750	COG0864	Transcriptional regulator
LN920_12760	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LN920_12765	COG1116	anion transmembrane transporter activity
LN920_12895	COG0590	tRNA wobble adenosine to inosine editing
LN920_12900	COG2807	transmembrane transport
LN920_12915	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LN920_12930	COG0789	Transcriptional regulator
LN920_12940	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LN920_12960	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LN920_12970	COG0446	pyridine nucleotide-disulphide oxidoreductase
LN920_12985	COG1012	belongs to the aldehyde dehydrogenase family
LN920_12990	COG0531	amino acid
LN920_12995	COG1760	l-serine dehydratase
LN920_13000	COG1012	belongs to the aldehyde dehydrogenase family
LN920_13000	COG2030	dehydratase
LN920_13005	COG3396	Phenylacetate-CoA oxygenase
LN920_13010	COG3460	Phenylacetate-CoA oxygenase
LN920_13015	COG3396	Phenylacetate-CoA oxygenase
LN920_13020	COG2151	metal-sulfur cluster biosynthetic enzyme
LN920_13025	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LN920_13030	COG1024	Enoyl-CoA hydratase
LN920_13035	COG1024	Enoyl-CoA hydratase
LN920_13040	COG1250	3-hydroxyacyl-CoA dehydrogenase
LN920_13045	COG0183	Belongs to the thiolase family
LN920_13050	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LN920_13055	COG3327	negative regulation of DNA-templated transcription, initiation
LN920_13065	COG2050	protein possibly involved in aromatic compounds catabolism
LN920_13100	COG0753	catalase activity
LN920_13105	COG3038	cytochrome b561
LN920_13125	COG2267	carboxylic ester hydrolase activity
LN920_13130	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LN920_13135	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LN920_13140	COG1012	belongs to the aldehyde dehydrogenase family
LN920_13150	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LN920_13160	COG1012	belongs to the aldehyde dehydrogenase family
LN920_13165	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LN920_13170	COG0583	DNA-binding transcription factor activity
LN920_13180	COG1414	Transcriptional regulator
LN920_13185	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LN920_13195	COG1840	ABC-type Fe3 transport system, periplasmic component
LN920_13200	COG3842	ATPase activity
LN920_13215	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LN920_13220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LN920_13225	COG2814	Major facilitator Superfamily
LN920_13230	COG1960	acyl-CoA dehydrogenase activity
LN920_13245	COG1024	Enoyl-CoA hydratase
LN920_13255	COG2814	Major facilitator Superfamily
LN920_13265	COG0183	Belongs to the thiolase family
LN920_13270	COG1250	3-hydroxyacyl-CoA dehydrogenase
LN920_13275	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_13280	COG1024	Enoyl-CoA hydratase
LN920_13285	COG1960	acyl-CoA dehydrogenase activity
LN920_13290	COG2814	Major facilitator Superfamily
LN920_13295	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LN920_13300	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LN920_13310	COG2814	Major facilitator Superfamily
LN920_13320	COG1960	acyl-CoA dehydrogenase activity
LN920_13335	COG0583	DNA-binding transcription factor activity
LN920_13345	COG4770	biotin carboxylase activity
LN920_13350	COG1024	Enoyl-CoA hydratase
LN920_13355	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LN920_13360	COG1960	acyl-CoA dehydrogenase activity
LN920_13365	COG1309	transcriptional regulator
LN920_13370	COG0318	PFAM AMP-dependent synthetase and ligase
LN920_13390	COG0583	DNA-binding transcription factor activity
LN920_13440	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_13460	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LN920_13480	COG0784	Response regulator, receiver
LN920_13480	COG2205	protein histidine kinase activity
LN920_13500	COG0765	amino acid transport
LN920_13505	COG0765	amino acid transport
LN920_13510	COG1126	abc transporter atp-binding protein
LN920_13515	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LN920_13520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LN920_13535	COG1280	lysine exporter protein (LysE YggA)
LN920_13545	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LN920_13550	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LN920_13555	COG1045	serine acetyltransferase
LN920_13570	COG0583	DNA-binding transcription factor activity
LN920_13575	COG0625	glutathione transferase activity
LN920_13580	COG0625	glutathione transferase activity
LN920_13585	COG0583	DNA-binding transcription factor activity
LN920_13595	COG1346	cytolysis
LN920_13615	COG2814	Major facilitator Superfamily
LN920_13625	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
LN920_13630	COG3052	prosthetic group binding
LN920_13650	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LN920_13670	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LN920_13680	COG1294	oxidase, subunit
LN920_13685	COG1271	oxidase subunit
LN920_13705	COG0477	Major facilitator Superfamily
LN920_13715	COG4521	taurine ABC transporter
LN920_13720	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
LN920_13725	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LN920_13730	COG2175	clavaminate synthase activity
LN920_13740	COG1953	Uracil, thiamine, allantoin
LN920_13750	COG0583	DNA-binding transcription factor activity
LN920_13760	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LN920_13775	COG0640	Transcriptional regulator
LN920_13780	COG0798	PFAM Bile acid sodium symporter
LN920_13785	COG0583	DNA-binding transcription factor activity
LN920_13800	COG3634	alkyl hydroperoxide reductase activity
LN920_13840	COG0436	Aminotransferase
LN920_13850	COG0386	Belongs to the glutathione peroxidase family
LN920_13890	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LN920_13915	COG0012	GTP binding
LN920_13920	COG2011	ABC-type metal ion transport system permease component
LN920_13925	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LN920_13935	COG1464	Belongs to the NlpA lipoprotein family
LN920_13965	COG0765	amino acid transport
LN920_13970	COG0765	amino acid transport
LN920_13975	COG1126	abc transporter atp-binding protein
LN920_13985	COG1522	sequence-specific DNA binding
LN920_14000	COG1309	transcriptional regulator
LN920_14020	COG0583	DNA-binding transcription factor activity
LN920_14030	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LN920_14040	COG0697	spore germination
LN920_14065	COG3121	Chaperone
LN920_14070	COG3539	Fimbrial protein
LN920_14095	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LN920_14095	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LN920_14145	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LN920_14155	COG2353	YceI-like domain
LN920_14190	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LN920_14195	COG0506	proline dehydrogenase activity
LN920_14195	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LN920_14195	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LN920_14205	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LN920_14210	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LN920_14230	COG1132	(ABC) transporter
LN920_14235	COG3122	Protein conserved in bacteria
LN920_14240	COG3619	membrane
LN920_14250	COG0640	Transcriptional regulator
LN920_14260	COG2850	peptidyl-arginine hydroxylation
LN920_14265	COG0424	maF-like protein
LN920_14285	COG0191	fructose-bisphosphate aldolase activity
LN920_14305	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LN920_14315	COG1192	Involved in chromosome partitioning
LN920_14320	COG1475	DNA binding
LN920_14325	COG0811	peptide transport
LN920_14335	COG1132	(ABC) transporter
LN920_14340	COG1663	tetraacyldisaccharide 4'-kinase activity
LN920_14360	COG0084	hydrolase, TatD family'
LN920_14425	COG0776	regulation of translation
LN920_14455	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LN920_14460	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LN920_14510	COG0339	signal peptide processing
LN920_14520	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LN920_14560	COG0702	epimerase
LN920_14565	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LN920_14585	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LN920_14615	COG0316	Belongs to the HesB IscA family
LN920_14620	COG0822	iron-sulfur transferase activity
LN920_14645	COG0776	regulation of translation
LN920_14650	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LN920_14655	COG2207	Transcriptional regulator
LN920_14660	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LN920_14665	COG1960	acyl-CoA dehydrogenase activity
LN920_14670	COG1960	acyl-CoA dehydrogenase activity
LN920_14685	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LN920_14705	COG4264	IucA IucC family
LN920_14710	COG4264	IucA IucC family
LN920_14750	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LN920_14765	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LN920_14785	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LN920_14790	COG0730	response to heat
LN920_14810	COG4773	Receptor
LN920_14815	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LN920_14830	COG1131	(ABC) transporter
LN920_14835	COG0842	Transport permease protein
LN920_14840	COG0842	Transport permease protein
LN920_14895	COG2226	methyltransferase
LN920_14920	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LN920_14955	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LN920_14965	COG0133	tryptophan synthase activity
LN920_14980	COG3706	GGDEF domain
LN920_15000	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LN920_15005	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LN920_15010	COG0022	dehydrogenase e1 component
LN920_15015	COG0508	dehydrogenase complex catalyzes the overall conversion of
LN920_15020	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LN920_15030	COG1063	alcohol dehydrogenase
LN920_15035	COG3781	membrane
LN920_15045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LN920_15045	COG3453	Protein conserved in bacteria
LN920_15060	COG0730	response to heat
LN920_15075	COG3708	Transcriptional regulator
LN920_15075	COG2207	Transcriptional regulator
LN920_15080	COG1733	regulation of RNA biosynthetic process
LN920_15085	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LN920_15095	COG2188	Transcriptional regulator
LN920_15110	COG4521	taurine ABC transporter
LN920_15115	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LN920_15135	COG0477	Major facilitator Superfamily
LN920_15145	COG1027	Aspartate ammonia-lyase
LN920_15160	COG0583	DNA-binding transcription factor activity
LN920_15165	COG0583	DNA-binding transcription factor activity
LN920_15170	COG0183	Belongs to the thiolase family
LN920_15175	COG2031	fatty acid transporter
LN920_15180	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LN920_15190	COG0583	DNA-binding transcription factor activity
LN920_15200	COG2610	gluconate transmembrane transporter activity
LN920_15205	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_15215	COG2207	Transcriptional regulator
LN920_15230	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_15255	COG0543	2 iron, 2 sulfur cluster binding
LN920_15255	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LN920_15260	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LN920_15265	COG4638	Rieske (2fe-2S)
LN920_15275	COG0725	ABC transporter, periplasmic molybdate-binding protein
LN920_15280	COG4149	molybdate abc transporter
LN920_15285	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LN920_15290	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_15295	COG1535	isochorismatase
LN920_15295	COG3433	isochorismatase activity
LN920_15355	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LN920_15370	COG0753	catalase activity
LN920_15380	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
LN920_15410	COG3539	Fimbrial protein
LN920_15430	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LN920_15450	COG2072	flavoprotein involved in K transport
LN920_15460	COG1538	Outer membrane efflux protein
LN920_15465	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LN920_15470	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LN920_15475	COG0745	RESPONSE REGULATOR receiver
LN920_15480	COG2205	protein histidine kinase activity
LN920_15490	COG2207	Transcriptional regulator
LN920_15505	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_15555	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LN920_15675	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LN920_15705	COG1120	ATPase activity
LN920_15710	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LN920_15720	COG1064	alcohol dehydrogenase
LN920_15735	COG2207	Transcriptional regulator
LN920_15740	COG2084	Dehydrogenase
LN920_15750	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LN920_15755	COG0583	DNA-binding transcription factor activity
LN920_15765	COG0129	dihydroxy-acid dehydratase activity
LN920_15770	COG1012	belongs to the aldehyde dehydrogenase family
LN920_15785	COG1566	PFAM secretion protein HlyD family protein
LN920_15815	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LN920_15845	COG0583	DNA-binding transcription factor activity
LN920_15860	COG2188	Transcriptional regulator
LN920_15890	COG3210	domain, Protein
LN920_15895	COG2831	hemolysin activation secretion protein
LN920_15905	COG1473	amidohydrolase
LN920_15915	COG0475	glutathione-regulated potassium exporter activity
LN920_15915	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LN920_15925	COG0583	DNA-binding transcription factor activity
LN920_15930	COG1335	isochorismatase
LN920_15940	COG1309	transcriptional regulator
LN920_15970	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LN920_15980	COG1902	pentaerythritol trinitrate reductase activity
LN920_15980	COG0446	pyridine nucleotide-disulphide oxidoreductase
LN920_15985	COG1846	Transcriptional regulator
LN920_16005	COG0753	catalase activity
LN920_16020	COG1012	belongs to the aldehyde dehydrogenase family
LN920_16035	COG3162	membrane
LN920_16045	COG3829	transcription factor binding
LN920_16050	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_16055	COG1960	acyl-CoA dehydrogenase activity
LN920_16075	COG1012	belongs to the aldehyde dehydrogenase family
LN920_16095	COG2186	Transcriptional regulator
LN920_16105	COG0583	DNA-binding transcription factor activity
LN920_16110	COG4948	Mandelate Racemase Muconate Lactonizing
LN920_16115	COG4829	muconolactone delta-isomerase
LN920_16125	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LN920_16130	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LN920_16135	COG0183	Belongs to the thiolase family
LN920_16140	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LN920_16150	COG1012	belongs to the aldehyde dehydrogenase family
LN920_16170	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LN920_16180	COG1028	Short-chain dehydrogenase reductase Sdr
LN920_16190	COG4638	Rieske (2fe-2S)
LN920_16210	COG0154	amidase activity
LN920_16220	COG2814	Major facilitator Superfamily
LN920_16245	COG1960	acyl-CoA dehydrogenase activity
LN920_16250	COG0583	DNA-binding transcription factor activity
LN920_16255	COG1414	Transcriptional regulator
LN920_16270	COG2391	methyltransferase activity
LN920_16280	COG4993	Dehydrogenase
LN920_16285	COG3659	wide pore channel activity
LN920_16290	COG3420	alginic acid biosynthetic process
LN920_16295	COG0710	3-dehydroquinate dehydratase activity
LN920_16300	COG3485	protocatechuate 3,4-dioxygenase
LN920_16305	COG3485	protocatechuate 3,4-dioxygenase
LN920_16310	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LN920_16315	COG2271	Major facilitator Superfamily
LN920_16320	COG0596	Alpha beta hydrolase
LN920_16325	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LN920_16330	COG0183	Belongs to the thiolase family
LN920_16335	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LN920_16340	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LN920_16350	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LN920_16355	COG2323	membrane
LN920_16400	COG0446	pyridine nucleotide-disulphide oxidoreductase
LN920_16400	COG1902	pentaerythritol trinitrate reductase activity
LN920_16425	COG0542	response to heat
LN920_16430	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LN920_16460	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LN920_16465	COG0569	domain protein
LN920_16470	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LN920_16485	COG4774	siderophore transport
LN920_16490	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LN920_16500	COG1585	Membrane protein implicated in regulation of membrane protease activity
LN920_16520	COG1294	oxidase, subunit
LN920_16525	COG4890	Cyd operon protein YbgT
LN920_16540	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
LN920_16550	COG0552	protein localization to endoplasmic reticulum
LN920_16575	COG0517	IMP dehydrogenase activity
LN920_16575	COG0516	GMP reductase activity
LN920_16580	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LN920_16585	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LN920_16595	COG0583	DNA-binding transcription factor activity
LN920_16600	COG0024	Methionine aminopeptidase
LN920_16630	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LN920_16630	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LN920_16635	COG1105	Belongs to the carbohydrate kinase PfkB family
LN920_16640	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LN920_16640	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LN920_16640	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LN920_16660	COG5001	Diguanylate cyclase
LN920_16660	COG3300	MHYT domain
LN920_16675	COG2135	peptidase activity
LN920_16680	COG0659	secondary active sulfate transmembrane transporter activity
LN920_16700	COG1113	amino acid transport
LN920_16710	COG1522	sequence-specific DNA binding
LN920_16735	COG1011	Hydrolase
LN920_16740	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LN920_16750	COG2137	regulation of response to DNA damage stimulus
LN920_16765	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LN920_16800	COG0575	Belongs to the CDS family
LN920_16805	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LN920_16825	COG3852	Histidine kinase
LN920_16830	COG2204	response regulator
LN920_16885	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LN920_16890	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LN920_16910	COG0697	spore germination
LN920_16915	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LN920_16925	COG0303	'Molybdopterin
LN920_16930	COG0315	cyclic pyranopterin monophosphate synthase activity
LN920_16930	COG0521	Mo-molybdopterin cofactor biosynthetic process
LN920_16945	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LN920_16950	COG0243	molybdopterin cofactor binding
LN920_16960	COG0243	molybdopterin cofactor binding
LN920_16965	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LN920_16970	COG2146	nitrite reductase [NAD(P)H] activity
LN920_16970	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LN920_16980	COG0745	RESPONSE REGULATOR receiver
LN920_16985	COG1116	anion transmembrane transporter activity
LN920_16985	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LN920_17005	COG0511	ligase activity, forming carbon-carbon bonds
LN920_17020	COG2814	Major facilitator Superfamily
LN920_17350	COG0069	glutamate synthase activity
LN920_17370	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LN920_17380	COG1454	alcohol dehydrogenase
LN920_17385	COG0824	Thioesterase
LN920_17395	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LN920_17410	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LN920_17415	COG2030	dehydratase
LN920_17425	COG0183	Belongs to the thiolase family
LN920_17435	COG0583	DNA-binding transcription factor activity
LN920_17440	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LN920_17450	COG1522	sequence-specific DNA binding
LN920_17455	COG3135	benzoate transporter
LN920_17465	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LN920_17490	COG0589	response to stress
LN920_17495	COG0488	(ABC) transporter
LN920_17515	COG4773	Receptor
LN920_17545	COG0668	transmembrane transport
LN920_17555	COG1309	transcriptional regulator
LN920_17575	COG1605	Chorismate mutase
LN920_17585	COG4221	oxidoreductase activity
LN920_17595	COG0308	aminopeptidase N
LN920_17615	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
LN920_17635	COG1454	alcohol dehydrogenase
LN920_17655	COG0531	amino acid
LN920_17660	COG4303	Ethanolamine ammonia lyase large subunit
LN920_17665	COG4302	ethanolamine ammonia-lyase activity
LN920_17670	COG0519	Catalyzes the synthesis of GMP from XMP
LN920_17670	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LN920_17675	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LN920_17685	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LN920_17700	COG0697	spore germination
LN920_17705	COG1923	regulation of RNA biosynthetic process
LN920_17715	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LN920_17720	COG0802	atpase or kinase
LN920_17740	COG1187	pseudouridine synthase activity
LN920_17755	COG0583	DNA-binding transcription factor activity
LN920_17770	COG2814	Major facilitator Superfamily
LN920_17775	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LN920_17800	COG0729	surface antigen
LN920_17820	COG0174	glutamine synthetase
LN920_17825	COG0745	RESPONSE REGULATOR receiver
LN920_17830	COG2205	protein histidine kinase activity
LN920_17840	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
LN920_17845	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
LN920_17870	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LN920_17875	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LN920_17880	COG1960	acyl-CoA dehydrogenase activity
LN920_17895	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LN920_17900	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LN920_17920	COG0583	DNA-binding transcription factor activity
LN920_17935	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LN920_17945	COG3658	cytochrome
LN920_17950	COG1215	transferase activity, transferring glycosyl groups
LN920_17955	COG1649	PFAM Uncharacterised BCR, COG1649
LN920_17955	COG0726	polysaccharide deacetylase
LN920_17980	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LN920_17985	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LN920_17995	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LN920_18020	COG0305	Participates in initiation and elongation during chromosome replication
LN920_18025	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LN920_18035	COG1305	Transglutaminase-like
LN920_18045	COG2308	Evidence 4 Homologs of previously reported genes of
LN920_18075	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LN920_18080	COG0138	bifunctional purine biosynthesis protein purh
LN920_18085	COG0151	Belongs to the GarS family
LN920_18090	COG1464	Belongs to the NlpA lipoprotein family
LN920_18095	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LN920_18100	COG2011	ABC-type metal ion transport system permease component
LN920_18105	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LN920_18120	COG1301	dicarboxylic acid transport
LN920_18150	COG1794	racemase activity, acting on amino acids and derivatives
LN920_18160	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LN920_18160	COG3008	intermembrane lipid transfer
LN920_18165	COG2995	paraquat-inducible protein a
LN920_18175	COG2985	domain, Protein
LN920_18205	COG0477	Major facilitator Superfamily
LN920_18255	COG2186	Transcriptional regulator
LN920_18265	COG0786	glutamate:sodium symporter activity
LN920_18270	COG3243	poly(R)-hydroxyalkanoic acid synthase
LN920_18305	COG3111	PFAM Bacterial OB fold (BOF) protein
LN920_18405	COG1610	YqeY-like protein
LN920_18410	COG4783	chaperone-mediated protein folding
LN920_18435	COG1286	toxin biosynthetic process
LN920_18465	COG0778	Nitroreductase
LN920_18475	COG0513	Belongs to the DEAD box helicase family
LN920_18500	COG2363	Small membrane protein
LN920_18530	COG1234	tRNA 3'-trailer cleavage
LN920_18535	COG2195	Cleaves the N-terminal amino acid of tripeptides
LN920_18545	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LN920_18555	COG2819	hydrolase of the alpha beta superfamily
LN920_18560	COG1960	acyl-CoA dehydrogenase activity
LN920_18565	COG1301	dicarboxylic acid transport
LN920_18570	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LN920_18575	COG3139	Protein of unknown function (DUF1315)
LN920_18580	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LN920_18585	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LN920_18595	COG0494	nUDIX hydrolase
LN920_18605	COG0642	Histidine kinase
LN920_18620	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LN920_18630	COG1720	tRNA m6t6A37 methyltransferase activity
LN920_18650	COG0826	peptidase U32
LN920_18655	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LN920_18665	COG4598	ABC transporter
LN920_18670	COG4160	amino acid transport
LN920_18675	COG4215	(ABC) transporter
LN920_18690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LN920_18735	COG1131	(ABC) transporter
LN920_18740	COG0842	Transport permease protein
LN920_18755	COG0772	Belongs to the SEDS family
LN920_18760	COG2951	lytic endotransglycosylase activity
LN920_18785	COG2207	Transcriptional regulator
LN920_18800	COG0052	Belongs to the universal ribosomal protein uS2 family
LN920_18805	COG0024	Methionine aminopeptidase
LN920_18815	COG2223	nitrite transmembrane transporter activity
LN920_18825	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LN920_18830	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LN920_18835	COG1960	acyl-CoA dehydrogenase activity
LN920_18850	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
LN920_18855	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LN920_18860	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LN920_18880	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LN920_18885	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LN920_18890	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LN920_18925	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LN920_18935	COG0174	glutamine synthetase
LN920_18950	COG0582	viral genome integration into host DNA