AM442_00010 PF04002 RadC-like JAB domain AM442_00015 PF01062 AM442_00015 AM442_00020 PF02811 PHP domain AM442_00025 PF04279 AM442_00025 AM442_00030 PF03795 YCII-related domain AM442_00040 PF01266 FAD dependent oxidoreductase AM442_00040 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM442_00045 PF00581 Rhodanese-like domain AM442_00050 PF04461 Protein of unknown function (DUF520) AM442_00055 PF14539 Domain of unknown function (DUF4442) AM442_00060 PF03061 Thioesterase superfamily AM442_00065 PF00085 Thioredoxin AM442_00070 PF12146 Putative lysophospholipase AM442_00075 PF04273 Putative phosphatase (DUF442) AM442_00085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_00085 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_00115 PF13689 AM442_00115 AM442_00120 PF00990 GGDEF domain AM442_00120 PF17152 AM442_00120 AM442_00125 PF00691 OmpA family AM442_00130 PF00149 Calcineurin-like phosphoesterase AM442_00135 PF13091 PLD-like domain AM442_00140 PF01553 Acyltransferase AM442_00145 PF01926 50S ribosome-binding GTPase AM442_00145 PF13167 AM442_00145 AM442_00145 PF16360 AM442_00145 AM442_00155 PF04172 AM442_00155 AM442_00160 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AM442_00165 PF00149 Calcineurin-like phosphoesterase AM442_00170 PF00398 Ribosomal RNA adenine dimethylase AM442_00175 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM442_00180 PF00572 Ribosomal protein L13 AM442_00185 PF00380 Ribosomal protein S9/S16 AM442_00190 PF02798 Glutathione S-transferase, N-terminal domain AM442_00195 PF04386 Stringent starvation protein B AM442_00205 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AM442_00205 PF00364 Biotin-requiring enzyme AM442_00205 PF02785 Biotin carboxylase C-terminal domain AM442_00205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_00210 PF00378 Enoyl-CoA hydratase/isomerase family AM442_00215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00215 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00220 PF01039 Carboxyl transferase domain AM442_00225 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_00230 PF07287 AM442_00230 AM442_00235 PF00440 Bacterial regulatory proteins, tetR family AM442_00240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00240 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00245 PF14066 AM442_00245 AM442_00250 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM442_00290 PF01066 CDP-alcohol phosphatidyltransferase AM442_00295 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AM442_00300 PF13640 2OG-Fe(II) oxygenase superfamily AM442_00310 PF10982 Protein of unknown function (DUF2789) AM442_00315 PF00056 lactate/malate dehydrogenase, NAD binding domain AM442_00315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM442_00320 PF00445 Ribonuclease T2 family AM442_00325 PF01464 Transglycosylase SLT domain AM442_00330 PF00919 Uncharacterized protein family UPF0004 AM442_00330 PF01938 TRAM domain AM442_00330 PF04055 Radical SAM superfamily AM442_00335 PF02562 PhoH-like protein AM442_00340 PF02130 Uncharacterized protein family UPF0054 AM442_00345 PF03544 Gram-negative bacterial TonB protein C-terminal AM442_00355 PF11306 Protein of unknown function (DUF3108) AM442_00365 PF03358 NADPH-dependent FMN reductase AM442_00370 PF03631 AM442_00370 AM442_00375 PF00892 EamA-like transporter family AM442_00385 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM442_00395 PF00881 Nitroreductase family AM442_00410 PF12710 haloacid dehalogenase-like hydrolase AM442_00430 PF00575 S1 RNA binding domain AM442_00430 PF00773 RNB domain AM442_00430 PF08206 Ribonuclease B OB domain AM442_00435 PF01432 Peptidase family M3 AM442_00440 PF09526 AM442_00440 AM442_00455 PF01694 Rhomboid family AM442_00470 PF03937 Flavinator of succinate dehydrogenase AM442_00475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00475 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00480 PF00743 Flavin-binding monooxygenase-like AM442_00480 PF13450 NAD(P)-binding Rossmann-like domain AM442_00485 PF01196 Ribosomal protein L17 AM442_00490 PF01000 RNA polymerase Rpb3/RpoA insert domain AM442_00490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM442_00490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM442_00495 PF00163 Ribosomal protein S4/S9 N-terminal domain AM442_00495 PF01479 S4 domain AM442_00500 PF00411 Ribosomal protein S11 AM442_00505 PF00416 Ribosomal protein S13/S18 AM442_00510 PF00444 Ribosomal protein L36 AM442_00515 PF00344 SecY translocase AM442_00520 PF00828 Ribosomal protein L18e/L15 AM442_00525 PF00327 Ribosomal protein L30p/L7e AM442_00530 PF00333 Ribosomal protein S5, N-terminal domain AM442_00530 PF03719 Ribosomal protein S5, C-terminal domain AM442_00535 PF00861 Ribosomal L18p/L5e family AM442_00540 PF00347 Ribosomal protein L6 AM442_00545 PF00410 Ribosomal protein S8 AM442_00550 PF00253 Ribosomal protein S14p/S29e AM442_00555 PF00281 Ribosomal protein L5 AM442_00555 PF00673 ribosomal L5P family C-terminus AM442_00560 PF00467 KOW motif AM442_00560 PF17136 AM442_00560 AM442_00565 PF00238 Ribosomal protein L14p/L23e AM442_00570 PF00366 Ribosomal protein S17 AM442_00575 PF00831 Ribosomal L29 protein AM442_00580 PF00252 Ribosomal protein L16p/L10e AM442_00585 PF00189 Ribosomal protein S3, C-terminal domain AM442_00585 PF07650 KH domain AM442_00590 PF00237 Ribosomal protein L22p/L17e AM442_00595 PF00203 Ribosomal protein S19 AM442_00600 PF00181 Ribosomal Proteins L2, RNA binding domain AM442_00600 PF03947 Ribosomal Proteins L2, C-terminal domain AM442_00605 PF00276 Ribosomal protein L23 AM442_00610 PF00573 Ribosomal protein L4/L1 family AM442_00615 PF00297 Ribosomal protein L3 AM442_00620 PF00338 Ribosomal protein S10p/S20e AM442_00625 PF00117 Glutamine amidotransferase class-I AM442_00630 PF01053 Cys/Met metabolism PLP-dependent enzyme AM442_00635 PF05872 AM442_00635 AM442_00645 PF00042 Globin AM442_00650 PF02082 Transcriptional regulator AM442_00655 PF01926 50S ribosome-binding GTPase AM442_00660 PF10118 AM442_00660 AM442_00665 PF00375 Sodium:dicarboxylate symporter family AM442_00670 PF13622 Thioesterase-like superfamily AM442_00675 PF01553 Acyltransferase AM442_00685 PF13460 NADH(P)-binding AM442_00690 PF00270 DEAD/DEAH box helicase AM442_00690 PF00271 Helicase conserved C-terminal domain AM442_00690 PF17191 AM442_00690 AM442_00695 PF00156 Phosphoribosyl transferase domain AM442_00700 PF00293 NUDIX domain AM442_00705 PF03641 Possible lysine decarboxylase AM442_00710 PF01544 CorA-like Mg2+ transporter protein AM442_00715 PF13466 STAS domain AM442_00720 PF05494 Toluene tolerance, Ttg2 AM442_00725 PF02470 AM442_00725 AM442_00730 PF02405 AM442_00730 AM442_00735 PF00005 ABC transporter AM442_00740 PF00270 DEAD/DEAH box helicase AM442_00740 PF00271 Helicase conserved C-terminal domain AM442_00745 PF00459 Inositol monophosphatase family AM442_00750 PF02779 Transketolase, pyrimidine binding domain AM442_00750 PF02780 Transketolase, C-terminal domain AM442_00750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM442_00755 PF00925 GTP cyclohydrolase II AM442_00760 PF01218 Coproporphyrinogen III oxidase AM442_00765 PF01488 Shikimate / quinate 5-dehydrogenase AM442_00765 PF08501 Shikimate dehydrogenase substrate binding domain AM442_00775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_00775 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_00775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_00775 PF12418 AM442_00775 AM442_00775 PF12806 AM442_00775 AM442_00785 PF04024 AM442_00785 AM442_00790 PF00571 CBS domain AM442_00790 PF04982 AM442_00790 AM442_00795 PF13566 AM442_00795 AM442_00805 PF07007 Protein of unknown function (DUF1311) AM442_00815 PF02091 Glycyl-tRNA synthetase alpha subunit AM442_00820 PF02092 AM442_00820 AM442_00820 PF05746 DALR anticodon binding domain AM442_00825 PF13304 AAA domain AM442_00835 PF03795 YCII-related domain AM442_00840 PF00892 EamA-like transporter family AM442_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_00855 PF03466 LysR substrate binding domain AM442_00870 PF00082 Subtilase family AM442_00885 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM442_00890 PF04996 Succinylarginine dihydrolase AM442_00895 PF00171 Aldehyde dehydrogenase family AM442_00900 PF04958 Arginine N-succinyltransferase beta subunit AM442_00905 PF00202 Aminotransferase class-III AM442_00910 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM442_00910 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM442_00915 PF00324 Amino acid permease AM442_00925 PF08241 Methyltransferase domain AM442_00940 PF10107 AM442_00940 AM442_00945 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM442_00950 PF01594 AM442_00950 AM442_00955 PF00080 Copper/zinc superoxide dismutase (SODC) AM442_00960 PF12805 AM442_00960 AM442_00960 PF13515 AM442_00960 AM442_00965 PF07690 Major Facilitator Superfamily AM442_00975 PF02525 Flavodoxin-like fold AM442_00980 PF03992 Antibiotic biosynthesis monooxygenase AM442_01005 PF01565 FAD binding domain AM442_01005 PF02913 FAD linked oxidases, C-terminal domain AM442_01010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM442_01010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM442_01015 PF00892 EamA-like transporter family AM442_01020 PF00892 EamA-like transporter family AM442_01025 PF01814 Hemerythrin HHE cation binding domain AM442_01030 PF01925 AM442_01030 AM442_01035 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM442_01035 PF09157 Pseudouridine synthase II TruB, C-terminal AM442_01035 PF16198 AM442_01035 AM442_01040 PF03280 Proteobacterial lipase chaperone protein AM442_01045 PF00561 alpha/beta hydrolase fold AM442_01050 PF01245 Ribosomal protein L19 AM442_01055 PF01746 tRNA (Guanine-1)-methyltransferase AM442_01060 PF01782 RimM N-terminal domain AM442_01060 PF05239 PRC-barrel domain AM442_01065 PF00886 Ribosomal protein S16 AM442_01070 PF07963 Prokaryotic N-terminal methylation motif AM442_01070 PF16732 AM442_01070 AM442_01075 PF07963 Prokaryotic N-terminal methylation motif AM442_01075 PF16732 AM442_01075 AM442_01080 PF05567 Neisseria PilC beta-propeller domain AM442_01080 PF13519 von Willebrand factor type A domain AM442_01090 PF07963 Prokaryotic N-terminal methylation motif AM442_01090 PF16074 AM442_01090 AM442_01095 PF07963 Prokaryotic N-terminal methylation motif AM442_01100 PF07963 Prokaryotic N-terminal methylation motif AM442_01100 PF12019 Type II transport protein GspH AM442_01105 PF02401 LytB protein AM442_01110 PF00625 Guanylate kinase AM442_01115 PF01192 RNA polymerase Rpb6 AM442_01125 PF02824 TGS domain AM442_01125 PF13328 HD domain AM442_01130 PF01042 Endoribonuclease L-PSP AM442_01135 PF04324 BFD-like [2Fe-2S] binding domain AM442_01140 PF00210 Ferritin-like domain AM442_01145 PF04932 AM442_01145 AM442_01145 PF11846 AM442_01145 AM442_01145 PF15864 AM442_01145 AM442_01150 PF00114 Pilin (bacterial filament) AM442_01150 PF07963 Prokaryotic N-terminal methylation motif AM442_01155 PF04536 TLP18 AM442_01160 PF04536 TLP18 AM442_01165 PF04011 LemA family AM442_01170 PF10118 AM442_01170 AM442_01175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_01175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM442_01180 PF00310 Glutamine amidotransferases class-II AM442_01180 PF01493 GXGXG motif AM442_01180 PF01645 Conserved region in glutamate synthase AM442_01180 PF04898 Glutamate synthase central domain AM442_01190 PF01761 3-dehydroquinate synthase AM442_01195 PF01202 Shikimate kinase AM442_01200 PF00263 AM442_01200 AM442_01200 PF03958 Bacterial type II/III secretion system short domain AM442_01200 PF07660 Secretin and TonB N terminus short domain AM442_01200 PF11741 AMIN domain AM442_01205 PF04351 Pilus assembly protein, PilP AM442_01210 PF04350 Pilus assembly protein, PilO AM442_01215 PF05137 AM442_01215 AM442_01220 PF11104 Type IV pilus assembly protein PilM; AM442_01225 PF00905 Penicillin binding protein transpeptidase domain AM442_01225 PF00912 Transglycosylase AM442_01225 PF17092 AM442_01225 AM442_01230 PF08241 Methyltransferase domain AM442_01240 PF00953 Glycosyl transferase family 4 AM442_01245 PF01225 Mur ligase family, catalytic domain AM442_01245 PF02875 Mur ligase family, glutamate ligase domain AM442_01245 PF08245 Mur ligase middle domain AM442_01250 PF02875 Mur ligase family, glutamate ligase domain AM442_01250 PF08245 Mur ligase middle domain AM442_01255 PF00905 Penicillin binding protein transpeptidase domain AM442_01255 PF03717 Penicillin-binding Protein dimerisation domain AM442_01260 PF04999 AM442_01260 AM442_01265 PF01795 MraW methylase family AM442_01270 PF13531 Bacterial extracellular solute-binding protein AM442_01280 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM442_01295 PF00324 Amino acid permease AM442_01325 PF01545 Cation efflux family AM442_01330 PF00873 AcrB/AcrD/AcrF family AM442_01335 PF16576 AM442_01335 AM442_01340 PF02321 Outer membrane efflux protein AM442_01355 PF04191 Phospholipid methyltransferase AM442_01375 PF08238 Sel1 repeat AM442_01380 PF00005 ABC transporter AM442_01380 PF12848 ABC transporter AM442_01385 PF01053 Cys/Met metabolism PLP-dependent enzyme AM442_01390 PF00106 short chain dehydrogenase AM442_01395 PF00484 Carbonic anhydrase AM442_01395 PF00916 AM442_01395 AM442_01400 PF00575 S1 RNA binding domain AM442_01400 PF09371 Tex-like protein N-terminal domain AM442_01400 PF12836 Helix-hairpin-helix motif AM442_01400 PF16921 AM442_01400 AM442_01410 PF00072 Response regulator receiver domain AM442_01410 PF00486 Transcriptional regulatory protein, C terminal AM442_01415 PF00512 His Kinase A (phospho-acceptor) domain AM442_01415 PF00672 HAMP domain AM442_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_01425 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AM442_01425 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AM442_01430 PF00583 Acetyltransferase (GNAT) family AM442_01445 PF12568 Acetyltransferase (GNAT) domain AM442_01450 PF00475 Imidazoleglycerol-phosphate dehydratase AM442_01455 PF00117 Glutamine amidotransferase class-I AM442_01460 PF05656 AM442_01460 AM442_01465 PF01612 3'-5' exonuclease AM442_01470 PF00977 Histidine biosynthesis protein AM442_01475 PF01381 Helix-turn-helix AM442_01475 PF07883 Cupin domain AM442_01480 PF00892 EamA-like transporter family AM442_01485 PF03992 Antibiotic biosynthesis monooxygenase AM442_01495 PF00313 'Cold-shock' DNA-binding domain AM442_01495 PF06961 AM442_01495 AM442_01500 PF01636 Phosphotransferase enzyme family AM442_01505 PF00977 Histidine biosynthesis protein AM442_01515 PF12625 AM442_01515 AM442_01515 PF12833 Helix-turn-helix domain AM442_01520 PF00230 Major intrinsic protein AM442_01530 PF01810 AM442_01530 AM442_01535 PF01223 DNA/RNA non-specific endonuclease AM442_01545 PF02705 AM442_01545 AM442_01565 PF00809 Pterin binding enzyme AM442_01570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_01585 PF13610 AM442_01585 AM442_01595 PF02525 Flavodoxin-like fold AM442_01605 PF01638 HxlR-like helix-turn-helix AM442_01625 PF08238 Sel1 repeat AM442_01630 PF00440 Bacterial regulatory proteins, tetR family AM442_01635 PF12833 Helix-turn-helix domain AM442_01640 PF00248 Aldo/keto reductase family AM442_01655 PF00892 EamA-like transporter family AM442_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_01660 PF03466 LysR substrate binding domain AM442_01665 PF07690 Major Facilitator Superfamily AM442_01675 PF00324 Amino acid permease AM442_01680 PF00171 Aldehyde dehydrogenase family AM442_01685 PF05899 Protein of unknown function (DUF861) AM442_01690 PF01266 FAD dependent oxidoreductase AM442_01695 PF07905 AM442_01695 AM442_01695 PF13556 PucR C-terminal helix-turn-helix domain AM442_01700 PF12625 AM442_01700 AM442_01700 PF12833 Helix-turn-helix domain AM442_01715 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM442_01720 PF13489 Methyltransferase domain AM442_01725 PF01593 Flavin containing amine oxidoreductase AM442_01730 PF02678 Pirin AM442_01730 PF05726 Pirin C-terminal cupin domain AM442_01735 PF00857 Isochorismatase family AM442_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_01740 PF03466 LysR substrate binding domain AM442_01745 PF00171 Aldehyde dehydrogenase family AM442_01750 PF00202 Aminotransferase class-III AM442_01755 PF00155 Aminotransferase class I and II AM442_01755 PF00392 Bacterial regulatory proteins, gntR family AM442_01760 PF00324 Amino acid permease AM442_01765 PF01381 Helix-turn-helix AM442_01765 PF07883 Cupin domain AM442_01770 PF03591 AM442_01770 AM442_01775 PF05437 AM442_01775 AM442_01780 PF00436 Single-strand binding protein family AM442_01785 PF07690 Major Facilitator Superfamily AM442_01790 PF04332 AM442_01790 AM442_01795 PF03070 TENA/THI-4/PQQC family AM442_01800 PF06942 AM442_01800 AM442_01805 PF06993 AM442_01805 AM442_01810 PF00107 Zinc-binding dehydrogenase AM442_01810 PF08240 Alcohol dehydrogenase GroES-like domain AM442_01815 PF00440 Bacterial regulatory proteins, tetR family AM442_01815 PF16925 AM442_01815 AM442_01820 PF00005 ABC transporter AM442_01825 PF00990 GGDEF domain AM442_01830 PF16956 AM442_01830 AM442_01835 PF02028 BCCT family transporter AM442_01840 PF07885 Ion channel AM442_01845 PF00474 Sodium:solute symporter family AM442_01850 PF04341 AM442_01850 AM442_01855 PF00072 Response regulator receiver domain AM442_01855 PF00512 His Kinase A (phospho-acceptor) domain AM442_01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_01855 PF12860 AM442_01855 AM442_01865 PF00072 Response regulator receiver domain AM442_01865 PF00196 Bacterial regulatory proteins, luxR family AM442_01870 PF03358 NADPH-dependent FMN reductase AM442_01875 PF00296 Luciferase-like monooxygenase AM442_01880 PF13412 Winged helix-turn-helix DNA-binding AM442_01885 PF00857 Isochorismatase family AM442_01890 PF00501 AMP-binding enzyme AM442_01890 PF13193 AMP-binding enzyme C-terminal domain AM442_01890 PF16177 AM442_01890 AM442_01895 PF05656 AM442_01895 AM442_01900 PF00924 Mechanosensitive ion channel AM442_01905 PF04452 RNA methyltransferase AM442_01910 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AM442_01915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_01920 PF12840 Helix-turn-helix domain AM442_01945 PF16956 AM442_01945 AM442_01950 PF01368 DHH family AM442_01950 PF02272 DHHA1 domain AM442_01955 PF01243 Pyridoxamine 5'-phosphate oxidase AM442_01955 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM442_01960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM442_01960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_01960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_01960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_01965 PF00478 IMP dehydrogenase / GMP reductase domain AM442_01965 PF00571 CBS domain AM442_01970 PF03692 AM442_01970 AM442_01975 PF00753 Metallo-beta-lactamase superfamily AM442_01980 PF00593 TonB dependent receptor AM442_01980 PF07715 TonB-dependent Receptor Plug Domain AM442_01985 PF01169 AM442_01985 AM442_01995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM442_01995 PF00364 Biotin-requiring enzyme AM442_01995 PF02817 e3 binding domain AM442_02000 PF00456 Transketolase, thiamine diphosphate binding domain AM442_02005 PF01551 Peptidase family M23 AM442_02010 PF05258 AM442_02010 AM442_02015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM442_02020 PF00091 Tubulin/FtsZ family, GTPase domain AM442_02020 PF12327 FtsZ family, C-terminal domain AM442_02025 PF02491 SHS2 domain inserted in FTSA AM442_02025 PF14450 Cell division protein FtsA AM442_02030 PF03799 Cell division protein FtsQ AM442_02030 PF08478 POTRA domain, FtsQ-type AM442_02035 PF01820 D-ala D-ala ligase N-terminus AM442_02035 PF07478 D-ala D-ala ligase C-terminus AM442_02040 PF01225 Mur ligase family, catalytic domain AM442_02040 PF02875 Mur ligase family, glutamate ligase domain AM442_02040 PF08245 Mur ligase middle domain AM442_02045 PF03033 Glycosyltransferase family 28 N-terminal domain AM442_02045 PF04101 Glycosyltransferase family 28 C-terminal domain AM442_02050 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM442_02050 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM442_02055 PF08410 AM442_02055 AM442_02065 PF00593 TonB dependent receptor AM442_02065 PF07715 TonB-dependent Receptor Plug Domain AM442_02070 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM442_02095 PF00156 Phosphoribosyl transferase domain AM442_02100 PF03372 Endonuclease/Exonuclease/phosphatase family AM442_02105 PF03960 ArsC family AM442_02110 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AM442_02115 PF07859 alpha/beta hydrolase fold AM442_02120 PF00990 GGDEF domain AM442_02140 PF13557 AM442_02140 AM442_02150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM442_02155 PF01522 Polysaccharide deacetylase AM442_02160 PF09349 OHCU decarboxylase AM442_02165 PF00576 HIUase/Transthyretin family AM442_02170 PF00860 Permease family AM442_02175 PF03502 Nucleoside-specific channel-forming protein, Tsx AM442_02180 PF01494 FAD binding domain AM442_02185 PF03561 Allantoicase repeat AM442_02190 PF04115 Ureidoglycolate hydrolase AM442_02195 PF00204 DNA gyrase B AM442_02195 PF00986 DNA gyrase B subunit, carboxyl terminus AM442_02195 PF01751 Toprim domain AM442_02195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_02200 PF05728 Uncharacterised protein family (UPF0227) AM442_02205 PF07819 PGAP1-like protein AM442_02250 PF05954 Phage late control gene D protein (GPD) AM442_02250 PF10106 AM442_02250 AM442_02250 PF13296 AM442_02250 AM442_02255 PF02600 Disulfide bond formation protein DsbB AM442_02260 PF04262 Glutamate-cysteine ligase AM442_02265 PF06041 Bacterial protein of unknown function (DUF924) AM442_02275 PF04286 AM442_02275 AM442_02280 PF00155 Aminotransferase class I and II AM442_02285 PF01554 MatE AM442_02290 PF00106 short chain dehydrogenase AM442_02300 PF00072 Response regulator receiver domain AM442_02300 PF00486 Transcriptional regulatory protein, C terminal AM442_02305 PF00512 His Kinase A (phospho-acceptor) domain AM442_02305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_02305 PF11808 AM442_02305 AM442_02305 PF13188 PAS domain AM442_02310 PF12146 Putative lysophospholipase AM442_02315 PF02666 AM442_02315 AM442_02320 PF00581 Rhodanese-like domain AM442_02325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM442_02330 PF02580 D-Tyr-tRNA(Tyr) deacylase AM442_02350 PF12710 haloacid dehalogenase-like hydrolase AM442_02350 PF13740 ACT domain AM442_02360 PF00925 GTP cyclohydrolase II AM442_02360 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM442_02365 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM442_02370 PF01029 NusB family AM442_02375 PF00586 AIR synthase related protein, N-terminal domain AM442_02375 PF02769 AIR synthase related protein, C-terminal domain AM442_02380 PF04608 Phosphatidylglycerophosphatase A AM442_02385 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_02385 PF12804 MobA-like NTP transferase domain AM442_02385 PF14602 Hexapeptide repeat of succinyl-transferase AM442_02390 PF01380 SIS domain AM442_02390 PF13522 Glutamine amidotransferase domain AM442_02395 PF01177 Asp/Glu/Hydantoin racemase AM442_02400 PF13419 Haloacid dehalogenase-like hydrolase AM442_02405 PF05960 Bacterial protein of unknown function (DUF885) AM442_02410 PF00491 Arginase family AM442_02415 PF01979 Amidohydrolase family AM442_02420 PF00324 Amino acid permease AM442_02425 PF00221 Aromatic amino acid lyase AM442_02430 PF01175 Urocanase AM442_02430 PF17391 AM442_02430 AM442_02430 PF17392 AM442_02430 AM442_02440 PF05962 HutD AM442_02460 PF01757 AM442_02460 AM442_02465 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM442_02465 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM442_02470 PF08291 Peptidase M15 AM442_02475 PF00324 Amino acid permease AM442_02480 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM442_02480 PF09298 Fumarylacetoacetase N-terminal AM442_02485 PF02798 Glutathione S-transferase, N-terminal domain AM442_02485 PF14497 Glutathione S-transferase, C-terminal domain AM442_02490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_02495 PF01614 Bacterial transcriptional regulator AM442_02495 PF09339 IclR helix-turn-helix domain AM442_02500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_02500 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AM442_02505 PF04463 AM442_02505 AM442_02510 PF01554 MatE AM442_02515 PF01758 Sodium Bile acid symporter family AM442_02520 PF00857 Isochorismatase family AM442_02525 PF00701 Dihydrodipicolinate synthetase family AM442_02535 PF01259 SAICAR synthetase AM442_02545 PF01226 Formate/nitrite transporter AM442_02550 PF00004 ATPase family associated with various cellular activities (AAA) AM442_02550 PF12002 MgsA AAA+ ATPase C terminal AM442_02550 PF16193 AM442_02550 AM442_02555 PF07995 Glucose / Sorbosone dehydrogenase AM442_02560 PF03692 AM442_02560 AM442_02565 PF07043 AM442_02565 AM442_02570 PF01738 Dienelactone hydrolase family AM442_02575 PF01230 HIT domain AM442_02580 PF00633 Helix-hairpin-helix motif AM442_02580 PF00730 HhH-GPD superfamily base excision DNA repair protein AM442_02580 PF14815 NUDIX domain AM442_02585 PF01551 Peptidase family M23 AM442_02595 PF03352 Methyladenine glycosylase AM442_02600 PF00107 Zinc-binding dehydrogenase AM442_02600 PF08240 Alcohol dehydrogenase GroES-like domain AM442_02605 PF00155 Aminotransferase class I and II AM442_02605 PF00392 Bacterial regulatory proteins, gntR family AM442_02620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_02620 PF03466 LysR substrate binding domain AM442_02625 PF00248 Aldo/keto reductase family AM442_02630 PF07690 Major Facilitator Superfamily AM442_02635 PF01852 START domain AM442_02640 PF01113 Dihydrodipicolinate reductase, N-terminus AM442_02640 PF05173 Dihydrodipicolinate reductase, C-terminus AM442_02650 PF00226 DnaJ domain AM442_02650 PF00684 DnaJ central domain AM442_02650 PF01556 DnaJ C terminal domain AM442_02660 PF00873 AcrB/AcrD/AcrF family AM442_02665 PF16576 AM442_02665 AM442_02670 PF00440 Bacterial regulatory proteins, tetR family AM442_02670 PF14246 AefR-like transcriptional repressor, C-terminal region AM442_02680 PF00860 Permease family AM442_02685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_02685 PF03466 LysR substrate binding domain AM442_02690 PF01925 AM442_02690 AM442_02700 PF00920 Dehydratase family AM442_02705 PF00551 Formyl transferase AM442_02705 PF02911 Formyl transferase, C-terminal domain AM442_02710 PF01029 NusB family AM442_02710 PF01189 NOL1/NOP2/sun family AM442_02710 PF17125 AM442_02710 AM442_02715 PF16951 AM442_02715 AM442_02720 PF00209 Sodium:neurotransmitter symporter family AM442_02765 PF00579 tRNA synthetases class I (W and Y) AM442_02770 PF03702 Uncharacterised protein family (UPF0075) AM442_02775 PF00561 alpha/beta hydrolase fold AM442_02780 PF01521 Iron-sulphur cluster biosynthesis AM442_02800 PF00005 ABC transporter AM442_02800 PF12848 ABC transporter AM442_02805 PF09335 AM442_02805 AM442_02810 PF07361 Cytochrome b562 AM442_02815 PF00204 DNA gyrase B AM442_02815 PF00986 DNA gyrase B subunit, carboxyl terminus AM442_02815 PF01751 Toprim domain AM442_02815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_02820 PF02463 RecF/RecN/SMC N terminal domain AM442_02825 PF00712 DNA polymerase III beta subunit, N-terminal domain AM442_02825 PF02767 DNA polymerase III beta subunit, central domain AM442_02825 PF02768 DNA polymerase III beta subunit, C-terminal domain AM442_02830 PF00308 Bacterial dnaA protein AM442_02830 PF08299 Bacterial dnaA protein helix-turn-helix AM442_02830 PF11638 DnaA N-terminal domain AM442_02835 PF00468 Ribosomal protein L34 AM442_02840 PF00825 Ribonuclease P AM442_02845 PF01809 AM442_02845 AM442_02850 PF02096 60Kd inner membrane protein AM442_02850 PF14849 YidC periplasmic domain AM442_02855 PF01926 50S ribosome-binding GTPase AM442_02855 PF10396 GTP-binding protein TrmE N-terminus AM442_02855 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AM442_02860 PF02583 Metal-sensitive transcriptional repressor AM442_02865 PF01545 Cation efflux family AM442_02870 PF10411 Disulfide bond isomerase protein N-terminus AM442_02870 PF13098 Thioredoxin-like domain AM442_02875 PF04226 AM442_02875 AM442_02880 PF00156 Phosphoribosyl transferase domain AM442_02885 PF01979 Amidohydrolase family AM442_02890 PF00355 Rieske [2Fe-2S] domain AM442_02895 PF03738 Glutathionylspermidine synthase preATP-grasp AM442_02905 PF03741 AM442_02905 AM442_02910 PF01569 PAP2 superfamily AM442_02915 PF06772 AM442_02915 AM442_02920 PF01225 Mur ligase family, catalytic domain AM442_02920 PF02875 Mur ligase family, glutamate ligase domain AM442_02920 PF08245 Mur ligase middle domain AM442_02925 PF04342 AM442_02925 AM442_02935 PF00731 AIR carboxylase AM442_02940 PF02222 ATP-grasp domain AM442_02945 PF01471 Putative peptidoglycan binding domain AM442_02945 PF13406 Transglycosylase SLT domain AM442_02955 PF00413 Matrixin AM442_02960 PF00413 Matrixin AM442_02965 PF00012 Hsp70 protein AM442_02970 PF01025 GrpE AM442_02995 PF07859 alpha/beta hydrolase fold AM442_03000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM442_03030 PF12796 Ankyrin repeats (3 copies) AM442_03035 PF03358 NADPH-dependent FMN reductase AM442_03040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_03045 PF01252 AM442_03045 AM442_03050 PF00133 tRNA synthetases class I (I, L, M and V) AM442_03050 PF06827 Zinc finger found in FPG and IleRS AM442_03050 PF08264 Anticodon-binding domain of tRNA AM442_03055 PF01687 Riboflavin kinase AM442_03055 PF06574 FAD synthetase AM442_03060 PF03595 Voltage-dependent anion channel AM442_03065 PF01048 Phosphorylase superfamily AM442_03070 PF00440 Bacterial regulatory proteins, tetR family AM442_03070 PF08362 YcdC-like protein, C-terminal region AM442_03075 PF00005 ABC transporter AM442_03080 PF00528 Binding-protein-dependent transport system inner membrane component AM442_03085 PF00296 Luciferase-like monooxygenase AM442_03090 PF13379 NMT1-like family AM442_03095 PF09084 NMT1/THI5 like AM442_03100 PF00583 Acetyltransferase (GNAT) family AM442_03100 PF00696 Amino acid kinase family AM442_03105 PF11776 Domain of unknown function (DUF3315) AM442_03110 PF11776 Domain of unknown function (DUF3315) AM442_03115 PF00106 short chain dehydrogenase AM442_03120 PF13419 Haloacid dehalogenase-like hydrolase AM442_03125 PF13489 Methyltransferase domain AM442_03130 PF01323 DSBA-like thioredoxin domain AM442_03135 PF13737 AM442_03135 AM442_03140 PF00440 Bacterial regulatory proteins, tetR family AM442_03145 PF00175 Oxidoreductase NAD-binding domain AM442_03145 PF00970 Oxidoreductase FAD-binding domain AM442_03150 PF00487 AM442_03150 AM442_03155 PF01138 3' exoribonuclease family, domain 1 AM442_03155 PF03725 3' exoribonuclease family, domain 2 AM442_03165 PF04185 Phosphoesterase family AM442_03165 PF05506 AM442_03165 AM442_03175 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM442_03175 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM442_03180 PF01510 N-acetylmuramoyl-L-alanine amidase AM442_03185 PF03023 AM442_03185 AM442_03190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_03190 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM442_03195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_03195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM442_03200 PF02706 Chain length determinant protein AM442_03200 PF13614 AAA domain AM442_03200 PF13807 AM442_03200 AM442_03205 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM442_03210 PF02563 Polysaccharide biosynthesis/export protein AM442_03215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM442_03215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM442_03215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM442_03220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM442_03220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM442_03225 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_03230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM442_03235 PF13440 AM442_03235 AM442_03240 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_03260 PF13692 Glycosyl transferases group 1 AM442_03265 PF14897 AM442_03265 AM442_03270 PF00534 Glycosyl transferases group 1 AM442_03270 PF13439 Glycosyltransferase Family 4 AM442_03275 PF00535 Glycosyl transferase family 2 AM442_03280 PF02397 AM442_03280 AM442_03285 PF00483 Nucleotidyl transferase AM442_03290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM442_03290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM442_03295 PF00342 Phosphoglucose isomerase AM442_03300 PF16363 AM442_03300 AM442_03330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM442_03330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_03330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_03330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_03335 PF02652 AM442_03335 AM442_03340 PF00392 Bacterial regulatory proteins, gntR family AM442_03340 PF07729 FCD domain AM442_03345 PF01070 FMN-dependent dehydrogenase AM442_03350 PF01565 FAD binding domain AM442_03350 PF09330 D-lactate dehydrogenase, membrane binding AM442_03355 PF00155 Aminotransferase class I and II AM442_03365 PF00392 Bacterial regulatory proteins, gntR family AM442_03365 PF07729 FCD domain AM442_03370 PF13714 Phosphoenolpyruvate phosphomutase AM442_03375 PF00285 Citrate synthase AM442_03380 PF00330 Aconitase family (aconitate hydratase) AM442_03380 PF00694 Aconitase C-terminal domain AM442_03395 PF13548 AM442_03395 AM442_03400 PF00293 NUDIX domain AM442_03405 PF02452 PemK-like protein AM442_03410 PF12686 AM442_03410 AM442_03430 PF00109 Beta-ketoacyl synthase, N-terminal domain AM442_03430 PF02801 Beta-ketoacyl synthase, C-terminal domain AM442_03435 PF00106 short chain dehydrogenase AM442_03440 PF06210 AM442_03440 AM442_03445 PF00849 RNA pseudouridylate synthase AM442_03450 PF06877 Regulator of ribonuclease activity B AM442_03455 PF12680 SnoaL-like domain AM442_03460 PF00593 TonB dependent receptor AM442_03460 PF07715 TonB-dependent Receptor Plug Domain AM442_03465 PF07786 AM442_03465 AM442_03470 PF01037 AsnC family AM442_03470 PF13412 Winged helix-turn-helix DNA-binding AM442_03475 PF01266 FAD dependent oxidoreductase AM442_03480 PF00842 Alanine racemase, C-terminal domain AM442_03480 PF01168 Alanine racemase, N-terminal domain AM442_03485 PF01042 Endoribonuclease L-PSP AM442_03490 PF00324 Amino acid permease AM442_03495 PF00324 Amino acid permease AM442_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_03500 PF03466 LysR substrate binding domain AM442_03505 PF00171 Aldehyde dehydrogenase family AM442_03510 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM442_03510 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM442_03515 PF00501 AMP-binding enzyme AM442_03515 PF13193 AMP-binding enzyme C-terminal domain AM442_03520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_03520 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_03520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_03525 PF00378 Enoyl-CoA hydratase/isomerase family AM442_03530 PF16113 AM442_03530 AM442_03535 PF07690 Major Facilitator Superfamily AM442_03540 PF00765 Autoinducer synthetase AM442_03545 PF16245 AM442_03545 AM442_03550 PF00196 Bacterial regulatory proteins, luxR family AM442_03550 PF03472 Autoinducer binding domain AM442_03560 PF00501 AMP-binding enzyme AM442_03565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_03565 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_03570 PF00550 Phosphopantetheine attachment site AM442_03575 PF00501 AMP-binding enzyme AM442_03575 PF00550 Phosphopantetheine attachment site AM442_03575 PF00668 Condensation domain AM442_03575 PF00975 Thioesterase domain AM442_03575 PF13193 AMP-binding enzyme C-terminal domain AM442_03580 PF03176 MMPL family AM442_03580 PF10604 Polyketide cyclase / dehydrase and lipid transport AM442_03580 PF17131 AM442_03580 AM442_03590 PF01370 NAD dependent epimerase/dehydratase family AM442_03590 PF12697 Alpha/beta hydrolase family AM442_03595 PF01648 4'-phosphopantetheinyl transferase superfamily AM442_03610 PF01722 BolA-like protein AM442_03615 PF04247 AM442_03615 AM442_03620 PF13614 AAA domain AM442_03630 PF01810 AM442_03630 AM442_03635 PF09335 AM442_03635 AM442_03640 PF07681 AM442_03640 AM442_03645 PF04286 AM442_03645 AM442_03650 PF00117 Glutamine amidotransferase class-I AM442_03650 PF00958 GMP synthase C terminal domain AM442_03650 PF02540 NAD synthase AM442_03655 PF01909 Nucleotidyltransferase domain AM442_03655 PF13427 AM442_03655 AM442_03660 PF03551 Transcriptional regulator PadR-like family AM442_03665 PF12977 Domain of Unknown Function with PDB structure (DUF3861) AM442_03670 PF02678 Pirin AM442_03670 PF05726 Pirin C-terminal cupin domain AM442_03675 PF02566 OsmC-like protein AM442_03680 PF02798 Glutathione S-transferase, N-terminal domain AM442_03680 PF14497 Glutathione S-transferase, C-terminal domain AM442_03685 PF05036 Sporulation related domain AM442_03690 PF00750 tRNA synthetases class I (R) AM442_03690 PF03485 Arginyl tRNA synthetase N terminal domain AM442_03690 PF05746 DALR anticodon binding domain AM442_03695 PF00390 Malic enzyme, N-terminal domain AM442_03695 PF03949 Malic enzyme, NAD binding domain AM442_03700 PF04261 Dyp-type peroxidase family AM442_03705 PF01810 AM442_03705 AM442_03710 PF00950 AM442_03710 AM442_03715 PF00005 ABC transporter AM442_03720 PF01475 Ferric uptake regulator family AM442_03725 PF01297 Periplasmic solute binding protein family AM442_03730 PF03899 AM442_03730 AM442_03735 PF00119 ATP synthase A chain AM442_03740 PF00137 ATP synthase subunit C AM442_03745 PF00430 ATP synthase B/B' CF(0) AM442_03750 PF00213 ATP synthase delta (OSCP) subunit AM442_03755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM442_03755 PF00306 ATP synthase alpha/beta chain, C terminal domain AM442_03755 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM442_03760 PF00231 ATP synthase AM442_03765 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM442_03765 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM442_03770 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM442_03780 PF00255 Glutathione peroxidase AM442_03785 PF12833 Helix-turn-helix domain AM442_03790 PF07690 Major Facilitator Superfamily AM442_03795 PF00440 Bacterial regulatory proteins, tetR family AM442_03800 PF00892 EamA-like transporter family AM442_03805 PF01300 Telomere recombination AM442_03810 PF02481 DNA recombination-mediator protein A AM442_03815 PF01476 LysM domain AM442_03820 PF01327 Polypeptide deformylase AM442_03825 PF11162 AM442_03825 AM442_03830 PF00593 TonB dependent receptor AM442_03830 PF07715 TonB-dependent Receptor Plug Domain AM442_03840 PF09995 AM442_03840 AM442_03845 PF00440 Bacterial regulatory proteins, tetR family AM442_03875 PF13527 Acetyltransferase (GNAT) domain AM442_03880 PF00291 Pyridoxal-phosphate dependent enzyme AM442_03885 PF01464 Transglycosylase SLT domain AM442_03890 PF03358 NADPH-dependent FMN reductase AM442_03895 PF11158 AM442_03895 AM442_03900 PF13411 MerR HTH family regulatory protein AM442_03905 PF13449 Esterase-like activity of phytase AM442_03910 PF04055 Radical SAM superfamily AM442_03910 PF08497 AM442_03910 AM442_03910 PF11842 AM442_03910 AM442_03915 PF10881 AM442_03915 AM442_03920 PF01042 Endoribonuclease L-PSP AM442_03925 PF00817 impB/mucB/samB family AM442_03925 PF11798 IMS family HHH motif AM442_03925 PF11799 impB/mucB/samB family C-terminal domain AM442_03930 PF01183 Glycosyl hydrolases family 25 AM442_03935 PF07690 Major Facilitator Superfamily AM442_03940 PF03641 Possible lysine decarboxylase AM442_03945 PF00571 CBS domain AM442_03945 PF03471 Transporter associated domain AM442_03945 PF03741 AM442_03945 AM442_03950 PF02810 SEC-C motif AM442_03955 PF03458 AM442_03955 AM442_03960 PF00083 Sugar (and other) transporter AM442_03965 PF00521 DNA gyrase/topoisomerase IV, subunit A AM442_03965 PF03989 DNA gyrase C-terminal domain, beta-propeller AM442_03970 PF00501 AMP-binding enzyme AM442_03970 PF13193 AMP-binding enzyme C-terminal domain AM442_03980 PF01124 MAPEG family AM442_03985 PF00719 Inorganic pyrophosphatase AM442_03990 PF03573 outer membrane porin, OprD family AM442_03995 PF09694 AM442_03995 AM442_04000 PF00701 Dihydrodipicolinate synthetase family AM442_04005 PF00596 Class II Aldolase and Adducin N-terminal domain AM442_04010 PF00155 Aminotransferase class I and II AM442_04010 PF00392 Bacterial regulatory proteins, gntR family AM442_04015 PF01078 Magnesium chelatase, subunit ChlI AM442_04015 PF13335 AM442_04015 AM442_04020 PF08721 TnsA endonuclease C terminal AM442_04020 PF08722 TnsA endonuclease N terminal AM442_04025 PF00665 Integrase core domain AM442_04025 PF09299 Mu transposase, C-terminal AM442_04025 PF13518 Helix-turn-helix domain AM442_04030 PF05621 AM442_04030 AM442_04035 PF06527 AM442_04035 AM442_04050 PF05425 AM442_04050 AM442_04055 PF04234 CopC domain AM442_04060 PF00122 E1-E2 ATPase AM442_04060 PF00702 haloacid dehalogenase-like hydrolase AM442_04060 PF04945 YHS domain AM442_04065 PF00512 His Kinase A (phospho-acceptor) domain AM442_04065 PF00672 HAMP domain AM442_04065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04070 PF00072 Response regulator receiver domain AM442_04070 PF00486 Transcriptional regulatory protein, C terminal AM442_04080 PF00394 Multicopper oxidase AM442_04080 PF07731 Multicopper oxidase AM442_04080 PF07732 Multicopper oxidase AM442_04085 PF05275 AM442_04085 AM442_04090 PF13411 MerR HTH family regulatory protein AM442_04095 PF01545 Cation efflux family AM442_04100 PF04023 FeoA domain AM442_04105 PF02421 Ferrous iron transport protein B AM442_04105 PF07664 AM442_04105 AM442_04105 PF07670 Nucleoside recognition AM442_04115 PF02321 Outer membrane efflux protein AM442_04120 PF11604 Copper binding periplasmic protein CusF AM442_04120 PF16576 AM442_04120 AM442_04125 PF00873 AcrB/AcrD/AcrF family AM442_04130 PF11604 Copper binding periplasmic protein CusF AM442_04145 PF14464 Prokaryotic homologs of the JAB domain AM442_04150 PF00899 ThiF family AM442_04160 PF01381 Helix-turn-helix AM442_04160 PF06114 Domain of unknown function (DUF955) AM442_04165 PF00149 Calcineurin-like phosphoesterase AM442_04180 PF01381 Helix-turn-helix AM442_04185 PF01078 Magnesium chelatase, subunit ChlI AM442_04185 PF13541 Subunit ChlI of Mg-chelatase AM442_04190 PF04380 AM442_04190 AM442_04195 PF00543 Nitrogen regulatory protein P-II AM442_04200 PF00909 Ammonium Transporter Family AM442_04205 PF03477 ATP cone domain AM442_04210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM442_04210 PF01872 RibD C-terminal domain AM442_04215 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM442_04220 PF00677 Lumazine binding domain AM442_04235 PF04364 DNA polymerase III chi subunit, HolC AM442_04240 PF00883 Cytosol aminopeptidase family, catalytic domain AM442_04240 PF02789 Cytosol aminopeptidase family, N-terminal domain AM442_04245 PF03739 AM442_04245 AM442_04250 PF03739 AM442_04250 AM442_04255 PF01676 Metalloenzyme superfamily AM442_04255 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM442_04260 PF03572 Peptidase family S41 AM442_04265 PF00072 Response regulator receiver domain AM442_04265 PF00158 Sigma-54 interaction domain AM442_04265 PF02954 Bacterial regulatory protein, Fis family AM442_04270 PF00512 His Kinase A (phospho-acceptor) domain AM442_04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04275 PF00072 Response regulator receiver domain AM442_04275 PF00196 Bacterial regulatory proteins, luxR family AM442_04280 PF00768 D-alanyl-D-alanine carboxypeptidase AM442_04285 PF00291 Pyridoxal-phosphate dependent enzyme AM442_04290 PF00742 Homoserine dehydrogenase AM442_04290 PF01842 ACT domain AM442_04290 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_04295 PF10411 Disulfide bond isomerase protein N-terminus AM442_04295 PF13098 Thioredoxin-like domain AM442_04300 PF00589 Phage integrase family AM442_04300 PF02899 Phage integrase, N-terminal SAM-like domain AM442_04305 PF04023 FeoA domain AM442_04310 PF02421 Ferrous iron transport protein B AM442_04310 PF07664 AM442_04310 AM442_04310 PF07670 Nucleoside recognition AM442_04320 PF02875 Mur ligase family, glutamate ligase domain AM442_04320 PF08245 Mur ligase middle domain AM442_04325 PF01098 AM442_04325 AM442_04330 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM442_04335 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM442_04340 PF00149 Calcineurin-like phosphoesterase AM442_04345 PF00293 NUDIX domain AM442_04350 PF01964 ThiC family AM442_04350 PF13667 ThiC-associated domain AM442_04360 PF00440 Bacterial regulatory proteins, tetR family AM442_04365 PF00892 EamA-like transporter family AM442_04370 PF02321 Outer membrane efflux protein AM442_04375 PF01895 PhoU domain AM442_04380 PF04362 Bacterial Fe(2+) trafficking AM442_04385 PF00206 Lyase AM442_04385 PF14698 Argininosuccinate lyase C-terminal AM442_04390 PF06580 AM442_04390 AM442_04395 PF00072 Response regulator receiver domain AM442_04395 PF04397 LytTr DNA-binding domain AM442_04400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM442_04400 PF03900 Porphobilinogen deaminase, C-terminal domain AM442_04405 PF02602 Uroporphyrinogen-III synthase HemD AM442_04420 PF13279 Thioesterase-like superfamily AM442_04425 PF00816 H-NS histone family AM442_04430 PF01203 AM442_04430 AM442_04435 PF11356 Type IV pilus biogenesis AM442_04440 PF00263 AM442_04440 AM442_04440 PF03958 Bacterial type II/III secretion system short domain AM442_04445 PF00498 FHA domain AM442_04450 PF13419 Haloacid dehalogenase-like hydrolase AM442_04455 PF00425 chorismate binding enzyme AM442_04455 PF04715 Anthranilate synthase component I, N terminal region AM442_04480 PF00009 Elongation factor Tu GTP binding domain AM442_04480 PF03143 Elongation factor Tu C-terminal domain AM442_04480 PF03144 Elongation factor Tu domain 2 AM442_04490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM442_04495 PF02357 Transcription termination factor nusG AM442_04500 PF00298 Ribosomal protein L11, RNA binding domain AM442_04500 PF03946 Ribosomal protein L11, N-terminal domain AM442_04505 PF00687 Ribosomal protein L1p/L10e family AM442_04510 PF00466 Ribosomal protein L10 AM442_04515 PF00542 Ribosomal protein L7/L12 C-terminal domain AM442_04515 PF16320 AM442_04515 AM442_04520 PF00562 RNA polymerase Rpb2, domain 6 AM442_04520 PF04560 RNA polymerase Rpb2, domain 7 AM442_04520 PF04561 RNA polymerase Rpb2, domain 2 AM442_04520 PF04563 RNA polymerase beta subunit AM442_04520 PF04565 RNA polymerase Rpb2, domain 3 AM442_04520 PF10385 RNA polymerase beta subunit external 1 domain AM442_04525 PF00623 RNA polymerase Rpb1, domain 2 AM442_04525 PF04983 RNA polymerase Rpb1, domain 3 AM442_04525 PF04997 RNA polymerase Rpb1, domain 1 AM442_04525 PF04998 RNA polymerase Rpb1, domain 5 AM442_04525 PF05000 RNA polymerase Rpb1, domain 4 AM442_04535 PF13441 AM442_04535 AM442_04540 PF14539 Domain of unknown function (DUF4442) AM442_04545 PF00561 alpha/beta hydrolase fold AM442_04550 PF03553 AM442_04550 AM442_04550 PF13726 AM442_04550 AM442_04555 PF03922 OmpW family AM442_04560 PF07007 Protein of unknown function (DUF1311) AM442_04565 PF00183 Hsp90 protein AM442_04565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_04580 PF01323 DSBA-like thioredoxin domain AM442_04590 PF13411 MerR HTH family regulatory protein AM442_04595 PF06821 Serine hydrolase AM442_04605 PF00108 Thiolase, N-terminal domain AM442_04605 PF02803 Thiolase, C-terminal domain AM442_04610 PF00378 Enoyl-CoA hydratase/isomerase family AM442_04610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_04610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_04615 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AM442_04640 PF01541 GIY-YIG catalytic domain AM442_04640 PF02151 UvrB/uvrC motif AM442_04640 PF08459 UvrC Helix-hairpin-helix N-terminal AM442_04640 PF14520 Helix-hairpin-helix domain AM442_04645 PF13622 Thioesterase-like superfamily AM442_04650 PF01066 CDP-alcohol phosphatidyltransferase AM442_04655 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM442_04655 PF12833 Helix-turn-helix domain AM442_04660 PF13532 2OG-Fe(II) oxygenase superfamily AM442_04665 PF01614 Bacterial transcriptional regulator AM442_04670 PF04632 AM442_04670 AM442_04675 PF07869 AM442_04675 AM442_04680 PF13437 HlyD family secretion protein AM442_04680 PF13533 Biotin-lipoyl like AM442_04685 PF03652 Uncharacterised protein family (UPF0081) AM442_04690 PF02622 Uncharacterized ACR, COG1678 AM442_04695 PF02463 RecF/RecN/SMC N terminal domain AM442_04705 PF06865 Protein of unknown function (DUF1255) AM442_04710 PF00588 SpoU rRNA Methylase family AM442_04710 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM442_04715 PF00892 EamA-like transporter family AM442_04720 PF01121 Dephospho-CoA kinase AM442_04725 PF01478 Type IV leader peptidase family AM442_04725 PF06750 AM442_04725 AM442_04730 PF00482 Type II secretion system (T2SS), protein F AM442_04735 PF00437 Type II/IV secretion system protein AM442_04735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM442_04740 PF00121 Triosephosphate isomerase AM442_04745 PF03840 Preprotein translocase SecG subunit AM442_04765 PF02576 Uncharacterised BCR, YhbC family COG0779 AM442_04765 PF17384 AM442_04765 AM442_04770 PF08529 NusA N-terminal domain AM442_04770 PF13184 NusA-like KH domain AM442_04770 PF14520 Helix-hairpin-helix domain AM442_04775 PF00009 Elongation factor Tu GTP binding domain AM442_04775 PF04760 Translation initiation factor IF-2, N-terminal region AM442_04775 PF08364 AM442_04775 AM442_04775 PF11987 Translation-initiation factor 2 AM442_04780 PF02033 Ribosome-binding factor A AM442_04785 PF03334 AM442_04785 AM442_04790 PF04066 AM442_04790 AM442_04795 PF01899 AM442_04795 AM442_04800 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM442_04805 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM442_04810 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM442_04810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM442_04810 PF04039 AM442_04810 AM442_04810 PF13244 AM442_04810 AM442_04815 PF13476 AAA domain AM442_04820 PF13245 Part of AAA domain AM442_04820 PF13361 UvrD-like helicase C-terminal domain AM442_04825 PF01502 Phosphoribosyl-AMP cyclohydrolase AM442_04825 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AM442_04830 PF01494 FAD binding domain AM442_04835 PF03109 AM442_04835 AM442_04845 PF01209 ubiE/COQ5 methyltransferase family AM442_04855 PF03976 Polyphosphate kinase 2 (PPK2) AM442_04865 PF04257 Exodeoxyribonuclease V, gamma subunit AM442_04870 PF00580 UvrD/REP helicase N-terminal domain AM442_04870 PF12705 PD-(D/E)XK nuclease superfamily AM442_04870 PF13361 UvrD-like helicase C-terminal domain AM442_04875 PF13538 UvrD-like helicase C-terminal domain AM442_04875 PF13604 AAA domain AM442_04880 PF00144 Beta-lactamase AM442_04885 PF00312 Ribosomal protein S15 AM442_04890 PF00013 KH domain AM442_04890 PF00575 S1 RNA binding domain AM442_04890 PF01138 3' exoribonuclease family, domain 1 AM442_04890 PF03725 3' exoribonuclease family, domain 2 AM442_04890 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM442_04895 PF01544 CorA-like Mg2+ transporter protein AM442_04900 PF13591 MerR HTH family regulatory protein AM442_04905 PF00226 DnaJ domain AM442_04905 PF01556 DnaJ C terminal domain AM442_04910 PF01810 AM442_04910 AM442_04915 PF01430 Hsp33 protein AM442_04920 PF00999 Sodium/hydrogen exchanger family AM442_04920 PF02254 TrkA-N domain AM442_04925 PF00271 Helicase conserved C-terminal domain AM442_04925 PF04851 Type III restriction enzyme, res subunit AM442_04930 PF00482 Type II secretion system (T2SS), protein F AM442_04935 PF07963 Prokaryotic N-terminal methylation motif AM442_04935 PF08334 Type II secretion system (T2SS), protein G AM442_04950 PF01588 Putative tRNA binding domain AM442_04955 PF00795 Carbon-nitrogen hydrolase AM442_04960 PF00571 CBS domain AM442_04960 PF03471 Transporter associated domain AM442_04965 PF01206 Sulfurtransferase TusA AM442_04970 PF01946 Thi4 family AM442_04970 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AM442_04975 PF06938 Protein of unknown function (DUF1285) AM442_04980 PF01177 Asp/Glu/Hydantoin racemase AM442_04985 PF13271 AM442_04985 AM442_04990 PF00762 Ferrochelatase AM442_04995 PF00753 Metallo-beta-lactamase superfamily AM442_05000 PF03884 Domain of unknown function (DUF329) AM442_05005 PF02390 Putative methyltransferase AM442_05010 PF03486 HI0933-like protein AM442_05015 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM442_05020 PF02537 AM442_05020 AM442_05030 PF08888 HopJ type III effector protein AM442_05035 PF01197 Ribosomal protein L31 AM442_05040 PF03109 AM442_05040 AM442_05045 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_05045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_05045 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_05050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_05055 PF01554 MatE AM442_05060 PF04657 AM442_05060 AM442_05065 PF04055 Radical SAM superfamily AM442_05065 PF06969 HemN C-terminal domain AM442_05070 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05075 PF03466 LysR substrate binding domain AM442_05090 PF00501 AMP-binding enzyme AM442_05090 PF13193 AMP-binding enzyme C-terminal domain AM442_05095 PF00575 S1 RNA binding domain AM442_05095 PF10150 Ribonuclease E/G family AM442_05105 PF00849 RNA pseudouridylate synthase AM442_05105 PF01479 S4 domain AM442_05110 PF13419 Haloacid dehalogenase-like hydrolase AM442_05115 PF08279 HTH domain AM442_05115 PF13280 AM442_05115 AM442_05120 PF02798 Glutathione S-transferase, N-terminal domain AM442_05120 PF14497 Glutathione S-transferase, C-terminal domain AM442_05125 PF07077 AM442_05125 AM442_05130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05130 PF03466 LysR substrate binding domain AM442_05135 PF12706 Beta-lactamase superfamily domain AM442_05140 PF00141 Peroxidase AM442_05145 PF00391 PEP-utilising enzyme, mobile domain AM442_05145 PF02896 PEP-utilising enzyme, TIM barrel domain AM442_05145 PF05524 PEP-utilising enzyme, N-terminal AM442_05145 PF13185 GAF domain AM442_05150 PF00293 NUDIX domain AM442_05155 PF12710 haloacid dehalogenase-like hydrolase AM442_05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05170 PF03466 LysR substrate binding domain AM442_05175 PF09834 AM442_05175 AM442_05180 PF00330 Aconitase family (aconitate hydratase) AM442_05185 PF00694 Aconitase C-terminal domain AM442_05195 PF00180 Isocitrate/isopropylmalate dehydrogenase AM442_05205 PF07007 Protein of unknown function (DUF1311) AM442_05210 PF01176 Translation initiation factor 1A / IF-1 AM442_05215 PF12625 AM442_05215 AM442_05215 PF12833 Helix-turn-helix domain AM442_05220 PF01416 tRNA pseudouridine synthase AM442_05225 PF00710 Asparaginase AM442_05240 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM442_05240 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM442_05245 PF03372 Endonuclease/Exonuclease/phosphatase family AM442_05250 PF00375 Sodium:dicarboxylate symporter family AM442_05255 PF00534 Glycosyl transferases group 1 AM442_05255 PF13439 Glycosyltransferase Family 4 AM442_05260 PF03279 AM442_05260 AM442_05265 PF01810 AM442_05265 AM442_05270 PF00005 ABC transporter AM442_05270 PF12848 ABC transporter AM442_05270 PF16326 AM442_05270 AM442_05275 PF04102 SlyX AM442_05280 PF08240 Alcohol dehydrogenase GroES-like domain AM442_05280 PF13602 Zinc-binding dehydrogenase AM442_05285 PF01638 HxlR-like helix-turn-helix AM442_05295 PF01131 DNA topoisomerase AM442_05295 PF01396 AM442_05295 AM442_05295 PF01751 Toprim domain AM442_05295 PF08272 Topoisomerase I zinc-ribbon-like AM442_05305 PF03729 AM442_05305 AM442_05310 PF00580 UvrD/REP helicase N-terminal domain AM442_05310 PF13361 UvrD-like helicase C-terminal domain AM442_05315 PF00076 RNA recognition motif AM442_05335 PF00999 Sodium/hydrogen exchanger family AM442_05335 PF02254 TrkA-N domain AM442_05340 PF00471 Ribosomal protein L33 AM442_05345 PF00830 Ribosomal L28 family AM442_05350 PF00171 Aldehyde dehydrogenase family AM442_05355 PF00440 Bacterial regulatory proteins, tetR family AM442_05355 PF13972 Bacterial transcriptional repressor AM442_05360 PF00551 Formyl transferase AM442_05360 PF01842 ACT domain AM442_05365 PF03544 Gram-negative bacterial TonB protein C-terminal AM442_05370 PF01618 AM442_05370 AM442_05375 PF02472 Biopolymer transport protein ExbD/TolR AM442_05380 PF01625 Peptide methionine sulfoxide reductase AM442_05385 PF13387 AM442_05385 AM442_05390 PF00186 Dihydrofolate reductase AM442_05395 PF00303 Thymidylate synthase AM442_05410 PF01790 AM442_05410 AM442_05415 PF05742 AM442_05415 AM442_05420 PF05787 Bacterial protein of unknown function (DUF839) AM442_05425 PF05787 Bacterial protein of unknown function (DUF839) AM442_05430 PF00902 Sec-independent protein translocase protein (TatC) AM442_05435 PF02416 mttA/Hcf106 family AM442_05440 PF02416 mttA/Hcf106 family AM442_05450 PF01725 Ham1 family AM442_05455 PF08238 Sel1 repeat AM442_05460 PF07021 Methionine biosynthesis protein MetW AM442_05465 PF00561 alpha/beta hydrolase fold AM442_05470 PF00682 HMGL-like AM442_05470 PF08502 LeuA allosteric (dimerisation) domain AM442_05475 PF13640 2OG-Fe(II) oxygenase superfamily AM442_05480 PF00593 TonB dependent receptor AM442_05480 PF07715 TonB-dependent Receptor Plug Domain AM442_05485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_05485 PF05697 Bacterial trigger factor protein (TF) AM442_05485 PF05698 Bacterial trigger factor protein (TF) C-terminus AM442_05490 PF00574 Clp protease AM442_05495 PF06689 ClpX C4-type zinc finger AM442_05495 PF07724 AAA domain (Cdc48 subfamily) AM442_05495 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_05500 PF11008 AM442_05500 AM442_05505 PF09832 Uncharacterized protein conserved in bacteria (DUF2059) AM442_05510 PF05681 AM442_05510 AM442_05510 PF05683 Fumarase C-terminus AM442_05515 PF01515 Phosphate acetyl/butaryl transferase AM442_05515 PF07085 DRTGG domain AM442_05515 PF13500 AAA domain AM442_05520 PF00871 Acetokinase family AM442_05540 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AM442_05545 PF17074 AM442_05545 AM442_05550 PF00440 Bacterial regulatory proteins, tetR family AM442_05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05575 PF03466 LysR substrate binding domain AM442_05580 PF02567 Phenazine biosynthesis-like protein AM442_05600 PF00920 Dehydratase family AM442_05605 PF01081 KDPG and KHG aldolase AM442_05610 PF02447 AM442_05610 AM442_05615 PF01202 Shikimate kinase AM442_05620 PF00171 Aldehyde dehydrogenase family AM442_05625 PF00171 Aldehyde dehydrogenase family AM442_05630 PF00561 alpha/beta hydrolase fold AM442_05635 PF04072 Leucine carboxyl methyltransferase AM442_05640 PF00933 Glycosyl hydrolase family 3 N terminal domain AM442_05645 PF00595 PDZ domain (Also known as DHR or GLGF) AM442_05645 PF03572 Peptidase family S41 AM442_05645 PF11818 AM442_05645 AM442_05650 PF00534 Glycosyl transferases group 1 AM442_05650 PF13439 Glycosyltransferase Family 4 AM442_05655 PF01569 PAP2 superfamily AM442_05660 PF04384 Iron-sulphur cluster assembly AM442_05665 PF00334 Nucleoside diphosphate kinase AM442_05670 PF04055 Radical SAM superfamily AM442_05675 PF13432 Tetratricopeptide repeat AM442_05680 PF13413 Helix-turn-helix domain AM442_05680 PF13464 AM442_05680 AM442_05685 PF04551 GcpE protein AM442_05690 PF03129 Anticodon binding domain AM442_05690 PF13393 Histidyl-tRNA synthetase AM442_05695 PF09976 Tetratricopeptide repeat AM442_05700 PF13360 PQQ-like domain AM442_05705 PF01926 50S ribosome-binding GTPase AM442_05705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM442_05710 PF01648 4'-phosphopantetheinyl transferase superfamily AM442_05715 PF02556 Preprotein translocase subunit SecB AM442_05720 PF00462 Glutaredoxin AM442_05725 PF00581 Rhodanese-like domain AM442_05730 PF03193 Protein of unknown function, DUF258 AM442_05735 PF00929 Exonuclease AM442_05740 PF12811 AM442_05740 AM442_05745 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_05750 PF02321 Outer membrane efflux protein AM442_05755 PF00005 ABC transporter AM442_05755 PF02687 AM442_05755 AM442_05755 PF12704 MacB-like periplasmic core domain AM442_05760 PF16576 AM442_05760 AM442_05765 PF06144 DNA polymerase III, delta subunit AM442_05775 PF00133 tRNA synthetases class I (I, L, M and V) AM442_05775 PF08264 Anticodon-binding domain of tRNA AM442_05775 PF09334 tRNA synthetases class I (M) AM442_05775 PF13603 Leucyl-tRNA synthetase, Domain 2 AM442_05785 PF13511 AM442_05785 AM442_05790 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_05790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_05790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_05795 PF10369 Small subunit of acetolactate synthase AM442_05795 PF13710 ACT domain AM442_05800 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM442_05800 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AM442_05805 PF00563 EAL domain AM442_05805 PF00990 GGDEF domain AM442_05815 PF00440 Bacterial regulatory proteins, tetR family AM442_05825 PF00440 Bacterial regulatory proteins, tetR family AM442_05835 PF00009 Elongation factor Tu GTP binding domain AM442_05835 PF16658 AM442_05835 AM442_05845 PF11738 Protein of unknown function (DUF3298) AM442_05850 PF01026 TatD related DNase AM442_05855 PF00330 Aconitase family (aconitate hydratase) AM442_05855 PF00694 Aconitase C-terminal domain AM442_05860 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AM442_05865 PF00899 ThiF family AM442_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_05875 PF03466 LysR substrate binding domain AM442_05885 PF01207 Dihydrouridine synthase (Dus) AM442_05890 PF07690 Major Facilitator Superfamily AM442_05895 PF01042 Endoribonuclease L-PSP AM442_05900 PF00892 EamA-like transporter family AM442_05905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM442_05905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM442_05910 PF12769 Domain of unknown function (DUF3814) AM442_05915 PF02233 NAD(P) transhydrogenase beta subunit AM442_05920 PF00106 short chain dehydrogenase AM442_05925 PF02410 Oligomerisation domain AM442_05930 PF01261 Xylose isomerase-like TIM barrel AM442_05935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM442_05935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM442_05940 PF00378 Enoyl-CoA hydratase/isomerase family AM442_05945 PF00072 Response regulator receiver domain AM442_05945 PF00512 His Kinase A (phospho-acceptor) domain AM442_05945 PF01627 Hpt domain AM442_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_05950 PF00291 Pyridoxal-phosphate dependent enzyme AM442_05955 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB AM442_05960 PF05958 tRNA (Uracil-5-)-methyltransferase AM442_05965 PF02824 TGS domain AM442_05965 PF04607 Region found in RelA / SpoT proteins AM442_05965 PF13291 ACT domain AM442_05965 PF13328 HD domain AM442_05970 PF00106 short chain dehydrogenase AM442_05975 PF03819 MazG nucleotide pyrophosphohydrolase domain AM442_05980 PF12836 Helix-hairpin-helix motif AM442_05985 PF01743 Poly A polymerase head domain AM442_05985 PF12626 Polymerase A arginine-rich C-terminus AM442_05985 PF12627 Probable RNA and SrmB- binding site of polymerase A AM442_05990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM442_05995 PF02548 Ketopantoate hydroxymethyltransferase AM442_06000 PF02569 Pantoate-beta-alanine ligase AM442_06005 PF03668 AM442_06005 AM442_06010 PF00381 PTS HPr component phosphorylation site AM442_06015 PF04751 Protein of unknown function (DUF615) AM442_06020 PF00501 AMP-binding enzyme AM442_06020 PF13193 AMP-binding enzyme C-terminal domain AM442_06025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM442_06025 PF02824 TGS domain AM442_06025 PF03129 Anticodon binding domain AM442_06025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM442_06030 PF00707 Translation initiation factor IF-3, C-terminal domain AM442_06030 PF05198 Translation initiation factor IF-3, N-terminal domain AM442_06040 PF00043 Glutathione S-transferase, C-terminal domain AM442_06040 PF02798 Glutathione S-transferase, N-terminal domain AM442_06045 PF09335 AM442_06045 AM442_06050 PF05977 Transmembrane secretion effector AM442_06055 PF01632 Ribosomal protein L35 AM442_06060 PF00453 Ribosomal protein L20 AM442_06075 PF01409 tRNA synthetases class II core domain (F) AM442_06075 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM442_06080 PF01588 Putative tRNA binding domain AM442_06080 PF03147 Ferredoxin-fold anticodon binding domain AM442_06080 PF03483 B3/4 domain AM442_06080 PF03484 tRNA synthetase B5 domain AM442_06085 PF00216 Bacterial DNA-binding protein AM442_06100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM442_06100 PF07497 Rho termination factor, RNA-binding domain AM442_06100 PF07498 Rho termination factor, N-terminal domain AM442_06105 PF00085 Thioredoxin AM442_06110 PF01966 HD domain AM442_06110 PF02541 Ppx/GppA phosphatase family AM442_06115 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM442_06120 PF01171 PP-loop family AM442_06120 PF09179 TilS substrate binding domain AM442_06120 PF11734 TilS substrate C-terminal domain AM442_06125 PF03807 NADP oxidoreductase coenzyme F420-dependent AM442_06125 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM442_06130 PF02325 AM442_06130 AM442_06135 PF00476 DNA polymerase family A AM442_06135 PF01367 5'-3' exonuclease, C-terminal SAM fold AM442_06135 PF01612 3'-5' exonuclease AM442_06135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM442_06140 PF10101 AM442_06140 AM442_06145 PF00924 Mechanosensitive ion channel AM442_06155 PF00437 Type II/IV secretion system protein AM442_06160 PF02566 OsmC-like protein AM442_06165 PF01047 MarR family AM442_06170 PF16309 AM442_06170 AM442_06175 PF00795 Carbon-nitrogen hydrolase AM442_06180 PF01740 STAS domain AM442_06185 PF07228 Stage II sporulation protein E (SpoIIE) AM442_06190 PF04333 AM442_06190 AM442_06220 PF00309 AM442_06220 AM442_06220 PF04552 Sigma-54, DNA binding domain AM442_06220 PF04963 Sigma-54 factor, core binding domain AM442_06225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM442_06230 PF01722 BolA-like protein AM442_06235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM442_06240 PF01634 ATP phosphoribosyltransferase AM442_06245 PF00815 Histidinol dehydrogenase AM442_06250 PF00155 Aminotransferase class I and II AM442_06255 PF00425 chorismate binding enzyme AM442_06255 PF04715 Anthranilate synthase component I, N terminal region AM442_06265 PF03412 Peptidase C39 family AM442_06275 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM442_06290 PF00293 NUDIX domain AM442_06290 PF14803 Nudix N-terminal AM442_06295 PF00293 NUDIX domain AM442_06300 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_06305 PF00814 Glycoprotease family AM442_06310 PF04445 Putative SAM-dependent methyltransferase AM442_06315 PF01650 Peptidase C13 family AM442_06320 PF00756 Putative esterase AM442_06325 PF09981 Uncharacterized protein conserved in bacteria (DUF2218) AM442_06330 PF00834 Ribulose-phosphate 3 epimerase family AM442_06335 PF08282 haloacid dehalogenase-like hydrolase AM442_06345 PF00394 Multicopper oxidase AM442_06345 PF07731 Multicopper oxidase AM442_06345 PF07732 Multicopper oxidase AM442_06350 PF05275 AM442_06350 AM442_06355 PF01545 Cation efflux family AM442_06360 PF00893 Small Multidrug Resistance protein AM442_06365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM442_06365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM442_06370 PF01960 ArgJ family AM442_06375 PF02445 Quinolinate synthetase A protein AM442_06400 PF00962 Adenosine/AMP deaminase AM442_06405 PF00107 Zinc-binding dehydrogenase AM442_06405 PF08240 Alcohol dehydrogenase GroES-like domain AM442_06410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06410 PF03466 LysR substrate binding domain AM442_06415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_06415 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_06415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_06420 PF07690 Major Facilitator Superfamily AM442_06425 PF02515 CoA-transferase family III AM442_06435 PF00890 FAD binding domain AM442_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06440 PF03466 LysR substrate binding domain AM442_06445 PF13531 Bacterial extracellular solute-binding protein AM442_06450 PF07690 Major Facilitator Superfamily AM442_06460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06460 PF03466 LysR substrate binding domain AM442_06465 PF14491 AM442_06465 AM442_06470 PF13175 AAA ATPase domain AM442_06480 PF08908 AM442_06480 AM442_06485 PF01717 Cobalamin-independent synthase, Catalytic domain AM442_06490 PF01613 Flavin reductase like domain AM442_06500 PF00440 Bacterial regulatory proteins, tetR family AM442_06505 PF04471 Restriction endonuclease AM442_06505 PF06114 Domain of unknown function (DUF955) AM442_06510 PF17074 AM442_06510 AM442_06535 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AM442_06540 PF17074 AM442_06540 AM442_06545 PF00440 Bacterial regulatory proteins, tetR family AM442_06585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06585 PF03466 LysR substrate binding domain AM442_06590 PF02567 Phenazine biosynthesis-like protein AM442_06605 PF00268 Ribonucleotide reductase, small chain AM442_06615 PF00317 Ribonucleotide reductase, all-alpha domain AM442_06615 PF02867 Ribonucleotide reductase, barrel domain AM442_06615 PF03477 ATP cone domain AM442_06625 PF00072 Response regulator receiver domain AM442_06625 PF00486 Transcriptional regulatory protein, C terminal AM442_06630 PF00512 His Kinase A (phospho-acceptor) domain AM442_06630 PF00672 HAMP domain AM442_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_06640 PF00990 GGDEF domain AM442_06645 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM442_06650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM442_06655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM442_06655 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM442_06660 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AM442_06665 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM442_06665 PF10531 SLBB domain AM442_06665 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM442_06670 PF00384 Molybdopterin oxidoreductase AM442_06670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM442_06670 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM442_06670 PF13510 2Fe-2S iron-sulfur cluster binding domain AM442_06675 PF00146 NADH dehydrogenase AM442_06680 PF12838 4Fe-4S dicluster domain AM442_06685 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM442_06690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM442_06695 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM442_06695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM442_06700 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM442_06705 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AM442_06710 PF14681 Uracil phosphoribosyltransferase AM442_06715 PF00313 'Cold-shock' DNA-binding domain AM442_06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_06720 PF03466 LysR substrate binding domain AM442_06725 PF00175 Oxidoreductase NAD-binding domain AM442_06725 PF00970 Oxidoreductase FAD-binding domain AM442_06740 PF05552 Conserved TM helix AM442_06750 PF03486 HI0933-like protein AM442_06755 PF00291 Pyridoxal-phosphate dependent enzyme AM442_06760 PF13437 HlyD family secretion protein AM442_06760 PF13533 Biotin-lipoyl like AM442_06765 PF07690 Major Facilitator Superfamily AM442_06770 PF00440 Bacterial regulatory proteins, tetR family AM442_06775 PF01810 AM442_06775 AM442_06785 PF01588 Putative tRNA binding domain AM442_06785 PF08264 Anticodon-binding domain of tRNA AM442_06785 PF09334 tRNA synthetases class I (M) AM442_06795 PF10609 ParA/MinD ATPase like AM442_06805 PF01048 Phosphorylase superfamily AM442_06810 PF09835 AM442_06810 AM442_06815 PF01810 AM442_06815 AM442_06820 PF00692 dUTPase AM442_06865 PF01207 Dihydrouridine synthase (Dus) AM442_06870 PF01578 AM442_06870 AM442_06875 PF00448 SRP54-type protein, GTPase domain AM442_06875 PF02881 SRP54-type protein, helical bundle domain AM442_06875 PF02978 Signal peptide binding domain AM442_06880 PF03309 Type III pantothenate kinase AM442_06885 PF03099 Biotin/lipoate A/B protein ligase family AM442_06890 PF01925 AM442_06890 AM442_06895 PF00392 Bacterial regulatory proteins, gntR family AM442_06895 PF07729 FCD domain AM442_06900 PF02463 RecF/RecN/SMC N terminal domain AM442_06905 PF04354 ZipA, C-terminal FtsZ-binding domain AM442_06910 PF00533 BRCA1 C Terminus (BRCT) domain AM442_06910 PF01653 NAD-dependent DNA ligase adenylation domain AM442_06910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM442_06910 PF03120 NAD-dependent DNA ligase OB-fold domain AM442_06910 PF12826 Helix-hairpin-helix motif AM442_06910 PF14520 Helix-hairpin-helix domain AM442_06915 PF00210 Ferritin-like domain AM442_06920 PF07690 Major Facilitator Superfamily AM442_06925 PF00982 Glycosyltransferase family 20 AM442_06930 PF02358 Trehalose-phosphatase AM442_06935 PF12697 Alpha/beta hydrolase family AM442_06940 PF00202 Aminotransferase class-III AM442_06945 PF00155 Aminotransferase class I and II AM442_06950 PF13489 Methyltransferase domain AM442_06955 PF13500 AAA domain AM442_06960 PF00849 RNA pseudouridylate synthase AM442_06960 PF01479 S4 domain AM442_06965 PF04079 Putative transcriptional regulators (Ypuh-like) AM442_06970 PF02616 ScpA/B protein AM442_06975 PF01300 Telomere recombination AM442_06980 PF04315 AM442_06980 AM442_06985 PF02620 AM442_06985 AM442_06990 PF01783 Ribosomal L32p protein family AM442_06995 PF00698 Acyl transferase domain AM442_07000 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_07005 PF00550 Phosphopantetheine attachment site AM442_07010 PF01476 LysM domain AM442_07010 PF04972 BON domain AM442_07015 PF08543 Phosphomethylpyrimidine kinase AM442_07020 PF13419 Haloacid dehalogenase-like hydrolase AM442_07025 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM442_07030 PF09925 AM442_07030 AM442_07030 PF14351 AM442_07030 AM442_07035 PF14345 AM442_07035 AM442_07040 PF02261 Aspartate decarboxylase AM442_07045 PF01195 Peptidyl-tRNA hydrolase AM442_07050 PF01386 Ribosomal L25p family AM442_07055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM442_07055 PF14572 Phosphoribosyl synthetase-associated domain AM442_07075 PF00288 GHMP kinases N terminal domain AM442_07075 PF08544 GHMP kinases C terminal AM442_07080 PF03550 Outer membrane lipoprotein LolB AM442_07085 PF13181 Tetratricopeptide repeat AM442_07085 PF13432 Tetratricopeptide repeat AM442_07085 PF14559 Tetratricopeptide repeat AM442_07090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM442_07090 PF01488 Shikimate / quinate 5-dehydrogenase AM442_07090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM442_07095 PF01807 CHC2 zinc finger AM442_07095 PF08275 DNA primase catalytic core, N-terminal domain AM442_07095 PF10410 DnaB-helicase binding domain of primase AM442_07095 PF13662 Toprim domain AM442_07100 PF13525 Outer membrane lipoprotein AM442_07105 PF00849 RNA pseudouridylate synthase AM442_07105 PF01479 S4 domain AM442_07110 PF02578 Multi-copper polyphenol oxidoreductase laccase AM442_07115 PF03358 NADPH-dependent FMN reductase AM442_07120 PF01668 SmpB protein AM442_07125 PF05930 Prophage CP4-57 regulatory protein (AlpA) AM442_07155 PF13479 AM442_07155 AM442_07175 PF00717 Peptidase S24-like AM442_07195 PF00772 DnaB-like helicase N terminal domain AM442_07195 PF03796 DnaB-like helicase C terminal domain AM442_07210 PF12961 Domain of Unknown Function with PDB structure (DUF3850) AM442_07230 PF08774 VRR-NUC domain AM442_07260 PF06356 AM442_07260 AM442_07275 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM442_07295 PF10045 AM442_07295 AM442_07300 PF17289 AM442_07300 AM442_07305 PF13264 AM442_07305 AM442_07310 PF04233 AM442_07310 AM442_07340 PF10281 AM442_07340 AM442_07385 PF07927 YcfA-like protein AM442_07390 PF15919 AM442_07390 AM442_07395 PF14730 Domain of unknown function (DUF4468) with TBP-like fold AM442_07400 PF01464 Transglycosylase SLT domain AM442_07400 PF06120 AM442_07400 AM442_07405 PF05939 AM442_07405 AM442_07425 PF00877 NlpC/P60 family AM442_07425 PF14464 Prokaryotic homologs of the JAB domain AM442_07435 PF13550 AM442_07435 AM442_07450 PF00959 Phage lysozyme AM442_07460 PF00589 Phage integrase family AM442_07460 PF13356 Domain of unknown function (DUF4102) AM442_07465 PF01467 Cytidylyltransferase AM442_07470 PF00037 4Fe-4S binding domain AM442_07485 PF07396 Phosphate-selective porin O and P AM442_07490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_07490 PF03466 LysR substrate binding domain AM442_07495 PF00180 Isocitrate/isopropylmalate dehydrogenase AM442_07500 PF02028 BCCT family transporter AM442_07505 PF07859 alpha/beta hydrolase fold AM442_07510 PF00355 Rieske [2Fe-2S] domain AM442_07510 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_07515 PF00171 Aldehyde dehydrogenase family AM442_07520 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_07520 PF00175 Oxidoreductase NAD-binding domain AM442_07520 PF00970 Oxidoreductase FAD-binding domain AM442_07535 PF00795 Carbon-nitrogen hydrolase AM442_07535 PF02540 NAD synthase AM442_07545 PF02678 Pirin AM442_07545 PF05726 Pirin C-terminal cupin domain AM442_07550 PF03653 AM442_07550 AM442_07555 PF00109 Beta-ketoacyl synthase, N-terminal domain AM442_07555 PF02801 Beta-ketoacyl synthase, C-terminal domain AM442_07560 PF12787 AM442_07560 AM442_07565 PF00164 Ribosomal protein S12/S23 AM442_07570 PF00177 Ribosomal protein S7p/S5e AM442_07575 PF00009 Elongation factor Tu GTP binding domain AM442_07575 PF00679 Elongation factor G C-terminus AM442_07575 PF03144 Elongation factor Tu domain 2 AM442_07575 PF03764 Elongation factor G, domain IV AM442_07575 PF14492 Elongation Factor G, domain II AM442_07580 PF00009 Elongation factor Tu GTP binding domain AM442_07580 PF03143 Elongation factor Tu C-terminal domain AM442_07580 PF03144 Elongation factor Tu domain 2 AM442_07585 PF10118 AM442_07585 AM442_07590 PF10118 AM442_07590 AM442_07595 PF00583 Acetyltransferase (GNAT) family AM442_07600 PF04376 AM442_07600 AM442_07600 PF04377 AM442_07600 AM442_07605 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM442_07610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_07615 PF01580 FtsK/SpoIIIE family AM442_07615 PF09397 Ftsk gamma domain AM442_07615 PF13491 AM442_07615 AM442_07620 PF01810 AM442_07620 AM442_07630 PF03776 Septum formation topological specificity factor MinE AM442_07635 PF13614 AAA domain AM442_07640 PF03775 Septum formation inhibitor MinC, C-terminal domain AM442_07650 PF01553 Acyltransferase AM442_07655 PF00691 OmpA family AM442_07660 PF00580 UvrD/REP helicase N-terminal domain AM442_07660 PF13361 UvrD-like helicase C-terminal domain AM442_07665 PF00692 dUTPase AM442_07670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM442_07670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM442_07670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM442_07675 PF00696 Amino acid kinase family AM442_07680 PF13444 Acetyltransferase (GNAT) domain AM442_07685 PF13230 Glutamine amidotransferases class-II AM442_07690 PF01814 Hemerythrin HHE cation binding domain AM442_07705 PF03658 RnfH family Ubiquitin AM442_07710 PF04355 SmpA / OmlA family AM442_07715 PF01475 Ferric uptake regulator family AM442_07720 PF00437 Type II/IV secretion system protein AM442_07725 PF00437 Type II/IV secretion system protein AM442_07730 PF01168 Alanine racemase, N-terminal domain AM442_07735 PF13476 AAA domain AM442_07735 PF13558 Putative exonuclease SbcCD, C subunit AM442_07740 PF00149 Calcineurin-like phosphoesterase AM442_07740 PF12320 Type 5 capsule protein repressor C-terminal domain AM442_07745 PF02566 OsmC-like protein AM442_07760 PF01370 NAD dependent epimerase/dehydratase family AM442_07760 PF08338 Domain of unknown function (DUF1731) AM442_07765 PF01266 FAD dependent oxidoreductase AM442_07770 PF00490 Delta-aminolevulinic acid dehydratase AM442_07775 PF03061 Thioesterase superfamily AM442_07780 PF00529 HlyD family secretion protein AM442_07780 PF16576 AM442_07780 AM442_07785 PF07690 Major Facilitator Superfamily AM442_07790 PF01019 Gamma-glutamyltranspeptidase AM442_07800 PF01867 CRISPR associated protein Cas1 AM442_07805 PF09618 CRISPR-associated protein (Cas_Csy4) AM442_07810 PF09615 AM442_07810 AM442_07815 PF09614 AM442_07815 AM442_07840 PF03573 outer membrane porin, OprD family AM442_07845 PF00083 Sugar (and other) transporter AM442_07850 PF00701 Dihydrodipicolinate synthetase family AM442_07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_07855 PF03466 LysR substrate binding domain AM442_07860 PF04542 Sigma-70 region 2 AM442_07860 PF08281 Sigma-70, region 4 AM442_07865 PF04773 FecR protein AM442_07865 PF16220 AM442_07865 AM442_07865 PF16344 AM442_07865 AM442_07870 PF00593 TonB dependent receptor AM442_07870 PF07660 Secretin and TonB N terminus short domain AM442_07870 PF07715 TonB-dependent Receptor Plug Domain AM442_07875 PF01298 Transferrin binding protein-like solute binding protein AM442_07880 PF04575 AM442_07880 AM442_07885 PF03544 Gram-negative bacterial TonB protein C-terminal AM442_07890 PF01126 Heme oxygenase AM442_07895 PF04304 AM442_07895 AM442_07905 PF06912 AM442_07905 AM442_07910 PF12697 Alpha/beta hydrolase family AM442_07915 PF13520 Amino acid permease AM442_07920 PF02574 Homocysteine S-methyltransferase AM442_07935 PF06039 AM442_07935 AM442_07940 PF00732 GMC oxidoreductase AM442_07940 PF05199 GMC oxidoreductase AM442_07945 PF00171 Aldehyde dehydrogenase family AM442_07950 PF00440 Bacterial regulatory proteins, tetR family AM442_07950 PF13977 Bacterial transcriptional repressor AM442_07955 PF02028 BCCT family transporter AM442_07960 PF02028 BCCT family transporter AM442_07965 PF01914 AM442_07965 AM442_07970 PF03061 Thioesterase superfamily AM442_07980 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM442_07985 PF00375 Sodium:dicarboxylate symporter family AM442_07990 PF07152 YaeQ protein AM442_07995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_08000 PF01522 Polysaccharide deacetylase AM442_08000 PF14883 Hypothetical glycosyl hydrolase family 13 AM442_08005 PF13641 Glycosyltransferase like family 2 AM442_08010 PF13994 AM442_08010 AM442_08015 PF00378 Enoyl-CoA hydratase/isomerase family AM442_08020 PF04973 AM442_08020 AM442_08030 PF01614 Bacterial transcriptional regulator AM442_08030 PF09339 IclR helix-turn-helix domain AM442_08035 PF00355 Rieske [2Fe-2S] domain AM442_08045 PF00355 Rieske [2Fe-2S] domain AM442_08050 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_08055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_08060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08060 PF14759 Reductase C-terminal AM442_08065 PF07690 Major Facilitator Superfamily AM442_08070 PF07883 Cupin domain AM442_08075 PF12697 Alpha/beta hydrolase family AM442_08080 PF00106 short chain dehydrogenase AM442_08085 PF01958 Domain of unknown function DUF108 AM442_08085 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_08090 PF00171 Aldehyde dehydrogenase family AM442_08095 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_08095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_08095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_08105 PF07690 Major Facilitator Superfamily AM442_08110 PF01327 Polypeptide deformylase AM442_08115 PF04960 Glutaminase AM442_08120 PF12833 Helix-turn-helix domain AM442_08125 PF07690 Major Facilitator Superfamily AM442_08130 PF01263 Aldose 1-epimerase AM442_08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08145 PF03466 LysR substrate binding domain AM442_08150 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_08155 PF07690 Major Facilitator Superfamily AM442_08160 PF00456 Transketolase, thiamine diphosphate binding domain AM442_08165 PF02779 Transketolase, pyrimidine binding domain AM442_08165 PF02780 Transketolase, C-terminal domain AM442_08170 PF00809 Pterin binding enzyme AM442_08170 PF02310 B12 binding domain AM442_08170 PF02574 Homocysteine S-methyltransferase AM442_08170 PF02607 B12 binding domain AM442_08170 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM442_08175 PF01384 AM442_08175 AM442_08180 PF00291 Pyridoxal-phosphate dependent enzyme AM442_08195 PF03781 Sulfatase-modifying factor enzyme 1 AM442_08200 PF00884 Sulfatase AM442_08205 PF01694 Rhomboid family AM442_08210 PF01106 NifU-like domain AM442_08210 PF01521 Iron-sulphur cluster biosynthesis AM442_08215 PF00593 TonB dependent receptor AM442_08215 PF07715 TonB-dependent Receptor Plug Domain AM442_08225 PF12697 Alpha/beta hydrolase family AM442_08230 PF00484 Carbonic anhydrase AM442_08235 PF13472 GDSL-like Lipase/Acylhydrolase family AM442_08240 PF00005 ABC transporter AM442_08245 PF02687 AM442_08245 AM442_08250 PF01694 Rhomboid family AM442_08255 PF00912 Transglycosylase AM442_08260 PF02503 Polyphosphate kinase middle domain AM442_08260 PF13089 Polyphosphate kinase N-terminal domain AM442_08260 PF13090 Polyphosphate kinase C-terminal domain AM442_08270 PF05036 Sporulation related domain AM442_08275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08275 PF03466 LysR substrate binding domain AM442_08280 PF00561 alpha/beta hydrolase fold AM442_08285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08290 PF00301 Rubredoxin AM442_08295 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AM442_08300 PF05728 Uncharacterised protein family (UPF0227) AM442_08305 PF00152 tRNA synthetases class II (D, K and N) AM442_08305 PF01336 OB-fold nucleic acid binding domain AM442_08310 PF14052 Capsule assembly protein Wzi AM442_08320 PF01507 Phosphoadenosine phosphosulfate reductase family AM442_08325 PF00009 Elongation factor Tu GTP binding domain AM442_08330 PF09998 AM442_08330 AM442_08340 PF03600 Citrate transporter AM442_08350 PF00571 CBS domain AM442_08350 PF01595 AM442_08350 AM442_08350 PF03471 Transporter associated domain AM442_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08355 PF03466 LysR substrate binding domain AM442_08360 PF00463 Isocitrate lyase family AM442_08365 PF04170 NlpE N-terminal domain AM442_08375 PF01774 UreD urease accessory protein AM442_08380 PF00547 Urease, gamma subunit AM442_08390 PF00699 Urease beta subunit AM442_08395 PF13673 Acetyltransferase (GNAT) domain AM442_08400 PF00449 Urease alpha-subunit, N-terminal domain AM442_08400 PF01979 Amidohydrolase family AM442_08405 PF02814 UreE urease accessory protein, N-terminal domain AM442_08405 PF05194 UreE urease accessory protein, C-terminal domain AM442_08410 PF01730 UreF AM442_08415 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM442_08420 PF04955 AM442_08420 AM442_08425 PF03602 Conserved hypothetical protein 95 AM442_08430 PF00905 Penicillin binding protein transpeptidase domain AM442_08430 PF03717 Penicillin-binding Protein dimerisation domain AM442_08445 PF00406 Adenylate kinase AM442_08445 PF05191 Adenylate kinase, active site lid AM442_08455 PF00633 Helix-hairpin-helix motif AM442_08455 PF00730 HhH-GPD superfamily base excision DNA repair protein AM442_08455 PF10576 Iron-sulfur binding domain of endonuclease III AM442_08460 PF04060 Putative Fe-S cluster AM442_08460 PF14697 4Fe-4S dicluster domain AM442_08465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM442_08465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM442_08470 PF03724 META domain AM442_08470 PF14302 AM442_08470 AM442_08480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM442_08485 PF02590 Predicted SPOUT methyltransferase AM442_08490 PF00004 ATPase family associated with various cellular activities (AAA) AM442_08490 PF02190 ATP-dependent protease La (LON) domain AM442_08490 PF05362 Lon protease (S16) C-terminal proteolytic domain AM442_08500 PF03895 YadA-like C-terminal region AM442_08500 PF05658 Head domain of trimeric autotransporter adhesin AM442_08500 PF05662 Coiled stalk of trimeric autotransporter adhesin AM442_08500 PF13018 AM442_08500 AM442_08505 PF00691 OmpA family AM442_08505 PF04355 SmpA / OmlA family AM442_08510 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM442_08535 PF05164 Cell division protein ZapA AM442_08545 PF03695 Uncharacterised protein family (UPF0149) AM442_08550 PF00557 Metallopeptidase family M24 AM442_08550 PF05195 Aminopeptidase P, N-terminal domain AM442_08555 PF01494 FAD binding domain AM442_08560 PF01494 FAD binding domain AM442_08570 PF13411 MerR HTH family regulatory protein AM442_08575 PF01545 Cation efflux family AM442_08580 PF01810 AM442_08580 AM442_08585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_08585 PF03466 LysR substrate binding domain AM442_08595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM442_08600 PF02021 Uncharacterised protein family UPF0102 AM442_08605 PF04972 BON domain AM442_08610 PF07859 alpha/beta hydrolase fold AM442_08615 PF00293 NUDIX domain AM442_08615 PF09297 NADH pyrophosphatase zinc ribbon domain AM442_08625 PF00075 RNase H AM442_08625 PF00929 Exonuclease AM442_08630 PF01464 Transglycosylase SLT domain AM442_08630 PF01476 LysM domain AM442_08635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM442_08640 PF00528 Binding-protein-dependent transport system inner membrane component AM442_08645 PF00528 Binding-protein-dependent transport system inner membrane component AM442_08645 PF12911 AM442_08645 AM442_08650 PF00005 ABC transporter AM442_08655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_08660 PF00593 TonB dependent receptor AM442_08660 PF07715 TonB-dependent Receptor Plug Domain AM442_08670 PF00929 Exonuclease AM442_08675 PF01979 Amidohydrolase family AM442_08680 PF00990 GGDEF domain AM442_08685 PF00764 Arginosuccinate synthase AM442_08690 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_08690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_08700 PF03180 NLPA lipoprotein AM442_08720 PF01337 Barstar (barnase inhibitor) AM442_08730 PF08857 Putative ParB-like nuclease AM442_08740 PF00440 Bacterial regulatory proteins, tetR family AM442_08745 PF05954 Phage late control gene D protein (GPD) AM442_08745 PF10106 AM442_08745 AM442_08745 PF13296 AM442_08745 AM442_08750 PF03527 AM442_08750 AM442_08750 PF05593 AM442_08750 AM442_08780 PF13086 AAA domain AM442_08780 PF13087 AAA domain AM442_08790 PF00324 Amino acid permease AM442_08795 PF01266 FAD dependent oxidoreductase AM442_08800 PF00324 Amino acid permease AM442_08805 PF02743 Cache domain AM442_08810 PF00392 Bacterial regulatory proteins, gntR family AM442_08810 PF07729 FCD domain AM442_08815 PF12680 SnoaL-like domain AM442_08820 PF00171 Aldehyde dehydrogenase family AM442_08825 PF01037 AsnC family AM442_08825 PF13404 AsnC-type helix-turn-helix domain AM442_08830 PF00202 Aminotransferase class-III AM442_08835 PF04958 Arginine N-succinyltransferase beta subunit AM442_08840 PF00324 Amino acid permease AM442_08845 PF00171 Aldehyde dehydrogenase family AM442_08850 PF12625 AM442_08850 AM442_08850 PF12833 Helix-turn-helix domain AM442_08860 PF00892 EamA-like transporter family AM442_08865 PF04295 AM442_08865 AM442_08865 PF08666 SAF domain AM442_08870 PF07690 Major Facilitator Superfamily AM442_08875 PF13378 Enolase C-terminal domain-like AM442_08880 PF00701 Dihydrodipicolinate synthetase family AM442_08885 PF00171 Aldehyde dehydrogenase family AM442_08890 PF00392 Bacterial regulatory proteins, gntR family AM442_08890 PF07729 FCD domain AM442_08900 PF13610 AM442_08900 AM442_08910 PF03061 Thioesterase superfamily AM442_08915 PF11578 Protein of unknown function (DUF3237) AM442_08920 PF03573 outer membrane porin, OprD family AM442_08925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_08925 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_08925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_08930 PF00501 AMP-binding enzyme AM442_08935 PF00171 Aldehyde dehydrogenase family AM442_08940 PF00378 Enoyl-CoA hydratase/isomerase family AM442_08945 PF07690 Major Facilitator Superfamily AM442_08950 PF01047 MarR family AM442_08955 PF00392 Bacterial regulatory proteins, gntR family AM442_08955 PF07729 FCD domain AM442_08960 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_08965 PF00355 Rieske [2Fe-2S] domain AM442_08970 PF03573 outer membrane porin, OprD family AM442_08975 PF03781 Sulfatase-modifying factor enzyme 1 AM442_08980 PF00884 Sulfatase AM442_08985 PF07690 Major Facilitator Superfamily AM442_08990 PF03573 outer membrane porin, OprD family AM442_08995 PF00732 GMC oxidoreductase AM442_08995 PF05199 GMC oxidoreductase AM442_09000 PF07859 alpha/beta hydrolase fold AM442_09005 PF00106 short chain dehydrogenase AM442_09010 PF00743 Flavin-binding monooxygenase-like AM442_09015 PF12625 AM442_09015 AM442_09015 PF12833 Helix-turn-helix domain AM442_09020 PF04072 Leucine carboxyl methyltransferase AM442_09025 PF13738 Pyridine nucleotide-disulphide oxidoreductase AM442_09030 PF00106 short chain dehydrogenase AM442_09035 PF10118 AM442_09035 AM442_09045 PF00440 Bacterial regulatory proteins, tetR family AM442_09050 PF02678 Pirin AM442_09055 PF10118 AM442_09055 AM442_09060 PF00106 short chain dehydrogenase AM442_09065 PF13738 Pyridine nucleotide-disulphide oxidoreductase AM442_09075 PF00860 Permease family AM442_09080 PF00962 Adenosine/AMP deaminase AM442_09085 PF01292 Prokaryotic cytochrome b561 AM442_09095 PF01351 Ribonuclease HII AM442_09100 PF02599 Global regulator protein family AM442_09105 PF00696 Amino acid kinase family AM442_09105 PF01842 ACT domain AM442_09105 PF13840 ACT domain AM442_09110 PF01411 tRNA synthetases class II (A) AM442_09110 PF02272 DHHA1 domain AM442_09110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM442_09115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM442_09115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM442_09120 PF13393 Histidyl-tRNA synthetase AM442_09125 PF00709 Adenylosuccinate synthetase AM442_09135 PF01435 Peptidase family M48 AM442_09140 PF00248 Aldo/keto reductase family AM442_09145 PF00027 Cyclic nucleotide-binding domain AM442_09145 PF00325 Bacterial regulatory proteins, crp family AM442_09150 PF02566 OsmC-like protein AM442_09155 PF00583 Acetyltransferase (GNAT) family AM442_09160 PF01551 Peptidase family M23 AM442_09165 PF00004 ATPase family associated with various cellular activities (AAA) AM442_09165 PF02861 Clp amino terminal domain AM442_09165 PF07724 AAA domain (Cdc48 subfamily) AM442_09165 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_09170 PF02464 Competence-damaged protein AM442_09180 PF01170 Putative RNA methylase family UPF0020 AM442_09180 PF02926 THUMP domain AM442_09180 PF10672 S-adenosylmethionine-dependent methyltransferase AM442_09190 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM442_09190 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM442_09200 PF00691 OmpA family AM442_09205 PF03807 NADP oxidoreductase coenzyme F420-dependent AM442_09205 PF10728 Domain of unknown function (DUF2520) AM442_09210 PF00043 Glutathione S-transferase, C-terminal domain AM442_09210 PF02798 Glutathione S-transferase, N-terminal domain AM442_09215 PF02390 Putative methyltransferase AM442_09220 PF00932 Lamin Tail Domain AM442_09225 PF00043 Glutathione S-transferase, C-terminal domain AM442_09225 PF02798 Glutathione S-transferase, N-terminal domain AM442_09235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_09235 PF13192 Thioredoxin domain AM442_09240 PF07866 Protein of unknown function (DUF1653) AM442_09245 PF01596 O-methyltransferase AM442_09250 PF13619 AM442_09250 AM442_09255 PF00578 AhpC/TSA family AM442_09255 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM442_09260 PF00270 DEAD/DEAH box helicase AM442_09260 PF00271 Helicase conserved C-terminal domain AM442_09260 PF04408 Helicase associated domain (HA2) AM442_09260 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AM442_09260 PF11898 AM442_09260 AM442_09265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM442_09265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM442_09270 PF03573 outer membrane porin, OprD family AM442_09275 PF07690 Major Facilitator Superfamily AM442_09280 PF03594 AM442_09280 AM442_09285 PF00106 short chain dehydrogenase AM442_09290 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_09290 PF00175 Oxidoreductase NAD-binding domain AM442_09290 PF00970 Oxidoreductase FAD-binding domain AM442_09295 PF00866 Ring hydroxylating beta subunit AM442_09300 PF00355 Rieske [2Fe-2S] domain AM442_09300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_09305 PF03466 LysR substrate binding domain AM442_09310 PF13557 AM442_09310 AM442_09315 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_09315 PF00175 Oxidoreductase NAD-binding domain AM442_09315 PF00970 Oxidoreductase FAD-binding domain AM442_09320 PF04663 Phenol hydroxylase conserved region AM442_09325 PF02332 Methane/Phenol/Toluene Hydroxylase AM442_09325 PF04945 YHS domain AM442_09330 PF02406 MmoB/DmpM family AM442_09335 PF02332 Methane/Phenol/Toluene Hydroxylase AM442_09340 PF06099 AM442_09340 AM442_09345 PF00158 Sigma-54 interaction domain AM442_09345 PF02830 V4R domain AM442_09345 PF02954 Bacterial regulatory protein, Fis family AM442_09345 PF06505 AM442_09345 AM442_09350 PF00403 Heavy-metal-associated domain AM442_09355 PF00122 E1-E2 ATPase AM442_09355 PF00403 Heavy-metal-associated domain AM442_09355 PF00702 haloacid dehalogenase-like hydrolase AM442_09360 PF00376 MerR family regulatory protein AM442_09360 PF09278 MerR, DNA binding AM442_09365 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM442_09370 PF03860 Domain of Unknown Function (DUF326) AM442_09385 PF01810 AM442_09385 AM442_09395 PF02609 Exonuclease VII small subunit AM442_09400 PF02601 AM442_09400 AM442_09400 PF13742 AM442_09400 AM442_09415 PF00717 Peptidase S24-like AM442_09415 PF12844 Helix-turn-helix domain AM442_09430 PF05838 Glycosyl hydrolase 108 AM442_09430 PF09374 Predicted Peptidoglycan domain AM442_09435 PF01810 AM442_09435 AM442_09440 PF00313 'Cold-shock' DNA-binding domain AM442_09450 PF03807 NADP oxidoreductase coenzyme F420-dependent AM442_09450 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM442_09475 PF04233 AM442_09475 AM442_09480 PF07690 Major Facilitator Superfamily AM442_09485 PF01638 HxlR-like helix-turn-helix AM442_09495 PF09374 Predicted Peptidoglycan domain AM442_09525 PF01406 tRNA synthetases class I (C) catalytic domain AM442_09525 PF09190 DALR domain AM442_09530 PF00571 CBS domain AM442_09530 PF01380 SIS domain AM442_09535 PF08282 haloacid dehalogenase-like hydrolase AM442_09540 PF06835 Lipopolysaccharide-assembly, LptC-related AM442_09545 PF03968 OstA-like protein AM442_09550 PF00005 ABC transporter AM442_09550 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM442_09555 PF02321 Outer membrane efflux protein AM442_09560 PF00005 ABC transporter AM442_09560 PF00664 ABC transporter transmembrane region AM442_09565 PF13437 HlyD family secretion protein AM442_09565 PF13533 Biotin-lipoyl like AM442_09570 PF01205 Uncharacterized protein family UPF0029 AM442_09570 PF09186 Domain of unknown function (DUF1949) AM442_09575 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_09575 PF14602 Hexapeptide repeat of succinyl-transferase AM442_09580 PF00582 Universal stress protein family AM442_09585 PF01596 O-methyltransferase AM442_09590 PF08291 Peptidase M15 AM442_09595 PF00037 4Fe-4S binding domain AM442_09595 PF11953 Domain of unknown function (DUF3470) AM442_09600 PF13673 Acetyltransferase (GNAT) domain AM442_09605 PF00488 MutS domain V AM442_09605 PF01624 MutS domain I AM442_09605 PF05188 MutS domain II AM442_09605 PF05190 MutS family domain IV AM442_09605 PF05192 MutS domain III AM442_09610 PF01037 AsnC family AM442_09610 PF13404 AsnC-type helix-turn-helix domain AM442_09615 PF00892 EamA-like transporter family AM442_09620 PF00563 EAL domain AM442_09625 PF03279 AM442_09625 AM442_09635 PF00440 Bacterial regulatory proteins, tetR family AM442_09640 PF07690 Major Facilitator Superfamily AM442_09645 PF09917 Uncharacterized protein conserved in bacteria (DUF2147) AM442_09660 PF01965 DJ-1/PfpI family AM442_09660 PF12833 Helix-turn-helix domain AM442_09670 PF02525 Flavodoxin-like fold AM442_09680 PF05229 AM442_09680 AM442_09685 PF07739 TipAS antibiotic-recognition domain AM442_09685 PF13411 MerR HTH family regulatory protein AM442_09690 PF08856 AM442_09690 AM442_09695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_09695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_09715 PF13354 Beta-lactamase enzyme family AM442_09725 PF05954 Phage late control gene D protein (GPD) AM442_09725 PF10106 AM442_09725 AM442_09725 PF13296 AM442_09725 AM442_09730 PF03527 AM442_09730 AM442_09730 PF05593 AM442_09730 AM442_09730 PF14431 AM442_09730 AM442_09750 PF13737 AM442_09750 AM442_09765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_09765 PF03466 LysR substrate binding domain AM442_09770 PF01566 AM442_09770 AM442_09775 PF03746 LamB/YcsF family AM442_09780 PF07286 Protein of unknown function (DUF1445) AM442_09785 PF02626 Allophanate hydrolase subunit 2 AM442_09785 PF02682 Allophanate hydrolase subunit 1 AM442_09790 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AM442_09790 PF00364 Biotin-requiring enzyme AM442_09790 PF02785 Biotin carboxylase C-terminal domain AM442_09790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_09795 PF00654 Voltage gated chloride channel AM442_09800 PF08238 Sel1 repeat AM442_09810 PF00440 Bacterial regulatory proteins, tetR family AM442_09815 PF10604 Polyketide cyclase / dehydrase and lipid transport AM442_09820 PF08240 Alcohol dehydrogenase GroES-like domain AM442_09820 PF13823 Alcohol dehydrogenase GroES-associated AM442_09825 PF09347 Domain of unknown function (DUF1989) AM442_09830 PF09347 Domain of unknown function (DUF1989) AM442_09835 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AM442_09835 PF00364 Biotin-requiring enzyme AM442_09835 PF02626 Allophanate hydrolase subunit 2 AM442_09835 PF02682 Allophanate hydrolase subunit 1 AM442_09835 PF02785 Biotin carboxylase C-terminal domain AM442_09835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_09840 PF02525 Flavodoxin-like fold AM442_09845 PF01638 HxlR-like helix-turn-helix AM442_09855 PF08753 NikR C terminal nickel binding domain AM442_09860 PF01425 Amidase AM442_09865 PF09084 NMT1/THI5 like AM442_09870 PF00005 ABC transporter AM442_09875 PF00528 Binding-protein-dependent transport system inner membrane component AM442_09900 PF05943 AM442_09900 AM442_09905 PF05638 Protein of unknown function (DUF796) AM442_09910 PF04965 Gene 25-like lysozyme AM442_09915 PF05947 AM442_09915 AM442_09920 PF06996 AM442_09920 AM442_09930 PF06744 AM442_09930 AM442_09930 PF06761 AM442_09930 AM442_09930 PF14331 AM442_09930 AM442_09935 PF09867 Uncharacterized protein conserved in bacteria (DUF2094) AM442_09940 PF00691 OmpA family AM442_09945 PF05488 PAAR motif AM442_09950 PF00004 ATPase family associated with various cellular activities (AAA) AM442_09950 PF07724 AAA domain (Cdc48 subfamily) AM442_09950 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_09955 PF06812 AM442_09955 AM442_09960 PF05936 AM442_09960 AM442_09965 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AM442_09975 PF13539 D-alanyl-D-alanine carboxypeptidase AM442_09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_09980 PF03466 LysR substrate binding domain AM442_09985 PF12796 Ankyrin repeats (3 copies) AM442_09990 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM442_09995 PF07690 Major Facilitator Superfamily AM442_10000 PF06224 AM442_10000 AM442_10005 PF00583 Acetyltransferase (GNAT) family AM442_10010 PF02677 AM442_10010 AM442_10025 PF00376 MerR family regulatory protein AM442_10025 PF09278 MerR, DNA binding AM442_10030 PF03891 AM442_10030 AM442_10030 PF11720 Peptidase inhibitor I78 family AM442_10040 PF00701 Dihydrodipicolinate synthetase family AM442_10045 PF00892 EamA-like transporter family AM442_10050 PF00392 Bacterial regulatory proteins, gntR family AM442_10050 PF07729 FCD domain AM442_10055 PF05544 Proline racemase AM442_10060 PF01266 FAD dependent oxidoreductase AM442_10065 PF13510 2Fe-2S iron-sulfur cluster binding domain AM442_10070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_10075 PF08448 PAS fold AM442_10075 PF12833 Helix-turn-helix domain AM442_10080 PF00083 Sugar (and other) transporter AM442_10085 PF00171 Aldehyde dehydrogenase family AM442_10090 PF13520 Amino acid permease AM442_10095 PF03313 AM442_10095 AM442_10095 PF03315 Serine dehydratase beta chain AM442_10100 PF00171 Aldehyde dehydrogenase family AM442_10100 PF01575 MaoC like domain AM442_10105 PF05138 Phenylacetic acid catabolic protein AM442_10110 PF06243 Phenylacetic acid degradation B AM442_10115 PF05138 Phenylacetic acid catabolic protein AM442_10120 PF01883 Domain of unknown function DUF59 AM442_10125 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_10125 PF00175 Oxidoreductase NAD-binding domain AM442_10125 PF00970 Oxidoreductase FAD-binding domain AM442_10130 PF00378 Enoyl-CoA hydratase/isomerase family AM442_10135 PF00378 Enoyl-CoA hydratase/isomerase family AM442_10140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_10140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_10145 PF00108 Thiolase, N-terminal domain AM442_10145 PF02803 Thiolase, C-terminal domain AM442_10150 PF00501 AMP-binding enzyme AM442_10150 PF14535 AMP-binding enzyme C-terminal domain AM442_10155 PF07848 PaaX-like protein AM442_10155 PF08223 PaaX-like protein C-terminal domain AM442_10160 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_10165 PF03061 Thioesterase superfamily AM442_10170 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AM442_10185 PF00440 Bacterial regulatory proteins, tetR family AM442_10195 PF00199 Catalase AM442_10200 PF01292 Prokaryotic cytochrome b561 AM442_10205 PF07045 Protein of unknown function (DUF1330) AM442_10210 PF00392 Bacterial regulatory proteins, gntR family AM442_10210 PF07729 FCD domain AM442_10215 PF06684 Amino acid synthesis AM442_10220 PF12697 Alpha/beta hydrolase family AM442_10225 PF01613 Flavin reductase like domain AM442_10230 PF00296 Luciferase-like monooxygenase AM442_10235 PF00171 Aldehyde dehydrogenase family AM442_10245 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM442_10255 PF00171 Aldehyde dehydrogenase family AM442_10260 PF02627 Carboxymuconolactone decarboxylase family AM442_10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10265 PF03466 LysR substrate binding domain AM442_10270 PF02525 Flavodoxin-like fold AM442_10275 PF01614 Bacterial transcriptional regulator AM442_10275 PF09339 IclR helix-turn-helix domain AM442_10280 PF01494 FAD binding domain AM442_10285 PF00392 Bacterial regulatory proteins, gntR family AM442_10285 PF07702 UTRA domain AM442_10290 PF13343 Bacterial extracellular solute-binding protein AM442_10295 PF00005 ABC transporter AM442_10300 PF00528 Binding-protein-dependent transport system inner membrane component AM442_10305 PF01266 FAD dependent oxidoreductase AM442_10310 PF00266 Aminotransferase class-V AM442_10315 PF13419 Haloacid dehalogenase-like hydrolase AM442_10320 PF07690 Major Facilitator Superfamily AM442_10325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10325 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10345 PF01614 Bacterial transcriptional regulator AM442_10345 PF09339 IclR helix-turn-helix domain AM442_10350 PF00378 Enoyl-CoA hydratase/isomerase family AM442_10355 PF03060 Nitronate monooxygenase AM442_10365 PF02543 Carbamoyltransferase AM442_10365 PF16861 AM442_10365 AM442_10370 PF01810 AM442_10370 AM442_10375 PF14518 Iron-containing redox enzyme AM442_10380 PF01614 Bacterial transcriptional regulator AM442_10380 PF09339 IclR helix-turn-helix domain AM442_10385 PF00108 Thiolase, N-terminal domain AM442_10385 PF02803 Thiolase, C-terminal domain AM442_10390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_10390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_10395 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_10400 PF00378 Enoyl-CoA hydratase/isomerase family AM442_10405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10405 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10410 PF07690 Major Facilitator Superfamily AM442_10415 PF01144 Coenzyme A transferase AM442_10420 PF01144 Coenzyme A transferase AM442_10430 PF07690 Major Facilitator Superfamily AM442_10435 PF03061 Thioesterase superfamily AM442_10440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10440 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10440 PF12418 AM442_10440 AM442_10440 PF12806 AM442_10440 AM442_10445 PF13622 Thioesterase-like superfamily AM442_10450 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AM442_10455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10455 PF03466 LysR substrate binding domain AM442_10460 PF00682 HMGL-like AM442_10465 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AM442_10465 PF00364 Biotin-requiring enzyme AM442_10465 PF02785 Biotin carboxylase C-terminal domain AM442_10465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_10470 PF00378 Enoyl-CoA hydratase/isomerase family AM442_10475 PF01039 Carboxyl transferase domain AM442_10480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_10480 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_10480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10485 PF00440 Bacterial regulatory proteins, tetR family AM442_10490 PF00501 AMP-binding enzyme AM442_10490 PF13193 AMP-binding enzyme C-terminal domain AM442_10495 PF13649 Methyltransferase domain AM442_10505 PF13472 GDSL-like Lipase/Acylhydrolase family AM442_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10510 PF03466 LysR substrate binding domain AM442_10545 PF02464 Competence-damaged protein AM442_10550 PF14518 Iron-containing redox enzyme AM442_10555 PF00199 Catalase AM442_10555 PF06628 Catalase-related immune-responsive AM442_10560 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_10570 PF10685 AM442_10570 AM442_10580 PF00717 Peptidase S24-like AM442_10585 PF01810 AM442_10585 AM442_10590 PF01037 AsnC family AM442_10590 PF13412 Winged helix-turn-helix DNA-binding AM442_10600 PF00072 Response regulator receiver domain AM442_10600 PF00512 His Kinase A (phospho-acceptor) domain AM442_10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_10605 PF00072 Response regulator receiver domain AM442_10605 PF00196 Bacterial regulatory proteins, luxR family AM442_10610 PF14542 GCN5-related N-acetyl-transferase AM442_10620 PF00528 Binding-protein-dependent transport system inner membrane component AM442_10625 PF00528 Binding-protein-dependent transport system inner membrane component AM442_10630 PF00005 ABC transporter AM442_10635 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_10640 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10650 PF03466 LysR substrate binding domain AM442_10655 PF01810 AM442_10655 AM442_10665 PF00266 Aminotransferase class-V AM442_10675 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_10675 PF06426 Serine acetyltransferase, N-terminal AM442_10680 PF00581 Rhodanese-like domain AM442_10685 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10690 PF03466 LysR substrate binding domain AM442_10695 PF00043 Glutathione S-transferase, C-terminal domain AM442_10695 PF02798 Glutathione S-transferase, N-terminal domain AM442_10700 PF13417 Glutathione S-transferase, N-terminal domain AM442_10700 PF14834 Glutathione S-transferase, C-terminal domain AM442_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10705 PF03466 LysR substrate binding domain AM442_10710 PF03788 AM442_10710 AM442_10715 PF04172 AM442_10715 AM442_10720 PF00155 Aminotransferase class I and II AM442_10720 PF00392 Bacterial regulatory proteins, gntR family AM442_10725 PF04299 Putative FMN-binding domain AM442_10730 PF13302 Acetyltransferase (GNAT) domain AM442_10735 PF07690 Major Facilitator Superfamily AM442_10740 PF12973 ChrR Cupin-like domain AM442_10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10745 PF03466 LysR substrate binding domain AM442_10750 PF16957 AM442_10750 AM442_10755 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM442_10760 PF06857 AM442_10760 AM442_10765 PF01039 Carboxyl transferase domain AM442_10770 PF06833 Malonate decarboxylase gamma subunit (MdcE) AM442_10775 PF10620 AM442_10775 AM442_10780 PF00698 Acyl transferase domain AM442_10785 PF03817 AM442_10785 AM442_10790 PF03818 AM442_10790 AM442_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10795 PF03466 LysR substrate binding domain AM442_10800 PF00155 Aminotransferase class I and II AM442_10800 PF00392 Bacterial regulatory proteins, gntR family AM442_10810 PF02322 AM442_10810 AM442_10815 PF01654 AM442_10815 AM442_10830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_10830 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_10835 PF00296 Luciferase-like monooxygenase AM442_10840 PF00083 Sugar (and other) transporter AM442_10850 PF13610 AM442_10850 AM442_10855 PF13523 Acetyltransferase (GNAT) domain AM442_10865 PF04986 AM442_10865 AM442_10865 PF14319 AM442_10865 AM442_10870 PF13610 AM442_10870 AM442_10880 PF00392 Bacterial regulatory proteins, gntR family AM442_10880 PF07729 FCD domain AM442_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10885 PF03466 LysR substrate binding domain AM442_10890 PF00857 Isochorismatase family AM442_10895 PF07969 Amidohydrolase family AM442_10900 PF07235 AM442_10900 AM442_10905 PF03960 ArsC family AM442_10910 PF01022 Bacterial regulatory protein, arsR family AM442_10915 PF01758 Sodium Bile acid symporter family AM442_10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_10920 PF03466 LysR substrate binding domain AM442_10925 PF02417 AM442_10925 AM442_10930 PF02417 AM442_10930 AM442_10935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_10935 PF13192 Thioredoxin domain AM442_10950 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_10950 PF06426 Serine acetyltransferase, N-terminal AM442_10955 PF00588 SpoU rRNA Methylase family AM442_10960 PF02811 PHP domain AM442_10960 PF07733 Bacterial DNA polymerase III alpha subunit AM442_10960 PF14579 Helix-hairpin-helix motif AM442_10965 PF00710 Asparaginase AM442_10980 PF00375 Sodium:dicarboxylate symporter family AM442_10985 PF00155 Aminotransferase class I and II AM442_10990 PF01641 SelR domain AM442_10995 PF00255 Glutathione peroxidase AM442_11000 PF02311 AraC-like ligand binding domain AM442_11000 PF12833 Helix-turn-helix domain AM442_11005 PF01810 AM442_11005 AM442_11010 PF00155 Aminotransferase class I and II AM442_11015 PF01909 Nucleotidyltransferase domain AM442_11015 PF01966 HD domain AM442_11015 PF08335 GlnD PII-uridylyltransferase AM442_11020 PF02222 ATP-grasp domain AM442_11025 PF14552 Tautomerase enzyme AM442_11030 PF05437 AM442_11030 AM442_11035 PF03591 AM442_11035 AM442_11050 PF00027 Cyclic nucleotide-binding domain AM442_11050 PF13545 Crp-like helix-turn-helix domain AM442_11055 PF06127 AM442_11055 AM442_11060 PF01926 50S ribosome-binding GTPase AM442_11060 PF06071 Protein of unknown function (DUF933) AM442_11065 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11070 PF00005 ABC transporter AM442_11070 PF09383 NIL domain AM442_11075 PF03180 NLPA lipoprotein AM442_11080 PF03180 NLPA lipoprotein AM442_11085 PF00296 Luciferase-like monooxygenase AM442_11090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_11090 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_11095 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_11095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_11095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_11100 PF13417 Glutathione S-transferase, N-terminal domain AM442_11100 PF14497 Glutathione S-transferase, C-terminal domain AM442_11105 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_11110 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11115 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11120 PF00005 ABC transporter AM442_11130 PF01037 AsnC family AM442_11130 PF13412 Winged helix-turn-helix DNA-binding AM442_11135 PF01709 Transcriptional regulator AM442_11140 PF01553 Acyltransferase AM442_11145 PF00440 Bacterial regulatory proteins, tetR family AM442_11170 PF00589 Phage integrase family AM442_11180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_11180 PF03466 LysR substrate binding domain AM442_11185 PF05232 AM442_11185 AM442_11190 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM442_11200 PF00892 EamA-like transporter family AM442_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_11205 PF03466 LysR substrate binding domain AM442_11220 PF00419 Fimbrial protein AM442_11225 PF00577 Outer membrane usher protein AM442_11225 PF13953 PapC C-terminal domain AM442_11225 PF13954 PapC N-terminal domain AM442_11230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM442_11230 PF02753 Pili assembly chaperone PapD, C-terminal domain AM442_11235 PF16970 AM442_11235 AM442_11250 PF04055 Radical SAM superfamily AM442_11250 PF06968 Biotin and Thiamin Synthesis associated domain AM442_11255 PF08331 AM442_11255 AM442_11255 PF13484 AM442_11255 AM442_11260 PF01256 Carbohydrate kinase AM442_11260 PF03853 YjeF-related protein N-terminus AM442_11265 PF02075 Crossover junction endodeoxyribonuclease RuvC AM442_11270 PF01381 Helix-turn-helix AM442_11275 PF13420 Acetyltransferase (GNAT) domain AM442_11280 PF00905 Penicillin binding protein transpeptidase domain AM442_11285 PF04186 AM442_11285 AM442_11300 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM442_11300 PF02772 S-adenosylmethionine synthetase, central domain AM442_11300 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM442_11305 PF00456 Transketolase, thiamine diphosphate binding domain AM442_11305 PF02779 Transketolase, pyrimidine binding domain AM442_11305 PF02780 Transketolase, C-terminal domain AM442_11310 PF02566 OsmC-like protein AM442_11315 PF04264 YceI-like domain AM442_11320 PF04970 Lecithin retinol acyltransferase AM442_11325 PF09992 Predicted periplasmic protein (DUF2233) AM442_11335 PF05958 tRNA (Uracil-5-)-methyltransferase AM442_11340 PF04229 GrpB protein AM442_11345 PF00171 Aldehyde dehydrogenase family AM442_11345 PF01619 Proline dehydrogenase AM442_11345 PF14850 DNA-binding domain of Proline dehydrogenase AM442_11350 PF01037 AsnC family AM442_11350 PF13404 AsnC-type helix-turn-helix domain AM442_11355 PF00474 Sodium:solute symporter family AM442_11360 PF02146 Sir2 family AM442_11365 PF01597 Glycine cleavage H-protein AM442_11370 PF12625 AM442_11370 AM442_11370 PF12833 Helix-turn-helix domain AM442_11375 PF01575 MaoC like domain AM442_11380 PF00005 ABC transporter AM442_11380 PF00664 ABC transporter transmembrane region AM442_11385 PF09831 AM442_11385 AM442_11390 PF06912 AM442_11390 AM442_11395 PF00375 Sodium:dicarboxylate symporter family AM442_11400 PF01022 Bacterial regulatory protein, arsR family AM442_11405 PF00440 Bacterial regulatory proteins, tetR family AM442_11410 PF08007 Cupin superfamily protein AM442_11415 PF02545 Maf-like protein AM442_11420 PF09996 Uncharacterized protein conserved in bacteria (DUF2237) AM442_11425 PF00162 Phosphoglycerate kinase AM442_11435 PF01116 Fructose-bisphosphate aldolase class-II AM442_11440 PF00639 PPIC-type PPIASE domain AM442_11440 PF09312 SurA N-terminal domain AM442_11440 PF13616 PPIC-type PPIASE domain AM442_11445 PF03968 OstA-like protein AM442_11445 PF04453 Organic solvent tolerance protein AM442_11450 PF01636 Phosphotransferase enzyme family AM442_11455 PF00483 Nucleotidyl transferase AM442_11460 PF02527 rRNA small subunit methyltransferase G AM442_11465 PF13614 AAA domain AM442_11470 PF02195 ParB-like nuclease domain AM442_11475 PF01618 AM442_11475 AM442_11480 PF02472 Biopolymer transport protein ExbD/TolR AM442_11485 PF00005 ABC transporter AM442_11485 PF00664 ABC transporter transmembrane region AM442_11490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AM442_11495 PF02348 Cytidylyltransferase AM442_11500 PF13177 DNA polymerase III, delta subunit AM442_11505 PF07238 PilZ domain AM442_11510 PF01026 TatD related DNase AM442_11515 PF00440 Bacterial regulatory proteins, tetR family AM442_11520 PF07963 Prokaryotic N-terminal methylation motif AM442_11525 PF02501 Type II secretion system (T2SS), protein I AM442_11525 PF07963 Prokaryotic N-terminal methylation motif AM442_11530 PF07963 Prokaryotic N-terminal methylation motif AM442_11530 PF11612 Type II secretion system (T2SS), protein J AM442_11535 PF03934 Type II secretion system (T2SS), protein K AM442_11540 PF01242 6-pyruvoyl tetrahydropterin synthase AM442_11545 PF03167 Uracil DNA glycosylase superfamily AM442_11550 PF16113 AM442_11550 AM442_11555 PF14437 AM442_11555 AM442_11560 PF10604 Polyketide cyclase / dehydrase and lipid transport AM442_11565 PF02224 Cytidylate kinase AM442_11570 PF00575 S1 RNA binding domain AM442_11575 PF00216 Bacterial DNA-binding protein AM442_11580 PF06305 AM442_11580 AM442_11585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM442_11590 PF03956 AM442_11590 AM442_11595 PF00743 Flavin-binding monooxygenase-like AM442_11600 PF12625 AM442_11600 AM442_11600 PF12833 Helix-turn-helix domain AM442_11605 PF03969 AFG1-like ATPase AM442_11610 PF01274 Malate synthase AM442_11615 PF00583 Acetyltransferase (GNAT) family AM442_11620 PF02472 Biopolymer transport protein ExbD/TolR AM442_11625 PF02472 Biopolymer transport protein ExbD/TolR AM442_11630 PF01618 AM442_11630 AM442_11635 PF03544 Gram-negative bacterial TonB protein C-terminal AM442_11640 PF00593 TonB dependent receptor AM442_11640 PF07715 TonB-dependent Receptor Plug Domain AM442_11650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM442_11655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM442_11660 PF01432 Peptidase family M3 AM442_11665 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11670 PF00528 Binding-protein-dependent transport system inner membrane component AM442_11670 PF12911 AM442_11670 AM442_11675 PF00005 ABC transporter AM442_11675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM442_11680 PF02586 Uncharacterised ACR, COG2135 AM442_11690 PF00459 Inositol monophosphatase family AM442_11695 PF00300 Histidine phosphatase superfamily (branch 1) AM442_11700 PF01649 Ribosomal protein S20 AM442_11705 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM442_11710 PF03737 Demethylmenaquinone methyltransferase AM442_11715 PF13417 Glutathione S-transferase, N-terminal domain AM442_11720 PF04261 Dyp-type peroxidase family AM442_11730 PF00270 DEAD/DEAH box helicase AM442_11730 PF00271 Helicase conserved C-terminal domain AM442_11730 PF02559 CarD-like/TRCF domain AM442_11730 PF03461 TRCF domain AM442_11735 PF01230 HIT domain AM442_11740 PF00211 Adenylate and Guanylate cyclase catalytic domain AM442_11745 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_11750 PF00012 Hsp70 protein AM442_11755 PF00226 DnaJ domain AM442_11755 PF07743 HSCB C-terminal oligomerisation domain AM442_11760 PF01521 Iron-sulphur cluster biosynthesis AM442_11765 PF01592 NifU-like N terminal domain AM442_11770 PF00266 Aminotransferase class-V AM442_11775 PF02082 Transcriptional regulator AM442_11785 PF05597 AM442_11785 AM442_11790 PF00216 Bacterial DNA-binding protein AM442_11795 PF13616 PPIC-type PPIASE domain AM442_11795 PF13624 SurA N-terminal domain AM442_11800 PF12833 Helix-turn-helix domain AM442_11800 PF12852 Cupin AM442_11805 PF00487 AM442_11805 AM442_11810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_11810 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_11815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_11815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_11820 PF03109 AM442_11820 AM442_11830 PF04073 Aminoacyl-tRNA editing domain AM442_11835 PF04183 IucA / IucC family AM442_11835 PF06276 Ferric iron reductase FhuF-like transporter AM442_11840 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM442_11845 PF07690 Major Facilitator Superfamily AM442_11850 PF04183 IucA / IucC family AM442_11850 PF06276 Ferric iron reductase FhuF-like transporter AM442_11855 PF04183 IucA / IucC family AM442_11855 PF06276 Ferric iron reductase FhuF-like transporter AM442_11860 PF11575 AM442_11860 AM442_11865 PF03737 Demethylmenaquinone methyltransferase AM442_11870 PF00593 TonB dependent receptor AM442_11870 PF07715 TonB-dependent Receptor Plug Domain AM442_11880 PF03929 AM442_11880 AM442_11890 PF13523 Acetyltransferase (GNAT) domain AM442_11895 PF08125 Mannitol dehydrogenase C-terminal domain AM442_11895 PF13419 Haloacid dehalogenase-like hydrolase AM442_11900 PF13563 2'-5' RNA ligase superfamily AM442_11905 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AM442_11910 PF02277 Phosphoribosyltransferase AM442_11915 PF00300 Histidine phosphatase superfamily (branch 1) AM442_11920 PF00328 Histidine phosphatase superfamily (branch 2) AM442_11925 PF02654 AM442_11925 AM442_11930 PF00793 DAHP synthetase I family AM442_11935 PF01925 AM442_11935 AM442_11955 PF00593 TonB dependent receptor AM442_11955 PF07715 TonB-dependent Receptor Plug Domain AM442_11960 PF02684 AM442_11960 AM442_11965 PF00440 Bacterial regulatory proteins, tetR family AM442_11965 PF09209 Domain of unknown function (DUF1956) AM442_11970 PF13437 HlyD family secretion protein AM442_11970 PF13533 Biotin-lipoyl like AM442_11975 PF00005 ABC transporter AM442_11980 PF12698 ABC-2 family transporter protein AM442_11985 PF12698 ABC-2 family transporter protein AM442_11990 PF10977 AM442_11990 AM442_12000 PF06078 Bacterial protein of unknown function (DUF937) AM442_12005 PF13609 Gram-negative porin AM442_12010 PF01230 HIT domain AM442_12015 PF13308 YARHG domain AM442_12025 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM442_12035 PF13437 HlyD family secretion protein AM442_12035 PF13533 Biotin-lipoyl like AM442_12040 PF07690 Major Facilitator Superfamily AM442_12060 PF02321 Outer membrane efflux protein AM442_12070 PF01975 Survival protein SurE AM442_12080 PF13328 HD domain AM442_12090 PF00440 Bacterial regulatory proteins, tetR family AM442_12095 PF13643 AM442_12095 AM442_12110 PF03374 AM442_12110 AM442_12120 PF05488 PAAR motif AM442_12130 PF00326 Prolyl oligopeptidase family AM442_12135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12135 PF03466 LysR substrate binding domain AM442_12140 PF00106 short chain dehydrogenase AM442_12145 PF12146 Putative lysophospholipase AM442_12150 PF12625 AM442_12150 AM442_12150 PF12833 Helix-turn-helix domain AM442_12160 PF00512 His Kinase A (phospho-acceptor) domain AM442_12160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_12165 PF00072 Response regulator receiver domain AM442_12165 PF00486 Transcriptional regulatory protein, C terminal AM442_12170 PF16576 AM442_12170 AM442_12175 PF00873 AcrB/AcrD/AcrF family AM442_12185 PF12146 Putative lysophospholipase AM442_12190 PF13738 Pyridine nucleotide-disulphide oxidoreductase AM442_12195 PF01593 Flavin containing amine oxidoreductase AM442_12200 PF03435 Saccharopine dehydrogenase AM442_12205 PF00440 Bacterial regulatory proteins, tetR family AM442_12210 PF01266 FAD dependent oxidoreductase AM442_12220 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM442_12225 PF00171 Aldehyde dehydrogenase family AM442_12230 PF05544 Proline racemase AM442_12235 PF00732 GMC oxidoreductase AM442_12235 PF05199 GMC oxidoreductase AM442_12240 PF07883 Cupin domain AM442_12245 PF00561 alpha/beta hydrolase fold AM442_12250 PF01958 Domain of unknown function DUF108 AM442_12250 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_12255 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_12260 PF02264 LamB porin AM442_12265 PF07978 NIPSNAP AM442_12270 PF07883 Cupin domain AM442_12275 PF07690 Major Facilitator Superfamily AM442_12280 PF00732 GMC oxidoreductase AM442_12280 PF05199 GMC oxidoreductase AM442_12285 PF00892 EamA-like transporter family AM442_12290 PF01738 Dienelactone hydrolase family AM442_12295 PF00356 Bacterial regulatory proteins, lacI family AM442_12295 PF13377 Periplasmic binding protein-like domain AM442_12300 PF04172 AM442_12300 AM442_12310 PF00815 Histidinol dehydrogenase AM442_12315 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_12315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_12315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_12320 PF01266 FAD dependent oxidoreductase AM442_12320 PF05199 GMC oxidoreductase AM442_12325 PF07690 Major Facilitator Superfamily AM442_12330 PF00459 Inositol monophosphatase family AM442_12335 PF02597 ThiS family AM442_12340 PF05690 Thiazole biosynthesis protein ThiG AM442_12345 PF02264 LamB porin AM442_12355 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_12355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_12355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_12360 PF06283 Trehalose utilisation AM442_12365 PF00356 Bacterial regulatory proteins, lacI family AM442_12365 PF13377 Periplasmic binding protein-like domain AM442_12370 PF01261 Xylose isomerase-like TIM barrel AM442_12375 PF00732 GMC oxidoreductase AM442_12375 PF05199 GMC oxidoreductase AM442_12380 PF00933 Glycosyl hydrolase family 3 N terminal domain AM442_12390 PF00293 NUDIX domain AM442_12395 PF00248 Aldo/keto reductase family AM442_12410 PF13091 PLD-like domain AM442_12430 PF01244 Membrane dipeptidase (Peptidase family M19) AM442_12435 PF04055 Radical SAM superfamily AM442_12435 PF13186 Iron-sulfur cluster-binding domain AM442_12435 PF13353 4Fe-4S single cluster domain AM442_12440 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AM442_12445 PF03070 TENA/THI-4/PQQC family AM442_12450 PF12706 Beta-lactamase superfamily domain AM442_12455 PF08042 AM442_12455 AM442_12460 PF02503 Polyphosphate kinase middle domain AM442_12460 PF13089 Polyphosphate kinase N-terminal domain AM442_12460 PF13090 Polyphosphate kinase C-terminal domain AM442_12465 PF01610 AM442_12465 AM442_12465 PF14690 AM442_12465 AM442_12470 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AM442_12470 PF04851 Type III restriction enzyme, res subunit AM442_12475 PF01420 Type I restriction modification DNA specificity domain AM442_12485 PF02384 N-6 DNA Methylase AM442_12485 PF12161 HsdM N-terminal domain AM442_12490 PF00149 Calcineurin-like phosphoesterase AM442_12490 PF02872 5'-nucleotidase, C-terminal domain AM442_12495 PF01475 Ferric uptake regulator family AM442_12500 PF00857 Isochorismatase family AM442_12505 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_12510 PF00005 ABC transporter AM442_12515 PF00528 Binding-protein-dependent transport system inner membrane component AM442_12520 PF13531 Bacterial extracellular solute-binding protein AM442_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12530 PF00355 Rieske [2Fe-2S] domain AM442_12530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_12535 PF00866 Ring hydroxylating beta subunit AM442_12540 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_12540 PF00175 Oxidoreductase NAD-binding domain AM442_12540 PF00970 Oxidoreductase FAD-binding domain AM442_12545 PF12833 Helix-turn-helix domain AM442_12545 PF14525 AM442_12545 AM442_12550 PF13557 AM442_12550 AM442_12555 PF01613 Flavin reductase like domain AM442_12565 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_12570 PF01738 Dienelactone hydrolase family AM442_12575 PF07690 Major Facilitator Superfamily AM442_12580 PF12833 Helix-turn-helix domain AM442_12580 PF14525 AM442_12580 AM442_12585 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_12590 PF02447 AM442_12590 AM442_12600 PF00440 Bacterial regulatory proteins, tetR family AM442_12605 PF07681 AM442_12605 AM442_12610 PF11738 Protein of unknown function (DUF3298) AM442_12620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12620 PF03466 LysR substrate binding domain AM442_12625 PF01144 Coenzyme A transferase AM442_12630 PF01144 Coenzyme A transferase AM442_12635 PF02667 AM442_12635 AM442_12640 PF00108 Thiolase, N-terminal domain AM442_12640 PF02803 Thiolase, C-terminal domain AM442_12645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12645 PF03466 LysR substrate binding domain AM442_12650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_12650 PF03466 LysR substrate binding domain AM442_12665 PF00206 Lyase AM442_12665 PF10415 Fumarase C C-terminus AM442_12670 PF00593 TonB dependent receptor AM442_12670 PF07715 TonB-dependent Receptor Plug Domain AM442_12675 PF00083 Sugar (and other) transporter AM442_12675 PF07690 Major Facilitator Superfamily AM442_12680 PF06155 Protein of unknown function (DUF971) AM442_12685 PF13646 HEAT repeats AM442_12690 PF00005 ABC transporter AM442_12695 PF00528 Binding-protein-dependent transport system inner membrane component AM442_12700 PF13379 NMT1-like family AM442_12705 PF12838 4Fe-4S dicluster domain AM442_12710 PF00890 FAD binding domain AM442_12710 PF02910 Fumarate reductase flavoprotein C-term AM442_12715 PF00392 Bacterial regulatory proteins, gntR family AM442_12715 PF07702 UTRA domain AM442_12720 PF02417 AM442_12720 AM442_12725 PF02525 Flavodoxin-like fold AM442_12730 PF01638 HxlR-like helix-turn-helix AM442_12735 PF12833 Helix-turn-helix domain AM442_12740 PF00892 EamA-like transporter family AM442_12745 PF00742 Homoserine dehydrogenase AM442_12745 PF03447 Homoserine dehydrogenase, NAD binding domain AM442_12750 PF01925 AM442_12750 AM442_12755 PF04273 Putative phosphatase (DUF442) AM442_12755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_12760 PF00753 Metallo-beta-lactamase superfamily AM442_12765 PF00158 Sigma-54 interaction domain AM442_12765 PF02954 Bacterial regulatory protein, Fis family AM442_12770 PF01062 AM442_12770 AM442_12775 PF00107 Zinc-binding dehydrogenase AM442_12775 PF08240 Alcohol dehydrogenase GroES-like domain AM442_12780 PF00106 short chain dehydrogenase AM442_12785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_12785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_12790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM442_12790 PF00364 Biotin-requiring enzyme AM442_12790 PF02817 e3 binding domain AM442_12795 PF02779 Transketolase, pyrimidine binding domain AM442_12795 PF02780 Transketolase, C-terminal domain AM442_12800 PF00676 Dehydrogenase E1 component AM442_12805 PF13737 AM442_12805 AM442_12810 PF04055 Radical SAM superfamily AM442_12820 PF14518 Iron-containing redox enzyme AM442_12825 PF00990 GGDEF domain AM442_12830 PF01264 Chorismate synthase AM442_12835 PF05175 Methyltransferase small domain AM442_12840 PF00291 Pyridoxal-phosphate dependent enzyme AM442_12845 PF05762 VWA domain containing CoxE-like protein AM442_12850 PF00004 ATPase family associated with various cellular activities (AAA) AM442_12860 PF05166 YcgL domain AM442_12890 PF01965 DJ-1/PfpI family AM442_12905 PF00199 Catalase AM442_12905 PF06628 Catalase-related immune-responsive AM442_12910 PF00561 alpha/beta hydrolase fold AM442_12915 PF06314 Acetoacetate decarboxylase (ADC) AM442_12920 PF00171 Aldehyde dehydrogenase family AM442_12925 PF00107 Zinc-binding dehydrogenase AM442_12925 PF08240 Alcohol dehydrogenase GroES-like domain AM442_12930 PF00474 Sodium:solute symporter family AM442_12935 PF04341 AM442_12935 AM442_12940 PF00501 AMP-binding enzyme AM442_12940 PF13193 AMP-binding enzyme C-terminal domain AM442_12950 PF00158 Sigma-54 interaction domain AM442_12950 PF02954 Bacterial regulatory protein, Fis family AM442_12950 PF06506 Propionate catabolism activator AM442_12955 PF00106 short chain dehydrogenase AM442_12960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_12960 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_12960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_12965 PF00300 Histidine phosphatase superfamily (branch 1) AM442_12975 PF01636 Phosphotransferase enzyme family AM442_12980 PF00171 Aldehyde dehydrogenase family AM442_12990 PF07690 Major Facilitator Superfamily AM442_12995 PF00920 Dehydratase family AM442_13000 PF00392 Bacterial regulatory proteins, gntR family AM442_13000 PF07729 FCD domain AM442_13005 PF09694 AM442_13005 AM442_13010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_13010 PF03466 LysR substrate binding domain AM442_13015 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM442_13015 PF13378 Enolase C-terminal domain-like AM442_13020 PF02426 Muconolactone delta-isomerase AM442_13025 PF00775 Dioxygenase AM442_13025 PF04444 Catechol dioxygenase N terminus AM442_13030 PF01144 Coenzyme A transferase AM442_13035 PF01144 Coenzyme A transferase AM442_13040 PF00108 Thiolase, N-terminal domain AM442_13040 PF02803 Thiolase, C-terminal domain AM442_13045 PF00561 alpha/beta hydrolase fold AM442_13050 PF00171 Aldehyde dehydrogenase family AM442_13060 PF01179 Copper amine oxidase, enzyme domain AM442_13060 PF02727 Copper amine oxidase, N2 domain AM442_13060 PF02728 Copper amine oxidase, N3 domain AM442_13060 PF07833 Copper amine oxidase N-terminal domain AM442_13065 PF12833 Helix-turn-helix domain AM442_13065 PF14525 AM442_13065 AM442_13070 PF01613 Flavin reductase like domain AM442_13075 PF00111 2Fe-2S iron-sulfur cluster binding domain AM442_13075 PF00175 Oxidoreductase NAD-binding domain AM442_13075 PF00970 Oxidoreductase FAD-binding domain AM442_13080 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_13085 PF00866 Ring hydroxylating beta subunit AM442_13090 PF00355 Rieske [2Fe-2S] domain AM442_13090 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM442_13095 PF13577 SnoaL-like domain AM442_13105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_13105 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM442_13110 PF01425 Amidase AM442_13115 PF01047 MarR family AM442_13120 PF07690 Major Facilitator Superfamily AM442_13125 PF03573 outer membrane porin, OprD family AM442_13130 PF00106 short chain dehydrogenase AM442_13135 PF00300 Histidine phosphatase superfamily (branch 1) AM442_13140 PF01636 Phosphotransferase enzyme family AM442_13145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_13145 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_13145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_13150 PF03466 LysR substrate binding domain AM442_13155 PF01614 Bacterial transcriptional regulator AM442_13155 PF09339 IclR helix-turn-helix domain AM442_13160 PF00753 Metallo-beta-lactamase superfamily AM442_13165 PF04143 AM442_13165 AM442_13170 PF04143 AM442_13170 AM442_13180 PF01011 PQQ enzyme repeat AM442_13185 PF04966 Carbohydrate-selective porin, OprB family AM442_13190 PF13229 Right handed beta helix region AM442_13195 PF01487 Type I 3-dehydroquinase AM442_13200 PF00775 Dioxygenase AM442_13205 PF00775 Dioxygenase AM442_13205 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AM442_13210 PF02627 Carboxymuconolactone decarboxylase family AM442_13215 PF07690 Major Facilitator Superfamily AM442_13220 PF00561 alpha/beta hydrolase fold AM442_13225 PF00206 Lyase AM442_13225 PF10397 Adenylosuccinate lyase C-terminus AM442_13230 PF00108 Thiolase, N-terminal domain AM442_13230 PF02803 Thiolase, C-terminal domain AM442_13235 PF01144 Coenzyme A transferase AM442_13240 PF01144 Coenzyme A transferase AM442_13245 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM442_13250 PF04977 Septum formation initiator AM442_13255 PF04239 Protein of unknown function (DUF421) AM442_13260 PF00113 Enolase, C-terminal TIM barrel domain AM442_13260 PF03952 Enolase, N-terminal domain AM442_13265 PF00793 DAHP synthetase I family AM442_13270 PF00117 Glutamine amidotransferase class-I AM442_13270 PF06418 CTP synthase N-terminus AM442_13280 PF10118 AM442_13280 AM442_13285 PF12146 Putative lysophospholipase AM442_13290 PF13472 GDSL-like Lipase/Acylhydrolase family AM442_13295 PF12680 SnoaL-like domain AM442_13300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_13300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_13305 PF03551 Transcriptional regulator PadR-like family AM442_13305 PF10400 Virulence activator alpha C-term AM442_13310 PF12697 Alpha/beta hydrolase family AM442_13315 PF00793 DAHP synthetase I family AM442_13320 PF02694 AM442_13320 AM442_13325 PF00004 ATPase family associated with various cellular activities (AAA) AM442_13325 PF02861 Clp amino terminal domain AM442_13325 PF07724 AAA domain (Cdc48 subfamily) AM442_13325 PF10431 C-terminal, D2-small domain, of ClpB protein AM442_13330 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM442_13340 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM442_13340 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM442_13350 PF01863 Protein of unknown function DUF45 AM442_13355 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM442_13360 PF00291 Pyridoxal-phosphate dependent enzyme AM442_13360 PF00585 C-terminal regulatory domain of Threonine dehydratase AM442_13365 PF02254 TrkA-N domain AM442_13370 PF02386 Cation transport protein AM442_13375 PF02253 Phospholipase A1 AM442_13380 PF00675 Insulinase (Peptidase family M16) AM442_13380 PF05193 Peptidase M16 inactive domain AM442_13380 PF08367 Peptidase M16C associated AM442_13385 PF00593 TonB dependent receptor AM442_13385 PF07715 TonB-dependent Receptor Plug Domain AM442_13390 PF00294 pfkB family carbohydrate kinase AM442_13395 PF00355 Rieske [2Fe-2S] domain AM442_13400 PF07290 AM442_13400 AM442_13420 PF01654 AM442_13420 AM442_13425 PF02322 AM442_13425 AM442_13430 PF08173 AM442_13430 AM442_13435 PF09600 AM442_13435 AM442_13440 PF00583 Acetyltransferase (GNAT) family AM442_13445 PF09829 AM442_13445 AM442_13450 PF00881 Nitroreductase family AM442_13455 PF00448 SRP54-type protein, GTPase domain AM442_13455 PF02881 SRP54-type protein, helical bundle domain AM442_13475 PF11042 AM442_13475 AM442_13480 PF00571 CBS domain AM442_13485 PF00202 Aminotransferase class-III AM442_13490 PF00462 Glutaredoxin AM442_13500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_13500 PF03466 LysR substrate binding domain AM442_13505 PF00557 Metallopeptidase family M24 AM442_13510 PF05525 AM442_13510 AM442_13515 PF03928 Domain of unknown function (DUF336) AM442_13530 PF00561 alpha/beta hydrolase fold AM442_13535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM442_13535 PF00381 PTS HPr component phosphorylation site AM442_13535 PF00391 PEP-utilising enzyme, mobile domain AM442_13535 PF02896 PEP-utilising enzyme, TIM barrel domain AM442_13535 PF05524 PEP-utilising enzyme, N-terminal AM442_13540 PF00294 pfkB family carbohydrate kinase AM442_13545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM442_13545 PF02378 Phosphotransferase system, EIIC AM442_13550 PF08308 AM442_13550 AM442_13565 PF13693 Winged helix-turn-helix DNA-binding AM442_13570 PF00665 Integrase core domain AM442_13570 PF09299 Mu transposase, C-terminal AM442_13575 PF13401 AAA domain AM442_13595 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM442_13605 PF07352 Bacteriophage Mu Gam like protein AM442_13610 PF00216 Bacterial DNA-binding protein AM442_13630 PF06252 AM442_13630 AM442_13635 PF08765 Mor transcription activator family AM442_13640 PF05838 Glycosyl hydrolase 108 AM442_13640 PF09374 Predicted Peptidoglycan domain AM442_13660 PF11985 AM442_13660 AM442_13680 PF13643 AM442_13680 AM442_13685 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM442_13690 PF06074 AM442_13690 AM442_13695 PF04233 AM442_13695 AM442_13700 PF05069 AM442_13700 AM442_13705 PF10123 AM442_13705 AM442_13715 PF10124 AM442_13715 AM442_13720 PF07030 AM442_13720 AM442_13725 PF08873 AM442_13725 AM442_13745 PF17482 AM442_13745 AM442_13775 PF07157 AM442_13775 AM442_13785 PF06890 Bacteriophage Mu Gp45 protein AM442_13790 PF07409 AM442_13790 AM442_13795 PF04865 AM442_13795 AM442_13800 PF10076 AM442_13800 AM442_13805 PF05268 AM442_13805 AM442_13810 PF01047 MarR family AM442_13825 PF00563 EAL domain AM442_13825 PF00990 GGDEF domain AM442_13825 PF08447 PAS fold AM442_13825 PF08448 PAS fold AM442_13830 PF00582 Universal stress protein family AM442_13835 PF07995 Glucose / Sorbosone dehydrogenase AM442_13840 PF02586 Uncharacterised ACR, COG2135 AM442_13845 PF00916 AM442_13845 AM442_13845 PF01740 STAS domain AM442_13850 PF00082 Subtilase family AM442_13850 PF05922 Peptidase inhibitor I9 AM442_13855 PF07859 alpha/beta hydrolase fold AM442_13860 PF00324 Amino acid permease AM442_13865 PF00266 Aminotransferase class-V AM442_13870 PF01037 AsnC family AM442_13870 PF13412 Winged helix-turn-helix DNA-binding AM442_13875 PF13302 Acetyltransferase (GNAT) domain AM442_13895 PF05666 AM442_13895 AM442_13900 PF13737 AM442_13900 AM442_13905 PF13419 Haloacid dehalogenase-like hydrolase AM442_13910 PF01479 S4 domain AM442_13915 PF00154 recA bacterial DNA recombination protein AM442_13920 PF02631 RecX family AM442_13930 PF13174 Tetratricopeptide repeat AM442_13930 PF16331 AM442_13930 AM442_13935 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_13935 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AM442_13940 PF07977 FabA-like domain AM442_13945 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_13945 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM442_13945 PF14602 Hexapeptide repeat of succinyl-transferase AM442_13950 PF03938 Outer membrane protein (OmpH-like) AM442_13955 PF01103 Surface antigen AM442_13955 PF07244 Surface antigen variable number repeat AM442_13960 PF02163 Peptidase family M50 AM442_13960 PF13180 PDZ domain AM442_13965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM442_13965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AM442_13965 PF13288 DXP reductoisomerase C-terminal domain AM442_13970 PF01148 Cytidylyltransferase family AM442_13975 PF01255 Putative undecaprenyl diphosphate synthase AM442_13980 PF01765 Ribosome recycling factor AM442_13985 PF00696 Amino acid kinase family AM442_13990 PF00919 Uncharacterized protein family UPF0004 AM442_13990 PF04055 Radical SAM superfamily AM442_14000 PF00512 His Kinase A (phospho-acceptor) domain AM442_14000 PF00989 PAS fold AM442_14000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_14005 PF00072 Response regulator receiver domain AM442_14005 PF00158 Sigma-54 interaction domain AM442_14005 PF02954 Bacterial regulatory protein, Fis family AM442_14010 PF00440 Bacterial regulatory proteins, tetR family AM442_14015 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM442_14015 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM442_14025 PF02542 YgbB family AM442_14035 PF01266 FAD dependent oxidoreductase AM442_14060 PF00206 Lyase AM442_14060 PF10415 Fumarase C C-terminus AM442_14065 PF01370 NAD dependent epimerase/dehydratase family AM442_14070 PF02635 DsrE/DsrF-like family AM442_14085 PF04358 DsrC like protein AM442_14090 PF00892 EamA-like transporter family AM442_14095 PF00155 Aminotransferase class I and II AM442_14095 PF00392 Bacterial regulatory proteins, gntR family AM442_14100 PF01638 HxlR-like helix-turn-helix AM442_14105 PF00994 Probable molybdopterin binding domain AM442_14105 PF03453 MoeA N-terminal region (domain I and II) AM442_14105 PF03454 MoeA C-terminal region (domain IV) AM442_14110 PF00994 Probable molybdopterin binding domain AM442_14110 PF01967 MoaC family AM442_14115 PF02391 MoaE protein AM442_14120 PF02597 ThiS family AM442_14125 PF04055 Radical SAM superfamily AM442_14125 PF06463 Molybdenum Cofactor Synthesis C AM442_14125 PF13353 4Fe-4S single cluster domain AM442_14130 PF00384 Molybdopterin oxidoreductase AM442_14130 PF01568 Molydopterin dinucleotide binding domain AM442_14130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM442_14135 PF12804 MobA-like NTP transferase domain AM442_14140 PF00384 Molybdopterin oxidoreductase AM442_14140 PF01568 Molydopterin dinucleotide binding domain AM442_14140 PF04324 BFD-like [2Fe-2S] binding domain AM442_14140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM442_14145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_14145 PF13806 Rieske-like [2Fe-2S] domain AM442_14150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM442_14150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM442_14150 PF04324 BFD-like [2Fe-2S] binding domain AM442_14150 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_14160 PF00072 Response regulator receiver domain AM442_14160 PF03861 ANTAR domain AM442_14165 PF13379 NMT1-like family AM442_14170 PF00817 impB/mucB/samB family AM442_14170 PF11799 impB/mucB/samB family C-terminal domain AM442_14170 PF13438 AM442_14170 AM442_14175 PF01220 Dehydroquinase class II AM442_14180 PF00364 Biotin-requiring enzyme AM442_14185 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AM442_14185 PF02785 Biotin carboxylase C-terminal domain AM442_14185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_14200 PF12832 MFS_1 like family AM442_14205 PF14518 Iron-containing redox enzyme AM442_14210 PF00440 Bacterial regulatory proteins, tetR family AM442_14225 PF03929 AM442_14225 AM442_14230 PF01645 Conserved region in glutamate synthase AM442_14235 PF12146 Putative lysophospholipase AM442_14240 PF02698 DUF218 domain AM442_14245 PF01565 FAD binding domain AM442_14245 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM442_14250 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM442_14255 PF10282 Lactonase, 7-bladed beta-propeller AM442_14260 PF00465 Iron-containing alcohol dehydrogenase AM442_14265 PF13279 Thioesterase-like superfamily AM442_14270 PF04185 Phosphoesterase family AM442_14270 PF05506 AM442_14270 AM442_14275 PF12169 DNA polymerase III subunits gamma and tau domain III AM442_14275 PF13177 DNA polymerase III, delta subunit AM442_14280 PF07690 Major Facilitator Superfamily AM442_14285 PF00440 Bacterial regulatory proteins, tetR family AM442_14290 PF00144 Beta-lactamase AM442_14300 PF01575 MaoC like domain AM442_14305 PF13561 Enoyl-(Acyl carrier protein) reductase AM442_14310 PF00108 Thiolase, N-terminal domain AM442_14310 PF02803 Thiolase, C-terminal domain AM442_14315 PF05232 AM442_14315 AM442_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_14320 PF03466 LysR substrate binding domain AM442_14325 PF00923 Transaldolase AM442_14330 PF01810 AM442_14330 AM442_14335 PF01037 AsnC family AM442_14335 PF13412 Winged helix-turn-helix DNA-binding AM442_14340 PF03594 AM442_14340 AM442_14345 PF02308 AM442_14345 AM442_14350 PF00122 E1-E2 ATPase AM442_14350 PF00690 Cation transporter/ATPase, N-terminus AM442_14350 PF00702 haloacid dehalogenase-like hydrolase AM442_14355 PF06271 AM442_14355 AM442_14370 PF00582 Universal stress protein family AM442_14375 PF00005 ABC transporter AM442_14395 PF03922 OmpW family AM442_14400 PF00593 TonB dependent receptor AM442_14400 PF07715 TonB-dependent Receptor Plug Domain AM442_14405 PF13527 Acetyltransferase (GNAT) domain AM442_14435 PF00924 Mechanosensitive ion channel AM442_14440 PF00593 TonB dependent receptor AM442_14440 PF07715 TonB-dependent Receptor Plug Domain AM442_14445 PF00440 Bacterial regulatory proteins, tetR family AM442_14460 PF01037 AsnC family AM442_14460 PF13412 Winged helix-turn-helix DNA-binding AM442_14465 PF01817 Chorismate mutase type II AM442_14470 PF00106 short chain dehydrogenase AM442_14475 PF00106 short chain dehydrogenase AM442_14480 PF13417 Glutathione S-transferase, N-terminal domain AM442_14480 PF14497 Glutathione S-transferase, C-terminal domain AM442_14485 PF01433 Peptidase family M1 AM442_14485 PF11940 Domain of unknown function (DUF3458) AM442_14485 PF17432 AM442_14485 AM442_14500 PF02110 Hydroxyethylthiazole kinase family AM442_14505 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase AM442_14510 PF05970 AM442_14510 AM442_14510 PF14493 AM442_14510 AM442_14515 PF00465 Iron-containing alcohol dehydrogenase AM442_14520 PF12146 Putative lysophospholipase AM442_14530 PF00171 Aldehyde dehydrogenase family AM442_14535 PF13520 Amino acid permease AM442_14540 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM442_14545 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM442_14550 PF00117 Glutamine amidotransferase class-I AM442_14555 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM442_14555 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AM442_14560 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM442_14565 PF00149 Calcineurin-like phosphoesterase AM442_14575 PF00881 Nitroreductase family AM442_14585 PF17209 AM442_14585 AM442_14590 PF01715 IPP transferase AM442_14595 PF01119 DNA mismatch repair protein, C-terminal domain AM442_14595 PF08676 MutL C terminal dimerisation domain AM442_14595 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_14600 PF02367 Uncharacterised P-loop hydrolase UPF0079 AM442_14605 PF00849 RNA pseudouridylate synthase AM442_14610 PF04221 RelB antitoxin AM442_14615 PF00583 Acetyltransferase (GNAT) family AM442_14620 PF00849 RNA pseudouridylate synthase AM442_14620 PF01479 S4 domain AM442_14630 PF04284 AM442_14630 AM442_14635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_14635 PF03466 LysR substrate binding domain AM442_14640 PF10670 AM442_14640 AM442_14650 PF07690 Major Facilitator Superfamily AM442_14655 PF00520 Ion transport protein AM442_14670 PF00330 Aconitase family (aconitate hydratase) AM442_14670 PF06434 Aconitate hydratase 2 N-terminus AM442_14670 PF11791 Aconitate B N-terminal domain AM442_14685 PF00717 Peptidase S24-like AM442_14690 PF00817 impB/mucB/samB family AM442_14690 PF11799 impB/mucB/samB family C-terminal domain AM442_14715 PF16082 AM442_14715 AM442_14740 PF10547 AM442_14740 AM442_14760 PF10547 AM442_14760 AM442_14770 PF01381 Helix-turn-helix AM442_14770 PF06114 Domain of unknown function (DUF955) AM442_14815 PF09327 AM442_14815 AM442_14815 PF15711 AM442_14815 AM442_14835 PF05016 Plasmid stabilisation system protein AM442_14840 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AM442_14855 PF10547 AM442_14855 AM442_14910 PF12571 AM442_14910 AM442_14925 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM442_14980 PF10547 AM442_14980 AM442_14985 PF15919 AM442_14985 AM442_15010 PF12844 Helix-turn-helix domain AM442_15015 PF05866 Endodeoxyribonuclease RusA AM442_15030 PF01695 IstB-like ATP binding protein AM442_15040 PF00145 C-5 cytosine-specific DNA methylase AM442_15055 PF13392 HNH endonuclease AM442_15085 PF01381 Helix-turn-helix AM442_15090 PF00717 Peptidase S24-like AM442_15090 PF01381 Helix-turn-helix AM442_15105 PF10065 AM442_15105 AM442_15130 PF13935 AM442_15130 AM442_15155 PF00589 Phage integrase family AM442_15155 PF13356 Domain of unknown function (DUF4102) AM442_15160 PF04357 AM442_15160 AM442_15165 PF01103 Surface antigen AM442_15165 PF07244 Surface antigen variable number repeat AM442_15165 PF17243 AM442_15165 AM442_15170 PF07690 Major Facilitator Superfamily AM442_15175 PF03232 AM442_15175 AM442_15180 PF10973 AM442_15180 AM442_15185 PF00120 Glutamine synthetase, catalytic domain AM442_15190 PF00072 Response regulator receiver domain AM442_15190 PF00486 Transcriptional regulatory protein, C terminal AM442_15195 PF00512 His Kinase A (phospho-acceptor) domain AM442_15195 PF00582 Universal stress protein family AM442_15195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_15195 PF02702 Osmosensitive K+ channel His kinase sensor domain AM442_15195 PF13493 Domain of unknown function (DUF4118) AM442_15200 PF02669 AM442_15200 AM442_15205 PF00122 E1-E2 ATPase AM442_15205 PF00702 haloacid dehalogenase-like hydrolase AM442_15210 PF03814 AM442_15210 AM442_15215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM442_15220 PF02152 Dihydroneopterin aldolase AM442_15225 PF03109 AM442_15225 AM442_15230 PF00899 ThiF family AM442_15235 PF01613 Flavin reductase like domain AM442_15240 PF00501 AMP-binding enzyme AM442_15240 PF13193 AMP-binding enzyme C-terminal domain AM442_15245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_15245 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_15245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_15250 PF00106 short chain dehydrogenase AM442_15255 PF12625 AM442_15255 AM442_15255 PF12833 Helix-turn-helix domain AM442_15260 PF05175 Methyltransferase small domain AM442_15265 PF00472 RF-1 domain AM442_15265 PF03462 PCRF domain AM442_15270 PF17124 AM442_15270 AM442_15275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_15275 PF03466 LysR substrate binding domain AM442_15295 PF00296 Luciferase-like monooxygenase AM442_15305 PF13994 AM442_15305 AM442_15310 PF13641 Glycosyltransferase like family 2 AM442_15315 PF01522 Polysaccharide deacetylase AM442_15315 PF14883 Hypothetical glycosyl hydrolase family 13 AM442_15330 PF03618 AM442_15330 AM442_15335 PF00391 PEP-utilising enzyme, mobile domain AM442_15335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM442_15335 PF02896 PEP-utilising enzyme, TIM barrel domain AM442_15340 PF06271 AM442_15340 AM442_15340 PF14237 AM442_15340 AM442_15345 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM442_15345 PF06481 COX Aromatic Rich Motif AM442_15350 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM442_15355 PF00510 Cytochrome c oxidase subunit III AM442_15360 PF03626 AM442_15360 AM442_15365 PF01040 UbiA prenyltransferase family AM442_15370 PF01250 Ribosomal protein S6 AM442_15375 PF01084 Ribosomal protein S18 AM442_15380 PF01281 Ribosomal protein L9, N-terminal domain AM442_15380 PF03948 Ribosomal protein L9, C-terminal domain AM442_15385 PF00772 DnaB-like helicase N terminal domain AM442_15385 PF03796 DnaB-like helicase C terminal domain AM442_15390 PF00842 Alanine racemase, C-terminal domain AM442_15390 PF01168 Alanine racemase, N-terminal domain AM442_15395 PF00227 Proteasome subunit AM442_15400 PF01841 Transglutaminase-like superfamily AM442_15400 PF08379 AM442_15400 AM442_15405 PF04168 AM442_15405 AM442_15410 PF14403 AM442_15410 AM442_15420 PF13280 AM442_15420 AM442_15425 PF01134 Glucose inhibited division protein A AM442_15425 PF13932 GidA associated domain 3 AM442_15435 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AM442_15440 PF11906 AM442_15440 AM442_15445 PF02954 Bacterial regulatory protein, Fis family AM442_15450 PF01808 AICARFT/IMPCHase bienzyme AM442_15450 PF02142 MGS-like domain AM442_15455 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM442_15455 PF02843 Phosphoribosylglycinamide synthetase, C domain AM442_15455 PF02844 Phosphoribosylglycinamide synthetase, N domain AM442_15460 PF03180 NLPA lipoprotein AM442_15465 PF00005 ABC transporter AM442_15465 PF09383 NIL domain AM442_15470 PF00528 Binding-protein-dependent transport system inner membrane component AM442_15475 PF00753 Metallo-beta-lactamase superfamily AM442_15475 PF16123 AM442_15475 AM442_15485 PF00375 Sodium:dicarboxylate symporter family AM442_15490 PF00440 Bacterial regulatory proteins, tetR family AM442_15490 PF16859 AM442_15490 AM442_15495 PF07690 Major Facilitator Superfamily AM442_15500 PF13673 Acetyltransferase (GNAT) domain AM442_15505 PF07995 Glucose / Sorbosone dehydrogenase AM442_15510 PF00892 EamA-like transporter family AM442_15515 PF01177 Asp/Glu/Hydantoin racemase AM442_15520 PF03886 Protein of unknown function (DUF330) AM442_15525 PF02470 AM442_15525 AM442_15530 PF04403 AM442_15530 AM442_15535 PF04403 AM442_15535 AM442_15540 PF02080 TrkA-C domain AM442_15540 PF06826 AM442_15540 AM442_15545 PF00155 Aminotransferase class I and II AM442_15550 PF13737 AM442_15550 AM442_15565 PF00440 Bacterial regulatory proteins, tetR family AM442_15575 PF00083 Sugar (and other) transporter AM442_15575 PF08946 Osmosensory transporter coiled coil AM442_15585 PF05229 AM442_15585 AM442_15590 PF00577 Outer membrane usher protein AM442_15590 PF13953 PapC C-terminal domain AM442_15595 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM442_15600 PF05229 AM442_15600 AM442_15610 PF13737 AM442_15610 AM442_15615 PF13737 AM442_15615 AM442_15630 PF00392 Bacterial regulatory proteins, gntR family AM442_15630 PF07729 FCD domain AM442_15635 PF05673 Protein of unknown function (DUF815) AM442_15640 PF03616 AM442_15640 AM442_15645 PF00561 alpha/beta hydrolase fold AM442_15650 PF02311 AraC-like ligand binding domain AM442_15650 PF12833 Helix-turn-helix domain AM442_15655 PF01810 AM442_15655 AM442_15665 PF04940 Sensors of blue-light using FAD AM442_15670 PF04076 Bacterial OB fold (BOF) protein AM442_15675 PF00535 Glycosyl transferase family 2 AM442_15680 PF05401 Nodulation protein S (NodS) AM442_15685 PF02585 GlcNAc-PI de-N-acetylase AM442_15700 PF09939 AM442_15700 AM442_15705 PF00324 Amino acid permease AM442_15710 PF00171 Aldehyde dehydrogenase family AM442_15715 PF00202 Aminotransferase class-III AM442_15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_15720 PF03466 LysR substrate binding domain AM442_15725 PF00440 Bacterial regulatory proteins, tetR family AM442_15745 PF04829 AM442_15745 AM442_15760 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM442_15760 PF08479 POTRA domain, ShlB-type AM442_15760 PF17287 AM442_15760 AM442_15785 PF00069 Protein kinase domain AM442_15790 PF01734 Patatin-like phospholipase AM442_15790 PF11815 AM442_15790 AM442_15795 PF05673 Protein of unknown function (DUF815) AM442_15805 PF00814 Glycoprotease family AM442_15810 PF01165 Ribosomal protein S21 AM442_15815 PF09424 Yqey-like protein AM442_15820 PF01435 Peptidase family M48 AM442_15825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM442_15825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM442_15835 PF01435 Peptidase family M48 AM442_15840 PF00156 Phosphoribosyl transferase domain AM442_15840 PF13522 Glutamine amidotransferase domain AM442_15845 PF02674 AM442_15845 AM442_15850 PF01180 Dihydroorotate dehydrogenase AM442_15855 PF04612 Type II secretion system (T2SS), protein M AM442_15860 PF05134 Type II secretion system (T2SS), protein L AM442_15860 PF12693 GspL periplasmic domain AM442_15865 PF00300 Histidine phosphatase superfamily (branch 1) AM442_15870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM442_15870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM442_15875 PF00881 Nitroreductase family AM442_15885 PF00270 DEAD/DEAH box helicase AM442_15885 PF00271 Helicase conserved C-terminal domain AM442_15890 PF00313 'Cold-shock' DNA-binding domain AM442_15895 PF01206 Sulfurtransferase TusA AM442_15900 PF00140 Sigma-70 factor, region 1 AM442_15900 PF04542 Sigma-70 region 2 AM442_15900 PF04545 Sigma-70, region 4 AM442_15905 PF04241 AM442_15905 AM442_15910 PF02597 ThiS family AM442_15915 PF05690 Thiazole biosynthesis protein ThiG AM442_15925 PF03883 AM442_15925 AM442_15935 PF00753 Metallo-beta-lactamase superfamily AM442_15940 PF01546 Peptidase family M20/M25/M40 AM442_15940 PF07687 Peptidase dimerisation domain AM442_15950 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM442_15950 PF02153 Prephenate dehydrogenase AM442_15955 PF00800 Prephenate dehydratase AM442_15955 PF01817 Chorismate mutase type II AM442_15955 PF01842 ACT domain AM442_15960 PF00756 Putative esterase AM442_15965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_15965 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_15965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_15970 PF00375 Sodium:dicarboxylate symporter family AM442_15980 PF00591 Glycosyl transferase family, a/b domain AM442_15980 PF02885 Glycosyl transferase family, helical bundle domain AM442_15985 PF07023 AM442_15985 AM442_15990 PF01513 ATP-NAD kinase AM442_15995 PF00905 Penicillin binding protein transpeptidase domain AM442_15995 PF00912 Transglycosylase AM442_15995 PF14814 Bifunctional transglycosylase second domain AM442_16005 PF00293 NUDIX domain AM442_16005 PF02581 Thiamine monophosphate synthase/TENI AM442_16010 PF10636 Hemin uptake protein hemP AM442_16015 PF00512 His Kinase A (phospho-acceptor) domain AM442_16015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_16020 PF00072 Response regulator receiver domain AM442_16020 PF00486 Transcriptional regulatory protein, C terminal AM442_16025 PF04076 Bacterial OB fold (BOF) protein AM442_16030 PF00437 Type II/IV secretion system protein AM442_16030 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM442_16035 PF02308 AM442_16035 AM442_16035 PF13194 AM442_16035 AM442_16040 PF01980 Uncharacterised protein family UPF0066 AM442_16045 PF00175 Oxidoreductase NAD-binding domain AM442_16045 PF00970 Oxidoreductase FAD-binding domain AM442_16050 PF02567 Phenazine biosynthesis-like protein AM442_16055 PF00155 Aminotransferase class I and II AM442_16055 PF00392 Bacterial regulatory proteins, gntR family AM442_16060 PF01136 AM442_16060 AM442_16060 PF16325 AM442_16060 AM442_16070 PF00893 Small Multidrug Resistance protein AM442_16075 PF00005 ABC transporter AM442_16080 PF00528 Binding-protein-dependent transport system inner membrane component AM442_16085 PF00528 Binding-protein-dependent transport system inner membrane component AM442_16090 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_16100 PF16576 AM442_16100 AM442_16105 PF00873 AcrB/AcrD/AcrF family AM442_16115 PF00464 Serine hydroxymethyltransferase AM442_16125 PF03583 Secretory lipase AM442_16130 PF12843 AM442_16130 AM442_16150 PF05838 Glycosyl hydrolase 108 AM442_16150 PF09374 Predicted Peptidoglycan domain AM442_16160 PF13550 AM442_16160 AM442_16165 PF06805 AM442_16165 AM442_16170 PF00877 NlpC/P60 family AM442_16170 PF14464 Prokaryotic homologs of the JAB domain AM442_16175 PF05100 AM442_16175 AM442_16185 PF05939 AM442_16185 AM442_16190 PF07927 YcfA-like protein AM442_16195 PF15970 AM442_16195 AM442_16220 PF16459 AM442_16220 AM442_16225 PF16460 AM442_16225 AM442_16230 PF11367 Protein of unknown function (DUF3168) AM442_16235 PF04883 AM442_16235 AM442_16240 PF05521 Phage head-tail joining protein AM442_16255 PF05065 Phage capsid family AM442_16260 PF00574 Clp protease AM442_16270 PF04860 Phage portal protein AM442_16280 PF03354 AM442_16280 AM442_16305 PF03592 Terminase small subunit AM442_16310 PF01844 HNH endonuclease AM442_16320 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM442_16355 PF01844 HNH endonuclease AM442_16375 PF01555 DNA methylase AM442_16380 PF00772 DnaB-like helicase N terminal domain AM442_16380 PF03796 DnaB-like helicase C terminal domain AM442_16385 PF00392 Bacterial regulatory proteins, gntR family AM442_16395 PF01381 Helix-turn-helix AM442_16400 PF00717 Peptidase S24-like AM442_16400 PF01381 Helix-turn-helix AM442_16445 PF03837 AM442_16445 AM442_16450 PF09588 YqaJ-like viral recombinase domain AM442_16480 PF00589 Phage integrase family AM442_16480 PF13356 Domain of unknown function (DUF4102) AM442_16485 PF00005 ABC transporter AM442_16490 PF01061 AM442_16490 AM442_16495 PF14489 QueF-like protein AM442_16495 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM442_16505 PF01098 AM442_16505 AM442_16510 PF13406 Transglycosylase SLT domain AM442_16515 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AM442_16520 PF06127 AM442_16520 AM442_16525 PF05437 AM442_16525 AM442_16530 PF03591 AM442_16530 AM442_16535 PF02311 AraC-like ligand binding domain AM442_16535 PF12833 Helix-turn-helix domain AM442_16540 PF11948 AM442_16540 AM442_16545 PF00889 Elongation factor TS AM442_16550 PF00318 Ribosomal protein S2 AM442_16555 PF00557 Metallopeptidase family M24 AM442_16560 PF03922 OmpW family AM442_16565 PF07690 Major Facilitator Superfamily AM442_16570 PF07690 Major Facilitator Superfamily AM442_16575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_16575 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_16580 PF04055 Radical SAM superfamily AM442_16580 PF16881 AM442_16580 AM442_16585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_16585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_16585 PF09317 AM442_16585 AM442_16590 PF02627 Carboxymuconolactone decarboxylase family AM442_16595 PF03412 Peptidase C39 family AM442_16600 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM442_16600 PF05221 S-adenosyl-L-homocysteine hydrolase AM442_16605 PF02219 Methylenetetrahydrofolate reductase AM442_16610 PF04452 RNA methyltransferase AM442_16615 PF00989 PAS fold AM442_16615 PF08447 PAS fold AM442_16625 PF00563 EAL domain AM442_16625 PF00990 GGDEF domain AM442_16630 PF00390 Malic enzyme, N-terminal domain AM442_16630 PF01515 Phosphate acetyl/butaryl transferase AM442_16630 PF03949 Malic enzyme, NAD binding domain AM442_16635 PF01743 Poly A polymerase head domain AM442_16635 PF12627 Probable RNA and SrmB- binding site of polymerase A AM442_16640 PF13180 PDZ domain AM442_16640 PF13365 Trypsin-like peptidase domain AM442_16645 PF01784 NIF3 (NGG1p interacting factor 3) AM442_16650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM442_16650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM442_16670 PF10881 AM442_16670 AM442_16680 PF03583 Secretory lipase AM442_16685 PF01040 UbiA prenyltransferase family AM442_16690 PF04345 Chorismate lyase AM442_16695 PF00120 Glutamine synthetase, catalytic domain AM442_16695 PF03951 Glutamine synthetase, beta-Grasp domain AM442_16700 PF00854 POT family AM442_16705 PF00557 Metallopeptidase family M24 AM442_16705 PF01321 Creatinase/Prolidase N-terminal domain AM442_16705 PF16188 AM442_16705 AM442_16705 PF16189 AM442_16705 AM442_16710 PF00117 Glutamine amidotransferase class-I AM442_16715 PF01433 Peptidase family M1 AM442_16715 PF11838 ERAP1-like C-terminal domain AM442_16720 PF00593 TonB dependent receptor AM442_16720 PF07715 TonB-dependent Receptor Plug Domain AM442_16725 PF00591 Glycosyl transferase family, a/b domain AM442_16725 PF02885 Glycosyl transferase family, helical bundle domain AM442_16730 PF00218 Indole-3-glycerol phosphate synthase AM442_16735 PF01713 Smr domain AM442_16740 PF02625 XdhC and CoxI family AM442_16740 PF13478 XdhC Rossmann domain AM442_16745 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM442_16745 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM442_16750 PF00941 FAD binding domain in molybdopterin dehydrogenase AM442_16750 PF01799 [2Fe-2S] binding domain AM442_16750 PF03450 CO dehydrogenase flavoprotein C-terminal domain AM442_16755 PF01227 GTP cyclohydrolase I AM442_16765 PF00144 Beta-lactamase AM442_16775 PF11220 AM442_16775 AM442_16780 PF05675 AM442_16780 AM442_16785 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM442_16790 PF01471 Putative peptidoglycan binding domain AM442_16790 PF03734 L,D-transpeptidase catalytic domain AM442_16795 PF00425 chorismate binding enzyme AM442_16800 PF01648 4'-phosphopantetheinyl transferase superfamily AM442_16805 PF00975 Thioesterase domain AM442_16810 PF00005 ABC transporter AM442_16810 PF00664 ABC transporter transmembrane region AM442_16815 PF00005 ABC transporter AM442_16815 PF00664 ABC transporter transmembrane region AM442_16825 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM442_16830 PF00550 Phosphopantetheine attachment site AM442_16830 PF00857 Isochorismatase family AM442_16835 PF00501 AMP-binding enzyme AM442_16835 PF13193 AMP-binding enzyme C-terminal domain AM442_16840 PF00668 Condensation domain AM442_16845 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM442_16850 PF00593 TonB dependent receptor AM442_16850 PF07715 TonB-dependent Receptor Plug Domain AM442_16855 PF01497 Periplasmic binding protein AM442_16860 PF00005 ABC transporter AM442_16865 PF01032 FecCD transport family AM442_16870 PF01032 FecCD transport family AM442_16875 PF00550 Phosphopantetheine attachment site AM442_16875 PF00668 Condensation domain AM442_16880 PF00501 AMP-binding enzyme AM442_16880 PF13193 AMP-binding enzyme C-terminal domain AM442_16885 PF04954 Siderophore-interacting protein AM442_16885 PF08021 Siderophore-interacting FAD-binding domain AM442_16890 PF08348 AM442_16890 AM442_16890 PF13309 AM442_16890 AM442_16895 PF00291 Pyridoxal-phosphate dependent enzyme AM442_16900 PF02678 Pirin AM442_16905 PF00440 Bacterial regulatory proteins, tetR family AM442_16915 PF03453 MoeA N-terminal region (domain I and II) AM442_16925 PF04328 AM442_16925 AM442_16930 PF02554 AM442_16930 AM442_16930 PF13722 AM442_16930 AM442_16935 PF01132 Elongation factor P (EF-P) OB domain AM442_16935 PF08207 Elongation factor P (EF-P) KOW-like domain AM442_16935 PF09285 Elongation factor P, C-terminal AM442_16940 PF04055 Radical SAM superfamily AM442_16940 PF13394 4Fe-4S single cluster domain AM442_16950 PF00563 EAL domain AM442_16955 PF01197 Ribosomal protein L31 AM442_16960 PF13593 SBF-like CPA transporter family (DUF4137) AM442_16965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_16970 PF07690 Major Facilitator Superfamily AM442_16975 PF05362 Lon protease (S16) C-terminal proteolytic domain AM442_16975 PF13654 AAA domain AM442_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_16980 PF03466 LysR substrate binding domain AM442_16985 PF01476 LysM domain AM442_16985 PF01551 Peptidase family M23 AM442_16990 PF01975 Survival protein SurE AM442_17005 PF00768 D-alanyl-D-alanine carboxypeptidase AM442_17005 PF07943 Penicillin-binding protein 5, C-terminal domain AM442_17010 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_17015 PF00293 NUDIX domain AM442_17020 PF03054 tRNA methyl transferase AM442_17025 PF04356 Protein of unknown function (DUF489) AM442_17030 PF00206 Lyase AM442_17030 PF08328 Adenylosuccinate lyase C-terminal AM442_17035 PF09997 AM442_17035 AM442_17050 PF01343 Peptidase family S49 AM442_17050 PF08496 AM442_17050 AM442_17055 PF00005 ABC transporter AM442_17060 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17060 PF11812 AM442_17060 AM442_17065 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17065 PF12501 AM442_17065 AM442_17070 PF12849 PBP superfamily domain AM442_17075 PF00324 Amino acid permease AM442_17080 PF00205 Thiamine pyrophosphate enzyme, central domain AM442_17080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM442_17080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM442_17085 PF01037 AsnC family AM442_17085 PF13404 AsnC-type helix-turn-helix domain AM442_17090 PF00171 Aldehyde dehydrogenase family AM442_17095 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM442_17100 PF00202 Aminotransferase class-III AM442_17105 PF04402 Protein of unknown function (DUF541) AM442_17110 PF00440 Bacterial regulatory proteins, tetR family AM442_17115 PF14539 Domain of unknown function (DUF4442) AM442_17120 PF00487 AM442_17120 AM442_17125 PF00175 Oxidoreductase NAD-binding domain AM442_17125 PF00970 Oxidoreductase FAD-binding domain AM442_17130 PF00440 Bacterial regulatory proteins, tetR family AM442_17135 PF01594 AM442_17135 AM442_17140 PF00176 SNF2 family N-terminal domain AM442_17140 PF00271 Helicase conserved C-terminal domain AM442_17140 PF12137 RNA polymerase recycling family C-terminal AM442_17145 PF00849 RNA pseudouridylate synthase AM442_17155 PF00202 Aminotransferase class-III AM442_17160 PF02581 Thiamine monophosphate synthase/TENI AM442_17165 PF06127 AM442_17165 AM442_17170 PF01928 CYTH domain AM442_17170 PF05235 CHAD domain AM442_17180 PF11342 Protein of unknown function (DUF3144) AM442_17185 PF00675 Insulinase (Peptidase family M16) AM442_17185 PF05193 Peptidase M16 inactive domain AM442_17190 PF02567 Phenazine biosynthesis-like protein AM442_17195 PF00375 Sodium:dicarboxylate symporter family AM442_17200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_17200 PF03466 LysR substrate binding domain AM442_17205 PF06779 AM442_17205 AM442_17225 PF00180 Isocitrate/isopropylmalate dehydrogenase AM442_17230 PF00849 RNA pseudouridylate synthase AM442_17235 PF03971 Monomeric isocitrate dehydrogenase AM442_17240 PF05299 M61 glycyl aminopeptidase AM442_17260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_17265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM442_17270 PF00875 DNA photolyase AM442_17270 PF03441 FAD binding domain of DNA photolyase AM442_17285 PF13641 Glycosyltransferase like family 2 AM442_17300 PF02350 UDP-N-acetylglucosamine 2-epimerase AM442_17310 PF01988 AM442_17310 AM442_17315 PF03060 Nitronate monooxygenase AM442_17320 PF01207 Dihydrouridine synthase (Dus) AM442_17325 PF07759 AM442_17325 AM442_17330 PF12710 haloacid dehalogenase-like hydrolase AM442_17335 PF00696 Amino acid kinase family AM442_17335 PF01472 PUA domain AM442_17340 PF01018 GTP1/OBG AM442_17340 PF01926 50S ribosome-binding GTPase AM442_17355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM442_17355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM442_17360 PF00892 EamA-like transporter family AM442_17365 PF08212 Lipocalin-like domain AM442_17370 PF00271 Helicase conserved C-terminal domain AM442_17370 PF02151 UvrB/uvrC motif AM442_17370 PF04851 Type III restriction enzyme, res subunit AM442_17370 PF12344 Ultra-violet resistance protein B AM442_17380 PF00990 GGDEF domain AM442_17380 PF13188 PAS domain AM442_17380 PF13426 PAS domain AM442_17390 PF00155 Aminotransferase class I and II AM442_17395 PF04828 Glutathione-dependent formaldehyde-activating enzyme AM442_17400 PF03061 Thioesterase superfamily AM442_17420 PF00106 short chain dehydrogenase AM442_17425 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AM442_17430 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM442_17435 PF02565 Recombination protein O C terminal AM442_17435 PF11967 Recombination protein O N terminal AM442_17445 PF01926 50S ribosome-binding GTPase AM442_17445 PF07650 KH domain AM442_17450 PF00035 Double-stranded RNA binding motif AM442_17450 PF14622 Ribonuclease-III-like AM442_17455 PF16137 AM442_17455 AM442_17460 PF00717 Peptidase S24-like AM442_17460 PF10502 Signal peptidase, peptidase S26 AM442_17465 PF00009 Elongation factor Tu GTP binding domain AM442_17465 PF00679 Elongation factor G C-terminus AM442_17465 PF03144 Elongation factor Tu domain 2 AM442_17465 PF06421 GTP-binding protein LepA C-terminus AM442_17470 PF13279 Thioesterase-like superfamily AM442_17475 PF13180 PDZ domain AM442_17475 PF13365 Trypsin-like peptidase domain AM442_17480 PF00890 FAD binding domain AM442_17480 PF02910 Fumarate reductase flavoprotein C-term AM442_17485 PF03061 Thioesterase superfamily AM442_17490 PF02223 Thymidylate kinase AM442_17495 PF02618 YceG-like family AM442_17500 PF01063 Aminotransferase class IV AM442_17505 PF13531 Bacterial extracellular solute-binding protein AM442_17510 PF06821 Serine hydrolase AM442_17515 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17520 PF00528 Binding-protein-dependent transport system inner membrane component AM442_17525 PF00005 ABC transporter AM442_17525 PF12857 AM442_17525 AM442_17530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_17530 PF03466 LysR substrate binding domain AM442_17540 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_17540 PF14602 Hexapeptide repeat of succinyl-transferase AM442_17540 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM442_17545 PF04055 Radical SAM superfamily AM442_17545 PF13394 4Fe-4S single cluster domain AM442_17550 PF06508 Queuosine biosynthesis protein QueC AM442_17560 PF01902 ATP-binding region AM442_17565 PF00578 AhpC/TSA family AM442_17570 PF00188 Cysteine-rich secretory protein family AM442_17575 PF01467 Cytidylyltransferase AM442_17580 PF00378 Enoyl-CoA hydratase/isomerase family AM442_17590 PF07690 Major Facilitator Superfamily AM442_17595 PF02769 AIR synthase related protein, C-terminal domain AM442_17595 PF13507 CobB/CobQ-like glutamine amidotransferase domain AM442_17600 PF01966 HD domain AM442_17605 PF01330 RuvA N terminal domain AM442_17605 PF07499 RuvA, C-terminal domain AM442_17605 PF14520 Helix-hairpin-helix domain AM442_17610 PF05491 Holliday junction DNA helicase ruvB C-terminus AM442_17610 PF05496 Holliday junction DNA helicase ruvB N-terminus AM442_17615 PF01546 Peptidase family M20/M25/M40 AM442_17615 PF07687 Peptidase dimerisation domain AM442_17620 PF03061 Thioesterase superfamily AM442_17625 PF01618 AM442_17625 AM442_17630 PF02472 Biopolymer transport protein ExbD/TolR AM442_17635 PF13103 TonB C terminal AM442_17640 PF04052 TolB amino-terminal domain AM442_17640 PF07676 WD40-like Beta Propeller Repeat AM442_17645 PF00691 OmpA family AM442_17655 PF00316 Fructose-1-6-bisphosphatase AM442_17660 PF00588 SpoU rRNA Methylase family AM442_17665 PF04542 Sigma-70 region 2 AM442_17665 PF08281 Sigma-70, region 4 AM442_17675 PF11304 AM442_17675 AM442_17690 PF00308 Bacterial dnaA protein AM442_17695 PF01594 AM442_17695 AM442_17700 PF00586 AIR synthase related protein, N-terminal domain AM442_17700 PF02769 AIR synthase related protein, C-terminal domain AM442_17705 PF00551 Formyl transferase AM442_17710 PF12697 Alpha/beta hydrolase family AM442_17715 PF01343 Peptidase family S49 AM442_17720 PF03279 AM442_17720 AM442_17725 PF00753 Metallo-beta-lactamase superfamily AM442_17725 PF03772 AM442_17725 AM442_17725 PF13567 AM442_17725 AM442_17730 PF00005 ABC transporter AM442_17735 PF02687 AM442_17735 AM442_17735 PF12704 MacB-like periplasmic core domain AM442_17740 PF00892 EamA-like transporter family AM442_17745 PF02639 AM442_17745 AM442_17755 PF00266 Aminotransferase class-V AM442_17760 PF02321 Outer membrane efflux protein AM442_17765 PF16576 AM442_17765 AM442_17770 PF12698 ABC-2 family transporter protein AM442_17775 PF12698 ABC-2 family transporter protein AM442_17780 PF04794 YdjC-like protein AM442_17800 PF04138 AM442_17800 AM442_17805 PF13231 AM442_17805 AM442_17810 PF00521 DNA gyrase/topoisomerase IV, subunit A AM442_17810 PF03989 DNA gyrase C-terminal domain, beta-propeller AM442_17815 PF00766 Electron transfer flavoprotein FAD-binding domain AM442_17815 PF01012 Electron transfer flavoprotein domain AM442_17820 PF01012 Electron transfer flavoprotein domain AM442_17825 PF00589 Phage integrase family AM442_17825 PF02899 Phage integrase, N-terminal SAM-like domain AM442_17830 PF01810 AM442_17830 AM442_17835 PF01678 Diaminopimelate epimerase AM442_17840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM442_17840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM442_17850 PF00324 Amino acid permease AM442_17855 PF06745 KaiC AM442_17855 PF13541 Subunit ChlI of Mg-chelatase AM442_17860 PF04280 Tim44-like domain AM442_17865 PF00152 tRNA synthetases class II (D, K and N) AM442_17870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM442_17870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM442_17870 PF11890 Domain of unknown function (DUF3410) AM442_17875 PF06803 AM442_17875 AM442_17880 PF02634 FdhD/NarQ family AM442_17885 PF00384 Molybdopterin oxidoreductase AM442_17885 PF01568 Molydopterin dinucleotide binding domain AM442_17890 PF02595 Glycerate kinase family AM442_17895 PF00440 Bacterial regulatory proteins, tetR family AM442_17900 PF00106 short chain dehydrogenase AM442_17905 PF00881 Nitroreductase family AM442_17910 PF00440 Bacterial regulatory proteins, tetR family AM442_17915 PF10118 AM442_17915 AM442_17920 PF00440 Bacterial regulatory proteins, tetR family AM442_17935 PF11042 AM442_17935 AM442_17940 PF06877 Regulator of ribonuclease activity B AM442_17955 PF09857 AM442_17955 AM442_17960 PF13527 Acetyltransferase (GNAT) domain AM442_17965 PF00501 AMP-binding enzyme AM442_17965 PF00550 Phosphopantetheine attachment site AM442_17965 PF13193 AMP-binding enzyme C-terminal domain AM442_17975 PF14534 Domain of unknown function (DUF4440) AM442_17985 PF01272 Transcription elongation factor, GreA/GreB, C-term AM442_17985 PF03449 Transcription elongation factor, N-terminal AM442_17990 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM442_17990 PF01464 Transglycosylase SLT domain AM442_17995 PF02036 SCP-2 sterol transfer family AM442_18000 PF01171 PP-loop family AM442_18010 PF01464 Transglycosylase SLT domain AM442_18015 PF01435 Peptidase family M48 AM442_18020 PF13430 AM442_18020 AM442_18025 PF00873 AcrB/AcrD/AcrF family AM442_18030 PF03009 Glycerophosphoryl diester phosphodiesterase family AM442_18035 PF00753 Metallo-beta-lactamase superfamily AM442_18040 PF01219 Prokaryotic diacylglycerol kinase AM442_18045 PF00118 TCP-1/cpn60 chaperonin family AM442_18050 PF00166 Chaperonin 10 Kd subunit AM442_18055 PF12245 Bacterial Ig-like domain (group 3) AM442_18065 PF00149 Calcineurin-like phosphoesterase AM442_18070 PF00781 Diacylglycerol kinase catalytic domain AM442_18075 PF00821 Phosphoenolpyruvate carboxykinase AM442_18075 PF17297 AM442_18075 AM442_18080 PF01266 FAD dependent oxidoreductase AM442_18080 PF16901 AM442_18080 AM442_18085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM442_18085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM442_18090 PF00083 Sugar (and other) transporter AM442_18100 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AM442_18105 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM442_18105 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM442_18120 PF09423 PhoD-like phosphatase AM442_18120 PF16655 AM442_18120 AM442_18140 PF00809 Pterin binding enzyme AM442_18145 PF00004 ATPase family associated with various cellular activities (AAA) AM442_18145 PF01434 Peptidase family M41 AM442_18145 PF06480 FtsH Extracellular AM442_18150 PF01728 FtsJ-like methyltransferase AM442_18155 PF01985 CRS1 / YhbY (CRM) domain AM442_18175 PF00117 Glutamine amidotransferase class-I AM442_18175 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM442_18180 PF02142 MGS-like domain AM442_18180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM442_18180 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM442_18185 PF01272 Transcription elongation factor, GreA/GreB, C-term AM442_18185 PF03449 Transcription elongation factor, N-terminal AM442_18190 PF00132 Bacterial transferase hexapeptide (six repeats) AM442_18195 PF00582 Universal stress protein family AM442_18200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM442_18210 PF09587 Bacterial capsule synthesis protein PGA_cap AM442_18225 PF00999 Sodium/hydrogen exchanger family AM442_18230 PF04228 AM442_18230 AM442_18235 PF05661 AM442_18235 AM442_18240 PF00579 tRNA synthetases class I (W and Y) AM442_18245 PF00549 CoA-ligase AM442_18245 PF02629 CoA binding domain AM442_18250 PF00549 CoA-ligase AM442_18250 PF08442 ATP-grasp domain AM442_18255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM442_18255 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM442_18260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM442_18260 PF00364 Biotin-requiring enzyme AM442_18260 PF02817 e3 binding domain AM442_18265 PF00676 Dehydrogenase E1 component AM442_18265 PF02779 Transketolase, pyrimidine binding domain AM442_18265 PF16078 AM442_18265 AM442_18265 PF16870 AM442_18265 AM442_18280 PF13085 2Fe-2S iron-sulfur cluster binding domain AM442_18280 PF13534 4Fe-4S dicluster domain AM442_18285 PF00890 FAD binding domain AM442_18285 PF02910 Fumarate reductase flavoprotein C-term AM442_18290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM442_18295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM442_18300 PF00285 Citrate synthase AM442_18305 PF06945 AM442_18305 AM442_18310 PF00581 Rhodanese-like domain AM442_18315 PF03695 Uncharacterised protein family (UPF0149) AM442_18325 PF00140 Sigma-70 factor, region 1 AM442_18325 PF03979 Sigma-70 factor, region 1 AM442_18325 PF04539 Sigma-70 region 3 AM442_18325 PF04542 Sigma-70 region 2 AM442_18325 PF04545 Sigma-70, region 4 AM442_18325 PF04546 Sigma-70, non-essential region AM442_18330 PF04359 Protein of unknown function (DUF493) AM442_18335 PF03099 Biotin/lipoate A/B protein ligase family AM442_18345 PF00465 Iron-containing alcohol dehydrogenase AM442_18365 PF12724 Flavodoxin domain AM442_18370 PF01638 HxlR-like helix-turn-helix AM442_18375 PF00588 SpoU rRNA Methylase family AM442_18380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM442_18380 PF10414 Sirohaem synthase dimerisation region AM442_18380 PF13241 Putative NAD(P)-binding AM442_18385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM442_18385 PF02403 Seryl-tRNA synthetase N-terminal domain AM442_18390 PF11738 Protein of unknown function (DUF3298) AM442_18395 PF03548 Outer membrane lipoprotein carrier protein LolA AM442_18400 PF01016 Ribosomal L27 protein AM442_18405 PF00829 Ribosomal prokaryotic L21 protein AM442_18415 PF00348 Polyprenyl synthetase AM442_18420 PF10136 AM442_18420 AM442_18425 PF01569 PAP2 superfamily AM442_18430 PF00529 HlyD family secretion protein AM442_18430 PF16576 AM442_18430 AM442_18435 PF00873 AcrB/AcrD/AcrF family AM442_18440 PF02321 Outer membrane efflux protein AM442_18445 PF01906 Putative heavy-metal-binding AM442_18450 PF01906 Putative heavy-metal-binding AM442_18455 PF13577 SnoaL-like domain AM442_18460 PF00106 short chain dehydrogenase AM442_18470 PF00133 tRNA synthetases class I (I, L, M and V) AM442_18470 PF08264 Anticodon-binding domain of tRNA AM442_18470 PF10458 Valyl tRNA synthetase tRNA binding arm AM442_18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM442_18490 PF03466 LysR substrate binding domain AM442_18500 PF00909 Ammonium Transporter Family AM442_18510 PF01569 PAP2 superfamily AM442_18515 PF00512 His Kinase A (phospho-acceptor) domain AM442_18515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_18520 PF00072 Response regulator receiver domain AM442_18520 PF00486 Transcriptional regulatory protein, C terminal AM442_18525 PF00884 Sulfatase AM442_18525 PF08019 AM442_18525 AM442_18530 PF02530 AM442_18530 AM442_18550 PF13000 AM442_18550 AM442_18555 PF01553 Acyltransferase AM442_18560 PF01734 Patatin-like phospholipase AM442_18565 PF01957 NfeD-like C-terminal, partner-binding AM442_18570 PF01145 SPFH domain / Band 7 family AM442_18575 PF04237 YjbR AM442_18580 PF00348 Polyprenyl synthetase AM442_18585 PF04303 PrpF protein AM442_18590 PF00324 Amino acid permease AM442_18600 PF01965 DJ-1/PfpI family AM442_18605 PF00107 Zinc-binding dehydrogenase AM442_18605 PF08240 Alcohol dehydrogenase GroES-like domain AM442_18610 PF06719 AM442_18610 AM442_18610 PF12833 Helix-turn-helix domain AM442_18615 PF02673 AM442_18615 AM442_18620 PF08223 PaaX-like protein C-terminal domain AM442_18625 PF00487 AM442_18625 AM442_18630 PF12625 AM442_18630 AM442_18630 PF12833 Helix-turn-helix domain AM442_18635 PF02525 Flavodoxin-like fold AM442_18640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM442_18645 PF12710 haloacid dehalogenase-like hydrolase AM442_18650 PF01507 Phosphoadenosine phosphosulfate reductase family AM442_18655 PF03007 AM442_18655 AM442_18655 PF06974 AM442_18655 AM442_18665 PF00575 S1 RNA binding domain AM442_18665 PF10150 Ribonuclease E/G family AM442_18670 PF02545 Maf-like protein AM442_18675 PF04093 AM442_18675 AM442_18680 PF04085 rod shape-determining protein MreC AM442_18685 PF06723 MreB/Mbl protein AM442_18690 PF02686 Glu-tRNAGln amidotransferase C subunit AM442_18695 PF01425 Amidase AM442_18700 PF02637 GatB domain AM442_18700 PF02934 GatB/GatE catalytic domain AM442_18705 PF01965 DJ-1/PfpI family AM442_18715 PF06674 AM442_18715 AM442_18720 PF16142 AM442_18720 AM442_18725 PF01431 Peptidase family M13 AM442_18725 PF05649 Peptidase family M13 AM442_18730 PF05992 AM442_18730 AM442_18735 PF00291 Pyridoxal-phosphate dependent enzyme AM442_18740 PF01734 Patatin-like phospholipase AM442_18745 PF01235 AM442_18745 AM442_18760 PF00881 Nitroreductase family AM442_18765 PF07690 Major Facilitator Superfamily AM442_18770 PF12805 AM442_18770 AM442_18770 PF13515 AM442_18770 AM442_18775 PF14317 AM442_18775 AM442_18780 PF00175 Oxidoreductase NAD-binding domain AM442_18780 PF00258 Flavodoxin AM442_18780 PF03929 AM442_18780 AM442_18785 PF02698 DUF218 domain AM442_18820 PF03734 L,D-transpeptidase catalytic domain AM442_18825 PF04304 AM442_18825 AM442_18830 PF08907 AM442_18830 AM442_18835 PF08085 AM442_18835 AM442_18840 PF01546 Peptidase family M20/M25/M40 AM442_18840 PF07687 Peptidase dimerisation domain AM442_18850 PF00072 Response regulator receiver domain AM442_18850 PF01584 CheW-like domain AM442_18850 PF01627 Hpt domain AM442_18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_18855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM442_18860 PF01584 CheW-like domain AM442_18865 PF00072 Response regulator receiver domain AM442_18870 PF00072 Response regulator receiver domain AM442_18880 PF13437 HlyD family secretion protein AM442_18880 PF13533 Biotin-lipoyl like AM442_18885 PF00873 AcrB/AcrD/AcrF family AM442_18890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM442_18890 PF03129 Anticodon binding domain AM442_18890 PF04073 Aminoacyl-tRNA editing domain AM442_18895 PF07411 Domain of unknown function (DUF1508) AM442_18900 PF03831 PhnA protein AM442_18900 PF08274 PhnA Zinc-Ribbon AM442_18905 PF04343 AM442_18905 AM442_18910 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AM442_18915 PF01571 Aminomethyltransferase folate-binding domain AM442_18920 PF10411 Disulfide bond isomerase protein N-terminus AM442_18920 PF13098 Thioredoxin-like domain AM442_18925 PF08238 Sel1 repeat AM442_18930 PF03547 AM442_18930 AM442_18935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM442_18940 PF00593 TonB dependent receptor AM442_18940 PF07715 TonB-dependent Receptor Plug Domain AM442_18945 PF02245 Methylpurine-DNA glycosylase (MPG) AM442_18950 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM442_18950 PF06827 Zinc finger found in FPG and IleRS AM442_18950 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM442_18955 PF00639 PPIC-type PPIASE domain AM442_18960 PF06094 AIG2-like family AM442_18965 PF01741 Large-conductance mechanosensitive channel, MscL AM442_18970 PF00009 Elongation factor Tu GTP binding domain AM442_18970 PF00679 Elongation factor G C-terminus AM442_18970 PF03144 Elongation factor Tu domain 2 AM442_18975 PF00860 Permease family AM442_18980 PF05175 Methyltransferase small domain AM442_18980 PF08468 Methyltransferase small domain N-terminal AM442_18985 PF00324 Amino acid permease AM442_18990 PF01139 tRNA-splicing ligase RtcB AM442_18995 PF00691 OmpA family AM442_18995 PF13505 Outer membrane protein beta-barrel domain AM442_19000 PF12019 Type II transport protein GspH AM442_19005 PF00108 Thiolase, N-terminal domain AM442_19005 PF02803 Thiolase, C-terminal domain AM442_19010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM442_19015 PF00893 Small Multidrug Resistance protein AM442_19020 PF06073 AM442_19020 AM442_19025 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM442_19025 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM442_19030 PF01011 PQQ enzyme repeat AM442_19030 PF13360 PQQ-like domain AM442_19035 PF04966 Carbohydrate-selective porin, OprB family AM442_19040 PF02515 CoA-transferase family III AM442_19045 PF12625 AM442_19045 AM442_19045 PF12833 Helix-turn-helix domain AM442_19050 PF00108 Thiolase, N-terminal domain AM442_19050 PF02803 Thiolase, C-terminal domain AM442_19055 PF00378 Enoyl-CoA hydratase/isomerase family AM442_19055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM442_19055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM442_19065 PF01734 Patatin-like phospholipase AM442_19070 PF13673 Acetyltransferase (GNAT) domain AM442_19080 PF03006 AM442_19080 AM442_19085 PF00083 Sugar (and other) transporter AM442_19095 PF01043 SecA preprotein cross-linking domain AM442_19095 PF02810 SEC-C motif AM442_19095 PF07516 SecA Wing and Scaffold domain AM442_19095 PF07517 SecA DEAD-like domain AM442_19100 PF00578 AhpC/TSA family AM442_19100 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM442_19105 PF00753 Metallo-beta-lactamase superfamily AM442_19110 PF00782 Dual specificity phosphatase, catalytic domain AM442_19115 PF05036 Sporulation related domain AM442_19120 PF02875 Mur ligase family, glutamate ligase domain AM442_19120 PF08245 Mur ligase middle domain AM442_19125 PF01039 Carboxyl transferase domain AM442_19130 PF00290 Tryptophan synthase alpha chain AM442_19135 PF12625 AM442_19135 AM442_19135 PF12833 Helix-turn-helix domain AM442_19140 PF10118 AM442_19140 AM442_19145 PF10974 AM442_19145 AM442_19150 PF07566 Domain of Unknown Function (DUF1543) AM442_19155 PF00291 Pyridoxal-phosphate dependent enzyme AM442_19160 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM442_19165 PF00593 TonB dependent receptor AM442_19165 PF07715 TonB-dependent Receptor Plug Domain AM442_19170 PF01923 Cobalamin adenosyltransferase AM442_19175 PF03009 Glycerophosphoryl diester phosphodiesterase family AM442_19180 PF03724 META domain AM442_19185 PF00487 AM442_19185 AM442_19190 PF02696 AM442_19190 AM442_19195 PF00072 Response regulator receiver domain AM442_19195 PF00486 Transcriptional regulatory protein, C terminal AM442_19200 PF00512 His Kinase A (phospho-acceptor) domain AM442_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_19210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_19210 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_19210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_19210 PF12418 AM442_19210 AM442_19210 PF12806 AM442_19210 AM442_19215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM442_19215 PF02770 Acyl-CoA dehydrogenase, middle domain AM442_19215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM442_19215 PF12418 AM442_19215 AM442_19215 PF12806 AM442_19215 AM442_19220 PF06146 AM442_19220 AM442_19225 PF11776 Domain of unknown function (DUF3315) AM442_19235 PF13091 PLD-like domain AM442_19240 PF00593 TonB dependent receptor AM442_19240 PF07715 TonB-dependent Receptor Plug Domain AM442_19245 PF13803 AM442_19245 AM442_19250 PF00152 tRNA synthetases class II (D, K and N) AM442_19250 PF01336 OB-fold nucleic acid binding domain AM442_19250 PF02938 GAD domain AM442_19255 PF11380 AM442_19255 AM442_19255 PF17102 AM442_19255 AM442_19265 PF03275 UDP-galactopyranose mutase AM442_19265 PF13450 NAD(P)-binding Rossmann-like domain AM442_19285 PF01755 AM442_19285 AM442_19290 PF01755 AM442_19290 AM442_19300 PF00534 Glycosyl transferases group 1 AM442_19300 PF13439 Glycosyltransferase Family 4 AM442_19305 PF00535 Glycosyl transferase family 2 AM442_19310 PF01522 Polysaccharide deacetylase AM442_19315 PF13524 Glycosyl transferases group 1 AM442_19320 PF06258 AM442_19320 AM442_19325 PF01063 Aminotransferase class IV AM442_19330 PF03710 Glutamate-ammonia ligase adenylyltransferase AM442_19330 PF08335 GlnD PII-uridylyltransferase AM442_19335 PF00512 His Kinase A (phospho-acceptor) domain AM442_19335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM442_19350 PF13737 AM442_19350 AM442_19360 PF13737 AM442_19360 AM442_19375 PF02547 Queuosine biosynthesis protein AM442_19385 PF04011 LemA family AM442_19390 PF01702 Queuine tRNA-ribosyltransferase AM442_19395 PF02699 Preprotein translocase subunit AM442_19400 PF02355 Protein export membrane protein AM442_19400 PF07549 SecD/SecF GG Motif AM442_19400 PF13721 SecD export protein N-terminal TM region AM442_19405 PF02355 Protein export membrane protein AM442_19405 PF07549 SecD/SecF GG Motif AM442_19440 PF05973 AM442_19440 AM442_19445 PF13744 Helix-turn-helix domain AM442_19505 PF05816 AM442_19505 AM442_19525 PF02195 ParB-like nuclease domain AM442_19525 PF08535 KorB domain AM442_19530 PF13614 AAA domain AM442_19560 PF10979 AM442_19560 AM442_19585 PF00816 H-NS histone family AM442_19595 PF00905 Penicillin binding protein transpeptidase domain AM442_19605 PF00565 Staphylococcal nuclease homologue AM442_19640 PF06666 AM442_19640 AM442_19645 PF06414 Zeta toxin AM442_19655 PF03090 AM442_19655 AM442_19655 PF08708 Primase C terminal 1 (PriCT-1) AM442_19675 PF00817 impB/mucB/samB family AM442_19675 PF11799 impB/mucB/samB family C-terminal domain AM442_19675 PF13438 AM442_19675 AM442_19685 PF01464 Transglycosylase SLT domain AM442_19690 PF07916 AM442_19690 AM442_19695 PF06122 AM442_19695 AM442_19705 PF13728 F plasmid transfer operon protein AM442_19710 PF06986 AM442_19710 AM442_19715 PF09673 AM442_19715 AM442_19720 PF06834 AM442_19720 AM442_19730 PF10502 Signal peptidase, peptidase S26 AM442_19740 PF11130 AM442_19740 AM442_19740 PF12846 AAA-like domain AM442_19745 PF09676 AM442_19745 AM442_19755 PF10411 Disulfide bond isomerase protein N-terminus AM442_19755 PF13098 Thioredoxin-like domain AM442_19760 PF03743 Bacterial conjugation TrbI-like protein AM442_19765 PF06586 AM442_19765 AM442_19770 PF05309 AM442_19770 AM442_19775 PF07178 AM442_19775 AM442_19790 PF01464 Transglycosylase SLT domain AM442_19805 PF00239 Resolvase, N terminal domain AM442_19825 PF00665 Integrase core domain AM442_19825 PF13936 Helix-turn-helix domain AM442_19860 PF08751 TrwC relaxase AM442_19860 PF13604 AAA domain AM442_19865 PF10412 Type IV secretion-system coupling protein DNA-binding domain