locus-tag class description BS065_00005 PF00308 Bacterial dnaA protein BS065_00005 PF08299 Bacterial dnaA protein helix-turn-helix BS065_00005 PF11638 DnaA N-terminal domain BS065_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain BS065_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain BS065_00010 PF02767 DNA polymerase III beta subunit, central domain BS065_00015 PF02463 RecF/RecN/SMC N terminal domain BS065_00020 PF01751 Toprim domain BS065_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_00020 PF00204 DNA gyrase B BS065_00020 PF18053 DNA gyrase B subunit insert domain BS065_00020 PF00986 DNA gyrase B subunit, carboxyl terminus BS065_00030 PF09335 SNARE associated Golgi protein BS065_00035 PF12848 ABC transporter BS065_00035 PF00005 ABC transporter BS065_00055 PF01521 Iron-sulphur cluster biosynthesis BS065_00060 PF00561 alpha/beta hydrolase fold BS065_00065 PF03702 Anhydro-N-acetylmuramic acid kinase BS065_00070 PF00579 tRNA synthetases class I (W and Y) BS065_00110 PF00209 Sodium:neurotransmitter symporter family BS065_00120 PF01189 16S rRNA methyltransferase RsmB/F BS065_00120 PF01029 NusB family BS065_00125 PF02911 Formyl transferase, C-terminal domain BS065_00125 PF00551 Formyl transferase BS065_00130 PF00920 Dehydratase family BS065_00145 PF03466 LysR substrate binding domain BS065_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_00150 PF00860 Permease family BS065_00155 PF00311 Phosphoenolpyruvate carboxylase BS065_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region BS065_00160 PF00440 Bacterial regulatory proteins, tetR family BS065_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_00170 PF00873 AcrB/AcrD/AcrF family BS065_00180 PF01556 DnaJ C terminal domain BS065_00180 PF00684 DnaJ central domain BS065_00180 PF00226 DnaJ domain BS065_00190 PF05173 Dihydrodipicolinate reductase, C-terminus BS065_00190 PF01113 Dihydrodipicolinate reductase, N-terminus BS065_00200 PF07690 Major Facilitator Superfamily BS065_00205 PF00248 Aldo/keto reductase family BS065_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_00210 PF03466 LysR substrate binding domain BS065_00220 PF00392 Bacterial regulatory proteins, gntR family BS065_00220 PF00155 Aminotransferase class I and II BS065_00225 PF08240 Alcohol dehydrogenase GroES-like domain BS065_00225 PF00107 Zinc-binding dehydrogenase BS065_00230 PF03352 Methyladenine glycosylase BS065_00245 PF00730 HhH-GPD superfamily base excision DNA repair protein BS065_00245 PF00633 Helix-hairpin-helix motif BS065_00245 PF10576 Iron-sulfur binding domain of endonuclease III BS065_00245 PF14815 NUDIX domain BS065_00260 PF07043 Protein of unknown function (DUF1328) BS065_00265 PF03692 Putative zinc- or iron-chelating domain BS065_00270 PF07995 Glucose / Sorbosone dehydrogenase BS065_00275 PF12002 MgsA AAA+ ATPase C terminal BS065_00275 PF16193 AAA C-terminal domain BS065_00275 PF00004 ATPase family associated with various cellular activities (AAA) BS065_00280 PF01226 Formate/nitrite transporter BS065_00290 PF01259 SAICAR synthetase BS065_00300 PF00701 Dihydrodipicolinate synthetase family BS065_00305 PF00857 Isochorismatase family BS065_00310 PF01758 Sodium Bile acid symporter family BS065_00315 PF01554 MatE BS065_00320 PF04463 Protein of unknown function (DUF523) BS065_00325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BS065_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BS065_00340 PF02798 Glutathione S-transferase, N-terminal domain BS065_00340 PF14497 Glutathione S-transferase, C-terminal domain BS065_00360 PF00905 Penicillin binding protein transpeptidase domain BS065_00380 PF00324 Amino acid permease BS065_00390 PF07683 Cobalamin synthesis protein cobW C-terminal domain BS065_00390 PF02492 CobW/HypB/UreG, nucleotide-binding domain BS065_00400 PF07702 UTRA domain BS065_00400 PF00392 Bacterial regulatory proteins, gntR family BS065_00405 PF05962 HutD BS065_00410 PF17392 Urocanase C-terminal domain BS065_00410 PF01175 Urocanase Rossmann-like domain BS065_00410 PF17391 Urocanase N-terminal domain BS065_00415 PF00221 Aromatic amino acid lyase BS065_00420 PF00324 Amino acid permease BS065_00425 PF01979 Amidohydrolase family BS065_00430 PF00491 Arginase family BS065_00445 PF01177 Asp/Glu/Hydantoin racemase BS065_00450 PF01380 SIS domain BS065_00455 PF12804 MobA-like NTP transferase domain BS065_00455 PF14602 Hexapeptide repeat of succinyl-transferase BS065_00455 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_00460 PF04608 Phosphatidylglycerophosphatase A BS065_00465 PF02769 AIR synthase related protein, C-terminal domain BS065_00465 PF00586 AIR synthase related protein, N-terminal domain BS065_00470 PF01029 NusB family BS065_00475 PF00885 6,7-dimethyl-8-ribityllumazine synthase BS065_00480 PF00925 GTP cyclohydrolase II BS065_00480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BS065_00510 PF02580 D-Tyr-tRNA(Tyr) deacylase BS065_00515 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BS065_00515 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BS065_00520 PF00581 Rhodanese-like domain BS065_00525 PF02666 Phosphatidylserine decarboxylase BS065_00530 PF03069 Acetamidase/Formamidase family BS065_00550 PF00512 His Kinase A (phospho-acceptor) domain BS065_00550 PF00989 PAS fold BS065_00550 PF11808 Phosphate regulon sensor protein PhoR BS065_00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_00555 PF00486 Transcriptional regulatory protein, C terminal BS065_00555 PF00072 Response regulator receiver domain BS065_00565 PF00106 short chain dehydrogenase BS065_00570 PF01554 MatE BS065_00575 PF00155 Aminotransferase class I and II BS065_00580 PF04286 Protein of unknown function (DUF445) BS065_00595 PF04262 Glutamate-cysteine ligase BS065_00600 PF02600 Disulfide bond formation protein DsbB BS065_00605 PF04717 Type VI secretion system, phage-baseplate injector BS065_00610 PF01476 LysM domain BS065_00610 PF00877 NlpC/P60 family BS065_00635 PF05728 Uncharacterised protein family (UPF0227) BS065_00640 PF00986 DNA gyrase B subunit, carboxyl terminus BS065_00640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_00640 PF00204 DNA gyrase B BS065_00640 PF01751 Toprim domain BS065_00645 PF00106 short chain dehydrogenase BS065_00650 PF04115 Ureidoglycolate lyase BS065_00655 PF03561 Allantoicase repeat BS065_00660 PF01494 FAD binding domain BS065_00670 PF00860 Permease family BS065_00675 PF00576 HIUase/Transthyretin family BS065_00705 PF02683 Cytochrome C biogenesis protein transmembrane region BS065_00705 PF11412 Disulphide bond corrector protein DsbC BS065_00710 PF07694 5TMR of 5TMR-LYT BS065_00710 PF00990 Diguanylate cyclase, GGDEF domain BS065_00715 PF07859 alpha/beta hydrolase fold BS065_00725 PF03960 ArsC family BS065_00730 PF03372 Endonuclease/Exonuclease/phosphatase family BS065_00735 PF00156 Phosphoribosyl transferase domain BS065_00740 PF07715 TonB-dependent Receptor Plug Domain BS065_00740 PF00593 TonB dependent receptor BS065_00750 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BS065_00750 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BS065_00760 PF02875 Mur ligase family, glutamate ligase domain BS065_00760 PF01225 Mur ligase family, catalytic domain BS065_00760 PF08245 Mur ligase middle domain BS065_00765 PF01820 D-ala D-ala ligase N-terminus BS065_00765 PF07478 D-ala D-ala ligase C-terminus BS065_00770 PF08478 POTRA domain, FtsQ-type BS065_00770 PF03799 Cell division protein FtsQ BS065_00775 PF02491 SHS2 domain inserted in FTSA BS065_00780 PF12327 FtsZ family, C-terminal domain BS065_00780 PF00091 Tubulin/FtsZ family, GTPase domain BS065_00785 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BS065_00795 PF01551 Peptidase family M23 BS065_00800 PF17831 Pyruvate dehydrogenase E1 component middle domain BS065_00800 PF00456 Transketolase, thiamine diphosphate binding domain BS065_00805 PF00364 Biotin-requiring enzyme BS065_00805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BS065_00805 PF02817 e3 binding domain BS065_00815 PF01169 Uncharacterized protein family UPF0016 BS065_00840 PF01613 Flavin reductase like domain BS065_00840 PF00258 Flavodoxin BS065_00845 PF03692 Putative zinc- or iron-chelating domain BS065_00850 PF00571 CBS domain BS065_00850 PF00478 IMP dehydrogenase / GMP reductase domain BS065_00855 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BS065_00855 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BS065_00855 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BS065_00855 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BS065_00860 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BS065_00860 PF01243 Pyridoxamine 5'-phosphate oxidase BS065_00865 PF02272 DHHA1 domain BS065_00865 PF17768 RecJ OB domain BS065_00865 PF01368 DHH family BS065_00875 PF03462 PCRF domain BS065_00875 PF00472 RF-1 domain BS065_00885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_00890 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BS065_00895 PF04452 RNA methyltransferase BS065_00900 PF00924 Mechanosensitive ion channel BS065_00910 PF00501 AMP-binding enzyme BS065_00910 PF13193 AMP-binding enzyme C-terminal domain BS065_00910 PF16177 Acetyl-coenzyme A synthetase N-terminus BS065_00915 PF00857 Isochorismatase family BS065_00920 PF01037 Lrp/AsnC ligand binding domain BS065_00925 PF00872 Transposase, Mutator family BS065_00930 PF00296 Luciferase-like monooxygenase BS065_00935 PF03358 NADPH-dependent FMN reductase BS065_00940 PF00072 Response regulator receiver domain BS065_00940 PF00196 Bacterial regulatory proteins, luxR family BS065_00950 PF00072 Response regulator receiver domain BS065_00950 PF00672 HAMP domain BS065_00950 PF01627 Hpt domain BS065_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_00950 PF00512 His Kinase A (phospho-acceptor) domain BS065_00955 PF04341 Protein of unknown function, DUF485 BS065_00960 PF00474 Sodium:solute symporter family BS065_00970 PF02028 BCCT, betaine/carnitine/choline family transporter BS065_00980 PF00990 Diguanylate cyclase, GGDEF domain BS065_00980 PF17158 Membrane-associated sensor, integral membrane domain BS065_00990 PF17755 UvrA DNA-binding domain BS065_00990 PF00005 ABC transporter BS065_00990 PF17760 UvrA interaction domain BS065_00995 PF00440 Bacterial regulatory proteins, tetR family BS065_00995 PF16925 Tetracyclin repressor-like, C-terminal domain BS065_01000 PF08240 Alcohol dehydrogenase GroES-like domain BS065_01000 PF00107 Zinc-binding dehydrogenase BS065_01010 PF06942 GlpM protein BS065_01015 PF08543 Phosphomethylpyrimidine kinase BS065_01015 PF03070 TENA/THI-4/PQQC family BS065_01015 PF02581 Thiamine monophosphate synthase BS065_01025 PF07690 Major Facilitator Superfamily BS065_01030 PF00436 Single-strand binding protein family BS065_01040 PF03591 AzlC protein BS065_01050 PF00324 Amino acid permease BS065_01055 PF00155 Aminotransferase class I and II BS065_01055 PF00392 Bacterial regulatory proteins, gntR family BS065_01060 PF00202 Aminotransferase class-III BS065_01065 PF00171 Aldehyde dehydrogenase family BS065_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_01075 PF00857 Isochorismatase family BS065_01080 PF02678 Pirin BS065_01080 PF05726 Pirin C-terminal cupin domain BS065_01085 PF01593 Flavin containing amine oxidoreductase BS065_01105 PF07690 Major Facilitator Superfamily BS065_01110 PF03466 LysR substrate binding domain BS065_01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_01130 PF00248 Aldo/keto reductase family BS065_01135 PF02311 AraC-like ligand binding domain BS065_01135 PF12833 Helix-turn-helix domain BS065_01165 PF01638 HxlR-like helix-turn-helix BS065_01170 PF02525 Flavodoxin-like fold BS065_01190 PF02705 K+ potassium transporter BS065_01215 PF00230 Major intrinsic protein BS065_01230 PF00977 Histidine biosynthesis protein BS065_01235 PF01636 Phosphotransferase enzyme family BS065_01250 PF03992 Antibiotic biosynthesis monooxygenase BS065_01265 PF00977 Histidine biosynthesis protein BS065_01280 PF00117 Glutamine amidotransferase class-I BS065_01285 PF00475 Imidazoleglycerol-phosphate dehydratase BS065_01305 PF00583 Acetyltransferase (GNAT) family BS065_01310 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BS065_01310 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BS065_01315 PF00672 HAMP domain BS065_01315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_01315 PF00512 His Kinase A (phospho-acceptor) domain BS065_01320 PF00486 Transcriptional regulatory protein, C terminal BS065_01320 PF00072 Response regulator receiver domain BS065_01325 PF00575 S1 RNA binding domain BS065_01325 PF16921 Tex protein YqgF-like domain BS065_01325 PF17674 HHH domain BS065_01325 PF09371 Tex-like protein N-terminal domain BS065_01330 PF00916 Sulfate permease family BS065_01330 PF01740 STAS domain BS065_01335 PF00106 short chain dehydrogenase BS065_01340 PF01053 Cys/Met metabolism PLP-dependent enzyme BS065_01345 PF00005 ABC transporter BS065_01345 PF12848 ABC transporter BS065_01370 PF04191 Phospholipid methyltransferase BS065_01385 PF00529 HlyD membrane-fusion protein of T1SS BS065_01385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_01390 PF00873 AcrB/AcrD/AcrF family BS065_01395 PF01545 Cation efflux family BS065_01425 PF00324 Amino acid permease BS065_01440 PF00749 tRNA synthetases class I (E and Q), catalytic domain BS065_01455 PF01795 MraW methylase family BS065_01465 PF03717 Penicillin-binding Protein dimerisation domain BS065_01465 PF00905 Penicillin binding protein transpeptidase domain BS065_01470 PF01225 Mur ligase family, catalytic domain BS065_01470 PF08245 Mur ligase middle domain BS065_01470 PF02875 Mur ligase family, glutamate ligase domain BS065_01475 PF08245 Mur ligase middle domain BS065_01475 PF02875 Mur ligase family, glutamate ligase domain BS065_01475 PF01225 Mur ligase family, catalytic domain BS065_01480 PF00953 Glycosyl transferase family 4 BS065_01490 PF13847 Methyltransferase domain BS065_01495 PF17092 Penicillin-binding protein OB-like domain BS065_01495 PF00912 Transglycosylase BS065_01495 PF00905 Penicillin binding protein transpeptidase domain BS065_01520 PF11741 AMIN domain BS065_01520 PF00263 Bacterial type II and III secretion system protein BS065_01520 PF07660 Secretin and TonB N terminus short domain BS065_01520 PF03958 Bacterial type II/III secretion system short domain BS065_01525 PF01202 Shikimate kinase BS065_01530 PF01761 3-dehydroquinate synthase BS065_01540 PF01493 GXGXG motif BS065_01540 PF04898 Glutamate synthase central domain BS065_01540 PF01645 Conserved region in glutamate synthase BS065_01540 PF00310 Glutamine amidotransferases class-II BS065_01545 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_01545 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BS065_01555 PF04011 LemA family BS065_01560 PF04536 TPM domain BS065_01570 PF00114 Pilin (bacterial filament) BS065_01570 PF07963 Prokaryotic N-terminal methylation motif BS065_01580 PF11846 Virulence factor membrane-bound polymerase, C-terminal BS065_01580 PF15864 Protein glycosylation ligase BS065_01580 PF04932 O-Antigen ligase BS065_01585 PF00210 Ferritin-like domain BS065_01590 PF04324 BFD-like [2Fe-2S] binding domain BS065_01595 PF01042 Endoribonuclease L-PSP BS065_01600 PF13291 ACT domain BS065_01600 PF04607 Region found in RelA / SpoT proteins BS065_01600 PF02824 TGS domain BS065_01605 PF01192 RNA polymerase Rpb6 BS065_01610 PF00625 Guanylate kinase BS065_01615 PF02401 LytB protein BS065_01655 PF00886 Ribosomal protein S16 BS065_01660 PF05239 PRC-barrel domain BS065_01660 PF01782 RimM N-terminal domain BS065_01665 PF01746 tRNA (Guanine-1)-methyltransferase BS065_01670 PF01245 Ribosomal protein L19 BS065_01675 PF00561 alpha/beta hydrolase fold BS065_01680 PF03280 Proteobacterial lipase chaperone protein BS065_01685 PF01509 TruB family pseudouridylate synthase (N terminal domain) BS065_01685 PF16198 tRNA pseudouridylate synthase B C-terminal domain BS065_01685 PF09157 Pseudouridine synthase II TruB, C-terminal BS065_01690 PF01925 Sulfite exporter TauE/SafE BS065_01700 PF00892 EamA-like transporter family BS065_01705 PF00892 EamA-like transporter family BS065_01710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BS065_01710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BS065_01715 PF02913 FAD linked oxidases, C-terminal domain BS065_01715 PF01565 FAD binding domain BS065_01725 PF03992 Antibiotic biosynthesis monooxygenase BS065_01730 PF02525 Flavodoxin-like fold BS065_01740 PF07690 Major Facilitator Superfamily BS065_01745 PF12805 FUSC-like inner membrane protein yccS BS065_01750 PF00080 Copper/zinc superoxide dismutase (SODC) BS065_01755 PF01594 AI-2E family transporter BS065_01760 PF13614 AAA domain BS065_01790 PF00324 Amino acid permease BS065_01795 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BS065_01795 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BS065_01800 PF00202 Aminotransferase class-III BS065_01805 PF04958 Arginine N-succinyltransferase beta subunit BS065_01810 PF00171 Aldehyde dehydrogenase family BS065_01815 PF04996 Succinylarginine dihydrolase BS065_01820 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BS065_01850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_01850 PF03466 LysR substrate binding domain BS065_01855 PF00892 EamA-like transporter family BS065_01865 PF02092 Glycyl-tRNA synthetase beta subunit BS065_01865 PF05746 DALR anticodon binding domain BS065_01870 PF02091 Glycyl-tRNA synthetase alpha subunit BS065_01895 PF00571 CBS domain BS065_01900 PF04024 PspC domain BS065_01910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_01910 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_01910 PF12806 Acetyl-CoA dehydrogenase C-terminal like BS065_01910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_01920 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BS065_01920 PF08501 Shikimate dehydrogenase substrate binding domain BS065_01920 PF01488 Shikimate / quinate 5-dehydrogenase BS065_01925 PF01218 Coproporphyrinogen III oxidase BS065_01930 PF00925 GTP cyclohydrolase II BS065_01935 PF02780 Transketolase, C-terminal domain BS065_01935 PF02779 Transketolase, pyrimidine binding domain BS065_01935 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BS065_01940 PF00459 Inositol monophosphatase family BS065_01945 PF00271 Helicase conserved C-terminal domain BS065_01945 PF12343 Cold shock protein DEAD box A BS065_01945 PF00270 DEAD/DEAH box helicase BS065_01945 PF03880 DbpA RNA binding domain BS065_01955 PF00005 ABC transporter BS065_01960 PF02405 Permease MlaE BS065_01970 PF05494 MlaC protein BS065_01980 PF01544 CorA-like Mg2+ transporter protein BS065_01985 PF03641 Possible lysine decarboxylase BS065_01990 PF00293 NUDIX domain BS065_01995 PF00156 Phosphoribosyl transferase domain BS065_02000 PF00271 Helicase conserved C-terminal domain BS065_02000 PF17191 RecG wedge domain BS065_02000 PF00270 DEAD/DEAH box helicase BS065_02015 PF01553 Acyltransferase BS065_02025 PF00375 Sodium:dicarboxylate symporter family BS065_02035 PF01926 50S ribosome-binding GTPase BS065_02040 PF02082 Transcriptional regulator BS065_02045 PF00970 Oxidoreductase FAD-binding domain BS065_02045 PF00042 Globin BS065_02045 PF00175 Oxidoreductase NAD-binding domain BS065_02050 PF05872 Bacterial protein of unknown function (DUF853) BS065_02055 PF01053 Cys/Met metabolism PLP-dependent enzyme BS065_02060 PF00117 Glutamine amidotransferase class-I BS065_02065 PF00338 Ribosomal protein S10p/S20e BS065_02070 PF00297 Ribosomal protein L3 BS065_02075 PF00573 Ribosomal protein L4/L1 family BS065_02080 PF00276 Ribosomal protein L23 BS065_02085 PF00181 Ribosomal Proteins L2, RNA binding domain BS065_02085 PF03947 Ribosomal Proteins L2, C-terminal domain BS065_02090 PF00203 Ribosomal protein S19 BS065_02095 PF00237 Ribosomal protein L22p/L17e BS065_02100 PF00189 Ribosomal protein S3, C-terminal domain BS065_02100 PF07650 KH domain BS065_02105 PF00252 Ribosomal protein L16p/L10e BS065_02110 PF00831 Ribosomal L29 protein BS065_02115 PF00366 Ribosomal protein S17 BS065_02120 PF00238 Ribosomal protein L14p/L23e BS065_02125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BS065_02125 PF00467 KOW motif BS065_02130 PF00673 ribosomal L5P family C-terminus BS065_02130 PF00281 Ribosomal protein L5 BS065_02135 PF00253 Ribosomal protein S14p/S29e BS065_02140 PF00410 Ribosomal protein S8 BS065_02145 PF00347 Ribosomal protein L6 BS065_02150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BS065_02155 PF03719 Ribosomal protein S5, C-terminal domain BS065_02155 PF00333 Ribosomal protein S5, N-terminal domain BS065_02160 PF00327 Ribosomal protein L30p/L7e BS065_02165 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BS065_02170 PF00344 SecY translocase BS065_02175 PF00444 Ribosomal protein L36 BS065_02180 PF00416 Ribosomal protein S13/S18 BS065_02185 PF00411 Ribosomal protein S11 BS065_02190 PF00163 Ribosomal protein S4/S9 N-terminal domain BS065_02190 PF01479 S4 domain BS065_02195 PF01000 RNA polymerase Rpb3/RpoA insert domain BS065_02195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BS065_02195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BS065_02200 PF01196 Ribosomal protein L17 BS065_02205 PF00743 Flavin-binding monooxygenase-like BS065_02210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_02210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_02210 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_02215 PF03937 Flavinator of succinate dehydrogenase BS065_02245 PF09526 Probable metal-binding protein (DUF2387) BS065_02250 PF01432 Peptidase family M3 BS065_02255 PF00575 S1 RNA binding domain BS065_02255 PF00773 RNB domain BS065_02255 PF08206 Ribonuclease B OB domain BS065_02255 PF08461 Ribonuclease R winged-helix domain BS065_02255 PF17876 Cold shock domain BS065_02300 PF01557 Fumarylacetoacetate (FAA) hydrolase family BS065_02305 PF12833 Helix-turn-helix domain BS065_02310 PF00892 EamA-like transporter family BS065_02315 PF03631 Virulence factor BrkB BS065_02320 PF03358 NADPH-dependent FMN reductase BS065_02345 PF02130 Uncharacterized protein family UPF0054 BS065_02350 PF02562 PhoH-like protein BS065_02355 PF04055 Radical SAM superfamily BS065_02355 PF01938 TRAM domain BS065_02355 PF00919 Uncharacterized protein family UPF0004 BS065_02360 PF01551 Peptidase family M23 BS065_02360 PF10145 Phage-related minor tail protein BS065_02360 PF01464 Transglycosylase SLT domain BS065_02370 PF00056 lactate/malate dehydrogenase, NAD binding domain BS065_02370 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BS065_02390 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BS065_02395 PF01066 CDP-alcohol phosphatidyltransferase BS065_02440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_02440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_02440 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_02445 PF00440 Bacterial regulatory proteins, tetR family BS065_02445 PF17932 Tetracyclin repressor-like, C-terminal domain BS065_02460 PF01039 Carboxyl transferase domain BS065_02465 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_02465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_02465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_02475 PF00289 Biotin carboxylase, N-terminal domain BS065_02475 PF00364 Biotin-requiring enzyme BS065_02475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BS065_02475 PF02785 Biotin carboxylase C-terminal domain BS065_02485 PF04386 Stringent starvation protein B BS065_02490 PF00043 Glutathione S-transferase, C-terminal domain BS065_02490 PF13417 Glutathione S-transferase, N-terminal domain BS065_02495 PF00380 Ribosomal protein S9/S16 BS065_02500 PF00572 Ribosomal protein L13 BS065_02505 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BS065_02510 PF00398 Ribosomal RNA adenine dimethylase BS065_02515 PF00149 Calcineurin-like phosphoesterase BS065_02535 PF16360 GTP-binding GTPase Middle Region BS065_02535 PF13167 GTP-binding GTPase N-terminal BS065_02535 PF01926 50S ribosome-binding GTPase BS065_02545 PF13091 PLD-like domain BS065_02550 PF10518 TAT (twin-arginine translocation) pathway signal sequence BS065_02550 PF00149 Calcineurin-like phosphoesterase BS065_02555 PF00691 OmpA family BS065_02555 PF01389 OmpA-like transmembrane domain BS065_02560 PF00990 Diguanylate cyclase, GGDEF domain BS065_02560 PF17152 Periplasmic sensor domain BS065_02595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BS065_02595 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_02605 PF04273 Putative phosphatase (DUF442) BS065_02605 PF00753 Metallo-beta-lactamase superfamily BS065_02610 PF00561 alpha/beta hydrolase fold BS065_02615 PF00085 Thioredoxin BS065_02620 PF03061 Thioesterase superfamily BS065_02630 PF04461 Protein of unknown function (DUF520) BS065_02640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BS065_02640 PF01266 FAD dependent oxidoreductase BS065_02650 PF03795 YCII-related domain BS065_02655 PF04279 Intracellular septation protein A BS065_02660 PF02811 PHP domain BS065_02665 PF01062 Bestrophin, RFP-TM, chloride channel BS065_02670 PF04002 RadC-like JAB domain BS065_02675 PF02441 Flavoprotein BS065_02675 PF04127 DNA / pantothenate metabolism flavoprotein BS065_02680 PF02355 Protein export membrane protein BS065_02680 PF07549 SecD/SecF GG Motif BS065_02690 PF02699 Preprotein translocase subunit BS065_02695 PF01702 Queuine tRNA-ribosyltransferase BS065_02710 PF02547 Queuosine biosynthesis protein BS065_02755 PF00593 TonB dependent receptor BS065_02755 PF07715 TonB-dependent Receptor Plug Domain BS065_02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_02780 PF00512 His Kinase A (phospho-acceptor) domain BS065_02780 PF07689 KaiB domain BS065_02785 PF03710 Glutamate-ammonia ligase adenylyltransferase BS065_02785 PF08335 GlnD PII-uridylyltransferase BS065_02790 PF01063 Amino-transferase class IV BS065_02805 PF01522 Polysaccharide deacetylase BS065_02810 PF00535 Glycosyl transferase family 2 BS065_02815 PF13439 Glycosyltransferase Family 4 BS065_02815 PF00534 Glycosyl transferases group 1 BS065_02840 PF11380 Stealth protein CR2, conserved region 2 BS065_02840 PF17102 Stealth protein CR3, conserved region 3 BS065_02840 PF17101 Stealth protein CR1, conserved region 1 BS065_02845 PF00152 tRNA synthetases class II (D, K and N) BS065_02845 PF01336 OB-fold nucleic acid binding domain BS065_02845 PF02938 GAD domain BS065_02855 PF00593 TonB dependent receptor BS065_02855 PF07715 TonB-dependent Receptor Plug Domain BS065_02875 PF06146 Phosphate-starvation-inducible E BS065_02880 PF02798 Glutathione S-transferase, N-terminal domain BS065_02880 PF00043 Glutathione S-transferase, C-terminal domain BS065_02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_02885 PF03466 LysR substrate binding domain BS065_02890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_02890 PF12806 Acetyl-CoA dehydrogenase C-terminal like BS065_02890 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_02890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_02895 PF12806 Acetyl-CoA dehydrogenase C-terminal like BS065_02895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_02895 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_02895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_02905 PF00672 HAMP domain BS065_02905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_02905 PF00512 His Kinase A (phospho-acceptor) domain BS065_02910 PF00486 Transcriptional regulatory protein, C terminal BS065_02910 PF00072 Response regulator receiver domain BS065_02915 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BS065_02935 PF01923 Cobalamin adenosyltransferase BS065_02940 PF00593 TonB dependent receptor BS065_02940 PF07715 TonB-dependent Receptor Plug Domain BS065_02945 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BS065_02950 PF00291 Pyridoxal-phosphate dependent enzyme BS065_02975 PF00290 Tryptophan synthase alpha chain BS065_02980 PF01039 Carboxyl transferase domain BS065_02985 PF02875 Mur ligase family, glutamate ligase domain BS065_02985 PF08245 Mur ligase middle domain BS065_03000 PF00753 Metallo-beta-lactamase superfamily BS065_03005 PF10417 C-terminal domain of 1-Cys peroxiredoxin BS065_03005 PF00578 AhpC/TSA family BS065_03010 PF07517 SecA DEAD-like domain BS065_03010 PF01043 SecA preprotein cross-linking domain BS065_03010 PF07516 SecA Wing and Scaffold domain BS065_03010 PF02810 SEC-C motif BS065_03020 PF00083 Sugar (and other) transporter BS065_03020 PF07690 Major Facilitator Superfamily BS065_03025 PF03006 Haemolysin-III related BS065_03050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BS065_03050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BS065_03050 PF00378 Enoyl-CoA hydratase/isomerase BS065_03055 PF00108 Thiolase, N-terminal domain BS065_03055 PF02803 Thiolase, C-terminal domain BS065_03060 PF02311 AraC-like ligand binding domain BS065_03060 PF12833 Helix-turn-helix domain BS065_03065 PF02515 CoA-transferase family III BS065_03070 PF04966 Carbohydrate-selective porin, OprB family BS065_03075 PF01011 PQQ enzyme repeat BS065_03080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BS065_03080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BS065_03100 PF02803 Thiolase, C-terminal domain BS065_03100 PF00108 Thiolase, N-terminal domain BS065_03110 PF13505 Outer membrane protein beta-barrel domain BS065_03110 PF00691 OmpA family BS065_03125 PF01139 tRNA-splicing ligase RtcB BS065_03130 PF00324 Amino acid permease BS065_03135 PF05175 Methyltransferase small domain BS065_03135 PF08468 Methyltransferase small domain N-terminal BS065_03140 PF00860 Permease family BS065_03150 PF01741 Large-conductance mechanosensitive channel, MscL BS065_03165 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BS065_03165 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BS065_03165 PF06827 Zinc finger found in FPG and IleRS BS065_03170 PF02245 Methylpurine-DNA glycosylase (MPG) BS065_03195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_03200 PF03547 Membrane transport protein BS065_03210 PF13098 Thioredoxin-like domain BS065_03210 PF10411 Disulfide bond isomerase protein N-terminus BS065_03215 PF01571 Aminomethyltransferase folate-binding domain BS065_03225 PF04343 Protein of unknown function, DUF488 BS065_03230 PF08274 PhnA Zinc-Ribbon BS065_03230 PF03831 PhnA domain BS065_03235 PF07411 Domain of unknown function (DUF1508) BS065_03240 PF03129 Anticodon binding domain BS065_03240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BS065_03240 PF04073 Aminoacyl-tRNA editing domain BS065_03245 PF00873 AcrB/AcrD/AcrF family BS065_03260 PF00072 Response regulator receiver domain BS065_03265 PF00072 Response regulator receiver domain BS065_03270 PF01584 CheW-like domain BS065_03275 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BS065_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BS065_03280 PF00072 Response regulator receiver domain BS065_03280 PF01627 Hpt domain BS065_03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_03280 PF01584 CheW-like domain BS065_03290 PF07687 Peptidase dimerisation domain BS065_03290 PF01546 Peptidase family M20/M25/M40 BS065_03295 PF08085 Entericidin EcnA/B family BS065_03305 PF04304 Protein of unknown function (DUF454) BS065_03310 PF17969 L,D-transpeptidase C-terminal domain BS065_03310 PF03734 L,D-transpeptidase catalytic domain BS065_03350 PF00175 Oxidoreductase NAD-binding domain BS065_03350 PF00258 Flavodoxin BS065_03350 PF00667 FAD binding domain BS065_03360 PF12805 FUSC-like inner membrane protein yccS BS065_03365 PF07690 Major Facilitator Superfamily BS065_03370 PF00881 Nitroreductase family BS065_03380 PF01235 Sodium:alanine symporter family BS065_03385 PF01734 Patatin-like phospholipase BS065_03390 PF00291 Pyridoxal-phosphate dependent enzyme BS065_03390 PF13291 ACT domain BS065_03395 PF05992 SbmA/BacA-like family BS065_03425 PF02637 GatB domain BS065_03425 PF02934 GatB/GatE catalytic domain BS065_03430 PF01425 Amidase BS065_03435 PF02686 Glu-tRNAGln amidotransferase C subunit BS065_03445 PF04085 rod shape-determining protein MreC BS065_03450 PF04093 rod shape-determining protein MreD BS065_03455 PF02545 Maf-like protein BS065_03460 PF00575 S1 RNA binding domain BS065_03460 PF10150 Ribonuclease E/G family BS065_03470 PF06974 Protein of unknown function (DUF1298) BS065_03470 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain BS065_03475 PF01507 Phosphoadenosine phosphosulfate reductase family BS065_03490 PF02525 Flavodoxin-like fold BS065_03510 PF02673 Bacitracin resistance protein BacA BS065_03515 PF12833 Helix-turn-helix domain BS065_03515 PF06719 AraC-type transcriptional regulator N-terminus BS065_03520 PF00550 Phosphopantetheine attachment site BS065_03520 PF09277 Erythronolide synthase, docking BS065_03520 PF08990 Erythronolide synthase docking BS065_03520 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_03520 PF14765 Polyketide synthase dehydratase BS065_03520 PF16197 Ketoacyl-synthetase C-terminal extension BS065_03520 PF00698 Acyl transferase domain BS065_03520 PF08240 Alcohol dehydrogenase GroES-like domain BS065_03520 PF08659 KR domain BS065_03520 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_03525 PF01965 DJ-1/PfpI family BS065_03535 PF00324 Amino acid permease BS065_03540 PF04303 PrpF protein BS065_03545 PF00348 Polyprenyl synthetase BS065_03550 PF04237 YjbR BS065_03555 PF01145 SPFH domain / Band 7 family BS065_03565 PF01734 Patatin-like phospholipase BS065_03585 PF08019 Phosphoethanolamine transferase EptA/EptB BS065_03585 PF00884 Sulfatase BS065_03590 PF00072 Response regulator receiver domain BS065_03590 PF00486 Transcriptional regulatory protein, C terminal BS065_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_03595 PF00512 His Kinase A (phospho-acceptor) domain BS065_03595 PF08521 Two-component sensor kinase N-terminal BS065_03605 PF00909 Ammonium Transporter Family BS065_03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_03615 PF03466 LysR substrate binding domain BS065_03635 PF00133 tRNA synthetases class I (I, L, M and V) BS065_03635 PF08264 Anticodon-binding domain of tRNA BS065_03635 PF10458 Valyl tRNA synthetase tRNA binding arm BS065_03655 PF01906 Putative heavy-metal-binding BS065_03660 PF01906 Putative heavy-metal-binding BS065_03665 PF02321 Outer membrane efflux protein BS065_03670 PF00873 AcrB/AcrD/AcrF family BS065_03675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_03675 PF00529 HlyD membrane-fusion protein of T1SS BS065_03680 PF01569 PAP2 superfamily BS065_03690 PF00348 Polyprenyl synthetase BS065_03700 PF00829 Ribosomal prokaryotic L21 protein BS065_03705 PF01016 Ribosomal L27 protein BS065_03710 PF03548 Outer membrane lipoprotein carrier protein LolA BS065_03720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BS065_03720 PF02403 Seryl-tRNA synthetase N-terminal domain BS065_03725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BS065_03725 PF14824 Sirohaem biosynthesis protein central BS065_03725 PF10414 Sirohaem synthase dimerisation region BS065_03730 PF00588 SpoU rRNA Methylase family BS065_03735 PF01638 HxlR-like helix-turn-helix BS065_03740 PF03358 NADPH-dependent FMN reductase BS065_03745 PF13520 Amino acid permease BS065_03750 PF00465 Iron-containing alcohol dehydrogenase BS065_03760 PF03099 Biotin/lipoate A/B protein ligase family BS065_03765 PF04359 Protein of unknown function (DUF493) BS065_03770 PF04539 Sigma-70 region 3 BS065_03770 PF04545 Sigma-70, region 4 BS065_03770 PF00140 Sigma-70 factor, region 1.2 BS065_03770 PF04546 Sigma-70, non-essential region BS065_03770 PF04542 Sigma-70 region 2 BS065_03770 PF03979 Sigma-70 factor, region 1.1 BS065_03800 PF00285 Citrate synthase, C-terminal domain BS065_03815 PF02566 OsmC-like protein BS065_03820 PF00027 Cyclic nucleotide-binding domain BS065_03820 PF13545 Crp-like helix-turn-helix domain BS065_03835 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BS065_03840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BS065_03845 PF02910 Fumarate reductase flavoprotein C-term BS065_03845 PF00890 FAD binding domain BS065_03850 PF13085 2Fe-2S iron-sulfur cluster binding domain BS065_03860 PF16078 2-oxoglutarate dehydrogenase N-terminus BS065_03860 PF02779 Transketolase, pyrimidine binding domain BS065_03860 PF16870 2-oxoglutarate dehydrogenase C-terminal BS065_03860 PF00676 Dehydrogenase E1 component BS065_03865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BS065_03865 PF00364 Biotin-requiring enzyme BS065_03865 PF02817 e3 binding domain BS065_03870 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_03870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BS065_03875 PF00549 CoA-ligase BS065_03875 PF08442 ATP-grasp domain BS065_03880 PF02629 CoA binding domain BS065_03880 PF00549 CoA-ligase BS065_03885 PF00579 tRNA synthetases class I (W and Y) BS065_03890 PF05661 Protein of unknown function (DUF808) BS065_03895 PF04228 Putative neutral zinc metallopeptidase BS065_03930 PF09587 Bacterial capsule synthesis protein PGA_cap BS065_03940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BS065_03945 PF00582 Universal stress protein family BS065_03950 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_03955 PF01272 Transcription elongation factor, GreA/GreB, C-term BS065_03955 PF03449 Transcription elongation factor, N-terminal BS065_03960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BS065_03960 PF02142 MGS-like domain BS065_03960 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BS065_03965 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BS065_03965 PF00117 Glutamine amidotransferase class-I BS065_03985 PF01985 CRS1 / YhbY (CRM) domain BS065_03990 PF01728 FtsJ-like methyltransferase BS065_03995 PF01434 Peptidase family M41 BS065_03995 PF17862 AAA+ lid domain BS065_03995 PF06480 FtsH Extracellular BS065_03995 PF00004 ATPase family associated with various cellular activities (AAA) BS065_04000 PF00809 Pterin binding enzyme BS065_04020 PF09423 PhoD-like phosphatase BS065_04020 PF16655 PhoD-like phosphatase, N-terminal domain BS065_04035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BS065_04035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BS065_04050 PF00083 Sugar (and other) transporter BS065_04055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BS065_04055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BS065_04060 PF01266 FAD dependent oxidoreductase BS065_04060 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BS065_04065 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain BS065_04065 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain BS065_04070 PF00781 Diacylglycerol kinase catalytic domain BS065_04075 PF00149 Calcineurin-like phosphoesterase BS065_04085 PF00166 Chaperonin 10 Kd subunit BS065_04090 PF00118 TCP-1/cpn60 chaperonin family BS065_04095 PF01219 Prokaryotic diacylglycerol kinase BS065_04100 PF00753 Metallo-beta-lactamase superfamily BS065_04105 PF03009 Glycerophosphoryl diester phosphodiesterase family BS065_04120 PF01435 Peptidase family M48 BS065_04125 PF01464 Transglycosylase SLT domain BS065_04135 PF01171 PP-loop family BS065_04145 PF00497 Bacterial extracellular solute-binding proteins, family 3 BS065_04145 PF01464 Transglycosylase SLT domain BS065_04150 PF03449 Transcription elongation factor, N-terminal BS065_04150 PF01272 Transcription elongation factor, GreA/GreB, C-term BS065_04165 PF00668 Condensation domain BS065_04165 PF13193 AMP-binding enzyme C-terminal domain BS065_04165 PF00975 Thioesterase domain BS065_04165 PF00550 Phosphopantetheine attachment site BS065_04165 PF00501 AMP-binding enzyme BS065_04195 PF00881 Nitroreductase family BS065_04210 PF02595 Glycerate kinase family BS065_04215 PF00384 Molybdopterin oxidoreductase BS065_04220 PF02634 FdhD/NarQ family BS065_04225 PF06803 Protein of unknown function (DUF1232) BS065_04230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BS065_04230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BS065_04230 PF11890 Domain of unknown function (DUF3410) BS065_04235 PF00152 tRNA synthetases class II (D, K and N) BS065_04245 PF18073 Rubredoxin metal binding domain BS065_04250 PF00324 Amino acid permease BS065_04260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BS065_04260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BS065_04265 PF01678 Diaminopimelate epimerase BS065_04270 PF01810 LysE type translocator BS065_04275 PF00589 Phage integrase family BS065_04275 PF02899 Phage integrase, N-terminal SAM-like domain BS065_04280 PF01012 Electron transfer flavoprotein domain BS065_04285 PF00766 Electron transfer flavoprotein FAD-binding domain BS065_04285 PF01012 Electron transfer flavoprotein domain BS065_04290 PF03989 DNA gyrase C-terminal domain, beta-propeller BS065_04290 PF00521 DNA gyrase/topoisomerase IV, subunit A BS065_04305 PF00535 Glycosyl transferase family 2 BS065_04325 PF13533 Biotin-lipoyl like BS065_04335 PF00266 Aminotransferase class-V BS065_04345 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BS065_04355 PF12704 MacB-like periplasmic core domain BS065_04355 PF02687 FtsX-like permease family BS065_04360 PF00005 ABC transporter BS065_04365 PF13567 Domain of unknown function (DUF4131) BS065_04365 PF03772 Competence protein BS065_04365 PF00753 Metallo-beta-lactamase superfamily BS065_04375 PF06965 Na+/H+ antiporter 1 BS065_04375 PF01343 Peptidase family S49 BS065_04380 PF12697 Alpha/beta hydrolase family BS065_04385 PF00551 Formyl transferase BS065_04390 PF00586 AIR synthase related protein, N-terminal domain BS065_04390 PF02769 AIR synthase related protein, C-terminal domain BS065_04395 PF01594 AI-2E family transporter BS065_04400 PF00308 Bacterial dnaA protein BS065_04400 PF08299 Bacterial dnaA protein helix-turn-helix BS065_04400 PF11638 DnaA N-terminal domain BS065_04430 PF00588 SpoU rRNA Methylase family BS065_04430 PF08032 RNA 2'-O ribose methyltransferase substrate binding BS065_04435 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BS065_04445 PF00691 OmpA family BS065_04450 PF07676 WD40-like Beta Propeller Repeat BS065_04450 PF04052 TolB amino-terminal domain BS065_04460 PF02472 Biopolymer transport protein ExbD/TolR BS065_04465 PF01618 MotA/TolQ/ExbB proton channel family BS065_04470 PF03061 Thioesterase superfamily BS065_04475 PF07687 Peptidase dimerisation domain BS065_04475 PF01546 Peptidase family M20/M25/M40 BS065_04480 PF17864 RuvB AAA lid domain BS065_04480 PF05491 RuvB C-terminal winged helix domain BS065_04480 PF05496 Holliday junction DNA helicase RuvB P-loop domain BS065_04485 PF07499 RuvA, C-terminal domain BS065_04485 PF01330 RuvA N terminal domain BS065_04490 PF01966 HD domain BS065_04495 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BS065_04495 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BS065_04495 PF02769 AIR synthase related protein, C-terminal domain BS065_04500 PF07690 Major Facilitator Superfamily BS065_04510 PF01784 NIF3 (NGG1p interacting factor 3) BS065_04515 PF00378 Enoyl-CoA hydratase/isomerase BS065_04520 PF01467 Cytidylyltransferase-like BS065_04520 PF00293 NUDIX domain BS065_04530 PF00578 AhpC/TSA family BS065_04545 PF06508 Queuosine biosynthesis protein QueC BS065_04555 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BS065_04555 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_04555 PF14602 Hexapeptide repeat of succinyl-transferase BS065_04565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_04565 PF03466 LysR substrate binding domain BS065_04570 PF12857 TOBE-like domain BS065_04570 PF00005 ABC transporter BS065_04575 PF00528 Binding-protein-dependent transport system inner membrane component BS065_04580 PF00528 Binding-protein-dependent transport system inner membrane component BS065_04595 PF01063 Amino-transferase class IV BS065_04600 PF02618 YceG-like family BS065_04605 PF02223 Thymidylate kinase BS065_04615 PF00890 FAD binding domain BS065_04615 PF02910 Fumarate reductase flavoprotein C-term BS065_04620 PF13180 PDZ domain BS065_04630 PF03144 Elongation factor Tu domain 2 BS065_04630 PF06421 GTP-binding protein LepA C-terminus BS065_04630 PF00009 Elongation factor Tu GTP binding domain BS065_04630 PF00679 Elongation factor G C-terminus BS065_04635 PF10502 Signal peptidase, peptidase S26 BS065_04645 PF00035 Double-stranded RNA binding motif BS065_04645 PF14622 Ribonuclease-III-like BS065_04650 PF01926 50S ribosome-binding GTPase BS065_04650 PF07650 KH domain BS065_04660 PF11967 Recombination protein O N terminal BS065_04660 PF02565 Recombination protein O C terminal BS065_04665 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BS065_04670 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BS065_04675 PF00106 short chain dehydrogenase BS065_04710 PF00990 Diguanylate cyclase, GGDEF domain BS065_04710 PF17151 Periplasmic sensor domain BS065_04720 PF02151 UvrB/uvrC motif BS065_04720 PF12344 Ultra-violet resistance protein B BS065_04720 PF00271 Helicase conserved C-terminal domain BS065_04720 PF17757 UvrB interaction domain BS065_04720 PF04851 Type III restriction enzyme, res subunit BS065_04730 PF00892 EamA-like transporter family BS065_04735 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BS065_04735 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BS065_04750 PF01926 50S ribosome-binding GTPase BS065_04750 PF01018 GTP1/OBG BS065_04755 PF01472 PUA domain BS065_04755 PF00696 Amino acid kinase family BS065_04765 PF07759 Protein of unknown function (DUF1615) BS065_04770 PF01207 Dihydrouridine synthase (Dus) BS065_04775 PF03060 Nitronate monooxygenase BS065_04790 PF02350 UDP-N-acetylglucosamine 2-epimerase BS065_04820 PF00875 DNA photolyase BS065_04820 PF03441 FAD binding domain of DNA photolyase BS065_04825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BS065_04830 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_04835 PF00768 D-alanyl-D-alanine carboxypeptidase BS065_04835 PF07943 Penicillin-binding protein 5, C-terminal domain BS065_04845 PF03971 Monomeric isocitrate dehydrogenase BS065_04850 PF00849 RNA pseudouridylate synthase BS065_04855 PF00180 Isocitrate/isopropylmalate dehydrogenase BS065_04870 PF06779 Uncharacterised MFS-type transporter YbfB BS065_04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_04875 PF03466 LysR substrate binding domain BS065_04885 PF02567 Phenazine biosynthesis-like protein BS065_04890 PF05193 Peptidase M16 inactive domain BS065_04890 PF00675 Insulinase (Peptidase family M16) BS065_04915 PF02581 Thiamine monophosphate synthase BS065_04920 PF00202 Aminotransferase class-III BS065_04930 PF00849 RNA pseudouridylate synthase BS065_04935 PF12137 RNA polymerase recycling family C-terminal BS065_04935 PF18339 RapA N-terminal Tudor like domain 1 BS065_04935 PF18337 RapA N-terminal Tudor like domain BS065_04935 PF00271 Helicase conserved C-terminal domain BS065_04935 PF00176 SNF2 family N-terminal domain BS065_04945 PF00440 Bacterial regulatory proteins, tetR family BS065_04950 PF00970 Oxidoreductase FAD-binding domain BS065_04950 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_04950 PF00175 Oxidoreductase NAD-binding domain BS065_04955 PF00487 Fatty acid desaturase BS065_04965 PF17754 MftR C-terminal domain BS065_04965 PF00440 Bacterial regulatory proteins, tetR family BS065_04975 PF00202 Aminotransferase class-III BS065_04980 PF00282 Pyridoxal-dependent decarboxylase conserved domain BS065_04985 PF00171 Aldehyde dehydrogenase family BS065_04990 PF01037 Lrp/AsnC ligand binding domain BS065_04995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BS065_04995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BS065_04995 PF00205 Thiamine pyrophosphate enzyme, central domain BS065_05000 PF00324 Amino acid permease BS065_05005 PF12849 PBP superfamily domain BS065_05010 PF00528 Binding-protein-dependent transport system inner membrane component BS065_05015 PF00528 Binding-protein-dependent transport system inner membrane component BS065_05020 PF00005 ABC transporter BS065_05025 PF08496 Peptidase family S49 N-terminal BS065_05025 PF01343 Peptidase family S49 BS065_05040 PF00206 Lyase BS065_05040 PF08328 Adenylosuccinate lyase C-terminal BS065_05045 PF04356 Protein of unknown function (DUF489) BS065_05055 PF13344 Haloacid dehalogenase-like hydrolase BS065_05055 PF00293 NUDIX domain BS065_05060 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_05065 PF07943 Penicillin-binding protein 5, C-terminal domain BS065_05065 PF00768 D-alanyl-D-alanine carboxypeptidase BS065_05080 PF01975 Survival protein SurE BS065_05085 PF01551 Peptidase family M23 BS065_05085 PF01476 LysM domain BS065_05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_05090 PF03466 LysR substrate binding domain BS065_05095 PF13654 AAA domain BS065_05095 PF05362 Lon protease (S16) C-terminal proteolytic domain BS065_05100 PF07690 Major Facilitator Superfamily BS065_05105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BS065_05110 PF13593 SBF-like CPA transporter family (DUF4137) BS065_05115 PF01197 Ribosomal protein L31 BS065_05130 PF04055 Radical SAM superfamily BS065_05135 PF08207 Elongation factor P (EF-P) KOW-like domain BS065_05135 PF09285 Elongation factor P, C-terminal BS065_05135 PF01132 Elongation factor P (EF-P) OB domain BS065_05140 PF13722 5TM C-terminal transporter carbon starvation CstA BS065_05140 PF02554 Carbon starvation protein CstA BS065_05145 PF04328 Selenoprotein, putative BS065_05185 PF17853 GGDEF-like domain BS065_05185 PF06018 CodY GAF-like domain BS065_05185 PF13556 PucR C-terminal helix-turn-helix domain BS065_05200 PF00171 Aldehyde dehydrogenase family BS065_05205 PF00324 Amino acid permease BS065_05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_05210 PF03466 LysR substrate binding domain BS065_05215 PF02028 BCCT, betaine/carnitine/choline family transporter BS065_05220 PF02028 BCCT, betaine/carnitine/choline family transporter BS065_05225 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BS065_05225 PF00355 Rieske [2Fe-2S] domain BS065_05235 PF18113 Rubredoxin binding C-terminal domain BS065_05235 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_05240 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BS065_05240 PF01266 FAD dependent oxidoreductase BS065_05260 PF00892 EamA-like transporter family BS065_05270 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BS065_05275 PF00083 Sugar (and other) transporter BS065_05280 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BS065_05280 PF13378 Enolase C-terminal domain-like BS065_05285 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_05285 PF08659 KR domain BS065_05285 PF16197 Ketoacyl-synthetase C-terminal extension BS065_05285 PF09277 Erythronolide synthase, docking BS065_05285 PF00550 Phosphopantetheine attachment site BS065_05285 PF14765 Polyketide synthase dehydratase BS065_05285 PF08990 Erythronolide synthase docking BS065_05285 PF08240 Alcohol dehydrogenase GroES-like domain BS065_05285 PF00698 Acyl transferase domain BS065_05285 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_05290 PF00440 Bacterial regulatory proteins, tetR family BS065_05310 PF17954 Quercetinase C-terminal cupin domain BS065_05310 PF02678 Pirin BS065_05320 PF13309 HTH domain BS065_05320 PF08348 YheO-like PAS domain BS065_05330 PF00668 Condensation domain BS065_05330 PF13193 AMP-binding enzyme C-terminal domain BS065_05330 PF00501 AMP-binding enzyme BS065_05330 PF00550 Phosphopantetheine attachment site BS065_05335 PF00975 Thioesterase domain BS065_05335 PF00550 Phosphopantetheine attachment site BS065_05335 PF00501 AMP-binding enzyme BS065_05335 PF13193 AMP-binding enzyme C-terminal domain BS065_05335 PF00668 Condensation domain BS065_05340 PF01032 FecCD transport family BS065_05345 PF01032 FecCD transport family BS065_05350 PF00005 ABC transporter BS065_05355 PF01497 Periplasmic binding protein BS065_05360 PF00593 TonB dependent receptor BS065_05360 PF07715 TonB-dependent Receptor Plug Domain BS065_05365 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BS065_05370 PF00501 AMP-binding enzyme BS065_05370 PF00668 Condensation domain BS065_05370 PF00550 Phosphopantetheine attachment site BS065_05375 PF00501 AMP-binding enzyme BS065_05375 PF13193 AMP-binding enzyme C-terminal domain BS065_05380 PF00550 Phosphopantetheine attachment site BS065_05380 PF00857 Isochorismatase family BS065_05385 PF00282 Pyridoxal-dependent decarboxylase conserved domain BS065_05395 PF00005 ABC transporter BS065_05395 PF00664 ABC transporter transmembrane region BS065_05400 PF00664 ABC transporter transmembrane region BS065_05400 PF00005 ABC transporter BS065_05405 PF00975 Thioesterase domain BS065_05415 PF00425 chorismate binding enzyme BS065_05425 PF01208 Uroporphyrinogen decarboxylase (URO-D) BS065_05430 PF05675 Protein of unknown function (DUF817) BS065_05445 PF00144 Beta-lactamase BS065_05465 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_05465 PF01799 [2Fe-2S] binding domain BS065_05470 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BS065_05470 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BS065_05485 PF00218 Indole-3-glycerol phosphate synthase BS065_05490 PF00591 Glycosyl transferase family, a/b domain BS065_05490 PF02885 Glycosyl transferase family, helical bundle domain BS065_05495 PF00593 TonB dependent receptor BS065_05495 PF07715 TonB-dependent Receptor Plug Domain BS065_05500 PF11838 ERAP1-like C-terminal domain BS065_05500 PF01433 Peptidase family M1 domain BS065_05505 PF00117 Glutamine amidotransferase class-I BS065_05515 PF00854 POT family BS065_05525 PF04345 Chorismate lyase BS065_05530 PF01040 UbiA prenyltransferase family BS065_05565 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BS065_05565 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BS065_05570 PF01784 NIF3 (NGG1p interacting factor 3) BS065_05575 PF13180 PDZ domain BS065_05580 PF12627 Probable RNA and SrmB- binding site of polymerase A BS065_05580 PF01743 Poly A polymerase head domain BS065_05585 PF03949 Malic enzyme, NAD binding domain BS065_05585 PF01515 Phosphate acetyl/butaryl transferase BS065_05585 PF00390 Malic enzyme, N-terminal domain BS065_05590 PF03707 Bacterial signalling protein N terminal repeat BS065_05590 PF00990 Diguanylate cyclase, GGDEF domain BS065_05590 PF00563 EAL domain BS065_05595 PF04452 RNA methyltransferase BS065_05600 PF02219 Methylenetetrahydrofolate reductase BS065_05605 PF05221 S-adenosyl-L-homocysteine hydrolase BS065_05605 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BS065_05620 PF09317 Domain of unknown function (DUF1974) BS065_05620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_05620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_05625 PF04055 Radical SAM superfamily BS065_05630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BS065_05630 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_05645 PF07690 Major Facilitator Superfamily BS065_05655 PF00557 Metallopeptidase family M24 BS065_05660 PF00318 Ribosomal protein S2 BS065_05665 PF00889 Elongation factor TS BS065_05675 PF12833 Helix-turn-helix domain BS065_05695 PF05036 Sporulation related domain BS065_05695 PF03330 Lytic transglycolase BS065_05700 PF13406 Transglycosylase SLT domain BS065_05705 PF01098 Cell cycle protein BS065_05715 PF14489 QueF-like protein BS065_05715 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BS065_05720 PF01061 ABC-2 type transporter BS065_05725 PF00005 ABC transporter BS065_05755 PF00464 Serine hydroxymethyltransferase BS065_05760 PF02321 Outer membrane efflux protein BS065_05765 PF00873 AcrB/AcrD/AcrF family BS065_05770 PF13533 Biotin-lipoyl like BS065_05775 PF03466 LysR substrate binding domain BS065_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_05780 PF00497 Bacterial extracellular solute-binding proteins, family 3 BS065_05785 PF00528 Binding-protein-dependent transport system inner membrane component BS065_05790 PF00528 Binding-protein-dependent transport system inner membrane component BS065_05795 PF00005 ABC transporter BS065_05800 PF00893 Small Multidrug Resistance protein BS065_05805 PF00037 4Fe-4S binding domain BS065_05815 PF00392 Bacterial regulatory proteins, gntR family BS065_05815 PF00155 Aminotransferase class I and II BS065_05820 PF02567 Phenazine biosynthesis-like protein BS065_05825 PF00970 Oxidoreductase FAD-binding domain BS065_05825 PF00175 Oxidoreductase NAD-binding domain BS065_05830 PF01980 tRNA-methyltransferase O BS065_05830 PF18389 TrmO C-terminal domain BS065_05840 PF00437 Type II/IV secretion system protein BS065_05850 PF00486 Transcriptional regulatory protein, C terminal BS065_05850 PF00072 Response regulator receiver domain BS065_05855 PF00512 His Kinase A (phospho-acceptor) domain BS065_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_05855 PF08521 Two-component sensor kinase N-terminal BS065_05865 PF00293 NUDIX domain BS065_05875 PF00905 Penicillin binding protein transpeptidase domain BS065_05875 PF14814 Bifunctional transglycosylase second domain BS065_05875 PF00912 Transglycosylase BS065_05880 PF01513 ATP-NAD kinase BS065_05885 PF07023 Protein of unknown function (DUF1315) BS065_05890 PF00591 Glycosyl transferase family, a/b domain BS065_05890 PF02885 Glycosyl transferase family, helical bundle domain BS065_05900 PF00375 Sodium:dicarboxylate symporter family BS065_05905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_05905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_05905 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_05910 PF00756 Putative esterase BS065_05915 PF00800 Prephenate dehydratase BS065_05915 PF01817 Chorismate mutase type II BS065_05915 PF01842 ACT domain BS065_05920 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BS065_05930 PF07687 Peptidase dimerisation domain BS065_05930 PF01546 Peptidase family M20/M25/M40 BS065_05935 PF12706 Beta-lactamase superfamily domain BS065_05945 PF03883 Peroxide stress protein YaaA BS065_05955 PF05690 Thiazole biosynthesis protein ThiG BS065_05965 PF04241 Protein of unknown function (DUF423) BS065_05970 PF04545 Sigma-70, region 4 BS065_05970 PF04542 Sigma-70 region 2 BS065_05970 PF00140 Sigma-70 factor, region 1.2 BS065_05980 PF00313 'Cold-shock' DNA-binding domain BS065_05985 PF00270 DEAD/DEAH box helicase BS065_05985 PF00271 Helicase conserved C-terminal domain BS065_05995 PF00881 Nitroreductase family BS065_06000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BS065_06000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BS065_06020 PF01180 Dihydroorotate dehydrogenase BS065_06025 PF02674 Colicin V production protein BS065_06030 PF00156 Phosphoribosyl transferase domain BS065_06045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BS065_06045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BS065_06050 PF01435 Peptidase family M48 BS065_06055 PF09424 Yqey-like protein BS065_06060 PF01165 Ribosomal protein S21 BS065_06065 PF00814 Glycoprotease family BS065_06085 PF00069 Protein kinase domain BS065_06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_06110 PF03466 LysR substrate binding domain BS065_06115 PF00202 Aminotransferase class-III BS065_06120 PF00171 Aldehyde dehydrogenase family BS065_06125 PF00324 Amino acid permease BS065_06155 PF04076 Bacterial OB fold (BOF) protein BS065_06180 PF00561 alpha/beta hydrolase fold BS065_06185 PF03616 Sodium/glutamate symporter BS065_06195 PF07729 FCD domain BS065_06195 PF00392 Bacterial regulatory proteins, gntR family BS065_06245 PF00083 Sugar (and other) transporter BS065_06245 PF08946 Osmosensory transporter coiled coil BS065_06270 PF00155 Aminotransferase class I and II BS065_06275 PF06826 Predicted Permease Membrane Region BS065_06275 PF02080 TrkA-C domain BS065_06285 PF04403 Paraquat-inducible protein A BS065_06290 PF02470 MlaD protein BS065_06300 PF01177 Asp/Glu/Hydantoin racemase BS065_06305 PF00892 EamA-like transporter family BS065_06310 PF07995 Glucose / Sorbosone dehydrogenase BS065_06320 PF13610 DDE domain BS065_06330 PF01636 Phosphotransferase enzyme family BS065_06335 PF13610 DDE domain BS065_06340 PF00589 Phage integrase family BS065_06340 PF13495 Phage integrase, N-terminal SAM-like domain BS065_06350 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_06355 PF13427 Domain of unknown function (DUF4111) BS065_06355 PF01909 Nucleotidyltransferase domain BS065_06360 PF00893 Small Multidrug Resistance protein BS065_06365 PF00809 Pterin binding enzyme BS065_06380 PF07091 Ribosomal RNA methyltransferase (FmrO) BS065_06405 PF01636 Phosphotransferase enzyme family BS065_06415 PF13007 Transposase C of IS166 homeodomain BS065_06415 PF03050 Transposase IS66 family BS065_06415 PF13817 IS66 C-terminal element BS065_06415 PF13005 zinc-finger binding domain of transposase IS66 BS065_06435 PF01051 Initiator Replication protein BS065_06440 PF13610 DDE domain BS065_06455 PF00375 Sodium:dicarboxylate symporter family BS065_06465 PF16123 Hydroxyacylglutathione hydrolase C-terminus BS065_06465 PF00753 Metallo-beta-lactamase superfamily BS065_06470 PF00528 Binding-protein-dependent transport system inner membrane component BS065_06475 PF00005 ABC transporter BS065_06475 PF09383 NIL domain BS065_06480 PF03180 NLPA lipoprotein BS065_06485 PF02843 Phosphoribosylglycinamide synthetase, C domain BS065_06485 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BS065_06485 PF02844 Phosphoribosylglycinamide synthetase, N domain BS065_06490 PF01808 AICARFT/IMPCHase bienzyme BS065_06490 PF02142 MGS-like domain BS065_06495 PF02954 Bacterial regulatory protein, Fis family BS065_06515 PF01134 Glucose inhibited division protein A BS065_06515 PF13932 GidA associated domain BS065_06525 PF14403 Circularly permuted ATP-grasp type 2 BS065_06535 PF08379 Bacterial transglutaminase-like N-terminal region BS065_06535 PF01841 Transglutaminase-like superfamily BS065_06545 PF00842 Alanine racemase, C-terminal domain BS065_06545 PF01168 Alanine racemase, N-terminal domain BS065_06550 PF00772 DnaB-like helicase N terminal domain BS065_06550 PF03796 DnaB-like helicase C terminal domain BS065_06555 PF01281 Ribosomal protein L9, N-terminal domain BS065_06555 PF03948 Ribosomal protein L9, C-terminal domain BS065_06560 PF01084 Ribosomal protein S18 BS065_06565 PF01250 Ribosomal protein S6 BS065_06570 PF01040 UbiA prenyltransferase family BS065_06575 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BS065_06580 PF00510 Cytochrome c oxidase subunit III BS065_06585 PF00115 Cytochrome C and Quinol oxidase polypeptide I BS065_06590 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BS065_06590 PF06481 COX Aromatic Rich Motif BS065_06600 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BS065_06600 PF02896 PEP-utilising enzyme, TIM barrel domain BS065_06600 PF00391 PEP-utilising enzyme, mobile domain BS065_06605 PF03618 Kinase/pyrophosphorylase BS065_06615 PF14883 Hypothetical glycosyl hydrolase family 13 BS065_06615 PF01522 Polysaccharide deacetylase BS065_06620 PF00535 Glycosyl transferase family 2 BS065_06625 PF13994 PgaD-like protein BS065_06635 PF00296 Luciferase-like monooxygenase BS065_06655 PF03466 LysR substrate binding domain BS065_06655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_06665 PF00472 RF-1 domain BS065_06665 PF03462 PCRF domain BS065_06670 PF17827 PrmC N-terminal domain BS065_06670 PF13847 Methyltransferase domain BS065_06675 PF00528 Binding-protein-dependent transport system inner membrane component BS065_06680 PF09084 NMT1/THI5 like BS065_06685 PF12833 Helix-turn-helix domain BS065_06690 PF00106 short chain dehydrogenase BS065_06695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_06695 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_06695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_06700 PF00501 AMP-binding enzyme BS065_06700 PF13193 AMP-binding enzyme C-terminal domain BS065_06705 PF01613 Flavin reductase like domain BS065_06710 PF00899 ThiF family BS065_06715 PF03109 ABC1 family BS065_06730 PF03814 Potassium-transporting ATPase A subunit BS065_06740 PF02669 K+-transporting ATPase, c chain BS065_06745 PF13493 Domain of unknown function (DUF4118) BS065_06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_06745 PF00512 His Kinase A (phospho-acceptor) domain BS065_06745 PF02702 Osmosensitive K+ channel His kinase sensor domain BS065_06750 PF00072 Response regulator receiver domain BS065_06750 PF00486 Transcriptional regulatory protein, C terminal BS065_06755 PF00120 Glutamine synthetase, catalytic domain BS065_06765 PF03232 Ubiquinone biosynthesis protein COQ7 BS065_06770 PF07690 Major Facilitator Superfamily BS065_06775 PF01103 Surface antigen BS065_06775 PF17243 POTRA domain TamA domain 1 BS065_06775 PF07244 Surface antigen variable number repeat BS065_06795 PF11791 Aconitate B N-terminal domain BS065_06795 PF06434 Aconitate hydratase 2 N-terminus BS065_06795 PF00330 Aconitase family (aconitate hydratase) BS065_06805 PF00520 Ion transport protein BS065_06805 PF00027 Cyclic nucleotide-binding domain BS065_06810 PF07690 Major Facilitator Superfamily BS065_06825 PF03466 LysR substrate binding domain BS065_06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_06830 PF04284 Protein of unknown function (DUF441) BS065_06840 PF01479 S4 domain BS065_06840 PF00849 RNA pseudouridylate synthase BS065_06855 PF00849 RNA pseudouridylate synthase BS065_06855 PF01479 S4 domain BS065_06860 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BS065_06865 PF08676 MutL C terminal dimerisation domain BS065_06865 PF01119 DNA mismatch repair protein, C-terminal domain BS065_06875 PF17209 Hfq protein BS065_06885 PF00881 Nitroreductase family BS065_06895 PF00149 Calcineurin-like phosphoesterase BS065_06900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BS065_06905 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BS065_06905 PF00749 tRNA synthetases class I (E and Q), catalytic domain BS065_06910 PF02540 NAD synthase BS065_06910 PF00117 Glutamine amidotransferase class-I BS065_06910 PF00958 GMP synthase C terminal domain BS065_06915 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BS065_06920 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BS065_06925 PF13520 Amino acid permease BS065_06930 PF00171 Aldehyde dehydrogenase family BS065_06945 PF00465 Iron-containing alcohol dehydrogenase BS065_06950 PF05970 PIF1-like helicase BS065_06950 PF14493 Helix-turn-helix domain BS065_06960 PF06445 GyrI-like small molecule binding domain BS065_06965 PF02110 Hydroxyethylthiazole kinase family BS065_06980 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BS065_06980 PF11940 Domain of unknown function (DUF3458) Ig-like fold BS065_06980 PF01433 Peptidase family M1 domain BS065_06990 PF00106 short chain dehydrogenase BS065_07000 PF01817 Chorismate mutase type II BS065_07005 PF01037 Lrp/AsnC ligand binding domain BS065_07025 PF00440 Bacterial regulatory proteins, tetR family BS065_07030 PF00593 TonB dependent receptor BS065_07030 PF07715 TonB-dependent Receptor Plug Domain BS065_07035 PF00924 Mechanosensitive ion channel BS065_07075 PF07715 TonB-dependent Receptor Plug Domain BS065_07075 PF00593 TonB dependent receptor BS065_07095 PF12848 ABC transporter BS065_07095 PF00005 ABC transporter BS065_07100 PF00582 Universal stress protein family BS065_07120 PF00690 Cation transporter/ATPase, N-terminus BS065_07120 PF00689 Cation transporting ATPase, C-terminus BS065_07125 PF02308 MgtC family BS065_07130 PF03594 Benzoate membrane transport protein BS065_07135 PF01037 Lrp/AsnC ligand binding domain BS065_07140 PF01810 LysE type translocator BS065_07150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_07150 PF03466 LysR substrate binding domain BS065_07160 PF02803 Thiolase, C-terminal domain BS065_07160 PF00108 Thiolase, N-terminal domain BS065_07185 PF07690 Major Facilitator Superfamily BS065_07190 PF12170 DNA polymerase III tau subunit V interacting with alpha BS065_07190 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BS065_07190 PF12169 DNA polymerase III subunits gamma and tau domain III BS065_07195 PF05506 Domain of unknown function (DUF756) BS065_07195 PF04185 Phosphoesterase family BS065_07200 PF03061 Thioesterase superfamily BS065_07205 PF00465 Iron-containing alcohol dehydrogenase BS065_07215 PF01451 Low molecular weight phosphotyrosine protein phosphatase BS065_07220 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BS065_07220 PF01565 FAD binding domain BS065_07235 PF01645 Conserved region in glutamate synthase BS065_07525 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system BS065_07560 PF08525 Opacity-associated protein A N-terminal motif BS065_07560 PF01551 Peptidase family M23 BS065_07560 PF01476 LysM domain BS065_07650 PF00665 Integrase core domain BS065_07650 PF13333 Integrase core domain BS065_07650 PF13276 HTH-like domain BS065_07660 PF12832 MFS_1 like family BS065_07670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BS065_07670 PF00289 Biotin carboxylase, N-terminal domain BS065_07670 PF02785 Biotin carboxylase C-terminal domain BS065_07675 PF00364 Biotin-requiring enzyme BS065_07680 PF01220 Dehydroquinase class II BS065_07685 PF13438 Domain of unknown function (DUF4113) BS065_07685 PF00817 impB/mucB/samB family BS065_07685 PF11799 impB/mucB/samB family C-terminal domain BS065_07690 PF00005 ABC transporter BS065_07695 PF00486 Transcriptional regulatory protein, C terminal BS065_07695 PF00072 Response regulator receiver domain BS065_07705 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_07705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BS065_07705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BS065_07705 PF04324 BFD-like [2Fe-2S] binding domain BS065_07705 PF18267 Rubredoxin NAD+ reductase C-terminal domain BS065_07705 PF13806 Rieske-like [2Fe-2S] domain BS065_07710 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_07710 PF04324 BFD-like [2Fe-2S] binding domain BS065_07710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BS065_07710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BS065_07710 PF18267 Rubredoxin NAD+ reductase C-terminal domain BS065_07715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BS065_07715 PF01568 Molydopterin dinucleotide binding domain BS065_07715 PF04324 BFD-like [2Fe-2S] binding domain BS065_07715 PF00384 Molybdopterin oxidoreductase BS065_07720 PF12804 MobA-like NTP transferase domain BS065_07725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BS065_07725 PF00384 Molybdopterin oxidoreductase BS065_07725 PF01568 Molydopterin dinucleotide binding domain BS065_07730 PF06463 Molybdenum Cofactor Synthesis C BS065_07730 PF04055 Radical SAM superfamily BS065_07740 PF02391 MoaE protein BS065_07745 PF01967 MoaC family BS065_07745 PF00994 Probable molybdopterin binding domain BS065_07750 PF03453 MoeA N-terminal region (domain I and II) BS065_07750 PF00994 Probable molybdopterin binding domain BS065_07750 PF03454 MoeA C-terminal region (domain IV) BS065_07755 PF01638 HxlR-like helix-turn-helix BS065_07760 PF00392 Bacterial regulatory proteins, gntR family BS065_07760 PF00155 Aminotransferase class I and II BS065_07765 PF00892 EamA-like transporter family BS065_07785 PF02635 DsrE/DsrF-like family BS065_07790 PF16363 GDP-mannose 4,6 dehydratase BS065_07795 PF10415 Fumarase C C-terminus BS065_07795 PF00206 Lyase BS065_07830 PF01266 FAD dependent oxidoreductase BS065_07840 PF02542 YgbB family BS065_07850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BS065_07850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BS065_07870 PF00440 Bacterial regulatory proteins, tetR family BS065_07875 PF00072 Response regulator receiver domain BS065_07875 PF02954 Bacterial regulatory protein, Fis family BS065_07875 PF00158 Sigma-54 interaction domain BS065_07880 PF00989 PAS fold BS065_07880 PF00512 His Kinase A (phospho-acceptor) domain BS065_07880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_07885 PF04055 Radical SAM superfamily BS065_07885 PF18693 TRAM domain BS065_07885 PF00919 Uncharacterized protein family UPF0004 BS065_07890 PF00696 Amino acid kinase family BS065_07895 PF01765 Ribosome recycling factor BS065_07900 PF01255 Putative undecaprenyl diphosphate synthase BS065_07910 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BS065_07910 PF13288 DXP reductoisomerase C-terminal domain BS065_07910 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BS065_07915 PF17820 PDZ domain BS065_07915 PF02163 Peptidase family M50 BS065_07915 PF13180 PDZ domain BS065_07920 PF07244 Surface antigen variable number repeat BS065_07920 PF01103 Surface antigen BS065_07930 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BS065_07930 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_07935 PF07977 FabA-like domain BS065_07940 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_07940 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BS065_07955 PF02631 RecX family BS065_07960 PF00154 recA bacterial DNA recombination protein BS065_07965 PF01479 S4 domain BS065_07970 PF13419 Haloacid dehalogenase-like hydrolase BS065_07995 PF01037 Lrp/AsnC ligand binding domain BS065_08000 PF00266 Aminotransferase class-V BS065_08005 PF00324 Amino acid permease BS065_08015 PF00082 Subtilase family BS065_08015 PF05922 Peptidase inhibitor I9 BS065_08020 PF00916 Sulfate permease family BS065_08020 PF01740 STAS domain BS065_08025 PF02586 SOS response associated peptidase (SRAP) BS065_08030 PF07995 Glucose / Sorbosone dehydrogenase BS065_08040 PF03707 Bacterial signalling protein N terminal repeat BS065_08040 PF00990 Diguanylate cyclase, GGDEF domain BS065_08040 PF00563 EAL domain BS065_08060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BS065_08060 PF02378 Phosphotransferase system, EIIC BS065_08065 PF00294 pfkB family carbohydrate kinase BS065_08070 PF00381 PTS HPr component phosphorylation site BS065_08070 PF02896 PEP-utilising enzyme, TIM barrel domain BS065_08070 PF00391 PEP-utilising enzyme, mobile domain BS065_08070 PF05524 PEP-utilising enzyme, N-terminal BS065_08070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BS065_08095 PF05525 Branched-chain amino acid transport protein BS065_08100 PF00557 Metallopeptidase family M24 BS065_08105 PF03466 LysR substrate binding domain BS065_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_08115 PF00462 Glutaredoxin BS065_08120 PF00202 Aminotransferase class-III BS065_08125 PF00478 IMP dehydrogenase / GMP reductase domain BS065_08125 PF00571 CBS domain BS065_08155 PF02881 SRP54-type protein, helical bundle domain BS065_08155 PF00448 SRP54-type protein, GTPase domain BS065_08165 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BS065_08180 PF08173 Membrane bound YbgT-like protein BS065_08185 PF02322 Cytochrome bd terminal oxidase subunit II BS065_08190 PF01654 Cytochrome bd terminal oxidase subunit I BS065_08200 PF07290 Protein of unknown function (DUF1449) BS065_08210 PF00294 pfkB family carbohydrate kinase BS065_08215 PF07715 TonB-dependent Receptor Plug Domain BS065_08215 PF00593 TonB dependent receptor BS065_08220 PF08367 Peptidase M16C associated BS065_08220 PF00675 Insulinase (Peptidase family M16) BS065_08220 PF05193 Peptidase M16 inactive domain BS065_08225 PF02253 Phospholipase A1 BS065_08230 PF02386 Cation transport protein BS065_08235 PF02254 TrkA-N domain BS065_08235 PF02080 TrkA-C domain BS065_08240 PF00291 Pyridoxal-phosphate dependent enzyme BS065_08240 PF00585 C-terminal regulatory domain of Threonine dehydratase BS065_08245 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BS065_08260 PF01118 Semialdehyde dehydrogenase, NAD binding domain BS065_08260 PF02774 Semialdehyde dehydrogenase, dimerisation domain BS065_08270 PF02617 ATP-dependent Clp protease adaptor protein ClpS BS065_08275 PF17871 AAA lid domain BS065_08275 PF10431 C-terminal, D2-small domain, of ClpB protein BS065_08275 PF00004 ATPase family associated with various cellular activities (AAA) BS065_08275 PF02861 Clp amino terminal domain, pathogenicity island component BS065_08275 PF07724 AAA domain (Cdc48 subfamily) BS065_08280 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BS065_08285 PF00793 DAHP synthetase I family BS065_08300 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_08300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_08330 PF06418 CTP synthase N-terminus BS065_08330 PF00117 Glutamine amidotransferase class-I BS065_08335 PF00793 DAHP synthetase I family BS065_08340 PF03952 Enolase, N-terminal domain BS065_08340 PF00113 Enolase, C-terminal TIM barrel domain BS065_08345 PF04239 Protein of unknown function (DUF421) BS065_08350 PF04977 Septum formation initiator BS065_08355 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BS065_08360 PF01144 Coenzyme A transferase BS065_08365 PF01144 Coenzyme A transferase BS065_08370 PF00108 Thiolase, N-terminal domain BS065_08370 PF02803 Thiolase, C-terminal domain BS065_08375 PF00206 Lyase BS065_08375 PF10397 Adenylosuccinate lyase C-terminus BS065_08380 PF00561 alpha/beta hydrolase fold BS065_08385 PF07690 Major Facilitator Superfamily BS065_08390 PF02627 Carboxymuconolactone decarboxylase family BS065_08395 PF00775 Dioxygenase BS065_08395 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal BS065_08400 PF00775 Dioxygenase BS065_08405 PF01487 Type I 3-dehydroquinase BS065_08410 PF05048 Periplasmic copper-binding protein (NosD) BS065_08415 PF04966 Carbohydrate-selective porin, OprB family BS065_08420 PF01011 PQQ enzyme repeat BS065_08420 PF13360 PQQ-like domain BS065_08430 PF04143 Sulphur transport BS065_08440 PF00753 Metallo-beta-lactamase superfamily BS065_08445 PF01614 Bacterial transcriptional regulator BS065_08445 PF09339 IclR helix-turn-helix domain BS065_08450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_08450 PF03466 LysR substrate binding domain BS065_08455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_08455 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_08455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_08470 PF00106 short chain dehydrogenase BS065_08480 PF07690 Major Facilitator Superfamily BS065_08490 PF01425 Amidase BS065_08495 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BS065_08510 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BS065_08510 PF00355 Rieske [2Fe-2S] domain BS065_08525 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_08525 PF00175 Oxidoreductase NAD-binding domain BS065_08530 PF01613 Flavin reductase like domain BS065_08535 PF02311 AraC-like ligand binding domain BS065_08535 PF12833 Helix-turn-helix domain BS065_08540 PF07833 Copper amine oxidase N-terminal domain BS065_08540 PF01179 Copper amine oxidase, enzyme domain BS065_08540 PF02727 Copper amine oxidase, N2 domain BS065_08540 PF02728 Copper amine oxidase, N3 domain BS065_08550 PF00171 Aldehyde dehydrogenase family BS065_08555 PF01804 Penicillin amidase BS065_08560 PF12146 Serine aminopeptidase, S33 BS065_08565 PF02803 Thiolase, C-terminal domain BS065_08565 PF00108 Thiolase, N-terminal domain BS065_08570 PF01144 Coenzyme A transferase BS065_08575 PF01144 Coenzyme A transferase BS065_08580 PF00775 Dioxygenase BS065_08580 PF04444 Catechol dioxygenase N terminus BS065_08585 PF02426 Muconolactone delta-isomerase BS065_08590 PF13378 Enolase C-terminal domain-like BS065_08590 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BS065_08595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_08595 PF03466 LysR substrate binding domain BS065_08605 PF07729 FCD domain BS065_08605 PF00392 Bacterial regulatory proteins, gntR family BS065_08610 PF00920 Dehydratase family BS065_08615 PF07690 Major Facilitator Superfamily BS065_08625 PF00171 Aldehyde dehydrogenase family BS065_08645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_08645 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_08645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_08655 PF02954 Bacterial regulatory protein, Fis family BS065_08655 PF06506 Propionate catabolism activator BS065_08655 PF00158 Sigma-54 interaction domain BS065_08660 PF00501 AMP-binding enzyme BS065_08660 PF13193 AMP-binding enzyme C-terminal domain BS065_08665 PF04341 Protein of unknown function, DUF485 BS065_08670 PF00474 Sodium:solute symporter family BS065_08675 PF08240 Alcohol dehydrogenase GroES-like domain BS065_08675 PF00107 Zinc-binding dehydrogenase BS065_08680 PF00171 Aldehyde dehydrogenase family BS065_08690 PF00561 alpha/beta hydrolase fold BS065_08695 PF06628 Catalase-related immune-responsive BS065_08695 PF00199 Catalase BS065_08715 PF07859 alpha/beta hydrolase fold BS065_08720 PF01047 MarR family BS065_08725 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_08725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_08730 PF00106 short chain dehydrogenase BS065_08735 PF01872 RibD C-terminal domain BS065_08740 PF09278 MerR, DNA binding BS065_08740 PF00376 MerR family regulatory protein BS065_08750 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_08760 PF12706 Beta-lactamase superfamily domain BS065_08765 PF08359 YsiA-like protein, C-terminal region BS065_08765 PF00440 Bacterial regulatory proteins, tetR family BS065_08775 PF00857 Isochorismatase family BS065_08780 PF03466 LysR substrate binding domain BS065_08780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_08785 PF07995 Glucose / Sorbosone dehydrogenase BS065_08790 PF02254 TrkA-N domain BS065_08790 PF00999 Sodium/hydrogen exchanger family BS065_08800 PF01546 Peptidase family M20/M25/M40 BS065_08800 PF07687 Peptidase dimerisation domain BS065_08815 PF08479 POTRA domain, ShlB-type BS065_08815 PF17287 POTRA domain BS065_08815 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BS065_08820 PF13018 Extended Signal Peptide of Type V secretion system BS065_08820 PF04829 Pre-toxin domain with VENN motif BS065_08820 PF05860 haemagglutination activity domain BS065_08820 PF13332 Hemagglutinin repeat BS065_08835 PF07690 Major Facilitator Superfamily BS065_08840 PF04909 Amidohydrolase BS065_08880 PF03466 LysR substrate binding domain BS065_08880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_08900 PF07690 Major Facilitator Superfamily BS065_08905 PF01842 ACT domain BS065_08905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BS065_08905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BS065_08910 PF03737 Aldolase/RraA BS065_08930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_08930 PF00529 HlyD membrane-fusion protein of T1SS BS065_08945 PF00171 Aldehyde dehydrogenase family BS065_08950 PF00920 Dehydratase family BS065_08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_08960 PF03466 LysR substrate binding domain BS065_08965 PF01370 NAD dependent epimerase/dehydratase family BS065_08970 PF07690 Major Facilitator Superfamily BS065_08975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BS065_08975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BS065_08980 PF06719 AraC-type transcriptional regulator N-terminus BS065_08980 PF12833 Helix-turn-helix domain BS065_09010 PF00005 ABC transporter BS065_09030 PF14572 Phosphoribosyl synthetase-associated domain BS065_09030 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BS065_09035 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BS065_09110 PF00196 Bacterial regulatory proteins, luxR family BS065_09115 PF01425 Amidase BS065_09120 PF13533 Biotin-lipoyl like BS065_09125 PF07690 Major Facilitator Superfamily BS065_09150 PF01975 Survival protein SurE BS065_09160 PF02824 TGS domain BS065_09160 PF04607 Region found in RelA / SpoT proteins BS065_09160 PF13291 ACT domain BS065_09215 PF12146 Serine aminopeptidase, S33 BS065_09220 PF12833 Helix-turn-helix domain BS065_09220 PF02311 AraC-like ligand binding domain BS065_09230 PF00672 HAMP domain BS065_09230 PF16527 Two-component sensor protein CpxA, periplasmic domain BS065_09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_09230 PF00512 His Kinase A (phospho-acceptor) domain BS065_09235 PF00072 Response regulator receiver domain BS065_09235 PF00486 Transcriptional regulatory protein, C terminal BS065_09240 PF00529 HlyD membrane-fusion protein of T1SS BS065_09240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_09245 PF00873 AcrB/AcrD/AcrF family BS065_09250 PF02321 Outer membrane efflux protein BS065_09255 PF12146 Serine aminopeptidase, S33 BS065_09260 PF00743 Flavin-binding monooxygenase-like BS065_09265 PF01593 Flavin containing amine oxidoreductase BS065_09280 PF01266 FAD dependent oxidoreductase BS065_09300 PF16970 Type-1 fimbrial protein, A BS065_09315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BS065_09315 PF02753 Pili assembly chaperone PapD, C-terminal domain BS065_09320 PF13953 PapC C-terminal domain BS065_09320 PF13954 PapC N-terminal domain BS065_09320 PF00577 Outer membrane usher protein BS065_09325 PF00419 Fimbrial protein BS065_09335 PF00107 Zinc-binding dehydrogenase BS065_09335 PF08240 Alcohol dehydrogenase GroES-like domain BS065_09345 PF00199 Catalase BS065_09360 PF13091 PLD-like domain BS065_09380 PF01244 Membrane dipeptidase (Peptidase family M19) BS065_09385 PF04055 Radical SAM superfamily BS065_09385 PF13186 Iron-sulfur cluster-binding domain BS065_09390 PF05402 Coenzyme PQQ synthesis protein D (PqqD) BS065_09395 PF03070 TENA/THI-4/PQQC family BS065_09400 PF12706 Beta-lactamase superfamily domain BS065_09405 PF08042 PqqA family BS065_09410 PF13090 Polyphosphate kinase C-terminal domain 2 BS065_09410 PF13089 Polyphosphate kinase N-terminal domain BS065_09410 PF17941 Polyphosphate kinase C-terminal domain 1 BS065_09410 PF02503 Polyphosphate kinase middle domain BS065_09415 PF00149 Calcineurin-like phosphoesterase BS065_09425 PF00550 Phosphopantetheine attachment site BS065_09425 PF00857 Isochorismatase family BS065_09430 PF00106 short chain dehydrogenase BS065_09435 PF00005 ABC transporter BS065_09435 PF03459 TOBE domain BS065_09440 PF00528 Binding-protein-dependent transport system inner membrane component BS065_09450 PF03459 TOBE domain BS065_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_09455 PF00355 Rieske [2Fe-2S] domain BS065_09455 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BS065_09460 PF00866 Ring hydroxylating beta subunit BS065_09465 PF00970 Oxidoreductase FAD-binding domain BS065_09465 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_09465 PF00175 Oxidoreductase NAD-binding domain BS065_09470 PF14525 AraC-binding-like domain BS065_09470 PF12833 Helix-turn-helix domain BS065_09480 PF01613 Flavin reductase like domain BS065_09495 PF01738 Dienelactone hydrolase family BS065_09500 PF07690 Major Facilitator Superfamily BS065_09505 PF06719 AraC-type transcriptional regulator N-terminus BS065_09505 PF12833 Helix-turn-helix domain BS065_09535 PF03466 LysR substrate binding domain BS065_09535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_09540 PF01144 Coenzyme A transferase BS065_09545 PF01144 Coenzyme A transferase BS065_09550 PF02667 Short chain fatty acid transporter BS065_09555 PF00108 Thiolase, N-terminal domain BS065_09555 PF02803 Thiolase, C-terminal domain BS065_09560 PF03466 LysR substrate binding domain BS065_09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_09565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_09565 PF03466 LysR substrate binding domain BS065_09580 PF00206 Lyase BS065_09580 PF10415 Fumarase C C-terminus BS065_09585 PF00593 TonB dependent receptor BS065_09585 PF07715 TonB-dependent Receptor Plug Domain BS065_09590 PF00083 Sugar (and other) transporter BS065_09605 PF00005 ABC transporter BS065_09610 PF00528 Binding-protein-dependent transport system inner membrane component BS065_09615 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BS065_09640 PF02525 Flavodoxin-like fold BS065_09645 PF01638 HxlR-like helix-turn-helix BS065_09650 PF06445 GyrI-like small molecule binding domain BS065_09650 PF12833 Helix-turn-helix domain BS065_09665 PF01925 Sulfite exporter TauE/SafE BS065_09670 PF04273 Putative phosphatase (DUF442) BS065_09670 PF00753 Metallo-beta-lactamase superfamily BS065_09675 PF04273 Putative phosphatase (DUF442) BS065_09675 PF00753 Metallo-beta-lactamase superfamily BS065_09680 PF00072 Response regulator receiver domain BS065_09680 PF00158 Sigma-54 interaction domain BS065_09680 PF02954 Bacterial regulatory protein, Fis family BS065_09685 PF01062 Bestrophin, RFP-TM, chloride channel BS065_09690 PF00107 Zinc-binding dehydrogenase BS065_09690 PF08240 Alcohol dehydrogenase GroES-like domain BS065_09695 PF00106 short chain dehydrogenase BS065_09700 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BS065_09700 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_09705 PF02817 e3 binding domain BS065_09705 PF00364 Biotin-requiring enzyme BS065_09705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BS065_09710 PF02780 Transketolase, C-terminal domain BS065_09710 PF02779 Transketolase, pyrimidine binding domain BS065_09715 PF00676 Dehydrogenase E1 component BS065_09720 PF04055 Radical SAM superfamily BS065_09735 PF00990 Diguanylate cyclase, GGDEF domain BS065_09735 PF08448 PAS fold BS065_09740 PF01264 Chorismate synthase BS065_09745 PF05175 Methyltransferase small domain BS065_09750 PF00291 Pyridoxal-phosphate dependent enzyme BS065_09760 PF00004 ATPase family associated with various cellular activities (AAA) BS065_09760 PF17862 AAA+ lid domain BS065_09760 PF01434 Peptidase family M41 BS065_09770 PF05166 YcgL domain BS065_09790 PF00570 HRDC domain BS065_09790 PF01612 3'-5' exonuclease BS065_09795 PF02132 RecR protein BS065_09795 PF13662 Toprim domain BS065_09800 PF02575 YbaB/EbfC DNA-binding family BS065_09810 PF01053 Cys/Met metabolism PLP-dependent enzyme BS065_09815 PF00561 alpha/beta hydrolase fold BS065_09820 PF08241 Methyltransferase domain BS065_09850 PF01230 HIT domain BS065_09885 PF00005 ABC transporter BS065_09890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_09900 PF02684 Lipid-A-disaccharide synthetase BS065_09905 PF07715 TonB-dependent Receptor Plug Domain BS065_09905 PF00593 TonB dependent receptor BS065_09925 PF01925 Sulfite exporter TauE/SafE BS065_09930 PF00793 DAHP synthetase I family BS065_09935 PF02654 Cobalamin-5-phosphate synthase BS065_09950 PF02277 Phosphoribosyltransferase BS065_09955 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BS065_09965 PF13419 Haloacid dehalogenase-like hydrolase BS065_09990 PF07715 TonB-dependent Receptor Plug Domain BS065_09990 PF00593 TonB dependent receptor BS065_10005 PF06276 Ferric iron reductase FhuF-like transporter BS065_10005 PF04183 IucA / IucC family BS065_10010 PF04183 IucA / IucC family BS065_10010 PF06276 Ferric iron reductase FhuF-like transporter BS065_10015 PF07690 Major Facilitator Superfamily BS065_10020 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BS065_10025 PF06276 Ferric iron reductase FhuF-like transporter BS065_10025 PF04183 IucA / IucC family BS065_10030 PF04073 Aminoacyl-tRNA editing domain BS065_10040 PF03109 ABC1 family BS065_10045 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_10045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_10045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_10050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_10050 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_10055 PF00487 Fatty acid desaturase BS065_10060 PF12852 Cupin BS065_10060 PF12833 Helix-turn-helix domain BS065_10065 PF09312 SurA N-terminal domain BS065_10065 PF00639 PPIC-type PPIASE domain BS065_10070 PF00216 Bacterial DNA-binding protein BS065_10085 PF02082 Transcriptional regulator BS065_10090 PF00266 Aminotransferase class-V BS065_10095 PF01592 NifU-like N terminal domain BS065_10100 PF01521 Iron-sulphur cluster biosynthesis BS065_10105 PF07743 HSCB C-terminal oligomerisation domain BS065_10105 PF00226 DnaJ domain BS065_10110 PF00012 Hsp70 protein BS065_10115 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_10120 PF00211 Adenylate and Guanylate cyclase catalytic domain BS065_10130 PF02559 CarD-like/TRCF domain BS065_10130 PF00270 DEAD/DEAH box helicase BS065_10130 PF00271 Helicase conserved C-terminal domain BS065_10130 PF03461 TRCF domain BS065_10130 PF17757 UvrB interaction domain BS065_10150 PF03737 Aldolase/RraA BS065_10155 PF13460 NAD(P)H-binding BS065_10160 PF01649 Ribosomal protein S20 BS065_10170 PF00459 Inositol monophosphatase family BS065_10185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BS065_10185 PF00005 ABC transporter BS065_10190 PF00528 Binding-protein-dependent transport system inner membrane component BS065_10195 PF00528 Binding-protein-dependent transport system inner membrane component BS065_10200 PF01432 Peptidase family M3 BS065_10215 PF00593 TonB dependent receptor BS065_10215 PF07715 TonB-dependent Receptor Plug Domain BS065_10225 PF01618 MotA/TolQ/ExbB proton channel family BS065_10230 PF02472 Biopolymer transport protein ExbD/TolR BS065_10235 PF02472 Biopolymer transport protein ExbD/TolR BS065_10245 PF01274 Malate synthase BS065_10250 PF03969 AFG1-like ATPase BS065_10260 PF00743 Flavin-binding monooxygenase-like BS065_10270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BS065_10280 PF00216 Bacterial DNA-binding protein BS065_10285 PF00575 S1 RNA binding domain BS065_10290 PF02224 Cytidylate kinase BS065_10300 PF14437 MafB19-like deaminase BS065_10310 PF03167 Uracil DNA glycosylase superfamily BS065_10320 PF03934 Type II secretion system (T2SS), protein K BS065_10325 PF07963 Prokaryotic N-terminal methylation motif BS065_10325 PF11612 Type II secretion system (T2SS), protein J BS065_10330 PF07963 Prokaryotic N-terminal methylation motif BS065_10330 PF02501 Type II secretion system (T2SS), protein I BS065_10345 PF01026 TatD related DNase BS065_10355 PF09115 DNA polymerase III, delta subunit, C terminal BS065_10360 PF02348 Cytidylyltransferase BS065_10365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BS065_10370 PF00005 ABC transporter BS065_10370 PF00664 ABC transporter transmembrane region BS065_10380 PF01618 MotA/TolQ/ExbB proton channel family BS065_10385 PF02195 ParB-like nuclease domain BS065_10385 PF17762 HTH domain found in ParB protein BS065_10390 PF13614 AAA domain BS065_10395 PF02527 rRNA small subunit methyltransferase G BS065_10400 PF00483 Nucleotidyl transferase BS065_10405 PF01636 Phosphotransferase enzyme family BS065_10410 PF04453 LPS transport system D BS065_10410 PF03968 OstA-like protein BS065_10415 PF09312 SurA N-terminal domain BS065_10415 PF00639 PPIC-type PPIASE domain BS065_10420 PF01116 Fructose-bisphosphate aldolase class-II BS065_10430 PF00162 Phosphoglycerate kinase BS065_10440 PF02545 Maf-like protein BS065_10445 PF08007 Cupin superfamily protein BS065_10460 PF00375 Sodium:dicarboxylate symporter family BS065_10465 PF06912 Protein of unknown function (DUF1275) BS065_10470 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BS065_10475 PF00664 ABC transporter transmembrane region BS065_10475 PF00005 ABC transporter BS065_10485 PF12833 Helix-turn-helix domain BS065_10485 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BS065_10490 PF01597 Glycine cleavage H-protein BS065_10495 PF02146 Sir2 family BS065_10500 PF00474 Sodium:solute symporter family BS065_10505 PF01037 Lrp/AsnC ligand binding domain BS065_10510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BS065_10510 PF00171 Aldehyde dehydrogenase family BS065_10510 PF01619 Proline dehydrogenase BS065_10510 PF14850 DNA-binding domain of Proline dehydrogenase BS065_10515 PF04229 GrpB protein BS065_10520 PF05958 tRNA (Uracil-5-)-methyltransferase BS065_10530 PF09992 Phosphodiester glycosidase BS065_10545 PF13545 Crp-like helix-turn-helix domain BS065_10545 PF00027 Cyclic nucleotide-binding domain BS065_10550 PF02566 OsmC-like protein BS065_10570 PF04264 YceI-like domain BS065_10580 PF00456 Transketolase, thiamine diphosphate binding domain BS065_10580 PF02779 Transketolase, pyrimidine binding domain BS065_10580 PF02780 Transketolase, C-terminal domain BS065_10585 PF02773 S-adenosylmethionine synthetase, C-terminal domain BS065_10585 PF02772 S-adenosylmethionine synthetase, central domain BS065_10585 PF00438 S-adenosylmethionine synthetase, N-terminal domain BS065_10605 PF00905 Penicillin binding protein transpeptidase domain BS065_10620 PF02075 Crossover junction endodeoxyribonuclease RuvC BS065_10625 PF01256 Carbohydrate kinase BS065_10625 PF03853 YjeF-related protein N-terminus BS065_10630 PF08331 Domain of unknown function (DUF1730) BS065_10635 PF04055 Radical SAM superfamily BS065_10635 PF06968 Biotin and Thiamin Synthesis associated domain BS065_10650 PF16970 Type-1 fimbrial protein, A BS065_10655 PF02753 Pili assembly chaperone PapD, C-terminal domain BS065_10655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BS065_10660 PF13953 PapC C-terminal domain BS065_10660 PF13954 PapC N-terminal domain BS065_10660 PF00577 Outer membrane usher protein BS065_10685 PF00892 EamA-like transporter family BS065_10695 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BS065_10705 PF03466 LysR substrate binding domain BS065_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_10725 PF00440 Bacterial regulatory proteins, tetR family BS065_10735 PF01709 Transcriptional regulator BS065_10740 PF01037 Lrp/AsnC ligand binding domain BS065_10750 PF00005 ABC transporter BS065_10755 PF00528 Binding-protein-dependent transport system inner membrane component BS065_10760 PF00528 Binding-protein-dependent transport system inner membrane component BS065_10775 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BS065_10775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_10785 PF00296 Luciferase-like monooxygenase BS065_10790 PF03180 NLPA lipoprotein BS065_10795 PF03180 NLPA lipoprotein BS065_10800 PF00005 ABC transporter BS065_10800 PF09383 NIL domain BS065_10805 PF00528 Binding-protein-dependent transport system inner membrane component BS065_10810 PF06071 Protein of unknown function (DUF933) BS065_10810 PF01926 50S ribosome-binding GTPase BS065_10835 PF03591 AzlC protein BS065_10840 PF05437 Branched-chain amino acid transport protein (AzlD) BS065_10850 PF02222 ATP-grasp domain BS065_10855 PF01966 HD domain BS065_10855 PF08335 GlnD PII-uridylyltransferase BS065_10855 PF01909 Nucleotidyltransferase domain BS065_10860 PF00155 Aminotransferase class I and II BS065_10870 PF12833 Helix-turn-helix domain BS065_10870 PF12852 Cupin BS065_10875 PF00255 Glutathione peroxidase BS065_10880 PF01641 SelR domain BS065_10885 PF00155 Aminotransferase class I and II BS065_10890 PF00375 Sodium:dicarboxylate symporter family BS065_10895 PF17763 Glutaminase/Asparaginase C-terminal domain BS065_10895 PF00710 Asparaginase, N-terminal BS065_10900 PF02811 PHP domain BS065_10900 PF14579 Helix-hairpin-helix motif BS065_10900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BS065_10900 PF01336 OB-fold nucleic acid binding domain BS065_10900 PF07733 Bacterial DNA polymerase III alpha NTPase domain BS065_10905 PF00588 SpoU rRNA Methylase family BS065_10910 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_10925 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_10925 PF13192 Thioredoxin domain BS065_10940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_10940 PF03466 LysR substrate binding domain BS065_10945 PF01758 Sodium Bile acid symporter family BS065_10950 PF01022 Bacterial regulatory protein, arsR family BS065_10955 PF03960 ArsC family BS065_10965 PF13382 Adenine deaminase C-terminal domain BS065_10965 PF01979 Amidohydrolase family BS065_10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_10975 PF03466 LysR substrate binding domain BS065_10985 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BS065_10990 PF01177 Asp/Glu/Hydantoin racemase BS065_10995 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BS065_11000 PF00528 Binding-protein-dependent transport system inner membrane component BS065_11005 PF00005 ABC transporter BS065_11010 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BS065_11020 PF00083 Sugar (and other) transporter BS065_11025 PF00296 Luciferase-like monooxygenase BS065_11030 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BS065_11030 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_11030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_11045 PF01654 Cytochrome bd terminal oxidase subunit I BS065_11050 PF02322 Cytochrome bd terminal oxidase subunit II BS065_11060 PF00155 Aminotransferase class I and II BS065_11060 PF00392 Bacterial regulatory proteins, gntR family BS065_11065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11065 PF03466 LysR substrate binding domain BS065_11080 PF00698 Acyl transferase domain BS065_11085 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG BS065_11095 PF01039 Carboxyl transferase domain BS065_11100 PF06857 Malonate decarboxylase delta subunit (MdcD) BS065_11105 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BS065_11110 PF16957 Malonate decarboxylase, alpha subunit, transporter BS065_11115 PF07690 Major Facilitator Superfamily BS065_11130 PF00392 Bacterial regulatory proteins, gntR family BS065_11130 PF00155 Aminotransferase class I and II BS065_11135 PF04172 LrgB-like family BS065_11140 PF03788 LrgA family BS065_11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11145 PF03466 LysR substrate binding domain BS065_11150 PF14834 Glutathione S-transferase, C-terminal domain BS065_11150 PF02798 Glutathione S-transferase, N-terminal domain BS065_11155 PF02798 Glutathione S-transferase, N-terminal domain BS065_11160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11160 PF03466 LysR substrate binding domain BS065_11170 PF00581 Rhodanese-like domain BS065_11175 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_11185 PF00266 Aminotransferase class-V BS065_11190 PF01810 LysE type translocator BS065_11195 PF03466 LysR substrate binding domain BS065_11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11200 PF00497 Bacterial extracellular solute-binding proteins, family 3 BS065_11205 PF00497 Bacterial extracellular solute-binding proteins, family 3 BS065_11210 PF00005 ABC transporter BS065_11215 PF00528 Binding-protein-dependent transport system inner membrane component BS065_11220 PF00528 Binding-protein-dependent transport system inner membrane component BS065_11230 PF00072 Response regulator receiver domain BS065_11235 PF09308 LuxQ, periplasmic BS065_11235 PF00072 Response regulator receiver domain BS065_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_11235 PF00512 His Kinase A (phospho-acceptor) domain BS065_11245 PF01037 Lrp/AsnC ligand binding domain BS065_11245 PF13404 AsnC-type helix-turn-helix domain BS065_11255 PF00717 Peptidase S24-like BS065_11280 PF00199 Catalase BS065_11280 PF06628 Catalase-related immune-responsive BS065_11280 PF18011 C-terminal domain found in long catalases BS065_11290 PF18146 Damage-inducible protein CinA KH domain BS065_11290 PF02464 Competence-damaged protein BS065_11290 PF00994 Probable molybdopterin binding domain BS065_11325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11325 PF03466 LysR substrate binding domain BS065_11345 PF00501 AMP-binding enzyme BS065_11345 PF13193 AMP-binding enzyme C-terminal domain BS065_11350 PF00440 Bacterial regulatory proteins, tetR family BS065_11355 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_11355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_11355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_11360 PF01039 Carboxyl transferase domain BS065_11365 PF00378 Enoyl-CoA hydratase/isomerase BS065_11370 PF02785 Biotin carboxylase C-terminal domain BS065_11370 PF00289 Biotin carboxylase, N-terminal domain BS065_11370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BS065_11370 PF00364 Biotin-requiring enzyme BS065_11375 PF00682 HMGL-like BS065_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11380 PF03466 LysR substrate binding domain BS065_11395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_11395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_11395 PF12806 Acetyl-CoA dehydrogenase C-terminal like BS065_11395 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_11405 PF07690 Major Facilitator Superfamily BS065_11415 PF01144 Coenzyme A transferase BS065_11420 PF01144 Coenzyme A transferase BS065_11425 PF07690 Major Facilitator Superfamily BS065_11430 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_11430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_11430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_11435 PF00378 Enoyl-CoA hydratase/isomerase BS065_11445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BS065_11445 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BS065_11445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BS065_11450 PF02803 Thiolase, C-terminal domain BS065_11450 PF00108 Thiolase, N-terminal domain BS065_11455 PF09339 IclR helix-turn-helix domain BS065_11460 PF07690 Major Facilitator Superfamily BS065_11465 PF03060 Nitronate monooxygenase BS065_11470 PF00378 Enoyl-CoA hydratase/isomerase BS065_11475 PF09339 IclR helix-turn-helix domain BS065_11480 PF02515 CoA-transferase family III BS065_11485 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_11485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_11485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_11490 PF07690 Major Facilitator Superfamily BS065_11495 PF13419 Haloacid dehalogenase-like hydrolase BS065_11500 PF00266 Aminotransferase class-V BS065_11505 PF01266 FAD dependent oxidoreductase BS065_11510 PF00528 Binding-protein-dependent transport system inner membrane component BS065_11515 PF00005 ABC transporter BS065_11515 PF08402 TOBE domain BS065_11525 PF07702 UTRA domain BS065_11525 PF00392 Bacterial regulatory proteins, gntR family BS065_11530 PF01494 FAD binding domain BS065_11535 PF01614 Bacterial transcriptional regulator BS065_11535 PF09339 IclR helix-turn-helix domain BS065_11540 PF02525 Flavodoxin-like fold BS065_11545 PF03466 LysR substrate binding domain BS065_11545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11550 PF02627 Carboxymuconolactone decarboxylase family BS065_11555 PF00171 Aldehyde dehydrogenase family BS065_11565 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BS065_11570 PF00171 Aldehyde dehydrogenase family BS065_11575 PF00296 Luciferase-like monooxygenase BS065_11600 PF01292 Prokaryotic cytochrome b561 BS065_11605 PF00199 Catalase BS065_11645 PF03061 Thioesterase superfamily BS065_11650 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_11655 PF08223 PaaX-like protein C-terminal domain BS065_11655 PF07848 PaaX-like protein BS065_11660 PF00501 AMP-binding enzyme BS065_11660 PF14535 AMP-binding enzyme C-terminal domain BS065_11665 PF00108 Thiolase, N-terminal domain BS065_11665 PF02803 Thiolase, C-terminal domain BS065_11670 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BS065_11670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BS065_11670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BS065_11675 PF00378 Enoyl-CoA hydratase/isomerase BS065_11680 PF00378 Enoyl-CoA hydratase/isomerase BS065_11685 PF00175 Oxidoreductase NAD-binding domain BS065_11685 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_11685 PF00970 Oxidoreductase FAD-binding domain BS065_11690 PF01883 Iron-sulfur cluster assembly protein BS065_11695 PF05138 Phenylacetic acid catabolic protein BS065_11700 PF06243 Phenylacetic acid degradation B BS065_11705 PF05138 Phenylacetic acid catabolic protein BS065_11710 PF01575 MaoC like domain BS065_11710 PF00171 Aldehyde dehydrogenase family BS065_11715 PF03315 Serine dehydratase beta chain BS065_11715 PF03313 Serine dehydratase alpha chain BS065_11720 PF13520 Amino acid permease BS065_11725 PF00171 Aldehyde dehydrogenase family BS065_11730 PF00083 Sugar (and other) transporter BS065_11740 PF04324 BFD-like [2Fe-2S] binding domain BS065_11740 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_11750 PF01266 FAD dependent oxidoreductase BS065_11755 PF05544 Proline racemase BS065_11760 PF00392 Bacterial regulatory proteins, gntR family BS065_11770 PF00701 Dihydrodipicolinate synthetase family BS065_11785 PF00376 MerR family regulatory protein BS065_11785 PF09278 MerR, DNA binding BS065_11805 PF02677 Epoxyqueuosine reductase QueH BS065_11820 PF07690 Major Facilitator Superfamily BS065_11825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BS065_11835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_11835 PF03466 LysR substrate binding domain BS065_11865 PF00004 ATPase family associated with various cellular activities (AAA) BS065_11865 PF07724 AAA domain (Cdc48 subfamily) BS065_11865 PF17871 AAA lid domain BS065_11865 PF10431 C-terminal, D2-small domain, of ClpB protein BS065_11875 PF01389 OmpA-like transmembrane domain BS065_11875 PF00691 OmpA family BS065_11945 PF00005 ABC transporter BS065_11950 PF00497 Bacterial extracellular solute-binding proteins, family 3 BS065_11955 PF01425 Amidase BS065_11960 PF08753 NikR C terminal nickel binding domain BS065_11960 PF01402 Ribbon-helix-helix protein, copG family BS065_11980 PF02525 Flavodoxin-like fold BS065_11985 PF00289 Biotin carboxylase, N-terminal domain BS065_11985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BS065_11985 PF02785 Biotin carboxylase C-terminal domain BS065_12000 PF00107 Zinc-binding dehydrogenase BS065_12000 PF13823 Alcohol dehydrogenase GroES-associated BS065_12000 PF08240 Alcohol dehydrogenase GroES-like domain BS065_12010 PF00440 Bacterial regulatory proteins, tetR family BS065_12035 PF00654 Voltage gated chloride channel BS065_12040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BS065_12040 PF00364 Biotin-requiring enzyme BS065_12040 PF00289 Biotin carboxylase, N-terminal domain BS065_12040 PF02785 Biotin carboxylase C-terminal domain BS065_12050 PF07286 Protein of unknown function (DUF1445) BS065_12055 PF03746 LamB/YcsF family BS065_12060 PF01566 Natural resistance-associated macrophage protein BS065_12065 PF03466 LysR substrate binding domain BS065_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_12080 PF14220 Domain of unknown function (DUF4329) BS065_12080 PF05593 RHS Repeat BS065_12080 PF03527 RHS protein BS065_12085 PF04717 Type VI secretion system, phage-baseplate injector BS065_12085 PF16671 Actin cross-linking domain BS065_12100 PF13419 Haloacid dehalogenase-like hydrolase BS065_12120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BS065_12120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BS065_12140 PF07690 Major Facilitator Superfamily BS065_12155 PF03279 Bacterial lipid A biosynthesis acyltransferase BS065_12160 PF00990 Diguanylate cyclase, GGDEF domain BS065_12160 PF03707 Bacterial signalling protein N terminal repeat BS065_12160 PF00563 EAL domain BS065_12165 PF00892 EamA-like transporter family BS065_12170 PF01037 Lrp/AsnC ligand binding domain BS065_12175 PF01624 MutS domain I BS065_12175 PF05192 MutS domain III BS065_12175 PF05190 MutS family domain IV BS065_12175 PF00488 MutS domain V BS065_12175 PF05188 MutS domain II BS065_12185 PF11953 Domain of unknown function (DUF3470) BS065_12185 PF00037 4Fe-4S binding domain BS065_12195 PF01596 O-methyltransferase BS065_12205 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_12210 PF01205 Uncharacterized protein family UPF0029 BS065_12220 PF03412 Peptidase C39 family BS065_12220 PF00664 ABC transporter transmembrane region BS065_12220 PF00005 ABC transporter BS065_12225 PF02321 Outer membrane efflux protein BS065_12230 PF12399 Branched-chain amino acid ATP-binding cassette transporter BS065_12230 PF00005 ABC transporter BS065_12235 PF03968 OstA-like protein BS065_12250 PF00571 CBS domain BS065_12250 PF01380 SIS domain BS065_12255 PF09190 DALR domain BS065_12255 PF01406 tRNA synthetases class I (C) catalytic domain BS065_12285 PF01638 HxlR-like helix-turn-helix BS065_12290 PF07690 Major Facilitator Superfamily BS065_12325 PF00313 'Cold-shock' DNA-binding domain BS065_12330 PF01810 LysE type translocator BS065_12365 PF13742 OB-fold nucleic acid binding domain BS065_12365 PF02601 Exonuclease VII, large subunit BS065_12405 PF00376 MerR family regulatory protein BS065_12405 PF09278 MerR, DNA binding BS065_12410 PF00403 Heavy-metal-associated domain BS065_12420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_12420 PF03466 LysR substrate binding domain BS065_12425 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BS065_12425 PF00355 Rieske [2Fe-2S] domain BS065_12430 PF00866 Ring hydroxylating beta subunit BS065_12435 PF00970 Oxidoreductase FAD-binding domain BS065_12435 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_12435 PF00175 Oxidoreductase NAD-binding domain BS065_12440 PF00106 short chain dehydrogenase BS065_12445 PF03594 Benzoate membrane transport protein BS065_12450 PF07690 Major Facilitator Superfamily BS065_12460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BS065_12460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BS065_12465 PF11898 Domain of unknown function (DUF3418) BS065_12465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BS065_12465 PF00270 DEAD/DEAH box helicase BS065_12465 PF04408 Helicase associated domain (HA2) BS065_12465 PF00271 Helicase conserved C-terminal domain BS065_12470 PF00578 AhpC/TSA family BS065_12470 PF10417 C-terminal domain of 1-Cys peroxiredoxin BS065_12490 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_12490 PF13192 Thioredoxin domain BS065_12500 PF00043 Glutathione S-transferase, C-terminal domain BS065_12500 PF02798 Glutathione S-transferase, N-terminal domain BS065_12510 PF02390 Putative methyltransferase BS065_12515 PF00043 Glutathione S-transferase, C-terminal domain BS065_12515 PF13417 Glutathione S-transferase, N-terminal domain BS065_12525 PF00691 OmpA family BS065_12525 PF13488 Glycine zipper BS065_12530 PF01979 Amidohydrolase family BS065_12535 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BS065_12535 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BS065_12545 PF02926 THUMP domain BS065_12545 PF10672 S-adenosylmethionine-dependent methyltransferase BS065_12545 PF01170 Putative RNA methylase family UPF0020 BS065_12560 PF10431 C-terminal, D2-small domain, of ClpB protein BS065_12560 PF02861 Clp amino terminal domain, pathogenicity island component BS065_12560 PF17871 AAA lid domain BS065_12560 PF07724 AAA domain (Cdc48 subfamily) BS065_12560 PF00004 ATPase family associated with various cellular activities (AAA) BS065_12585 PF02566 OsmC-like protein BS065_12590 PF13545 Crp-like helix-turn-helix domain BS065_12590 PF00027 Cyclic nucleotide-binding domain BS065_12605 PF00248 Aldo/keto reductase family BS065_12620 PF00709 Adenylosuccinate synthetase BS065_12625 PF13393 Histidyl-tRNA synthetase BS065_12630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BS065_12630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BS065_12635 PF02272 DHHA1 domain BS065_12635 PF01411 tRNA synthetases class II (A) BS065_12635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BS065_12640 PF13840 ACT domain BS065_12640 PF01842 ACT domain BS065_12640 PF00696 Amino acid kinase family BS065_12645 PF02599 Global regulator protein family BS065_12650 PF01351 Ribonuclease HII BS065_12660 PF01292 Prokaryotic cytochrome b561 BS065_12665 PF00962 Adenosine/AMP deaminase BS065_12670 PF00860 Permease family BS065_12680 PF00743 Flavin-binding monooxygenase-like BS065_12685 PF00106 short chain dehydrogenase BS065_12695 PF02678 Pirin BS065_12695 PF17954 Quercetinase C-terminal cupin domain BS065_12700 PF17932 Tetracyclin repressor-like, C-terminal domain BS065_12700 PF00440 Bacterial regulatory proteins, tetR family BS065_12710 PF00106 short chain dehydrogenase BS065_12725 PF13610 DDE domain BS065_12730 PF01636 Phosphotransferase enzyme family BS065_12750 PF13610 DDE domain BS065_12755 PF00239 Resolvase, N terminal domain BS065_12755 PF02796 Helix-turn-helix domain of resolvase BS065_12770 PF04958 Arginine N-succinyltransferase beta subunit BS065_12775 PF00202 Aminotransferase class-III BS065_12785 PF00171 Aldehyde dehydrogenase family BS065_12795 PF00392 Bacterial regulatory proteins, gntR family BS065_12795 PF07729 FCD domain BS065_12805 PF00324 Amino acid permease BS065_12810 PF01266 FAD dependent oxidoreductase BS065_12815 PF00324 Amino acid permease BS065_12860 PF03527 RHS protein BS065_12860 PF05593 RHS Repeat BS065_12865 PF04717 Type VI secretion system, phage-baseplate injector BS065_12865 PF16671 Actin cross-linking domain BS065_12885 PF03180 NLPA lipoprotein BS065_12890 PF05987 Bacterial protein of unknown function (DUF898) BS065_12905 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_12905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_12910 PF00764 Arginosuccinate synthase BS065_12915 PF00360 Phytochrome region BS065_12915 PF00990 Diguanylate cyclase, GGDEF domain BS065_12915 PF01590 GAF domain BS065_12915 PF00563 EAL domain BS065_12920 PF01979 Amidohydrolase family BS065_12925 PF00929 Exonuclease BS065_12935 PF00593 TonB dependent receptor BS065_12935 PF07715 TonB-dependent Receptor Plug Domain BS065_12940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_12940 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_12945 PF00005 ABC transporter BS065_12945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BS065_12950 PF12911 N-terminal TM domain of oligopeptide transport permease C BS065_12950 PF00528 Binding-protein-dependent transport system inner membrane component BS065_12955 PF00528 Binding-protein-dependent transport system inner membrane component BS065_12960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BS065_12965 PF01464 Transglycosylase SLT domain BS065_12965 PF01476 LysM domain BS065_12965 PF01476 LysM domain BS065_12965 PF01464 Transglycosylase SLT domain BS065_12970 PF00929 Exonuclease BS065_12980 PF09297 NADH pyrophosphatase zinc ribbon domain BS065_12980 PF00293 NUDIX domain BS065_12990 PF04972 BON domain BS065_12995 PF02021 Uncharacterised protein family UPF0102 BS065_13000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BS065_13010 PF03466 LysR substrate binding domain BS065_13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_13015 PF01810 LysE type translocator BS065_13025 PF13411 MerR HTH family regulatory protein BS065_13035 PF01494 FAD binding domain BS065_13040 PF01494 FAD binding domain BS065_13045 PF05195 Aminopeptidase P, N-terminal domain BS065_13045 PF00557 Metallopeptidase family M24 BS065_13085 PF00884 Sulfatase BS065_13085 PF08019 Phosphoethanolamine transferase EptA/EptB BS065_13130 PF01476 LysM domain BS065_13130 PF08525 Opacity-associated protein A N-terminal motif BS065_13130 PF01551 Peptidase family M23 BS065_13450 PF01812 5-formyltetrahydrofolate cyclo-ligase family BS065_13460 PF05662 Coiled stalk of trimeric autotransporter adhesin BS065_13460 PF05658 Head domain of trimeric autotransporter adhesin BS065_13460 PF03895 YadA-like membrane anchor domain BS065_13460 PF13018 Extended Signal Peptide of Type V secretion system BS065_13465 PF02190 ATP-dependent protease La (LON) substrate-binding domain BS065_13465 PF00004 ATPase family associated with various cellular activities (AAA) BS065_13465 PF05362 Lon protease (S16) C-terminal proteolytic domain BS065_13470 PF02590 Predicted SPOUT methyltransferase BS065_13475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BS065_13485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BS065_13485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BS065_13490 PF04060 Putative Fe-S cluster BS065_13495 PF00730 HhH-GPD superfamily base excision DNA repair protein BS065_13495 PF00633 Helix-hairpin-helix motif BS065_13495 PF10576 Iron-sulfur binding domain of endonuclease III BS065_13500 PF05191 Adenylate kinase, active site lid BS065_13515 PF00905 Penicillin binding protein transpeptidase domain BS065_13515 PF03717 Penicillin-binding Protein dimerisation domain BS065_13530 PF02492 CobW/HypB/UreG, nucleotide-binding domain BS065_13535 PF01730 UreF BS065_13540 PF02814 UreE urease accessory protein, N-terminal domain BS065_13540 PF05194 UreE urease accessory protein, C-terminal domain BS065_13550 PF00699 Urease beta subunit BS065_13555 PF00547 Urease, gamma subunit BS065_13560 PF01774 UreD urease accessory protein BS065_13575 PF00463 Isocitrate lyase family BS065_13580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_13580 PF03466 LysR substrate binding domain BS065_13585 PF03471 Transporter associated domain BS065_13585 PF00571 CBS domain BS065_13585 PF01595 Cyclin M transmembrane N-terminal domain BS065_13595 PF03600 Citrate transporter BS065_13610 PF00009 Elongation factor Tu GTP binding domain BS065_13615 PF01507 Phosphoadenosine phosphosulfate reductase family BS065_13620 PF14052 Capsule assembly protein Wzi BS065_13625 PF00152 tRNA synthetases class II (D, K and N) BS065_13625 PF01336 OB-fold nucleic acid binding domain BS065_13640 PF00301 Rubredoxin BS065_13645 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_13645 PF18113 Rubredoxin binding C-terminal domain BS065_13650 PF00561 alpha/beta hydrolase fold BS065_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_13655 PF03466 LysR substrate binding domain BS065_13665 PF17941 Polyphosphate kinase C-terminal domain 1 BS065_13665 PF13089 Polyphosphate kinase N-terminal domain BS065_13665 PF02503 Polyphosphate kinase middle domain BS065_13665 PF13090 Polyphosphate kinase C-terminal domain 2 BS065_13670 PF00912 Transglycosylase BS065_13675 PF01694 Rhomboid family BS065_13685 PF00005 ABC transporter BS065_13695 PF00484 Carbonic anhydrase BS065_13700 PF00561 alpha/beta hydrolase fold BS065_13710 PF00593 TonB dependent receptor BS065_13710 PF07715 TonB-dependent Receptor Plug Domain BS065_13715 PF01521 Iron-sulphur cluster biosynthesis BS065_13715 PF01106 NifU-like domain BS065_13725 PF00884 Sulfatase BS065_13730 PF03781 Sulfatase-modifying factor enzyme 1 BS065_13745 PF00291 Pyridoxal-phosphate dependent enzyme BS065_13750 PF01384 Phosphate transporter family BS065_13755 PF02607 B12 binding domain BS065_13755 PF02310 B12 binding domain BS065_13755 PF02965 Vitamin B12 dependent methionine synthase, activation domain BS065_13755 PF02574 Homocysteine S-methyltransferase BS065_13755 PF00809 Pterin binding enzyme BS065_13760 PF02779 Transketolase, pyrimidine binding domain BS065_13760 PF02780 Transketolase, C-terminal domain BS065_13765 PF00456 Transketolase, thiamine diphosphate binding domain BS065_13770 PF07690 Major Facilitator Superfamily BS065_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_13780 PF03466 LysR substrate binding domain BS065_13795 PF01263 Aldose 1-epimerase BS065_13800 PF07690 Major Facilitator Superfamily BS065_13805 PF02311 AraC-like ligand binding domain BS065_13805 PF12833 Helix-turn-helix domain BS065_13810 PF04960 Glutaminase BS065_13815 PF01327 Polypeptide deformylase BS065_13820 PF07690 Major Facilitator Superfamily BS065_13830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BS065_13830 PF00205 Thiamine pyrophosphate enzyme, central domain BS065_13830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BS065_13835 PF00171 Aldehyde dehydrogenase family BS065_13840 PF01958 Domain of unknown function DUF108 BS065_13840 PF03447 Homoserine dehydrogenase, NAD binding domain BS065_13850 PF12697 Alpha/beta hydrolase family BS065_13860 PF07690 Major Facilitator Superfamily BS065_13865 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_13865 PF14759 Reductase C-terminal BS065_13870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BS065_13880 PF00355 Rieske [2Fe-2S] domain BS065_13890 PF00355 Rieske [2Fe-2S] domain BS065_13895 PF01614 Bacterial transcriptional regulator BS065_13895 PF09339 IclR helix-turn-helix domain BS065_13910 PF00378 Enoyl-CoA hydratase/isomerase BS065_13920 PF00535 Glycosyl transferase family 2 BS065_13925 PF14883 Hypothetical glycosyl hydrolase family 13 BS065_13925 PF01522 Polysaccharide deacetylase BS065_13930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BS065_13935 PF07152 YaeQ protein BS065_13940 PF00375 Sodium:dicarboxylate symporter family BS065_13945 PF02492 CobW/HypB/UreG, nucleotide-binding domain BS065_13945 PF07683 Cobalamin synthesis protein cobW C-terminal domain BS065_13955 PF03061 Thioesterase superfamily BS065_13965 PF02028 BCCT, betaine/carnitine/choline family transporter BS065_13970 PF02028 BCCT, betaine/carnitine/choline family transporter BS065_13975 PF00440 Bacterial regulatory proteins, tetR family BS065_13975 PF13977 BetI-type transcriptional repressor, C-terminal BS065_13980 PF00171 Aldehyde dehydrogenase family BS065_13985 PF05199 GMC oxidoreductase BS065_13985 PF00732 GMC oxidoreductase BS065_13990 PF06039 Malate:quinone oxidoreductase (Mqo) BS065_14000 PF02574 Homocysteine S-methyltransferase BS065_14005 PF13520 Amino acid permease BS065_14030 PF00701 Dihydrodipicolinate synthetase family BS065_14035 PF00083 Sugar (and other) transporter BS065_14155 PF02768 DNA polymerase III beta subunit, C-terminal domain BS065_14155 PF00712 DNA polymerase III beta subunit, N-terminal domain BS065_14155 PF02767 DNA polymerase III beta subunit, central domain BS065_14195 PF05016 ParE toxin of type II toxin-antitoxin system, parDE BS065_14345 PF07007 Lysozyme inhibitor LprI BS065_14390 PF01695 IstB-like ATP binding protein BS065_14400 PF00145 C-5 cytosine-specific DNA methylase BS065_14445 PF01381 Helix-turn-helix BS065_14445 PF00717 Peptidase S24-like BS065_14480 PF00929 Exonuclease BS065_14550 PF07690 Major Facilitator Superfamily BS065_14555 PF13533 Biotin-lipoyl like BS065_14560 PF03061 Thioesterase superfamily BS065_14565 PF00490 Delta-aminolevulinic acid dehydratase BS065_14570 PF01266 FAD dependent oxidoreductase BS065_14575 PF01370 NAD dependent epimerase/dehydratase family BS065_14575 PF08338 Domain of unknown function (DUF1731) BS065_14595 PF12320 Type 5 capsule protein repressor C-terminal domain BS065_14595 PF00149 Calcineurin-like phosphoesterase BS065_14605 PF01168 Alanine racemase, N-terminal domain BS065_14610 PF00437 Type II/IV secretion system protein BS065_14615 PF00437 Type II/IV secretion system protein BS065_14620 PF01475 Ferric uptake regulator family BS065_14625 PF04355 SmpA / OmlA family BS065_14630 PF03658 RnfH family Ubiquitin BS065_14645 PF01814 Hemerythrin HHE cation binding domain BS065_14650 PF13230 Glutamine amidotransferases class-II BS065_14660 PF00696 Amino acid kinase family BS065_14665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BS065_14665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BS065_14665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BS065_14665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BS065_14670 PF00692 dUTPase BS065_14675 PF13361 UvrD-like helicase C-terminal domain BS065_14675 PF00580 UvrD/REP helicase N-terminal domain BS065_14680 PF00691 OmpA family BS065_14680 PF13488 Glycine zipper BS065_14685 PF01553 Acyltransferase BS065_14695 PF03775 Septum formation inhibitor MinC, C-terminal domain BS065_14700 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BS065_14705 PF03776 Septum formation topological specificity factor MinE BS065_14725 PF01810 LysE type translocator BS065_14730 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BS065_14730 PF09397 Ftsk gamma domain BS065_14730 PF17854 FtsK alpha domain BS065_14730 PF01580 FtsK/SpoIIIE family BS065_14735 PF07992 Pyridine nucleotide-disulphide oxidoreductase BS065_14740 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BS065_14745 PF04376 Arginine-tRNA-protein transferase, N terminus BS065_14745 PF04377 Arginine-tRNA-protein transferase, C terminus BS065_14750 PF00583 Acetyltransferase (GNAT) family BS065_14765 PF03143 Elongation factor Tu C-terminal domain BS065_14765 PF03144 Elongation factor Tu domain 2 BS065_14765 PF00009 Elongation factor Tu GTP binding domain BS065_14770 PF00009 Elongation factor Tu GTP binding domain BS065_14770 PF03144 Elongation factor Tu domain 2 BS065_14770 PF03764 Elongation factor G, domain IV BS065_14770 PF00679 Elongation factor G C-terminus BS065_14770 PF14492 Elongation Factor G, domain II BS065_14775 PF00177 Ribosomal protein S7p/S5e BS065_14780 PF00164 Ribosomal protein S12/S23 BS065_14790 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_14790 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_14800 PF02678 Pirin BS065_14800 PF05726 Pirin C-terminal cupin domain BS065_14810 PF02540 NAD synthase BS065_14810 PF00795 Carbon-nitrogen hydrolase BS065_14825 PF00970 Oxidoreductase FAD-binding domain BS065_14825 PF00111 2Fe-2S iron-sulfur cluster binding domain BS065_14825 PF00175 Oxidoreductase NAD-binding domain BS065_14830 PF00171 Aldehyde dehydrogenase family BS065_14835 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BS065_14835 PF00355 Rieske [2Fe-2S] domain BS065_14840 PF07859 alpha/beta hydrolase fold BS065_14845 PF02028 BCCT, betaine/carnitine/choline family transporter BS065_14850 PF00180 Isocitrate/isopropylmalate dehydrogenase BS065_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_14855 PF03466 LysR substrate binding domain BS065_14875 PF00037 4Fe-4S binding domain BS065_14880 PF01467 Cytidylyltransferase-like BS065_14885 PF01668 SmpB protein BS065_14890 PF03358 NADPH-dependent FMN reductase BS065_14900 PF01479 S4 domain BS065_14900 PF00849 RNA pseudouridylate synthase BS065_14905 PF13525 Outer membrane lipoprotein BS065_14910 PF08278 DNA primase DnaG DnaB-binding BS065_14910 PF01807 CHC2 zinc finger BS065_14910 PF10410 DnaB-helicase binding domain of primase BS065_14910 PF08275 DNA primase catalytic core, N-terminal domain BS065_14915 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BS065_14915 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BS065_14915 PF01488 Shikimate / quinate 5-dehydrogenase BS065_14925 PF03550 Outer membrane lipoprotein LolB BS065_14930 PF00288 GHMP kinases N terminal domain BS065_14930 PF08544 GHMP kinases C terminal BS065_14955 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BS065_14955 PF14572 Phosphoribosyl synthetase-associated domain BS065_14960 PF01386 Ribosomal L25p family BS065_14965 PF01195 Peptidyl-tRNA hydrolase BS065_14970 PF02261 Aspartate decarboxylase BS065_14985 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BS065_14995 PF08543 Phosphomethylpyrimidine kinase BS065_14995 PF03070 TENA/THI-4/PQQC family BS065_14995 PF02581 Thiamine monophosphate synthase BS065_15000 PF01476 LysM domain BS065_15000 PF04972 BON domain BS065_15005 PF00550 Phosphopantetheine attachment site BS065_15015 PF00698 Acyl transferase domain BS065_15020 PF01783 Ribosomal L32p protein family BS065_15025 PF02620 Large ribosomal RNA subunit accumulation protein YceD BS065_15030 PF04315 Elongation factor P hydroxylase BS065_15035 PF01300 Telomere recombination BS065_15040 PF02616 Segregation and condensation protein ScpA BS065_15045 PF04079 Segregation and condensation complex subunit ScpB BS065_15050 PF00849 RNA pseudouridylate synthase BS065_15050 PF01479 S4 domain BS065_15065 PF00155 Aminotransferase class I and II BS065_15070 PF06968 Biotin and Thiamin Synthesis associated domain BS065_15070 PF00202 Aminotransferase class-III BS065_15070 PF04055 Radical SAM superfamily BS065_15075 PF08241 Methyltransferase domain BS065_15075 PF12697 Alpha/beta hydrolase family BS065_15080 PF02358 Trehalose-phosphatase BS065_15085 PF00982 Glycosyltransferase family 20 BS065_15090 PF07690 Major Facilitator Superfamily BS065_15095 PF00210 Ferritin-like domain BS065_15100 PF01653 NAD-dependent DNA ligase adenylation domain BS065_15100 PF00533 BRCA1 C Terminus (BRCT) domain BS065_15100 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BS065_15100 PF12826 Helix-hairpin-helix motif BS065_15100 PF03120 NAD-dependent DNA ligase OB-fold domain BS065_15110 PF02463 RecF/RecN/SMC N terminal domain BS065_15110 PF06470 SMC proteins Flexible Hinge Domain BS065_15120 PF01925 Sulfite exporter TauE/SafE BS065_15130 PF03309 Type III pantothenate kinase BS065_15135 PF02881 SRP54-type protein, helical bundle domain BS065_15135 PF00448 SRP54-type protein, GTPase domain BS065_15135 PF02978 Signal peptide binding domain BS065_15145 PF01207 Dihydrouridine synthase (Dus) BS065_15175 PF00692 dUTPase BS065_15190 PF01048 Phosphorylase superfamily BS065_15200 PF10609 NUBPL iron-transfer P-loop NTPase BS065_15210 PF09334 tRNA synthetases class I (M) BS065_15210 PF01588 Putative tRNA binding domain BS065_15235 PF13533 Biotin-lipoyl like BS065_15240 PF00291 Pyridoxal-phosphate dependent enzyme BS065_15255 PF05552 Conserved TM helix BS065_15270 PF00175 Oxidoreductase NAD-binding domain BS065_15270 PF00970 Oxidoreductase FAD-binding domain BS065_15275 PF03466 LysR substrate binding domain BS065_15275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_15280 PF00313 'Cold-shock' DNA-binding domain BS065_15290 PF00361 Proton-conducting membrane transporter BS065_15295 PF00361 Proton-conducting membrane transporter BS065_15300 PF00361 Proton-conducting membrane transporter BS065_15300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BS065_15305 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BS065_15310 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BS065_15315 PF12838 4Fe-4S dicluster domain BS065_15320 PF00146 NADH dehydrogenase BS065_15325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BS065_15325 PF00384 Molybdopterin oxidoreductase BS065_15325 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BS065_15330 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BS065_15330 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BS065_15330 PF10531 SLBB domain BS065_15340 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BS065_15340 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BS065_15345 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BS065_15355 PF00990 Diguanylate cyclase, GGDEF domain BS065_15355 PF17151 Periplasmic sensor domain BS065_15365 PF00512 His Kinase A (phospho-acceptor) domain BS065_15365 PF00672 HAMP domain BS065_15365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_15370 PF00072 Response regulator receiver domain BS065_15370 PF00486 Transcriptional regulatory protein, C terminal BS065_15380 PF03477 ATP cone domain BS065_15380 PF02867 Ribonucleotide reductase, barrel domain BS065_15380 PF00317 Ribonucleotide reductase, all-alpha domain BS065_15390 PF00268 Ribonucleotide reductase, small chain BS065_15400 PF00672 HAMP domain BS065_15400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_15400 PF00512 His Kinase A (phospho-acceptor) domain BS065_15400 PF13755 Sensor N-terminal transmembrane domain BS065_15400 PF13756 Stimulus-sensing domain BS065_15470 PF13360 PQQ-like domain BS065_15470 PF01011 PQQ enzyme repeat BS065_15490 PF02567 Phenazine biosynthesis-like protein BS065_15520 PF01613 Flavin reductase like domain BS065_15525 PF01717 Cobalamin-independent synthase, Catalytic domain BS065_15525 PF08267 Cobalamin-independent synthase, N-terminal domain BS065_15535 PF03466 LysR substrate binding domain BS065_15535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_15540 PF01810 LysE type translocator BS065_15550 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term BS065_15550 PF12833 Helix-turn-helix domain BS065_15555 PF07687 Peptidase dimerisation domain BS065_15555 PF01546 Peptidase family M20/M25/M40 BS065_15565 PF03466 LysR substrate binding domain BS065_15565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_15575 PF07690 Major Facilitator Superfamily BS065_15585 PF03466 LysR substrate binding domain BS065_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_15590 PF00890 FAD binding domain BS065_15590 PF14537 Cytochrome c3 BS065_15600 PF02515 CoA-transferase family III BS065_15605 PF07690 Major Facilitator Superfamily BS065_15610 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_15610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_15610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_15615 PF03466 LysR substrate binding domain BS065_15620 PF00107 Zinc-binding dehydrogenase BS065_15620 PF08240 Alcohol dehydrogenase GroES-like domain BS065_15625 PF00962 Adenosine/AMP deaminase BS065_15650 PF02445 Quinolinate synthetase A protein BS065_15655 PF01960 ArgJ family BS065_15660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BS065_15660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BS065_15665 PF00893 Small Multidrug Resistance protein BS065_15675 PF05275 Copper resistance protein B precursor (CopB) BS065_15680 PF00394 Multicopper oxidase BS065_15680 PF07731 Multicopper oxidase BS065_15680 PF07732 Multicopper oxidase BS065_15695 PF00834 Ribulose-phosphate 3 epimerase family BS065_15715 PF04445 Putative SAM-dependent methyltransferase BS065_15720 PF00814 Glycoprotease family BS065_15725 PF00132 Bacterial transferase hexapeptide (six repeats) BS065_15730 PF00293 NUDIX domain BS065_15790 PF04715 Anthranilate synthase component I, N terminal region BS065_15790 PF00425 chorismate binding enzyme BS065_15795 PF00155 Aminotransferase class I and II BS065_15800 PF00815 Histidinol dehydrogenase BS065_15805 PF01634 ATP phosphoribosyltransferase BS065_15810 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BS065_15815 PF01722 BolA-like protein BS065_15820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BS065_15825 PF00309 Sigma-54 factor, Activator interacting domain (AID) BS065_15825 PF04963 Sigma-54 factor, core binding domain BS065_15825 PF04552 Sigma-54, DNA binding domain BS065_15870 PF00795 Carbon-nitrogen hydrolase BS065_15880 PF01047 MarR family BS065_15885 PF02566 OsmC-like protein BS065_15890 PF00437 Type II/IV secretion system protein BS065_15910 PF01367 5'-3' exonuclease, C-terminal SAM fold BS065_15910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BS065_15910 PF00476 DNA polymerase family A BS065_15910 PF01612 3'-5' exonuclease BS065_15915 PF02325 YGGT family BS065_15920 PF14748 Pyrroline-5-carboxylate reductase dimerisation BS065_15920 PF03807 NADP oxidoreductase coenzyme F420-dependent BS065_15925 PF01171 PP-loop family BS065_15925 PF11734 TilS substrate C-terminal domain BS065_15925 PF09179 TilS substrate binding domain BS065_15930 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BS065_15935 PF02541 Ppx/GppA phosphatase family BS065_15940 PF00085 Thioredoxin BS065_15945 PF07497 Rho termination factor, RNA-binding domain BS065_15945 PF07498 Rho termination factor, N-terminal domain BS065_15945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BS065_15955 PF00216 Bacterial DNA-binding protein BS065_15960 PF01588 Putative tRNA binding domain BS065_15960 PF03147 Ferredoxin-fold anticodon binding domain BS065_15960 PF03484 tRNA synthetase B5 domain BS065_15960 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BS065_15960 PF03483 B3/4 domain BS065_15965 PF01409 tRNA synthetases class II core domain (F) BS065_15965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BS065_15985 PF00453 Ribosomal protein L20 BS065_15990 PF01632 Ribosomal protein L35 BS065_16000 PF07690 Major Facilitator Superfamily BS065_16005 PF09335 SNARE associated Golgi protein BS065_16010 PF02798 Glutathione S-transferase, N-terminal domain BS065_16010 PF00043 Glutathione S-transferase, C-terminal domain BS065_16020 PF00707 Translation initiation factor IF-3, C-terminal domain BS065_16020 PF05198 Translation initiation factor IF-3, N-terminal domain BS065_16025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BS065_16025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BS065_16025 PF03129 Anticodon binding domain BS065_16025 PF02824 TGS domain BS065_16030 PF13193 AMP-binding enzyme C-terminal domain BS065_16030 PF00501 AMP-binding enzyme BS065_16035 PF04751 Protein of unknown function (DUF615) BS065_16040 PF00381 PTS HPr component phosphorylation site BS065_16045 PF03668 P-loop ATPase protein family BS065_16050 PF02569 Pantoate-beta-alanine ligase BS065_16055 PF02548 Ketopantoate hydroxymethyltransferase BS065_16060 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BS065_16065 PF12626 Polymerase A arginine-rich C-terminus BS065_16065 PF12627 Probable RNA and SrmB- binding site of polymerase A BS065_16065 PF01743 Poly A polymerase head domain BS065_16075 PF03819 MazG nucleotide pyrophosphohydrolase domain BS065_16085 PF13291 ACT domain BS065_16085 PF02824 TGS domain BS065_16085 PF04607 Region found in RelA / SpoT proteins BS065_16090 PF05958 tRNA (Uracil-5-)-methyltransferase BS065_16105 PF00672 HAMP domain BS065_16105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_16105 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BS065_16105 PF00512 His Kinase A (phospho-acceptor) domain BS065_16105 PF01627 Hpt domain BS065_16105 PF00072 Response regulator receiver domain BS065_16110 PF00378 Enoyl-CoA hydratase/isomerase BS065_16115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BS065_16115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BS065_16120 PF01261 Xylose isomerase-like TIM barrel BS065_16130 PF00106 short chain dehydrogenase BS065_16135 PF02233 NAD(P) transhydrogenase beta subunit BS065_16140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BS065_16145 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BS065_16145 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BS065_16150 PF00892 EamA-like transporter family BS065_16160 PF07690 Major Facilitator Superfamily BS065_16165 PF01207 Dihydrouridine synthase (Dus) BS065_16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_16175 PF03466 LysR substrate binding domain BS065_16180 PF00899 ThiF family BS065_16195 PF01026 TatD related DNase BS065_16210 PF00009 Elongation factor Tu GTP binding domain BS065_16210 PF16658 Class II release factor RF3, C-terminal domain BS065_16210 PF03144 Elongation factor Tu domain 2 BS065_16235 PF00563 EAL domain BS065_16235 PF00990 Diguanylate cyclase, GGDEF domain BS065_16235 PF03707 Bacterial signalling protein N terminal repeat BS065_16240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BS065_16240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BS065_16245 PF10369 Small subunit of acetolactate synthase BS065_16250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BS065_16250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BS065_16250 PF00205 Thiamine pyrophosphate enzyme, central domain BS065_16265 PF09334 tRNA synthetases class I (M) BS065_16265 PF13603 Leucyl-tRNA synthetase, Domain 2 BS065_16265 PF00133 tRNA synthetases class I (I, L, M and V) BS065_16265 PF08264 Anticodon-binding domain of tRNA BS065_16280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BS065_16285 PF12704 MacB-like periplasmic core domain BS065_16285 PF02687 FtsX-like permease family BS065_16285 PF00005 ABC transporter BS065_16290 PF02321 Outer membrane efflux protein BS065_16305 PF00929 Exonuclease BS065_16310 PF03193 RsgA GTPase BS065_16320 PF00462 Glutaredoxin BS065_16325 PF02556 Preprotein translocase subunit SecB BS065_16340 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_16340 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_16355 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_16355 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_16365 PF04820 Tryptophan halogenase BS065_16385 PF00221 Aromatic amino acid lyase BS065_16400 PF00501 AMP-binding enzyme BS065_16400 PF13193 AMP-binding enzyme C-terminal domain BS065_16410 PF00550 Phosphopantetheine attachment site BS065_16415 PF00550 Phosphopantetheine attachment site BS065_16430 PF01926 50S ribosome-binding GTPase BS065_16430 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BS065_16435 PF13360 PQQ-like domain BS065_16445 PF03129 Anticodon binding domain BS065_16445 PF13393 Histidyl-tRNA synthetase BS065_16450 PF04551 GcpE protein BS065_16455 PF13464 Domain of unknown function (DUF4115) BS065_16465 PF04055 Radical SAM superfamily BS065_16470 PF00334 Nucleoside diphosphate kinase BS065_16475 PF04384 Iron-sulphur cluster assembly BS065_16480 PF01569 PAP2 superfamily BS065_16485 PF00534 Glycosyl transferases group 1 BS065_16485 PF13439 Glycosyltransferase Family 4 BS065_16490 PF17804 Tail specific protease N-terminal domain BS065_16490 PF03572 Peptidase family S41 BS065_16490 PF11818 C-terminal domain of tail specific protease (DUF3340) BS065_16490 PF00595 PDZ domain BS065_16495 PF00933 Glycosyl hydrolase family 3 N terminal domain BS065_16505 PF00561 alpha/beta hydrolase fold BS065_16510 PF00171 Aldehyde dehydrogenase family BS065_16515 PF00171 Aldehyde dehydrogenase family BS065_16520 PF01202 Shikimate kinase BS065_16525 PF02447 GntP family permease BS065_16530 PF01081 KDPG and KHG aldolase BS065_16535 PF00920 Dehydratase family BS065_16540 PF00871 Acetokinase family BS065_16545 PF01515 Phosphate acetyl/butaryl transferase BS065_16545 PF07085 DRTGG domain BS065_16550 PF05681 Fumarate hydratase (Fumerase) BS065_16550 PF05683 Fumarase C-terminus BS065_16565 PF06689 ClpX C4-type zinc finger BS065_16565 PF07724 AAA domain (Cdc48 subfamily) BS065_16565 PF10431 C-terminal, D2-small domain, of ClpB protein BS065_16570 PF00574 Clp protease BS065_16575 PF05697 Bacterial trigger factor protein (TF) BS065_16575 PF05698 Bacterial trigger factor protein (TF) C-terminus BS065_16575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BS065_16580 PF07715 TonB-dependent Receptor Plug Domain BS065_16580 PF00593 TonB dependent receptor BS065_16585 PF13640 2OG-Fe(II) oxygenase superfamily BS065_16585 PF18331 PKHD-type hydroxylase C-terminal domain BS065_16590 PF00682 HMGL-like BS065_16590 PF08502 LeuA allosteric (dimerisation) domain BS065_16595 PF00561 alpha/beta hydrolase fold BS065_16600 PF00561 alpha/beta hydrolase fold BS065_16600 PF07021 Methionine biosynthesis protein MetW BS065_16610 PF01725 Ham1 family BS065_16620 PF02416 mttA/Hcf106 family BS065_16625 PF02416 mttA/Hcf106 family BS065_16630 PF00902 Sec-independent protein translocase protein (TatC) BS065_16650 PF01790 Prolipoprotein diacylglyceryl transferase BS065_16665 PF00303 Thymidylate synthase BS065_16670 PF00186 Dihydrofolate reductase BS065_16680 PF01625 Peptide methionine sulfoxide reductase BS065_16690 PF01618 MotA/TolQ/ExbB proton channel family BS065_16700 PF00551 Formyl transferase BS065_16700 PF01842 ACT domain BS065_16710 PF00171 Aldehyde dehydrogenase family BS065_16715 PF00830 Ribosomal L28 family BS065_16720 PF00471 Ribosomal protein L33 BS065_16725 PF00999 Sodium/hydrogen exchanger family BS065_16725 PF02254 TrkA-N domain BS065_16745 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BS065_16750 PF00580 UvrD/REP helicase N-terminal domain BS065_16750 PF13361 UvrD-like helicase C-terminal domain BS065_16765 PF01751 Toprim domain BS065_16765 PF08272 Topoisomerase I zinc-ribbon-like BS065_16765 PF01131 DNA topoisomerase BS065_16765 PF01396 Topoisomerase DNA binding C4 zinc finger BS065_16775 PF01638 HxlR-like helix-turn-helix BS065_16780 PF00107 Zinc-binding dehydrogenase BS065_16780 PF08240 Alcohol dehydrogenase GroES-like domain BS065_16795 PF01810 LysE type translocator BS065_16800 PF03279 Bacterial lipid A biosynthesis acyltransferase BS065_16810 PF00375 Sodium:dicarboxylate symporter family BS065_16820 PF02774 Semialdehyde dehydrogenase, dimerisation domain BS065_16820 PF01118 Semialdehyde dehydrogenase, NAD binding domain BS065_16840 PF01416 tRNA pseudouridine synthase BS065_16850 PF01176 Translation initiation factor 1A / IF-1 BS065_16865 PF00180 Isocitrate/isopropylmalate dehydrogenase BS065_16875 PF00694 Aconitase C-terminal domain BS065_16880 PF00330 Aconitase family (aconitate hydratase) BS065_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_16890 PF03466 LysR substrate binding domain BS065_16910 PF00293 NUDIX domain BS065_16915 PF02896 PEP-utilising enzyme, TIM barrel domain BS065_16915 PF01590 GAF domain BS065_16915 PF05524 PEP-utilising enzyme, N-terminal BS065_16915 PF00391 PEP-utilising enzyme, mobile domain BS065_16920 PF00141 Peroxidase BS065_16925 PF12706 Beta-lactamase superfamily domain BS065_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_16930 PF03466 LysR substrate binding domain BS065_16940 PF02798 Glutathione S-transferase, N-terminal domain BS065_16945 PF08279 HTH domain BS065_16945 PF13280 WYL domain BS065_16950 PF13419 Haloacid dehalogenase-like hydrolase BS065_16955 PF00849 RNA pseudouridylate synthase BS065_16955 PF01479 S4 domain BS065_16965 PF00575 S1 RNA binding domain BS065_16965 PF12111 Polyribonucleotide phosphorylase C terminal BS065_16965 PF10150 Ribonuclease E/G family BS065_16970 PF13193 AMP-binding enzyme C-terminal domain BS065_16970 PF00501 AMP-binding enzyme BS065_16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_16985 PF03466 LysR substrate binding domain BS065_16990 PF00106 short chain dehydrogenase BS065_16995 PF06969 HemN C-terminal domain BS065_16995 PF04055 Radical SAM superfamily BS065_17005 PF01554 MatE BS065_17010 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_17010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BS065_17010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_17015 PF08028 Acyl-CoA dehydrogenase, C-terminal domain BS065_17015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_17020 PF03109 ABC1 family BS065_17025 PF01197 Ribosomal protein L31 BS065_17035 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BS065_17055 PF03884 DNA gyrase inhibitor YacG BS065_17060 PF00753 Metallo-beta-lactamase superfamily BS065_17065 PF00762 Ferrochelatase BS065_17075 PF01177 Asp/Glu/Hydantoin racemase BS065_17090 PF01206 Sulfurtransferase TusA BS065_17095 PF03471 Transporter associated domain BS065_17095 PF00571 CBS domain BS065_17100 PF00795 Carbon-nitrogen hydrolase BS065_17105 PF01588 Putative tRNA binding domain BS065_17115 PF08334 Type II secretion system (T2SS), protein G BS065_17115 PF07963 Prokaryotic N-terminal methylation motif BS065_17120 PF00482 Type II secretion system (T2SS), protein F BS065_17125 PF00270 DEAD/DEAH box helicase BS065_17125 PF00271 Helicase conserved C-terminal domain BS065_17125 PF17764 3′ DNA-binding domain (3′BD) BS065_17125 PF18074 Primosomal protein N C-terminal domain BS065_17125 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BS065_17130 PF02254 TrkA-N domain BS065_17130 PF00999 Sodium/hydrogen exchanger family BS065_17135 PF01430 Hsp33 protein BS065_17145 PF00226 DnaJ domain BS065_17145 PF01556 DnaJ C terminal domain BS065_17155 PF01544 CorA-like Mg2+ transporter protein BS065_17160 PF03725 3' exoribonuclease family, domain 2 BS065_17160 PF00013 KH domain BS065_17160 PF00575 S1 RNA binding domain BS065_17160 PF01138 3' exoribonuclease family, domain 1 BS065_17160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BS065_17165 PF00312 Ribosomal protein S15 BS065_17175 PF13538 UvrD-like helicase C-terminal domain BS065_17180 PF13361 UvrD-like helicase C-terminal domain BS065_17180 PF12705 PD-(D/E)XK nuclease superfamily BS065_17180 PF00580 UvrD/REP helicase N-terminal domain BS065_17185 PF17946 RecC C-terminal domain BS065_17195 PF03976 Polyphosphate kinase 2 (PPK2) BS065_17205 PF01209 ubiE/COQ5 methyltransferase family BS065_17215 PF03109 ABC1 family BS065_17220 PF01494 FAD binding domain BS065_17225 PF01502 Phosphoribosyl-AMP cyclohydrolase BS065_17240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BS065_17240 PF13244 Domain of unknown function (DUF4040) BS065_17240 PF00361 Proton-conducting membrane transporter BS065_17240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BS065_17245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BS065_17250 PF00361 Proton-conducting membrane transporter BS065_17260 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BS065_17270 PF02033 Ribosome-binding factor A BS065_17275 PF11987 Translation-initiation factor 2 BS065_17275 PF00009 Elongation factor Tu GTP binding domain BS065_17275 PF08364 Bacterial translation initiation factor IF-2 associated region BS065_17275 PF04760 Translation initiation factor IF-2, N-terminal region BS065_17280 PF08529 NusA N-terminal domain BS065_17280 PF00575 S1 RNA binding domain BS065_17280 PF13184 NusA-like KH domain BS065_17285 PF17384 RimP C-terminal SH3 domain BS065_17285 PF02576 RimP N-terminal domain BS065_17305 PF03840 Preprotein translocase SecG subunit BS065_17310 PF00121 Triosephosphate isomerase BS065_17315 PF00437 Type II/IV secretion system protein BS065_17315 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BS065_17320 PF00482 Type II secretion system (T2SS), protein F BS065_17325 PF06750 Bacterial Peptidase A24 N-terminal domain BS065_17325 PF01478 Type IV leader peptidase family BS065_17330 PF01121 Dephospho-CoA kinase BS065_17340 PF08032 RNA 2'-O ribose methyltransferase substrate binding BS065_17340 PF00588 SpoU rRNA Methylase family BS065_17345 PF06865 Pyrimidine/purine nucleoside phosphorylase BS065_17355 PF02463 RecF/RecN/SMC N terminal domain BS065_17360 PF02622 Uncharacterized ACR, COG1678 BS065_17365 PF03652 Holliday junction resolvase BS065_17370 PF13533 Biotin-lipoyl like BS065_17395 PF02805 Metal binding domain of Ada BS065_17395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BS065_17395 PF12833 Helix-turn-helix domain BS065_17395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BS065_17400 PF01066 CDP-alcohol phosphatidyltransferase BS065_17410 PF08459 UvrC Helix-hairpin-helix N-terminal BS065_17410 PF02151 UvrB/uvrC motif BS065_17410 PF01541 GIY-YIG catalytic domain BS065_17430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BS065_17430 PF00378 Enoyl-CoA hydratase/isomerase BS065_17430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BS065_17435 PF02803 Thiolase, C-terminal domain BS065_17435 PF00108 Thiolase, N-terminal domain BS065_17455 PF09278 MerR, DNA binding BS065_17455 PF00376 MerR family regulatory protein BS065_17465 PF01323 DSBA-like thioredoxin domain BS065_17480 PF00183 Hsp90 protein BS065_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_17495 PF03553 Na+/H+ antiporter family BS065_17495 PF13726 Na+-H+ antiporter family BS065_17500 PF00561 alpha/beta hydrolase fold BS065_17520 PF00623 RNA polymerase Rpb1, domain 2 BS065_17520 PF04998 RNA polymerase Rpb1, domain 5 BS065_17520 PF05000 RNA polymerase Rpb1, domain 4 BS065_17520 PF04983 RNA polymerase Rpb1, domain 3 BS065_17520 PF04997 RNA polymerase Rpb1, domain 1 BS065_17525 PF04565 RNA polymerase Rpb2, domain 3 BS065_17525 PF04560 RNA polymerase Rpb2, domain 7 BS065_17525 PF10385 RNA polymerase beta subunit external 1 domain BS065_17525 PF04561 RNA polymerase Rpb2, domain 2 BS065_17525 PF00562 RNA polymerase Rpb2, domain 6 BS065_17525 PF04563 RNA polymerase beta subunit BS065_17530 PF00542 Ribosomal protein L7/L12 C-terminal domain BS065_17530 PF16320 Ribosomal protein L7/L12 dimerisation domain BS065_17535 PF00466 Ribosomal protein L10 BS065_17540 PF00687 Ribosomal protein L1p/L10e family BS065_17545 PF00298 Ribosomal protein L11, RNA binding domain BS065_17545 PF03946 Ribosomal protein L11, N-terminal domain BS065_17550 PF02357 Transcription termination factor nusG BS065_17550 PF00467 KOW motif BS065_17555 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BS065_17565 PF00009 Elongation factor Tu GTP binding domain BS065_17565 PF03144 Elongation factor Tu domain 2 BS065_17565 PF03143 Elongation factor Tu C-terminal domain BS065_17590 PF04715 Anthranilate synthase component I, N terminal region BS065_17590 PF00425 chorismate binding enzyme BS065_17595 PF13419 Haloacid dehalogenase-like hydrolase BS065_17600 PF12401 Protein of unknown function (DUF2662) BS065_17600 PF00498 FHA domain BS065_17605 PF03958 Bacterial type II/III secretion system short domain BS065_17605 PF00263 Bacterial type II and III secretion system protein BS065_17620 PF00816 H-NS histone family BS065_17645 PF03900 Porphobilinogen deaminase, C-terminal domain BS065_17645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BS065_17650 PF00072 Response regulator receiver domain BS065_17650 PF04397 LytTr DNA-binding domain BS065_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_17655 PF07694 5TMR of 5TMR-LYT BS065_17655 PF06580 Histidine kinase BS065_17660 PF14698 Argininosuccinate lyase C-terminal BS065_17660 PF00206 Lyase BS065_17665 PF04362 Bacterial Fe(2+) trafficking BS065_17670 PF01895 PhoU domain BS065_17675 PF02321 Outer membrane efflux protein BS065_17695 PF13667 ThiC-associated domain BS065_17695 PF01964 Radical SAM ThiC family BS065_17700 PF00293 NUDIX domain BS065_17705 PF00149 Calcineurin-like phosphoesterase BS065_17710 PF01258 Prokaryotic dksA/traR C4-type zinc finger BS065_17715 PF00749 tRNA synthetases class I (E and Q), catalytic domain BS065_17725 PF08245 Mur ligase middle domain BS065_17725 PF02875 Mur ligase family, glutamate ligase domain BS065_17735 PF07664 Ferrous iron transport protein B C terminus BS065_17735 PF02421 Ferrous iron transport protein B BS065_17735 PF07670 Nucleoside recognition BS065_17745 PF02899 Phage integrase, N-terminal SAM-like domain BS065_17745 PF00589 Phage integrase family BS065_17750 PF13098 Thioredoxin-like domain BS065_17750 PF10411 Disulfide bond isomerase protein N-terminus BS065_17755 PF01842 ACT domain BS065_17755 PF00742 Homoserine dehydrogenase BS065_17755 PF03447 Homoserine dehydrogenase, NAD binding domain BS065_17760 PF00291 Pyridoxal-phosphate dependent enzyme BS065_17765 PF00768 D-alanyl-D-alanine carboxypeptidase BS065_17770 PF00072 Response regulator receiver domain BS065_17770 PF00196 Bacterial regulatory proteins, luxR family BS065_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BS065_17775 PF00512 His Kinase A (phospho-acceptor) domain BS065_17780 PF00072 Response regulator receiver domain BS065_17780 PF02954 Bacterial regulatory protein, Fis family BS065_17780 PF00158 Sigma-54 interaction domain BS065_17785 PF03572 Peptidase family S41 BS065_17785 PF00595 PDZ domain BS065_17790 PF01676 Metalloenzyme superfamily BS065_17790 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BS065_17795 PF03739 Lipopolysaccharide export system permease LptF/LptG BS065_17805 PF00883 Cytosol aminopeptidase family, catalytic domain BS065_17805 PF02789 Cytosol aminopeptidase family, N-terminal domain BS065_17825 PF00677 Lumazine binding domain BS065_17835 PF01872 RibD C-terminal domain BS065_17835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BS065_17840 PF03477 ATP cone domain BS065_17845 PF00909 Ammonium Transporter Family BS065_17850 PF00543 Nitrogen regulatory protein P-II BS065_17870 PF01636 Phosphotransferase enzyme family BS065_17875 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase BS065_17900 PF00440 Bacterial regulatory proteins, tetR family BS065_17900 PF02909 Tetracyclin repressor-like, C-terminal domain BS065_17905 PF07690 Major Facilitator Superfamily BS065_17915 PF00916 Sulfate permease family BS065_17915 PF01740 STAS domain BS065_17920 PF00582 Universal stress protein family BS065_17950 PF00665 Integrase core domain BS065_17965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BS065_17965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BS065_17965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BS065_17965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BS065_17970 PF00809 Pterin binding enzyme BS065_17995 PF00665 Integrase core domain BS065_18020 PF00589 Phage integrase family BS065_18020 PF02899 Phage integrase, N-terminal SAM-like domain BS065_18050 PF00916 Sulfate permease family BS065_18050 PF01740 STAS domain BS065_18055 PF00582 Universal stress protein family BS065_18075 PF00665 Integrase core domain BS065_18090 PF00392 Bacterial regulatory proteins, gntR family BS065_18090 PF00155 Aminotransferase class I and II BS065_18100 PF00701 Dihydrodipicolinate synthetase family BS065_18120 PF00905 Penicillin binding protein transpeptidase domain BS065_18135 PF03573 outer membrane porin, OprD family BS065_18140 PF00719 Inorganic pyrophosphatase BS065_18155 PF00501 AMP-binding enzyme BS065_18155 PF13193 AMP-binding enzyme C-terminal domain BS065_18160 PF03989 DNA gyrase C-terminal domain, beta-propeller BS065_18160 PF00521 DNA gyrase/topoisomerase IV, subunit A BS065_18165 PF07690 Major Facilitator Superfamily BS065_18170 PF03458 UPF0126 domain BS065_18175 PF02810 SEC-C motif BS065_18180 PF03741 Integral membrane protein TerC family BS065_18180 PF03471 Transporter associated domain BS065_18185 PF03641 Possible lysine decarboxylase BS065_18190 PF07690 Major Facilitator Superfamily BS065_18200 PF00817 impB/mucB/samB family BS065_18200 PF11799 impB/mucB/samB family C-terminal domain BS065_18200 PF11798 IMS family HHH motif BS065_18215 PF11842 Domain of unknown function (DUF3362) BS065_18215 PF04055 Radical SAM superfamily BS065_18215 PF08497 Radical SAM N-terminal BS065_18235 PF03358 NADPH-dependent FMN reductase BS065_18245 PF00291 Pyridoxal-phosphate dependent enzyme BS065_18280 PF00440 Bacterial regulatory proteins, tetR family BS065_18305 PF01327 Polypeptide deformylase BS065_18315 PF02481 DNA recombination-mediator protein A BS065_18315 PF17782 DprA winged helix domain BS065_18320 PF01300 Telomere recombination BS065_18325 PF00892 EamA-like transporter family BS065_18330 PF00440 Bacterial regulatory proteins, tetR family BS065_18335 PF07690 Major Facilitator Superfamily BS065_18345 PF00255 Glutathione peroxidase BS065_18355 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BS065_18360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BS065_18360 PF02874 ATP synthase alpha/beta family, beta-barrel domain BS065_18365 PF00231 ATP synthase BS065_18370 PF02874 ATP synthase alpha/beta family, beta-barrel domain BS065_18370 PF00306 ATP synthase alpha/beta chain, C terminal domain BS065_18370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BS065_18375 PF00213 ATP synthase delta (OSCP) subunit BS065_18380 PF00430 ATP synthase B/B' CF(0) BS065_18385 PF00137 ATP synthase subunit C BS065_18390 PF00119 ATP synthase A chain BS065_18410 PF00005 ABC transporter BS065_18415 PF00950 ABC 3 transport family BS065_18420 PF01810 LysE type translocator BS065_18425 PF04261 Dyp-type peroxidase family BS065_18435 PF00390 Malic enzyme, N-terminal domain BS065_18435 PF03949 Malic enzyme, NAD binding domain BS065_18440 PF00750 tRNA synthetases class I (R) BS065_18440 PF03485 Arginyl tRNA synthetase N terminal domain BS065_18440 PF05746 DALR anticodon binding domain BS065_18460 PF02678 Pirin BS065_18460 PF05726 Pirin C-terminal cupin domain BS065_18470 PF03551 Transcriptional regulator PadR-like family BS065_18475 PF01909 Nucleotidyltransferase domain BS065_18475 PF13427 Domain of unknown function (DUF4111) BS065_18480 PF00117 Glutamine amidotransferase class-I BS065_18480 PF02540 NAD synthase BS065_18480 PF00958 GMP synthase C terminal domain BS065_18485 PF04286 Protein of unknown function (DUF445) BS065_18490 PF07681 DoxX BS065_18495 PF09335 SNARE associated Golgi protein BS065_18510 PF13614 AAA domain BS065_18520 PF01722 BolA-like protein BS065_18535 PF01648 4'-phosphopantetheinyl transferase superfamily BS065_18540 PF12697 Alpha/beta hydrolase family BS065_18560 PF00975 Thioesterase domain BS065_18560 PF00550 Phosphopantetheine attachment site BS065_18560 PF08242 Methyltransferase domain BS065_18560 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_18560 PF16197 Ketoacyl-synthetase C-terminal extension BS065_18560 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_18560 PF14765 Polyketide synthase dehydratase BS065_18565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_18565 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_18565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_18570 PF00501 AMP-binding enzyme BS065_18575 PF00196 Bacterial regulatory proteins, luxR family BS065_18575 PF03472 Autoinducer binding domain BS065_18585 PF00765 Autoinducer synthase BS065_18590 PF00083 Sugar (and other) transporter BS065_18590 PF07690 Major Facilitator Superfamily BS065_18595 PF00378 Enoyl-CoA hydratase/isomerase BS065_18600 PF00378 Enoyl-CoA hydratase/isomerase BS065_18605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BS065_18605 PF02770 Acyl-CoA dehydrogenase, middle domain BS065_18605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BS065_18610 PF13193 AMP-binding enzyme C-terminal domain BS065_18610 PF00501 AMP-binding enzyme BS065_18615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BS065_18615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BS065_18620 PF00171 Aldehyde dehydrogenase family BS065_18630 PF00324 Amino acid permease BS065_18635 PF00324 Amino acid permease BS065_18640 PF01042 Endoribonuclease L-PSP BS065_18645 PF00842 Alanine racemase, C-terminal domain BS065_18645 PF01168 Alanine racemase, N-terminal domain BS065_18650 PF01266 FAD dependent oxidoreductase BS065_18655 PF01037 Lrp/AsnC ligand binding domain BS065_18665 PF00593 TonB dependent receptor BS065_18665 PF07715 TonB-dependent Receptor Plug Domain BS065_18680 PF00849 RNA pseudouridylate synthase BS065_18695 PF08361 MAATS-type transcriptional repressor, C-terminal region BS065_18695 PF00440 Bacterial regulatory proteins, tetR family BS065_18705 PF00109 Beta-ketoacyl synthase, N-terminal domain BS065_18705 PF02801 Beta-ketoacyl synthase, C-terminal domain BS065_18745 PF00694 Aconitase C-terminal domain BS065_18745 PF00330 Aconitase family (aconitate hydratase) BS065_18750 PF00285 Citrate synthase, C-terminal domain BS065_18760 PF00392 Bacterial regulatory proteins, gntR family BS065_18760 PF07729 FCD domain BS065_18765 PF00155 Aminotransferase class I and II BS065_18770 PF01565 FAD binding domain BS065_18770 PF09330 D-lactate dehydrogenase, membrane binding BS065_18775 PF01070 FMN-dependent dehydrogenase BS065_18780 PF00392 Bacterial regulatory proteins, gntR family BS065_18780 PF07729 FCD domain BS065_18785 PF02652 L-lactate permease BS065_18790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BS065_18790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BS065_18790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BS065_18790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BS065_18795 PF16363 GDP-mannose 4,6 dehydratase BS065_18800 PF00342 Phosphoglucose isomerase BS065_18805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BS065_18805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BS065_18805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BS065_18810 PF00483 Nucleotidyl transferase BS065_18815 PF02397 Bacterial sugar transferase BS065_18820 PF00535 Glycosyl transferase family 2 BS065_18850 PF08666 SAF domain BS065_18850 PF03102 NeuB family BS065_18865 PF02348 Cytidylyltransferase BS065_18870 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BS065_18875 PF02719 Polysaccharide biosynthesis protein BS065_18880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BS065_18880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BS065_18880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BS065_18885 PF02563 Polysaccharide biosynthesis/export protein BS065_18885 PF10531 SLBB domain BS065_18885 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BS065_18890 PF01451 Low molecular weight phosphotyrosine protein phosphatase BS065_18895 PF13807 G-rich domain on putative tyrosine kinase BS065_18895 PF13614 AAA domain BS065_18895 PF02706 Chain length determinant protein BS065_18900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BS065_18900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BS065_18905 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BS065_18905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BS065_18910 PF03023 Lipid II flippase MurJ BS065_18915 PF01510 N-acetylmuramoyl-L-alanine amidase BS065_18920 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BS065_18920 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BS065_18935 PF01138 3' exoribonuclease family, domain 1 BS065_18935 PF03725 3' exoribonuclease family, domain 2 BS065_18940 PF00487 Fatty acid desaturase BS065_18945 PF00175 Oxidoreductase NAD-binding domain BS065_18950 PF00440 Bacterial regulatory proteins, tetR family BS065_18955 PF08360 QacR-like protein, C-terminal region BS065_18955 PF00440 Bacterial regulatory proteins, tetR family BS065_18960 PF01323 DSBA-like thioredoxin domain BS065_18970 PF13419 Haloacid dehalogenase-like hydrolase BS065_18975 PF00106 short chain dehydrogenase BS065_18990 PF00696 Amino acid kinase family BS065_18990 PF00583 Acetyltransferase (GNAT) family BS065_18995 PF09084 NMT1/THI5 like BS065_19000 PF09084 NMT1/THI5 like BS065_19005 PF00296 Luciferase-like monooxygenase BS065_19010 PF00528 Binding-protein-dependent transport system inner membrane component BS065_19015 PF00005 ABC transporter BS065_19020 PF08362 YcdC-like protein, C-terminal region BS065_19020 PF00440 Bacterial regulatory proteins, tetR family BS065_19025 PF01048 Phosphorylase superfamily BS065_19035 PF01687 Riboflavin kinase BS065_19035 PF06574 FAD synthetase BS065_19040 PF08264 Anticodon-binding domain of tRNA BS065_19040 PF06827 Zinc finger found in FPG and IleRS BS065_19040 PF00133 tRNA synthetases class I (I, L, M and V) BS065_19045 PF01252 Signal peptidase (SPase) II BS065_19050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BS065_19090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BS065_19095 PF07859 alpha/beta hydrolase fold BS065_19115 PF03466 LysR substrate binding domain BS065_19115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BS065_19120 PF01025 GrpE BS065_19125 PF00012 Hsp70 protein BS065_19145 PF13406 Transglycosylase SLT domain BS065_19150 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BS065_19150 PF02222 ATP-grasp domain BS065_19155 PF00731 AIR carboxylase BS065_19170 PF02875 Mur ligase family, glutamate ligase domain BS065_19170 PF01225 Mur ligase family, catalytic domain BS065_19170 PF08245 Mur ligase middle domain BS065_19180 PF01569 PAP2 superfamily BS065_19185 PF03741 Integral membrane protein TerC family BS065_19195 PF03738 Glutathionylspermidine synthase preATP-grasp BS065_19200 PF00355 Rieske [2Fe-2S] domain BS065_19205 PF01979 Amidohydrolase family BS065_19215 PF00156 Phosphoribosyl transferase domain BS065_19225 PF10411 Disulfide bond isomerase protein N-terminus BS065_19225 PF13098 Thioredoxin-like domain BS065_19230 PF01545 Cation efflux family BS065_19230 PF16916 Dimerisation domain of Zinc Transporter BS065_19235 PF02583 Metal-sensitive transcriptional repressor BS065_19240 PF10396 GTP-binding protein TrmE N-terminus BS065_19240 PF01926 50S ribosome-binding GTPase BS065_19240 PF12631 MnmE helical domain BS065_19245 PF02096 60Kd inner membrane protein BS065_19245 PF14849 YidC periplasmic domain BS065_19250 PF01809 Putative membrane protein insertion efficiency factor BS065_19255 PF00825 Ribonuclease P BS065_19260 PF00468 Ribosomal protein L34 BS065_19425 PF09383 NIL domain BS065_19425 PF00005 ABC transporter BS065_19445 PF03461 TRCF domain BS065_19445 PF02559 CarD-like/TRCF domain BS065_19445 PF00270 DEAD/DEAH box helicase BS065_19445 PF00271 Helicase conserved C-terminal domain BS065_19445 PF17757 UvrB interaction domain BS065_19460 PF01476 LysM domain BS065_19460 PF04650 YSIRK type signal peptide BS065_19460 PF03373 Octapeptide repeat BS065_19460 PF00746 LPXTG cell wall anchor motif BS065_19460 PF02216 B domain BS065_19535 PF08240 Alcohol dehydrogenase GroES-like domain BS065_19535 PF13823 Alcohol dehydrogenase GroES-associated BS065_19535 PF00107 Zinc-binding dehydrogenase BS065_19550 PF00665 Integrase core domain BS065_19550 PF13276 HTH-like domain BS065_19550 PF13333 Integrase core domain BS065_19555 PF02583 Metal-sensitive transcriptional repressor BS065_19560 PF00107 Zinc-binding dehydrogenase BS065_19560 PF08240 Alcohol dehydrogenase GroES-like domain BS065_19565 PF00756 Putative esterase BS065_19575 PF00465 Iron-containing alcohol dehydrogenase BS065_19585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BS065_19595 PF16925 Tetracyclin repressor-like, C-terminal domain BS065_19595 PF00440 Bacterial regulatory proteins, tetR family BS065_19605 PF00107 Zinc-binding dehydrogenase BS065_19605 PF16884 N-terminal domain of oxidoreductase BS065_19650 PF00929 Exonuclease BS065_19685 PF00268 Ribonucleotide reductase, small chain BS065_19690 PF00317 Ribonucleotide reductase, all-alpha domain BS065_19690 PF03477 ATP cone domain BS065_19690 PF02867 Ribonucleotide reductase, barrel domain BS065_19710 PF02463 RecF/RecN/SMC N terminal domain BS065_19710 PF06470 SMC proteins Flexible Hinge Domain BS065_19740 PF03161 LAGLIDADG DNA endonuclease family BS065_19740 PF00154 recA bacterial DNA recombination protein BS065_19745 PF01612 3'-5' exonuclease BS065_19745 PF00476 DNA polymerase family A BS065_19745 PF01367 5'-3' exonuclease, C-terminal SAM fold BS065_19745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BS065_19760 PF02811 PHP domain BS065_19760 PF14579 Helix-hairpin-helix motif BS065_19760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BS065_19760 PF07733 Bacterial DNA polymerase III alpha NTPase domain BS065_19770 PF07733 Bacterial DNA polymerase III alpha NTPase domain BS065_19770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BS065_19770 PF02811 PHP domain BS065_19770 PF14579 Helix-hairpin-helix motif BS065_19805 PF02899 Phage integrase, N-terminal SAM-like domain BS065_19805 PF00589 Phage integrase family BS065_19815 PF07015 VirC1 protein BS065_19830 PF00625 Guanylate kinase BS065_19860 PF08275 DNA primase catalytic core, N-terminal domain BS065_19860 PF10410 DnaB-helicase binding domain of primase BS065_19860 PF01807 CHC2 zinc finger