locus-tag	class	description
ILR57_000010	COG0592	DNA-directed DNA polymerase activity
ILR57_000020	COG0187	DNA topoisomerase II activity
ILR57_000030	COG0586	Pfam SNARE associated Golgi protein
ILR57_000035	COG0488	(ABC) transporter
ILR57_000060	COG0596	Alpha beta hydrolase
ILR57_000065	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ILR57_000070	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ILR57_000110	COG1047	Peptidyl-prolyl cis-trans
ILR57_000120	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ILR57_000125	COG0196	riboflavin kinase activity
ILR57_000135	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ILR57_000140	COG1309	transcriptional regulator
ILR57_000145	COG1116	anion transmembrane transporter activity
ILR57_000150	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ILR57_000155	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ILR57_000160	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ILR57_000165	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ILR57_000185	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_000190	COG0546	phosphoglycolate phosphatase activity
ILR57_000215	COG1017	nitric oxide dioxygenase activity
ILR57_000215	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ILR57_000250	COG3023	N-Acetylmuramoyl-L-alanine amidase
ILR57_000255	COG0728	peptidoglycan biosynthetic process
ILR57_000285	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ILR57_000305	COG0438	transferase activity, transferring glycosyl groups
ILR57_000315	COG0438	transferase activity, transferring glycosyl groups
ILR57_000320	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ILR57_000330	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ILR57_000340	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ILR57_000355	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ILR57_000360	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ILR57_000370	COG2186	Transcriptional regulator
ILR57_000380	COG0277	FAD linked oxidase domain protein
ILR57_000385	COG1448	Aminotransferase
ILR57_000395	COG1802	Transcriptional regulator
ILR57_000410	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ILR57_000430	COG1051	belongs to the nudix hydrolase family
ILR57_000460	COG0564	pseudouridine synthase activity
ILR57_000500	COG0251	oxidation-reduction process
ILR57_000505	COG1113	amino acid transport
ILR57_000510	COG1113	amino acid transport
ILR57_000530	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ILR57_000535	COG1960	acyl-CoA dehydrogenase activity
ILR57_000540	COG1024	Enoyl-CoA hydratase
ILR57_000545	COG1024	Enoyl-CoA hydratase
ILR57_000550	COG0477	Major facilitator Superfamily
ILR57_000555	COG3916	Acyl-homoserine-lactone synthase
ILR57_000575	COG1960	acyl-CoA dehydrogenase activity
ILR57_000580	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
ILR57_000580	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ILR57_000580	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ILR57_000580	COG3321	synthase
ILR57_000600	COG2267	carboxylic ester hydrolase activity
ILR57_000620	COG0271	Belongs to the BolA IbaG family
ILR57_000630	COG1192	Involved in chromosome partitioning
ILR57_000645	COG0586	Pfam SNARE associated Golgi protein
ILR57_000650	COG2259	Doxx family
ILR57_000655	COG4399	Belongs to the UPF0754 family
ILR57_000660	COG0519	Catalyzes the synthesis of GMP from XMP
ILR57_000660	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ILR57_000705	COG0281	malic enzyme
ILR57_000715	COG2837	iron assimilation
ILR57_000720	COG1280	lysine exporter protein (LysE YggA)
ILR57_000725	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ILR57_000730	COG1121	(ABC) transporter
ILR57_000795	COG0386	Belongs to the glutathione peroxidase family
ILR57_000810	COG1309	transcriptional regulator
ILR57_000815	COG0697	spore germination
ILR57_000825	COG0758	DNA mediated transformation
ILR57_000860	COG1309	transcriptional regulator
ILR57_000895	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ILR57_000905	COG0655	NAD(P)H dehydrogenase (quinone) activity
ILR57_000940	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ILR57_000945	COG3757	hydrolase, family 25
ILR57_000950	COG0477	Major facilitator Superfamily
ILR57_000960	COG1253	flavin adenine dinucleotide binding
ILR57_000970	COG2860	membrane
ILR57_000975	COG0477	Major facilitator Superfamily
ILR57_000985	COG0318	PFAM AMP-dependent synthetase and ligase
ILR57_001000	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ILR57_001015	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ILR57_001025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ILR57_001030	COG0606	chelatase, subunit chli
ILR57_001070	COG0589	response to stress
ILR57_001075	COG0659	secondary active sulfate transmembrane transporter activity
ILR57_001085	COG0606	chelatase, subunit chli
ILR57_001095	COG0347	Belongs to the P(II) protein family
ILR57_001100	COG0004	ammonium transporteR
ILR57_001110	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ILR57_001110	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ILR57_001150	COG0795	lipopolysaccharide-transporting ATPase activity
ILR57_001155	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ILR57_001160	COG0793	Belongs to the peptidase S41A family
ILR57_001175	COG2197	response regulator
ILR57_001185	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ILR57_001195	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ILR57_001200	COG4974	Belongs to the 'phage' integrase family
ILR57_001225	COG0772	Belongs to the SEDS family
ILR57_001230	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ILR57_001235	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ILR57_001240	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ILR57_001265	COG0697	spore germination
ILR57_001270	COG1538	Outer membrane efflux protein
ILR57_001290	COG3275	phosphorelay sensor kinase activity
ILR57_001300	COG0181	hydroxymethylbilane synthase activity
ILR57_001345	COG1716	ATPase activity
ILR57_001350	COG0546	phosphoglycolate phosphatase activity
ILR57_001450	COG2056	Na+-H+ antiporter family
ILR57_001465	COG0326	Molecular chaperone. Has ATPase activity
ILR57_001480	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ILR57_001540	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ILR57_001545	COG2169	Transcriptional regulator
ILR57_001545	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ILR57_001575	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ILR57_001585	COG0497	DNA recombination
ILR57_001600	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ILR57_001610	COG0237	dephospho-CoA kinase activity
ILR57_001660	COG0195	Participates in both transcription termination and antitermination
ILR57_001675	COG1320	monovalent cation:proton antiporter activity
ILR57_001680	COG2212	antiporter activity
ILR57_001685	COG1863	multisubunit Na H antiporter MnhE subunit
ILR57_001690	COG0651	ATP synthesis coupled electron transport
ILR57_001695	COG1006	Multisubunit Na H antiporter MnhC subunit
ILR57_001700	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ILR57_001700	COG2111	Na H antiporter
ILR57_001715	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ILR57_001735	COG2226	methyltransferase
ILR57_001755	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ILR57_001760	COG1074	ATP-dependent DNA helicase activity
ILR57_001765	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ILR57_001770	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ILR57_001785	COG0598	Magnesium transport protein CorA
ILR57_001790	COG0789	Transcriptional regulator
ILR57_001795	COG0484	heat shock protein binding
ILR57_001810	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ILR57_001810	COG0475	glutathione-regulated potassium exporter activity
ILR57_001815	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ILR57_001835	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ILR57_001845	COG4535	Mg2 and Co2 transporter CorC
ILR57_001850	COG0425	Belongs to the sulfur carrier protein TusA family
ILR57_001860	COG0644	oxidoreductase
ILR57_001860	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
ILR57_001870	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ILR57_001885	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ILR57_001890	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ILR57_001900	COG0493	'glutamate synthase
ILR57_001900	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
ILR57_001925	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ILR57_001940	COG0534	Mate efflux family protein
ILR57_001950	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ILR57_001955	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_001960	COG0583	DNA-binding transcription factor activity
ILR57_001975	COG0318	PFAM AMP-dependent synthetase and ligase
ILR57_001980	COG1530	ribonuclease E activity
ILR57_001990	COG0546	phosphoglycolate phosphatase activity
ILR57_001995	COG2378	regulation of single-species biofilm formation
ILR57_002000	COG0625	glutathione transferase activity
ILR57_002010	COG0583	DNA-binding transcription factor activity
ILR57_002065	COG0473	3-isopropylmalate dehydrogenase activity
ILR57_002120	COG1301	dicarboxylic acid transport
ILR57_002130	COG1560	Kdo2-lipid A biosynthetic process
ILR57_002135	COG1280	lysine exporter protein (LysE YggA)
ILR57_002140	COG0488	(ABC) transporter
ILR57_002145	COG2900	Belongs to the SlyX family
ILR57_002155	COG1733	regulation of RNA biosynthetic process
ILR57_002180	COG0210	DNA helicase
ILR57_002185	COG0724	RNA recognition motif
ILR57_002205	COG4651	solute:proton antiporter activity
ILR57_002205	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ILR57_002230	COG0788	formyltetrahydrofolate deformylase activity
ILR57_002330	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ILR57_002330	COG2813	Specifically methylates the guanine in position
ILR57_002340	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ILR57_002350	COG4774	siderophore transport
ILR57_002360	COG0740	serine-type endopeptidase activity
ILR57_002380	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
ILR57_002380	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
ILR57_002385	COG0280	phosphate acetyltransferase
ILR57_002385	COG0857	belongs to the CobB CobQ family
ILR57_002390	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ILR57_002400	COG0800	Aldolase
ILR57_002410	COG3265	gluconokinase activity
ILR57_002415	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_002425	COG2267	carboxylic ester hydrolase activity
ILR57_002440	COG0793	Belongs to the peptidase S41A family
ILR57_002475	COG1426	Protein conserved in bacteria
ILR57_002515	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ILR57_002525	COG1162	GTPase activity
ILR57_002530	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ILR57_002545	COG1538	Outer membrane efflux protein
ILR57_002550	COG0577	efflux transmembrane transporter activity
ILR57_002550	COG1136	(ABC) transporter
ILR57_002555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ILR57_002580	COG0028	Belongs to the TPP enzyme family
ILR57_002585	COG0440	acetolactate synthase activity
ILR57_002615	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ILR57_002630	COG0084	hydrolase, TatD family'
ILR57_002640	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ILR57_002650	COG0583	DNA-binding transcription factor activity
ILR57_002660	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ILR57_002730	COG1294	oxidase, subunit
ILR57_002735	COG1271	oxidase subunit
ILR57_002750	COG4774	siderophore transport
ILR57_002820	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ILR57_002830	COG2814	Major facilitator Superfamily
ILR57_002840	COG0697	spore germination
ILR57_002875	COG3622	Belongs to the hyi family
ILR57_002880	COG2084	Dehydrogenase
ILR57_002885	COG1024	Enoyl-CoA hydratase
ILR57_002890	COG5002	protein histidine kinase activity
ILR57_002890	COG0784	Response regulator, receiver
ILR57_002890	COG2205	protein histidine kinase activity
ILR57_002910	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ILR57_002920	COG3956	TIGRFAM MazG family protein
ILR57_002925	COG1555	photosystem II stabilization
ILR57_002930	COG0617	tRNA 3'-terminal CCA addition
ILR57_002935	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ILR57_002955	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ILR57_002960	COG3028	Belongs to the UPF0307 family
ILR57_002965	COG0318	PFAM AMP-dependent synthetase and ligase
ILR57_002980	COG0625	glutathione transferase activity
ILR57_002985	COG1238	metal cluster binding
ILR57_003025	COG0072	phenylalanine-tRNA ligase activity
ILR57_003055	COG0248	Ppx GppA phosphatase
ILR57_003065	COG0037	tRNA processing
ILR57_003105	COG1764	response to oxidative stress
ILR57_003110	COG1846	Transcriptional regulator
ILR57_003120	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ILR57_003180	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ILR57_003185	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ILR57_003190	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ILR57_003250	COG1214	PFAM Peptidase M22, glycoprotease
ILR57_003265	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ILR57_003275	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ILR57_003280	COG0561	phosphatase activity
ILR57_003290	COG2132	Multicopper oxidase
ILR57_003310	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ILR57_003315	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ILR57_003320	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ILR57_003350	COG1063	alcohol dehydrogenase
ILR57_003355	COG0583	DNA-binding transcription factor activity
ILR57_003360	COG1960	acyl-CoA dehydrogenase activity
ILR57_003365	COG2814	Major facilitator Superfamily
ILR57_003370	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ILR57_003380	COG1053	succinate dehydrogenase
ILR57_003385	COG0583	DNA-binding transcription factor activity
ILR57_003400	COG0583	DNA-binding transcription factor activity
ILR57_003410	COG0583	DNA-binding transcription factor activity
ILR57_003425	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_003470	COG0384	phenazine biosynthesis protein PhzF
ILR57_003490	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_003500	COG0477	Major facilitator Superfamily
ILR57_003535	COG0697	spore germination
ILR57_003540	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ILR57_003560	COG0745	RESPONSE REGULATOR receiver
ILR57_003600	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ILR57_003630	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ILR57_003635	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ILR57_003660	COG0583	DNA-binding transcription factor activity
ILR57_003680	COG0668	transmembrane transport
ILR57_003690	COG2081	HI0933 family
ILR57_003695	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ILR57_003725	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ILR57_003725	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ILR57_003735	COG0489	protein tyrosine kinase activity
ILR57_003785	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ILR57_003795	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ILR57_003810	COG0730	response to heat
ILR57_003820	COG1196	nuclear chromosome segregation
ILR57_003840	COG2223	nitrite transmembrane transporter activity
ILR57_003845	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
ILR57_003850	COG1877	trehalose-phosphatase activity
ILR57_003855	COG0596	Alpha beta hydrolase
ILR57_003855	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ILR57_003855	COG2226	methyltransferase
ILR57_003870	COG4106	trans-aconitate 2-methyltransferase activity
ILR57_003885	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ILR57_003890	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ILR57_003895	COG0009	L-threonylcarbamoyladenylate synthase
ILR57_003900	COG3101	peptidyl-lysine hydroxylation
ILR57_003905	COG1399	metal-binding, possibly nucleic acid-binding protein
ILR57_003930	COG1652	LysM domain
ILR57_003935	COG0351	phosphomethylpyrimidine kinase
ILR57_003935	COG0352	thiamine-phosphate diphosphorylase activity
ILR57_003935	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ILR57_003945	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ILR57_003975	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ILR57_004005	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
ILR57_004020	COG0358	DNA primase activity
ILR57_004030	COG0564	pseudouridine synthase activity
ILR57_004055	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ILR57_004075	COG0583	DNA-binding transcription factor activity
ILR57_004080	COG0473	3-isopropylmalate dehydrogenase activity
ILR57_004090	COG0657	acetylesterase activity
ILR57_004100	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_004120	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ILR57_004120	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ILR57_004135	COG1981	membrane
ILR57_004180	COG0456	acetyltransferase
ILR57_004190	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ILR57_004195	COG0492	ferredoxin-NADP+ reductase activity
ILR57_004200	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ILR57_004200	COG1674	ftsk spoiiie
ILR57_004205	COG1280	lysine exporter protein (LysE YggA)
ILR57_004220	COG2894	cell division
ILR57_004235	COG0204	Acyl-transferase
ILR57_004240	COG2885	chlorophyll binding
ILR57_004245	COG0210	DNA helicase
ILR57_004255	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ILR57_004270	COG0121	glutamine amidotransferase
ILR57_004290	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ILR57_004295	COG0735	belongs to the Fur family
ILR57_004320	COG0420	3'-5' exonuclease activity
ILR57_004340	COG1090	epimerase
ILR57_004355	COG2050	protein possibly involved in aromatic compounds catabolism
ILR57_004365	COG2814	Major facilitator Superfamily
ILR57_004370	COG0405	Gamma-glutamyltransferase
ILR57_004430	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ILR57_004520	COG1484	DNA-dependent DNA replication
ILR57_004595	COG3755	Protein conserved in bacteria
ILR57_004745	COG2026	Addiction module toxin, RelE StbE family
ILR57_004785	COG0592	DNA-directed DNA polymerase activity
ILR57_004855	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ILR57_004915	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
ILR57_004925	COG0477	Major facilitator Superfamily
ILR57_004930	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ILR57_004940	COG1595	DNA-templated transcription, initiation
ILR57_004995	COG0531	amino acid
ILR57_005000	COG2040	homocysteine
ILR57_005025	COG1309	transcriptional regulator
ILR57_005030	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ILR57_005035	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ILR57_005045	COG1607	acyl-coa hydrolase
ILR57_005055	COG0523	cobalamin synthesis protein
ILR57_005065	COG4681	YaeQ
ILR57_005075	COG0726	polysaccharide deacetylase
ILR57_005075	COG1649	PFAM Uncharacterised BCR, COG1649
ILR57_005080	COG1215	transferase activity, transferring glycosyl groups
ILR57_005090	COG1024	Enoyl-CoA hydratase
ILR57_005105	COG1414	Transcriptional regulator
ILR57_005125	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_005135	COG0446	pyridine nucleotide-disulphide oxidoreductase
ILR57_005140	COG2271	Major facilitator Superfamily
ILR57_005150	COG2267	carboxylic ester hydrolase activity
ILR57_005155	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_005170	COG0028	Belongs to the TPP enzyme family
ILR57_005185	COG0242	peptide deformylase activity
ILR57_005190	COG2066	Belongs to the glutaminase family
ILR57_005195	COG2207	Transcriptional regulator
ILR57_005200	COG2223	nitrite transmembrane transporter activity
ILR57_005215	COG0583	DNA-binding transcription factor activity
ILR57_005220	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_005225	COG2271	Major facilitator Superfamily
ILR57_005230	COG3959	Transketolase, thiamine diphosphate binding domain
ILR57_005235	COG3958	Transketolase
ILR57_005245	COG0306	phosphate transporter
ILR57_005265	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ILR57_005310	COG4181	ATPase activity
ILR57_005315	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ILR57_005345	COG0583	DNA-binding transcription factor activity
ILR57_005355	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ILR57_005360	COG1773	rubredoxin
ILR57_005410	COG2851	Citrate transporter
ILR57_005415	COG1253	flavin adenine dinucleotide binding
ILR57_005455	COG0804	urea catabolic process
ILR57_005465	COG0830	nickel cation binding
ILR57_005480	COG0742	ribosomal rna small subunit methyltransferase
ILR57_005485	COG0768	penicillin binding
ILR57_005510	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ILR57_005515	COG2878	Part of a membrane complex involved in electron transport
ILR57_005520	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ILR57_005530	COG3384	dioxygenase
ILR57_005550	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ILR57_005735	COG5410	chromosome segregation
ILR57_005900	COG2194	sulfuric ester hydrolase activity
ILR57_005935	COG0006	proline dipeptidase activity
ILR57_005940	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ILR57_005945	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ILR57_005965	COG1279	arginine transmembrane transporter activity
ILR57_005970	COG0583	DNA-binding transcription factor activity
ILR57_006010	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ILR57_006015	COG1388	LysM domain
ILR57_006015	COG0741	lytic transglycosylase activity
ILR57_006015	COG1388	LysM domain
ILR57_006015	COG0741	lytic transglycosylase activity
ILR57_006025	COG4174	ABC transporter (Permease)
ILR57_006030	COG4239	(ABC) transporter, permease
ILR57_006035	COG4172	Belongs to the ABC transporter superfamily
ILR57_006060	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ILR57_006070	COG2203	Gaf domain
ILR57_006070	COG4251	negative regulation of phosphorylation
ILR57_006070	COG5001	Diguanylate cyclase
ILR57_006070	COG3706	GGDEF domain
ILR57_006080	COG0446	pyridine nucleotide-disulphide oxidoreductase
ILR57_006080	COG1902	pentaerythritol trinitrate reductase activity
ILR57_006095	COG4269	membrane
ILR57_006115	COG3209	COG3209 Rhs family protein
ILR57_006155	COG1113	amino acid transport
ILR57_006165	COG0531	amino acid
ILR57_006185	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_006205	COG1113	amino acid transport
ILR57_006250	COG0697	spore germination
ILR57_006255	COG2721	sulfolactate sulfo-lyase activity
ILR57_006260	COG2271	Major facilitator Superfamily
ILR57_006265	COG4948	Mandelate Racemase Muconate Lactonizing
ILR57_006275	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_006280	COG2186	Transcriptional regulator
ILR57_006305	COG1960	acyl-CoA dehydrogenase activity
ILR57_006315	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_006320	COG1024	Enoyl-CoA hydratase
ILR57_006325	COG2814	Major facilitator Superfamily
ILR57_006345	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ILR57_006390	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
ILR57_006395	COG2072	flavoprotein involved in K transport
ILR57_006400	COG0300	oxidoreductase activity
ILR57_006410	COG1309	transcriptional regulator
ILR57_006415	COG1741	Belongs to the pirin family
ILR57_006430	COG2072	flavoprotein involved in K transport
ILR57_006440	COG2252	PERMEase
ILR57_006445	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ILR57_006450	COG3038	cytochrome b561
ILR57_006460	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ILR57_006470	COG0527	aspartate kinase activity
ILR57_006480	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ILR57_006495	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ILR57_006510	COG0667	Aldo Keto reductase
ILR57_006525	COG1765	OsmC-like protein
ILR57_006540	COG0542	response to heat
ILR57_006575	COG2885	chlorophyll binding
ILR57_006585	COG0625	glutathione transferase activity
ILR57_006745	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ILR57_006765	COG3634	alkyl hydroperoxide reductase activity
ILR57_006775	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ILR57_006785	COG0450	alkyl hydroperoxide reductase
ILR57_006790	COG1643	Atp-dependent helicase
ILR57_006805	COG2814	Major facilitator Superfamily
ILR57_006810	COG3135	benzoate transporter
ILR57_006815	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_006820	COG0543	2 iron, 2 sulfur cluster binding
ILR57_006820	COG0633	Ferredoxin
ILR57_006825	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ILR57_006830	COG4638	Rieske (2fe-2S)
ILR57_006835	COG0583	DNA-binding transcription factor activity
ILR57_006885	COG1570	exodeoxyribonuclease VII activity
ILR57_006915	COG1280	lysine exporter protein (LysE YggA)
ILR57_006920	COG1278	Cold shock
ILR57_006955	COG2814	Major facilitator Superfamily
ILR57_007045	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ILR57_007275	COG0739	heme binding
ILR57_007275	COG0741	lytic transglycosylase activity
ILR57_007275	COG1196	nuclear chromosome segregation
ILR57_007335	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
ILR57_007335	COG0517	IMP dehydrogenase activity
ILR57_007340	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ILR57_007350	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ILR57_007355	COG1137	ATPase activity
ILR57_007360	COG1538	Outer membrane efflux protein
ILR57_007390	COG4122	O-methyltransferase activity
ILR57_007400	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ILR57_007415	COG1522	sequence-specific DNA binding
ILR57_007420	COG5006	permease, DMT superfamily
ILR57_007430	COG1560	Kdo2-lipid A biosynthetic process
ILR57_007435	COG0598	Magnesium transport protein CorA
ILR57_007460	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ILR57_007465	COG1116	anion transmembrane transporter activity
ILR57_007470	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ILR57_007495	COG1250	3-hydroxyacyl-CoA dehydrogenase
ILR57_007555	COG1914	H( )-stimulated, divalent metal cation uptake system
ILR57_007575	COG4770	biotin carboxylase activity
ILR57_007580	COG0038	chloride channel
ILR57_007625	COG1309	transcriptional regulator
ILR57_007635	COG1063	alcohol dehydrogenase
ILR57_007650	COG0439	Biotin carboxylase
ILR57_007655	COG2249	NAD(P)H dehydrogenase (quinone) activity
ILR57_007660	COG1733	regulation of RNA biosynthetic process
ILR57_007670	COG0864	Transcriptional regulator
ILR57_007680	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ILR57_007685	COG1116	anion transmembrane transporter activity
ILR57_007800	COG0590	tRNA wobble adenosine to inosine editing
ILR57_007805	COG2807	transmembrane transport
ILR57_007820	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ILR57_007830	COG0789	Transcriptional regulator
ILR57_007840	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ILR57_007860	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ILR57_007885	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_007890	COG0531	amino acid
ILR57_007895	COG1760	l-serine dehydratase
ILR57_007900	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_007900	COG2030	dehydratase
ILR57_007905	COG3396	Phenylacetate-CoA oxygenase
ILR57_007910	COG3460	Phenylacetate-CoA oxygenase
ILR57_007915	COG3396	Phenylacetate-CoA oxygenase
ILR57_007920	COG2151	metal-sulfur cluster biosynthetic enzyme
ILR57_007925	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ILR57_007930	COG1024	Enoyl-CoA hydratase
ILR57_007935	COG1024	Enoyl-CoA hydratase
ILR57_007940	COG1250	3-hydroxyacyl-CoA dehydrogenase
ILR57_007945	COG0183	Belongs to the thiolase family
ILR57_007950	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
ILR57_007955	COG3327	negative regulation of DNA-templated transcription, initiation
ILR57_007965	COG2050	protein possibly involved in aromatic compounds catabolism
ILR57_007980	COG0406	alpha-ribazole phosphatase activity
ILR57_008005	COG0753	catalase activity
ILR57_008010	COG3038	cytochrome b561
ILR57_008030	COG2267	carboxylic ester hydrolase activity
ILR57_008035	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_008040	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ILR57_008045	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_008055	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ILR57_008065	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_008070	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ILR57_008075	COG0583	DNA-binding transcription factor activity
ILR57_008085	COG1414	Transcriptional regulator
ILR57_008090	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ILR57_008105	COG1840	ABC-type Fe3 transport system, periplasmic component
ILR57_008110	COG3842	ATPase activity
ILR57_008130	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ILR57_008150	COG0583	DNA-binding transcription factor activity
ILR57_008160	COG4770	biotin carboxylase activity
ILR57_008165	COG1024	Enoyl-CoA hydratase
ILR57_008170	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ILR57_008175	COG1960	acyl-CoA dehydrogenase activity
ILR57_008180	COG1309	transcriptional regulator
ILR57_008185	COG0318	PFAM AMP-dependent synthetase and ligase
ILR57_008205	COG0583	DNA-binding transcription factor activity
ILR57_008255	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_008275	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ILR57_008295	COG0784	Response regulator, receiver
ILR57_008295	COG2205	protein histidine kinase activity
ILR57_008315	COG0765	amino acid transport
ILR57_008320	COG0765	amino acid transport
ILR57_008325	COG1126	abc transporter atp-binding protein
ILR57_008330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ILR57_008335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ILR57_008350	COG1280	lysine exporter protein (LysE YggA)
ILR57_008355	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ILR57_008360	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ILR57_008365	COG1045	serine acetyltransferase
ILR57_008380	COG0583	DNA-binding transcription factor activity
ILR57_008385	COG0625	glutathione transferase activity
ILR57_008390	COG0625	glutathione transferase activity
ILR57_008395	COG0583	DNA-binding transcription factor activity
ILR57_008405	COG1346	cytolysis
ILR57_008425	COG2814	Major facilitator Superfamily
ILR57_008435	COG0583	DNA-binding transcription factor activity
ILR57_008445	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
ILR57_008450	COG3052	prosthetic group binding
ILR57_008470	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ILR57_008490	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ILR57_008505	COG1271	oxidase subunit
ILR57_008525	COG0477	Major facilitator Superfamily
ILR57_008535	COG4521	taurine ABC transporter
ILR57_008540	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ILR57_008545	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ILR57_008550	COG2175	clavaminate synthase activity
ILR57_008560	COG1953	Uracil, thiamine, allantoin
ILR57_008570	COG0583	DNA-binding transcription factor activity
ILR57_008580	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
ILR57_008595	COG0640	Transcriptional regulator
ILR57_008600	COG0798	PFAM Bile acid sodium symporter
ILR57_008605	COG0583	DNA-binding transcription factor activity
ILR57_008620	COG3634	alkyl hydroperoxide reductase activity
ILR57_008655	COG1301	dicarboxylic acid transport
ILR57_008660	COG0436	Aminotransferase
ILR57_008670	COG0386	Belongs to the glutathione peroxidase family
ILR57_008710	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ILR57_008735	COG0012	GTP binding
ILR57_008740	COG2011	ABC-type metal ion transport system permease component
ILR57_008745	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ILR57_008755	COG1464	Belongs to the NlpA lipoprotein family
ILR57_008785	COG0765	amino acid transport
ILR57_008790	COG0765	amino acid transport
ILR57_008795	COG1126	abc transporter atp-binding protein
ILR57_008805	COG1522	sequence-specific DNA binding
ILR57_008820	COG1309	transcriptional regulator
ILR57_008840	COG0583	DNA-binding transcription factor activity
ILR57_008850	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ILR57_008860	COG0697	spore germination
ILR57_008885	COG3121	Chaperone
ILR57_008890	COG3539	Fimbrial protein
ILR57_008915	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ILR57_008915	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ILR57_008960	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ILR57_008970	COG2353	YceI-like domain
ILR57_008980	COG3698	Phosphodiester glycosidase
ILR57_008995	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
ILR57_009000	COG0506	proline dehydrogenase activity
ILR57_009000	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ILR57_009000	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ILR57_009010	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ILR57_009015	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ILR57_009035	COG1132	(ABC) transporter
ILR57_009040	COG3122	Protein conserved in bacteria
ILR57_009045	COG3619	membrane
ILR57_009055	COG0640	Transcriptional regulator
ILR57_009065	COG2850	peptidyl-arginine hydroxylation
ILR57_009070	COG0424	maF-like protein
ILR57_009090	COG0191	fructose-bisphosphate aldolase activity
ILR57_009095	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ILR57_009110	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ILR57_009120	COG1192	Involved in chromosome partitioning
ILR57_009125	COG1475	DNA binding
ILR57_009130	COG0811	peptide transport
ILR57_009140	COG1132	(ABC) transporter
ILR57_009145	COG1663	tetraacyldisaccharide 4'-kinase activity
ILR57_009165	COG0084	hydrolase, TatD family'
ILR57_009230	COG0776	regulation of translation
ILR57_009260	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ILR57_009265	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ILR57_009300	COG4166	transmembrane transport
ILR57_009310	COG0339	signal peptide processing
ILR57_009320	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ILR57_009355	COG0702	epimerase
ILR57_009360	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ILR57_009380	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ILR57_009410	COG0316	Belongs to the HesB IscA family
ILR57_009415	COG0822	iron-sulfur transferase activity
ILR57_009440	COG0776	regulation of translation
ILR57_009445	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ILR57_009450	COG2207	Transcriptional regulator
ILR57_009455	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ILR57_009460	COG1960	acyl-CoA dehydrogenase activity
ILR57_009465	COG1960	acyl-CoA dehydrogenase activity
ILR57_009480	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ILR57_009495	COG2814	Major facilitator Superfamily
ILR57_009500	COG4264	IucA IucC family
ILR57_009505	COG4264	IucA IucC family
ILR57_009515	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ILR57_009545	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ILR57_009560	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
ILR57_009565	COG0406	alpha-ribazole phosphatase activity
ILR57_009580	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ILR57_009585	COG0730	response to heat
ILR57_009605	COG4773	Receptor
ILR57_009610	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ILR57_009625	COG1131	(ABC) transporter
ILR57_009630	COG0842	Transport permease protein
ILR57_009635	COG0842	Transport permease protein
ILR57_009690	COG2226	methyltransferase
ILR57_009715	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ILR57_009750	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ILR57_009760	COG0133	tryptophan synthase activity
ILR57_009775	COG3706	GGDEF domain
ILR57_009790	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ILR57_009795	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ILR57_009800	COG0022	dehydrogenase e1 component
ILR57_009805	COG0508	dehydrogenase complex catalyzes the overall conversion of
ILR57_009810	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ILR57_009820	COG1063	alcohol dehydrogenase
ILR57_009825	COG3781	membrane
ILR57_009835	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ILR57_009835	COG3453	Protein conserved in bacteria
ILR57_009845	COG0730	response to heat
ILR57_009860	COG3708	Transcriptional regulator
ILR57_009860	COG2207	Transcriptional regulator
ILR57_009865	COG1733	regulation of RNA biosynthetic process
ILR57_009870	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ILR57_009880	COG2188	Transcriptional regulator
ILR57_009895	COG4521	taurine ABC transporter
ILR57_009900	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ILR57_009920	COG0477	Major facilitator Superfamily
ILR57_009930	COG1027	Aspartate ammonia-lyase
ILR57_009945	COG0583	DNA-binding transcription factor activity
ILR57_009950	COG0583	DNA-binding transcription factor activity
ILR57_009955	COG0183	Belongs to the thiolase family
ILR57_009960	COG2031	fatty acid transporter
ILR57_009975	COG0583	DNA-binding transcription factor activity
ILR57_009985	COG2610	gluconate transmembrane transporter activity
ILR57_009990	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_009995	COG2207	Transcriptional regulator
ILR57_010010	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_010020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_010035	COG0543	2 iron, 2 sulfur cluster binding
ILR57_010035	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ILR57_010040	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ILR57_010045	COG4638	Rieske (2fe-2S)
ILR57_010055	COG0725	ABC transporter, periplasmic molybdate-binding protein
ILR57_010060	COG4149	molybdate abc transporter
ILR57_010065	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ILR57_010070	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_010075	COG3433	isochorismatase activity
ILR57_010075	COG1535	isochorismatase
ILR57_010135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ILR57_010150	COG0753	catalase activity
ILR57_010160	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ILR57_010185	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ILR57_010190	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ILR57_010195	COG0745	RESPONSE REGULATOR receiver
ILR57_010200	COG2205	protein histidine kinase activity
ILR57_010210	COG2207	Transcriptional regulator
ILR57_010220	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_010245	COG3320	Male sterility
ILR57_010245	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ILR57_010250	COG2814	Major facilitator Superfamily
ILR57_010275	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ILR57_010325	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ILR57_010345	COG1120	ATPase activity
ILR57_010350	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ILR57_010360	COG1064	alcohol dehydrogenase
ILR57_010375	COG2207	Transcriptional regulator
ILR57_010380	COG2084	Dehydrogenase
ILR57_010390	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ILR57_010395	COG0583	DNA-binding transcription factor activity
ILR57_010405	COG0129	dihydroxy-acid dehydratase activity
ILR57_010410	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_010415	COG1846	Transcriptional regulator
ILR57_010420	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_010425	COG1960	acyl-CoA dehydrogenase activity
ILR57_010430	COG0477	Major facilitator Superfamily
ILR57_010445	COG3971	2-oxopent-4-enoate hydratase activity
ILR57_010455	COG3384	dioxygenase
ILR57_010460	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_010470	COG0179	Fumarylacetoacetate (FAA) hydrolase
ILR57_010480	COG2814	Major facilitator Superfamily
ILR57_010485	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ILR57_010500	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_010520	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ILR57_010540	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ILR57_010575	COG0583	DNA-binding transcription factor activity
ILR57_010590	COG2188	Transcriptional regulator
ILR57_010645	COG1473	amidohydrolase
ILR57_010655	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ILR57_010655	COG0475	glutathione-regulated potassium exporter activity
ILR57_010665	COG0583	DNA-binding transcription factor activity
ILR57_010670	COG1335	isochorismatase
ILR57_010680	COG1309	transcriptional regulator
ILR57_010715	COG1902	pentaerythritol trinitrate reductase activity
ILR57_010715	COG0446	pyridine nucleotide-disulphide oxidoreductase
ILR57_010720	COG1846	Transcriptional regulator
ILR57_010745	COG0753	catalase activity
ILR57_010760	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_010775	COG3162	membrane
ILR57_010785	COG3829	transcription factor binding
ILR57_010790	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_010795	COG1960	acyl-CoA dehydrogenase activity
ILR57_010810	COG3231	kanamycin kinase activity
ILR57_010815	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_010835	COG2186	Transcriptional regulator
ILR57_010845	COG0583	DNA-binding transcription factor activity
ILR57_010850	COG4948	Mandelate Racemase Muconate Lactonizing
ILR57_010855	COG4829	muconolactone delta-isomerase
ILR57_010865	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ILR57_010870	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ILR57_010875	COG0183	Belongs to the thiolase family
ILR57_010880	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ILR57_010890	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_010900	COG3733	amine oxidase
ILR57_010910	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_010920	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_010930	COG4638	Rieske (2fe-2S)
ILR57_010950	COG0154	amidase activity
ILR57_010960	COG2814	Major facilitator Superfamily
ILR57_010985	COG1960	acyl-CoA dehydrogenase activity
ILR57_010990	COG0583	DNA-binding transcription factor activity
ILR57_010995	COG1414	Transcriptional regulator
ILR57_011010	COG2391	methyltransferase activity
ILR57_011020	COG4993	Dehydrogenase
ILR57_011025	COG3659	wide pore channel activity
ILR57_011030	COG3420	alginic acid biosynthetic process
ILR57_011035	COG0710	3-dehydroquinate dehydratase activity
ILR57_011040	COG3485	protocatechuate 3,4-dioxygenase
ILR57_011045	COG3485	protocatechuate 3,4-dioxygenase
ILR57_011050	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ILR57_011055	COG2271	Major facilitator Superfamily
ILR57_011060	COG0596	Alpha beta hydrolase
ILR57_011065	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ILR57_011070	COG0183	Belongs to the thiolase family
ILR57_011075	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ILR57_011080	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ILR57_011090	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ILR57_011095	COG2323	membrane
ILR57_011140	COG0446	pyridine nucleotide-disulphide oxidoreductase
ILR57_011140	COG1902	pentaerythritol trinitrate reductase activity
ILR57_011155	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ILR57_011165	COG0542	response to heat
ILR57_011170	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ILR57_011200	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ILR57_011205	COG0569	domain protein
ILR57_011210	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ILR57_011225	COG4774	siderophore transport
ILR57_011230	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ILR57_011240	COG1585	Membrane protein implicated in regulation of membrane protease activity
ILR57_011255	COG1294	oxidase, subunit
ILR57_011260	COG4890	Cyd operon protein YbgT
ILR57_011270	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
ILR57_011280	COG0552	protein localization to endoplasmic reticulum
ILR57_011305	COG0516	GMP reductase activity
ILR57_011305	COG0517	IMP dehydrogenase activity
ILR57_011310	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ILR57_011315	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ILR57_011325	COG0583	DNA-binding transcription factor activity
ILR57_011330	COG0024	Methionine aminopeptidase
ILR57_011360	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ILR57_011360	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ILR57_011365	COG1105	Belongs to the carbohydrate kinase PfkB family
ILR57_011370	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
ILR57_011370	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ILR57_011370	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ILR57_011390	COG5001	Diguanylate cyclase
ILR57_011390	COG3300	MHYT domain
ILR57_011405	COG2135	peptidase activity
ILR57_011410	COG0659	secondary active sulfate transmembrane transporter activity
ILR57_011425	COG1113	amino acid transport
ILR57_011435	COG1522	sequence-specific DNA binding
ILR57_011460	COG1011	Hydrolase
ILR57_011465	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ILR57_011475	COG2137	regulation of response to DNA damage stimulus
ILR57_011490	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ILR57_011510	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ILR57_011525	COG0575	Belongs to the CDS family
ILR57_011530	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ILR57_011550	COG3852	Histidine kinase
ILR57_011555	COG2204	response regulator
ILR57_011615	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ILR57_011620	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
ILR57_011640	COG0697	spore germination
ILR57_011645	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ILR57_011660	COG0315	cyclic pyranopterin monophosphate synthase activity
ILR57_011660	COG0521	Mo-molybdopterin cofactor biosynthetic process
ILR57_011680	COG0243	molybdopterin cofactor binding
ILR57_011690	COG0243	molybdopterin cofactor binding
ILR57_011695	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ILR57_011700	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ILR57_011700	COG2146	nitrite reductase [NAD(P)H] activity
ILR57_011710	COG0745	RESPONSE REGULATOR receiver
ILR57_011715	COG1116	anion transmembrane transporter activity
ILR57_011715	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ILR57_011735	COG0511	ligase activity, forming carbon-carbon bonds
ILR57_011750	COG2814	Major facilitator Superfamily
ILR57_011770	COG3179	chitinase
ILR57_011950	COG5410	chromosome segregation
ILR57_011990	COG3617	BRO family, N-terminal domain
ILR57_012150	COG0069	glutamate synthase activity
ILR57_012170	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ILR57_012180	COG1454	alcohol dehydrogenase
ILR57_012185	COG0824	Thioesterase
ILR57_012200	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ILR57_012215	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
ILR57_012220	COG2030	dehydratase
ILR57_012230	COG0183	Belongs to the thiolase family
ILR57_012240	COG0583	DNA-binding transcription factor activity
ILR57_012245	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ILR57_012255	COG1522	sequence-specific DNA binding
ILR57_012260	COG3135	benzoate transporter
ILR57_012270	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ILR57_012295	COG0589	response to stress
ILR57_012300	COG0488	(ABC) transporter
ILR57_012320	COG4773	Receptor
ILR57_012350	COG0668	transmembrane transport
ILR57_012360	COG1309	transcriptional regulator
ILR57_012375	COG1605	Chorismate mutase
ILR57_012395	COG0308	aminopeptidase N
ILR57_012415	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
ILR57_012425	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ILR57_012430	COG1454	alcohol dehydrogenase
ILR57_012450	COG0531	amino acid
ILR57_012455	COG4303	Ethanolamine ammonia lyase large subunit
ILR57_012460	COG4302	ethanolamine ammonia-lyase activity
ILR57_012465	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ILR57_012465	COG0519	Catalyzes the synthesis of GMP from XMP
ILR57_012470	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ILR57_012495	COG0697	spore germination
ILR57_012500	COG1923	regulation of RNA biosynthetic process
ILR57_012510	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ILR57_012515	COG0802	atpase or kinase
ILR57_012535	COG1187	pseudouridine synthase activity
ILR57_012550	COG0583	DNA-binding transcription factor activity
ILR57_012565	COG2814	Major facilitator Superfamily
ILR57_012570	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ILR57_012595	COG0729	surface antigen
ILR57_012615	COG0174	glutamine synthetase
ILR57_012620	COG0745	RESPONSE REGULATOR receiver
ILR57_012625	COG2205	protein histidine kinase activity
ILR57_012635	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ILR57_012640	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ILR57_012650	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
ILR57_012665	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_012670	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ILR57_012675	COG1960	acyl-CoA dehydrogenase activity
ILR57_012690	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ILR57_012695	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ILR57_012715	COG0583	DNA-binding transcription factor activity
ILR57_012730	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ILR57_012740	COG3658	cytochrome
ILR57_012745	COG1215	transferase activity, transferring glycosyl groups
ILR57_012750	COG0726	polysaccharide deacetylase
ILR57_012750	COG1649	PFAM Uncharacterised BCR, COG1649
ILR57_012775	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ILR57_012780	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ILR57_012790	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ILR57_012815	COG0305	Participates in initiation and elongation during chromosome replication
ILR57_012820	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ILR57_012830	COG1305	Transglutaminase-like
ILR57_012840	COG2308	Evidence 4 Homologs of previously reported genes of
ILR57_012870	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ILR57_012875	COG0138	bifunctional purine biosynthesis protein purh
ILR57_012880	COG0151	Belongs to the GarS family
ILR57_012885	COG1464	Belongs to the NlpA lipoprotein family
ILR57_012890	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ILR57_012895	COG2011	ABC-type metal ion transport system permease component
ILR57_012900	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ILR57_012910	COG1301	dicarboxylic acid transport
ILR57_012940	COG1794	racemase activity, acting on amino acids and derivatives
ILR57_012950	COG3008	intermembrane lipid transfer
ILR57_012950	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ILR57_012955	COG2995	paraquat-inducible protein a
ILR57_012985	COG0477	Major facilitator Superfamily
ILR57_012995	COG2186	Transcriptional regulator
ILR57_013005	COG0786	glutamate:sodium symporter activity
ILR57_013010	COG3243	poly(R)-hydroxyalkanoic acid synthase
ILR57_013035	COG3111	PFAM Bacterial OB fold (BOF) protein
ILR57_013105	COG0515	serine threonine protein kinase
ILR57_013105	COG2815	serine threonine protein kinase
ILR57_013135	COG1610	YqeY-like protein
ILR57_013140	COG4783	chaperone-mediated protein folding
ILR57_013165	COG1286	toxin biosynthetic process
ILR57_013195	COG0778	Nitroreductase
ILR57_013205	COG0513	Belongs to the DEAD box helicase family
ILR57_013225	COG2363	Small membrane protein
ILR57_013255	COG4650	regulator
ILR57_013260	COG1234	tRNA 3'-trailer cleavage
ILR57_013265	COG1690	Belongs to the RtcB family
ILR57_013285	COG2195	Cleaves the N-terminal amino acid of tripeptides
ILR57_013295	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ILR57_013305	COG2819	hydrolase of the alpha beta superfamily
ILR57_013310	COG1960	acyl-CoA dehydrogenase activity
ILR57_013315	COG1301	dicarboxylic acid transport
ILR57_013325	COG3139	Protein of unknown function (DUF1315)
ILR57_013330	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ILR57_013335	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ILR57_013345	COG0494	nUDIX hydrolase
ILR57_013355	COG0642	Histidine kinase
ILR57_013370	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ILR57_013380	COG1720	tRNA m6t6A37 methyltransferase activity
ILR57_013395	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ILR57_013400	COG0826	peptidase U32
ILR57_013405	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ILR57_013415	COG4598	ABC transporter
ILR57_013420	COG4160	amino acid transport
ILR57_013425	COG4215	(ABC) transporter
ILR57_013440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ILR57_013480	COG1131	(ABC) transporter
ILR57_013485	COG0842	Transport permease protein
ILR57_013500	COG0772	Belongs to the SEDS family
ILR57_013505	COG2951	lytic endotransglycosylase activity
ILR57_013530	COG2207	Transcriptional regulator
ILR57_013545	COG0052	Belongs to the universal ribosomal protein uS2 family
ILR57_013550	COG0024	Methionine aminopeptidase
ILR57_013560	COG2223	nitrite transmembrane transporter activity
ILR57_013570	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ILR57_013575	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ILR57_013580	COG1960	acyl-CoA dehydrogenase activity
ILR57_013595	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ILR57_013600	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ILR57_013605	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ILR57_013625	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ILR57_013630	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ILR57_013635	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ILR57_013670	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ILR57_013680	COG0174	glutamine synthetase
ILR57_013695	COG0512	Glutamine amidotransferase of anthranilate synthase
ILR57_013700	COG0308	aminopeptidase N
ILR57_013730	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ILR57_013740	COG0302	gtp cyclohydrolase
ILR57_013760	COG3739	integral membrane protein
ILR57_013780	COG2977	Belongs to the P-Pant transferase superfamily
ILR57_013785	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
ILR57_013790	COG1132	(ABC) transporter
ILR57_013795	COG1132	(ABC) transporter
ILR57_013810	COG3433	isochorismatase activity
ILR57_013810	COG1535	isochorismatase
ILR57_013815	COG1021	2,3-dihydroxybenzoate-AMP ligase
ILR57_013820	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ILR57_013830	COG4774	siderophore transport
ILR57_013835	COG4607	ABC-type enterochelin transport system periplasmic component
ILR57_013840	COG4604	ABC transporter, ATP-binding protein
ILR57_013845	COG4605	iron ion homeostasis
ILR57_013850	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ILR57_013855	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ILR57_013870	COG2964	Protein conserved in bacteria
ILR57_013880	COG1741	Belongs to the pirin family
ILR57_013910	COG2130	NADP-dependent
ILR57_013920	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ILR57_013930	COG0596	Alpha beta hydrolase
ILR57_013945	COG0583	DNA-binding transcription factor activity
ILR57_013950	COG1335	isochorismatase
ILR57_013990	COG2879	small protein
ILR57_013995	COG1966	Carbon starvation protein
ILR57_014015	COG4943	cyclic-guanylate-specific phosphodiesterase activity
ILR57_014040	COG1067	ATP-dependent peptidase activity
ILR57_014045	COG0583	DNA-binding transcription factor activity
ILR57_014070	COG1686	Belongs to the peptidase S11 family
ILR57_014075	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ILR57_014110	COG0616	signal peptide processing
ILR57_014115	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ILR57_014125	COG0573	inorganic phosphate transmembrane transporter activity
ILR57_014130	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ILR57_014135	COG1113	amino acid transport
ILR57_014140	COG3961	Belongs to the TPP enzyme family
ILR57_014145	COG1522	sequence-specific DNA binding
ILR57_014155	COG0076	glutamate decarboxylase activity
ILR57_014160	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ILR57_014170	COG1309	transcriptional regulator
ILR57_014185	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ILR57_014220	COG0352	thiamine-phosphate diphosphorylase activity
ILR57_014245	COG0612	Peptidase, M16
ILR57_014255	COG1823	symporter activity
ILR57_014260	COG0583	DNA-binding transcription factor activity
ILR57_014265	COG0477	Major facilitator Superfamily
ILR57_014290	COG1187	pseudouridine synthase activity
ILR57_014305	COG1686	Belongs to the peptidase S11 family
ILR57_014310	COG1252	NADH dehydrogenase
ILR57_014325	COG2070	2-Nitropropane dioxygenase
ILR57_014380	COG0556	nucleotide-excision repair
ILR57_014400	COG0436	Aminotransferase
ILR57_014410	COG0443	Heat shock 70 kDa protein
ILR57_014440	COG4221	oxidoreductase activity
ILR57_014450	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ILR57_014455	COG1381	Involved in DNA repair and RecF pathway recombination
ILR57_014465	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ILR57_014480	COG0681	Belongs to the peptidase S26 family
ILR57_014490	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ILR57_014500	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ILR57_014520	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ILR57_014525	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ILR57_014530	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ILR57_014540	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ILR57_014545	COG4208	sulfate ABC transporter
ILR57_014550	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ILR57_014555	COG0583	DNA-binding transcription factor activity
ILR57_014560	COG4625	pathogenesis
ILR57_014575	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ILR57_014590	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ILR57_014600	COG1051	belongs to the nudix hydrolase family
ILR57_014600	COG1056	cytidyltransferase-related domain
ILR57_014605	COG1024	Enoyl-CoA hydratase
ILR57_014615	COG2814	Major facilitator Superfamily
ILR57_014620	COG0047	phosphoribosylformylglycinamidine synthase activity
ILR57_014620	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ILR57_014640	COG1473	amidohydrolase
ILR57_014645	COG0824	Thioesterase
ILR57_014665	COG0823	Involved in the tonB-independent uptake of proteins
ILR57_014685	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ILR57_014720	COG0628	permease
ILR57_014730	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ILR57_014735	COG0596	Alpha beta hydrolase
ILR57_014740	COG0616	signal peptide processing
ILR57_014740	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ILR57_014750	COG0658	competence protein
ILR57_014750	COG2333	competence protein COMEC
ILR57_014755	COG1136	(ABC) transporter
ILR57_014760	COG4591	ABC-type transport system involved in lipoprotein release permease component
ILR57_014795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ILR57_014815	COG0463	Glycosyl transferase, family 2
ILR57_014845	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ILR57_014850	COG1280	lysine exporter protein (LysE YggA)
ILR57_014855	COG2267	carboxylic ester hydrolase activity
ILR57_014865	COG0019	diaminopimelate decarboxylase activity
ILR57_014875	COG1113	amino acid transport
ILR57_014890	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ILR57_014900	COG3339	Conserved Protein
ILR57_014905	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ILR57_014910	COG0243	molybdopterin cofactor binding
ILR57_014915	COG1929	Belongs to the glycerate kinase type-1 family
ILR57_014930	COG0778	Nitroreductase
ILR57_014950	COG3811	Belongs to the UPF0386 family
ILR57_014975	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ILR57_014990	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ILR57_015010	COG0741	lytic transglycosylase activity
ILR57_015030	COG0584	glycerophosphoryl diester phosphodiesterase
ILR57_015035	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ILR57_015060	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ILR57_015065	COG1597	lipid kinase activity
ILR57_015080	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ILR57_015085	COG0477	Major facilitator Superfamily
ILR57_015135	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ILR57_015140	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ILR57_015165	COG0505	Belongs to the CarA family
ILR57_015185	COG0589	response to stress
ILR57_015200	COG2843	Capsule synthesis protein
ILR57_015220	COG2321	neutral zinc metallopeptidase
ILR57_015225	COG2354	Protein conserved in bacteria
ILR57_015245	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ILR57_015270	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ILR57_015275	COG1053	succinate dehydrogenase
ILR57_015280	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ILR57_015285	COG2009	succinate dehydrogenase
ILR57_015320	COG2921	Belongs to the UPF0250 family
ILR57_015325	COG0321	lipoyl(octanoyl) transferase activity
ILR57_015340	COG0531	amino acid
ILR57_015350	COG1733	regulation of RNA biosynthetic process
ILR57_015355	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ILR57_015360	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ILR57_015360	COG1648	precorrin-2 dehydrogenase activity
ILR57_015375	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ILR57_015405	COG0671	phosphoesterase, PA-phosphatase related
ILR57_015410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ILR57_015420	COG1538	Outer membrane efflux protein
ILR57_015425	COG0393	Putative heavy-metal-binding
ILR57_015430	COG0393	Putative heavy-metal-binding
ILR57_015440	COG1028	Short-chain dehydrogenase reductase Sdr
ILR57_015450	COG0525	valine-tRNA ligase activity
ILR57_015470	COG0583	DNA-binding transcription factor activity
ILR57_015475	COG0004	ammonium transporteR
ILR57_015495	COG0745	RESPONSE REGULATOR receiver
ILR57_015500	COG2194	sulfuric ester hydrolase activity
ILR57_015520	COG1752	Esterase of the alpha-beta hydrolase superfamily
ILR57_015535	COG2315	Protein conserved in bacteria
ILR57_015540	COG0142	geranyltranstransferase activity
ILR57_015545	COG2828	Protein conserved in bacteria
ILR57_015550	COG1113	amino acid transport
ILR57_015595	COG2207	Transcriptional regulator
ILR57_015620	COG2249	NAD(P)H dehydrogenase (quinone) activity
ILR57_015630	COG0560	Phosphoserine phosphatase
ILR57_015640	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ILR57_015650	COG1530	ribonuclease E activity
ILR57_015655	COG0424	maF-like protein
ILR57_015660	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
ILR57_015665	COG1792	Involved in formation and maintenance of cell shape
ILR57_015670	COG1077	Cell shape determining protein MreB Mrl
ILR57_015675	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ILR57_015685	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ILR57_015730	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
ILR57_015735	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ILR57_015740	COG1752	Esterase of the alpha-beta hydrolase superfamily
ILR57_015745	COG1115	amino acid carrier protein
ILR57_015765	COG2814	Major facilitator Superfamily
ILR57_015770	COG1289	transmembrane transporter activity
ILR57_015780	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
ILR57_015820	COG1376	ErfK ybiS ycfS ynhG family protein
ILR57_015825	COG2832	Protein of unknown function (DUF454)
ILR57_015835	COG5510	response to toxic substance
ILR57_015860	COG0840	transmembrane signaling receptor activity
ILR57_015900	COG3422	double-strand break repair
ILR57_015905	COG2824	Alkylphosphonate utilization operon protein PhnA
ILR57_015910	COG3189	MarR family transcriptional regulator
ILR57_015920	COG0354	folic acid binding
ILR57_015925	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ILR57_015935	COG0679	Auxin Efflux Carrier
ILR57_015940	COG1902	pentaerythritol trinitrate reductase activity
ILR57_015945	COG4772	TonB-dependent receptor
ILR57_015950	COG2094	Belongs to the DNA glycosylase MPG family
ILR57_015975	COG1217	gtp-binding protein TYPA
ILR57_015980	COG2233	PERMEase
ILR57_015990	COG0833	amino acid
ILR57_015995	COG1690	Belongs to the RtcB family
ILR57_016005	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
ILR57_016005	COG2885	chlorophyll binding
ILR57_016015	COG0183	Belongs to the thiolase family
ILR57_016035	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ILR57_016055	COG2207	Transcriptional regulator
ILR57_016060	COG0183	Belongs to the thiolase family
ILR57_016090	COG1272	protein, Hemolysin III
ILR57_016095	COG0477	Major facilitator Superfamily
ILR57_016110	COG0450	alkyl hydroperoxide reductase
ILR57_016130	COG0285	dihydrofolate synthase activity
ILR57_016180	COG2096	Adenosyltransferase
ILR57_016185	COG0584	glycerophosphoryl diester phosphodiesterase
ILR57_016200	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ILR57_016205	COG0745	RESPONSE REGULATOR receiver
ILR57_016210	COG2205	protein histidine kinase activity
ILR57_016220	COG1960	acyl-CoA dehydrogenase activity
ILR57_016225	COG1960	acyl-CoA dehydrogenase activity
ILR57_016290	COG0438	transferase activity, transferring glycosyl groups
ILR57_016295	COG0463	Glycosyl transferase, family 2
ILR57_016300	COG0726	polysaccharide deacetylase
ILR57_016320	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
ILR57_016325	COG2205	protein histidine kinase activity
ILR57_016355	COG1862	Preprotein translocase
ILR57_016365	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ILR57_016370	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ILR57_016380	COG3781	membrane
ILR57_016385	COG0613	PHP domain protein
ILR57_016395	COG2350	Protein conserved in bacteria
ILR57_016425	COG1607	acyl-coa hydrolase
ILR57_016485	COG2199	diguanylate cyclase activity
ILR57_016495	COG1408	metallophosphoesterase
ILR57_016500	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ILR57_016510	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ILR57_016530	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ILR57_016535	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ILR57_016540	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ILR57_016550	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ILR57_016560	COG2969	positive regulation of protein catabolic process
ILR57_016580	COG1960	acyl-CoA dehydrogenase activity
ILR57_016585	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ILR57_016600	COG1309	transcriptional regulator
ILR57_016605	COG1960	acyl-CoA dehydrogenase activity
ILR57_016650	COG1183	phosphatidylcholine synthase activity
ILR57_016655	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ILR57_016685	COG0739	heme binding
ILR57_016685	COG0741	lytic transglycosylase activity
ILR57_016685	COG1196	nuclear chromosome segregation
ILR57_016695	COG1702	phosphate starvation-inducible protein PhoH
ILR57_016730	COG1295	ribonuclease BN
ILR57_016735	COG0697	spore germination
ILR57_016740	COG2169	Transcriptional regulator
ILR57_016745	COG0179	Fumarylacetoacetate (FAA) hydrolase
ILR57_016790	COG0557	exoribonuclease II activity
ILR57_016795	COG0339	signal peptide processing
ILR57_016800	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
ILR57_016830	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ILR57_016835	COG1960	acyl-CoA dehydrogenase activity
ILR57_016990	COG0626	cystathionine gamma-synthase activity
ILR57_016995	COG0433	COG0433 Predicted ATPase
ILR57_017000	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ILR57_017000	COG1017	nitric oxide dioxygenase activity
ILR57_017005	COG1959	2 iron, 2 sulfur cluster binding
ILR57_017020	COG1301	dicarboxylic acid transport
ILR57_017025	COG1946	Acyl-CoA thioesterase
ILR57_017045	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ILR57_017050	COG1040	competence protein
ILR57_017055	COG0494	nUDIX hydrolase
ILR57_017065	COG0598	Magnesium transport protein CorA
ILR57_017075	COG2854	intermembrane phospholipid transfer
ILR57_017085	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ILR57_017090	COG1127	ABC transporter
ILR57_017100	COG0513	Belongs to the DEAD box helicase family
ILR57_017120	COG0408	coproporphyrinogen oxidase activity
ILR57_017135	COG1960	acyl-CoA dehydrogenase activity
ILR57_017145	COG1983	PspC domain protein
ILR57_017150	COG0517	IMP dehydrogenase activity
ILR57_017175	COG0752	glycyl-tRNA synthetase alpha subunit
ILR57_017200	COG0583	DNA-binding transcription factor activity
ILR57_017240	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_017250	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ILR57_017255	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ILR57_017260	COG0833	amino acid
ILR57_017290	COG1192	Involved in chromosome partitioning
ILR57_017295	COG0628	permease
ILR57_017305	COG1289	transmembrane transporter activity
ILR57_017320	COG2249	NAD(P)H dehydrogenase (quinone) activity
ILR57_017325	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
ILR57_017335	COG0277	FAD linked oxidase domain protein
ILR57_017340	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ILR57_017365	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ILR57_017370	COG5380	lipid catabolic process
ILR57_017390	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ILR57_017445	COG0194	GDP metabolic process
ILR57_017460	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ILR57_017480	COG3307	-O-antigen
ILR57_017495	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
ILR57_017500	COG1704	LemA family
ILR57_017510	COG0493	'glutamate synthase
ILR57_017515	COG0070	glutamate synthase
ILR57_017515	COG0069	glutamate synthase activity
ILR57_017515	COG0067	glutamate synthase
ILR57_017565	COG2226	methyltransferase
ILR57_017580	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ILR57_017585	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ILR57_017630	COG0833	amino acid
ILR57_017695	COG0488	(ABC) transporter
ILR57_017700	COG2873	o-acetylhomoserine
ILR57_017705	COG4221	oxidoreductase activity
ILR57_017710	COG0659	secondary active sulfate transmembrane transporter activity
ILR57_017735	COG0427	acetyl-CoA hydrolase
ILR57_017765	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ILR57_017785	COG1132	(ABC) transporter
ILR57_017800	COG2329	Antibiotic biosynthesis monooxygenase
ILR57_017815	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ILR57_017885	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ILR57_017975	COG2249	NAD(P)H dehydrogenase (quinone) activity
ILR57_017980	COG1733	regulation of RNA biosynthetic process
ILR57_018015	COG0667	Aldo Keto reductase
ILR57_018035	COG0583	DNA-binding transcription factor activity
ILR57_018040	COG2814	Major facilitator Superfamily
ILR57_018050	COG1113	amino acid transport
ILR57_018070	COG2508	Transcriptional regulator
ILR57_018070	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
ILR57_018100	COG1335	isochorismatase
ILR57_018110	COG1012	belongs to the aldehyde dehydrogenase family
ILR57_018115	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ILR57_018125	COG1113	amino acid transport
ILR57_018135	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ILR57_018175	COG2814	Major facilitator Superfamily
ILR57_018185	COG0351	phosphomethylpyrimidine kinase
ILR57_018185	COG0352	thiamine-phosphate diphosphorylase activity
ILR57_018185	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ILR57_018205	COG1309	transcriptional regulator
ILR57_018210	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ILR57_018230	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ILR57_018240	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ILR57_018245	COG3162	membrane
ILR57_018250	COG2205	protein histidine kinase activity
ILR57_018250	COG2198	Histidine kinase
ILR57_018250	COG0784	Response regulator, receiver
ILR57_018275	COG1522	sequence-specific DNA binding
ILR57_018280	COG1335	isochorismatase
ILR57_018285	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ILR57_018295	COG0668	transmembrane transport
ILR57_018300	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ILR57_018305	COG1519	Transferase
ILR57_018310	COG1902	pentaerythritol trinitrate reductase activity
ILR57_018335	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ILR57_018360	COG0426	domain, Protein
ILR57_018360	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ILR57_018365	COG4774	siderophore transport
ILR57_018370	COG2119	membrane
ILR57_018380	COG0508	dehydrogenase complex catalyzes the overall conversion of
ILR57_018390	COG4942	peptidase
ILR57_018405	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ILR57_018415	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ILR57_018435	COG0189	ligase activity
ILR57_018455	COG0708	Exodeoxyribonuclease III
ILR57_018460	COG1393	Belongs to the ArsC family
ILR57_018475	COG3706	GGDEF domain
ILR57_018510	COG2351	hydroxyisourate hydrolase activity
ILR57_018515	COG2233	PERMEase
ILR57_018525	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ILR57_018535	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
ILR57_018545	COG3150	esterase
ILR57_018570	COG2918	glutathione biosynthetic process
ILR57_018585	COG2733	membrane
ILR57_018590	COG0436	Aminotransferase
ILR57_018595	COG0534	Mate efflux family protein
ILR57_018680	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ILR57_018685	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ILR57_018695	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ILR57_018720	COG1280	lysine exporter protein (LysE YggA)
ILR57_018740	COG0010	Belongs to the arginase family
ILR57_018770	COG2188	Transcriptional regulator
ILR57_018780	COG0523	cobalamin synthesis protein
ILR57_018790	COG1113	amino acid transport
ILR57_018800	COG0625	glutathione transferase activity
ILR57_018820	COG1683	Conserved Protein
ILR57_018825	COG0534	Mate efflux family protein
ILR57_018830	COG0385	Bile acid
ILR57_018835	COG1335	isochorismatase
ILR57_018840	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ILR57_018860	COG2116	formate transmembrane transporter activity
ILR57_018865	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ILR57_018880	COG3188	usher protein
ILR57_018885	COG3188	usher protein
ILR57_018890	COG3121	Chaperone
ILR57_018900	COG2983	Belongs to the UPF0260 family
ILR57_018920	COG1194	a g-specific adenine glycosylase
ILR57_018935	COG2818	Glycosylase
ILR57_018940	COG1064	alcohol dehydrogenase
ILR57_018945	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ILR57_018960	COG0583	DNA-binding transcription factor activity
ILR57_018965	COG0656	L-ascorbic acid biosynthetic process
ILR57_018970	COG2814	Major facilitator Superfamily
ILR57_019005	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ILR57_019020	COG2233	PERMEase
ILR57_019060	COG0733	neurotransmitter:sodium symporter activity
ILR57_019100	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ILR57_019105	COG0657	acetylesterase activity
ILR57_019155	COG2951	lytic endotransglycosylase activity
ILR57_019160	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ILR57_019175	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ILR57_019185	COG0671	phosphoesterase, PA-phosphatase related
ILR57_019190	COG0861	Integral membrane protein TerC family
ILR57_019200	COG0754	glutathionylspermidine amidase activity
ILR57_019210	COG0402	S-adenosylhomocysteine deaminase activity
ILR57_019225	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ILR57_019230	COG1230	cation diffusion facilitator family transporter
ILR57_019245	COG0706	membrane insertase activity
ILR57_019285	COG4683	PFAM Phage derived protein Gp49-like (DUF891)