AM435_00005 SM00481 DNA polymerase alpha chain like domain AM435_00020 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM435_00020 SM00475 5'-3' exonuclease AM435_00025 SM00305 Hint (Hedgehog/Intein) domain C-terminal region AM435_00025 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AM435_00120 SM00382 ATPases associated with a variety of cellular activities AM435_00275 SM00479 AM435_00275 AM435_00310 SM00382 ATPases associated with a variety of cellular activities AM435_00405 SM00487 DEAD-like helicases superfamily AM435_00405 SM00490 helicase superfamily c-terminal domain AM435_00410 SM00470 ParB-like nuclease domain AM435_00420 SM00470 ParB-like nuclease domain AM435_00425 SM00382 ATPases associated with a variety of cellular activities AM435_00625 SM00072 Guanylate kinase homologues. AM435_00665 SM00327 von Willebrand factor (vWF) type A domain AM435_00780 SM00857 Resolvase, N terminal domain AM435_00910 SM00530 Helix-turn-helix XRE-family like proteins AM435_00990 SM00470 ParB-like nuclease domain AM435_01050 SM00528 Domain in histone-like proteins of HNS family AM435_01070 SM00318 Staphylococcal nuclease homologues AM435_01240 SM00363 S4 RNA-binding domain AM435_01265 SM00853 MutL C terminal dimerisation domain AM435_01265 SM01340 AM435_01265 AM435_01335 SM00862 Transcriptional regulatory protein, C terminal AM435_01350 SM00382 ATPases associated with a variety of cellular activities AM435_01360 SM00342 helix_turn_helix, arabinose operon control protein AM435_01360 SM00871 Bacterial transcription activator, effector binding domain AM435_01400 SM00830 Chorismate mutase type II AM435_01405 SM00344 helix_turn_helix ASNC type AM435_01455 SM00382 ATPases associated with a variety of cellular activities AM435_01475 SM00831 Cation transporter/ATPase, N-terminus AM435_01490 SM00344 helix_turn_helix ASNC type AM435_01520 SM00822 AM435_01520 AM435_01545 SM00382 ATPases associated with a variety of cellular activities AM435_01570 SM00226 Low molecular weight phosphatase family AM435_01605 SM01236 AM435_01605 AM435_01720 SM00530 Helix-turn-helix XRE-family like proteins AM435_01960 SM00530 Helix-turn-helix XRE-family like proteins AM435_02020 SM00878 Biotin carboxylase C-terminal domain AM435_02050 SM00448 cheY-homologous receiver domain AM435_02050 SM01012 AM435_02050 AM435_02070 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM435_02080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM435_02085 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_02100 SM00852 Probable molybdopterin binding domain AM435_02105 SM00852 Probable molybdopterin binding domain AM435_02115 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_02205 SM00382 ATPases associated with a variety of cellular activities AM435_02205 SM00448 cheY-homologous receiver domain AM435_02210 SM00091 PAS domain AM435_02210 SM00387 Histidine kinase-like ATPases AM435_02210 SM00388 His Kinase A (phosphoacceptor) domain AM435_02215 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_02245 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM435_02255 SM00935 Outer membrane protein (OmpH-like) AM435_02290 SM00382 ATPases associated with a variety of cellular activities AM435_02295 SM00363 S4 RNA-binding domain AM435_02325 SM00344 helix_turn_helix ASNC type AM435_02370 SM00052 Putative diguanylate phosphodiesterase AM435_02370 SM00091 PAS domain AM435_02370 SM00267 diguanylate cyclase AM435_02380 SM00347 helix_turn_helix multiple antibiotic resistance protein AM435_02455 SM00116 Domain in cystathionine beta-synthase and other proteins. AM435_02480 SM00382 ATPases associated with a variety of cellular activities AM435_02480 SM00962 SRP54-type protein, GTPase domain AM435_02480 SM00963 SRP54-type protein, helical bundle domain AM435_02550 SM01264 AM435_02550 AM435_02590 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM435_02605 SM00382 ATPases associated with a variety of cellular activities AM435_02605 SM01086 C-terminal, D2-small domain, of ClpB protein AM435_02670 SM01192 AM435_02670 AM435_02670 SM01193 AM435_02670 AM435_02690 SM00882 Coenzyme A transferase AM435_02695 SM00882 Coenzyme A transferase AM435_02705 SM00998 Adenylosuccinate lyase C-terminus AM435_02740 SM00710 Parallel beta-helix repeats AM435_02750 SM00564 beta-propeller repeat AM435_02770 SM00849 Metallo-beta-lactamase superfamily AM435_02775 SM00346 helix_turn_helix isocitrate lyase regulation AM435_02795 SM00855 Phosphoglycerate mutase family AM435_02815 SM00347 helix_turn_helix multiple antibiotic resistance protein AM435_02860 SM00903 Flavin reductase like domain AM435_02865 SM00342 helix_turn_helix, arabinose operon control protein AM435_02900 SM00882 Coenzyme A transferase AM435_02905 SM00882 Coenzyme A transferase AM435_02920 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM435_02990 SM00342 helix_turn_helix, arabinose operon control protein AM435_03005 SM00829 Enoylreductase AM435_03020 SM00382 ATPases associated with a variety of cellular activities AM435_03030 SM00342 helix_turn_helix, arabinose operon control protein AM435_03040 SM01400 AM435_03040 AM435_03120 SM00421 helix_turn_helix, Lux Regulon AM435_03175 SM00530 Helix-turn-helix XRE-family like proteins AM435_03215 SM00822 AM435_03215 AM435_03220 SM00822 AM435_03220 AM435_03230 SM00342 helix_turn_helix, arabinose operon control protein AM435_03240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM435_03240 SM00387 Histidine kinase-like ATPases AM435_03240 SM00388 His Kinase A (phosphoacceptor) domain AM435_03245 SM00448 cheY-homologous receiver domain AM435_03245 SM00862 Transcriptional regulatory protein, C terminal AM435_03335 SM00829 Enoylreductase AM435_03360 SM00155 Phospholipase D. Active site motifs. AM435_03385 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_03435 SM00382 ATPases associated with a variety of cellular activities AM435_03470 SM00342 helix_turn_helix, arabinose operon control protein AM435_03480 SM00903 Flavin reductase like domain AM435_03505 SM00342 helix_turn_helix, arabinose operon control protein AM435_03530 SM00882 Coenzyme A transferase AM435_03535 SM00882 Coenzyme A transferase AM435_03590 SM00567 E-Z type HEAT repeats AM435_03595 SM00382 ATPases associated with a variety of cellular activities AM435_03620 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_03620 SM00866 AM435_03620 AM435_03640 SM00342 helix_turn_helix, arabinose operon control protein AM435_03665 SM00849 Metallo-beta-lactamase superfamily AM435_03670 SM00382 ATPases associated with a variety of cellular activities AM435_03680 SM00829 Enoylreductase AM435_03715 SM00861 Transketolase, pyrimidine binding domain AM435_03725 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_03745 SM00267 diguanylate cyclase AM435_03770 SM00382 ATPases associated with a variety of cellular activities AM435_03800 SM00341 Helicase and RNase D C-terminal AM435_03800 SM00474 3'-5' exonuclease AM435_03805 SM00493 AM435_03805 AM435_03855 SM01324 AM435_03855 AM435_03895 SM00382 ATPases associated with a variety of cellular activities AM435_03955 SM00855 Phosphoglycerate mutase family AM435_03985 SM01006 Siderophore biosynthesis protein domain AM435_04075 SM00342 helix_turn_helix, arabinose operon control protein AM435_04085 SM00411 bacterial (prokaryotic) histone like domain AM435_04120 SM00271 DnaJ molecular chaperone homology domain AM435_04135 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AM435_04145 SM00487 DEAD-like helicases superfamily AM435_04145 SM00490 helicase superfamily c-terminal domain AM435_04145 SM00982 AM435_04145 AM435_04145 SM01058 CarD-like/TRCF domain AM435_04200 SM00382 ATPases associated with a variety of cellular activities AM435_04285 SM00342 helix_turn_helix, arabinose operon control protein AM435_04300 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM435_04310 SM00411 bacterial (prokaryotic) histone like domain AM435_04315 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_04340 SM00986 Uracil DNA glycosylase superfamily AM435_04340 SM00987 UreE urease accessory protein, C-terminal domain AM435_04400 SM00382 ATPases associated with a variety of cellular activities AM435_04415 SM00470 ParB-like nuclease domain AM435_04475 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AM435_04485 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM435_04505 SM00382 ATPases associated with a variety of cellular activities AM435_04515 SM00342 helix_turn_helix, arabinose operon control protein AM435_04540 SM00344 helix_turn_helix ASNC type AM435_04575 SM00867 YceI-like domain AM435_04585 SM00861 Transketolase, pyrimidine binding domain AM435_04620 SM00530 Helix-turn-helix XRE-family like proteins AM435_04640 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_04640 SM00876 Biotin and Thiamin Synthesis associated domain AM435_04740 SM01236 AM435_04740 AM435_04750 SM00563 Phosphate acyltransferases AM435_04760 SM00344 helix_turn_helix ASNC type AM435_04770 SM00382 ATPases associated with a variety of cellular activities AM435_04785 SM00062 Bacterial periplasmic substrate-binding proteins AM435_04820 SM00382 ATPases associated with a variety of cellular activities AM435_04820 SM00930 AM435_04820 AM435_04845 SM00100 Cyclic nucleotide-monophosphate binding domain AM435_04845 SM00419 helix_turn_helix, cAMP Regulatory protein AM435_04880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM435_04895 SM00342 helix_turn_helix, arabinose operon control protein AM435_04920 SM00870 AM435_04920 AM435_04925 SM00481 DNA polymerase alpha chain like domain AM435_04975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM435_05005 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_05005 SM00895 AM435_05005 AM435_05030 SM00382 ATPases associated with a variety of cellular activities AM435_05035 SM00062 Bacterial periplasmic substrate-binding proteins AM435_05095 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_05115 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM435_05165 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_05200 SM00822 AM435_05200 AM435_05205 SM00450 Rhodanese Homology Domain AM435_05245 SM00062 Bacterial periplasmic substrate-binding proteins AM435_05250 SM00062 Bacterial periplasmic substrate-binding proteins AM435_05255 SM00382 ATPases associated with a variety of cellular activities AM435_05280 SM00421 helix_turn_helix, Lux Regulon AM435_05280 SM00448 cheY-homologous receiver domain AM435_05285 SM00387 Histidine kinase-like ATPases AM435_05285 SM00388 His Kinase A (phosphoacceptor) domain AM435_05285 SM00448 cheY-homologous receiver domain AM435_05295 SM00344 helix_turn_helix ASNC type AM435_05315 SM00384 DNA binding domain with preference for A/T rich regions AM435_05330 SM01060 AM435_05330 AM435_05335 SM01236 AM435_05335 AM435_05415 SM00878 Biotin carboxylase C-terminal domain AM435_05460 SM00882 Coenzyme A transferase AM435_05465 SM00882 Coenzyme A transferase AM435_05500 SM00346 helix_turn_helix isocitrate lyase regulation AM435_05520 SM00346 helix_turn_helix isocitrate lyase regulation AM435_05560 SM00382 ATPases associated with a variety of cellular activities AM435_05570 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_05570 SM00866 AM435_05570 AM435_05580 SM00346 helix_turn_helix isocitrate lyase regulation AM435_05630 SM00903 Flavin reductase like domain AM435_05645 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_05645 SM00895 AM435_05645 AM435_05660 SM01060 AM435_05660 AM435_05825 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_05825 SM00895 AM435_05825 AM435_05835 SM01130 AM435_05835 AM435_05855 SM00422 helix_turn_helix, mercury resistance AM435_05890 SM00248 ankyrin repeats AM435_05925 SM00382 ATPases associated with a variety of cellular activities AM435_05925 SM01086 C-terminal, D2-small domain, of ClpB protein AM435_06005 SM00382 ATPases associated with a variety of cellular activities AM435_06045 SM00796 Allophanate hydrolase subunit 1 AM435_06045 SM00797 Allophanate hydrolase subunit 2 AM435_06045 SM00878 Biotin carboxylase C-terminal domain AM435_06060 SM00829 Enoylreductase AM435_06090 SM00671 Sel1-like repeats. AM435_06100 SM00878 Biotin carboxylase C-terminal domain AM435_06105 SM00796 Allophanate hydrolase subunit 1 AM435_06105 SM00797 Allophanate hydrolase subunit 2 AM435_06190 SM00422 helix_turn_helix, mercury resistance AM435_06215 SM00052 Putative diguanylate phosphodiesterase AM435_06225 SM00344 helix_turn_helix ASNC type AM435_06230 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AM435_06230 SM00534 ATPase domain of DNA mismatch repair MUTS family AM435_06275 SM00382 ATPases associated with a variety of cellular activities AM435_06285 SM00382 ATPases associated with a variety of cellular activities AM435_06305 SM00116 Domain in cystathionine beta-synthase and other proteins. AM435_06310 SM00840 AM435_06310 AM435_06395 SM00357 Cold shock protein domain AM435_06420 SM00530 Helix-turn-helix XRE-family like proteins AM435_06475 SM00422 helix_turn_helix, mercury resistance AM435_06535 SM00382 ATPases associated with a variety of cellular activities AM435_06535 SM00487 DEAD-like helicases superfamily AM435_06535 SM00490 helicase superfamily c-terminal domain AM435_06535 SM00847 Helicase associated domain (HA2) Add an annotation AM435_06615 SM00981 AM435_06615 AM435_06630 SM00382 ATPases associated with a variety of cellular activities AM435_06630 SM01086 C-terminal, D2-small domain, of ClpB protein AM435_06650 SM00100 Cyclic nucleotide-monophosphate binding domain AM435_06650 SM00419 helix_turn_helix, cAMP Regulatory protein AM435_06670 SM00788 Adenylosuccinate synthetase AM435_06680 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM435_06685 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM435_06835 SM00342 helix_turn_helix, arabinose operon control protein AM435_06895 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_06895 SM00895 AM435_06895 AM435_06900 SM00347 helix_turn_helix multiple antibiotic resistance protein AM435_06950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_06950 SM00895 AM435_06950 AM435_06960 SM01130 AM435_06960 AM435_06965 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM435_06975 SM00858 AM435_06975 AM435_06985 SM00342 helix_turn_helix, arabinose operon control protein AM435_07020 SM00344 helix_turn_helix ASNC type AM435_07035 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_07035 SM00895 AM435_07035 AM435_07065 SM00671 Sel1-like repeats. AM435_07070 SM00671 Sel1-like repeats. AM435_07075 SM00671 Sel1-like repeats. AM435_07130 SM00267 diguanylate cyclase AM435_07140 SM00479 AM435_07140 AM435_07160 SM00382 ATPases associated with a variety of cellular activities AM435_07180 SM00257 Lysin motif AM435_07185 SM00479 AM435_07185 AM435_07240 SM00422 helix_turn_helix, mercury resistance AM435_07260 SM01011 Aminopeptidase P, N-terminal domain AM435_07360 SM00530 Helix-turn-helix XRE-family like proteins AM435_07395 SM00287 Bacterial SH3 domain homologues AM435_07590 SM00530 Helix-turn-helix XRE-family like proteins AM435_07695 SM00463 Small MutS-related domain AM435_07705 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM435_07710 SM01092 CO dehydrogenase flavoprotein C-terminal domain AM435_07770 SM00382 ATPases associated with a variety of cellular activities AM435_07775 SM00382 ATPases associated with a variety of cellular activities AM435_07820 SM00382 ATPases associated with a variety of cellular activities AM435_07885 SM00829 Enoylreductase AM435_07890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM435_08040 SM00841 Elongation factor P, C-terminal AM435_08040 SM01185 AM435_08040 AM435_08055 SM00052 Putative diguanylate phosphodiesterase AM435_08090 SM00257 Lysin motif AM435_08110 SM00936 Penicillin-binding protein 5, C-terminal domain AM435_08155 SM00382 ATPases associated with a variety of cellular activities AM435_08185 SM00344 helix_turn_helix ASNC type AM435_08240 SM00487 DEAD-like helicases superfamily AM435_08240 SM00490 helicase superfamily c-terminal domain AM435_08270 SM00880 AM435_08270 AM435_08270 SM01118 AM435_08270 AM435_08325 SM01329 AM435_08325 AM435_08425 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AM435_08445 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM435_08460 SM00487 DEAD-like helicases superfamily AM435_08460 SM00490 helicase superfamily c-terminal domain AM435_08470 SM00267 diguanylate cyclase AM435_08550 SM00358 Double-stranded RNA binding motif AM435_08550 SM00535 Ribonuclease III family AM435_08565 SM00838 Elongation factor G C-terminus AM435_08575 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM435_08625 SM00382 ATPases associated with a variety of cellular activities AM435_08695 SM01211 AM435_08695 AM435_08700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM435_08705 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM435_08710 SM00382 ATPases associated with a variety of cellular activities AM435_08835 SM00849 Metallo-beta-lactamase superfamily AM435_08840 SM00382 ATPases associated with a variety of cellular activities AM435_08910 SM00434 DNA Topoisomerase IV AM435_08915 SM00893 Electron transfer flavoprotein domain AM435_08920 SM00893 Electron transfer flavoprotein domain AM435_08955 SM00382 ATPases associated with a variety of cellular activities AM435_08960 SM00978 AM435_08960 AM435_09095 SM00849 Metallo-beta-lactamase superfamily AM435_09110 SM00883 Chaperonin 10 Kd subunit AM435_09125 SM00046 Diacylglycerol kinase catalytic domain (presumed) AM435_09200 SM00382 ATPases associated with a variety of cellular activities AM435_09210 SM01103 AM435_09210 AM435_09225 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AM435_09230 SM00851 MGS-like domain AM435_09230 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM435_09260 SM00854 Bacterial capsule synthesis protein PGA_cap AM435_09295 SM00881 CoA binding domain AM435_09315 SM00861 Transketolase, pyrimidine binding domain AM435_09360 SM00450 Rhodanese Homology Domain AM435_09470 SM00014 Acid phosphatase homologues AM435_09505 SM00822 AM435_09505 AM435_09555 SM00387 Histidine kinase-like ATPases AM435_09555 SM00388 His Kinase A (phosphoacceptor) domain AM435_09560 SM00448 cheY-homologous receiver domain AM435_09560 SM00862 Transcriptional regulatory protein, C terminal AM435_09580 SM00563 Phosphate acyltransferases AM435_09595 SM00244 prohibitin homologues AM435_09655 SM01040 BRO family, N-terminal domain AM435_09895 SM00507 HNH nucleases AM435_09940 SM00530 Helix-turn-helix XRE-family like proteins AM435_10025 SM00829 Enoylreductase AM435_10030 SM00342 helix_turn_helix, arabinose operon control protein AM435_10050 SM00342 helix_turn_helix, arabinose operon control protein AM435_10085 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_10120 SM00845 GatB domain AM435_10270 SM00073 Histidine Phosphotransfer domain AM435_10270 SM00260 Two component signalling adaptor domain AM435_10270 SM00387 Histidine kinase-like ATPases AM435_10270 SM00448 cheY-homologous receiver domain AM435_10270 SM01231 AM435_10270 AM435_10275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM435_10280 SM00260 Two component signalling adaptor domain AM435_10285 SM00448 cheY-homologous receiver domain AM435_10290 SM00448 cheY-homologous receiver domain AM435_10345 SM00671 Sel1-like repeats. AM435_10370 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM435_10370 SM01232 AM435_10370 AM435_10390 SM00838 Elongation factor G C-terminus AM435_10455 SM00564 beta-propeller repeat AM435_10470 SM00342 helix_turn_helix, arabinose operon control protein AM435_10520 SM00957 SecA DEAD-like domain AM435_10520 SM00958 SecA preprotein cross-linking domain AM435_10530 SM00849 Metallo-beta-lactamase superfamily AM435_10560 SM00342 helix_turn_helix, arabinose operon control protein AM435_10620 SM00448 cheY-homologous receiver domain AM435_10620 SM00862 Transcriptional regulatory protein, C terminal AM435_10625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM435_10625 SM00387 Histidine kinase-like ATPases AM435_10625 SM00388 His Kinase A (phosphoacceptor) domain AM435_10770 SM00387 Histidine kinase-like ATPases AM435_10770 SM00388 His Kinase A (phosphoacceptor) domain AM435_10815 SM01323 AM435_10815 AM435_10845 SM00481 DNA polymerase alpha chain like domain AM435_10870 SM00450 Rhodanese Homology Domain AM435_10970 SM00155 Phospholipase D. Active site motifs. AM435_10975 SM00563 Phosphate acyltransferases AM435_11005 SM00650 Ribosomal RNA adenine dimethylases AM435_11040 SM00878 Biotin carboxylase C-terminal domain AM435_11130 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM435_11160 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_11210 SM00342 helix_turn_helix, arabinose operon control protein AM435_11260 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_11260 SM00955 AM435_11260 AM435_11320 SM00662 RNA polymerases D AM435_11325 SM00363 S4 RNA-binding domain AM435_11325 SM01390 AM435_11325 AM435_11390 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM435_11395 SM01374 AM435_11395 AM435_11415 SM00322 K homology RNA-binding domain AM435_11430 SM01382 AM435_11430 AM435_11430 SM01383 AM435_11430 AM435_11450 SM01403 AM435_11450 AM435_11500 SM00563 Phosphate acyltransferases AM435_11515 SM00487 DEAD-like helicases superfamily AM435_11515 SM00490 helicase superfamily c-terminal domain AM435_11560 SM00382 ATPases associated with a variety of cellular activities AM435_11570 SM00487 DEAD-like helicases superfamily AM435_11570 SM00490 helicase superfamily c-terminal domain AM435_11580 SM00861 Transketolase, pyrimidine binding domain AM435_11620 SM00116 Domain in cystathionine beta-synthase and other proteins. AM435_11720 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM435_11905 SM00072 Guanylate kinase homologues. AM435_11910 SM01409 AM435_11910 AM435_11920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM435_11920 SM00954 Region found in RelA / SpoT proteins AM435_12005 SM00965 Secretin and TonB N terminus short domain AM435_12025 SM00842 Cell division protein FtsA AM435_12155 SM00671 Sel1-like repeats. AM435_12160 SM00382 ATPases associated with a variety of cellular activities AM435_12175 SM00947 Carbonic anhydrase AM435_12180 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_12180 SM00732 Likely ribonuclease with RNase H fold. AM435_12185 SM00448 cheY-homologous receiver domain AM435_12185 SM00862 Transcriptional regulatory protein, C terminal AM435_12190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM435_12190 SM00387 Histidine kinase-like ATPases AM435_12190 SM00388 His Kinase A (phosphoacceptor) domain AM435_12240 SM00474 3'-5' exonuclease AM435_12250 SM00530 Helix-turn-helix XRE-family like proteins AM435_12265 SM00357 Cold shock protein domain AM435_12285 SM00342 helix_turn_helix, arabinose operon control protein AM435_12305 SM00477 DNA/RNA non-specific endonuclease AM435_12305 SM00892 DNA/RNA non-specific endonuclease AM435_12325 SM00342 helix_turn_helix, arabinose operon control protein AM435_12395 SM00342 helix_turn_helix, arabinose operon control protein AM435_12480 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_12490 SM00530 Helix-turn-helix XRE-family like proteins AM435_12535 SM00829 Enoylreductase AM435_12580 SM00387 Histidine kinase-like ATPases AM435_12580 SM00388 His Kinase A (phosphoacceptor) domain AM435_12580 SM00448 cheY-homologous receiver domain AM435_12590 SM00421 helix_turn_helix, Lux Regulon AM435_12590 SM00448 cheY-homologous receiver domain AM435_12605 SM00344 helix_turn_helix ASNC type AM435_12645 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM435_12675 SM00116 Domain in cystathionine beta-synthase and other proteins. AM435_12675 SM01240 AM435_12675 AM435_12685 SM00849 Metallo-beta-lactamase superfamily AM435_12730 SM00864 Tubulin/FtsZ family, GTPase domain AM435_12730 SM00865 Tubulin/FtsZ family, C-terminal domain AM435_12735 SM00842 Cell division protein FtsA AM435_12915 SM00387 Histidine kinase-like ATPases AM435_12915 SM00433 TopoisomeraseII AM435_12945 SM00257 Lysin motif AM435_13000 SM00448 cheY-homologous receiver domain AM435_13000 SM00862 Transcriptional regulatory protein, C terminal AM435_13005 SM00387 Histidine kinase-like ATPases AM435_13005 SM00388 His Kinase A (phosphoacceptor) domain AM435_13030 SM00450 Rhodanese Homology Domain AM435_13040 SM00248 ankyrin repeats AM435_13045 SM01060 AM435_13045 AM435_13160 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_13160 SM00866 AM435_13160 AM435_13170 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM435_13200 SM00346 helix_turn_helix isocitrate lyase regulation AM435_13230 SM01130 AM435_13230 AM435_13260 SM00382 ATPases associated with a variety of cellular activities AM435_13290 SM00478 endonuclease III AM435_13290 SM00525 AM435_13290 AM435_13310 SM00829 Enoylreductase AM435_13315 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_13360 SM00271 DnaJ molecular chaperone homology domain AM435_13510 SM00382 ATPases associated with a variety of cellular activities AM435_13525 SM00387 Histidine kinase-like ATPases AM435_13525 SM00433 TopoisomeraseII AM435_13535 SM00480 DNA polymerase III beta subunit AM435_13540 SM00382 ATPases associated with a variety of cellular activities AM435_13540 SM00760 Bacterial dnaA protein helix-turn-helix domain AM435_13555 SM01234 AM435_13555 AM435_13625 SM00014 Acid phosphatase homologues AM435_13650 SM01001 AIR carboxylase AM435_13670 SM00235 Zinc-dependent metalloprotease AM435_13675 SM00235 Zinc-dependent metalloprotease AM435_13695 SM00849 Metallo-beta-lactamase superfamily AM435_13745 SM00248 ankyrin repeats AM435_13770 SM00904 Riboflavin kinase AM435_13790 SM00382 ATPases associated with a variety of cellular activities AM435_13805 SM00062 Bacterial periplasmic substrate-binding proteins AM435_13810 SM00062 Bacterial periplasmic substrate-binding proteins AM435_13895 SM00644 AM435_13895 AM435_13920 SM00226 Low molecular weight phosphatase family AM435_13930 SM00984 UDP binding domain AM435_14000 SM00984 UDP binding domain AM435_14025 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_14025 SM00895 AM435_14025 AM435_14050 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_14050 SM00895 AM435_14050 AM435_14100 SM00825 Beta-ketoacyl synthase AM435_14140 SM00344 helix_turn_helix ASNC type AM435_14150 SM01005 Alanine racemase, C-terminal domain AM435_14220 SM00421 helix_turn_helix, Lux Regulon AM435_14240 SM00823 Phosphopantetheine attachment site AM435_14240 SM01294 AM435_14240 AM435_14245 SM00823 Phosphopantetheine attachment site AM435_14245 SM00824 Thioesterase AM435_14360 SM00836 DALR anticodon binding domain AM435_14360 SM01016 Arginyl tRNA synthetase N terminal dom AM435_14365 SM00919 Malic enzyme, NAD binding domain AM435_14365 SM01274 AM435_14365 AM435_14390 SM00382 ATPases associated with a variety of cellular activities AM435_14440 SM00382 ATPases associated with a variety of cellular activities AM435_14460 SM00342 helix_turn_helix, arabinose operon control protein AM435_14575 SM00422 helix_turn_helix, mercury resistance AM435_14585 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_14605 SM00641 Glycosyl hydrolases family 25 AM435_14620 SM01091 Transporter associated domain AM435_14640 SM00434 DNA Topoisomerase IV AM435_14675 SM01130 AM435_14675 AM435_14680 SM01007 Class II Aldolase and Adducin N-terminal domain AM435_14685 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_14705 SM00382 ATPases associated with a variety of cellular activities AM435_14805 SM00938 Nitrogen regulatory protein P-II AM435_14870 SM00245 tail specific protease AM435_14875 SM00382 ATPases associated with a variety of cellular activities AM435_14875 SM00448 cheY-homologous receiver domain AM435_14880 SM00387 Histidine kinase-like ATPases AM435_14880 SM00388 His Kinase A (phosphoacceptor) domain AM435_14885 SM00421 helix_turn_helix, Lux Regulon AM435_14885 SM00448 cheY-homologous receiver domain AM435_14915 SM00899 AM435_14915 AM435_15005 SM00448 cheY-homologous receiver domain AM435_15005 SM00850 LytTr DNA-binding domain AM435_15035 SM00528 Domain in histone-like proteins of HNS family AM435_15045 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM435_15055 SM00240 Forkhead associated domain AM435_15105 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AM435_15105 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM435_15110 SM00649 Ribosomal protein L11/L12 AM435_15135 SM00663 RNA polymerase I subunit A N-terminus AM435_15175 SM00387 Histidine kinase-like ATPases AM435_15200 SM00422 helix_turn_helix, mercury resistance AM435_15290 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM435_15290 SM00465 GIY-YIG type nucleases (URI domain) AM435_15305 SM00342 helix_turn_helix, arabinose operon control protein AM435_15315 SM00346 helix_turn_helix isocitrate lyase regulation AM435_15335 SM00732 Likely ribonuclease with RNase H fold. AM435_15360 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM435_15420 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_15525 SM00382 ATPases associated with a variety of cellular activities AM435_15535 SM01387 AM435_15535 AM435_15540 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_15540 SM00322 K homology RNA-binding domain AM435_15555 SM00271 DnaJ molecular chaperone homology domain AM435_15575 SM00487 DEAD-like helicases superfamily AM435_15575 SM00490 helicase superfamily c-terminal domain AM435_15605 SM00116 Domain in cystathionine beta-synthase and other proteins. AM435_15605 SM01091 Transporter associated domain AM435_15640 SM00849 Metallo-beta-lactamase superfamily AM435_15710 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_15740 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_15750 SM00363 S4 RNA-binding domain AM435_15790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM435_15840 SM01329 AM435_15840 AM435_15860 SM00316 Ribosomal protein S1-like RNA-binding domain AM435_15865 SM00342 helix_turn_helix, arabinose operon control protein AM435_15875 SM00870 AM435_15875 AM435_15890 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM435_15920 SM00382 ATPases associated with a variety of cellular activities AM435_15930 SM00829 Enoylreductase AM435_15945 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM435_15945 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM435_15945 SM00493 AM435_15945 AM435_15965 SM00360 RNA recognition motif AM435_16105 SM00671 Sel1-like repeats. AM435_16120 SM00917 LeuA allosteric (dimerisation) domain AM435_16125 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AM435_16145 SM00382 ATPases associated with a variety of cellular activities AM435_16145 SM00994 ClpX C4-type zinc finger AM435_16145 SM01086 C-terminal, D2-small domain, of ClpB protein AM435_16220 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM435_16220 SM00245 tail specific protease AM435_16230 SM00014 Acid phosphatase homologues AM435_16240 SM00562 AM435_16240 AM435_16250 SM00028 Tetratricopeptide repeats AM435_16275 SM00564 beta-propeller repeat AM435_16290 SM00563 Phosphate acyltransferases AM435_16355 SM00825 Beta-ketoacyl synthase AM435_16365 SM00822 AM435_16365 AM435_16370 SM00825 Beta-ketoacyl synthase AM435_16395 SM00450 Rhodanese Homology Domain AM435_16405 SM00479 AM435_16405 AM435_16425 SM00382 ATPases associated with a variety of cellular activities AM435_16480 SM00052 Putative diguanylate phosphodiesterase AM435_16480 SM00267 diguanylate cyclase AM435_16500 SM01236 AM435_16500 AM435_16575 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AM435_16575 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AM435_16615 SM00073 Histidine Phosphotransfer domain AM435_16615 SM00387 Histidine kinase-like ATPases AM435_16615 SM00388 His Kinase A (phosphoacceptor) domain AM435_16615 SM00448 cheY-homologous receiver domain AM435_16635 SM00954 Region found in RelA / SpoT proteins AM435_16650 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM435_16695 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM435_16755 SM00873 B3/4 domain AM435_16755 SM00874 tRNA synthetase B5 domain AM435_16755 SM00896 Ferredoxin-fold anticodon binding domain AM435_16760 SM00411 bacterial (prokaryotic) histone like domain AM435_16775 SM00357 Cold shock protein domain AM435_16775 SM00382 ATPases associated with a variety of cellular activities AM435_16775 SM00959 Rho termination factor, N-terminal domain AM435_16795 SM00977 TilS substrate C-terminal domain AM435_16810 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM435_16810 SM00474 3'-5' exonuclease AM435_16810 SM00475 5'-3' exonuclease AM435_16810 SM00482 DNA polymerase A domain AM435_16830 SM00382 ATPases associated with a variety of cellular activities AM435_16840 SM00347 helix_turn_helix multiple antibiotic resistance protein AM435_16860 SM00331 Sigma factor PP2C-like phosphatases AM435_17145 SM00342 helix_turn_helix, arabinose operon control protein AM435_17175 SM00903 Flavin reductase like domain AM435_17225 SM00564 beta-propeller repeat AM435_17315 SM00387 Histidine kinase-like ATPases AM435_17345 SM00448 cheY-homologous receiver domain AM435_17345 SM00862 Transcriptional regulatory protein, C terminal AM435_17350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM435_17350 SM00387 Histidine kinase-like ATPases AM435_17350 SM00388 His Kinase A (phosphoacceptor) domain AM435_17360 SM00267 diguanylate cyclase AM435_17385 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM435_17390 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM435_17390 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM435_17435 SM00357 Cold shock protein domain AM435_17585 SM00382 ATPases associated with a variety of cellular activities AM435_17585 SM00962 SRP54-type protein, GTPase domain AM435_17585 SM00963 SRP54-type protein, helical bundle domain AM435_17605 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_17615 SM00771 ZipA, C-terminal domain (FtsZ-binding) AM435_17620 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM435_17620 SM00292 breast cancer carboxy-terminal domain AM435_17620 SM00532 Ligase N family AM435_17680 SM00363 S4 RNA-binding domain AM435_17715 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM435_17720 SM00822 AM435_17720 AM435_17730 SM00257 Lysin motif AM435_17775 SM01400 AM435_17775 AM435_17810 SM00028 Tetratricopeptide repeats AM435_17820 SM00400 zinc finger AM435_17820 SM00493 AM435_17820 AM435_17830 SM00363 S4 RNA-binding domain AM435_17880 SM01329 AM435_17880 AM435_17940 SM00825 Beta-ketoacyl synthase AM435_17960 SM00838 Elongation factor G C-terminus AM435_17960 SM00889 Elongation factor G, domain IV AM435_18005 SM00843 AM435_18005 AM435_18045 SM00563 Phosphate acyltransferases AM435_18120 SM00382 ATPases associated with a variety of cellular activities AM435_18165 SM01004 Delta-aminolevulinic acid dehydratase AM435_18250 SM00530 Helix-turn-helix XRE-family like proteins AM435_18520 SM01040 BRO family, N-terminal domain AM435_18540 SM01130 AM435_18540 AM435_18560 SM00965 Secretin and TonB N terminus short domain AM435_18675 SM01322 AM435_18675 AM435_18715 SM00346 helix_turn_helix isocitrate lyase regulation AM435_18735 SM00822 AM435_18735 AM435_18805 SM00342 helix_turn_helix, arabinose operon control protein AM435_18835 SM00822 AM435_18835 AM435_18850 SM00861 Transketolase, pyrimidine binding domain AM435_18855 SM01018 B12 binding domain AM435_18915 SM00947 Carbonic anhydrase AM435_18925 SM00382 ATPases associated with a variety of cellular activities AM435_19070 SM00988 UreE urease accessory protein, N-terminal domain AM435_19120 SM00478 endonuclease III AM435_19130 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM435_19150 SM00382 ATPases associated with a variety of cellular activities AM435_19150 SM00464 Found in ATP-dependent protease La (LON) AM435_19255 SM00530 Helix-turn-helix XRE-family like proteins AM435_19480 SM00530 Helix-turn-helix XRE-family like proteins AM435_19505 SM01252 AM435_19505 AM435_19550 SM01230 AM435_19550 AM435_19605 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM435_19615 SM00919 Malic enzyme, NAD binding domain AM435_19615 SM01274 AM435_19615 AM435_19620 SM00052 Putative diguanylate phosphodiesterase AM435_19620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM435_19620 SM00091 PAS domain AM435_19620 SM00267 diguanylate cyclase AM435_19635 SM00996 S-adenosyl-L-homocysteine hydrolase AM435_19635 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM435_19655 SM00729 Elongator protein 3, MiaB family, Radical SAM AM435_19700 SM00342 helix_turn_helix, arabinose operon control protein AM435_19750 SM00382 ATPases associated with a variety of cellular activities AM435_19765 SM00479 AM435_19765 AM435_19805 SM00062 Bacterial periplasmic substrate-binding proteins AM435_19820 SM00382 ATPases associated with a variety of cellular activities AM435_19840 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_19865 SM00382 ATPases associated with a variety of cellular activities AM435_19875 SM00448 cheY-homologous receiver domain AM435_19875 SM00862 Transcriptional regulatory protein, C terminal AM435_19880 SM00387 Histidine kinase-like ATPases AM435_19880 SM00388 His Kinase A (phosphoacceptor) domain AM435_19940 SM00830 Chorismate mutase type II AM435_20005 SM00357 Cold shock protein domain AM435_20010 SM00487 DEAD-like helicases superfamily AM435_20010 SM00490 helicase superfamily c-terminal domain AM435_20030 SM00855 Phosphoglycerate mutase family AM435_20110 SM00220 Serine/Threonine protein kinases, catalytic domain AM435_20185 SM01034 Sensors of blue-light using FAD AM435_20200 SM00342 helix_turn_helix, arabinose operon control protein AM435_20220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM435_20220 SM00895 AM435_20220 AM435_20235 SM00972 Spore Coat Protein U domain AM435_20265 SM00972 Spore Coat Protein U domain AM435_20390 SM00849 Metallo-beta-lactamase superfamily AM435_20400 SM00382 ATPases associated with a variety of cellular activities AM435_20400 SM00930 AM435_20400 AM435_20410 SM01209 AM435_20410 AM435_20410 SM01210 AM435_20410 AM435_20415 SM00798 AICARFT/IMPCHase bienzyme AM435_20415 SM00851 MGS-like domain AM435_20440 SM01228 AM435_20440 AM435_20460 SM00460 Transglutaminase/protease-like homologues AM435_20470 SM01005 Alanine racemase, C-terminal domain AM435_20600 SM00937 AM435_20600 AM435_20615 SM00062 Bacterial periplasmic substrate-binding proteins AM435_20620 SM00342 helix_turn_helix, arabinose operon control protein AM435_20625 SM00822 AM435_20625 AM435_20640 SM00903 Flavin reductase like domain AM435_20655 SM00905 Dihydroneopterin aldolase AM435_20680 SM00387 Histidine kinase-like ATPases AM435_20680 SM00388 His Kinase A (phosphoacceptor) domain AM435_20685 SM00448 cheY-homologous receiver domain AM435_20685 SM00862 Transcriptional regulatory protein, C terminal AM435_20690 SM01230 AM435_20690 AM435_20735 SM00671 Sel1-like repeats.