locus-tag class description AM442_00010 PF04002 RadC-like JAB domain AM442_00015 PF01062 Bestrophin, RFP-TM, chloride channel AM442_00020 PF02811 PHP domain AM442_00025 PF04279 Intracellular septation protein A AM442_00030 PF03795 YCII-related domain AM442_00040 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM442_00040 PF01266 FAD dependent oxidoreductase AM442_00050 PF04461 Protein of unknown function (DUF520) AM442_00060 PF03061 Thioesterase superfamily AM442_00065 PF00085 Thioredoxin AM442_00070 PF00561 alpha/beta hydrolase fold AM442_00075 PF04273 Putative phosphatase (DUF442) AM442_00075 PF00753 Metallo-beta-lactamase superfamily AM442_00085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_00085 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_00120 PF00990 Diguanylate cyclase, GGDEF domain AM442_00120 PF17152 Periplasmic sensor domain AM442_00125 PF01389 OmpA-like transmembrane domain AM442_00125 PF00691 OmpA family AM442_00130 PF10518 TAT (twin-arginine translocation) pathway signal sequence AM442_00130 PF00149 Calcineurin-like phosphoesterase AM442_00135 PF13091 PLD-like domain AM442_00145 PF16360 GTP-binding GTPase Middle Region AM442_00145 PF13167 GTP-binding GTPase N-terminal AM442_00145 PF01926 50S ribosome-binding GTPase AM442_00165 PF00149 Calcineurin-like phosphoesterase AM442_00170 PF00398 Ribosomal RNA adenine dimethylase AM442_00175 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM442_00180 PF00572 Ribosomal protein L13 AM442_00185 PF00380 Ribosomal protein S9/S16 AM442_00190 PF13417 Glutathione S-transferase, N-terminal domain AM442_00190 PF00043 Glutathione S-transferase, C-terminal domain AM442_00195 PF04386 Stringent starvation protein B AM442_00205 PF02785 Biotin carboxylase C-terminal domain AM442_00205 PF00289 Biotin carboxylase, N-terminal domain AM442_00205 PF00364 Biotin-requiring enzyme AM442_00205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_00210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_00210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_00210 PF00378 Enoyl-CoA hydratase/isomerase AM442_00215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00215 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00220 PF01039 Carboxyl transferase domain AM442_00235 PF17932 Tetracyclin repressor-like, C-terminal domain AM442_00235 PF00440 Bacterial regulatory proteins, tetR family AM442_00240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00240 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00290 PF01066 CDP-alcohol phosphatidyltransferase AM442_00295 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AM442_00315 PF00056 lactate/malate dehydrogenase, NAD binding domain AM442_00315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM442_00325 PF01464 Transglycosylase SLT domain AM442_00325 PF10145 Phage-related minor tail protein AM442_00325 PF01551 Peptidase family M23 AM442_00330 PF04055 Radical SAM superfamily AM442_00330 PF01938 TRAM domain AM442_00330 PF00919 Uncharacterized protein family UPF0004 AM442_00335 PF02562 PhoH-like protein AM442_00340 PF02130 Uncharacterized protein family UPF0054 AM442_00365 PF03358 NADPH-dependent FMN reductase AM442_00370 PF03631 Virulence factor BrkB AM442_00375 PF00892 EamA-like transporter family AM442_00385 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM442_00430 PF17876 Cold shock domain AM442_00430 PF08461 Ribonuclease R winged-helix domain AM442_00430 PF08206 Ribonuclease B OB domain AM442_00430 PF00575 S1 RNA binding domain AM442_00430 PF00773 RNB domain AM442_00435 PF01432 Peptidase family M3 AM442_00440 PF09526 Probable metal-binding protein (DUF2387) AM442_00470 PF03937 Flavinator of succinate dehydrogenase AM442_00475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00475 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00480 PF00743 Flavin-binding monooxygenase-like AM442_00485 PF01196 Ribosomal protein L17 AM442_00490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM442_00490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM442_00490 PF01000 RNA polymerase Rpb3/RpoA insert domain AM442_00495 PF01479 S4 domain AM442_00495 PF00163 Ribosomal protein S4/S9 N-terminal domain AM442_00500 PF00411 Ribosomal protein S11 AM442_00505 PF00416 Ribosomal protein S13/S18 AM442_00510 PF00444 Ribosomal protein L36 AM442_00515 PF00344 SecY translocase AM442_00520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM442_00525 PF00327 Ribosomal protein L30p/L7e AM442_00530 PF00333 Ribosomal protein S5, N-terminal domain AM442_00530 PF03719 Ribosomal protein S5, C-terminal domain AM442_00535 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM442_00540 PF00347 Ribosomal protein L6 AM442_00545 PF00410 Ribosomal protein S8 AM442_00550 PF00253 Ribosomal protein S14p/S29e AM442_00555 PF00281 Ribosomal protein L5 AM442_00555 PF00673 ribosomal L5P family C-terminus AM442_00560 PF00467 KOW motif AM442_00560 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM442_00565 PF00238 Ribosomal protein L14p/L23e AM442_00570 PF00366 Ribosomal protein S17 AM442_00575 PF00831 Ribosomal L29 protein AM442_00580 PF00252 Ribosomal protein L16p/L10e AM442_00585 PF00189 Ribosomal protein S3, C-terminal domain AM442_00585 PF07650 KH domain AM442_00590 PF00237 Ribosomal protein L22p/L17e AM442_00595 PF00203 Ribosomal protein S19 AM442_00600 PF00181 Ribosomal Proteins L2, RNA binding domain AM442_00600 PF03947 Ribosomal Proteins L2, C-terminal domain AM442_00605 PF00276 Ribosomal protein L23 AM442_00610 PF00573 Ribosomal protein L4/L1 family AM442_00615 PF00297 Ribosomal protein L3 AM442_00620 PF00338 Ribosomal protein S10p/S20e AM442_00625 PF00117 Glutamine amidotransferase class-I AM442_00630 PF01053 Cys/Met metabolism PLP-dependent enzyme AM442_00635 PF05872 Bacterial protein of unknown function (DUF853) AM442_00645 PF00042 Globin AM442_00645 PF00175 Oxidoreductase NAD-binding domain AM442_00645 PF00970 Oxidoreductase FAD-binding domain AM442_00650 PF02082 Transcriptional regulator AM442_00655 PF01926 50S ribosome-binding GTPase AM442_00665 PF00375 Sodium:dicarboxylate symporter family AM442_00675 PF01553 Acyltransferase AM442_00690 PF00270 DEAD/DEAH box helicase AM442_00690 PF00271 Helicase conserved C-terminal domain AM442_00690 PF17191 RecG wedge domain AM442_00695 PF00156 Phosphoribosyl transferase domain AM442_00700 PF00293 NUDIX domain AM442_00705 PF03641 Possible lysine decarboxylase AM442_00710 PF01544 CorA-like Mg2+ transporter protein AM442_00720 PF05494 MlaC protein AM442_00730 PF02405 Permease MlaE AM442_00735 PF00005 ABC transporter AM442_00740 PF00270 DEAD/DEAH box helicase AM442_00740 PF12343 Cold shock protein DEAD box A AM442_00740 PF00271 Helicase conserved C-terminal domain AM442_00740 PF03880 DbpA RNA binding domain AM442_00745 PF00459 Inositol monophosphatase family AM442_00750 PF02780 Transketolase, C-terminal domain AM442_00750 PF02779 Transketolase, pyrimidine binding domain AM442_00750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM442_00755 PF00925 GTP cyclohydrolase II AM442_00760 PF01218 Coproporphyrinogen III oxidase AM442_00765 PF08501 Shikimate dehydrogenase substrate binding domain AM442_00765 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AM442_00765 PF01488 Shikimate / quinate 5-dehydrogenase AM442_00775 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM442_00775 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00785 PF04024 PspC domain AM442_00790 PF00571 CBS domain AM442_00815 PF02091 Glycyl-tRNA synthetase alpha subunit AM442_00820 PF05746 DALR anticodon binding domain AM442_00820 PF02092 Glycyl-tRNA synthetase beta subunit AM442_00825 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AM442_00855 PF03466 LysR substrate binding domain AM442_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_00885 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM442_00890 PF04996 Succinylarginine dihydrolase AM442_00895 PF00171 Aldehyde dehydrogenase family AM442_00900 PF04958 Arginine N-succinyltransferase beta subunit AM442_00905 PF00202 Aminotransferase class-III AM442_00910 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM442_00910 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM442_00915 PF00324 Amino acid permease AM442_00925 PF08241 Methyltransferase domain AM442_00945 PF13614 AAA domain AM442_00950 PF01594 AI-2E family transporter AM442_00955 PF00080 Copper/zinc superoxide dismutase (SODC) AM442_00960 PF12805 FUSC-like inner membrane protein yccS AM442_00965 PF07690 Major Facilitator Superfamily AM442_00975 PF02525 Flavodoxin-like fold AM442_00980 PF03992 Antibiotic biosynthesis monooxygenase AM442_01005 PF01565 FAD binding domain AM442_01005 PF02913 FAD linked oxidases, C-terminal domain AM442_01010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM442_01010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM442_01015 PF00892 EamA-like transporter family AM442_01020 PF00892 EamA-like transporter family AM442_01030 PF01925 Sulfite exporter TauE/SafE AM442_01035 PF09157 Pseudouridine synthase II TruB, C-terminal AM442_01035 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM442_01035 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM442_01040 PF03280 Proteobacterial lipase chaperone protein AM442_01045 PF00561 alpha/beta hydrolase fold AM442_01050 PF01245 Ribosomal protein L19 AM442_01055 PF01746 tRNA (Guanine-1)-methyltransferase AM442_01060 PF01782 RimM N-terminal domain AM442_01060 PF05239 PRC-barrel domain AM442_01065 PF00886 Ribosomal protein S16 AM442_01105 PF02401 LytB protein AM442_01110 PF00625 Guanylate kinase AM442_01115 PF01192 RNA polymerase Rpb6 AM442_01125 PF13291 ACT domain AM442_01125 PF02824 TGS domain AM442_01125 PF04607 Region found in RelA / SpoT proteins AM442_01130 PF01042 Endoribonuclease L-PSP AM442_01135 PF04324 BFD-like [2Fe-2S] binding domain AM442_01140 PF00210 Ferritin-like domain AM442_01145 PF15864 Protein glycosylation ligase AM442_01145 PF04932 O-Antigen ligase AM442_01145 PF11846 Virulence factor membrane-bound polymerase, C-terminal AM442_01150 PF00114 Pilin (bacterial filament) AM442_01150 PF07963 Prokaryotic N-terminal methylation motif AM442_01160 PF04536 TPM domain AM442_01165 PF04011 LemA family AM442_01175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_01175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM442_01180 PF04898 Glutamate synthase central domain AM442_01180 PF00310 Glutamine amidotransferases class-II AM442_01180 PF01645 Conserved region in glutamate synthase AM442_01180 PF01493 GXGXG motif AM442_01190 PF01761 3-dehydroquinate synthase AM442_01195 PF01202 Shikimate kinase AM442_01200 PF11741 AMIN domain AM442_01200 PF00263 Bacterial type II and III secretion system protein AM442_01200 PF03958 Bacterial type II/III secretion system short domain AM442_01200 PF07660 Secretin and TonB N terminus short domain AM442_01225 PF17092 Penicillin-binding protein OB-like domain AM442_01225 PF00912 Transglycosylase AM442_01225 PF00905 Penicillin binding protein transpeptidase domain AM442_01230 PF13847 Methyltransferase domain AM442_01240 PF00953 Glycosyl transferase family 4 AM442_01245 PF08245 Mur ligase middle domain AM442_01245 PF02875 Mur ligase family, glutamate ligase domain AM442_01245 PF01225 Mur ligase family, catalytic domain AM442_01250 PF02875 Mur ligase family, glutamate ligase domain AM442_01250 PF08245 Mur ligase middle domain AM442_01250 PF01225 Mur ligase family, catalytic domain AM442_01255 PF03717 Penicillin-binding Protein dimerisation domain AM442_01255 PF00905 Penicillin binding protein transpeptidase domain AM442_01265 PF01795 MraW methylase family AM442_01280 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM442_01295 PF00324 Amino acid permease AM442_01325 PF01545 Cation efflux family AM442_01330 PF00873 AcrB/AcrD/AcrF family AM442_01335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_01335 PF00529 HlyD membrane-fusion protein of T1SS AM442_01355 PF04191 Phospholipid methyltransferase AM442_01380 PF12848 ABC transporter AM442_01380 PF00005 ABC transporter AM442_01385 PF01053 Cys/Met metabolism PLP-dependent enzyme AM442_01390 PF00106 short chain dehydrogenase AM442_01395 PF01740 STAS domain AM442_01395 PF00916 Sulfate permease family AM442_01400 PF00575 S1 RNA binding domain AM442_01400 PF09371 Tex-like protein N-terminal domain AM442_01400 PF16921 Tex protein YqgF-like domain AM442_01400 PF17674 HHH domain AM442_01410 PF00072 Response regulator receiver domain AM442_01410 PF00486 Transcriptional regulatory protein, C terminal AM442_01415 PF00512 His Kinase A (phospho-acceptor) domain AM442_01415 PF00672 HAMP domain AM442_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_01425 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AM442_01425 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AM442_01430 PF00583 Acetyltransferase (GNAT) family AM442_01450 PF00475 Imidazoleglycerol-phosphate dehydratase AM442_01455 PF00117 Glutamine amidotransferase class-I AM442_01470 PF00977 Histidine biosynthesis protein AM442_01485 PF03992 Antibiotic biosynthesis monooxygenase AM442_01500 PF01636 Phosphotransferase enzyme family AM442_01505 PF00977 Histidine biosynthesis protein AM442_01520 PF00230 Major intrinsic protein AM442_01545 PF02705 K+ potassium transporter AM442_01565 PF00809 Pterin binding enzyme AM442_01570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_01570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_01570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_01570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM442_01585 PF13610 DDE domain AM442_01595 PF02525 Flavodoxin-like fold AM442_01605 PF01638 HxlR-like helix-turn-helix AM442_01635 PF12833 Helix-turn-helix domain AM442_01635 PF02311 AraC-like ligand binding domain AM442_01640 PF00248 Aldo/keto reductase family AM442_01660 PF03466 LysR substrate binding domain AM442_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_01665 PF07690 Major Facilitator Superfamily AM442_01675 PF00324 Amino acid permease AM442_01680 PF00171 Aldehyde dehydrogenase family AM442_01695 PF13556 PucR C-terminal helix-turn-helix domain AM442_01695 PF06018 CodY GAF-like domain AM442_01695 PF17853 GGDEF-like domain AM442_01700 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AM442_01700 PF12833 Helix-turn-helix domain AM442_01725 PF01593 Flavin containing amine oxidoreductase AM442_01730 PF05726 Pirin C-terminal cupin domain AM442_01730 PF02678 Pirin AM442_01735 PF00857 Isochorismatase family AM442_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_01745 PF00171 Aldehyde dehydrogenase family AM442_01750 PF00202 Aminotransferase class-III AM442_01755 PF00392 Bacterial regulatory proteins, gntR family AM442_01755 PF00155 Aminotransferase class I and II AM442_01760 PF00324 Amino acid permease AM442_01770 PF03591 AzlC protein AM442_01780 PF00436 Single-strand binding protein family AM442_01785 PF07690 Major Facilitator Superfamily AM442_01795 PF08543 Phosphomethylpyrimidine kinase AM442_01795 PF03070 TENA/THI-4/PQQC family AM442_01795 PF02581 Thiamine monophosphate synthase AM442_01800 PF06942 GlpM protein AM442_01810 PF08240 Alcohol dehydrogenase GroES-like domain AM442_01810 PF00107 Zinc-binding dehydrogenase AM442_01815 PF16925 Tetracyclin repressor-like, C-terminal domain AM442_01815 PF00440 Bacterial regulatory proteins, tetR family AM442_01820 PF00005 ABC transporter AM442_01820 PF17760 UvrA interaction domain AM442_01820 PF17755 UvrA DNA-binding domain AM442_01825 PF17158 Membrane-associated sensor, integral membrane domain AM442_01825 PF00990 Diguanylate cyclase, GGDEF domain AM442_01835 PF02028 BCCT, betaine/carnitine/choline family transporter AM442_01845 PF00474 Sodium:solute symporter family AM442_01850 PF04341 Protein of unknown function, DUF485 AM442_01855 PF01627 Hpt domain AM442_01855 PF00072 Response regulator receiver domain AM442_01855 PF00672 HAMP domain AM442_01855 PF00512 His Kinase A (phospho-acceptor) domain AM442_01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_01865 PF00072 Response regulator receiver domain AM442_01865 PF00196 Bacterial regulatory proteins, luxR family AM442_01870 PF03358 NADPH-dependent FMN reductase AM442_01875 PF00296 Luciferase-like monooxygenase AM442_01880 PF01037 Lrp/AsnC ligand binding domain AM442_01885 PF00857 Isochorismatase family AM442_01890 PF13193 AMP-binding enzyme C-terminal domain AM442_01890 PF16177 Acetyl-coenzyme A synthetase N-terminus AM442_01890 PF00501 AMP-binding enzyme AM442_01900 PF00924 Mechanosensitive ion channel AM442_01905 PF04452 RNA methyltransferase AM442_01910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AM442_01915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_01935 PF06594 Haemolysin-type calcium binding protein related domain AM442_01935 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM442_01950 PF01368 DHH family AM442_01950 PF02272 DHHA1 domain AM442_01950 PF17768 RecJ OB domain AM442_01955 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM442_01955 PF01243 Pyridoxamine 5'-phosphate oxidase AM442_01960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_01960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_01960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_01960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM442_01965 PF00478 IMP dehydrogenase / GMP reductase domain AM442_01965 PF00571 CBS domain AM442_01970 PF03692 Putative zinc- or iron-chelating domain AM442_01975 PF01613 Flavin reductase like domain AM442_01975 PF00258 Flavodoxin AM442_01980 PF07715 TonB-dependent Receptor Plug Domain AM442_01980 PF00593 TonB dependent receptor AM442_01985 PF01169 Uncharacterized protein family UPF0016 AM442_01995 PF00364 Biotin-requiring enzyme AM442_01995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM442_01995 PF02817 e3 binding domain AM442_02000 PF17831 Pyruvate dehydrogenase E1 component middle domain AM442_02000 PF00456 Transketolase, thiamine diphosphate binding domain AM442_02005 PF01551 Peptidase family M23 AM442_02015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM442_02020 PF00091 Tubulin/FtsZ family, GTPase domain AM442_02020 PF12327 FtsZ family, C-terminal domain AM442_02025 PF02491 SHS2 domain inserted in FTSA AM442_02030 PF08478 POTRA domain, FtsQ-type AM442_02030 PF03799 Cell division protein FtsQ AM442_02035 PF01820 D-ala D-ala ligase N-terminus AM442_02035 PF07478 D-ala D-ala ligase C-terminus AM442_02040 PF08245 Mur ligase middle domain AM442_02040 PF02875 Mur ligase family, glutamate ligase domain AM442_02040 PF01225 Mur ligase family, catalytic domain AM442_02045 PF03033 Glycosyltransferase family 28 N-terminal domain AM442_02045 PF04101 Glycosyltransferase family 28 C-terminal domain AM442_02050 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM442_02050 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM442_02065 PF00593 TonB dependent receptor AM442_02065 PF07715 TonB-dependent Receptor Plug Domain AM442_02070 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM442_02095 PF00156 Phosphoribosyl transferase domain AM442_02100 PF03372 Endonuclease/Exonuclease/phosphatase family AM442_02105 PF03960 ArsC family AM442_02115 PF07859 alpha/beta hydrolase fold AM442_02120 PF07694 5TMR of 5TMR-LYT AM442_02120 PF00990 Diguanylate cyclase, GGDEF domain AM442_02165 PF00576 HIUase/Transthyretin family AM442_02170 PF00860 Permease family AM442_02180 PF01494 FAD binding domain AM442_02185 PF03561 Allantoicase repeat AM442_02190 PF04115 Ureidoglycolate lyase AM442_02195 PF00204 DNA gyrase B AM442_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_02195 PF00986 DNA gyrase B subunit, carboxyl terminus AM442_02195 PF01751 Toprim domain AM442_02200 PF05728 Uncharacterised protein family (UPF0227) AM442_02250 PF04717 Type VI secretion system, phage-baseplate injector AM442_02255 PF02600 Disulfide bond formation protein DsbB AM442_02260 PF04262 Glutamate-cysteine ligase AM442_02275 PF04286 Protein of unknown function (DUF445) AM442_02280 PF00155 Aminotransferase class I and II AM442_02285 PF01554 MatE AM442_02290 PF00106 short chain dehydrogenase AM442_02300 PF00486 Transcriptional regulatory protein, C terminal AM442_02300 PF00072 Response regulator receiver domain AM442_02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_02305 PF00512 His Kinase A (phospho-acceptor) domain AM442_02305 PF11808 Phosphate regulon sensor protein PhoR AM442_02305 PF00989 PAS fold AM442_02315 PF02666 Phosphatidylserine decarboxylase AM442_02320 PF00581 Rhodanese-like domain AM442_02325 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AM442_02325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM442_02330 PF02580 D-Tyr-tRNA(Tyr) deacylase AM442_02360 PF00925 GTP cyclohydrolase II AM442_02360 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM442_02365 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM442_02370 PF01029 NusB family AM442_02375 PF02769 AIR synthase related protein, C-terminal domain AM442_02375 PF00586 AIR synthase related protein, N-terminal domain AM442_02380 PF04608 Phosphatidylglycerophosphatase A AM442_02385 PF12804 MobA-like NTP transferase domain AM442_02385 PF14602 Hexapeptide repeat of succinyl-transferase AM442_02385 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_02390 PF01380 SIS domain AM442_02395 PF01177 Asp/Glu/Hydantoin racemase AM442_02410 PF00491 Arginase family AM442_02415 PF01979 Amidohydrolase family AM442_02420 PF00324 Amino acid permease AM442_02425 PF00221 Aromatic amino acid lyase AM442_02430 PF17392 Urocanase C-terminal domain AM442_02430 PF01175 Urocanase Rossmann-like domain AM442_02430 PF17391 Urocanase N-terminal domain AM442_02440 PF05962 HutD AM442_02465 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM442_02465 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM442_02475 PF00324 Amino acid permease AM442_02485 PF02798 Glutathione S-transferase, N-terminal domain AM442_02485 PF14497 Glutathione S-transferase, C-terminal domain AM442_02490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_02500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_02505 PF04463 Protein of unknown function (DUF523) AM442_02510 PF01554 MatE AM442_02515 PF01758 Sodium Bile acid symporter family AM442_02520 PF00857 Isochorismatase family AM442_02525 PF00701 Dihydrodipicolinate synthetase family AM442_02535 PF01259 SAICAR synthetase AM442_02545 PF01226 Formate/nitrite transporter AM442_02550 PF12002 MgsA AAA+ ATPase C terminal AM442_02550 PF16193 AAA C-terminal domain AM442_02550 PF00004 ATPase family associated with various cellular activities (AAA) AM442_02555 PF07995 Glucose / Sorbosone dehydrogenase AM442_02560 PF03692 Putative zinc- or iron-chelating domain AM442_02565 PF07043 Protein of unknown function (DUF1328) AM442_02580 PF14815 NUDIX domain AM442_02580 PF00730 HhH-GPD superfamily base excision DNA repair protein AM442_02580 PF00633 Helix-hairpin-helix motif AM442_02580 PF10576 Iron-sulfur binding domain of endonuclease III AM442_02595 PF03352 Methyladenine glycosylase AM442_02600 PF00107 Zinc-binding dehydrogenase AM442_02600 PF08240 Alcohol dehydrogenase GroES-like domain AM442_02605 PF00155 Aminotransferase class I and II AM442_02605 PF00392 Bacterial regulatory proteins, gntR family AM442_02620 PF03466 LysR substrate binding domain AM442_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_02625 PF00248 Aldo/keto reductase family AM442_02630 PF07690 Major Facilitator Superfamily AM442_02640 PF01113 Dihydrodipicolinate reductase, N-terminus AM442_02640 PF05173 Dihydrodipicolinate reductase, C-terminus AM442_02650 PF00226 DnaJ domain AM442_02650 PF00684 DnaJ central domain AM442_02650 PF01556 DnaJ C terminal domain AM442_02660 PF00873 AcrB/AcrD/AcrF family AM442_02665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_02670 PF08361 MAATS-type transcriptional repressor, C-terminal region AM442_02670 PF00440 Bacterial regulatory proteins, tetR family AM442_02680 PF00860 Permease family AM442_02685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_02685 PF03466 LysR substrate binding domain AM442_02700 PF00920 Dehydratase family AM442_02705 PF02911 Formyl transferase, C-terminal domain AM442_02705 PF00551 Formyl transferase AM442_02710 PF01189 16S rRNA methyltransferase RsmB/F AM442_02710 PF01029 NusB family AM442_02720 PF00209 Sodium:neurotransmitter symporter family AM442_02765 PF00579 tRNA synthetases class I (W and Y) AM442_02770 PF03702 Anhydro-N-acetylmuramic acid kinase AM442_02775 PF00561 alpha/beta hydrolase fold AM442_02780 PF01521 Iron-sulphur cluster biosynthesis AM442_02800 PF12848 ABC transporter AM442_02800 PF00005 ABC transporter AM442_02805 PF09335 SNARE associated Golgi protein AM442_02815 PF00986 DNA gyrase B subunit, carboxyl terminus AM442_02815 PF18053 DNA gyrase B subunit insert domain AM442_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_02815 PF00204 DNA gyrase B AM442_02815 PF01751 Toprim domain AM442_02820 PF02463 RecF/RecN/SMC N terminal domain AM442_02825 PF00712 DNA polymerase III beta subunit, N-terminal domain AM442_02825 PF02768 DNA polymerase III beta subunit, C-terminal domain AM442_02825 PF02767 DNA polymerase III beta subunit, central domain AM442_02830 PF00308 Bacterial dnaA protein AM442_02830 PF08299 Bacterial dnaA protein helix-turn-helix AM442_02830 PF11638 DnaA N-terminal domain AM442_02835 PF00468 Ribosomal protein L34 AM442_02840 PF00825 Ribonuclease P AM442_02845 PF01809 Putative membrane protein insertion efficiency factor AM442_02850 PF14849 YidC periplasmic domain AM442_02850 PF02096 60Kd inner membrane protein AM442_02855 PF01926 50S ribosome-binding GTPase AM442_02855 PF12631 MnmE helical domain AM442_02855 PF10396 GTP-binding protein TrmE N-terminus AM442_02860 PF02583 Metal-sensitive transcriptional repressor AM442_02865 PF16916 Dimerisation domain of Zinc Transporter AM442_02865 PF01545 Cation efflux family AM442_02870 PF10411 Disulfide bond isomerase protein N-terminus AM442_02870 PF13098 Thioredoxin-like domain AM442_02880 PF00156 Phosphoribosyl transferase domain AM442_02885 PF01979 Amidohydrolase family AM442_02890 PF00355 Rieske [2Fe-2S] domain AM442_02895 PF03738 Glutathionylspermidine synthase preATP-grasp AM442_02905 PF03741 Integral membrane protein TerC family AM442_02910 PF01569 PAP2 superfamily AM442_02920 PF01225 Mur ligase family, catalytic domain AM442_02920 PF02875 Mur ligase family, glutamate ligase domain AM442_02920 PF08245 Mur ligase middle domain AM442_02935 PF00731 AIR carboxylase AM442_02940 PF02222 ATP-grasp domain AM442_02940 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM442_02945 PF13406 Transglycosylase SLT domain AM442_02965 PF00012 Hsp70 protein AM442_02970 PF01025 GrpE AM442_02995 PF07859 alpha/beta hydrolase fold AM442_03000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM442_03040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_03045 PF01252 Signal peptidase (SPase) II AM442_03050 PF08264 Anticodon-binding domain of tRNA AM442_03050 PF00133 tRNA synthetases class I (I, L, M and V) AM442_03050 PF06827 Zinc finger found in FPG and IleRS AM442_03055 PF01687 Riboflavin kinase AM442_03055 PF06574 FAD synthetase AM442_03065 PF01048 Phosphorylase superfamily AM442_03070 PF00440 Bacterial regulatory proteins, tetR family AM442_03070 PF08362 YcdC-like protein, C-terminal region AM442_03075 PF00005 ABC transporter AM442_03080 PF00528 Binding-protein-dependent transport system inner membrane component AM442_03085 PF00296 Luciferase-like monooxygenase AM442_03090 PF09084 NMT1/THI5 like AM442_03095 PF09084 NMT1/THI5 like AM442_03100 PF00583 Acetyltransferase (GNAT) family AM442_03100 PF00696 Amino acid kinase family AM442_03115 PF00106 short chain dehydrogenase AM442_03120 PF13419 Haloacid dehalogenase-like hydrolase AM442_03130 PF01323 DSBA-like thioredoxin domain AM442_03135 PF13737 Transposase DDE domain AM442_03140 PF00440 Bacterial regulatory proteins, tetR family AM442_03145 PF00175 Oxidoreductase NAD-binding domain AM442_03150 PF00487 Fatty acid desaturase AM442_03155 PF03725 3' exoribonuclease family, domain 2 AM442_03155 PF01138 3' exoribonuclease family, domain 1 AM442_03165 PF05506 Domain of unknown function (DUF756) AM442_03165 PF04185 Phosphoesterase family AM442_03175 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM442_03175 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM442_03180 PF01510 N-acetylmuramoyl-L-alanine amidase AM442_03185 PF03023 Lipid II flippase MurJ AM442_03190 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM442_03190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_03195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM442_03195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_03200 PF13807 G-rich domain on putative tyrosine kinase AM442_03200 PF13614 AAA domain AM442_03200 PF02706 Chain length determinant protein AM442_03205 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM442_03210 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AM442_03210 PF02563 Polysaccharide biosynthesis/export protein AM442_03210 PF10531 SLBB domain AM442_03215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM442_03215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM442_03215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM442_03220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM442_03220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM442_03225 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_03230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM442_03240 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_03240 PF14602 Hexapeptide repeat of succinyl-transferase AM442_03240 PF12464 Maltose acetyltransferase AM442_03270 PF00534 Glycosyl transferases group 1 AM442_03275 PF00535 Glycosyl transferase family 2 AM442_03280 PF02397 Bacterial sugar transferase AM442_03285 PF00483 Nucleotidyl transferase AM442_03290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM442_03290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM442_03290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM442_03295 PF00342 Phosphoglucose isomerase AM442_03300 PF16363 GDP-mannose 4,6 dehydratase AM442_03330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_03330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_03330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM442_03330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_03335 PF02652 L-lactate permease AM442_03340 PF00392 Bacterial regulatory proteins, gntR family AM442_03340 PF07729 FCD domain AM442_03345 PF01070 FMN-dependent dehydrogenase AM442_03350 PF01565 FAD binding domain AM442_03350 PF09330 D-lactate dehydrogenase, membrane binding AM442_03355 PF00155 Aminotransferase class I and II AM442_03365 PF00392 Bacterial regulatory proteins, gntR family AM442_03365 PF07729 FCD domain AM442_03375 PF00285 Citrate synthase, C-terminal domain AM442_03380 PF00694 Aconitase C-terminal domain AM442_03380 PF00330 Aconitase family (aconitate hydratase) AM442_03400 PF00293 NUDIX domain AM442_03430 PF02801 Beta-ketoacyl synthase, C-terminal domain AM442_03430 PF00109 Beta-ketoacyl synthase, N-terminal domain AM442_03445 PF00849 RNA pseudouridylate synthase AM442_03460 PF00593 TonB dependent receptor AM442_03460 PF07715 TonB-dependent Receptor Plug Domain AM442_03470 PF01037 Lrp/AsnC ligand binding domain AM442_03475 PF01266 FAD dependent oxidoreductase AM442_03480 PF01168 Alanine racemase, N-terminal domain AM442_03480 PF00842 Alanine racemase, C-terminal domain AM442_03485 PF01042 Endoribonuclease L-PSP AM442_03490 PF00324 Amino acid permease AM442_03495 PF00324 Amino acid permease AM442_03505 PF00171 Aldehyde dehydrogenase family AM442_03510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM442_03510 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM442_03515 PF13193 AMP-binding enzyme C-terminal domain AM442_03515 PF00501 AMP-binding enzyme AM442_03520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_03520 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_03520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_03525 PF00378 Enoyl-CoA hydratase/isomerase AM442_03530 PF00378 Enoyl-CoA hydratase/isomerase AM442_03535 PF07690 Major Facilitator Superfamily AM442_03535 PF00083 Sugar (and other) transporter AM442_03540 PF00765 Autoinducer synthase AM442_03550 PF00196 Bacterial regulatory proteins, luxR family AM442_03550 PF03472 Autoinducer binding domain AM442_03560 PF00501 AMP-binding enzyme AM442_03565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_03565 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_03565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_03570 PF08659 KR domain AM442_03570 PF02801 Beta-ketoacyl synthase, C-terminal domain AM442_03570 PF00550 Phosphopantetheine attachment site AM442_03570 PF00109 Beta-ketoacyl synthase, N-terminal domain AM442_03570 PF14765 Polyketide synthase dehydratase AM442_03570 PF16197 Ketoacyl-synthetase C-terminal extension AM442_03575 PF00668 Condensation domain AM442_03575 PF13193 AMP-binding enzyme C-terminal domain AM442_03575 PF00501 AMP-binding enzyme AM442_03575 PF00550 Phosphopantetheine attachment site AM442_03575 PF00975 Thioesterase domain AM442_03590 PF16363 GDP-mannose 4,6 dehydratase AM442_03595 PF01648 4'-phosphopantetheinyl transferase superfamily AM442_03610 PF01722 BolA-like protein AM442_03620 PF13614 AAA domain AM442_03635 PF09335 SNARE associated Golgi protein AM442_03640 PF07681 DoxX AM442_03645 PF04286 Protein of unknown function (DUF445) AM442_03650 PF00958 GMP synthase C terminal domain AM442_03650 PF02540 NAD synthase AM442_03650 PF00117 Glutamine amidotransferase class-I AM442_03655 PF13427 Domain of unknown function (DUF4111) AM442_03655 PF01909 Nucleotidyltransferase domain AM442_03660 PF03551 Transcriptional regulator PadR-like family AM442_03670 PF05726 Pirin C-terminal cupin domain AM442_03670 PF02678 Pirin AM442_03690 PF05746 DALR anticodon binding domain AM442_03690 PF00750 tRNA synthetases class I (R) AM442_03690 PF03485 Arginyl tRNA synthetase N terminal domain AM442_03695 PF00390 Malic enzyme, N-terminal domain AM442_03695 PF03949 Malic enzyme, NAD binding domain AM442_03700 PF04261 Dyp-type peroxidase family AM442_03705 PF01810 LysE type translocator AM442_03710 PF00950 ABC 3 transport family AM442_03715 PF00005 ABC transporter AM442_03735 PF00119 ATP synthase A chain AM442_03740 PF00137 ATP synthase subunit C AM442_03745 PF00430 ATP synthase B/B' CF(0) AM442_03750 PF00213 ATP synthase delta (OSCP) subunit AM442_03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM442_03755 PF00306 ATP synthase alpha/beta chain, C terminal domain AM442_03755 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM442_03760 PF00231 ATP synthase AM442_03765 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM442_03765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM442_03770 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM442_03780 PF00255 Glutathione peroxidase AM442_03790 PF07690 Major Facilitator Superfamily AM442_03795 PF00440 Bacterial regulatory proteins, tetR family AM442_03800 PF00892 EamA-like transporter family AM442_03805 PF01300 Telomere recombination AM442_03810 PF17782 DprA winged helix domain AM442_03810 PF02481 DNA recombination-mediator protein A AM442_03820 PF01327 Polypeptide deformylase AM442_03845 PF00440 Bacterial regulatory proteins, tetR family AM442_03880 PF00291 Pyridoxal-phosphate dependent enzyme AM442_03890 PF03358 NADPH-dependent FMN reductase AM442_03910 PF08497 Radical SAM N-terminal AM442_03910 PF11842 Domain of unknown function (DUF3362) AM442_03910 PF04055 Radical SAM superfamily AM442_03925 PF11798 IMS family HHH motif AM442_03925 PF11799 impB/mucB/samB family C-terminal domain AM442_03925 PF00817 impB/mucB/samB family AM442_03935 PF07690 Major Facilitator Superfamily AM442_03940 PF03641 Possible lysine decarboxylase AM442_03945 PF03471 Transporter associated domain AM442_03945 PF03741 Integral membrane protein TerC family AM442_03950 PF02810 SEC-C motif AM442_03955 PF03458 UPF0126 domain AM442_03960 PF07690 Major Facilitator Superfamily AM442_03965 PF03989 DNA gyrase C-terminal domain, beta-propeller AM442_03965 PF00521 DNA gyrase/topoisomerase IV, subunit A AM442_03970 PF00501 AMP-binding enzyme AM442_03970 PF13193 AMP-binding enzyme C-terminal domain AM442_03985 PF00719 Inorganic pyrophosphatase AM442_03990 PF03573 outer membrane porin, OprD family AM442_04000 PF00701 Dihydrodipicolinate synthetase family AM442_04010 PF00392 Bacterial regulatory proteins, gntR family AM442_04010 PF00155 Aminotransferase class I and II AM442_04015 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM442_04015 PF01078 Magnesium chelatase, subunit ChlI AM442_04025 PF00665 Integrase core domain AM442_04060 PF04945 YHS domain AM442_04065 PF00672 HAMP domain AM442_04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04065 PF00512 His Kinase A (phospho-acceptor) domain AM442_04070 PF00486 Transcriptional regulatory protein, C terminal AM442_04070 PF00072 Response regulator receiver domain AM442_04080 PF07732 Multicopper oxidase AM442_04080 PF07731 Multicopper oxidase AM442_04080 PF00394 Multicopper oxidase AM442_04090 PF13411 MerR HTH family regulatory protein AM442_04095 PF01545 Cation efflux family AM442_04105 PF07664 Ferrous iron transport protein B C terminus AM442_04105 PF02421 Ferrous iron transport protein B AM442_04105 PF07670 Nucleoside recognition AM442_04120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_04125 PF00873 AcrB/AcrD/AcrF family AM442_04150 PF00899 ThiF family AM442_04150 PF14461 Prokaryotic E2 family B AM442_04165 PF00149 Calcineurin-like phosphoesterase AM442_04185 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM442_04185 PF01078 Magnesium chelatase, subunit ChlI AM442_04195 PF00543 Nitrogen regulatory protein P-II AM442_04200 PF00909 Ammonium Transporter Family AM442_04205 PF03477 ATP cone domain AM442_04210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM442_04210 PF01872 RibD C-terminal domain AM442_04220 PF00677 Lumazine binding domain AM442_04240 PF00883 Cytosol aminopeptidase family, catalytic domain AM442_04240 PF02789 Cytosol aminopeptidase family, N-terminal domain AM442_04250 PF03739 Lipopolysaccharide export system permease LptF/LptG AM442_04255 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM442_04255 PF01676 Metalloenzyme superfamily AM442_04260 PF00595 PDZ domain AM442_04260 PF03572 Peptidase family S41 AM442_04265 PF00158 Sigma-54 interaction domain AM442_04265 PF00072 Response regulator receiver domain AM442_04265 PF02954 Bacterial regulatory protein, Fis family AM442_04270 PF00512 His Kinase A (phospho-acceptor) domain AM442_04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04275 PF00196 Bacterial regulatory proteins, luxR family AM442_04275 PF00072 Response regulator receiver domain AM442_04280 PF00768 D-alanyl-D-alanine carboxypeptidase AM442_04285 PF00291 Pyridoxal-phosphate dependent enzyme AM442_04290 PF00742 Homoserine dehydrogenase AM442_04290 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_04290 PF01842 ACT domain AM442_04295 PF13098 Thioredoxin-like domain AM442_04295 PF10411 Disulfide bond isomerase protein N-terminus AM442_04300 PF00589 Phage integrase family AM442_04300 PF02899 Phage integrase, N-terminal SAM-like domain AM442_04310 PF07670 Nucleoside recognition AM442_04310 PF07664 Ferrous iron transport protein B C terminus AM442_04310 PF02421 Ferrous iron transport protein B AM442_04320 PF02875 Mur ligase family, glutamate ligase domain AM442_04320 PF08245 Mur ligase middle domain AM442_04325 PF01098 Cell cycle protein AM442_04330 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM442_04335 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM442_04340 PF00149 Calcineurin-like phosphoesterase AM442_04345 PF00293 NUDIX domain AM442_04350 PF13667 ThiC-associated domain AM442_04350 PF01964 Radical SAM ThiC family AM442_04365 PF00892 EamA-like transporter family AM442_04370 PF02321 Outer membrane efflux protein AM442_04375 PF01895 PhoU domain AM442_04380 PF04362 Bacterial Fe(2+) trafficking AM442_04385 PF00206 Lyase AM442_04385 PF14698 Argininosuccinate lyase C-terminal AM442_04390 PF07694 5TMR of 5TMR-LYT AM442_04390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04390 PF06580 Histidine kinase AM442_04395 PF00072 Response regulator receiver domain AM442_04395 PF04397 LytTr DNA-binding domain AM442_04400 PF03900 Porphobilinogen deaminase, C-terminal domain AM442_04400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM442_04425 PF00816 H-NS histone family AM442_04440 PF03958 Bacterial type II/III secretion system short domain AM442_04440 PF00263 Bacterial type II and III secretion system protein AM442_04445 PF00498 FHA domain AM442_04445 PF12401 Protein of unknown function (DUF2662) AM442_04450 PF13419 Haloacid dehalogenase-like hydrolase AM442_04455 PF04715 Anthranilate synthase component I, N terminal region AM442_04455 PF00425 chorismate binding enzyme AM442_04480 PF03143 Elongation factor Tu C-terminal domain AM442_04480 PF00009 Elongation factor Tu GTP binding domain AM442_04480 PF03144 Elongation factor Tu domain 2 AM442_04490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM442_04495 PF00467 KOW motif AM442_04495 PF02357 Transcription termination factor nusG AM442_04500 PF00298 Ribosomal protein L11, RNA binding domain AM442_04500 PF03946 Ribosomal protein L11, N-terminal domain AM442_04505 PF00687 Ribosomal protein L1p/L10e family AM442_04510 PF00466 Ribosomal protein L10 AM442_04515 PF16320 Ribosomal protein L7/L12 dimerisation domain AM442_04515 PF00542 Ribosomal protein L7/L12 C-terminal domain AM442_04520 PF04563 RNA polymerase beta subunit AM442_04520 PF04560 RNA polymerase Rpb2, domain 7 AM442_04520 PF04565 RNA polymerase Rpb2, domain 3 AM442_04520 PF04561 RNA polymerase Rpb2, domain 2 AM442_04520 PF10385 RNA polymerase beta subunit external 1 domain AM442_04520 PF00562 RNA polymerase Rpb2, domain 6 AM442_04525 PF04997 RNA polymerase Rpb1, domain 1 AM442_04525 PF05000 RNA polymerase Rpb1, domain 4 AM442_04525 PF00623 RNA polymerase Rpb1, domain 2 AM442_04525 PF04983 RNA polymerase Rpb1, domain 3 AM442_04525 PF04998 RNA polymerase Rpb1, domain 5 AM442_04545 PF00561 alpha/beta hydrolase fold AM442_04550 PF13726 Na+-H+ antiporter family AM442_04550 PF03553 Na+/H+ antiporter family AM442_04565 PF00183 Hsp90 protein AM442_04565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04580 PF01323 DSBA-like thioredoxin domain AM442_04590 PF09278 MerR, DNA binding AM442_04590 PF00376 MerR family regulatory protein AM442_04605 PF00108 Thiolase, N-terminal domain AM442_04605 PF02803 Thiolase, C-terminal domain AM442_04610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_04610 PF00378 Enoyl-CoA hydratase/isomerase AM442_04610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_04640 PF01541 GIY-YIG catalytic domain AM442_04640 PF02151 UvrB/uvrC motif AM442_04640 PF08459 UvrC Helix-hairpin-helix N-terminal AM442_04650 PF01066 CDP-alcohol phosphatidyltransferase AM442_04655 PF12833 Helix-turn-helix domain AM442_04655 PF02805 Metal binding domain of Ada AM442_04655 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM442_04655 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM442_04680 PF13533 Biotin-lipoyl like AM442_04685 PF03652 Holliday junction resolvase AM442_04690 PF02622 Uncharacterized ACR, COG1678 AM442_04695 PF02463 RecF/RecN/SMC N terminal domain AM442_04705 PF06865 Pyrimidine/purine nucleoside phosphorylase AM442_04710 PF00588 SpoU rRNA Methylase family AM442_04710 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM442_04720 PF01121 Dephospho-CoA kinase AM442_04725 PF01478 Type IV leader peptidase family AM442_04725 PF06750 Bacterial Peptidase A24 N-terminal domain AM442_04730 PF00482 Type II secretion system (T2SS), protein F AM442_04735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM442_04735 PF00437 Type II/IV secretion system protein AM442_04740 PF00121 Triosephosphate isomerase AM442_04745 PF03840 Preprotein translocase SecG subunit AM442_04765 PF02576 RimP N-terminal domain AM442_04765 PF17384 RimP C-terminal SH3 domain AM442_04770 PF08529 NusA N-terminal domain AM442_04770 PF00575 S1 RNA binding domain AM442_04770 PF13184 NusA-like KH domain AM442_04775 PF00009 Elongation factor Tu GTP binding domain AM442_04775 PF04760 Translation initiation factor IF-2, N-terminal region AM442_04775 PF08364 Bacterial translation initiation factor IF-2 associated region AM442_04775 PF11987 Translation-initiation factor 2 AM442_04780 PF02033 Ribosome-binding factor A AM442_04790 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AM442_04800 PF00361 Proton-conducting membrane transporter AM442_04805 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM442_04810 PF13244 Domain of unknown function (DUF4040) AM442_04810 PF00361 Proton-conducting membrane transporter AM442_04810 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AM442_04810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM442_04825 PF01502 Phosphoribosyl-AMP cyclohydrolase AM442_04830 PF01494 FAD binding domain AM442_04835 PF03109 ABC1 family AM442_04845 PF01209 ubiE/COQ5 methyltransferase family AM442_04855 PF03976 Polyphosphate kinase 2 (PPK2) AM442_04865 PF17946 RecC C-terminal domain AM442_04870 PF12705 PD-(D/E)XK nuclease superfamily AM442_04870 PF00580 UvrD/REP helicase N-terminal domain AM442_04870 PF13361 UvrD-like helicase C-terminal domain AM442_04875 PF13538 UvrD-like helicase C-terminal domain AM442_04885 PF00312 Ribosomal protein S15 AM442_04890 PF01138 3' exoribonuclease family, domain 1 AM442_04890 PF03725 3' exoribonuclease family, domain 2 AM442_04890 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM442_04890 PF00575 S1 RNA binding domain AM442_04890 PF00013 KH domain AM442_04895 PF01544 CorA-like Mg2+ transporter protein AM442_04905 PF01556 DnaJ C terminal domain AM442_04905 PF00226 DnaJ domain AM442_04915 PF01430 Hsp33 protein AM442_04920 PF02254 TrkA-N domain AM442_04920 PF00999 Sodium/hydrogen exchanger family AM442_04925 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM442_04925 PF00271 Helicase conserved C-terminal domain AM442_04925 PF18074 Primosomal protein N C-terminal domain AM442_04925 PF00270 DEAD/DEAH box helicase AM442_04925 PF17764 3′ DNA-binding domain (3′BD) AM442_04930 PF00482 Type II secretion system (T2SS), protein F AM442_04935 PF08334 Type II secretion system (T2SS), protein G AM442_04935 PF07963 Prokaryotic N-terminal methylation motif AM442_04950 PF01588 Putative tRNA binding domain AM442_04955 PF00795 Carbon-nitrogen hydrolase AM442_04960 PF00571 CBS domain AM442_04960 PF03471 Transporter associated domain AM442_04965 PF01206 Sulfurtransferase TusA AM442_04980 PF01177 Asp/Glu/Hydantoin racemase AM442_04990 PF00762 Ferrochelatase AM442_04995 PF00753 Metallo-beta-lactamase superfamily AM442_05000 PF03884 DNA gyrase inhibitor YacG AM442_05020 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM442_05035 PF01197 Ribosomal protein L31 AM442_05040 PF03109 ABC1 family AM442_05045 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_05045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_05050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_05050 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_05050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_05055 PF01554 MatE AM442_05065 PF04055 Radical SAM superfamily AM442_05065 PF06969 HemN C-terminal domain AM442_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05075 PF03466 LysR substrate binding domain AM442_05090 PF13193 AMP-binding enzyme C-terminal domain AM442_05090 PF00501 AMP-binding enzyme AM442_05095 PF00575 S1 RNA binding domain AM442_05095 PF12111 Polyribonucleotide phosphorylase C terminal AM442_05095 PF10150 Ribonuclease E/G family AM442_05105 PF01479 S4 domain AM442_05105 PF00849 RNA pseudouridylate synthase AM442_05110 PF13419 Haloacid dehalogenase-like hydrolase AM442_05115 PF08279 HTH domain AM442_05115 PF13280 WYL domain AM442_05120 PF02798 Glutathione S-transferase, N-terminal domain AM442_05130 PF03466 LysR substrate binding domain AM442_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05135 PF12706 Beta-lactamase superfamily domain AM442_05140 PF00141 Peroxidase AM442_05145 PF00391 PEP-utilising enzyme, mobile domain AM442_05145 PF05524 PEP-utilising enzyme, N-terminal AM442_05145 PF02896 PEP-utilising enzyme, TIM barrel domain AM442_05145 PF01590 GAF domain AM442_05150 PF00293 NUDIX domain AM442_05170 PF03466 LysR substrate binding domain AM442_05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05180 PF00330 Aconitase family (aconitate hydratase) AM442_05185 PF00694 Aconitase C-terminal domain AM442_05195 PF00180 Isocitrate/isopropylmalate dehydrogenase AM442_05210 PF01176 Translation initiation factor 1A / IF-1 AM442_05220 PF01416 tRNA pseudouridine synthase AM442_05240 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM442_05240 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM442_05250 PF00375 Sodium:dicarboxylate symporter family AM442_05260 PF03279 Bacterial lipid A biosynthesis acyltransferase AM442_05265 PF01810 LysE type translocator AM442_05280 PF00107 Zinc-binding dehydrogenase AM442_05280 PF08240 Alcohol dehydrogenase GroES-like domain AM442_05285 PF01638 HxlR-like helix-turn-helix AM442_05295 PF08272 Topoisomerase I zinc-ribbon-like AM442_05295 PF01131 DNA topoisomerase AM442_05295 PF01751 Toprim domain AM442_05295 PF01396 Topoisomerase DNA binding C4 zinc finger AM442_05310 PF00580 UvrD/REP helicase N-terminal domain AM442_05310 PF13361 UvrD-like helicase C-terminal domain AM442_05315 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM442_05335 PF00999 Sodium/hydrogen exchanger family AM442_05335 PF02254 TrkA-N domain AM442_05340 PF00471 Ribosomal protein L33 AM442_05345 PF00830 Ribosomal L28 family AM442_05350 PF00171 Aldehyde dehydrogenase family AM442_05360 PF00551 Formyl transferase AM442_05360 PF01842 ACT domain AM442_05370 PF01618 MotA/TolQ/ExbB proton channel family AM442_05380 PF01625 Peptide methionine sulfoxide reductase AM442_05390 PF00186 Dihydrofolate reductase AM442_05395 PF00303 Thymidylate synthase AM442_05410 PF01790 Prolipoprotein diacylglyceryl transferase AM442_05430 PF00902 Sec-independent protein translocase protein (TatC) AM442_05435 PF02416 mttA/Hcf106 family AM442_05440 PF02416 mttA/Hcf106 family AM442_05450 PF01725 Ham1 family AM442_05460 PF07021 Methionine biosynthesis protein MetW AM442_05460 PF00561 alpha/beta hydrolase fold AM442_05465 PF00561 alpha/beta hydrolase fold AM442_05470 PF00682 HMGL-like AM442_05470 PF08502 LeuA allosteric (dimerisation) domain AM442_05475 PF18331 PKHD-type hydroxylase C-terminal domain AM442_05475 PF13640 2OG-Fe(II) oxygenase superfamily AM442_05480 PF07715 TonB-dependent Receptor Plug Domain AM442_05480 PF00593 TonB dependent receptor AM442_05485 PF05698 Bacterial trigger factor protein (TF) C-terminus AM442_05485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_05485 PF05697 Bacterial trigger factor protein (TF) AM442_05490 PF00574 Clp protease AM442_05495 PF06689 ClpX C4-type zinc finger AM442_05495 PF07724 AAA domain (Cdc48 subfamily) AM442_05495 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_05510 PF05681 Fumarate hydratase (Fumerase) AM442_05510 PF05683 Fumarase C-terminus AM442_05515 PF01515 Phosphate acetyl/butaryl transferase AM442_05515 PF07085 DRTGG domain AM442_05520 PF00871 Acetokinase family AM442_05530 PF06594 Haemolysin-type calcium binding protein related domain AM442_05530 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM442_05545 PF17074 Darcynin, domain of unknown function AM442_05580 PF02567 Phenazine biosynthesis-like protein AM442_05600 PF00920 Dehydratase family AM442_05605 PF01081 KDPG and KHG aldolase AM442_05610 PF02447 GntP family permease AM442_05615 PF01202 Shikimate kinase AM442_05620 PF00171 Aldehyde dehydrogenase family AM442_05625 PF00171 Aldehyde dehydrogenase family AM442_05630 PF00561 alpha/beta hydrolase fold AM442_05640 PF00933 Glycosyl hydrolase family 3 N terminal domain AM442_05645 PF11818 C-terminal domain of tail specific protease (DUF3340) AM442_05645 PF03572 Peptidase family S41 AM442_05645 PF17804 Tail specific protease N-terminal domain AM442_05645 PF00595 PDZ domain AM442_05650 PF13439 Glycosyltransferase Family 4 AM442_05650 PF00534 Glycosyl transferases group 1 AM442_05655 PF01569 PAP2 superfamily AM442_05660 PF04384 Iron-sulphur cluster assembly AM442_05665 PF00334 Nucleoside diphosphate kinase AM442_05670 PF04055 Radical SAM superfamily AM442_05680 PF13464 Domain of unknown function (DUF4115) AM442_05685 PF04551 GcpE protein AM442_05690 PF13393 Histidyl-tRNA synthetase AM442_05690 PF03129 Anticodon binding domain AM442_05700 PF13360 PQQ-like domain AM442_05705 PF01926 50S ribosome-binding GTPase AM442_05705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM442_05715 PF02556 Preprotein translocase subunit SecB AM442_05720 PF00462 Glutaredoxin AM442_05730 PF03193 RsgA GTPase AM442_05735 PF00929 Exonuclease AM442_05750 PF02321 Outer membrane efflux protein AM442_05755 PF02687 FtsX-like permease family AM442_05755 PF12704 MacB-like periplasmic core domain AM442_05755 PF00005 ABC transporter AM442_05760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_05775 PF13603 Leucyl-tRNA synthetase, Domain 2 AM442_05775 PF09334 tRNA synthetases class I (M) AM442_05775 PF00133 tRNA synthetases class I (I, L, M and V) AM442_05775 PF08264 Anticodon-binding domain of tRNA AM442_05790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_05790 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_05790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_05795 PF10369 Small subunit of acetolactate synthase AM442_05800 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM442_05800 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM442_05805 PF03707 Bacterial signalling protein N terminal repeat AM442_05805 PF00990 Diguanylate cyclase, GGDEF domain AM442_05805 PF00563 EAL domain AM442_05835 PF00009 Elongation factor Tu GTP binding domain AM442_05835 PF16658 Class II release factor RF3, C-terminal domain AM442_05835 PF03144 Elongation factor Tu domain 2 AM442_05850 PF01026 TatD related DNase AM442_05855 PF00694 Aconitase C-terminal domain AM442_05855 PF00330 Aconitase family (aconitate hydratase) AM442_05865 PF00899 ThiF family AM442_05875 PF03466 LysR substrate binding domain AM442_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05885 PF01207 Dihydrouridine synthase (Dus) AM442_05890 PF07690 Major Facilitator Superfamily AM442_05900 PF00892 EamA-like transporter family AM442_05905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM442_05905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM442_05910 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AM442_05915 PF02233 NAD(P) transhydrogenase beta subunit AM442_05920 PF00106 short chain dehydrogenase AM442_05930 PF01261 Xylose isomerase-like TIM barrel AM442_05935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM442_05935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM442_05940 PF00378 Enoyl-CoA hydratase/isomerase AM442_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_05945 PF00072 Response regulator receiver domain AM442_05945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM442_05945 PF00672 HAMP domain AM442_05945 PF01627 Hpt domain AM442_05945 PF00512 His Kinase A (phospho-acceptor) domain AM442_05950 PF00291 Pyridoxal-phosphate dependent enzyme AM442_05960 PF05958 tRNA (Uracil-5-)-methyltransferase AM442_05965 PF02824 TGS domain AM442_05965 PF04607 Region found in RelA / SpoT proteins AM442_05965 PF13291 ACT domain AM442_05975 PF03819 MazG nucleotide pyrophosphohydrolase domain AM442_05985 PF12626 Polymerase A arginine-rich C-terminus AM442_05985 PF01743 Poly A polymerase head domain AM442_05985 PF12627 Probable RNA and SrmB- binding site of polymerase A AM442_05990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM442_05995 PF02548 Ketopantoate hydroxymethyltransferase AM442_06000 PF02569 Pantoate-beta-alanine ligase AM442_06005 PF03668 P-loop ATPase protein family AM442_06010 PF00381 PTS HPr component phosphorylation site AM442_06015 PF04751 Protein of unknown function (DUF615) AM442_06020 PF13193 AMP-binding enzyme C-terminal domain AM442_06020 PF00501 AMP-binding enzyme AM442_06025 PF03129 Anticodon binding domain AM442_06025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM442_06025 PF02824 TGS domain AM442_06025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM442_06030 PF00707 Translation initiation factor IF-3, C-terminal domain AM442_06030 PF05198 Translation initiation factor IF-3, N-terminal domain AM442_06040 PF02798 Glutathione S-transferase, N-terminal domain AM442_06040 PF00043 Glutathione S-transferase, C-terminal domain AM442_06045 PF09335 SNARE associated Golgi protein AM442_06050 PF07690 Major Facilitator Superfamily AM442_06055 PF01632 Ribosomal protein L35 AM442_06060 PF00453 Ribosomal protein L20 AM442_06075 PF01409 tRNA synthetases class II core domain (F) AM442_06075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM442_06080 PF03483 B3/4 domain AM442_06080 PF03484 tRNA synthetase B5 domain AM442_06080 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM442_06080 PF01588 Putative tRNA binding domain AM442_06080 PF03147 Ferredoxin-fold anticodon binding domain AM442_06085 PF00216 Bacterial DNA-binding protein AM442_06100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM442_06100 PF07497 Rho termination factor, RNA-binding domain AM442_06100 PF07498 Rho termination factor, N-terminal domain AM442_06105 PF00085 Thioredoxin AM442_06110 PF02541 Ppx/GppA phosphatase family AM442_06115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM442_06120 PF11734 TilS substrate C-terminal domain AM442_06120 PF09179 TilS substrate binding domain AM442_06120 PF01171 PP-loop family AM442_06125 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM442_06125 PF03807 NADP oxidoreductase coenzyme F420-dependent AM442_06130 PF02325 YGGT family AM442_06135 PF01612 3'-5' exonuclease AM442_06135 PF00476 DNA polymerase family A AM442_06135 PF01367 5'-3' exonuclease, C-terminal SAM fold AM442_06135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM442_06155 PF00437 Type II/IV secretion system protein AM442_06160 PF02566 OsmC-like protein AM442_06165 PF01047 MarR family AM442_06175 PF00795 Carbon-nitrogen hydrolase AM442_06220 PF04552 Sigma-54, DNA binding domain AM442_06220 PF04963 Sigma-54 factor, core binding domain AM442_06220 PF00309 Sigma-54 factor, Activator interacting domain (AID) AM442_06225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM442_06230 PF01722 BolA-like protein AM442_06235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM442_06240 PF01634 ATP phosphoribosyltransferase AM442_06245 PF00815 Histidinol dehydrogenase AM442_06250 PF00155 Aminotransferase class I and II AM442_06255 PF04715 Anthranilate synthase component I, N terminal region AM442_06255 PF00425 chorismate binding enzyme AM442_06295 PF00293 NUDIX domain AM442_06300 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_06305 PF00814 Glycoprotease family AM442_06310 PF04445 Putative SAM-dependent methyltransferase AM442_06320 PF00756 Putative esterase AM442_06330 PF00834 Ribulose-phosphate 3 epimerase family AM442_06345 PF07732 Multicopper oxidase AM442_06345 PF07731 Multicopper oxidase AM442_06345 PF00394 Multicopper oxidase AM442_06360 PF00893 Small Multidrug Resistance protein AM442_06365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM442_06365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM442_06370 PF01960 ArgJ family AM442_06375 PF02445 Quinolinate synthetase A protein AM442_06400 PF00962 Adenosine/AMP deaminase AM442_06405 PF00107 Zinc-binding dehydrogenase AM442_06405 PF08240 Alcohol dehydrogenase GroES-like domain AM442_06410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06410 PF03466 LysR substrate binding domain AM442_06415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_06415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_06415 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_06420 PF07690 Major Facilitator Superfamily AM442_06425 PF02515 CoA-transferase family III AM442_06435 PF00890 FAD binding domain AM442_06435 PF14537 Cytochrome c3 AM442_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06440 PF03466 LysR substrate binding domain AM442_06450 PF07690 Major Facilitator Superfamily AM442_06460 PF03466 LysR substrate binding domain AM442_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06485 PF01717 Cobalamin-independent synthase, Catalytic domain AM442_06485 PF08267 Cobalamin-independent synthase, N-terminal domain AM442_06490 PF01613 Flavin reductase like domain AM442_06510 PF17074 Darcynin, domain of unknown function AM442_06525 PF06594 Haemolysin-type calcium binding protein related domain AM442_06525 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM442_06540 PF17074 Darcynin, domain of unknown function AM442_06590 PF02567 Phenazine biosynthesis-like protein AM442_06605 PF00268 Ribonucleotide reductase, small chain AM442_06615 PF03477 ATP cone domain AM442_06615 PF02867 Ribonucleotide reductase, barrel domain AM442_06615 PF00317 Ribonucleotide reductase, all-alpha domain AM442_06625 PF00486 Transcriptional regulatory protein, C terminal AM442_06625 PF00072 Response regulator receiver domain AM442_06630 PF00512 His Kinase A (phospho-acceptor) domain AM442_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_06630 PF00672 HAMP domain AM442_06640 PF00990 Diguanylate cyclase, GGDEF domain AM442_06640 PF17151 Periplasmic sensor domain AM442_06645 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM442_06650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM442_06655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM442_06655 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM442_06665 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM442_06665 PF10531 SLBB domain AM442_06665 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM442_06670 PF00384 Molybdopterin oxidoreductase AM442_06670 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM442_06670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM442_06675 PF00146 NADH dehydrogenase AM442_06680 PF12838 4Fe-4S dicluster domain AM442_06685 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM442_06690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM442_06695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM442_06695 PF00361 Proton-conducting membrane transporter AM442_06700 PF00361 Proton-conducting membrane transporter AM442_06705 PF00361 Proton-conducting membrane transporter AM442_06715 PF00313 'Cold-shock' DNA-binding domain AM442_06720 PF03466 LysR substrate binding domain AM442_06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06725 PF00970 Oxidoreductase FAD-binding domain AM442_06725 PF00175 Oxidoreductase NAD-binding domain AM442_06740 PF05552 Conserved TM helix AM442_06755 PF00291 Pyridoxal-phosphate dependent enzyme AM442_06760 PF13533 Biotin-lipoyl like AM442_06785 PF09334 tRNA synthetases class I (M) AM442_06785 PF01588 Putative tRNA binding domain AM442_06795 PF10609 NUBPL iron-transfer P-loop NTPase AM442_06805 PF01048 Phosphorylase superfamily AM442_06820 PF00692 dUTPase AM442_06865 PF01207 Dihydrouridine synthase (Dus) AM442_06875 PF00448 SRP54-type protein, GTPase domain AM442_06875 PF02881 SRP54-type protein, helical bundle domain AM442_06875 PF02978 Signal peptide binding domain AM442_06880 PF03309 Type III pantothenate kinase AM442_06890 PF01925 Sulfite exporter TauE/SafE AM442_06900 PF02463 RecF/RecN/SMC N terminal domain AM442_06900 PF06470 SMC proteins Flexible Hinge Domain AM442_06910 PF12826 Helix-hairpin-helix motif AM442_06910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM442_06910 PF00533 BRCA1 C Terminus (BRCT) domain AM442_06910 PF01653 NAD-dependent DNA ligase adenylation domain AM442_06910 PF03120 NAD-dependent DNA ligase OB-fold domain AM442_06915 PF00210 Ferritin-like domain AM442_06920 PF07690 Major Facilitator Superfamily AM442_06925 PF00982 Glycosyltransferase family 20 AM442_06930 PF02358 Trehalose-phosphatase AM442_06935 PF08241 Methyltransferase domain AM442_06935 PF12697 Alpha/beta hydrolase family AM442_06940 PF04055 Radical SAM superfamily AM442_06940 PF06968 Biotin and Thiamin Synthesis associated domain AM442_06940 PF00202 Aminotransferase class-III AM442_06945 PF00155 Aminotransferase class I and II AM442_06960 PF01479 S4 domain AM442_06960 PF00849 RNA pseudouridylate synthase AM442_06965 PF04079 Segregation and condensation complex subunit ScpB AM442_06970 PF02616 Segregation and condensation protein ScpA AM442_06975 PF01300 Telomere recombination AM442_06980 PF04315 Elongation factor P hydroxylase AM442_06985 PF02620 Large ribosomal RNA subunit accumulation protein YceD AM442_06990 PF01783 Ribosomal L32p protein family AM442_06995 PF00698 Acyl transferase domain AM442_07005 PF00550 Phosphopantetheine attachment site AM442_07010 PF04972 BON domain AM442_07010 PF01476 LysM domain AM442_07015 PF08543 Phosphomethylpyrimidine kinase AM442_07015 PF03070 TENA/THI-4/PQQC family AM442_07015 PF02581 Thiamine monophosphate synthase AM442_07025 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM442_07040 PF02261 Aspartate decarboxylase AM442_07045 PF01195 Peptidyl-tRNA hydrolase AM442_07050 PF01386 Ribosomal L25p family AM442_07055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM442_07055 PF14572 Phosphoribosyl synthetase-associated domain AM442_07075 PF08544 GHMP kinases C terminal AM442_07075 PF00288 GHMP kinases N terminal domain AM442_07080 PF03550 Outer membrane lipoprotein LolB AM442_07090 PF01488 Shikimate / quinate 5-dehydrogenase AM442_07090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM442_07090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM442_07095 PF08278 DNA primase DnaG DnaB-binding AM442_07095 PF10410 DnaB-helicase binding domain of primase AM442_07095 PF01807 CHC2 zinc finger AM442_07095 PF08275 DNA primase catalytic core, N-terminal domain AM442_07100 PF13525 Outer membrane lipoprotein AM442_07105 PF00849 RNA pseudouridylate synthase AM442_07105 PF01479 S4 domain AM442_07115 PF03358 NADPH-dependent FMN reductase AM442_07120 PF01668 SmpB protein AM442_07195 PF00772 DnaB-like helicase N terminal domain AM442_07195 PF03796 DnaB-like helicase C terminal domain AM442_07460 PF13356 Arm DNA-binding domain AM442_07460 PF00589 Phage integrase family AM442_07465 PF01467 Cytidylyltransferase-like AM442_07470 PF00037 4Fe-4S binding domain AM442_07490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_07490 PF03466 LysR substrate binding domain AM442_07495 PF00180 Isocitrate/isopropylmalate dehydrogenase AM442_07500 PF02028 BCCT, betaine/carnitine/choline family transporter AM442_07505 PF07859 alpha/beta hydrolase fold AM442_07510 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_07510 PF00355 Rieske [2Fe-2S] domain AM442_07515 PF00171 Aldehyde dehydrogenase family AM442_07520 PF00970 Oxidoreductase FAD-binding domain AM442_07520 PF00175 Oxidoreductase NAD-binding domain AM442_07520 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_07535 PF00795 Carbon-nitrogen hydrolase AM442_07535 PF02540 NAD synthase AM442_07545 PF05726 Pirin C-terminal cupin domain AM442_07545 PF02678 Pirin AM442_07555 PF02801 Beta-ketoacyl synthase, C-terminal domain AM442_07555 PF00109 Beta-ketoacyl synthase, N-terminal domain AM442_07565 PF00164 Ribosomal protein S12/S23 AM442_07570 PF00177 Ribosomal protein S7p/S5e AM442_07575 PF14492 Elongation Factor G, domain II AM442_07575 PF00009 Elongation factor Tu GTP binding domain AM442_07575 PF03144 Elongation factor Tu domain 2 AM442_07575 PF03764 Elongation factor G, domain IV AM442_07575 PF00679 Elongation factor G C-terminus AM442_07580 PF03143 Elongation factor Tu C-terminal domain AM442_07580 PF00009 Elongation factor Tu GTP binding domain AM442_07580 PF03144 Elongation factor Tu domain 2 AM442_07595 PF00583 Acetyltransferase (GNAT) family AM442_07600 PF04377 Arginine-tRNA-protein transferase, C terminus AM442_07600 PF04376 Arginine-tRNA-protein transferase, N terminus AM442_07605 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM442_07610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_07615 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AM442_07615 PF17854 FtsK alpha domain AM442_07615 PF09397 Ftsk gamma domain AM442_07615 PF01580 FtsK/SpoIIIE family AM442_07620 PF01810 LysE type translocator AM442_07630 PF03776 Septum formation topological specificity factor MinE AM442_07635 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM442_07640 PF03775 Septum formation inhibitor MinC, C-terminal domain AM442_07650 PF01553 Acyltransferase AM442_07655 PF13488 Glycine zipper AM442_07655 PF00691 OmpA family AM442_07660 PF13361 UvrD-like helicase C-terminal domain AM442_07660 PF00580 UvrD/REP helicase N-terminal domain AM442_07665 PF00692 dUTPase AM442_07670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM442_07670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_07670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_07670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_07675 PF00696 Amino acid kinase family AM442_07685 PF13230 Glutamine amidotransferases class-II AM442_07690 PF01814 Hemerythrin HHE cation binding domain AM442_07705 PF03658 RnfH family Ubiquitin AM442_07710 PF04355 SmpA / OmlA family AM442_07715 PF01475 Ferric uptake regulator family AM442_07720 PF00437 Type II/IV secretion system protein AM442_07725 PF00437 Type II/IV secretion system protein AM442_07730 PF01168 Alanine racemase, N-terminal domain AM442_07740 PF12320 Type 5 capsule protein repressor C-terminal domain AM442_07740 PF00149 Calcineurin-like phosphoesterase AM442_07760 PF01370 NAD dependent epimerase/dehydratase family AM442_07760 PF08338 Domain of unknown function (DUF1731) AM442_07765 PF01266 FAD dependent oxidoreductase AM442_07770 PF00490 Delta-aminolevulinic acid dehydratase AM442_07775 PF03061 Thioesterase superfamily AM442_07780 PF13533 Biotin-lipoyl like AM442_07785 PF07690 Major Facilitator Superfamily AM442_07800 PF01867 CRISPR associated protein Cas1 AM442_07810 PF09615 CRISPR-associated protein (Cas_Csy3) AM442_07825 PF18019 HD domain AM442_07845 PF00083 Sugar (and other) transporter AM442_07850 PF00701 Dihydrodipicolinate synthetase family AM442_07860 PF08281 Sigma-70, region 4 AM442_07860 PF04542 Sigma-70 region 2 AM442_07870 PF07715 TonB-dependent Receptor Plug Domain AM442_07870 PF00593 TonB dependent receptor AM442_07890 PF01126 Heme oxygenase AM442_07915 PF13520 Amino acid permease AM442_07935 PF06039 Malate:quinone oxidoreductase (Mqo) AM442_07940 PF05199 GMC oxidoreductase AM442_07940 PF00732 GMC oxidoreductase AM442_07945 PF00171 Aldehyde dehydrogenase family AM442_07950 PF13977 BetI-type transcriptional repressor, C-terminal AM442_07950 PF00440 Bacterial regulatory proteins, tetR family AM442_07955 PF02028 BCCT, betaine/carnitine/choline family transporter AM442_07960 PF02028 BCCT, betaine/carnitine/choline family transporter AM442_07970 PF03061 Thioesterase superfamily AM442_07980 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM442_07980 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM442_07985 PF00375 Sodium:dicarboxylate symporter family AM442_07990 PF07152 YaeQ protein AM442_07995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_08000 PF01522 Polysaccharide deacetylase AM442_08000 PF14883 Hypothetical glycosyl hydrolase family 13 AM442_08005 PF00535 Glycosyl transferase family 2 AM442_08015 PF00378 Enoyl-CoA hydratase/isomerase AM442_08030 PF01614 Bacterial transcriptional regulator AM442_08030 PF09339 IclR helix-turn-helix domain AM442_08035 PF00355 Rieske [2Fe-2S] domain AM442_08045 PF00355 Rieske [2Fe-2S] domain AM442_08055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_08060 PF14759 Reductase C-terminal AM442_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08065 PF07690 Major Facilitator Superfamily AM442_08075 PF12697 Alpha/beta hydrolase family AM442_08085 PF01958 Domain of unknown function DUF108 AM442_08085 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_08090 PF00171 Aldehyde dehydrogenase family AM442_08095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_08095 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_08095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_08105 PF07690 Major Facilitator Superfamily AM442_08110 PF01327 Polypeptide deformylase AM442_08115 PF04960 Glutaminase AM442_08120 PF02311 AraC-like ligand binding domain AM442_08120 PF12833 Helix-turn-helix domain AM442_08125 PF07690 Major Facilitator Superfamily AM442_08130 PF01263 Aldose 1-epimerase AM442_08145 PF03466 LysR substrate binding domain AM442_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08155 PF07690 Major Facilitator Superfamily AM442_08160 PF00456 Transketolase, thiamine diphosphate binding domain AM442_08165 PF02779 Transketolase, pyrimidine binding domain AM442_08165 PF02780 Transketolase, C-terminal domain AM442_08170 PF02574 Homocysteine S-methyltransferase AM442_08170 PF00809 Pterin binding enzyme AM442_08170 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM442_08170 PF02310 B12 binding domain AM442_08170 PF02607 B12 binding domain AM442_08175 PF01384 Phosphate transporter family AM442_08180 PF00291 Pyridoxal-phosphate dependent enzyme AM442_08195 PF03781 Sulfatase-modifying factor enzyme 1 AM442_08200 PF00884 Sulfatase AM442_08210 PF01106 NifU-like domain AM442_08210 PF01521 Iron-sulphur cluster biosynthesis AM442_08215 PF07715 TonB-dependent Receptor Plug Domain AM442_08215 PF00593 TonB dependent receptor AM442_08225 PF00561 alpha/beta hydrolase fold AM442_08230 PF00484 Carbonic anhydrase AM442_08235 PF13472 GDSL-like Lipase/Acylhydrolase family AM442_08240 PF00005 ABC transporter AM442_08250 PF01694 Rhomboid family AM442_08255 PF00912 Transglycosylase AM442_08260 PF02503 Polyphosphate kinase middle domain AM442_08260 PF13089 Polyphosphate kinase N-terminal domain AM442_08260 PF17941 Polyphosphate kinase C-terminal domain 1 AM442_08260 PF13090 Polyphosphate kinase C-terminal domain 2 AM442_08275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08275 PF03466 LysR substrate binding domain AM442_08280 PF00561 alpha/beta hydrolase fold AM442_08285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08285 PF18113 Rubredoxin binding C-terminal domain AM442_08290 PF00301 Rubredoxin AM442_08305 PF01336 OB-fold nucleic acid binding domain AM442_08305 PF00152 tRNA synthetases class II (D, K and N) AM442_08310 PF14052 Capsule assembly protein Wzi AM442_08320 PF01507 Phosphoadenosine phosphosulfate reductase family AM442_08325 PF00009 Elongation factor Tu GTP binding domain AM442_08340 PF03600 Citrate transporter AM442_08350 PF03471 Transporter associated domain AM442_08350 PF00571 CBS domain AM442_08350 PF01595 Cyclin M transmembrane N-terminal domain AM442_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08355 PF03466 LysR substrate binding domain AM442_08360 PF00463 Isocitrate lyase family AM442_08375 PF01774 UreD urease accessory protein AM442_08380 PF00547 Urease, gamma subunit AM442_08390 PF00699 Urease beta subunit AM442_08400 PF01979 Amidohydrolase family AM442_08400 PF00449 Urease alpha-subunit, N-terminal domain AM442_08405 PF02814 UreE urease accessory protein, N-terminal domain AM442_08405 PF05194 UreE urease accessory protein, C-terminal domain AM442_08410 PF01730 UreF AM442_08415 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM442_08430 PF00905 Penicillin binding protein transpeptidase domain AM442_08430 PF03717 Penicillin-binding Protein dimerisation domain AM442_08445 PF05191 Adenylate kinase, active site lid AM442_08455 PF00633 Helix-hairpin-helix motif AM442_08455 PF10576 Iron-sulfur binding domain of endonuclease III AM442_08455 PF00730 HhH-GPD superfamily base excision DNA repair protein AM442_08460 PF04060 Putative Fe-S cluster AM442_08465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM442_08465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM442_08480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM442_08485 PF02590 Predicted SPOUT methyltransferase AM442_08490 PF02190 ATP-dependent protease La (LON) substrate-binding domain AM442_08490 PF05362 Lon protease (S16) C-terminal proteolytic domain AM442_08490 PF00004 ATPase family associated with various cellular activities (AAA) AM442_08500 PF03895 YadA-like membrane anchor domain AM442_08500 PF05658 Head domain of trimeric autotransporter adhesin AM442_08500 PF05662 Coiled stalk of trimeric autotransporter adhesin AM442_08500 PF13018 Extended Signal Peptide of Type V secretion system AM442_08510 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM442_08550 PF05195 Aminopeptidase P, N-terminal domain AM442_08550 PF00557 Metallopeptidase family M24 AM442_08555 PF01494 FAD binding domain AM442_08560 PF01494 FAD binding domain AM442_08570 PF13411 MerR HTH family regulatory protein AM442_08580 PF01810 LysE type translocator AM442_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08585 PF03466 LysR substrate binding domain AM442_08595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM442_08600 PF02021 Uncharacterised protein family UPF0102 AM442_08605 PF04972 BON domain AM442_08615 PF00293 NUDIX domain AM442_08615 PF09297 NADH pyrophosphatase zinc ribbon domain AM442_08625 PF00929 Exonuclease AM442_08630 PF01476 LysM domain AM442_08630 PF01476 LysM domain AM442_08630 PF01464 Transglycosylase SLT domain AM442_08630 PF01464 Transglycosylase SLT domain AM442_08635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM442_08640 PF00528 Binding-protein-dependent transport system inner membrane component AM442_08645 PF00528 Binding-protein-dependent transport system inner membrane component AM442_08645 PF12911 N-terminal TM domain of oligopeptide transport permease C AM442_08650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM442_08650 PF00005 ABC transporter AM442_08655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_08655 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08660 PF07715 TonB-dependent Receptor Plug Domain AM442_08660 PF00593 TonB dependent receptor AM442_08670 PF00929 Exonuclease AM442_08675 PF01979 Amidohydrolase family AM442_08680 PF00563 EAL domain AM442_08680 PF00360 Phytochrome region AM442_08680 PF00990 Diguanylate cyclase, GGDEF domain AM442_08680 PF01590 GAF domain AM442_08685 PF00764 Arginosuccinate synthase AM442_08690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_08700 PF03180 NLPA lipoprotein AM442_08745 PF04717 Type VI secretion system, phage-baseplate injector AM442_08745 PF16671 Actin cross-linking domain AM442_08750 PF03527 RHS protein AM442_08750 PF05593 RHS Repeat AM442_08790 PF00324 Amino acid permease AM442_08795 PF01266 FAD dependent oxidoreductase AM442_08800 PF00324 Amino acid permease AM442_08810 PF07729 FCD domain AM442_08810 PF00392 Bacterial regulatory proteins, gntR family AM442_08820 PF00171 Aldehyde dehydrogenase family AM442_08830 PF00202 Aminotransferase class-III AM442_08835 PF04958 Arginine N-succinyltransferase beta subunit AM442_08840 PF00324 Amino acid permease AM442_08845 PF00171 Aldehyde dehydrogenase family AM442_08850 PF12833 Helix-turn-helix domain AM442_08850 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AM442_08860 PF00892 EamA-like transporter family AM442_08865 PF08666 SAF domain AM442_08865 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AM442_08870 PF07690 Major Facilitator Superfamily AM442_08875 PF13378 Enolase C-terminal domain-like AM442_08880 PF00701 Dihydrodipicolinate synthetase family AM442_08885 PF00171 Aldehyde dehydrogenase family AM442_08890 PF00392 Bacterial regulatory proteins, gntR family AM442_08890 PF07729 FCD domain AM442_08900 PF13610 DDE domain AM442_08920 PF03573 outer membrane porin, OprD family AM442_08925 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_08925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_08925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_08935 PF00171 Aldehyde dehydrogenase family AM442_08940 PF00378 Enoyl-CoA hydratase/isomerase AM442_08945 PF07690 Major Facilitator Superfamily AM442_08960 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_08960 PF00175 Oxidoreductase NAD-binding domain AM442_08965 PF00355 Rieske [2Fe-2S] domain AM442_08975 PF03781 Sulfatase-modifying factor enzyme 1 AM442_08980 PF00884 Sulfatase AM442_08985 PF07690 Major Facilitator Superfamily AM442_08995 PF05199 GMC oxidoreductase AM442_09000 PF07859 alpha/beta hydrolase fold AM442_09005 PF00106 short chain dehydrogenase AM442_09010 PF00743 Flavin-binding monooxygenase-like AM442_09015 PF12833 Helix-turn-helix domain AM442_09015 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AM442_09020 PF04072 Leucine carboxyl methyltransferase AM442_09025 PF00743 Flavin-binding monooxygenase-like AM442_09030 PF00106 short chain dehydrogenase AM442_09045 PF17932 Tetracyclin repressor-like, C-terminal domain AM442_09045 PF00440 Bacterial regulatory proteins, tetR family AM442_09050 PF02678 Pirin AM442_09050 PF17954 Quercetinase C-terminal cupin domain AM442_09060 PF00106 short chain dehydrogenase AM442_09065 PF00743 Flavin-binding monooxygenase-like AM442_09075 PF00860 Permease family AM442_09080 PF00962 Adenosine/AMP deaminase AM442_09085 PF01292 Prokaryotic cytochrome b561 AM442_09095 PF01351 Ribonuclease HII AM442_09100 PF02599 Global regulator protein family AM442_09105 PF13840 ACT domain AM442_09105 PF01842 ACT domain AM442_09105 PF00696 Amino acid kinase family AM442_09110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM442_09110 PF01411 tRNA synthetases class II (A) AM442_09110 PF02272 DHHA1 domain AM442_09115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM442_09115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM442_09120 PF13393 Histidyl-tRNA synthetase AM442_09125 PF00709 Adenylosuccinate synthetase AM442_09140 PF00248 Aldo/keto reductase family AM442_09145 PF00027 Cyclic nucleotide-binding domain AM442_09145 PF13545 Crp-like helix-turn-helix domain AM442_09150 PF02566 OsmC-like protein AM442_09165 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_09165 PF17871 AAA lid domain AM442_09165 PF07724 AAA domain (Cdc48 subfamily) AM442_09165 PF00004 ATPase family associated with various cellular activities (AAA) AM442_09165 PF02861 Clp amino terminal domain, pathogenicity island component AM442_09180 PF01170 Putative RNA methylase family UPF0020 AM442_09180 PF10672 S-adenosylmethionine-dependent methyltransferase AM442_09180 PF02926 THUMP domain AM442_09190 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM442_09190 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM442_09195 PF01979 Amidohydrolase family AM442_09200 PF00691 OmpA family AM442_09200 PF13488 Glycine zipper AM442_09210 PF00043 Glutathione S-transferase, C-terminal domain AM442_09210 PF13417 Glutathione S-transferase, N-terminal domain AM442_09215 PF02390 Putative methyltransferase AM442_09225 PF00043 Glutathione S-transferase, C-terminal domain AM442_09225 PF02798 Glutathione S-transferase, N-terminal domain AM442_09235 PF13192 Thioredoxin domain AM442_09235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_09255 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM442_09255 PF00578 AhpC/TSA family AM442_09260 PF11898 Domain of unknown function (DUF3418) AM442_09260 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AM442_09260 PF00270 DEAD/DEAH box helicase AM442_09260 PF04408 Helicase associated domain (HA2) AM442_09260 PF00271 Helicase conserved C-terminal domain AM442_09265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM442_09265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM442_09275 PF07690 Major Facilitator Superfamily AM442_09280 PF03594 Benzoate membrane transport protein AM442_09285 PF00106 short chain dehydrogenase AM442_09290 PF00970 Oxidoreductase FAD-binding domain AM442_09290 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_09290 PF00175 Oxidoreductase NAD-binding domain AM442_09295 PF00866 Ring hydroxylating beta subunit AM442_09300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_09300 PF00355 Rieske [2Fe-2S] domain AM442_09305 PF03466 LysR substrate binding domain AM442_09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_09315 PF00175 Oxidoreductase NAD-binding domain AM442_09315 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_09315 PF00970 Oxidoreductase FAD-binding domain AM442_09325 PF04945 YHS domain AM442_09325 PF02332 Methane/Phenol/Toluene Hydroxylase AM442_09330 PF02406 MmoB/DmpM family AM442_09335 PF02332 Methane/Phenol/Toluene Hydroxylase AM442_09340 PF06099 Phenol hydroxylase subunit AM442_09345 PF02954 Bacterial regulatory protein, Fis family AM442_09345 PF00158 Sigma-54 interaction domain AM442_09345 PF06505 Activator of aromatic catabolism AM442_09345 PF02830 V4R domain AM442_09355 PF00403 Heavy-metal-associated domain AM442_09360 PF09278 MerR, DNA binding AM442_09360 PF00376 MerR family regulatory protein AM442_09400 PF02601 Exonuclease VII, large subunit AM442_09400 PF13742 OB-fold nucleic acid binding domain AM442_09435 PF01810 LysE type translocator AM442_09440 PF00313 'Cold-shock' DNA-binding domain AM442_09450 PF03807 NADP oxidoreductase coenzyme F420-dependent AM442_09450 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM442_09480 PF07690 Major Facilitator Superfamily AM442_09485 PF01638 HxlR-like helix-turn-helix AM442_09525 PF01406 tRNA synthetases class I (C) catalytic domain AM442_09525 PF09190 DALR domain AM442_09530 PF01380 SIS domain AM442_09530 PF00571 CBS domain AM442_09545 PF03968 OstA-like protein AM442_09550 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM442_09550 PF00005 ABC transporter AM442_09555 PF02321 Outer membrane efflux protein AM442_09560 PF00664 ABC transporter transmembrane region AM442_09560 PF00005 ABC transporter AM442_09560 PF03412 Peptidase C39 family AM442_09570 PF01205 Uncharacterized protein family UPF0029 AM442_09575 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_09585 PF01596 O-methyltransferase AM442_09595 PF00037 4Fe-4S binding domain AM442_09595 PF11953 Domain of unknown function (DUF3470) AM442_09605 PF00488 MutS domain V AM442_09605 PF05192 MutS domain III AM442_09605 PF05188 MutS domain II AM442_09605 PF01624 MutS domain I AM442_09605 PF05190 MutS family domain IV AM442_09610 PF01037 Lrp/AsnC ligand binding domain AM442_09615 PF00892 EamA-like transporter family AM442_09620 PF03707 Bacterial signalling protein N terminal repeat AM442_09620 PF00990 Diguanylate cyclase, GGDEF domain AM442_09620 PF00563 EAL domain AM442_09625 PF03279 Bacterial lipid A biosynthesis acyltransferase AM442_09640 PF07690 Major Facilitator Superfamily AM442_09670 PF02525 Flavodoxin-like fold AM442_09695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_09695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_09725 PF16671 Actin cross-linking domain AM442_09725 PF04717 Type VI secretion system, phage-baseplate injector AM442_09730 PF03527 RHS protein AM442_09730 PF14220 Domain of unknown function (DUF4329) AM442_09730 PF05593 RHS Repeat AM442_09750 PF13737 Transposase DDE domain AM442_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_09765 PF03466 LysR substrate binding domain AM442_09770 PF01566 Natural resistance-associated macrophage protein AM442_09775 PF03746 LamB/YcsF family AM442_09780 PF07286 Protein of unknown function (DUF1445) AM442_09790 PF00364 Biotin-requiring enzyme AM442_09790 PF02785 Biotin carboxylase C-terminal domain AM442_09790 PF00289 Biotin carboxylase, N-terminal domain AM442_09790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_09795 PF00654 Voltage gated chloride channel AM442_09820 PF13823 Alcohol dehydrogenase GroES-associated AM442_09820 PF08240 Alcohol dehydrogenase GroES-like domain AM442_09820 PF00107 Zinc-binding dehydrogenase AM442_09835 PF02785 Biotin carboxylase C-terminal domain AM442_09835 PF00289 Biotin carboxylase, N-terminal domain AM442_09835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_09840 PF02525 Flavodoxin-like fold AM442_09845 PF01638 HxlR-like helix-turn-helix AM442_09855 PF01402 Ribbon-helix-helix protein, copG family AM442_09855 PF08753 NikR C terminal nickel binding domain AM442_09860 PF01425 Amidase AM442_09865 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_09870 PF00005 ABC transporter AM442_09940 PF00691 OmpA family AM442_09940 PF01389 OmpA-like transmembrane domain AM442_09950 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_09950 PF00004 ATPase family associated with various cellular activities (AAA) AM442_09950 PF17871 AAA lid domain AM442_09950 PF07724 AAA domain (Cdc48 subfamily) AM442_09980 PF03466 LysR substrate binding domain AM442_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_09990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM442_09995 PF07690 Major Facilitator Superfamily AM442_10010 PF02677 Epoxyqueuosine reductase QueH AM442_10025 PF09278 MerR, DNA binding AM442_10025 PF00376 MerR family regulatory protein AM442_10040 PF00701 Dihydrodipicolinate synthetase family AM442_10050 PF00392 Bacterial regulatory proteins, gntR family AM442_10055 PF05544 Proline racemase AM442_10060 PF01266 FAD dependent oxidoreductase AM442_10070 PF04324 BFD-like [2Fe-2S] binding domain AM442_10070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_10080 PF00083 Sugar (and other) transporter AM442_10085 PF00171 Aldehyde dehydrogenase family AM442_10090 PF13520 Amino acid permease AM442_10095 PF03313 Serine dehydratase alpha chain AM442_10095 PF03315 Serine dehydratase beta chain AM442_10100 PF01575 MaoC like domain AM442_10100 PF00171 Aldehyde dehydrogenase family AM442_10105 PF05138 Phenylacetic acid catabolic protein AM442_10110 PF06243 Phenylacetic acid degradation B AM442_10115 PF05138 Phenylacetic acid catabolic protein AM442_10120 PF01883 Iron-sulfur cluster assembly protein AM442_10125 PF00175 Oxidoreductase NAD-binding domain AM442_10125 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_10125 PF00970 Oxidoreductase FAD-binding domain AM442_10130 PF00378 Enoyl-CoA hydratase/isomerase AM442_10135 PF00378 Enoyl-CoA hydratase/isomerase AM442_10140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_10140 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM442_10140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_10145 PF00108 Thiolase, N-terminal domain AM442_10145 PF02803 Thiolase, C-terminal domain AM442_10150 PF00501 AMP-binding enzyme AM442_10150 PF14535 AMP-binding enzyme C-terminal domain AM442_10155 PF08223 PaaX-like protein C-terminal domain AM442_10155 PF07848 PaaX-like protein AM442_10160 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_10165 PF03061 Thioesterase superfamily AM442_10170 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM442_10195 PF00199 Catalase AM442_10200 PF01292 Prokaryotic cytochrome b561 AM442_10220 PF12697 Alpha/beta hydrolase family AM442_10225 PF01613 Flavin reductase like domain AM442_10230 PF00296 Luciferase-like monooxygenase AM442_10235 PF00171 Aldehyde dehydrogenase family AM442_10245 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM442_10255 PF00171 Aldehyde dehydrogenase family AM442_10260 PF02627 Carboxymuconolactone decarboxylase family AM442_10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10265 PF03466 LysR substrate binding domain AM442_10270 PF02525 Flavodoxin-like fold AM442_10275 PF01614 Bacterial transcriptional regulator AM442_10275 PF09339 IclR helix-turn-helix domain AM442_10280 PF01494 FAD binding domain AM442_10285 PF00392 Bacterial regulatory proteins, gntR family AM442_10285 PF07702 UTRA domain AM442_10295 PF00005 ABC transporter AM442_10295 PF08402 TOBE domain AM442_10300 PF00528 Binding-protein-dependent transport system inner membrane component AM442_10305 PF01266 FAD dependent oxidoreductase AM442_10310 PF00266 Aminotransferase class-V AM442_10315 PF13419 Haloacid dehalogenase-like hydrolase AM442_10320 PF07690 Major Facilitator Superfamily AM442_10325 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10345 PF09339 IclR helix-turn-helix domain AM442_10350 PF00378 Enoyl-CoA hydratase/isomerase AM442_10355 PF03060 Nitronate monooxygenase AM442_10365 PF16861 Carbamoyltransferase C-terminus AM442_10365 PF02543 Carbamoyltransferase N-terminus AM442_10370 PF01810 LysE type translocator AM442_10380 PF09339 IclR helix-turn-helix domain AM442_10385 PF00108 Thiolase, N-terminal domain AM442_10385 PF02803 Thiolase, C-terminal domain AM442_10390 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM442_10390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_10390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_10400 PF00378 Enoyl-CoA hydratase/isomerase AM442_10405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10405 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10410 PF07690 Major Facilitator Superfamily AM442_10415 PF01144 Coenzyme A transferase AM442_10420 PF01144 Coenzyme A transferase AM442_10430 PF07690 Major Facilitator Superfamily AM442_10440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10440 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM442_10440 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10455 PF03466 LysR substrate binding domain AM442_10460 PF00682 HMGL-like AM442_10465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_10465 PF02785 Biotin carboxylase C-terminal domain AM442_10465 PF00364 Biotin-requiring enzyme AM442_10465 PF00289 Biotin carboxylase, N-terminal domain AM442_10470 PF00378 Enoyl-CoA hydratase/isomerase AM442_10475 PF01039 Carboxyl transferase domain AM442_10480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10480 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10485 PF00440 Bacterial regulatory proteins, tetR family AM442_10490 PF00501 AMP-binding enzyme AM442_10490 PF13193 AMP-binding enzyme C-terminal domain AM442_10510 PF03466 LysR substrate binding domain AM442_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10545 PF02464 Competence-damaged protein AM442_10545 PF18146 Damage-inducible protein CinA KH domain AM442_10545 PF00994 Probable molybdopterin binding domain AM442_10555 PF06628 Catalase-related immune-responsive AM442_10555 PF18011 C-terminal domain found in long catalases AM442_10555 PF00199 Catalase AM442_10580 PF00717 Peptidase S24-like AM442_10590 PF13404 AsnC-type helix-turn-helix domain AM442_10590 PF01037 Lrp/AsnC ligand binding domain AM442_10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_10600 PF00512 His Kinase A (phospho-acceptor) domain AM442_10600 PF09308 LuxQ, periplasmic AM442_10600 PF00072 Response regulator receiver domain AM442_10605 PF00072 Response regulator receiver domain AM442_10620 PF00528 Binding-protein-dependent transport system inner membrane component AM442_10625 PF00528 Binding-protein-dependent transport system inner membrane component AM442_10630 PF00005 ABC transporter AM442_10635 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_10640 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10650 PF03466 LysR substrate binding domain AM442_10655 PF01810 LysE type translocator AM442_10665 PF00266 Aminotransferase class-V AM442_10675 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_10680 PF00581 Rhodanese-like domain AM442_10690 PF03466 LysR substrate binding domain AM442_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10695 PF02798 Glutathione S-transferase, N-terminal domain AM442_10700 PF02798 Glutathione S-transferase, N-terminal domain AM442_10700 PF14834 Glutathione S-transferase, C-terminal domain AM442_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10705 PF03466 LysR substrate binding domain AM442_10710 PF03788 LrgA family AM442_10715 PF04172 LrgB-like family AM442_10720 PF00392 Bacterial regulatory proteins, gntR family AM442_10720 PF00155 Aminotransferase class I and II AM442_10735 PF07690 Major Facilitator Superfamily AM442_10745 PF03466 LysR substrate binding domain AM442_10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10750 PF16957 Malonate decarboxylase, alpha subunit, transporter AM442_10755 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM442_10760 PF06857 Malonate decarboxylase delta subunit (MdcD) AM442_10765 PF01039 Carboxyl transferase domain AM442_10775 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AM442_10780 PF00698 Acyl transferase domain AM442_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10795 PF03466 LysR substrate binding domain AM442_10800 PF00155 Aminotransferase class I and II AM442_10800 PF00392 Bacterial regulatory proteins, gntR family AM442_10810 PF02322 Cytochrome bd terminal oxidase subunit II AM442_10815 PF01654 Cytochrome bd terminal oxidase subunit I AM442_10835 PF00296 Luciferase-like monooxygenase AM442_10840 PF00083 Sugar (and other) transporter AM442_10850 PF13610 DDE domain AM442_10855 PF01636 Phosphotransferase enzyme family AM442_10870 PF13610 DDE domain AM442_10885 PF03466 LysR substrate binding domain AM442_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10895 PF13382 Adenine deaminase C-terminal domain AM442_10895 PF01979 Amidohydrolase family AM442_10905 PF03960 ArsC family AM442_10910 PF01022 Bacterial regulatory protein, arsR family AM442_10915 PF01758 Sodium Bile acid symporter family AM442_10920 PF03466 LysR substrate binding domain AM442_10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_10935 PF13192 Thioredoxin domain AM442_10950 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_10955 PF00588 SpoU rRNA Methylase family AM442_10960 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM442_10960 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM442_10960 PF14579 Helix-hairpin-helix motif AM442_10960 PF01336 OB-fold nucleic acid binding domain AM442_10960 PF02811 PHP domain AM442_10965 PF00710 Asparaginase, N-terminal AM442_10965 PF17763 Glutaminase/Asparaginase C-terminal domain AM442_10980 PF00375 Sodium:dicarboxylate symporter family AM442_10985 PF00155 Aminotransferase class I and II AM442_10990 PF01641 SelR domain AM442_10995 PF00255 Glutathione peroxidase AM442_11000 PF12852 Cupin AM442_11000 PF12833 Helix-turn-helix domain AM442_11010 PF00155 Aminotransferase class I and II AM442_11015 PF01909 Nucleotidyltransferase domain AM442_11015 PF01966 HD domain AM442_11015 PF08335 GlnD PII-uridylyltransferase AM442_11020 PF02222 ATP-grasp domain AM442_11030 PF05437 Branched-chain amino acid transport protein (AzlD) AM442_11035 PF03591 AzlC protein AM442_11060 PF06071 Protein of unknown function (DUF933) AM442_11060 PF01926 50S ribosome-binding GTPase AM442_11065 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11070 PF09383 NIL domain AM442_11070 PF00005 ABC transporter AM442_11075 PF03180 NLPA lipoprotein AM442_11080 PF03180 NLPA lipoprotein AM442_11085 PF00296 Luciferase-like monooxygenase AM442_11095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_11095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_11110 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11115 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11120 PF00005 ABC transporter AM442_11130 PF01037 Lrp/AsnC ligand binding domain AM442_11135 PF01709 Transcriptional regulator AM442_11145 PF00440 Bacterial regulatory proteins, tetR family AM442_11180 PF03466 LysR substrate binding domain AM442_11180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_11190 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM442_11200 PF00892 EamA-like transporter family AM442_11225 PF13954 PapC N-terminal domain AM442_11225 PF00577 Outer membrane usher protein AM442_11225 PF13953 PapC C-terminal domain AM442_11230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM442_11230 PF02753 Pili assembly chaperone PapD, C-terminal domain AM442_11235 PF16970 Type-1 fimbrial protein, A AM442_11250 PF06968 Biotin and Thiamin Synthesis associated domain AM442_11250 PF04055 Radical SAM superfamily AM442_11255 PF08331 Domain of unknown function (DUF1730) AM442_11260 PF03853 YjeF-related protein N-terminus AM442_11260 PF01256 Carbohydrate kinase AM442_11265 PF02075 Crossover junction endodeoxyribonuclease RuvC AM442_11280 PF00905 Penicillin binding protein transpeptidase domain AM442_11300 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM442_11300 PF02772 S-adenosylmethionine synthetase, central domain AM442_11300 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM442_11305 PF02780 Transketolase, C-terminal domain AM442_11305 PF02779 Transketolase, pyrimidine binding domain AM442_11305 PF00456 Transketolase, thiamine diphosphate binding domain AM442_11315 PF04264 YceI-like domain AM442_11325 PF09992 Phosphodiester glycosidase AM442_11335 PF05958 tRNA (Uracil-5-)-methyltransferase AM442_11340 PF04229 GrpB protein AM442_11345 PF01619 Proline dehydrogenase AM442_11345 PF00171 Aldehyde dehydrogenase family AM442_11345 PF14850 DNA-binding domain of Proline dehydrogenase AM442_11345 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM442_11350 PF01037 Lrp/AsnC ligand binding domain AM442_11355 PF00474 Sodium:solute symporter family AM442_11360 PF02146 Sir2 family AM442_11365 PF01597 Glycine cleavage H-protein AM442_11370 PF12833 Helix-turn-helix domain AM442_11370 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AM442_11380 PF00664 ABC transporter transmembrane region AM442_11380 PF00005 ABC transporter AM442_11385 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AM442_11390 PF06912 Protein of unknown function (DUF1275) AM442_11395 PF00375 Sodium:dicarboxylate symporter family AM442_11410 PF08007 Cupin superfamily protein AM442_11415 PF02545 Maf-like protein AM442_11425 PF00162 Phosphoglycerate kinase AM442_11435 PF01116 Fructose-bisphosphate aldolase class-II AM442_11440 PF00639 PPIC-type PPIASE domain AM442_11440 PF09312 SurA N-terminal domain AM442_11445 PF04453 LPS transport system D AM442_11445 PF03968 OstA-like protein AM442_11450 PF01636 Phosphotransferase enzyme family AM442_11455 PF00483 Nucleotidyl transferase AM442_11460 PF02527 rRNA small subunit methyltransferase G AM442_11465 PF13614 AAA domain AM442_11470 PF17762 HTH domain found in ParB protein AM442_11470 PF02195 ParB-like nuclease domain AM442_11475 PF01618 MotA/TolQ/ExbB proton channel family AM442_11485 PF00664 ABC transporter transmembrane region AM442_11485 PF00005 ABC transporter AM442_11490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AM442_11495 PF02348 Cytidylyltransferase AM442_11500 PF09115 DNA polymerase III, delta subunit, C terminal AM442_11510 PF01026 TatD related DNase AM442_11525 PF02501 Type II secretion system (T2SS), protein I AM442_11525 PF07963 Prokaryotic N-terminal methylation motif AM442_11530 PF07963 Prokaryotic N-terminal methylation motif AM442_11530 PF11612 Type II secretion system (T2SS), protein J AM442_11535 PF03934 Type II secretion system (T2SS), protein K AM442_11545 PF03167 Uracil DNA glycosylase superfamily AM442_11555 PF14437 MafB19-like deaminase AM442_11565 PF02224 Cytidylate kinase AM442_11570 PF00575 S1 RNA binding domain AM442_11575 PF00216 Bacterial DNA-binding protein AM442_11585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM442_11595 PF00743 Flavin-binding monooxygenase-like AM442_11605 PF03969 AFG1-like ATPase AM442_11610 PF01274 Malate synthase AM442_11620 PF02472 Biopolymer transport protein ExbD/TolR AM442_11625 PF02472 Biopolymer transport protein ExbD/TolR AM442_11630 PF01618 MotA/TolQ/ExbB proton channel family AM442_11640 PF07715 TonB-dependent Receptor Plug Domain AM442_11640 PF00593 TonB dependent receptor AM442_11660 PF01432 Peptidase family M3 AM442_11665 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11670 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM442_11675 PF00005 ABC transporter AM442_11690 PF00459 Inositol monophosphatase family AM442_11700 PF01649 Ribosomal protein S20 AM442_11705 PF13460 NAD(P)H-binding AM442_11710 PF03737 Aldolase/RraA AM442_11730 PF03461 TRCF domain AM442_11730 PF00270 DEAD/DEAH box helicase AM442_11730 PF02559 CarD-like/TRCF domain AM442_11730 PF17757 UvrB interaction domain AM442_11730 PF00271 Helicase conserved C-terminal domain AM442_11740 PF00211 Adenylate and Guanylate cyclase catalytic domain AM442_11745 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_11750 PF00012 Hsp70 protein AM442_11755 PF07743 HSCB C-terminal oligomerisation domain AM442_11755 PF00226 DnaJ domain AM442_11760 PF01521 Iron-sulphur cluster biosynthesis AM442_11765 PF01592 NifU-like N terminal domain AM442_11770 PF00266 Aminotransferase class-V AM442_11775 PF02082 Transcriptional regulator AM442_11790 PF00216 Bacterial DNA-binding protein AM442_11795 PF09312 SurA N-terminal domain AM442_11795 PF00639 PPIC-type PPIASE domain AM442_11800 PF12833 Helix-turn-helix domain AM442_11800 PF12852 Cupin AM442_11805 PF00487 Fatty acid desaturase AM442_11810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_11810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_11810 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_11815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_11815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_11815 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_11820 PF03109 ABC1 family AM442_11830 PF04073 Aminoacyl-tRNA editing domain AM442_11835 PF04183 IucA / IucC family AM442_11835 PF06276 Ferric iron reductase FhuF-like transporter AM442_11840 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM442_11845 PF07690 Major Facilitator Superfamily AM442_11850 PF04183 IucA / IucC family AM442_11850 PF06276 Ferric iron reductase FhuF-like transporter AM442_11855 PF06276 Ferric iron reductase FhuF-like transporter AM442_11855 PF04183 IucA / IucC family AM442_11870 PF07715 TonB-dependent Receptor Plug Domain AM442_11870 PF00593 TonB dependent receptor AM442_11905 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AM442_11910 PF02277 Phosphoribosyltransferase AM442_11915 PF00300 Histidine phosphatase superfamily (branch 1) AM442_11925 PF02654 Cobalamin-5-phosphate synthase AM442_11930 PF00793 DAHP synthetase I family AM442_11935 PF01925 Sulfite exporter TauE/SafE AM442_11955 PF00593 TonB dependent receptor AM442_11955 PF07715 TonB-dependent Receptor Plug Domain AM442_11960 PF02684 Lipid-A-disaccharide synthetase AM442_11970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_11975 PF00005 ABC transporter AM442_12010 PF01230 HIT domain AM442_12035 PF13533 Biotin-lipoyl like AM442_12040 PF07690 Major Facilitator Superfamily AM442_12070 PF01975 Survival protein SurE AM442_12080 PF02824 TGS domain AM442_12080 PF04607 Region found in RelA / SpoT proteins AM442_12080 PF13291 ACT domain AM442_12130 PF12146 Serine aminopeptidase, S33 AM442_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12135 PF03466 LysR substrate binding domain AM442_12145 PF12146 Serine aminopeptidase, S33 AM442_12150 PF02311 AraC-like ligand binding domain AM442_12150 PF12833 Helix-turn-helix domain AM442_12160 PF16527 Two-component sensor protein CpxA, periplasmic domain AM442_12160 PF00512 His Kinase A (phospho-acceptor) domain AM442_12160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_12160 PF00672 HAMP domain AM442_12165 PF00072 Response regulator receiver domain AM442_12165 PF00486 Transcriptional regulatory protein, C terminal AM442_12170 PF00529 HlyD membrane-fusion protein of T1SS AM442_12170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_12175 PF00873 AcrB/AcrD/AcrF family AM442_12185 PF12146 Serine aminopeptidase, S33 AM442_12190 PF00743 Flavin-binding monooxygenase-like AM442_12195 PF01593 Flavin containing amine oxidoreductase AM442_12210 PF01266 FAD dependent oxidoreductase AM442_12230 PF05544 Proline racemase AM442_12235 PF00732 GMC oxidoreductase AM442_12235 PF05199 GMC oxidoreductase AM442_12245 PF00561 alpha/beta hydrolase fold AM442_12250 PF01958 Domain of unknown function DUF108 AM442_12250 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_12260 PF02264 LamB porin AM442_12275 PF07690 Major Facilitator Superfamily AM442_12280 PF00732 GMC oxidoreductase AM442_12280 PF05199 GMC oxidoreductase AM442_12285 PF00892 EamA-like transporter family AM442_12290 PF01738 Dienelactone hydrolase family AM442_12295 PF00356 Bacterial regulatory proteins, lacI family AM442_12300 PF04172 LrgB-like family AM442_12315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_12315 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_12315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_12320 PF05199 GMC oxidoreductase AM442_12320 PF00732 GMC oxidoreductase AM442_12325 PF07690 Major Facilitator Superfamily AM442_12330 PF00459 Inositol monophosphatase family AM442_12340 PF05690 Thiazole biosynthesis protein ThiG AM442_12345 PF02264 LamB porin AM442_12355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_12355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_12355 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_12365 PF00356 Bacterial regulatory proteins, lacI family AM442_12375 PF05199 GMC oxidoreductase AM442_12375 PF00732 GMC oxidoreductase AM442_12380 PF00933 Glycosyl hydrolase family 3 N terminal domain AM442_12390 PF00293 NUDIX domain AM442_12395 PF00248 Aldo/keto reductase family AM442_12410 PF13091 PLD-like domain AM442_12430 PF01244 Membrane dipeptidase (Peptidase family M19) AM442_12435 PF13186 Iron-sulfur cluster-binding domain AM442_12435 PF04055 Radical SAM superfamily AM442_12440 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AM442_12445 PF03070 TENA/THI-4/PQQC family AM442_12450 PF12706 Beta-lactamase superfamily domain AM442_12455 PF08042 PqqA family AM442_12460 PF02503 Polyphosphate kinase middle domain AM442_12460 PF13089 Polyphosphate kinase N-terminal domain AM442_12460 PF13090 Polyphosphate kinase C-terminal domain 2 AM442_12460 PF17941 Polyphosphate kinase C-terminal domain 1 AM442_12475 PF01420 Type I restriction modification DNA specificity domain AM442_12485 PF02384 N-6 DNA Methylase AM442_12490 PF00149 Calcineurin-like phosphoesterase AM442_12500 PF00857 Isochorismatase family AM442_12500 PF00550 Phosphopantetheine attachment site AM442_12505 PF00106 short chain dehydrogenase AM442_12510 PF00005 ABC transporter AM442_12510 PF03459 TOBE domain AM442_12515 PF00528 Binding-protein-dependent transport system inner membrane component AM442_12525 PF03459 TOBE domain AM442_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_12530 PF00355 Rieske [2Fe-2S] domain AM442_12535 PF00866 Ring hydroxylating beta subunit AM442_12540 PF00175 Oxidoreductase NAD-binding domain AM442_12540 PF00970 Oxidoreductase FAD-binding domain AM442_12540 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_12545 PF14525 AraC-binding-like domain AM442_12545 PF12833 Helix-turn-helix domain AM442_12555 PF01613 Flavin reductase like domain AM442_12570 PF01738 Dienelactone hydrolase family AM442_12575 PF07690 Major Facilitator Superfamily AM442_12580 PF12833 Helix-turn-helix domain AM442_12580 PF06719 AraC-type transcriptional regulator N-terminus AM442_12600 PF00440 Bacterial regulatory proteins, tetR family AM442_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12620 PF03466 LysR substrate binding domain AM442_12625 PF01144 Coenzyme A transferase AM442_12630 PF01144 Coenzyme A transferase AM442_12635 PF02667 Short chain fatty acid transporter AM442_12640 PF02803 Thiolase, C-terminal domain AM442_12640 PF00108 Thiolase, N-terminal domain AM442_12645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12645 PF03466 LysR substrate binding domain AM442_12650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12650 PF03466 LysR substrate binding domain AM442_12665 PF10415 Fumarase C C-terminus AM442_12665 PF00206 Lyase AM442_12670 PF07715 TonB-dependent Receptor Plug Domain AM442_12670 PF00593 TonB dependent receptor AM442_12675 PF00083 Sugar (and other) transporter AM442_12690 PF00005 ABC transporter AM442_12695 PF00528 Binding-protein-dependent transport system inner membrane component AM442_12700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM442_12725 PF02525 Flavodoxin-like fold AM442_12730 PF01638 HxlR-like helix-turn-helix AM442_12735 PF06445 GyrI-like small molecule binding domain AM442_12735 PF12833 Helix-turn-helix domain AM442_12750 PF01925 Sulfite exporter TauE/SafE AM442_12755 PF04273 Putative phosphatase (DUF442) AM442_12755 PF00753 Metallo-beta-lactamase superfamily AM442_12760 PF00753 Metallo-beta-lactamase superfamily AM442_12760 PF04273 Putative phosphatase (DUF442) AM442_12765 PF00158 Sigma-54 interaction domain AM442_12765 PF00072 Response regulator receiver domain AM442_12765 PF02954 Bacterial regulatory protein, Fis family AM442_12770 PF01062 Bestrophin, RFP-TM, chloride channel AM442_12775 PF00107 Zinc-binding dehydrogenase AM442_12775 PF08240 Alcohol dehydrogenase GroES-like domain AM442_12780 PF00106 short chain dehydrogenase AM442_12785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_12785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_12790 PF00364 Biotin-requiring enzyme AM442_12790 PF02817 e3 binding domain AM442_12790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM442_12795 PF02779 Transketolase, pyrimidine binding domain AM442_12795 PF02780 Transketolase, C-terminal domain AM442_12800 PF00676 Dehydrogenase E1 component AM442_12805 PF13737 Transposase DDE domain AM442_12810 PF04055 Radical SAM superfamily AM442_12825 PF08448 PAS fold AM442_12825 PF00990 Diguanylate cyclase, GGDEF domain AM442_12830 PF01264 Chorismate synthase AM442_12835 PF05175 Methyltransferase small domain AM442_12840 PF00291 Pyridoxal-phosphate dependent enzyme AM442_12850 PF00004 ATPase family associated with various cellular activities (AAA) AM442_12850 PF01434 Peptidase family M41 AM442_12850 PF17862 AAA+ lid domain AM442_12860 PF05166 YcgL domain AM442_12905 PF06628 Catalase-related immune-responsive AM442_12905 PF00199 Catalase AM442_12910 PF00561 alpha/beta hydrolase fold AM442_12920 PF00171 Aldehyde dehydrogenase family AM442_12925 PF00107 Zinc-binding dehydrogenase AM442_12925 PF08240 Alcohol dehydrogenase GroES-like domain AM442_12930 PF00474 Sodium:solute symporter family AM442_12935 PF04341 Protein of unknown function, DUF485 AM442_12940 PF13193 AMP-binding enzyme C-terminal domain AM442_12940 PF00501 AMP-binding enzyme AM442_12950 PF02954 Bacterial regulatory protein, Fis family AM442_12950 PF06506 Propionate catabolism activator AM442_12950 PF00158 Sigma-54 interaction domain AM442_12960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_12960 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_12960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_12975 PF01636 Phosphotransferase enzyme family AM442_12980 PF00171 Aldehyde dehydrogenase family AM442_12990 PF07690 Major Facilitator Superfamily AM442_12995 PF00920 Dehydratase family AM442_13000 PF00392 Bacterial regulatory proteins, gntR family AM442_13000 PF07729 FCD domain AM442_13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_13010 PF03466 LysR substrate binding domain AM442_13015 PF13378 Enolase C-terminal domain-like AM442_13015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM442_13020 PF02426 Muconolactone delta-isomerase AM442_13025 PF00775 Dioxygenase AM442_13025 PF04444 Catechol dioxygenase N terminus AM442_13030 PF01144 Coenzyme A transferase AM442_13035 PF01144 Coenzyme A transferase AM442_13040 PF02803 Thiolase, C-terminal domain AM442_13040 PF00108 Thiolase, N-terminal domain AM442_13045 PF12146 Serine aminopeptidase, S33 AM442_13050 PF00171 Aldehyde dehydrogenase family AM442_13060 PF02728 Copper amine oxidase, N3 domain AM442_13060 PF07833 Copper amine oxidase N-terminal domain AM442_13060 PF01179 Copper amine oxidase, enzyme domain AM442_13060 PF02727 Copper amine oxidase, N2 domain AM442_13065 PF12833 Helix-turn-helix domain AM442_13065 PF02311 AraC-like ligand binding domain AM442_13070 PF01613 Flavin reductase like domain AM442_13075 PF00175 Oxidoreductase NAD-binding domain AM442_13075 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_13090 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_13090 PF00355 Rieske [2Fe-2S] domain AM442_13105 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_13110 PF01425 Amidase AM442_13120 PF07690 Major Facilitator Superfamily AM442_13130 PF00106 short chain dehydrogenase AM442_13145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_13145 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_13145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_13150 PF03466 LysR substrate binding domain AM442_13155 PF01614 Bacterial transcriptional regulator AM442_13155 PF09339 IclR helix-turn-helix domain AM442_13160 PF00753 Metallo-beta-lactamase superfamily AM442_13170 PF04143 Sulphur transport AM442_13180 PF01011 PQQ enzyme repeat AM442_13180 PF13360 PQQ-like domain AM442_13185 PF04966 Carbohydrate-selective porin, OprB family AM442_13190 PF05048 Periplasmic copper-binding protein (NosD) AM442_13195 PF01487 Type I 3-dehydroquinase AM442_13200 PF00775 Dioxygenase AM442_13205 PF00775 Dioxygenase AM442_13205 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AM442_13210 PF02627 Carboxymuconolactone decarboxylase family AM442_13215 PF07690 Major Facilitator Superfamily AM442_13220 PF00561 alpha/beta hydrolase fold AM442_13225 PF00206 Lyase AM442_13225 PF10397 Adenylosuccinate lyase C-terminus AM442_13230 PF02803 Thiolase, C-terminal domain AM442_13230 PF00108 Thiolase, N-terminal domain AM442_13235 PF01144 Coenzyme A transferase AM442_13240 PF01144 Coenzyme A transferase AM442_13245 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM442_13250 PF04977 Septum formation initiator AM442_13255 PF04239 Protein of unknown function (DUF421) AM442_13260 PF03952 Enolase, N-terminal domain AM442_13260 PF00113 Enolase, C-terminal TIM barrel domain AM442_13265 PF00793 DAHP synthetase I family AM442_13270 PF06418 CTP synthase N-terminus AM442_13270 PF00117 Glutamine amidotransferase class-I AM442_13300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_13300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_13315 PF00793 DAHP synthetase I family AM442_13320 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AM442_13325 PF07724 AAA domain (Cdc48 subfamily) AM442_13325 PF00004 ATPase family associated with various cellular activities (AAA) AM442_13325 PF17871 AAA lid domain AM442_13325 PF02861 Clp amino terminal domain, pathogenicity island component AM442_13325 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_13330 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM442_13340 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM442_13340 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM442_13355 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM442_13360 PF00291 Pyridoxal-phosphate dependent enzyme AM442_13360 PF00585 C-terminal regulatory domain of Threonine dehydratase AM442_13365 PF02254 TrkA-N domain AM442_13365 PF02080 TrkA-C domain AM442_13370 PF02386 Cation transport protein AM442_13375 PF02253 Phospholipase A1 AM442_13380 PF08367 Peptidase M16C associated AM442_13380 PF05193 Peptidase M16 inactive domain AM442_13380 PF00675 Insulinase (Peptidase family M16) AM442_13385 PF07715 TonB-dependent Receptor Plug Domain AM442_13385 PF00593 TonB dependent receptor AM442_13390 PF00294 pfkB family carbohydrate kinase AM442_13400 PF07290 Protein of unknown function (DUF1449) AM442_13420 PF01654 Cytochrome bd terminal oxidase subunit I AM442_13425 PF02322 Cytochrome bd terminal oxidase subunit II AM442_13430 PF08173 Membrane bound YbgT-like protein AM442_13445 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AM442_13455 PF02881 SRP54-type protein, helical bundle domain AM442_13455 PF00448 SRP54-type protein, GTPase domain AM442_13480 PF00478 IMP dehydrogenase / GMP reductase domain AM442_13480 PF00571 CBS domain AM442_13485 PF00202 Aminotransferase class-III AM442_13490 PF00462 Glutaredoxin AM442_13500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_13500 PF03466 LysR substrate binding domain AM442_13505 PF00557 Metallopeptidase family M24 AM442_13510 PF05525 Branched-chain amino acid transport protein AM442_13535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM442_13535 PF05524 PEP-utilising enzyme, N-terminal AM442_13535 PF00391 PEP-utilising enzyme, mobile domain AM442_13535 PF00381 PTS HPr component phosphorylation site AM442_13535 PF02896 PEP-utilising enzyme, TIM barrel domain AM442_13540 PF00294 pfkB family carbohydrate kinase AM442_13545 PF02378 Phosphotransferase system, EIIC AM442_13545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM442_13610 PF00216 Bacterial DNA-binding protein AM442_13660 PF11985 Protein of unknown function (DUF3486) AM442_13665 PF03237 Terminase-like family AM442_13685 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM442_13690 PF06074 Protein of unknown function (DUF935) AM442_13695 PF04233 Phage Mu protein F like protein AM442_13795 PF04865 Baseplate J-like protein AM442_13825 PF03707 Bacterial signalling protein N terminal repeat AM442_13825 PF00990 Diguanylate cyclase, GGDEF domain AM442_13825 PF00563 EAL domain AM442_13835 PF07995 Glucose / Sorbosone dehydrogenase AM442_13840 PF02586 SOS response associated peptidase (SRAP) AM442_13845 PF00916 Sulfate permease family AM442_13845 PF01740 STAS domain AM442_13850 PF05922 Peptidase inhibitor I9 AM442_13850 PF00082 Subtilase family AM442_13860 PF00324 Amino acid permease AM442_13865 PF00266 Aminotransferase class-V AM442_13870 PF01037 Lrp/AsnC ligand binding domain AM442_13900 PF13737 Transposase DDE domain AM442_13905 PF13419 Haloacid dehalogenase-like hydrolase AM442_13910 PF01479 S4 domain AM442_13915 PF00154 recA bacterial DNA recombination protein AM442_13920 PF02631 RecX family AM442_13935 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AM442_13935 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_13940 PF07977 FabA-like domain AM442_13945 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_13945 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM442_13955 PF07244 Surface antigen variable number repeat AM442_13955 PF01103 Surface antigen AM442_13960 PF13180 PDZ domain AM442_13960 PF17820 PDZ domain AM442_13960 PF02163 Peptidase family M50 AM442_13965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM442_13965 PF13288 DXP reductoisomerase C-terminal domain AM442_13965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM442_13975 PF01255 Putative undecaprenyl diphosphate synthase AM442_13980 PF01765 Ribosome recycling factor AM442_13985 PF00696 Amino acid kinase family AM442_13990 PF00919 Uncharacterized protein family UPF0004 AM442_13990 PF04055 Radical SAM superfamily AM442_13990 PF18693 TRAM domain AM442_14000 PF00989 PAS fold AM442_14000 PF00512 His Kinase A (phospho-acceptor) domain AM442_14000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_14005 PF02954 Bacterial regulatory protein, Fis family AM442_14005 PF00072 Response regulator receiver domain AM442_14005 PF00158 Sigma-54 interaction domain AM442_14010 PF00440 Bacterial regulatory proteins, tetR family AM442_14015 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM442_14015 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM442_14025 PF02542 YgbB family AM442_14035 PF01266 FAD dependent oxidoreductase AM442_14060 PF00206 Lyase AM442_14060 PF10415 Fumarase C C-terminus AM442_14065 PF16363 GDP-mannose 4,6 dehydratase AM442_14070 PF02635 DsrE/DsrF-like family AM442_14090 PF00892 EamA-like transporter family AM442_14095 PF00155 Aminotransferase class I and II AM442_14095 PF00392 Bacterial regulatory proteins, gntR family AM442_14100 PF01638 HxlR-like helix-turn-helix AM442_14105 PF03454 MoeA C-terminal region (domain IV) AM442_14105 PF00994 Probable molybdopterin binding domain AM442_14105 PF03453 MoeA N-terminal region (domain I and II) AM442_14110 PF01967 MoaC family AM442_14110 PF00994 Probable molybdopterin binding domain AM442_14115 PF02391 MoaE protein AM442_14125 PF04055 Radical SAM superfamily AM442_14125 PF06463 Molybdenum Cofactor Synthesis C AM442_14130 PF01568 Molydopterin dinucleotide binding domain AM442_14130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM442_14130 PF00384 Molybdopterin oxidoreductase AM442_14135 PF12804 MobA-like NTP transferase domain AM442_14140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM442_14140 PF01568 Molydopterin dinucleotide binding domain AM442_14140 PF00384 Molybdopterin oxidoreductase AM442_14140 PF04324 BFD-like [2Fe-2S] binding domain AM442_14145 PF04324 BFD-like [2Fe-2S] binding domain AM442_14145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM442_14145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM442_14145 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM442_14145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_14150 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM442_14150 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_14150 PF04324 BFD-like [2Fe-2S] binding domain AM442_14150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM442_14150 PF13806 Rieske-like [2Fe-2S] domain AM442_14150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM442_14160 PF00072 Response regulator receiver domain AM442_14160 PF00486 Transcriptional regulatory protein, C terminal AM442_14165 PF00005 ABC transporter AM442_14170 PF11799 impB/mucB/samB family C-terminal domain AM442_14170 PF00817 impB/mucB/samB family AM442_14170 PF13438 Domain of unknown function (DUF4113) AM442_14175 PF01220 Dehydroquinase class II AM442_14180 PF00364 Biotin-requiring enzyme AM442_14185 PF00289 Biotin carboxylase, N-terminal domain AM442_14185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_14185 PF02785 Biotin carboxylase C-terminal domain AM442_14200 PF12832 MFS_1 like family AM442_14230 PF01645 Conserved region in glutamate synthase AM442_14245 PF01565 FAD binding domain AM442_14245 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM442_14250 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM442_14260 PF00465 Iron-containing alcohol dehydrogenase AM442_14265 PF03061 Thioesterase superfamily AM442_14270 PF05506 Domain of unknown function (DUF756) AM442_14270 PF04185 Phosphoesterase family AM442_14275 PF12170 DNA polymerase III tau subunit V interacting with alpha AM442_14275 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM442_14275 PF12169 DNA polymerase III subunits gamma and tau domain III AM442_14280 PF07690 Major Facilitator Superfamily AM442_14290 PF00144 Beta-lactamase AM442_14310 PF00108 Thiolase, N-terminal domain AM442_14310 PF02803 Thiolase, C-terminal domain AM442_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_14320 PF03466 LysR substrate binding domain AM442_14330 PF01810 LysE type translocator AM442_14335 PF01037 Lrp/AsnC ligand binding domain AM442_14340 PF03594 Benzoate membrane transport protein AM442_14345 PF02308 MgtC family AM442_14350 PF00690 Cation transporter/ATPase, N-terminus AM442_14350 PF00689 Cation transporting ATPase, C-terminus AM442_14370 PF00582 Universal stress protein family AM442_14375 PF12848 ABC transporter AM442_14375 PF00005 ABC transporter AM442_14400 PF07715 TonB-dependent Receptor Plug Domain AM442_14400 PF00593 TonB dependent receptor AM442_14435 PF00924 Mechanosensitive ion channel AM442_14440 PF07715 TonB-dependent Receptor Plug Domain AM442_14440 PF00593 TonB dependent receptor AM442_14445 PF00440 Bacterial regulatory proteins, tetR family AM442_14460 PF01037 Lrp/AsnC ligand binding domain AM442_14465 PF01817 Chorismate mutase type II AM442_14485 PF01433 Peptidase family M1 domain AM442_14485 PF11940 Domain of unknown function (DUF3458) Ig-like fold AM442_14485 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AM442_14500 PF02110 Hydroxyethylthiazole kinase family AM442_14510 PF05970 PIF1-like helicase AM442_14510 PF14493 Helix-turn-helix domain AM442_14515 PF00465 Iron-containing alcohol dehydrogenase AM442_14530 PF00171 Aldehyde dehydrogenase family AM442_14535 PF13520 Amino acid permease AM442_14540 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM442_14545 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM442_14550 PF00117 Glutamine amidotransferase class-I AM442_14550 PF00958 GMP synthase C terminal domain AM442_14550 PF02540 NAD synthase AM442_14555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AM442_14555 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM442_14560 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM442_14565 PF00149 Calcineurin-like phosphoesterase AM442_14575 PF00881 Nitroreductase family AM442_14585 PF17209 Hfq protein AM442_14595 PF08676 MutL C terminal dimerisation domain AM442_14595 PF01119 DNA mismatch repair protein, C-terminal domain AM442_14600 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM442_14605 PF00849 RNA pseudouridylate synthase AM442_14605 PF01479 S4 domain AM442_14620 PF01479 S4 domain AM442_14620 PF00849 RNA pseudouridylate synthase AM442_14630 PF04284 Protein of unknown function (DUF441) AM442_14635 PF03466 LysR substrate binding domain AM442_14635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_14650 PF07690 Major Facilitator Superfamily AM442_14655 PF00027 Cyclic nucleotide-binding domain AM442_14655 PF00520 Ion transport protein AM442_14670 PF00330 Aconitase family (aconitate hydratase) AM442_14670 PF11791 Aconitate B N-terminal domain AM442_14670 PF06434 Aconitate hydratase 2 N-terminus AM442_14685 PF00717 Peptidase S24-like AM442_14690 PF13438 Domain of unknown function (DUF4113) AM442_14690 PF11799 impB/mucB/samB family C-terminal domain AM442_14690 PF00817 impB/mucB/samB family AM442_14690 PF11798 IMS family HHH motif AM442_14795 PF00712 DNA polymerase III beta subunit, N-terminal domain AM442_14795 PF02767 DNA polymerase III beta subunit, central domain AM442_14795 PF02768 DNA polymerase III beta subunit, C-terminal domain AM442_14835 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AM442_15030 PF01695 IstB-like ATP binding protein AM442_15040 PF00145 C-5 cytosine-specific DNA methylase AM442_15125 PF00929 Exonuclease AM442_15165 PF07244 Surface antigen variable number repeat AM442_15165 PF01103 Surface antigen AM442_15165 PF17243 POTRA domain TamA domain 1 AM442_15170 PF07690 Major Facilitator Superfamily AM442_15175 PF03232 Ubiquinone biosynthesis protein COQ7 AM442_15185 PF00120 Glutamine synthetase, catalytic domain AM442_15190 PF00072 Response regulator receiver domain AM442_15190 PF00486 Transcriptional regulatory protein, C terminal AM442_15195 PF00512 His Kinase A (phospho-acceptor) domain AM442_15195 PF13493 Domain of unknown function (DUF4118) AM442_15195 PF02702 Osmosensitive K+ channel His kinase sensor domain AM442_15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_15200 PF02669 K+-transporting ATPase, c chain AM442_15210 PF03814 Potassium-transporting ATPase A subunit AM442_15225 PF03109 ABC1 family AM442_15230 PF00899 ThiF family AM442_15235 PF01613 Flavin reductase like domain AM442_15240 PF13193 AMP-binding enzyme C-terminal domain AM442_15240 PF00501 AMP-binding enzyme AM442_15245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_15245 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_15245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_15250 PF00106 short chain dehydrogenase AM442_15255 PF12833 Helix-turn-helix domain AM442_15260 PF13847 Methyltransferase domain AM442_15260 PF17827 PrmC N-terminal domain AM442_15265 PF03462 PCRF domain AM442_15265 PF00472 RF-1 domain AM442_15275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_15275 PF03466 LysR substrate binding domain AM442_15295 PF00296 Luciferase-like monooxygenase AM442_15305 PF13994 PgaD-like protein AM442_15310 PF00535 Glycosyl transferase family 2 AM442_15315 PF14883 Hypothetical glycosyl hydrolase family 13 AM442_15315 PF01522 Polysaccharide deacetylase AM442_15330 PF03618 Kinase/pyrophosphorylase AM442_15335 PF02896 PEP-utilising enzyme, TIM barrel domain AM442_15335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM442_15335 PF00391 PEP-utilising enzyme, mobile domain AM442_15345 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM442_15345 PF06481 COX Aromatic Rich Motif AM442_15350 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM442_15355 PF00510 Cytochrome c oxidase subunit III AM442_15360 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AM442_15365 PF01040 UbiA prenyltransferase family AM442_15370 PF01250 Ribosomal protein S6 AM442_15375 PF01084 Ribosomal protein S18 AM442_15380 PF01281 Ribosomal protein L9, N-terminal domain AM442_15380 PF03948 Ribosomal protein L9, C-terminal domain AM442_15385 PF00772 DnaB-like helicase N terminal domain AM442_15385 PF03796 DnaB-like helicase C terminal domain AM442_15390 PF01168 Alanine racemase, N-terminal domain AM442_15390 PF00842 Alanine racemase, C-terminal domain AM442_15400 PF01841 Transglutaminase-like superfamily AM442_15400 PF08379 Bacterial transglutaminase-like N-terminal region AM442_15410 PF14403 Circularly permuted ATP-grasp type 2 AM442_15425 PF13932 GidA associated domain AM442_15425 PF01134 Glucose inhibited division protein A AM442_15445 PF02954 Bacterial regulatory protein, Fis family AM442_15450 PF02142 MGS-like domain AM442_15450 PF01808 AICARFT/IMPCHase bienzyme AM442_15455 PF02844 Phosphoribosylglycinamide synthetase, N domain AM442_15455 PF02843 Phosphoribosylglycinamide synthetase, C domain AM442_15455 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM442_15460 PF03180 NLPA lipoprotein AM442_15465 PF09383 NIL domain AM442_15465 PF00005 ABC transporter AM442_15470 PF00528 Binding-protein-dependent transport system inner membrane component AM442_15475 PF00753 Metallo-beta-lactamase superfamily AM442_15475 PF16123 Hydroxyacylglutathione hydrolase C-terminus AM442_15485 PF00375 Sodium:dicarboxylate symporter family AM442_15505 PF07995 Glucose / Sorbosone dehydrogenase AM442_15510 PF00892 EamA-like transporter family AM442_15515 PF01177 Asp/Glu/Hydantoin racemase AM442_15525 PF02470 MlaD protein AM442_15530 PF04403 Paraquat-inducible protein A AM442_15540 PF06826 Predicted Permease Membrane Region AM442_15540 PF02080 TrkA-C domain AM442_15545 PF00155 Aminotransferase class I and II AM442_15550 PF13737 Transposase DDE domain AM442_15575 PF00083 Sugar (and other) transporter AM442_15575 PF08946 Osmosensory transporter coiled coil AM442_15610 PF13737 Transposase DDE domain AM442_15615 PF13737 Transposase DDE domain AM442_15630 PF00392 Bacterial regulatory proteins, gntR family AM442_15630 PF07729 FCD domain AM442_15640 PF03616 Sodium/glutamate symporter AM442_15645 PF00561 alpha/beta hydrolase fold AM442_15670 PF04076 Bacterial OB fold (BOF) protein AM442_15705 PF00324 Amino acid permease AM442_15710 PF00171 Aldehyde dehydrogenase family AM442_15715 PF00202 Aminotransferase class-III AM442_15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_15720 PF03466 LysR substrate binding domain AM442_15760 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM442_15760 PF08479 POTRA domain, ShlB-type AM442_15760 PF17287 POTRA domain AM442_15785 PF00069 Protein kinase domain AM442_15805 PF00814 Glycoprotease family AM442_15810 PF01165 Ribosomal protein S21 AM442_15815 PF09424 Yqey-like protein AM442_15820 PF01435 Peptidase family M48 AM442_15825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM442_15825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM442_15840 PF00156 Phosphoribosyl transferase domain AM442_15845 PF02674 Colicin V production protein AM442_15850 PF01180 Dihydroorotate dehydrogenase AM442_15870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM442_15870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM442_15875 PF00881 Nitroreductase family AM442_15885 PF00270 DEAD/DEAH box helicase AM442_15885 PF00271 Helicase conserved C-terminal domain AM442_15890 PF00313 'Cold-shock' DNA-binding domain AM442_15900 PF04545 Sigma-70, region 4 AM442_15900 PF04542 Sigma-70 region 2 AM442_15900 PF00140 Sigma-70 factor, region 1.2 AM442_15905 PF04241 Protein of unknown function (DUF423) AM442_15915 PF05690 Thiazole biosynthesis protein ThiG AM442_15925 PF03883 Peroxide stress protein YaaA AM442_15935 PF00753 Metallo-beta-lactamase superfamily AM442_15940 PF01546 Peptidase family M20/M25/M40 AM442_15940 PF07687 Peptidase dimerisation domain AM442_15950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM442_15955 PF01817 Chorismate mutase type II AM442_15955 PF01842 ACT domain AM442_15955 PF00800 Prephenate dehydratase AM442_15960 PF00756 Putative esterase AM442_15965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_15965 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_15965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_15970 PF00375 Sodium:dicarboxylate symporter family AM442_15980 PF00591 Glycosyl transferase family, a/b domain AM442_15980 PF02885 Glycosyl transferase family, helical bundle domain AM442_15985 PF07023 Protein of unknown function (DUF1315) AM442_15990 PF01513 ATP-NAD kinase AM442_15995 PF00905 Penicillin binding protein transpeptidase domain AM442_15995 PF00912 Transglycosylase AM442_15995 PF14814 Bifunctional transglycosylase second domain AM442_16005 PF00293 NUDIX domain AM442_16015 PF00512 His Kinase A (phospho-acceptor) domain AM442_16015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_16015 PF08521 Two-component sensor kinase N-terminal AM442_16020 PF00072 Response regulator receiver domain AM442_16020 PF00486 Transcriptional regulatory protein, C terminal AM442_16030 PF00437 Type II/IV secretion system protein AM442_16040 PF18389 TrmO C-terminal domain AM442_16040 PF01980 tRNA-methyltransferase O AM442_16045 PF00175 Oxidoreductase NAD-binding domain AM442_16045 PF00970 Oxidoreductase FAD-binding domain AM442_16050 PF02567 Phenazine biosynthesis-like protein AM442_16055 PF00392 Bacterial regulatory proteins, gntR family AM442_16055 PF00155 Aminotransferase class I and II AM442_16065 PF00037 4Fe-4S binding domain AM442_16070 PF00893 Small Multidrug Resistance protein AM442_16075 PF00005 ABC transporter AM442_16080 PF00528 Binding-protein-dependent transport system inner membrane component AM442_16085 PF00528 Binding-protein-dependent transport system inner membrane component AM442_16090 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_16100 PF13533 Biotin-lipoyl like AM442_16105 PF00873 AcrB/AcrD/AcrF family AM442_16115 PF00464 Serine hydroxymethyltransferase AM442_16190 PF07927 HicA toxin of bacterial toxin-antitoxin, AM442_16195 PF01381 Helix-turn-helix AM442_16195 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AM442_16260 PF00574 Clp protease AM442_16270 PF04860 Phage portal protein AM442_16375 PF01555 DNA methylase AM442_16380 PF00772 DnaB-like helicase N terminal domain AM442_16380 PF14528 LAGLIDADG-like domain AM442_16380 PF03796 DnaB-like helicase C terminal domain AM442_16485 PF00005 ABC transporter AM442_16490 PF01061 ABC-2 type transporter AM442_16495 PF14489 QueF-like protein AM442_16495 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM442_16505 PF01098 Cell cycle protein AM442_16510 PF13406 Transglycosylase SLT domain AM442_16515 PF05036 Sporulation related domain AM442_16515 PF03330 Lytic transglycolase AM442_16535 PF12833 Helix-turn-helix domain AM442_16545 PF00889 Elongation factor TS AM442_16550 PF00318 Ribosomal protein S2 AM442_16555 PF00557 Metallopeptidase family M24 AM442_16565 PF07690 Major Facilitator Superfamily AM442_16575 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_16575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_16580 PF04055 Radical SAM superfamily AM442_16585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_16585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_16585 PF09317 Domain of unknown function (DUF1974) AM442_16600 PF05221 S-adenosyl-L-homocysteine hydrolase AM442_16600 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM442_16605 PF02219 Methylenetetrahydrofolate reductase AM442_16610 PF04452 RNA methyltransferase AM442_16625 PF00563 EAL domain AM442_16625 PF03707 Bacterial signalling protein N terminal repeat AM442_16625 PF00990 Diguanylate cyclase, GGDEF domain AM442_16630 PF01515 Phosphate acetyl/butaryl transferase AM442_16630 PF03949 Malic enzyme, NAD binding domain AM442_16630 PF00390 Malic enzyme, N-terminal domain AM442_16635 PF12627 Probable RNA and SrmB- binding site of polymerase A AM442_16635 PF01743 Poly A polymerase head domain AM442_16640 PF13180 PDZ domain AM442_16645 PF01784 NIF3 (NGG1p interacting factor 3) AM442_16650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM442_16650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM442_16685 PF01040 UbiA prenyltransferase family AM442_16690 PF04345 Chorismate lyase AM442_16700 PF00854 POT family AM442_16710 PF00117 Glutamine amidotransferase class-I AM442_16715 PF11838 ERAP1-like C-terminal domain AM442_16715 PF01433 Peptidase family M1 domain AM442_16720 PF07715 TonB-dependent Receptor Plug Domain AM442_16720 PF00593 TonB dependent receptor AM442_16725 PF02885 Glycosyl transferase family, helical bundle domain AM442_16725 PF00591 Glycosyl transferase family, a/b domain AM442_16730 PF00218 Indole-3-glycerol phosphate synthase AM442_16745 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM442_16745 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM442_16750 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_16750 PF01799 [2Fe-2S] binding domain AM442_16765 PF00144 Beta-lactamase AM442_16780 PF05675 Protein of unknown function (DUF817) AM442_16785 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM442_16795 PF00425 chorismate binding enzyme AM442_16805 PF00975 Thioesterase domain AM442_16810 PF00005 ABC transporter AM442_16810 PF00664 ABC transporter transmembrane region AM442_16815 PF00664 ABC transporter transmembrane region AM442_16815 PF00005 ABC transporter AM442_16825 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM442_16830 PF00550 Phosphopantetheine attachment site AM442_16830 PF00857 Isochorismatase family AM442_16835 PF00501 AMP-binding enzyme AM442_16835 PF13193 AMP-binding enzyme C-terminal domain AM442_16840 PF00668 Condensation domain AM442_16840 PF00550 Phosphopantetheine attachment site AM442_16840 PF00501 AMP-binding enzyme AM442_16845 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM442_16850 PF00593 TonB dependent receptor AM442_16850 PF07715 TonB-dependent Receptor Plug Domain AM442_16855 PF01497 Periplasmic binding protein AM442_16860 PF00005 ABC transporter AM442_16865 PF01032 FecCD transport family AM442_16870 PF01032 FecCD transport family AM442_16875 PF13193 AMP-binding enzyme C-terminal domain AM442_16875 PF00668 Condensation domain AM442_16875 PF00550 Phosphopantetheine attachment site AM442_16875 PF00501 AMP-binding enzyme AM442_16875 PF00975 Thioesterase domain AM442_16880 PF00550 Phosphopantetheine attachment site AM442_16880 PF00668 Condensation domain AM442_16880 PF00501 AMP-binding enzyme AM442_16880 PF13193 AMP-binding enzyme C-terminal domain AM442_16890 PF13309 HTH domain AM442_16890 PF08348 YheO-like PAS domain AM442_16895 PF00291 Pyridoxal-phosphate dependent enzyme AM442_16900 PF02678 Pirin AM442_16900 PF17954 Quercetinase C-terminal cupin domain AM442_16925 PF04328 Selenoprotein, putative AM442_16930 PF02554 Carbon starvation protein CstA AM442_16930 PF13722 5TM C-terminal transporter carbon starvation CstA AM442_16935 PF08207 Elongation factor P (EF-P) KOW-like domain AM442_16935 PF01132 Elongation factor P (EF-P) OB domain AM442_16935 PF09285 Elongation factor P, C-terminal AM442_16940 PF04055 Radical SAM superfamily AM442_16950 PF12792 CSS motif domain associated with EAL AM442_16950 PF00563 EAL domain AM442_16955 PF01197 Ribosomal protein L31 AM442_16960 PF13593 SBF-like CPA transporter family (DUF4137) AM442_16965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_16970 PF07690 Major Facilitator Superfamily AM442_16975 PF13654 AAA domain AM442_16975 PF05362 Lon protease (S16) C-terminal proteolytic domain AM442_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_16980 PF03466 LysR substrate binding domain AM442_16985 PF01476 LysM domain AM442_16985 PF01551 Peptidase family M23 AM442_16990 PF01975 Survival protein SurE AM442_17005 PF00768 D-alanyl-D-alanine carboxypeptidase AM442_17005 PF07943 Penicillin-binding protein 5, C-terminal domain AM442_17010 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_17015 PF13344 Haloacid dehalogenase-like hydrolase AM442_17015 PF00293 NUDIX domain AM442_17025 PF04356 Protein of unknown function (DUF489) AM442_17030 PF00206 Lyase AM442_17030 PF08328 Adenylosuccinate lyase C-terminal AM442_17050 PF01343 Peptidase family S49 AM442_17050 PF08496 Peptidase family S49 N-terminal AM442_17055 PF00005 ABC transporter AM442_17060 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17065 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17070 PF12849 PBP superfamily domain AM442_17075 PF00324 Amino acid permease AM442_17080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_17080 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_17080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_17085 PF01037 Lrp/AsnC ligand binding domain AM442_17090 PF00171 Aldehyde dehydrogenase family AM442_17095 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM442_17100 PF00202 Aminotransferase class-III AM442_17110 PF17754 MftR C-terminal domain AM442_17110 PF00440 Bacterial regulatory proteins, tetR family AM442_17120 PF00487 Fatty acid desaturase AM442_17125 PF00970 Oxidoreductase FAD-binding domain AM442_17125 PF00175 Oxidoreductase NAD-binding domain AM442_17125 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_17130 PF00440 Bacterial regulatory proteins, tetR family AM442_17140 PF18337 RapA N-terminal Tudor like domain AM442_17140 PF00176 SNF2 family N-terminal domain AM442_17140 PF00271 Helicase conserved C-terminal domain AM442_17140 PF18339 RapA N-terminal Tudor like domain 1 AM442_17140 PF12137 RNA polymerase recycling family C-terminal AM442_17145 PF00849 RNA pseudouridylate synthase AM442_17155 PF00202 Aminotransferase class-III AM442_17160 PF02581 Thiamine monophosphate synthase AM442_17185 PF05193 Peptidase M16 inactive domain AM442_17185 PF00675 Insulinase (Peptidase family M16) AM442_17190 PF02567 Phenazine biosynthesis-like protein AM442_17200 PF03466 LysR substrate binding domain AM442_17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_17205 PF06779 Uncharacterised MFS-type transporter YbfB AM442_17225 PF00180 Isocitrate/isopropylmalate dehydrogenase AM442_17230 PF00849 RNA pseudouridylate synthase AM442_17235 PF03971 Monomeric isocitrate dehydrogenase AM442_17260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_17265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_17270 PF00875 DNA photolyase AM442_17270 PF03441 FAD binding domain of DNA photolyase AM442_17300 PF02350 UDP-N-acetylglucosamine 2-epimerase AM442_17315 PF03060 Nitronate monooxygenase AM442_17320 PF01207 Dihydrouridine synthase (Dus) AM442_17325 PF07759 Protein of unknown function (DUF1615) AM442_17335 PF00696 Amino acid kinase family AM442_17335 PF01472 PUA domain AM442_17340 PF01018 GTP1/OBG AM442_17340 PF01926 50S ribosome-binding GTPase AM442_17355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM442_17355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM442_17360 PF00892 EamA-like transporter family AM442_17370 PF17757 UvrB interaction domain AM442_17370 PF00271 Helicase conserved C-terminal domain AM442_17370 PF02151 UvrB/uvrC motif AM442_17370 PF04851 Type III restriction enzyme, res subunit AM442_17370 PF12344 Ultra-violet resistance protein B AM442_17380 PF17151 Periplasmic sensor domain AM442_17380 PF00990 Diguanylate cyclase, GGDEF domain AM442_17420 PF00106 short chain dehydrogenase AM442_17425 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AM442_17430 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM442_17435 PF02565 Recombination protein O C terminal AM442_17435 PF11967 Recombination protein O N terminal AM442_17445 PF01926 50S ribosome-binding GTPase AM442_17445 PF07650 KH domain AM442_17450 PF14622 Ribonuclease-III-like AM442_17450 PF00035 Double-stranded RNA binding motif AM442_17460 PF10502 Signal peptidase, peptidase S26 AM442_17465 PF00679 Elongation factor G C-terminus AM442_17465 PF00009 Elongation factor Tu GTP binding domain AM442_17465 PF03144 Elongation factor Tu domain 2 AM442_17465 PF06421 GTP-binding protein LepA C-terminus AM442_17475 PF13180 PDZ domain AM442_17480 PF00890 FAD binding domain AM442_17480 PF02910 Fumarate reductase flavoprotein C-term AM442_17490 PF02223 Thymidylate kinase AM442_17495 PF02618 YceG-like family AM442_17500 PF01063 Amino-transferase class IV AM442_17515 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17520 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17525 PF12857 TOBE-like domain AM442_17525 PF00005 ABC transporter AM442_17530 PF03466 LysR substrate binding domain AM442_17530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_17540 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM442_17540 PF14602 Hexapeptide repeat of succinyl-transferase AM442_17540 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_17550 PF06508 Queuosine biosynthesis protein QueC AM442_17565 PF00578 AhpC/TSA family AM442_17575 PF01467 Cytidylyltransferase-like AM442_17575 PF00293 NUDIX domain AM442_17580 PF00378 Enoyl-CoA hydratase/isomerase AM442_17585 PF01784 NIF3 (NGG1p interacting factor 3) AM442_17590 PF07690 Major Facilitator Superfamily AM442_17595 PF02769 AIR synthase related protein, C-terminal domain AM442_17595 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM442_17595 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AM442_17600 PF01966 HD domain AM442_17605 PF07499 RuvA, C-terminal domain AM442_17605 PF01330 RuvA N terminal domain AM442_17610 PF17864 RuvB AAA lid domain AM442_17610 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM442_17610 PF05491 RuvB C-terminal winged helix domain AM442_17615 PF07687 Peptidase dimerisation domain AM442_17615 PF01546 Peptidase family M20/M25/M40 AM442_17620 PF03061 Thioesterase superfamily AM442_17625 PF01618 MotA/TolQ/ExbB proton channel family AM442_17630 PF02472 Biopolymer transport protein ExbD/TolR AM442_17640 PF07676 WD40-like Beta Propeller Repeat AM442_17640 PF04052 TolB amino-terminal domain AM442_17645 PF00691 OmpA family AM442_17655 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AM442_17660 PF00588 SpoU rRNA Methylase family AM442_17660 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM442_17690 PF11638 DnaA N-terminal domain AM442_17690 PF08299 Bacterial dnaA protein helix-turn-helix AM442_17690 PF00308 Bacterial dnaA protein AM442_17695 PF01594 AI-2E family transporter AM442_17700 PF02769 AIR synthase related protein, C-terminal domain AM442_17700 PF00586 AIR synthase related protein, N-terminal domain AM442_17705 PF00551 Formyl transferase AM442_17710 PF12697 Alpha/beta hydrolase family AM442_17715 PF01343 Peptidase family S49 AM442_17715 PF06965 Na+/H+ antiporter 1 AM442_17725 PF13567 Domain of unknown function (DUF4131) AM442_17725 PF00753 Metallo-beta-lactamase superfamily AM442_17725 PF03772 Competence protein AM442_17730 PF00005 ABC transporter AM442_17735 PF12704 MacB-like periplasmic core domain AM442_17735 PF02687 FtsX-like permease family AM442_17745 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AM442_17755 PF00266 Aminotransferase class-V AM442_17765 PF13533 Biotin-lipoyl like AM442_17810 PF00521 DNA gyrase/topoisomerase IV, subunit A AM442_17810 PF03989 DNA gyrase C-terminal domain, beta-propeller AM442_17815 PF01012 Electron transfer flavoprotein domain AM442_17815 PF00766 Electron transfer flavoprotein FAD-binding domain AM442_17820 PF01012 Electron transfer flavoprotein domain AM442_17825 PF02899 Phage integrase, N-terminal SAM-like domain AM442_17825 PF00589 Phage integrase family AM442_17830 PF01810 LysE type translocator AM442_17835 PF01678 Diaminopimelate epimerase AM442_17840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM442_17840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM442_17850 PF00324 Amino acid permease AM442_17855 PF18073 Rubredoxin metal binding domain AM442_17865 PF00152 tRNA synthetases class II (D, K and N) AM442_17870 PF11890 Domain of unknown function (DUF3410) AM442_17870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM442_17870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM442_17875 PF06803 Protein of unknown function (DUF1232) AM442_17880 PF02634 FdhD/NarQ family AM442_17885 PF00384 Molybdopterin oxidoreductase AM442_17890 PF02595 Glycerate kinase family AM442_17905 PF00881 Nitroreductase family AM442_17955 PF09857 Putative toxin of bacterial toxin-antitoxin pair AM442_17965 PF00975 Thioesterase domain AM442_17965 PF00550 Phosphopantetheine attachment site AM442_17965 PF13193 AMP-binding enzyme C-terminal domain AM442_17965 PF00668 Condensation domain AM442_17965 PF00501 AMP-binding enzyme AM442_17985 PF03449 Transcription elongation factor, N-terminal AM442_17985 PF01272 Transcription elongation factor, GreA/GreB, C-term AM442_17990 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_17990 PF01464 Transglycosylase SLT domain AM442_18000 PF01171 PP-loop family AM442_18010 PF01464 Transglycosylase SLT domain AM442_18015 PF01435 Peptidase family M48 AM442_18025 PF00873 AcrB/AcrD/AcrF family AM442_18030 PF03009 Glycerophosphoryl diester phosphodiesterase family AM442_18040 PF01219 Prokaryotic diacylglycerol kinase AM442_18045 PF00118 TCP-1/cpn60 chaperonin family AM442_18050 PF00166 Chaperonin 10 Kd subunit AM442_18065 PF00149 Calcineurin-like phosphoesterase AM442_18070 PF00781 Diacylglycerol kinase catalytic domain AM442_18075 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AM442_18075 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AM442_18080 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AM442_18080 PF01266 FAD dependent oxidoreductase AM442_18085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM442_18085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM442_18090 PF00083 Sugar (and other) transporter AM442_18105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM442_18105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM442_18120 PF16655 PhoD-like phosphatase, N-terminal domain AM442_18120 PF09423 PhoD-like phosphatase AM442_18140 PF00809 Pterin binding enzyme AM442_18145 PF17862 AAA+ lid domain AM442_18145 PF00004 ATPase family associated with various cellular activities (AAA) AM442_18145 PF06480 FtsH Extracellular AM442_18145 PF01434 Peptidase family M41 AM442_18150 PF01728 FtsJ-like methyltransferase AM442_18155 PF01985 CRS1 / YhbY (CRM) domain AM442_18175 PF00117 Glutamine amidotransferase class-I AM442_18175 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM442_18180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_18180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM442_18180 PF02142 MGS-like domain AM442_18185 PF01272 Transcription elongation factor, GreA/GreB, C-term AM442_18185 PF03449 Transcription elongation factor, N-terminal AM442_18190 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_18195 PF00582 Universal stress protein family AM442_18200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM442_18210 PF09587 Bacterial capsule synthesis protein PGA_cap AM442_18225 PF00999 Sodium/hydrogen exchanger family AM442_18230 PF04228 Putative neutral zinc metallopeptidase AM442_18235 PF05661 Protein of unknown function (DUF808) AM442_18240 PF00579 tRNA synthetases class I (W and Y) AM442_18245 PF00549 CoA-ligase AM442_18245 PF02629 CoA binding domain AM442_18250 PF08442 ATP-grasp domain AM442_18250 PF00549 CoA-ligase AM442_18255 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_18255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_18260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM442_18260 PF00364 Biotin-requiring enzyme AM442_18260 PF02817 e3 binding domain AM442_18265 PF16870 2-oxoglutarate dehydrogenase C-terminal AM442_18265 PF16078 2-oxoglutarate dehydrogenase N-terminus AM442_18265 PF02779 Transketolase, pyrimidine binding domain AM442_18265 PF00676 Dehydrogenase E1 component AM442_18280 PF13085 2Fe-2S iron-sulfur cluster binding domain AM442_18285 PF02910 Fumarate reductase flavoprotein C-term AM442_18285 PF00890 FAD binding domain AM442_18290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM442_18295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM442_18300 PF00285 Citrate synthase, C-terminal domain AM442_18325 PF04546 Sigma-70, non-essential region AM442_18325 PF04539 Sigma-70 region 3 AM442_18325 PF04542 Sigma-70 region 2 AM442_18325 PF00140 Sigma-70 factor, region 1.2 AM442_18325 PF03979 Sigma-70 factor, region 1.1 AM442_18325 PF04545 Sigma-70, region 4 AM442_18330 PF04359 Protein of unknown function (DUF493) AM442_18335 PF03099 Biotin/lipoate A/B protein ligase family AM442_18345 PF00465 Iron-containing alcohol dehydrogenase AM442_18365 PF03358 NADPH-dependent FMN reductase AM442_18370 PF01638 HxlR-like helix-turn-helix AM442_18375 PF00588 SpoU rRNA Methylase family AM442_18380 PF10414 Sirohaem synthase dimerisation region AM442_18380 PF14824 Sirohaem biosynthesis protein central AM442_18380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM442_18385 PF02403 Seryl-tRNA synthetase N-terminal domain AM442_18385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM442_18395 PF03548 Outer membrane lipoprotein carrier protein LolA AM442_18400 PF01016 Ribosomal L27 protein AM442_18405 PF00829 Ribosomal prokaryotic L21 protein AM442_18415 PF00348 Polyprenyl synthetase AM442_18420 PF01406 tRNA synthetases class I (C) catalytic domain AM442_18420 PF09190 DALR domain AM442_18425 PF01569 PAP2 superfamily AM442_18430 PF00529 HlyD membrane-fusion protein of T1SS AM442_18430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM442_18435 PF00873 AcrB/AcrD/AcrF family AM442_18440 PF02321 Outer membrane efflux protein AM442_18445 PF01906 Putative heavy-metal-binding AM442_18450 PF01906 Putative heavy-metal-binding AM442_18470 PF08264 Anticodon-binding domain of tRNA AM442_18470 PF00133 tRNA synthetases class I (I, L, M and V) AM442_18470 PF10458 Valyl tRNA synthetase tRNA binding arm AM442_18490 PF03466 LysR substrate binding domain AM442_18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_18500 PF00909 Ammonium Transporter Family AM442_18515 PF08521 Two-component sensor kinase N-terminal AM442_18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_18515 PF00512 His Kinase A (phospho-acceptor) domain AM442_18520 PF00486 Transcriptional regulatory protein, C terminal AM442_18520 PF00072 Response regulator receiver domain AM442_18525 PF00884 Sulfatase AM442_18525 PF08019 Phosphoethanolamine transferase EptA/EptB AM442_18560 PF01734 Patatin-like phospholipase AM442_18570 PF01145 SPFH domain / Band 7 family AM442_18575 PF04237 YjbR AM442_18580 PF00348 Polyprenyl synthetase AM442_18585 PF04303 PrpF protein AM442_18590 PF00324 Amino acid permease AM442_18600 PF01965 DJ-1/PfpI family AM442_18605 PF00550 Phosphopantetheine attachment site AM442_18605 PF14765 Polyketide synthase dehydratase AM442_18605 PF00698 Acyl transferase domain AM442_18605 PF08659 KR domain AM442_18605 PF08240 Alcohol dehydrogenase GroES-like domain AM442_18605 PF08990 Erythronolide synthase docking AM442_18605 PF02801 Beta-ketoacyl synthase, C-terminal domain AM442_18605 PF00109 Beta-ketoacyl synthase, N-terminal domain AM442_18605 PF16197 Ketoacyl-synthetase C-terminal extension AM442_18605 PF09277 Erythronolide synthase, docking AM442_18610 PF06719 AraC-type transcriptional regulator N-terminus AM442_18610 PF12833 Helix-turn-helix domain AM442_18615 PF02673 Bacitracin resistance protein BacA AM442_18635 PF02525 Flavodoxin-like fold AM442_18650 PF01507 Phosphoadenosine phosphosulfate reductase family AM442_18655 PF06974 Protein of unknown function (DUF1298) AM442_18655 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AM442_18665 PF00575 S1 RNA binding domain AM442_18665 PF10150 Ribonuclease E/G family AM442_18670 PF02545 Maf-like protein AM442_18675 PF04093 rod shape-determining protein MreD AM442_18680 PF04085 rod shape-determining protein MreC AM442_18690 PF02686 Glu-tRNAGln amidotransferase C subunit AM442_18695 PF01425 Amidase AM442_18700 PF02637 GatB domain AM442_18700 PF02934 GatB/GatE catalytic domain AM442_18725 PF05649 Peptidase family M13 AM442_18725 PF01431 Peptidase family M13 AM442_18730 PF05992 SbmA/BacA-like family AM442_18735 PF13291 ACT domain AM442_18735 PF00291 Pyridoxal-phosphate dependent enzyme AM442_18740 PF01734 Patatin-like phospholipase AM442_18745 PF01235 Sodium:alanine symporter family AM442_18760 PF00881 Nitroreductase family AM442_18765 PF07690 Major Facilitator Superfamily AM442_18770 PF12805 FUSC-like inner membrane protein yccS AM442_18780 PF00258 Flavodoxin AM442_18780 PF00667 FAD binding domain AM442_18780 PF00175 Oxidoreductase NAD-binding domain AM442_18820 PF17969 L,D-transpeptidase C-terminal domain AM442_18820 PF03734 L,D-transpeptidase catalytic domain AM442_18825 PF04304 Protein of unknown function (DUF454) AM442_18835 PF08085 Entericidin EcnA/B family AM442_18840 PF07687 Peptidase dimerisation domain AM442_18840 PF01546 Peptidase family M20/M25/M40 AM442_18850 PF01584 CheW-like domain AM442_18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_18850 PF01627 Hpt domain AM442_18850 PF00072 Response regulator receiver domain AM442_18855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM442_18855 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM442_18860 PF01584 CheW-like domain AM442_18865 PF00072 Response regulator receiver domain AM442_18870 PF00072 Response regulator receiver domain AM442_18885 PF00873 AcrB/AcrD/AcrF family AM442_18890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM442_18890 PF03129 Anticodon binding domain AM442_18890 PF04073 Aminoacyl-tRNA editing domain AM442_18895 PF07411 Domain of unknown function (DUF1508) AM442_18900 PF03831 PhnA domain AM442_18900 PF08274 PhnA Zinc-Ribbon AM442_18905 PF04343 Protein of unknown function, DUF488 AM442_18915 PF01571 Aminomethyltransferase folate-binding domain AM442_18920 PF10411 Disulfide bond isomerase protein N-terminus AM442_18920 PF13098 Thioredoxin-like domain AM442_18935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_18940 PF00593 TonB dependent receptor AM442_18940 PF07715 TonB-dependent Receptor Plug Domain AM442_18945 PF02245 Methylpurine-DNA glycosylase (MPG) AM442_18950 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM442_18950 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM442_18950 PF06827 Zinc finger found in FPG and IleRS AM442_18965 PF01741 Large-conductance mechanosensitive channel, MscL AM442_18975 PF00860 Permease family AM442_18980 PF05175 Methyltransferase small domain AM442_18980 PF08468 Methyltransferase small domain N-terminal AM442_18985 PF00324 Amino acid permease AM442_18990 PF01139 tRNA-splicing ligase RtcB AM442_18995 PF00691 OmpA family AM442_18995 PF13505 Outer membrane protein beta-barrel domain AM442_19005 PF00108 Thiolase, N-terminal domain AM442_19005 PF02803 Thiolase, C-terminal domain AM442_19015 PF00893 Small Multidrug Resistance protein AM442_19025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM442_19025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM442_19030 PF01011 PQQ enzyme repeat AM442_19035 PF04966 Carbohydrate-selective porin, OprB family AM442_19040 PF02515 CoA-transferase family III AM442_19045 PF12833 Helix-turn-helix domain AM442_19045 PF02311 AraC-like ligand binding domain AM442_19050 PF02803 Thiolase, C-terminal domain AM442_19050 PF00108 Thiolase, N-terminal domain AM442_19055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_19055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_19055 PF00378 Enoyl-CoA hydratase/isomerase AM442_19080 PF03006 Haemolysin-III related AM442_19085 PF00083 Sugar (and other) transporter AM442_19085 PF07690 Major Facilitator Superfamily AM442_19095 PF01043 SecA preprotein cross-linking domain AM442_19095 PF07517 SecA DEAD-like domain AM442_19095 PF07516 SecA Wing and Scaffold domain AM442_19095 PF02810 SEC-C motif AM442_19100 PF00578 AhpC/TSA family AM442_19100 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM442_19105 PF00753 Metallo-beta-lactamase superfamily AM442_19120 PF08245 Mur ligase middle domain AM442_19120 PF02875 Mur ligase family, glutamate ligase domain AM442_19125 PF01039 Carboxyl transferase domain AM442_19130 PF00290 Tryptophan synthase alpha chain AM442_19155 PF00291 Pyridoxal-phosphate dependent enzyme AM442_19160 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM442_19165 PF07715 TonB-dependent Receptor Plug Domain AM442_19165 PF00593 TonB dependent receptor AM442_19170 PF01923 Cobalamin adenosyltransferase AM442_19175 PF03009 Glycerophosphoryl diester phosphodiesterase family AM442_19190 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM442_19195 PF00486 Transcriptional regulatory protein, C terminal AM442_19195 PF00072 Response regulator receiver domain AM442_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_19200 PF00672 HAMP domain AM442_19200 PF00512 His Kinase A (phospho-acceptor) domain AM442_19210 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_19210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_19210 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM442_19210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_19215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_19215 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM442_19215 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_19215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_19220 PF06146 Phosphate-starvation-inducible E AM442_19240 PF00593 TonB dependent receptor AM442_19240 PF07715 TonB-dependent Receptor Plug Domain AM442_19250 PF00152 tRNA synthetases class II (D, K and N) AM442_19250 PF02938 GAD domain AM442_19250 PF01336 OB-fold nucleic acid binding domain AM442_19255 PF17102 Stealth protein CR3, conserved region 3 AM442_19255 PF11380 Stealth protein CR2, conserved region 2 AM442_19255 PF17101 Stealth protein CR1, conserved region 1 AM442_19265 PF03275 UDP-galactopyranose mutase AM442_19300 PF13439 Glycosyltransferase Family 4 AM442_19300 PF00534 Glycosyl transferases group 1 AM442_19305 PF00535 Glycosyl transferase family 2 AM442_19310 PF01522 Polysaccharide deacetylase AM442_19325 PF01063 Amino-transferase class IV AM442_19330 PF08335 GlnD PII-uridylyltransferase AM442_19330 PF03710 Glutamate-ammonia ligase adenylyltransferase AM442_19335 PF00672 HAMP domain AM442_19335 PF00512 His Kinase A (phospho-acceptor) domain AM442_19335 PF01627 Hpt domain AM442_19335 PF00072 Response regulator receiver domain AM442_19335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM442_19335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_19350 PF13737 Transposase DDE domain AM442_19360 PF13737 Transposase DDE domain AM442_19375 PF02547 Queuosine biosynthesis protein AM442_19390 PF01702 Queuine tRNA-ribosyltransferase AM442_19395 PF02699 Preprotein translocase subunit AM442_19400 PF02355 Protein export membrane protein AM442_19400 PF07549 SecD/SecF GG Motif AM442_19400 PF13721 SecD export protein N-terminal TM region AM442_19405 PF07549 SecD/SecF GG Motif AM442_19405 PF02355 Protein export membrane protein AM442_19505 PF05816 Toxic anion resistance protein (TelA) AM442_19525 PF17762 HTH domain found in ParB protein AM442_19525 PF02195 ParB-like nuclease domain AM442_19530 PF13614 AAA domain AM442_19585 PF00816 H-NS histone family AM442_19595 PF00905 Penicillin binding protein transpeptidase domain AM442_19605 PF00565 Staphylococcal nuclease homologue AM442_19675 PF00817 impB/mucB/samB family AM442_19675 PF11798 IMS family HHH motif AM442_19675 PF11799 impB/mucB/samB family C-terminal domain AM442_19675 PF13438 Domain of unknown function (DUF4113) AM442_19695 PF06122 Conjugative relaxosome accessory transposon protein AM442_19710 PF06986 Type-1V conjugative transfer system mating pair stabilisation AM442_19720 PF06834 TraU protein AM442_19755 PF13098 Thioredoxin-like domain AM442_19755 PF10411 Disulfide bond isomerase protein N-terminus AM442_19790 PF01464 Transglycosylase SLT domain AM442_19805 PF00239 Resolvase, N terminal domain AM442_19805 PF02796 Helix-turn-helix domain of resolvase AM442_19825 PF00665 Integrase core domain AM442_19825 PF13936 Helix-turn-helix domain AM442_19860 PF18272 single-stranded DNA binding TraI N-terminal subdomain AM442_19860 PF08751 TrwC relaxase AM442_19860 PF18340 DNA relaxase TraI 2B/2B-like domain AM442_19860 PF07057 DNA helicase TraI AM442_19895 PF01556 DnaJ C terminal domain AM442_19895 PF00684 DnaJ central domain AM442_19895 PF00226 DnaJ domain