locus-tag class description AM457_00010 PF13533 Biotin-lipoyl like AM457_00030 PF00535 Glycosyl transferase family 2 AM457_00045 PF03989 DNA gyrase C-terminal domain, beta-propeller AM457_00045 PF00521 DNA gyrase/topoisomerase IV, subunit A AM457_00050 PF01012 Electron transfer flavoprotein domain AM457_00050 PF00766 Electron transfer flavoprotein FAD-binding domain AM457_00055 PF01012 Electron transfer flavoprotein domain AM457_00060 PF02899 Phage integrase, N-terminal SAM-like domain AM457_00060 PF00589 Phage integrase family AM457_00065 PF01810 LysE type translocator AM457_00075 PF01678 Diaminopimelate epimerase AM457_00080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM457_00080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM457_00090 PF00324 Amino acid permease AM457_00095 PF18073 Rubredoxin metal binding domain AM457_00105 PF00152 tRNA synthetases class II (D, K and N) AM457_00110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM457_00110 PF11890 Domain of unknown function (DUF3410) AM457_00110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM457_00115 PF06803 Protein of unknown function (DUF1232) AM457_00120 PF02634 FdhD/NarQ family AM457_00125 PF00384 Molybdopterin oxidoreductase AM457_00130 PF02595 Glycerate kinase family AM457_00145 PF00881 Nitroreductase family AM457_00170 PF00550 Phosphopantetheine attachment site AM457_00170 PF13193 AMP-binding enzyme C-terminal domain AM457_00170 PF00501 AMP-binding enzyme AM457_00170 PF00668 Condensation domain AM457_00170 PF00975 Thioesterase domain AM457_00185 PF03449 Transcription elongation factor, N-terminal AM457_00185 PF01272 Transcription elongation factor, GreA/GreB, C-term AM457_00190 PF01464 Transglycosylase SLT domain AM457_00190 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM457_00200 PF01171 PP-loop family AM457_00210 PF01464 Transglycosylase SLT domain AM457_00215 PF01435 Peptidase family M48 AM457_00225 PF00873 AcrB/AcrD/AcrF family AM457_00230 PF03009 Glycerophosphoryl diester phosphodiesterase family AM457_00235 PF00753 Metallo-beta-lactamase superfamily AM457_00240 PF01219 Prokaryotic diacylglycerol kinase AM457_00245 PF00118 TCP-1/cpn60 chaperonin family AM457_00250 PF00166 Chaperonin 10 Kd subunit AM457_00260 PF00149 Calcineurin-like phosphoesterase AM457_00265 PF00781 Diacylglycerol kinase catalytic domain AM457_00270 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AM457_00270 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AM457_00275 PF01266 FAD dependent oxidoreductase AM457_00275 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AM457_00280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM457_00280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM457_00285 PF00083 Sugar (and other) transporter AM457_00300 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM457_00300 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM457_00315 PF16655 PhoD-like phosphatase, N-terminal domain AM457_00315 PF09423 PhoD-like phosphatase AM457_00335 PF00809 Pterin binding enzyme AM457_00340 PF06480 FtsH Extracellular AM457_00340 PF01434 Peptidase family M41 AM457_00340 PF17862 AAA+ lid domain AM457_00340 PF00004 ATPase family associated with various cellular activities (AAA) AM457_00345 PF01728 FtsJ-like methyltransferase AM457_00350 PF01985 CRS1 / YhbY (CRM) domain AM457_00365 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM457_00365 PF00117 Glutamine amidotransferase class-I AM457_00370 PF02142 MGS-like domain AM457_00370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM457_00370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM457_00375 PF01272 Transcription elongation factor, GreA/GreB, C-term AM457_00375 PF03449 Transcription elongation factor, N-terminal AM457_00380 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_00385 PF00582 Universal stress protein family AM457_00390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM457_00400 PF09587 Bacterial capsule synthesis protein PGA_cap AM457_00415 PF00999 Sodium/hydrogen exchanger family AM457_00420 PF04228 Putative neutral zinc metallopeptidase AM457_00425 PF05661 Protein of unknown function (DUF808) AM457_00430 PF00579 tRNA synthetases class I (W and Y) AM457_00445 PF00549 CoA-ligase AM457_00445 PF02629 CoA binding domain AM457_00450 PF00549 CoA-ligase AM457_00450 PF08442 ATP-grasp domain AM457_00455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_00455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM457_00460 PF00364 Biotin-requiring enzyme AM457_00460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM457_00460 PF02817 e3 binding domain AM457_00465 PF16870 2-oxoglutarate dehydrogenase C-terminal AM457_00465 PF02779 Transketolase, pyrimidine binding domain AM457_00465 PF00676 Dehydrogenase E1 component AM457_00465 PF16078 2-oxoglutarate dehydrogenase N-terminus AM457_00480 PF13085 2Fe-2S iron-sulfur cluster binding domain AM457_00485 PF00890 FAD binding domain AM457_00485 PF02910 Fumarate reductase flavoprotein C-term AM457_00490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM457_00495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM457_00500 PF00285 Citrate synthase, C-terminal domain AM457_00525 PF04539 Sigma-70 region 3 AM457_00525 PF03979 Sigma-70 factor, region 1.1 AM457_00525 PF00140 Sigma-70 factor, region 1.2 AM457_00525 PF04542 Sigma-70 region 2 AM457_00525 PF04545 Sigma-70, region 4 AM457_00525 PF04546 Sigma-70, non-essential region AM457_00530 PF04359 Protein of unknown function (DUF493) AM457_00535 PF03099 Biotin/lipoate A/B protein ligase family AM457_00545 PF00465 Iron-containing alcohol dehydrogenase AM457_00550 PF13520 Amino acid permease AM457_00555 PF03358 NADPH-dependent FMN reductase AM457_00560 PF01638 HxlR-like helix-turn-helix AM457_00565 PF00588 SpoU rRNA Methylase family AM457_00570 PF14824 Sirohaem biosynthesis protein central AM457_00570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM457_00570 PF10414 Sirohaem synthase dimerisation region AM457_00575 PF02403 Seryl-tRNA synthetase N-terminal domain AM457_00575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM457_00585 PF03548 Outer membrane lipoprotein carrier protein LolA AM457_00590 PF01016 Ribosomal L27 protein AM457_00595 PF00829 Ribosomal prokaryotic L21 protein AM457_00605 PF00348 Polyprenyl synthetase AM457_00615 PF01569 PAP2 superfamily AM457_00620 PF00529 HlyD membrane-fusion protein of T1SS AM457_00620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_00625 PF00873 AcrB/AcrD/AcrF family AM457_00630 PF02321 Outer membrane efflux protein AM457_00635 PF01906 Putative heavy-metal-binding AM457_00640 PF01906 Putative heavy-metal-binding AM457_00660 PF10458 Valyl tRNA synthetase tRNA binding arm AM457_00660 PF08264 Anticodon-binding domain of tRNA AM457_00660 PF00133 tRNA synthetases class I (I, L, M and V) AM457_00680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_00680 PF03466 LysR substrate binding domain AM457_00690 PF00909 Ammonium Transporter Family AM457_00700 PF00512 His Kinase A (phospho-acceptor) domain AM457_00700 PF08521 Two-component sensor kinase N-terminal AM457_00700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_00705 PF00072 Response regulator receiver domain AM457_00705 PF00486 Transcriptional regulatory protein, C terminal AM457_00710 PF00884 Sulfatase AM457_00710 PF08019 Phosphoethanolamine transferase EptA/EptB AM457_00730 PF01734 Patatin-like phospholipase AM457_00740 PF01145 SPFH domain / Band 7 family AM457_00745 PF04237 YjbR AM457_00750 PF00348 Polyprenyl synthetase AM457_00755 PF04303 PrpF protein AM457_00760 PF00324 Amino acid permease AM457_00770 PF01965 DJ-1/PfpI family AM457_00775 PF00550 Phosphopantetheine attachment site AM457_00775 PF08659 KR domain AM457_00775 PF14765 Polyketide synthase dehydratase AM457_00775 PF00109 Beta-ketoacyl synthase, N-terminal domain AM457_00775 PF16197 Ketoacyl-synthetase C-terminal extension AM457_00775 PF09277 Erythronolide synthase, docking AM457_00775 PF08990 Erythronolide synthase docking AM457_00775 PF08240 Alcohol dehydrogenase GroES-like domain AM457_00775 PF02801 Beta-ketoacyl synthase, C-terminal domain AM457_00775 PF00698 Acyl transferase domain AM457_00780 PF06719 AraC-type transcriptional regulator N-terminus AM457_00780 PF12833 Helix-turn-helix domain AM457_00785 PF02673 Bacitracin resistance protein BacA AM457_00805 PF02525 Flavodoxin-like fold AM457_00820 PF01507 Phosphoadenosine phosphosulfate reductase family AM457_00825 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AM457_00825 PF06974 Protein of unknown function (DUF1298) AM457_00835 PF00575 S1 RNA binding domain AM457_00835 PF10150 Ribonuclease E/G family AM457_00840 PF02545 Maf-like protein AM457_00845 PF04093 rod shape-determining protein MreD AM457_00850 PF04085 rod shape-determining protein MreC AM457_00860 PF02686 Glu-tRNAGln amidotransferase C subunit AM457_00865 PF01425 Amidase AM457_00870 PF02637 GatB domain AM457_00870 PF02934 GatB/GatE catalytic domain AM457_00895 PF01431 Peptidase family M13 AM457_00895 PF05649 Peptidase family M13 AM457_00900 PF05992 SbmA/BacA-like family AM457_00905 PF13291 ACT domain AM457_00905 PF00291 Pyridoxal-phosphate dependent enzyme AM457_00910 PF01734 Patatin-like phospholipase AM457_00915 PF01235 Sodium:alanine symporter family AM457_00930 PF00881 Nitroreductase family AM457_00935 PF07690 Major Facilitator Superfamily AM457_00940 PF12805 FUSC-like inner membrane protein yccS AM457_00950 PF00667 FAD binding domain AM457_00950 PF00175 Oxidoreductase NAD-binding domain AM457_00950 PF00258 Flavodoxin AM457_00990 PF17969 L,D-transpeptidase C-terminal domain AM457_00990 PF03734 L,D-transpeptidase catalytic domain AM457_00995 PF04304 Protein of unknown function (DUF454) AM457_01005 PF08085 Entericidin EcnA/B family AM457_01010 PF01546 Peptidase family M20/M25/M40 AM457_01010 PF07687 Peptidase dimerisation domain AM457_01020 PF06969 HemN C-terminal domain AM457_01020 PF04055 Radical SAM superfamily AM457_01030 PF01584 CheW-like domain AM457_01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_01030 PF01627 Hpt domain AM457_01030 PF00072 Response regulator receiver domain AM457_01035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM457_01035 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM457_01040 PF01584 CheW-like domain AM457_01045 PF00072 Response regulator receiver domain AM457_01050 PF00072 Response regulator receiver domain AM457_01065 PF00873 AcrB/AcrD/AcrF family AM457_01070 PF04073 Aminoacyl-tRNA editing domain AM457_01070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM457_01070 PF03129 Anticodon binding domain AM457_01075 PF07411 Domain of unknown function (DUF1508) AM457_01080 PF08274 PhnA Zinc-Ribbon AM457_01080 PF03831 PhnA domain AM457_01085 PF04343 Protein of unknown function, DUF488 AM457_01095 PF01571 Aminomethyltransferase folate-binding domain AM457_01100 PF13098 Thioredoxin-like domain AM457_01100 PF10411 Disulfide bond isomerase protein N-terminus AM457_01110 PF03547 Membrane transport protein AM457_01115 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM457_01120 PF00593 TonB dependent receptor AM457_01120 PF07715 TonB-dependent Receptor Plug Domain AM457_01140 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM457_01140 PF06827 Zinc finger found in FPG and IleRS AM457_01140 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM457_01155 PF01741 Large-conductance mechanosensitive channel, MscL AM457_01165 PF00860 Permease family AM457_01170 PF05175 Methyltransferase small domain AM457_01170 PF08468 Methyltransferase small domain N-terminal AM457_01175 PF00324 Amino acid permease AM457_01180 PF01139 tRNA-splicing ligase RtcB AM457_01190 PF00691 OmpA family AM457_01190 PF13505 Outer membrane protein beta-barrel domain AM457_01200 PF02803 Thiolase, C-terminal domain AM457_01200 PF00108 Thiolase, N-terminal domain AM457_01210 PF00893 Small Multidrug Resistance protein AM457_01220 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM457_01220 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM457_01225 PF01011 PQQ enzyme repeat AM457_01230 PF04966 Carbohydrate-selective porin, OprB family AM457_01235 PF02515 CoA-transferase family III AM457_01240 PF02311 AraC-like ligand binding domain AM457_01240 PF12833 Helix-turn-helix domain AM457_01245 PF02803 Thiolase, C-terminal domain AM457_01245 PF00108 Thiolase, N-terminal domain AM457_01250 PF00378 Enoyl-CoA hydratase/isomerase AM457_01250 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM457_01250 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM457_01275 PF03006 Haemolysin-III related AM457_01280 PF07690 Major Facilitator Superfamily AM457_01280 PF00083 Sugar (and other) transporter AM457_01290 PF01043 SecA preprotein cross-linking domain AM457_01290 PF02810 SEC-C motif AM457_01290 PF07516 SecA Wing and Scaffold domain AM457_01290 PF07517 SecA DEAD-like domain AM457_01295 PF00578 AhpC/TSA family AM457_01295 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM457_01300 PF00753 Metallo-beta-lactamase superfamily AM457_01315 PF02875 Mur ligase family, glutamate ligase domain AM457_01315 PF08245 Mur ligase middle domain AM457_01320 PF01039 Carboxyl transferase domain AM457_01325 PF00290 Tryptophan synthase alpha chain AM457_01350 PF00291 Pyridoxal-phosphate dependent enzyme AM457_01355 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM457_01360 PF07715 TonB-dependent Receptor Plug Domain AM457_01360 PF00593 TonB dependent receptor AM457_01365 PF01923 Cobalamin adenosyltransferase AM457_01385 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM457_01390 PF00486 Transcriptional regulatory protein, C terminal AM457_01390 PF00072 Response regulator receiver domain AM457_01395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_01395 PF00672 HAMP domain AM457_01395 PF00512 His Kinase A (phospho-acceptor) domain AM457_01405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_01405 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM457_01405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_01405 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_01410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_01410 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_01410 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM457_01410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_01415 PF06146 Phosphate-starvation-inducible E AM457_01445 PF07715 TonB-dependent Receptor Plug Domain AM457_01445 PF00593 TonB dependent receptor AM457_01455 PF00152 tRNA synthetases class II (D, K and N) AM457_01455 PF02938 GAD domain AM457_01455 PF01336 OB-fold nucleic acid binding domain AM457_01460 PF17101 Stealth protein CR1, conserved region 1 AM457_01460 PF11380 Stealth protein CR2, conserved region 2 AM457_01460 PF17102 Stealth protein CR3, conserved region 3 AM457_01485 PF00534 Glycosyl transferases group 1 AM457_01485 PF13439 Glycosyltransferase Family 4 AM457_01490 PF00535 Glycosyl transferase family 2 AM457_01495 PF01522 Polysaccharide deacetylase AM457_01510 PF01063 Amino-transferase class IV AM457_01515 PF08335 GlnD PII-uridylyltransferase AM457_01515 PF03710 Glutamate-ammonia ligase adenylyltransferase AM457_01520 PF00512 His Kinase A (phospho-acceptor) domain AM457_01520 PF07689 KaiB domain AM457_01520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_01530 PF02547 Queuosine biosynthesis protein AM457_01545 PF01702 Queuine tRNA-ribosyltransferase AM457_01550 PF02699 Preprotein translocase subunit AM457_01555 PF07549 SecD/SecF GG Motif AM457_01555 PF13721 SecD export protein N-terminal TM region AM457_01555 PF02355 Protein export membrane protein AM457_01560 PF07549 SecD/SecF GG Motif AM457_01560 PF02355 Protein export membrane protein AM457_01565 PF02441 Flavoprotein AM457_01565 PF04127 DNA / pantothenate metabolism flavoprotein AM457_01570 PF04002 RadC-like JAB domain AM457_01575 PF01062 Bestrophin, RFP-TM, chloride channel AM457_01580 PF02811 PHP domain AM457_01585 PF04279 Intracellular septation protein A AM457_01590 PF03795 YCII-related domain AM457_01600 PF01266 FAD dependent oxidoreductase AM457_01600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM457_01610 PF04461 Protein of unknown function (DUF520) AM457_01620 PF03061 Thioesterase superfamily AM457_01625 PF00085 Thioredoxin AM457_01630 PF00561 alpha/beta hydrolase fold AM457_01635 PF04273 Putative phosphatase (DUF442) AM457_01635 PF00753 Metallo-beta-lactamase superfamily AM457_01645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_01645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM457_01690 PF00990 Diguanylate cyclase, GGDEF domain AM457_01690 PF17152 Periplasmic sensor domain AM457_01695 PF01389 OmpA-like transmembrane domain AM457_01695 PF00691 OmpA family AM457_01700 PF00149 Calcineurin-like phosphoesterase AM457_01700 PF10518 TAT (twin-arginine translocation) pathway signal sequence AM457_01705 PF13091 PLD-like domain AM457_01715 PF13167 GTP-binding GTPase N-terminal AM457_01715 PF01926 50S ribosome-binding GTPase AM457_01715 PF16360 GTP-binding GTPase Middle Region AM457_01735 PF00149 Calcineurin-like phosphoesterase AM457_01740 PF00398 Ribosomal RNA adenine dimethylase AM457_01745 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM457_01750 PF00572 Ribosomal protein L13 AM457_01755 PF00380 Ribosomal protein S9/S16 AM457_01760 PF00043 Glutathione S-transferase, C-terminal domain AM457_01760 PF13417 Glutathione S-transferase, N-terminal domain AM457_01765 PF04386 Stringent starvation protein B AM457_01775 PF00289 Biotin carboxylase, N-terminal domain AM457_01775 PF00364 Biotin-requiring enzyme AM457_01775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM457_01775 PF02785 Biotin carboxylase C-terminal domain AM457_01785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_01785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_01785 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_01790 PF01039 Carboxyl transferase domain AM457_01805 PF00440 Bacterial regulatory proteins, tetR family AM457_01805 PF17932 Tetracyclin repressor-like, C-terminal domain AM457_01810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_01810 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_01810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_01855 PF01066 CDP-alcohol phosphatidyltransferase AM457_01860 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AM457_01880 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM457_01880 PF00056 lactate/malate dehydrogenase, NAD binding domain AM457_01890 PF01464 Transglycosylase SLT domain AM457_01890 PF01551 Peptidase family M23 AM457_01890 PF10145 Phage-related minor tail protein AM457_01895 PF00919 Uncharacterized protein family UPF0004 AM457_01895 PF04055 Radical SAM superfamily AM457_01895 PF01938 TRAM domain AM457_01900 PF02562 PhoH-like protein AM457_01905 PF02130 Uncharacterized protein family UPF0054 AM457_01930 PF03358 NADPH-dependent FMN reductase AM457_01935 PF03631 Virulence factor BrkB AM457_01940 PF00892 EamA-like transporter family AM457_01945 PF12833 Helix-turn-helix domain AM457_01950 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM457_01995 PF00575 S1 RNA binding domain AM457_01995 PF17876 Cold shock domain AM457_01995 PF00773 RNB domain AM457_01995 PF08461 Ribonuclease R winged-helix domain AM457_01995 PF08206 Ribonuclease B OB domain AM457_02000 PF01432 Peptidase family M3 AM457_02005 PF09526 Probable metal-binding protein (DUF2387) AM457_02035 PF03937 Flavinator of succinate dehydrogenase AM457_02040 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_02040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_02040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_02045 PF00743 Flavin-binding monooxygenase-like AM457_02050 PF01196 Ribosomal protein L17 AM457_02055 PF01000 RNA polymerase Rpb3/RpoA insert domain AM457_02055 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM457_02055 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM457_02060 PF00163 Ribosomal protein S4/S9 N-terminal domain AM457_02060 PF01479 S4 domain AM457_02065 PF00411 Ribosomal protein S11 AM457_02070 PF00416 Ribosomal protein S13/S18 AM457_02075 PF00444 Ribosomal protein L36 AM457_02080 PF00344 SecY translocase AM457_02085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM457_02090 PF00327 Ribosomal protein L30p/L7e AM457_02095 PF00333 Ribosomal protein S5, N-terminal domain AM457_02095 PF03719 Ribosomal protein S5, C-terminal domain AM457_02100 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM457_02105 PF00347 Ribosomal protein L6 AM457_02110 PF00410 Ribosomal protein S8 AM457_02115 PF00253 Ribosomal protein S14p/S29e AM457_02120 PF00281 Ribosomal protein L5 AM457_02120 PF00673 ribosomal L5P family C-terminus AM457_02125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM457_02125 PF00467 KOW motif AM457_02130 PF00238 Ribosomal protein L14p/L23e AM457_02135 PF00366 Ribosomal protein S17 AM457_02140 PF00831 Ribosomal L29 protein AM457_02145 PF00252 Ribosomal protein L16p/L10e AM457_02150 PF00189 Ribosomal protein S3, C-terminal domain AM457_02150 PF07650 KH domain AM457_02155 PF00237 Ribosomal protein L22p/L17e AM457_02160 PF00203 Ribosomal protein S19 AM457_02165 PF03947 Ribosomal Proteins L2, C-terminal domain AM457_02165 PF00181 Ribosomal Proteins L2, RNA binding domain AM457_02170 PF00276 Ribosomal protein L23 AM457_02175 PF00573 Ribosomal protein L4/L1 family AM457_02180 PF00297 Ribosomal protein L3 AM457_02185 PF00338 Ribosomal protein S10p/S20e AM457_02190 PF00117 Glutamine amidotransferase class-I AM457_02195 PF01053 Cys/Met metabolism PLP-dependent enzyme AM457_02200 PF05872 Bacterial protein of unknown function (DUF853) AM457_02210 PF00042 Globin AM457_02210 PF00175 Oxidoreductase NAD-binding domain AM457_02210 PF00970 Oxidoreductase FAD-binding domain AM457_02215 PF02082 Transcriptional regulator AM457_02220 PF01926 50S ribosome-binding GTPase AM457_02230 PF00375 Sodium:dicarboxylate symporter family AM457_02240 PF01553 Acyltransferase AM457_02255 PF00270 DEAD/DEAH box helicase AM457_02255 PF00271 Helicase conserved C-terminal domain AM457_02255 PF17191 RecG wedge domain AM457_02260 PF00156 Phosphoribosyl transferase domain AM457_02265 PF00293 NUDIX domain AM457_02270 PF03641 Possible lysine decarboxylase AM457_02275 PF01544 CorA-like Mg2+ transporter protein AM457_02285 PF05494 MlaC protein AM457_02295 PF02405 Permease MlaE AM457_02300 PF00005 ABC transporter AM457_02305 PF00271 Helicase conserved C-terminal domain AM457_02305 PF12343 Cold shock protein DEAD box A AM457_02305 PF03880 DbpA RNA binding domain AM457_02305 PF00270 DEAD/DEAH box helicase AM457_02310 PF00459 Inositol monophosphatase family AM457_02315 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM457_02315 PF02780 Transketolase, C-terminal domain AM457_02315 PF02779 Transketolase, pyrimidine binding domain AM457_02320 PF00925 GTP cyclohydrolase II AM457_02325 PF01218 Coproporphyrinogen III oxidase AM457_02330 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AM457_02330 PF01488 Shikimate / quinate 5-dehydrogenase AM457_02330 PF08501 Shikimate dehydrogenase substrate binding domain AM457_02340 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_02340 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM457_02340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_02340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_02350 PF04024 PspC domain AM457_02355 PF00571 CBS domain AM457_02370 PF07690 Major Facilitator Superfamily AM457_02375 PF02091 Glycyl-tRNA synthetase alpha subunit AM457_02380 PF05746 DALR anticodon binding domain AM457_02380 PF02092 Glycyl-tRNA synthetase beta subunit AM457_02395 PF00892 EamA-like transporter family AM457_02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_02400 PF03466 LysR substrate binding domain AM457_02435 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM457_02440 PF04996 Succinylarginine dihydrolase AM457_02445 PF00171 Aldehyde dehydrogenase family AM457_02450 PF04958 Arginine N-succinyltransferase beta subunit AM457_02455 PF00202 Aminotransferase class-III AM457_02460 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM457_02460 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM457_02465 PF00324 Amino acid permease AM457_02495 PF13614 AAA domain AM457_02500 PF01594 AI-2E family transporter AM457_02505 PF00080 Copper/zinc superoxide dismutase (SODC) AM457_02510 PF12805 FUSC-like inner membrane protein yccS AM457_02515 PF07690 Major Facilitator Superfamily AM457_02525 PF02525 Flavodoxin-like fold AM457_02530 PF03992 Antibiotic biosynthesis monooxygenase AM457_02540 PF02913 FAD linked oxidases, C-terminal domain AM457_02540 PF01565 FAD binding domain AM457_02545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM457_02545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM457_02550 PF00892 EamA-like transporter family AM457_02555 PF00892 EamA-like transporter family AM457_02565 PF01925 Sulfite exporter TauE/SafE AM457_02570 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM457_02570 PF09157 Pseudouridine synthase II TruB, C-terminal AM457_02570 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM457_02575 PF03280 Proteobacterial lipase chaperone protein AM457_02580 PF00561 alpha/beta hydrolase fold AM457_02585 PF01245 Ribosomal protein L19 AM457_02590 PF01746 tRNA (Guanine-1)-methyltransferase AM457_02595 PF05239 PRC-barrel domain AM457_02595 PF01782 RimM N-terminal domain AM457_02600 PF00886 Ribosomal protein S16 AM457_02640 PF02401 LytB protein AM457_02645 PF00625 Guanylate kinase AM457_02650 PF01192 RNA polymerase Rpb6 AM457_02660 PF13291 ACT domain AM457_02660 PF04607 Region found in RelA / SpoT proteins AM457_02660 PF02824 TGS domain AM457_02665 PF01042 Endoribonuclease L-PSP AM457_02670 PF04324 BFD-like [2Fe-2S] binding domain AM457_02675 PF00210 Ferritin-like domain AM457_02680 PF11846 Virulence factor membrane-bound polymerase, C-terminal AM457_02680 PF15864 Protein glycosylation ligase AM457_02680 PF04932 O-Antigen ligase AM457_02685 PF07963 Prokaryotic N-terminal methylation motif AM457_02685 PF00114 Pilin (bacterial filament) AM457_02695 PF04536 TPM domain AM457_02700 PF04011 LemA family AM457_02710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM457_02710 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_02715 PF01645 Conserved region in glutamate synthase AM457_02715 PF00310 Glutamine amidotransferases class-II AM457_02715 PF04898 Glutamate synthase central domain AM457_02715 PF01493 GXGXG motif AM457_02725 PF01761 3-dehydroquinate synthase AM457_02730 PF01202 Shikimate kinase AM457_02735 PF07660 Secretin and TonB N terminus short domain AM457_02735 PF03958 Bacterial type II/III secretion system short domain AM457_02735 PF00263 Bacterial type II and III secretion system protein AM457_02735 PF11741 AMIN domain AM457_02760 PF00912 Transglycosylase AM457_02760 PF00905 Penicillin binding protein transpeptidase domain AM457_02760 PF17092 Penicillin-binding protein OB-like domain AM457_02765 PF13847 Methyltransferase domain AM457_02775 PF00953 Glycosyl transferase family 4 AM457_02780 PF08245 Mur ligase middle domain AM457_02780 PF02875 Mur ligase family, glutamate ligase domain AM457_02780 PF01225 Mur ligase family, catalytic domain AM457_02785 PF02875 Mur ligase family, glutamate ligase domain AM457_02785 PF01225 Mur ligase family, catalytic domain AM457_02785 PF08245 Mur ligase middle domain AM457_02790 PF03717 Penicillin-binding Protein dimerisation domain AM457_02790 PF00905 Penicillin binding protein transpeptidase domain AM457_02800 PF01795 MraW methylase family AM457_02815 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM457_02830 PF00324 Amino acid permease AM457_02860 PF01545 Cation efflux family AM457_02865 PF00873 AcrB/AcrD/AcrF family AM457_02870 PF00529 HlyD membrane-fusion protein of T1SS AM457_02870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_02895 PF00005 ABC transporter AM457_02895 PF12848 ABC transporter AM457_02900 PF01053 Cys/Met metabolism PLP-dependent enzyme AM457_02905 PF00106 short chain dehydrogenase AM457_02910 PF01740 STAS domain AM457_02910 PF00916 Sulfate permease family AM457_02915 PF16921 Tex protein YqgF-like domain AM457_02915 PF09371 Tex-like protein N-terminal domain AM457_02915 PF17674 HHH domain AM457_02915 PF00575 S1 RNA binding domain AM457_02920 PF00486 Transcriptional regulatory protein, C terminal AM457_02920 PF00072 Response regulator receiver domain AM457_02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_02925 PF00672 HAMP domain AM457_02925 PF00512 His Kinase A (phospho-acceptor) domain AM457_02935 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AM457_02935 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AM457_02940 PF00583 Acetyltransferase (GNAT) family AM457_02960 PF00475 Imidazoleglycerol-phosphate dehydratase AM457_02965 PF00117 Glutamine amidotransferase class-I AM457_02980 PF00977 Histidine biosynthesis protein AM457_03005 PF01636 Phosphotransferase enzyme family AM457_03010 PF00977 Histidine biosynthesis protein AM457_03025 PF00230 Major intrinsic protein AM457_03050 PF02705 K+ potassium transporter AM457_03060 PF13302 Acetyltransferase (GNAT) domain AM457_03070 PF02525 Flavodoxin-like fold AM457_03075 PF01638 HxlR-like helix-turn-helix AM457_03105 PF12833 Helix-turn-helix domain AM457_03105 PF02311 AraC-like ligand binding domain AM457_03110 PF00248 Aldo/keto reductase family AM457_03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_03130 PF03466 LysR substrate binding domain AM457_03135 PF07690 Major Facilitator Superfamily AM457_03155 PF01593 Flavin containing amine oxidoreductase AM457_03160 PF02678 Pirin AM457_03160 PF05726 Pirin C-terminal cupin domain AM457_03165 PF00857 Isochorismatase family AM457_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_03175 PF00171 Aldehyde dehydrogenase family AM457_03180 PF00202 Aminotransferase class-III AM457_03185 PF00155 Aminotransferase class I and II AM457_03185 PF00392 Bacterial regulatory proteins, gntR family AM457_03190 PF00324 Amino acid permease AM457_03200 PF03591 AzlC protein AM457_03210 PF00436 Single-strand binding protein family AM457_03215 PF07690 Major Facilitator Superfamily AM457_03225 PF08543 Phosphomethylpyrimidine kinase AM457_03225 PF03070 TENA/THI-4/PQQC family AM457_03225 PF02581 Thiamine monophosphate synthase AM457_03230 PF06942 GlpM protein AM457_03240 PF00107 Zinc-binding dehydrogenase AM457_03240 PF08240 Alcohol dehydrogenase GroES-like domain AM457_03245 PF16925 Tetracyclin repressor-like, C-terminal domain AM457_03245 PF00440 Bacterial regulatory proteins, tetR family AM457_03250 PF17760 UvrA interaction domain AM457_03250 PF17755 UvrA DNA-binding domain AM457_03250 PF00005 ABC transporter AM457_03255 PF17158 Membrane-associated sensor, integral membrane domain AM457_03255 PF00990 Diguanylate cyclase, GGDEF domain AM457_03265 PF02028 BCCT, betaine/carnitine/choline family transporter AM457_03275 PF00474 Sodium:solute symporter family AM457_03280 PF04341 Protein of unknown function, DUF485 AM457_03285 PF01627 Hpt domain AM457_03285 PF00672 HAMP domain AM457_03285 PF00072 Response regulator receiver domain AM457_03285 PF00512 His Kinase A (phospho-acceptor) domain AM457_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_03295 PF00072 Response regulator receiver domain AM457_03295 PF00196 Bacterial regulatory proteins, luxR family AM457_03300 PF03358 NADPH-dependent FMN reductase AM457_03305 PF00296 Luciferase-like monooxygenase AM457_03310 PF01037 Lrp/AsnC ligand binding domain AM457_03315 PF00857 Isochorismatase family AM457_03320 PF00501 AMP-binding enzyme AM457_03320 PF16177 Acetyl-coenzyme A synthetase N-terminus AM457_03320 PF13193 AMP-binding enzyme C-terminal domain AM457_03330 PF00924 Mechanosensitive ion channel AM457_03335 PF04452 RNA methyltransferase AM457_03340 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AM457_03345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM457_03365 PF02272 DHHA1 domain AM457_03365 PF17768 RecJ OB domain AM457_03365 PF01368 DHH family AM457_03370 PF01243 Pyridoxamine 5'-phosphate oxidase AM457_03370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM457_03375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM457_03375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM457_03375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM457_03375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM457_03380 PF00478 IMP dehydrogenase / GMP reductase domain AM457_03380 PF00571 CBS domain AM457_03385 PF03692 Putative zinc- or iron-chelating domain AM457_03390 PF01613 Flavin reductase like domain AM457_03390 PF00258 Flavodoxin AM457_03395 PF00593 TonB dependent receptor AM457_03395 PF07715 TonB-dependent Receptor Plug Domain AM457_03400 PF01169 Uncharacterized protein family UPF0016 AM457_03410 PF02817 e3 binding domain AM457_03410 PF00364 Biotin-requiring enzyme AM457_03410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM457_03415 PF17831 Pyruvate dehydrogenase E1 component middle domain AM457_03415 PF00456 Transketolase, thiamine diphosphate binding domain AM457_03420 PF01551 Peptidase family M23 AM457_03430 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM457_03435 PF00091 Tubulin/FtsZ family, GTPase domain AM457_03435 PF12327 FtsZ family, C-terminal domain AM457_03440 PF02491 SHS2 domain inserted in FTSA AM457_03445 PF03799 Cell division protein FtsQ AM457_03445 PF08478 POTRA domain, FtsQ-type AM457_03450 PF07478 D-ala D-ala ligase C-terminus AM457_03450 PF01820 D-ala D-ala ligase N-terminus AM457_03455 PF08245 Mur ligase middle domain AM457_03455 PF01225 Mur ligase family, catalytic domain AM457_03455 PF02875 Mur ligase family, glutamate ligase domain AM457_03460 PF04101 Glycosyltransferase family 28 C-terminal domain AM457_03460 PF03033 Glycosyltransferase family 28 N-terminal domain AM457_03465 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM457_03465 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM457_03490 PF00156 Phosphoribosyl transferase domain AM457_03495 PF03372 Endonuclease/Exonuclease/phosphatase family AM457_03500 PF03960 ArsC family AM457_03510 PF07859 alpha/beta hydrolase fold AM457_03515 PF00990 Diguanylate cyclase, GGDEF domain AM457_03515 PF07694 5TMR of 5TMR-LYT AM457_03520 PF11412 Disulphide bond corrector protein DsbC AM457_03520 PF02683 Cytochrome C biogenesis protein transmembrane region AM457_03550 PF00576 HIUase/Transthyretin family AM457_03555 PF00860 Permease family AM457_03565 PF01494 FAD binding domain AM457_03570 PF03561 Allantoicase repeat AM457_03575 PF04115 Ureidoglycolate lyase AM457_03580 PF00106 short chain dehydrogenase AM457_03585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_03585 PF01751 Toprim domain AM457_03585 PF00986 DNA gyrase B subunit, carboxyl terminus AM457_03585 PF00204 DNA gyrase B AM457_03610 PF01471 Putative peptidoglycan binding domain AM457_03610 PF01476 LysM domain AM457_03610 PF01510 N-acetylmuramoyl-L-alanine amidase AM457_03615 PF04717 Type VI secretion system, phage-baseplate injector AM457_03620 PF02600 Disulfide bond formation protein DsbB AM457_03625 PF04262 Glutamate-cysteine ligase AM457_03640 PF04286 Protein of unknown function (DUF445) AM457_03645 PF00155 Aminotransferase class I and II AM457_03650 PF01554 MatE AM457_03655 PF00106 short chain dehydrogenase AM457_03665 PF00486 Transcriptional regulatory protein, C terminal AM457_03665 PF00072 Response regulator receiver domain AM457_03670 PF00989 PAS fold AM457_03670 PF11808 Phosphate regulon sensor protein PhoR AM457_03670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_03670 PF00512 His Kinase A (phospho-acceptor) domain AM457_03680 PF02666 Phosphatidylserine decarboxylase AM457_03685 PF00581 Rhodanese-like domain AM457_03690 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM457_03690 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AM457_03695 PF02580 D-Tyr-tRNA(Tyr) deacylase AM457_03725 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM457_03725 PF00925 GTP cyclohydrolase II AM457_03730 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM457_03735 PF01029 NusB family AM457_03740 PF00586 AIR synthase related protein, N-terminal domain AM457_03740 PF02769 AIR synthase related protein, C-terminal domain AM457_03745 PF04608 Phosphatidylglycerophosphatase A AM457_03750 PF12804 MobA-like NTP transferase domain AM457_03750 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_03750 PF14602 Hexapeptide repeat of succinyl-transferase AM457_03755 PF01380 SIS domain AM457_03760 PF08721 TnsA endonuclease C terminal AM457_03760 PF08722 TnsA endonuclease N terminal AM457_03765 PF00665 Integrase core domain AM457_03770 PF13401 AAA domain AM457_03770 PF11426 Tn7 transposition regulator TnsC AM457_03775 PF06527 TniQ AM457_03775 PF15978 Tn7-like transposition protein D AM457_03790 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM457_03810 PF01810 LysE type translocator AM457_03820 PF13419 Haloacid dehalogenase-like hydrolase AM457_03830 PF00491 Arginase family AM457_03835 PF01979 Amidohydrolase family AM457_03840 PF00324 Amino acid permease AM457_03845 PF00221 Aromatic amino acid lyase AM457_03850 PF01175 Urocanase Rossmann-like domain AM457_03850 PF17392 Urocanase C-terminal domain AM457_03850 PF17391 Urocanase N-terminal domain AM457_03855 PF05962 HutD AM457_03860 PF00392 Bacterial regulatory proteins, gntR family AM457_03860 PF07702 UTRA domain AM457_03870 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM457_03870 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM457_03880 PF00324 Amino acid permease AM457_03890 PF14497 Glutathione S-transferase, C-terminal domain AM457_03890 PF02798 Glutathione S-transferase, N-terminal domain AM457_03895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM457_03905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM457_03910 PF04463 Protein of unknown function (DUF523) AM457_03915 PF01554 MatE AM457_03920 PF01758 Sodium Bile acid symporter family AM457_03925 PF00857 Isochorismatase family AM457_03930 PF00701 Dihydrodipicolinate synthetase family AM457_03940 PF01259 SAICAR synthetase AM457_03950 PF01226 Formate/nitrite transporter AM457_03955 PF12002 MgsA AAA+ ATPase C terminal AM457_03955 PF16193 AAA C-terminal domain AM457_03955 PF00004 ATPase family associated with various cellular activities (AAA) AM457_03960 PF07995 Glucose / Sorbosone dehydrogenase AM457_03965 PF03692 Putative zinc- or iron-chelating domain AM457_03970 PF07043 Protein of unknown function (DUF1328) AM457_03985 PF00730 HhH-GPD superfamily base excision DNA repair protein AM457_03985 PF14815 NUDIX domain AM457_03985 PF00633 Helix-hairpin-helix motif AM457_03985 PF10576 Iron-sulfur binding domain of endonuclease III AM457_04000 PF03352 Methyladenine glycosylase AM457_04005 PF00107 Zinc-binding dehydrogenase AM457_04005 PF08240 Alcohol dehydrogenase GroES-like domain AM457_04010 PF00392 Bacterial regulatory proteins, gntR family AM457_04010 PF00155 Aminotransferase class I and II AM457_04025 PF03466 LysR substrate binding domain AM457_04025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_04030 PF00248 Aldo/keto reductase family AM457_04035 PF07690 Major Facilitator Superfamily AM457_04045 PF01113 Dihydrodipicolinate reductase, N-terminus AM457_04045 PF05173 Dihydrodipicolinate reductase, C-terminus AM457_04055 PF00226 DnaJ domain AM457_04055 PF01556 DnaJ C terminal domain AM457_04055 PF00684 DnaJ central domain AM457_04065 PF00873 AcrB/AcrD/AcrF family AM457_04070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_04075 PF00440 Bacterial regulatory proteins, tetR family AM457_04075 PF08361 MAATS-type transcriptional repressor, C-terminal region AM457_04080 PF00311 Phosphoenolpyruvate carboxylase AM457_04085 PF00860 Permease family AM457_04090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_04090 PF03466 LysR substrate binding domain AM457_04105 PF00920 Dehydratase family AM457_04110 PF02911 Formyl transferase, C-terminal domain AM457_04110 PF00551 Formyl transferase AM457_04115 PF01029 NusB family AM457_04115 PF01189 16S rRNA methyltransferase RsmB/F AM457_04125 PF00209 Sodium:neurotransmitter symporter family AM457_04165 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM457_04170 PF07859 alpha/beta hydrolase fold AM457_04195 PF01025 GrpE AM457_04200 PF00012 Hsp70 protein AM457_04225 PF13406 Transglycosylase SLT domain AM457_04230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM457_04230 PF02222 ATP-grasp domain AM457_04235 PF00731 AIR carboxylase AM457_04250 PF01225 Mur ligase family, catalytic domain AM457_04250 PF02875 Mur ligase family, glutamate ligase domain AM457_04250 PF08245 Mur ligase middle domain AM457_04260 PF01569 PAP2 superfamily AM457_04265 PF03741 Integral membrane protein TerC family AM457_04275 PF03738 Glutathionylspermidine synthase preATP-grasp AM457_04280 PF00355 Rieske [2Fe-2S] domain AM457_04285 PF01979 Amidohydrolase family AM457_04290 PF00156 Phosphoribosyl transferase domain AM457_04300 PF13098 Thioredoxin-like domain AM457_04300 PF10411 Disulfide bond isomerase protein N-terminus AM457_04305 PF01545 Cation efflux family AM457_04305 PF16916 Dimerisation domain of Zinc Transporter AM457_04310 PF02583 Metal-sensitive transcriptional repressor AM457_04315 PF12631 MnmE helical domain AM457_04315 PF01926 50S ribosome-binding GTPase AM457_04315 PF10396 GTP-binding protein TrmE N-terminus AM457_04320 PF02096 60Kd inner membrane protein AM457_04320 PF14849 YidC periplasmic domain AM457_04325 PF01809 Putative membrane protein insertion efficiency factor AM457_04330 PF00825 Ribonuclease P AM457_04335 PF00468 Ribosomal protein L34 AM457_04340 PF11638 DnaA N-terminal domain AM457_04340 PF08299 Bacterial dnaA protein helix-turn-helix AM457_04340 PF00308 Bacterial dnaA protein AM457_04345 PF00712 DNA polymerase III beta subunit, N-terminal domain AM457_04345 PF02768 DNA polymerase III beta subunit, C-terminal domain AM457_04345 PF02767 DNA polymerase III beta subunit, central domain AM457_04350 PF02463 RecF/RecN/SMC N terminal domain AM457_04355 PF01751 Toprim domain AM457_04355 PF00986 DNA gyrase B subunit, carboxyl terminus AM457_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_04355 PF00204 DNA gyrase B AM457_04355 PF18053 DNA gyrase B subunit insert domain AM457_04365 PF09335 SNARE associated Golgi protein AM457_04370 PF00005 ABC transporter AM457_04370 PF12848 ABC transporter AM457_04390 PF01521 Iron-sulphur cluster biosynthesis AM457_04395 PF00561 alpha/beta hydrolase fold AM457_04400 PF03702 Anhydro-N-acetylmuramic acid kinase AM457_04405 PF00579 tRNA synthetases class I (W and Y) AM457_04450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM457_04455 PF01252 Signal peptidase (SPase) II AM457_04460 PF00133 tRNA synthetases class I (I, L, M and V) AM457_04460 PF08264 Anticodon-binding domain of tRNA AM457_04460 PF06827 Zinc finger found in FPG and IleRS AM457_04465 PF06574 FAD synthetase AM457_04465 PF01687 Riboflavin kinase AM457_04475 PF01048 Phosphorylase superfamily AM457_04480 PF08362 YcdC-like protein, C-terminal region AM457_04480 PF00440 Bacterial regulatory proteins, tetR family AM457_04485 PF00005 ABC transporter AM457_04490 PF00528 Binding-protein-dependent transport system inner membrane component AM457_04495 PF00296 Luciferase-like monooxygenase AM457_04500 PF09084 NMT1/THI5 like AM457_04505 PF09084 NMT1/THI5 like AM457_04510 PF00583 Acetyltransferase (GNAT) family AM457_04510 PF00696 Amino acid kinase family AM457_04525 PF00106 short chain dehydrogenase AM457_04530 PF13419 Haloacid dehalogenase-like hydrolase AM457_04540 PF01323 DSBA-like thioredoxin domain AM457_04545 PF00440 Bacterial regulatory proteins, tetR family AM457_04545 PF08360 QacR-like protein, C-terminal region AM457_04550 PF00440 Bacterial regulatory proteins, tetR family AM457_04555 PF00175 Oxidoreductase NAD-binding domain AM457_04560 PF00487 Fatty acid desaturase AM457_04565 PF03725 3' exoribonuclease family, domain 2 AM457_04565 PF01138 3' exoribonuclease family, domain 1 AM457_04575 PF05506 Domain of unknown function (DUF756) AM457_04575 PF04185 Phosphoesterase family AM457_04585 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM457_04585 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM457_04590 PF01510 N-acetylmuramoyl-L-alanine amidase AM457_04595 PF03023 Lipid II flippase MurJ AM457_04600 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM457_04600 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM457_04605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM457_04605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM457_04610 PF13614 AAA domain AM457_04610 PF13807 G-rich domain on putative tyrosine kinase AM457_04610 PF02706 Chain length determinant protein AM457_04615 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM457_04620 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AM457_04620 PF02563 Polysaccharide biosynthesis/export protein AM457_04620 PF10531 SLBB domain AM457_04625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM457_04625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM457_04625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM457_04630 PF01370 NAD dependent epimerase/dehydratase family AM457_04645 PF13439 Glycosyltransferase Family 4 AM457_04645 PF00534 Glycosyl transferases group 1 AM457_04655 PF13477 Glycosyl transferase 4-like AM457_04655 PF00534 Glycosyl transferases group 1 AM457_04660 PF02397 Bacterial sugar transferase AM457_04665 PF14602 Hexapeptide repeat of succinyl-transferase AM457_04665 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_04665 PF17836 PglD N-terminal domain AM457_04670 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM457_04675 PF02719 Polysaccharide biosynthesis protein AM457_04680 PF00483 Nucleotidyl transferase AM457_04685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM457_04685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM457_04685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM457_04690 PF00342 Phosphoglucose isomerase AM457_04695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM457_04695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM457_04695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM457_04695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM457_04700 PF02652 L-lactate permease AM457_04705 PF07729 FCD domain AM457_04705 PF00392 Bacterial regulatory proteins, gntR family AM457_04710 PF01070 FMN-dependent dehydrogenase AM457_04715 PF01565 FAD binding domain AM457_04715 PF09330 D-lactate dehydrogenase, membrane binding AM457_04720 PF00155 Aminotransferase class I and II AM457_04730 PF00392 Bacterial regulatory proteins, gntR family AM457_04730 PF07729 FCD domain AM457_04740 PF00285 Citrate synthase, C-terminal domain AM457_04745 PF00694 Aconitase C-terminal domain AM457_04745 PF00330 Aconitase family (aconitate hydratase) AM457_04780 PF02801 Beta-ketoacyl synthase, C-terminal domain AM457_04780 PF00109 Beta-ketoacyl synthase, N-terminal domain AM457_04795 PF00849 RNA pseudouridylate synthase AM457_04810 PF00593 TonB dependent receptor AM457_04810 PF07715 TonB-dependent Receptor Plug Domain AM457_04820 PF01037 Lrp/AsnC ligand binding domain AM457_04825 PF01266 FAD dependent oxidoreductase AM457_04830 PF01168 Alanine racemase, N-terminal domain AM457_04830 PF00842 Alanine racemase, C-terminal domain AM457_04835 PF01042 Endoribonuclease L-PSP AM457_04840 PF00324 Amino acid permease AM457_04845 PF00324 Amino acid permease AM457_04855 PF00171 Aldehyde dehydrogenase family AM457_04860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM457_04860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM457_04865 PF00501 AMP-binding enzyme AM457_04865 PF13193 AMP-binding enzyme C-terminal domain AM457_04870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_04870 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_04870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_04875 PF00378 Enoyl-CoA hydratase/isomerase AM457_04880 PF00378 Enoyl-CoA hydratase/isomerase AM457_04885 PF00083 Sugar (and other) transporter AM457_04885 PF07690 Major Facilitator Superfamily AM457_04890 PF00765 Autoinducer synthase AM457_04905 PF00196 Bacterial regulatory proteins, luxR family AM457_04905 PF03472 Autoinducer binding domain AM457_04910 PF00501 AMP-binding enzyme AM457_04915 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_04915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_04915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_04920 PF02801 Beta-ketoacyl synthase, C-terminal domain AM457_04920 PF08242 Methyltransferase domain AM457_04920 PF00550 Phosphopantetheine attachment site AM457_04920 PF14765 Polyketide synthase dehydratase AM457_04920 PF00109 Beta-ketoacyl synthase, N-terminal domain AM457_04920 PF16197 Ketoacyl-synthetase C-terminal extension AM457_04920 PF00975 Thioesterase domain AM457_04925 PF13193 AMP-binding enzyme C-terminal domain AM457_04925 PF00501 AMP-binding enzyme AM457_04925 PF00668 Condensation domain AM457_04925 PF00550 Phosphopantetheine attachment site AM457_04925 PF00975 Thioesterase domain AM457_04940 PF12697 Alpha/beta hydrolase family AM457_04945 PF01648 4'-phosphopantetheinyl transferase superfamily AM457_04960 PF01722 BolA-like protein AM457_04970 PF13614 AAA domain AM457_04985 PF09335 SNARE associated Golgi protein AM457_04990 PF07681 DoxX AM457_04995 PF04286 Protein of unknown function (DUF445) AM457_05000 PF02540 NAD synthase AM457_05000 PF00958 GMP synthase C terminal domain AM457_05000 PF00117 Glutamine amidotransferase class-I AM457_05005 PF01909 Nucleotidyltransferase domain AM457_05005 PF13427 Domain of unknown function (DUF4111) AM457_05010 PF03551 Transcriptional regulator PadR-like family AM457_05020 PF02678 Pirin AM457_05020 PF05726 Pirin C-terminal cupin domain AM457_05040 PF00750 tRNA synthetases class I (R) AM457_05040 PF05746 DALR anticodon binding domain AM457_05040 PF03485 Arginyl tRNA synthetase N terminal domain AM457_05045 PF00390 Malic enzyme, N-terminal domain AM457_05045 PF03949 Malic enzyme, NAD binding domain AM457_05050 PF04261 Dyp-type peroxidase family AM457_05055 PF01810 LysE type translocator AM457_05060 PF00950 ABC 3 transport family AM457_05065 PF00005 ABC transporter AM457_05085 PF00119 ATP synthase A chain AM457_05090 PF00137 ATP synthase subunit C AM457_05095 PF00430 ATP synthase B/B' CF(0) AM457_05100 PF00213 ATP synthase delta (OSCP) subunit AM457_05105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM457_05105 PF00306 ATP synthase alpha/beta chain, C terminal domain AM457_05105 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM457_05110 PF00231 ATP synthase AM457_05115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM457_05115 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM457_05120 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM457_05130 PF00255 Glutathione peroxidase AM457_05140 PF07690 Major Facilitator Superfamily AM457_05145 PF00440 Bacterial regulatory proteins, tetR family AM457_05150 PF00892 EamA-like transporter family AM457_05155 PF01300 Telomere recombination AM457_05160 PF17782 DprA winged helix domain AM457_05160 PF02481 DNA recombination-mediator protein A AM457_05170 PF01327 Polypeptide deformylase AM457_05180 PF00593 TonB dependent receptor AM457_05180 PF07715 TonB-dependent Receptor Plug Domain AM457_05195 PF00440 Bacterial regulatory proteins, tetR family AM457_05230 PF00291 Pyridoxal-phosphate dependent enzyme AM457_05240 PF03358 NADPH-dependent FMN reductase AM457_05260 PF11842 Domain of unknown function (DUF3362) AM457_05260 PF08497 Radical SAM N-terminal AM457_05260 PF04055 Radical SAM superfamily AM457_05275 PF00817 impB/mucB/samB family AM457_05275 PF11799 impB/mucB/samB family C-terminal domain AM457_05275 PF11798 IMS family HHH motif AM457_05285 PF07690 Major Facilitator Superfamily AM457_05290 PF03641 Possible lysine decarboxylase AM457_05295 PF03741 Integral membrane protein TerC family AM457_05295 PF03471 Transporter associated domain AM457_05300 PF02810 SEC-C motif AM457_05305 PF03458 UPF0126 domain AM457_05310 PF07690 Major Facilitator Superfamily AM457_05315 PF03989 DNA gyrase C-terminal domain, beta-propeller AM457_05315 PF00521 DNA gyrase/topoisomerase IV, subunit A AM457_05320 PF00501 AMP-binding enzyme AM457_05320 PF13193 AMP-binding enzyme C-terminal domain AM457_05335 PF00719 Inorganic pyrophosphatase AM457_05340 PF03573 outer membrane porin, OprD family AM457_05350 PF16970 Type-1 fimbrial protein, A AM457_05365 PF06968 Biotin and Thiamin Synthesis associated domain AM457_05365 PF04055 Radical SAM superfamily AM457_05370 PF08331 Domain of unknown function (DUF1730) AM457_05375 PF01256 Carbohydrate kinase AM457_05375 PF03853 YjeF-related protein N-terminus AM457_05380 PF02075 Crossover junction endodeoxyribonuclease RuvC AM457_05395 PF00905 Penicillin binding protein transpeptidase domain AM457_05410 PF00701 Dihydrodipicolinate synthetase family AM457_05420 PF00155 Aminotransferase class I and II AM457_05420 PF00392 Bacterial regulatory proteins, gntR family AM457_05425 PF01078 Magnesium chelatase, subunit ChlI AM457_05425 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM457_05435 PF00665 Integrase core domain AM457_05460 PF00582 Universal stress protein family AM457_05465 PF00916 Sulfate permease family AM457_05465 PF01740 STAS domain AM457_05475 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM457_05475 PF01078 Magnesium chelatase, subunit ChlI AM457_05485 PF00543 Nitrogen regulatory protein P-II AM457_05490 PF00909 Ammonium Transporter Family AM457_05495 PF03477 ATP cone domain AM457_05500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM457_05500 PF01872 RibD C-terminal domain AM457_05510 PF00677 Lumazine binding domain AM457_05530 PF02789 Cytosol aminopeptidase family, N-terminal domain AM457_05530 PF00883 Cytosol aminopeptidase family, catalytic domain AM457_05540 PF03739 Lipopolysaccharide export system permease LptF/LptG AM457_05545 PF01676 Metalloenzyme superfamily AM457_05545 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM457_05550 PF00595 PDZ domain AM457_05550 PF03572 Peptidase family S41 AM457_05555 PF00158 Sigma-54 interaction domain AM457_05555 PF00072 Response regulator receiver domain AM457_05555 PF02954 Bacterial regulatory protein, Fis family AM457_05560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_05560 PF00512 His Kinase A (phospho-acceptor) domain AM457_05565 PF00072 Response regulator receiver domain AM457_05565 PF00196 Bacterial regulatory proteins, luxR family AM457_05570 PF00768 D-alanyl-D-alanine carboxypeptidase AM457_05575 PF00291 Pyridoxal-phosphate dependent enzyme AM457_05580 PF03447 Homoserine dehydrogenase, NAD binding domain AM457_05580 PF01842 ACT domain AM457_05580 PF00742 Homoserine dehydrogenase AM457_05585 PF10411 Disulfide bond isomerase protein N-terminus AM457_05585 PF13098 Thioredoxin-like domain AM457_05590 PF02899 Phage integrase, N-terminal SAM-like domain AM457_05590 PF00589 Phage integrase family AM457_05600 PF02421 Ferrous iron transport protein B AM457_05600 PF07670 Nucleoside recognition AM457_05600 PF07664 Ferrous iron transport protein B C terminus AM457_05610 PF02875 Mur ligase family, glutamate ligase domain AM457_05610 PF08245 Mur ligase middle domain AM457_05615 PF01098 Cell cycle protein AM457_05620 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM457_05625 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM457_05630 PF00149 Calcineurin-like phosphoesterase AM457_05635 PF00293 NUDIX domain AM457_05640 PF01964 Radical SAM ThiC family AM457_05640 PF13667 ThiC-associated domain AM457_05655 PF00892 EamA-like transporter family AM457_05660 PF02321 Outer membrane efflux protein AM457_05665 PF01895 PhoU domain AM457_05670 PF04362 Bacterial Fe(2+) trafficking AM457_05675 PF00206 Lyase AM457_05675 PF14698 Argininosuccinate lyase C-terminal AM457_05680 PF06580 Histidine kinase AM457_05680 PF07694 5TMR of 5TMR-LYT AM457_05680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_05685 PF00072 Response regulator receiver domain AM457_05685 PF04397 LytTr DNA-binding domain AM457_05690 PF03900 Porphobilinogen deaminase, C-terminal domain AM457_05690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM457_05715 PF00816 H-NS histone family AM457_05730 PF03958 Bacterial type II/III secretion system short domain AM457_05730 PF00263 Bacterial type II and III secretion system protein AM457_05735 PF12401 Protein of unknown function (DUF2662) AM457_05735 PF00498 FHA domain AM457_05740 PF13419 Haloacid dehalogenase-like hydrolase AM457_05745 PF00425 chorismate binding enzyme AM457_05745 PF04715 Anthranilate synthase component I, N terminal region AM457_05770 PF03144 Elongation factor Tu domain 2 AM457_05770 PF00009 Elongation factor Tu GTP binding domain AM457_05770 PF03143 Elongation factor Tu C-terminal domain AM457_05780 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM457_05785 PF02357 Transcription termination factor nusG AM457_05785 PF00467 KOW motif AM457_05790 PF00298 Ribosomal protein L11, RNA binding domain AM457_05790 PF03946 Ribosomal protein L11, N-terminal domain AM457_05795 PF00687 Ribosomal protein L1p/L10e family AM457_05800 PF00466 Ribosomal protein L10 AM457_05805 PF00542 Ribosomal protein L7/L12 C-terminal domain AM457_05805 PF16320 Ribosomal protein L7/L12 dimerisation domain AM457_05810 PF10385 RNA polymerase beta subunit external 1 domain AM457_05810 PF04565 RNA polymerase Rpb2, domain 3 AM457_05810 PF04561 RNA polymerase Rpb2, domain 2 AM457_05810 PF04560 RNA polymerase Rpb2, domain 7 AM457_05810 PF04563 RNA polymerase beta subunit AM457_05810 PF00562 RNA polymerase Rpb2, domain 6 AM457_05815 PF00623 RNA polymerase Rpb1, domain 2 AM457_05815 PF05000 RNA polymerase Rpb1, domain 4 AM457_05815 PF04997 RNA polymerase Rpb1, domain 1 AM457_05815 PF04998 RNA polymerase Rpb1, domain 5 AM457_05815 PF04983 RNA polymerase Rpb1, domain 3 AM457_05835 PF00561 alpha/beta hydrolase fold AM457_05840 PF03553 Na+/H+ antiporter family AM457_05840 PF13726 Na+-H+ antiporter family AM457_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_05855 PF00183 Hsp90 protein AM457_05870 PF01323 DSBA-like thioredoxin domain AM457_05880 PF09278 MerR, DNA binding AM457_05880 PF00376 MerR family regulatory protein AM457_05900 PF00108 Thiolase, N-terminal domain AM457_05900 PF02803 Thiolase, C-terminal domain AM457_05905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM457_05905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM457_05905 PF00378 Enoyl-CoA hydratase/isomerase AM457_05925 PF02151 UvrB/uvrC motif AM457_05925 PF01541 GIY-YIG catalytic domain AM457_05925 PF08459 UvrC Helix-hairpin-helix N-terminal AM457_05935 PF01066 CDP-alcohol phosphatidyltransferase AM457_05940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM457_05940 PF02805 Metal binding domain of Ada AM457_05940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM457_05940 PF12833 Helix-turn-helix domain AM457_05965 PF13533 Biotin-lipoyl like AM457_05970 PF03652 Holliday junction resolvase AM457_05975 PF02622 Uncharacterized ACR, COG1678 AM457_05980 PF02463 RecF/RecN/SMC N terminal domain AM457_05990 PF06865 Pyrimidine/purine nucleoside phosphorylase AM457_05995 PF00588 SpoU rRNA Methylase family AM457_05995 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM457_06005 PF01121 Dephospho-CoA kinase AM457_06010 PF01478 Type IV leader peptidase family AM457_06010 PF06750 Bacterial Peptidase A24 N-terminal domain AM457_06015 PF00482 Type II secretion system (T2SS), protein F AM457_06020 PF00437 Type II/IV secretion system protein AM457_06020 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM457_06025 PF00121 Triosephosphate isomerase AM457_06030 PF03840 Preprotein translocase SecG subunit AM457_06050 PF17384 RimP C-terminal SH3 domain AM457_06050 PF02576 RimP N-terminal domain AM457_06055 PF13184 NusA-like KH domain AM457_06055 PF00575 S1 RNA binding domain AM457_06055 PF08529 NusA N-terminal domain AM457_06060 PF11987 Translation-initiation factor 2 AM457_06060 PF00009 Elongation factor Tu GTP binding domain AM457_06060 PF04760 Translation initiation factor IF-2, N-terminal region AM457_06060 PF08364 Bacterial translation initiation factor IF-2 associated region AM457_06065 PF02033 Ribosome-binding factor A AM457_06075 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AM457_06085 PF00361 Proton-conducting membrane transporter AM457_06090 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM457_06095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM457_06095 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AM457_06095 PF13244 Domain of unknown function (DUF4040) AM457_06095 PF00361 Proton-conducting membrane transporter AM457_06110 PF01502 Phosphoribosyl-AMP cyclohydrolase AM457_06115 PF01494 FAD binding domain AM457_06120 PF03109 ABC1 family AM457_06130 PF01209 ubiE/COQ5 methyltransferase family AM457_06140 PF03976 Polyphosphate kinase 2 (PPK2) AM457_06150 PF17946 RecC C-terminal domain AM457_06155 PF00580 UvrD/REP helicase N-terminal domain AM457_06155 PF13361 UvrD-like helicase C-terminal domain AM457_06155 PF12705 PD-(D/E)XK nuclease superfamily AM457_06160 PF13538 UvrD-like helicase C-terminal domain AM457_06170 PF00312 Ribosomal protein S15 AM457_06175 PF03725 3' exoribonuclease family, domain 2 AM457_06175 PF00575 S1 RNA binding domain AM457_06175 PF00013 KH domain AM457_06175 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM457_06175 PF01138 3' exoribonuclease family, domain 1 AM457_06180 PF01544 CorA-like Mg2+ transporter protein AM457_06190 PF01556 DnaJ C terminal domain AM457_06190 PF00226 DnaJ domain AM457_06200 PF01430 Hsp33 protein AM457_06205 PF00999 Sodium/hydrogen exchanger family AM457_06205 PF02254 TrkA-N domain AM457_06210 PF00271 Helicase conserved C-terminal domain AM457_06210 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM457_06210 PF00270 DEAD/DEAH box helicase AM457_06210 PF18074 Primosomal protein N C-terminal domain AM457_06210 PF17764 3′ DNA-binding domain (3′BD) AM457_06215 PF00482 Type II secretion system (T2SS), protein F AM457_06220 PF08334 Type II secretion system (T2SS), protein G AM457_06220 PF07963 Prokaryotic N-terminal methylation motif AM457_06230 PF01588 Putative tRNA binding domain AM457_06235 PF00795 Carbon-nitrogen hydrolase AM457_06240 PF00571 CBS domain AM457_06240 PF03471 Transporter associated domain AM457_06245 PF01206 Sulfurtransferase TusA AM457_06260 PF01177 Asp/Glu/Hydantoin racemase AM457_06270 PF00762 Ferrochelatase AM457_06275 PF00753 Metallo-beta-lactamase superfamily AM457_06280 PF03884 DNA gyrase inhibitor YacG AM457_06300 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM457_06310 PF01197 Ribosomal protein L31 AM457_06315 PF03109 ABC1 family AM457_06320 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM457_06320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_06325 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM457_06325 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_06325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_06330 PF01554 MatE AM457_06340 PF04055 Radical SAM superfamily AM457_06340 PF06969 HemN C-terminal domain AM457_06345 PF00106 short chain dehydrogenase AM457_06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_06350 PF03466 LysR substrate binding domain AM457_06365 PF00501 AMP-binding enzyme AM457_06365 PF13193 AMP-binding enzyme C-terminal domain AM457_06370 PF00575 S1 RNA binding domain AM457_06370 PF10150 Ribonuclease E/G family AM457_06370 PF12111 Polyribonucleotide phosphorylase C terminal AM457_06380 PF00849 RNA pseudouridylate synthase AM457_06380 PF01479 S4 domain AM457_06385 PF13419 Haloacid dehalogenase-like hydrolase AM457_06390 PF08279 HTH domain AM457_06390 PF13280 WYL domain AM457_06395 PF02798 Glutathione S-transferase, N-terminal domain AM457_06405 PF03466 LysR substrate binding domain AM457_06405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_06410 PF12706 Beta-lactamase superfamily domain AM457_06415 PF00141 Peroxidase AM457_06420 PF02896 PEP-utilising enzyme, TIM barrel domain AM457_06420 PF01590 GAF domain AM457_06420 PF00391 PEP-utilising enzyme, mobile domain AM457_06420 PF05524 PEP-utilising enzyme, N-terminal AM457_06425 PF00293 NUDIX domain AM457_06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_06435 PF03466 LysR substrate binding domain AM457_06445 PF00330 Aconitase family (aconitate hydratase) AM457_06450 PF00694 Aconitase C-terminal domain AM457_06460 PF00180 Isocitrate/isopropylmalate dehydrogenase AM457_06475 PF01176 Translation initiation factor 1A / IF-1 AM457_06485 PF01416 tRNA pseudouridine synthase AM457_06505 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM457_06505 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM457_06515 PF00375 Sodium:dicarboxylate symporter family AM457_06525 PF03279 Bacterial lipid A biosynthesis acyltransferase AM457_06530 PF01810 LysE type translocator AM457_06545 PF00107 Zinc-binding dehydrogenase AM457_06545 PF08240 Alcohol dehydrogenase GroES-like domain AM457_06560 PF01396 Topoisomerase DNA binding C4 zinc finger AM457_06560 PF08272 Topoisomerase I zinc-ribbon-like AM457_06560 PF01131 DNA topoisomerase AM457_06560 PF01751 Toprim domain AM457_06575 PF13361 UvrD-like helicase C-terminal domain AM457_06575 PF00580 UvrD/REP helicase N-terminal domain AM457_06580 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AM457_06600 PF02254 TrkA-N domain AM457_06600 PF00999 Sodium/hydrogen exchanger family AM457_06605 PF00471 Ribosomal protein L33 AM457_06610 PF00830 Ribosomal L28 family AM457_06615 PF00171 Aldehyde dehydrogenase family AM457_06625 PF00551 Formyl transferase AM457_06625 PF01842 ACT domain AM457_06635 PF01618 MotA/TolQ/ExbB proton channel family AM457_06645 PF01625 Peptide methionine sulfoxide reductase AM457_06655 PF00186 Dihydrofolate reductase AM457_06660 PF00303 Thymidylate synthase AM457_06675 PF01790 Prolipoprotein diacylglyceryl transferase AM457_06695 PF00902 Sec-independent protein translocase protein (TatC) AM457_06700 PF02416 mttA/Hcf106 family AM457_06705 PF02416 mttA/Hcf106 family AM457_06730 PF00561 alpha/beta hydrolase fold AM457_06730 PF07021 Methionine biosynthesis protein MetW AM457_06735 PF00561 alpha/beta hydrolase fold AM457_06740 PF08502 LeuA allosteric (dimerisation) domain AM457_06740 PF00682 HMGL-like AM457_06745 PF13640 2OG-Fe(II) oxygenase superfamily AM457_06745 PF18331 PKHD-type hydroxylase C-terminal domain AM457_06750 PF00593 TonB dependent receptor AM457_06750 PF07715 TonB-dependent Receptor Plug Domain AM457_06755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM457_06755 PF05698 Bacterial trigger factor protein (TF) C-terminus AM457_06755 PF05697 Bacterial trigger factor protein (TF) AM457_06760 PF00574 Clp protease AM457_06765 PF06689 ClpX C4-type zinc finger AM457_06765 PF10431 C-terminal, D2-small domain, of ClpB protein AM457_06765 PF07724 AAA domain (Cdc48 subfamily) AM457_06780 PF05681 Fumarate hydratase (Fumerase) AM457_06780 PF05683 Fumarase C-terminus AM457_06785 PF01515 Phosphate acetyl/butaryl transferase AM457_06785 PF07085 DRTGG domain AM457_06790 PF00871 Acetokinase family AM457_06795 PF00920 Dehydratase family AM457_06800 PF01081 KDPG and KHG aldolase AM457_06805 PF02447 GntP family permease AM457_06810 PF01202 Shikimate kinase AM457_06815 PF00171 Aldehyde dehydrogenase family AM457_06820 PF00171 Aldehyde dehydrogenase family AM457_06825 PF00561 alpha/beta hydrolase fold AM457_06835 PF00933 Glycosyl hydrolase family 3 N terminal domain AM457_06840 PF03572 Peptidase family S41 AM457_06840 PF11818 C-terminal domain of tail specific protease (DUF3340) AM457_06840 PF17804 Tail specific protease N-terminal domain AM457_06840 PF00595 PDZ domain AM457_06845 PF00534 Glycosyl transferases group 1 AM457_06845 PF13439 Glycosyltransferase Family 4 AM457_06850 PF01569 PAP2 superfamily AM457_06855 PF04384 Iron-sulphur cluster assembly AM457_06860 PF00334 Nucleoside diphosphate kinase AM457_06865 PF04055 Radical SAM superfamily AM457_06875 PF13464 Domain of unknown function (DUF4115) AM457_06880 PF04551 GcpE protein AM457_06885 PF03129 Anticodon binding domain AM457_06885 PF13393 Histidyl-tRNA synthetase AM457_06895 PF13360 PQQ-like domain AM457_06900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM457_06900 PF01926 50S ribosome-binding GTPase AM457_06910 PF02556 Preprotein translocase subunit SecB AM457_06915 PF00462 Glutaredoxin AM457_06925 PF03193 RsgA GTPase AM457_06930 PF00929 Exonuclease AM457_06945 PF02321 Outer membrane efflux protein AM457_06950 PF12704 MacB-like periplasmic core domain AM457_06950 PF00005 ABC transporter AM457_06950 PF02687 FtsX-like permease family AM457_06955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_06970 PF09334 tRNA synthetases class I (M) AM457_06970 PF08264 Anticodon-binding domain of tRNA AM457_06970 PF13603 Leucyl-tRNA synthetase, Domain 2 AM457_06970 PF00133 tRNA synthetases class I (I, L, M and V) AM457_06980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM457_06980 PF00205 Thiamine pyrophosphate enzyme, central domain AM457_06980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM457_06985 PF10369 Small subunit of acetolactate synthase AM457_06990 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM457_06990 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM457_07025 PF16658 Class II release factor RF3, C-terminal domain AM457_07025 PF03144 Elongation factor Tu domain 2 AM457_07025 PF00009 Elongation factor Tu GTP binding domain AM457_07040 PF01026 TatD related DNase AM457_07045 PF00694 Aconitase C-terminal domain AM457_07045 PF00330 Aconitase family (aconitate hydratase) AM457_07050 PF00899 ThiF family AM457_07060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_07060 PF03466 LysR substrate binding domain AM457_07070 PF01207 Dihydrouridine synthase (Dus) AM457_07075 PF00589 Phage integrase family AM457_07150 PF04945 YHS domain AM457_07155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_07155 PF00512 His Kinase A (phospho-acceptor) domain AM457_07155 PF00672 HAMP domain AM457_07160 PF00072 Response regulator receiver domain AM457_07160 PF00486 Transcriptional regulatory protein, C terminal AM457_07170 PF07732 Multicopper oxidase AM457_07170 PF00394 Multicopper oxidase AM457_07170 PF07731 Multicopper oxidase AM457_07190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_07195 PF00873 AcrB/AcrD/AcrF family AM457_07205 PF07670 Nucleoside recognition AM457_07205 PF07664 Ferrous iron transport protein B C terminus AM457_07205 PF02421 Ferrous iron transport protein B AM457_07220 PF13411 MerR HTH family regulatory protein AM457_07225 PF03960 ArsC family AM457_07230 PF01022 Bacterial regulatory protein, arsR family AM457_07240 PF01758 Sodium Bile acid symporter family AM457_07245 PF03358 NADPH-dependent FMN reductase AM457_07250 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_07280 PF07690 Major Facilitator Superfamily AM457_07290 PF00892 EamA-like transporter family AM457_07295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM457_07295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM457_07300 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AM457_07305 PF02233 NAD(P) transhydrogenase beta subunit AM457_07310 PF00106 short chain dehydrogenase AM457_07320 PF01261 Xylose isomerase-like TIM barrel AM457_07325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM457_07325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM457_07330 PF00378 Enoyl-CoA hydratase/isomerase AM457_07335 PF00072 Response regulator receiver domain AM457_07335 PF00672 HAMP domain AM457_07335 PF01627 Hpt domain AM457_07335 PF00512 His Kinase A (phospho-acceptor) domain AM457_07335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_07335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM457_07340 PF00291 Pyridoxal-phosphate dependent enzyme AM457_07350 PF05958 tRNA (Uracil-5-)-methyltransferase AM457_07355 PF13291 ACT domain AM457_07355 PF04607 Region found in RelA / SpoT proteins AM457_07355 PF02824 TGS domain AM457_07365 PF03819 MazG nucleotide pyrophosphohydrolase domain AM457_07375 PF01743 Poly A polymerase head domain AM457_07375 PF12626 Polymerase A arginine-rich C-terminus AM457_07375 PF12627 Probable RNA and SrmB- binding site of polymerase A AM457_07380 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM457_07385 PF02548 Ketopantoate hydroxymethyltransferase AM457_07390 PF02569 Pantoate-beta-alanine ligase AM457_07395 PF03668 P-loop ATPase protein family AM457_07400 PF00381 PTS HPr component phosphorylation site AM457_07405 PF04751 Protein of unknown function (DUF615) AM457_07410 PF00501 AMP-binding enzyme AM457_07410 PF13193 AMP-binding enzyme C-terminal domain AM457_07415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM457_07415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM457_07415 PF02824 TGS domain AM457_07415 PF03129 Anticodon binding domain AM457_07420 PF00707 Translation initiation factor IF-3, C-terminal domain AM457_07420 PF05198 Translation initiation factor IF-3, N-terminal domain AM457_07425 PF02798 Glutathione S-transferase, N-terminal domain AM457_07425 PF00043 Glutathione S-transferase, C-terminal domain AM457_07430 PF09335 SNARE associated Golgi protein AM457_07435 PF07690 Major Facilitator Superfamily AM457_07440 PF01632 Ribosomal protein L35 AM457_07445 PF00453 Ribosomal protein L20 AM457_07465 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM457_07465 PF01409 tRNA synthetases class II core domain (F) AM457_07470 PF03483 B3/4 domain AM457_07470 PF03484 tRNA synthetase B5 domain AM457_07470 PF03147 Ferredoxin-fold anticodon binding domain AM457_07470 PF01588 Putative tRNA binding domain AM457_07470 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM457_07475 PF00216 Bacterial DNA-binding protein AM457_07490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM457_07490 PF07498 Rho termination factor, N-terminal domain AM457_07490 PF07497 Rho termination factor, RNA-binding domain AM457_07495 PF00085 Thioredoxin AM457_07500 PF02541 Ppx/GppA phosphatase family AM457_07505 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM457_07510 PF09179 TilS substrate binding domain AM457_07510 PF01171 PP-loop family AM457_07510 PF11734 TilS substrate C-terminal domain AM457_07515 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM457_07515 PF03807 NADP oxidoreductase coenzyme F420-dependent AM457_07520 PF02325 YGGT family AM457_07525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM457_07525 PF01367 5'-3' exonuclease, C-terminal SAM fold AM457_07525 PF00476 DNA polymerase family A AM457_07525 PF01612 3'-5' exonuclease AM457_07545 PF00437 Type II/IV secretion system protein AM457_07550 PF02566 OsmC-like protein AM457_07555 PF01047 MarR family AM457_07565 PF00795 Carbon-nitrogen hydrolase AM457_07610 PF04963 Sigma-54 factor, core binding domain AM457_07610 PF00309 Sigma-54 factor, Activator interacting domain (AID) AM457_07610 PF04552 Sigma-54, DNA binding domain AM457_07615 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM457_07620 PF01722 BolA-like protein AM457_07625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM457_07630 PF01634 ATP phosphoribosyltransferase AM457_07635 PF00815 Histidinol dehydrogenase AM457_07640 PF00155 Aminotransferase class I and II AM457_07645 PF00425 chorismate binding enzyme AM457_07645 PF04715 Anthranilate synthase component I, N terminal region AM457_07685 PF00293 NUDIX domain AM457_07690 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_07695 PF00814 Glycoprotease family AM457_07700 PF04445 Putative SAM-dependent methyltransferase AM457_07710 PF00756 Putative esterase AM457_07720 PF00834 Ribulose-phosphate 3 epimerase family AM457_07750 PF05275 Copper resistance protein B precursor (CopB) AM457_07760 PF00893 Small Multidrug Resistance protein AM457_07765 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM457_07765 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM457_07770 PF01960 ArgJ family AM457_07775 PF02445 Quinolinate synthetase A protein AM457_07800 PF00962 Adenosine/AMP deaminase AM457_07805 PF00107 Zinc-binding dehydrogenase AM457_07805 PF08240 Alcohol dehydrogenase GroES-like domain AM457_07810 PF03466 LysR substrate binding domain AM457_07810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_07815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_07815 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_07815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_07820 PF07690 Major Facilitator Superfamily AM457_07825 PF02515 CoA-transferase family III AM457_07835 PF00890 FAD binding domain AM457_07835 PF14537 Cytochrome c3 AM457_07840 PF03466 LysR substrate binding domain AM457_07840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_07850 PF07690 Major Facilitator Superfamily AM457_07860 PF03466 LysR substrate binding domain AM457_07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_07870 PF01546 Peptidase family M20/M25/M40 AM457_07870 PF07687 Peptidase dimerisation domain AM457_07875 PF12833 Helix-turn-helix domain AM457_07875 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AM457_07885 PF01810 LysE type translocator AM457_07890 PF03466 LysR substrate binding domain AM457_07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_07900 PF08267 Cobalamin-independent synthase, N-terminal domain AM457_07900 PF01717 Cobalamin-independent synthase, Catalytic domain AM457_07905 PF01613 Flavin reductase like domain AM457_07930 PF17074 Darcynin, domain of unknown function AM457_07945 PF00268 Ribonucleotide reductase, small chain AM457_07955 PF03477 ATP cone domain AM457_07955 PF02867 Ribonucleotide reductase, barrel domain AM457_07955 PF00317 Ribonucleotide reductase, all-alpha domain AM457_07960 PF00072 Response regulator receiver domain AM457_07960 PF00486 Transcriptional regulatory protein, C terminal AM457_07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_07965 PF00672 HAMP domain AM457_07965 PF00512 His Kinase A (phospho-acceptor) domain AM457_07975 PF17151 Periplasmic sensor domain AM457_07975 PF00990 Diguanylate cyclase, GGDEF domain AM457_07980 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM457_07985 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM457_07990 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM457_07990 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM457_08000 PF10531 SLBB domain AM457_08000 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM457_08000 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM457_08005 PF00384 Molybdopterin oxidoreductase AM457_08005 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM457_08005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM457_08010 PF00146 NADH dehydrogenase AM457_08015 PF12838 4Fe-4S dicluster domain AM457_08020 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM457_08025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM457_08030 PF00361 Proton-conducting membrane transporter AM457_08030 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM457_08035 PF00361 Proton-conducting membrane transporter AM457_08040 PF00361 Proton-conducting membrane transporter AM457_08050 PF00313 'Cold-shock' DNA-binding domain AM457_08055 PF03466 LysR substrate binding domain AM457_08055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_08060 PF00970 Oxidoreductase FAD-binding domain AM457_08060 PF00175 Oxidoreductase NAD-binding domain AM457_08075 PF05552 Conserved TM helix AM457_08090 PF00291 Pyridoxal-phosphate dependent enzyme AM457_08095 PF13533 Biotin-lipoyl like AM457_08120 PF09334 tRNA synthetases class I (M) AM457_08120 PF01588 Putative tRNA binding domain AM457_08130 PF10609 NUBPL iron-transfer P-loop NTPase AM457_08140 PF01048 Phosphorylase superfamily AM457_08155 PF00692 dUTPase AM457_08190 PF01207 Dihydrouridine synthase (Dus) AM457_08200 PF02978 Signal peptide binding domain AM457_08200 PF02881 SRP54-type protein, helical bundle domain AM457_08200 PF00448 SRP54-type protein, GTPase domain AM457_08205 PF03309 Type III pantothenate kinase AM457_08215 PF01925 Sulfite exporter TauE/SafE AM457_08225 PF06470 SMC proteins Flexible Hinge Domain AM457_08225 PF02463 RecF/RecN/SMC N terminal domain AM457_08235 PF03120 NAD-dependent DNA ligase OB-fold domain AM457_08235 PF00533 BRCA1 C Terminus (BRCT) domain AM457_08235 PF01653 NAD-dependent DNA ligase adenylation domain AM457_08235 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM457_08235 PF12826 Helix-hairpin-helix motif AM457_08240 PF00210 Ferritin-like domain AM457_08245 PF07690 Major Facilitator Superfamily AM457_08250 PF00982 Glycosyltransferase family 20 AM457_08255 PF02358 Trehalose-phosphatase AM457_08260 PF12697 Alpha/beta hydrolase family AM457_08260 PF08241 Methyltransferase domain AM457_08265 PF06968 Biotin and Thiamin Synthesis associated domain AM457_08265 PF00202 Aminotransferase class-III AM457_08265 PF04055 Radical SAM superfamily AM457_08270 PF00155 Aminotransferase class I and II AM457_08285 PF01479 S4 domain AM457_08285 PF00849 RNA pseudouridylate synthase AM457_08290 PF04079 Segregation and condensation complex subunit ScpB AM457_08295 PF02616 Segregation and condensation protein ScpA AM457_08300 PF01300 Telomere recombination AM457_08305 PF04315 Elongation factor P hydroxylase AM457_08310 PF02620 Large ribosomal RNA subunit accumulation protein YceD AM457_08315 PF01783 Ribosomal L32p protein family AM457_08320 PF00698 Acyl transferase domain AM457_08330 PF00550 Phosphopantetheine attachment site AM457_08335 PF01476 LysM domain AM457_08335 PF04972 BON domain AM457_08340 PF08543 Phosphomethylpyrimidine kinase AM457_08340 PF03070 TENA/THI-4/PQQC family AM457_08340 PF02581 Thiamine monophosphate synthase AM457_08350 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM457_08365 PF02261 Aspartate decarboxylase AM457_08370 PF01195 Peptidyl-tRNA hydrolase AM457_08375 PF01386 Ribosomal L25p family AM457_08380 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM457_08380 PF14572 Phosphoribosyl synthetase-associated domain AM457_08405 PF00288 GHMP kinases N terminal domain AM457_08405 PF08544 GHMP kinases C terminal AM457_08410 PF03550 Outer membrane lipoprotein LolB AM457_08420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM457_08420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM457_08420 PF01488 Shikimate / quinate 5-dehydrogenase AM457_08425 PF08278 DNA primase DnaG DnaB-binding AM457_08425 PF08275 DNA primase catalytic core, N-terminal domain AM457_08425 PF01807 CHC2 zinc finger AM457_08425 PF10410 DnaB-helicase binding domain of primase AM457_08430 PF13525 Outer membrane lipoprotein AM457_08435 PF01479 S4 domain AM457_08435 PF00849 RNA pseudouridylate synthase AM457_08445 PF03358 NADPH-dependent FMN reductase AM457_08450 PF01668 SmpB protein AM457_08455 PF01467 Cytidylyltransferase-like AM457_08460 PF00037 4Fe-4S binding domain AM457_08480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_08480 PF03466 LysR substrate binding domain AM457_08485 PF00180 Isocitrate/isopropylmalate dehydrogenase AM457_08490 PF02028 BCCT, betaine/carnitine/choline family transporter AM457_08495 PF07859 alpha/beta hydrolase fold AM457_08500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM457_08500 PF00355 Rieske [2Fe-2S] domain AM457_08505 PF00171 Aldehyde dehydrogenase family AM457_08510 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_08510 PF00970 Oxidoreductase FAD-binding domain AM457_08510 PF00175 Oxidoreductase NAD-binding domain AM457_08525 PF02540 NAD synthase AM457_08525 PF00795 Carbon-nitrogen hydrolase AM457_08535 PF05726 Pirin C-terminal cupin domain AM457_08535 PF02678 Pirin AM457_08545 PF02801 Beta-ketoacyl synthase, C-terminal domain AM457_08545 PF00109 Beta-ketoacyl synthase, N-terminal domain AM457_08555 PF00164 Ribosomal protein S12/S23 AM457_08560 PF00177 Ribosomal protein S7p/S5e AM457_08565 PF03764 Elongation factor G, domain IV AM457_08565 PF03144 Elongation factor Tu domain 2 AM457_08565 PF00009 Elongation factor Tu GTP binding domain AM457_08565 PF14492 Elongation Factor G, domain II AM457_08565 PF00679 Elongation factor G C-terminus AM457_08570 PF00009 Elongation factor Tu GTP binding domain AM457_08570 PF03143 Elongation factor Tu C-terminal domain AM457_08570 PF03144 Elongation factor Tu domain 2 AM457_08585 PF00583 Acetyltransferase (GNAT) family AM457_08590 PF04377 Arginine-tRNA-protein transferase, C terminus AM457_08590 PF04376 Arginine-tRNA-protein transferase, N terminus AM457_08595 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM457_08600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_08605 PF01580 FtsK/SpoIIIE family AM457_08605 PF09397 Ftsk gamma domain AM457_08605 PF17854 FtsK alpha domain AM457_08605 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AM457_08610 PF01810 LysE type translocator AM457_08620 PF03776 Septum formation topological specificity factor MinE AM457_08625 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM457_08630 PF03775 Septum formation inhibitor MinC, C-terminal domain AM457_08640 PF01553 Acyltransferase AM457_08645 PF00691 OmpA family AM457_08645 PF13488 Glycine zipper AM457_08650 PF00580 UvrD/REP helicase N-terminal domain AM457_08650 PF13361 UvrD-like helicase C-terminal domain AM457_08655 PF00692 dUTPase AM457_08660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM457_08660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM457_08660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM457_08660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM457_08665 PF00696 Amino acid kinase family AM457_08675 PF13230 Glutamine amidotransferases class-II AM457_08680 PF01814 Hemerythrin HHE cation binding domain AM457_08695 PF03658 RnfH family Ubiquitin AM457_08700 PF04355 SmpA / OmlA family AM457_08705 PF01475 Ferric uptake regulator family AM457_08710 PF00437 Type II/IV secretion system protein AM457_08715 PF00437 Type II/IV secretion system protein AM457_08720 PF01168 Alanine racemase, N-terminal domain AM457_08730 PF12320 Type 5 capsule protein repressor C-terminal domain AM457_08730 PF00149 Calcineurin-like phosphoesterase AM457_08750 PF08338 Domain of unknown function (DUF1731) AM457_08750 PF01370 NAD dependent epimerase/dehydratase family AM457_08755 PF01266 FAD dependent oxidoreductase AM457_08760 PF00490 Delta-aminolevulinic acid dehydratase AM457_08765 PF03061 Thioesterase superfamily AM457_08770 PF13533 Biotin-lipoyl like AM457_08775 PF07690 Major Facilitator Superfamily AM457_08790 PF02384 N-6 DNA Methylase AM457_08805 PF12102 Domain of unknown function (DUF3578) AM457_08805 PF07728 AAA domain (dynein-related subfamily) AM457_08835 PF00083 Sugar (and other) transporter AM457_08840 PF00701 Dihydrodipicolinate synthetase family AM457_08850 PF08281 Sigma-70, region 4 AM457_08850 PF04542 Sigma-70 region 2 AM457_08860 PF07715 TonB-dependent Receptor Plug Domain AM457_08860 PF00593 TonB dependent receptor AM457_08880 PF01126 Heme oxygenase AM457_08905 PF13520 Amino acid permease AM457_08910 PF02574 Homocysteine S-methyltransferase AM457_08920 PF06039 Malate:quinone oxidoreductase (Mqo) AM457_08925 PF00732 GMC oxidoreductase AM457_08925 PF05199 GMC oxidoreductase AM457_08930 PF00171 Aldehyde dehydrogenase family AM457_08935 PF13977 BetI-type transcriptional repressor, C-terminal AM457_08935 PF00440 Bacterial regulatory proteins, tetR family AM457_08940 PF02028 BCCT, betaine/carnitine/choline family transporter AM457_08945 PF02028 BCCT, betaine/carnitine/choline family transporter AM457_08955 PF03061 Thioesterase superfamily AM457_08965 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM457_08965 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM457_08970 PF00375 Sodium:dicarboxylate symporter family AM457_08975 PF07152 YaeQ protein AM457_08980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM457_08985 PF14883 Hypothetical glycosyl hydrolase family 13 AM457_08985 PF01522 Polysaccharide deacetylase AM457_08990 PF00535 Glycosyl transferase family 2 AM457_09000 PF00378 Enoyl-CoA hydratase/isomerase AM457_09015 PF09339 IclR helix-turn-helix domain AM457_09015 PF01614 Bacterial transcriptional regulator AM457_09020 PF00355 Rieske [2Fe-2S] domain AM457_09030 PF00355 Rieske [2Fe-2S] domain AM457_09040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM457_09045 PF14759 Reductase C-terminal AM457_09045 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_09050 PF07690 Major Facilitator Superfamily AM457_09060 PF12697 Alpha/beta hydrolase family AM457_09070 PF01958 Domain of unknown function DUF108 AM457_09070 PF03447 Homoserine dehydrogenase, NAD binding domain AM457_09075 PF00171 Aldehyde dehydrogenase family AM457_09080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM457_09080 PF00205 Thiamine pyrophosphate enzyme, central domain AM457_09080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM457_09090 PF07690 Major Facilitator Superfamily AM457_09095 PF01327 Polypeptide deformylase AM457_09100 PF04960 Glutaminase AM457_09105 PF12833 Helix-turn-helix domain AM457_09105 PF02311 AraC-like ligand binding domain AM457_09110 PF07690 Major Facilitator Superfamily AM457_09115 PF01263 Aldose 1-epimerase AM457_09130 PF03466 LysR substrate binding domain AM457_09130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_09140 PF07690 Major Facilitator Superfamily AM457_09145 PF00456 Transketolase, thiamine diphosphate binding domain AM457_09150 PF02780 Transketolase, C-terminal domain AM457_09150 PF02779 Transketolase, pyrimidine binding domain AM457_09160 PF00809 Pterin binding enzyme AM457_09160 PF02574 Homocysteine S-methyltransferase AM457_09160 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM457_09160 PF02607 B12 binding domain AM457_09160 PF02310 B12 binding domain AM457_09165 PF01384 Phosphate transporter family AM457_09170 PF00291 Pyridoxal-phosphate dependent enzyme AM457_09190 PF03781 Sulfatase-modifying factor enzyme 1 AM457_09195 PF00884 Sulfatase AM457_09205 PF01521 Iron-sulphur cluster biosynthesis AM457_09205 PF01106 NifU-like domain AM457_09210 PF07715 TonB-dependent Receptor Plug Domain AM457_09210 PF00593 TonB dependent receptor AM457_09220 PF00561 alpha/beta hydrolase fold AM457_09225 PF00484 Carbonic anhydrase AM457_09230 PF13472 GDSL-like Lipase/Acylhydrolase family AM457_09235 PF00005 ABC transporter AM457_09245 PF01694 Rhomboid family AM457_09250 PF00912 Transglycosylase AM457_09255 PF13090 Polyphosphate kinase C-terminal domain 2 AM457_09255 PF13089 Polyphosphate kinase N-terminal domain AM457_09255 PF17941 Polyphosphate kinase C-terminal domain 1 AM457_09255 PF02503 Polyphosphate kinase middle domain AM457_09270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_09270 PF03466 LysR substrate binding domain AM457_09275 PF00561 alpha/beta hydrolase fold AM457_09280 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_09280 PF18113 Rubredoxin binding C-terminal domain AM457_09285 PF00301 Rubredoxin AM457_09300 PF00152 tRNA synthetases class II (D, K and N) AM457_09300 PF01336 OB-fold nucleic acid binding domain AM457_09305 PF14052 Capsule assembly protein Wzi AM457_09315 PF01507 Phosphoadenosine phosphosulfate reductase family AM457_09320 PF00009 Elongation factor Tu GTP binding domain AM457_09335 PF03600 Citrate transporter AM457_09345 PF03471 Transporter associated domain AM457_09345 PF01595 Cyclin M transmembrane N-terminal domain AM457_09345 PF00571 CBS domain AM457_09350 PF03466 LysR substrate binding domain AM457_09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_09355 PF00463 Isocitrate lyase family AM457_09370 PF01774 UreD urease accessory protein AM457_09375 PF00547 Urease, gamma subunit AM457_09380 PF00699 Urease beta subunit AM457_09385 PF00449 Urease alpha-subunit, N-terminal domain AM457_09385 PF01979 Amidohydrolase family AM457_09390 PF05194 UreE urease accessory protein, C-terminal domain AM457_09390 PF02814 UreE urease accessory protein, N-terminal domain AM457_09395 PF01730 UreF AM457_09400 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM457_09415 PF00905 Penicillin binding protein transpeptidase domain AM457_09415 PF03717 Penicillin-binding Protein dimerisation domain AM457_09430 PF05191 Adenylate kinase, active site lid AM457_09440 PF10576 Iron-sulfur binding domain of endonuclease III AM457_09440 PF00730 HhH-GPD superfamily base excision DNA repair protein AM457_09440 PF00633 Helix-hairpin-helix motif AM457_09445 PF04060 Putative Fe-S cluster AM457_09450 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM457_09450 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM457_09460 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM457_09465 PF02590 Predicted SPOUT methyltransferase AM457_09470 PF02190 ATP-dependent protease La (LON) substrate-binding domain AM457_09470 PF05362 Lon protease (S16) C-terminal proteolytic domain AM457_09470 PF00004 ATPase family associated with various cellular activities (AAA) AM457_09475 PF05658 Head domain of trimeric autotransporter adhesin AM457_09475 PF13018 Extended Signal Peptide of Type V secretion system AM457_09475 PF03895 YadA-like membrane anchor domain AM457_09475 PF05662 Coiled stalk of trimeric autotransporter adhesin AM457_09485 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM457_09760 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AM457_09795 PF01476 LysM domain AM457_09795 PF08525 Opacity-associated protein A N-terminal motif AM457_09795 PF01551 Peptidase family M23 AM457_09850 PF00884 Sulfatase AM457_09850 PF08019 Phosphoethanolamine transferase EptA/EptB AM457_09885 PF05195 Aminopeptidase P, N-terminal domain AM457_09885 PF00557 Metallopeptidase family M24 AM457_09890 PF01494 FAD binding domain AM457_09895 PF01494 FAD binding domain AM457_09905 PF13411 MerR HTH family regulatory protein AM457_09915 PF01810 LysE type translocator AM457_09920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_09920 PF03466 LysR substrate binding domain AM457_09930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM457_09935 PF02021 Uncharacterised protein family UPF0102 AM457_09940 PF04972 BON domain AM457_09950 PF09297 NADH pyrophosphatase zinc ribbon domain AM457_09950 PF00293 NUDIX domain AM457_09960 PF00929 Exonuclease AM457_09965 PF01476 LysM domain AM457_09965 PF01464 Transglycosylase SLT domain AM457_09965 PF01476 LysM domain AM457_09965 PF01464 Transglycosylase SLT domain AM457_09970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM457_09975 PF00528 Binding-protein-dependent transport system inner membrane component AM457_09980 PF00528 Binding-protein-dependent transport system inner membrane component AM457_09980 PF12911 N-terminal TM domain of oligopeptide transport permease C AM457_09985 PF00005 ABC transporter AM457_09985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM457_09990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM457_09990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_10030 PF07715 TonB-dependent Receptor Plug Domain AM457_10030 PF00593 TonB dependent receptor AM457_10040 PF00929 Exonuclease AM457_10045 PF01979 Amidohydrolase family AM457_10050 PF00360 Phytochrome region AM457_10050 PF00990 Diguanylate cyclase, GGDEF domain AM457_10050 PF01590 GAF domain AM457_10050 PF00563 EAL domain AM457_10055 PF00764 Arginosuccinate synthase AM457_10060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_10060 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM457_10070 PF03180 NLPA lipoprotein AM457_10080 PF16671 Actin cross-linking domain AM457_10080 PF04717 Type VI secretion system, phage-baseplate injector AM457_10085 PF03527 RHS protein AM457_10085 PF05593 RHS Repeat AM457_10125 PF00324 Amino acid permease AM457_10130 PF01266 FAD dependent oxidoreductase AM457_10135 PF00324 Amino acid permease AM457_10145 PF07729 FCD domain AM457_10145 PF00392 Bacterial regulatory proteins, gntR family AM457_10155 PF00171 Aldehyde dehydrogenase family AM457_10165 PF00202 Aminotransferase class-III AM457_10175 PF13610 DDE domain AM457_10195 PF02522 Aminoglycoside 3-N-acetyltransferase AM457_10230 PF13610 DDE domain AM457_10235 PF02678 Pirin AM457_10235 PF17954 Quercetinase C-terminal cupin domain AM457_10245 PF00106 short chain dehydrogenase AM457_10250 PF00743 Flavin-binding monooxygenase-like AM457_10260 PF00860 Permease family AM457_10265 PF00962 Adenosine/AMP deaminase AM457_10270 PF01292 Prokaryotic cytochrome b561 AM457_10280 PF01351 Ribonuclease HII AM457_10285 PF02599 Global regulator protein family AM457_10290 PF00696 Amino acid kinase family AM457_10290 PF13840 ACT domain AM457_10290 PF01842 ACT domain AM457_10295 PF02272 DHHA1 domain AM457_10295 PF01411 tRNA synthetases class II (A) AM457_10295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM457_10300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM457_10300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM457_10310 PF13393 Histidyl-tRNA synthetase AM457_10315 PF00709 Adenylosuccinate synthetase AM457_10330 PF00248 Aldo/keto reductase family AM457_10335 PF13545 Crp-like helix-turn-helix domain AM457_10335 PF00027 Cyclic nucleotide-binding domain AM457_10350 PF02566 OsmC-like protein AM457_10365 PF02861 Clp amino terminal domain, pathogenicity island component AM457_10365 PF17871 AAA lid domain AM457_10365 PF07724 AAA domain (Cdc48 subfamily) AM457_10365 PF10431 C-terminal, D2-small domain, of ClpB protein AM457_10365 PF00004 ATPase family associated with various cellular activities (AAA) AM457_10380 PF01170 Putative RNA methylase family UPF0020 AM457_10380 PF10672 S-adenosylmethionine-dependent methyltransferase AM457_10380 PF02926 THUMP domain AM457_10390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM457_10390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM457_10395 PF01979 Amidohydrolase family AM457_10400 PF13488 Glycine zipper AM457_10400 PF00691 OmpA family AM457_10410 PF13417 Glutathione S-transferase, N-terminal domain AM457_10410 PF00043 Glutathione S-transferase, C-terminal domain AM457_10415 PF02390 Putative methyltransferase AM457_10425 PF00043 Glutathione S-transferase, C-terminal domain AM457_10425 PF02798 Glutathione S-transferase, N-terminal domain AM457_10435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_10435 PF13192 Thioredoxin domain AM457_10455 PF00578 AhpC/TSA family AM457_10455 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM457_10460 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AM457_10460 PF00270 DEAD/DEAH box helicase AM457_10460 PF04408 Helicase associated domain (HA2) AM457_10460 PF11898 Domain of unknown function (DUF3418) AM457_10460 PF00271 Helicase conserved C-terminal domain AM457_10465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM457_10465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM457_10475 PF07690 Major Facilitator Superfamily AM457_10480 PF03594 Benzoate membrane transport protein AM457_10485 PF00106 short chain dehydrogenase AM457_10490 PF00175 Oxidoreductase NAD-binding domain AM457_10490 PF00970 Oxidoreductase FAD-binding domain AM457_10490 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_10495 PF00866 Ring hydroxylating beta subunit AM457_10500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM457_10500 PF00355 Rieske [2Fe-2S] domain AM457_10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_10505 PF03466 LysR substrate binding domain AM457_10510 PF00403 Heavy-metal-associated domain AM457_10515 PF00403 Heavy-metal-associated domain AM457_10520 PF00376 MerR family regulatory protein AM457_10520 PF09278 MerR, DNA binding AM457_10560 PF13742 OB-fold nucleic acid binding domain AM457_10560 PF02601 Exonuclease VII, large subunit AM457_10595 PF01810 LysE type translocator AM457_10600 PF00313 'Cold-shock' DNA-binding domain AM457_10610 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM457_10610 PF03807 NADP oxidoreductase coenzyme F420-dependent AM457_10640 PF07690 Major Facilitator Superfamily AM457_10645 PF01638 HxlR-like helix-turn-helix AM457_10725 PF06381 Protein of unknown function (DUF1073) AM457_10745 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) AM457_10765 PF12708 Pectate lyase superfamily protein AM457_10765 PF13229 Right handed beta helix region AM457_10810 PF01406 tRNA synthetases class I (C) catalytic domain AM457_10810 PF09190 DALR domain AM457_10815 PF01380 SIS domain AM457_10815 PF00571 CBS domain AM457_10830 PF03968 OstA-like protein AM457_10835 PF00005 ABC transporter AM457_10835 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM457_10845 PF00664 ABC transporter transmembrane region AM457_10845 PF00005 ABC transporter AM457_10845 PF03412 Peptidase C39 family AM457_10855 PF01205 Uncharacterized protein family UPF0029 AM457_10860 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_10870 PF01596 O-methyltransferase AM457_10880 PF00037 4Fe-4S binding domain AM457_10880 PF11953 Domain of unknown function (DUF3470) AM457_10890 PF05192 MutS domain III AM457_10890 PF00488 MutS domain V AM457_10890 PF05190 MutS family domain IV AM457_10890 PF01624 MutS domain I AM457_10890 PF05188 MutS domain II AM457_10895 PF01037 Lrp/AsnC ligand binding domain AM457_10915 PF13610 DDE domain AM457_10925 PF02371 Transposase IS116/IS110/IS902 family AM457_10925 PF01548 Transposase AM457_10930 PF01526 Tn3 transposase DDE domain AM457_10930 PF13700 Domain of unknown function (DUF4158) AM457_10935 PF00239 Resolvase, N terminal domain AM457_10935 PF02796 Helix-turn-helix domain of resolvase AM457_10945 PF00589 Phage integrase family AM457_10945 PF13495 Phage integrase, N-terminal SAM-like domain AM457_10950 PF06442 R67 dihydrofolate reductase AM457_10955 PF13427 Domain of unknown function (DUF4111) AM457_10955 PF01909 Nucleotidyltransferase domain AM457_10960 PF00893 Small Multidrug Resistance protein AM457_10965 PF00809 Pterin binding enzyme AM457_10980 PF01695 IstB-like ATP binding protein AM457_10985 PF00665 Integrase core domain AM457_10995 PF13610 DDE domain AM457_11005 PF00596 Class II Aldolase and Adducin N-terminal domain AM457_11010 PF17042 Nucleotide-binding C-terminal domain AM457_11010 PF07005 Sugar-binding N-terminal domain AM457_11015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM457_11015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM457_11020 PF08220 DeoR-like helix-turn-helix domain AM457_11020 PF00455 DeoR C terminal sensor domain AM457_11035 PF02463 RecF/RecN/SMC N terminal domain AM457_11040 PF13610 DDE domain AM457_11055 PF01389 OmpA-like transmembrane domain AM457_11055 PF00691 OmpA family AM457_11070 PF07724 AAA domain (Cdc48 subfamily) AM457_11070 PF10431 C-terminal, D2-small domain, of ClpB protein AM457_11070 PF00004 ATPase family associated with various cellular activities (AAA) AM457_11070 PF17871 AAA lid domain AM457_11100 PF03466 LysR substrate binding domain AM457_11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_11110 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM457_11115 PF07690 Major Facilitator Superfamily AM457_11130 PF02677 Epoxyqueuosine reductase QueH AM457_11140 PF09278 MerR, DNA binding AM457_11140 PF00376 MerR family regulatory protein AM457_11155 PF00701 Dihydrodipicolinate synthetase family AM457_11165 PF00392 Bacterial regulatory proteins, gntR family AM457_11170 PF05544 Proline racemase AM457_11175 PF01266 FAD dependent oxidoreductase AM457_11185 PF04324 BFD-like [2Fe-2S] binding domain AM457_11185 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_11195 PF00083 Sugar (and other) transporter AM457_11200 PF00171 Aldehyde dehydrogenase family AM457_11205 PF13520 Amino acid permease AM457_11210 PF03315 Serine dehydratase beta chain AM457_11210 PF03313 Serine dehydratase alpha chain AM457_11215 PF01575 MaoC like domain AM457_11215 PF00171 Aldehyde dehydrogenase family AM457_11220 PF05138 Phenylacetic acid catabolic protein AM457_11225 PF06243 Phenylacetic acid degradation B AM457_11230 PF05138 Phenylacetic acid catabolic protein AM457_11235 PF01883 Iron-sulfur cluster assembly protein AM457_11240 PF00175 Oxidoreductase NAD-binding domain AM457_11240 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_11240 PF00970 Oxidoreductase FAD-binding domain AM457_11245 PF00378 Enoyl-CoA hydratase/isomerase AM457_11250 PF00378 Enoyl-CoA hydratase/isomerase AM457_11255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM457_11255 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM457_11255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM457_11260 PF00108 Thiolase, N-terminal domain AM457_11260 PF02803 Thiolase, C-terminal domain AM457_11265 PF14535 AMP-binding enzyme C-terminal domain AM457_11265 PF00501 AMP-binding enzyme AM457_11270 PF07848 PaaX-like protein AM457_11270 PF08223 PaaX-like protein C-terminal domain AM457_11275 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_11280 PF03061 Thioesterase superfamily AM457_11290 PF00271 Helicase conserved C-terminal domain AM457_11290 PF17757 UvrB interaction domain AM457_11290 PF12344 Ultra-violet resistance protein B AM457_11290 PF02151 UvrB/uvrC motif AM457_11290 PF04851 Type III restriction enzyme, res subunit AM457_11330 PF00313 'Cold-shock' DNA-binding domain AM457_11340 PF06719 AraC-type transcriptional regulator N-terminus AM457_11340 PF12833 Helix-turn-helix domain AM457_11350 PF13610 DDE domain AM457_11360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_11360 PF03466 LysR substrate binding domain AM457_11365 PF01636 Phosphotransferase enzyme family AM457_11370 PF13610 DDE domain AM457_11380 PF01636 Phosphotransferase enzyme family AM457_11385 PF13610 DDE domain AM457_11420 PF12832 MFS_1 like family AM457_11430 PF02785 Biotin carboxylase C-terminal domain AM457_11430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM457_11430 PF00289 Biotin carboxylase, N-terminal domain AM457_11435 PF00364 Biotin-requiring enzyme AM457_11440 PF01220 Dehydroquinase class II AM457_11445 PF13438 Domain of unknown function (DUF4113) AM457_11445 PF11799 impB/mucB/samB family C-terminal domain AM457_11445 PF00817 impB/mucB/samB family AM457_11455 PF00005 ABC transporter AM457_11460 PF00072 Response regulator receiver domain AM457_11460 PF00486 Transcriptional regulatory protein, C terminal AM457_11470 PF04324 BFD-like [2Fe-2S] binding domain AM457_11470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM457_11470 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM457_11470 PF13806 Rieske-like [2Fe-2S] domain AM457_11470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM457_11470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_11475 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_11475 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM457_11475 PF04324 BFD-like [2Fe-2S] binding domain AM457_11475 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM457_11475 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM457_11480 PF00384 Molybdopterin oxidoreductase AM457_11480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM457_11480 PF01568 Molydopterin dinucleotide binding domain AM457_11480 PF04324 BFD-like [2Fe-2S] binding domain AM457_11485 PF12804 MobA-like NTP transferase domain AM457_11490 PF00384 Molybdopterin oxidoreductase AM457_11490 PF01568 Molydopterin dinucleotide binding domain AM457_11490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM457_11495 PF04055 Radical SAM superfamily AM457_11495 PF06463 Molybdenum Cofactor Synthesis C AM457_11505 PF02391 MoaE protein AM457_11510 PF01967 MoaC family AM457_11510 PF00994 Probable molybdopterin binding domain AM457_11515 PF00994 Probable molybdopterin binding domain AM457_11515 PF03453 MoeA N-terminal region (domain I and II) AM457_11515 PF03454 MoeA C-terminal region (domain IV) AM457_11520 PF01638 HxlR-like helix-turn-helix AM457_11525 PF00392 Bacterial regulatory proteins, gntR family AM457_11525 PF00155 Aminotransferase class I and II AM457_11530 PF00892 EamA-like transporter family AM457_11550 PF02635 DsrE/DsrF-like family AM457_11555 PF16363 GDP-mannose 4,6 dehydratase AM457_11560 PF00206 Lyase AM457_11560 PF10415 Fumarase C C-terminus AM457_11585 PF01266 FAD dependent oxidoreductase AM457_11595 PF02542 YgbB family AM457_11605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM457_11605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM457_11610 PF00440 Bacterial regulatory proteins, tetR family AM457_11615 PF02954 Bacterial regulatory protein, Fis family AM457_11615 PF00158 Sigma-54 interaction domain AM457_11615 PF00072 Response regulator receiver domain AM457_11620 PF00989 PAS fold AM457_11620 PF00512 His Kinase A (phospho-acceptor) domain AM457_11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_11630 PF04055 Radical SAM superfamily AM457_11630 PF18693 TRAM domain AM457_11630 PF00919 Uncharacterized protein family UPF0004 AM457_11635 PF00696 Amino acid kinase family AM457_11640 PF01765 Ribosome recycling factor AM457_11645 PF01255 Putative undecaprenyl diphosphate synthase AM457_11655 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM457_11655 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM457_11655 PF13288 DXP reductoisomerase C-terminal domain AM457_11660 PF17820 PDZ domain AM457_11660 PF02163 Peptidase family M50 AM457_11660 PF13180 PDZ domain AM457_11665 PF07244 Surface antigen variable number repeat AM457_11665 PF01103 Surface antigen AM457_11675 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM457_11675 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_11680 PF07977 FabA-like domain AM457_11685 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_11685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AM457_11700 PF02631 RecX family AM457_11705 PF00154 recA bacterial DNA recombination protein AM457_11710 PF01479 S4 domain AM457_11715 PF13419 Haloacid dehalogenase-like hydrolase AM457_11740 PF01037 Lrp/AsnC ligand binding domain AM457_11745 PF00266 Aminotransferase class-V AM457_11750 PF00324 Amino acid permease AM457_11760 PF05922 Peptidase inhibitor I9 AM457_11760 PF00082 Subtilase family AM457_11765 PF01740 STAS domain AM457_11765 PF00916 Sulfate permease family AM457_11770 PF02586 SOS response associated peptidase (SRAP) AM457_11775 PF07995 Glucose / Sorbosone dehydrogenase AM457_11785 PF03707 Bacterial signalling protein N terminal repeat AM457_11785 PF00990 Diguanylate cyclase, GGDEF domain AM457_11785 PF00563 EAL domain AM457_11800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM457_11800 PF02378 Phosphotransferase system, EIIC AM457_11805 PF00294 pfkB family carbohydrate kinase AM457_11810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM457_11810 PF02896 PEP-utilising enzyme, TIM barrel domain AM457_11810 PF05524 PEP-utilising enzyme, N-terminal AM457_11810 PF00381 PTS HPr component phosphorylation site AM457_11810 PF00391 PEP-utilising enzyme, mobile domain AM457_11835 PF05525 Branched-chain amino acid transport protein AM457_11840 PF00557 Metallopeptidase family M24 AM457_11845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_11845 PF03466 LysR substrate binding domain AM457_11855 PF00462 Glutaredoxin AM457_11860 PF00202 Aminotransferase class-III AM457_11865 PF00478 IMP dehydrogenase / GMP reductase domain AM457_11865 PF00571 CBS domain AM457_11890 PF00448 SRP54-type protein, GTPase domain AM457_11890 PF02881 SRP54-type protein, helical bundle domain AM457_11900 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AM457_11910 PF08173 Membrane bound YbgT-like protein AM457_11915 PF02322 Cytochrome bd terminal oxidase subunit II AM457_11920 PF01654 Cytochrome bd terminal oxidase subunit I AM457_11930 PF13936 Helix-turn-helix domain AM457_11930 PF00665 Integrase core domain AM457_11935 PF07290 Protein of unknown function (DUF1449) AM457_11945 PF00294 pfkB family carbohydrate kinase AM457_11950 PF00593 TonB dependent receptor AM457_11950 PF07715 TonB-dependent Receptor Plug Domain AM457_11955 PF08367 Peptidase M16C associated AM457_11955 PF05193 Peptidase M16 inactive domain AM457_11955 PF00675 Insulinase (Peptidase family M16) AM457_11960 PF02253 Phospholipase A1 AM457_11965 PF02386 Cation transport protein AM457_11970 PF02254 TrkA-N domain AM457_11970 PF02080 TrkA-C domain AM457_11975 PF00585 C-terminal regulatory domain of Threonine dehydratase AM457_11975 PF00291 Pyridoxal-phosphate dependent enzyme AM457_11980 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM457_11995 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM457_11995 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM457_12005 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM457_12010 PF07724 AAA domain (Cdc48 subfamily) AM457_12010 PF02861 Clp amino terminal domain, pathogenicity island component AM457_12010 PF17871 AAA lid domain AM457_12010 PF00004 ATPase family associated with various cellular activities (AAA) AM457_12010 PF10431 C-terminal, D2-small domain, of ClpB protein AM457_12015 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AM457_12020 PF00793 DAHP synthetase I family AM457_12035 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM457_12035 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_12065 PF06418 CTP synthase N-terminus AM457_12065 PF00117 Glutamine amidotransferase class-I AM457_12070 PF00793 DAHP synthetase I family AM457_12075 PF00113 Enolase, C-terminal TIM barrel domain AM457_12075 PF03952 Enolase, N-terminal domain AM457_12080 PF04239 Protein of unknown function (DUF421) AM457_12085 PF04977 Septum formation initiator AM457_12090 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM457_12095 PF01144 Coenzyme A transferase AM457_12100 PF01144 Coenzyme A transferase AM457_12105 PF02803 Thiolase, C-terminal domain AM457_12105 PF00108 Thiolase, N-terminal domain AM457_12110 PF10397 Adenylosuccinate lyase C-terminus AM457_12110 PF00206 Lyase AM457_12115 PF00561 alpha/beta hydrolase fold AM457_12120 PF07690 Major Facilitator Superfamily AM457_12125 PF02627 Carboxymuconolactone decarboxylase family AM457_12130 PF00775 Dioxygenase AM457_12130 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AM457_12135 PF00775 Dioxygenase AM457_12140 PF01487 Type I 3-dehydroquinase AM457_12145 PF05048 Periplasmic copper-binding protein (NosD) AM457_12150 PF04966 Carbohydrate-selective porin, OprB family AM457_12155 PF01011 PQQ enzyme repeat AM457_12155 PF13360 PQQ-like domain AM457_12165 PF04143 Sulphur transport AM457_12175 PF00753 Metallo-beta-lactamase superfamily AM457_12180 PF01614 Bacterial transcriptional regulator AM457_12180 PF09339 IclR helix-turn-helix domain AM457_12185 PF03466 LysR substrate binding domain AM457_12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_12190 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_12190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_12190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_12205 PF00106 short chain dehydrogenase AM457_12215 PF07690 Major Facilitator Superfamily AM457_12225 PF01425 Amidase AM457_12230 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM457_12245 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM457_12245 PF00355 Rieske [2Fe-2S] domain AM457_12260 PF00175 Oxidoreductase NAD-binding domain AM457_12260 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_12265 PF01613 Flavin reductase like domain AM457_12270 PF02311 AraC-like ligand binding domain AM457_12270 PF12833 Helix-turn-helix domain AM457_12275 PF07833 Copper amine oxidase N-terminal domain AM457_12275 PF02728 Copper amine oxidase, N3 domain AM457_12275 PF02727 Copper amine oxidase, N2 domain AM457_12275 PF01179 Copper amine oxidase, enzyme domain AM457_12285 PF00171 Aldehyde dehydrogenase family AM457_12290 PF01804 Penicillin amidase AM457_12295 PF12146 Serine aminopeptidase, S33 AM457_12300 PF02803 Thiolase, C-terminal domain AM457_12300 PF00108 Thiolase, N-terminal domain AM457_12305 PF01144 Coenzyme A transferase AM457_12310 PF01144 Coenzyme A transferase AM457_12315 PF00775 Dioxygenase AM457_12315 PF04444 Catechol dioxygenase N terminus AM457_12320 PF02426 Muconolactone delta-isomerase AM457_12325 PF13378 Enolase C-terminal domain-like AM457_12325 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM457_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_12330 PF03466 LysR substrate binding domain AM457_12340 PF07729 FCD domain AM457_12340 PF00392 Bacterial regulatory proteins, gntR family AM457_12345 PF00920 Dehydratase family AM457_12350 PF07690 Major Facilitator Superfamily AM457_12360 PF00171 Aldehyde dehydrogenase family AM457_12370 PF00561 alpha/beta hydrolase fold AM457_12375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_12375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM457_12380 PF00106 short chain dehydrogenase AM457_12390 PF00376 MerR family regulatory protein AM457_12390 PF09278 MerR, DNA binding AM457_12410 PF12706 Beta-lactamase superfamily domain AM457_12415 PF00440 Bacterial regulatory proteins, tetR family AM457_12415 PF08359 YsiA-like protein, C-terminal region AM457_12425 PF00857 Isochorismatase family AM457_12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_12430 PF03466 LysR substrate binding domain AM457_12435 PF07995 Glucose / Sorbosone dehydrogenase AM457_12440 PF00999 Sodium/hydrogen exchanger family AM457_12440 PF02254 TrkA-N domain AM457_12450 PF01546 Peptidase family M20/M25/M40 AM457_12450 PF07687 Peptidase dimerisation domain AM457_12510 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) AM457_12515 PF07690 Major Facilitator Superfamily AM457_12520 PF04909 Amidohydrolase AM457_12535 PF08450 SMP-30/Gluconolactonase/LRE-like region AM457_12545 PF03466 LysR substrate binding domain AM457_12545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_12570 PF01842 ACT domain AM457_12570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM457_12570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM457_12575 PF03737 Aldolase/RraA AM457_12595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_12595 PF00529 HlyD membrane-fusion protein of T1SS AM457_12610 PF00171 Aldehyde dehydrogenase family AM457_12615 PF00920 Dehydratase family AM457_12625 PF03466 LysR substrate binding domain AM457_12625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_12630 PF01370 NAD dependent epimerase/dehydratase family AM457_12635 PF07690 Major Facilitator Superfamily AM457_12640 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM457_12640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM457_12645 PF12833 Helix-turn-helix domain AM457_12645 PF06719 AraC-type transcriptional regulator N-terminus AM457_12650 PF00107 Zinc-binding dehydrogenase AM457_12650 PF08240 Alcohol dehydrogenase GroES-like domain AM457_12660 PF01032 FecCD transport family AM457_12665 PF00005 ABC transporter AM457_12685 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM457_12685 PF14572 Phosphoribosyl synthetase-associated domain AM457_12695 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM457_12710 PF00196 Bacterial regulatory proteins, luxR family AM457_12710 PF03472 Autoinducer binding domain AM457_12715 PF01425 Amidase AM457_12720 PF13533 Biotin-lipoyl like AM457_12725 PF07690 Major Facilitator Superfamily AM457_12750 PF01975 Survival protein SurE AM457_12760 PF13291 ACT domain AM457_12760 PF04607 Region found in RelA / SpoT proteins AM457_12760 PF02824 TGS domain AM457_12820 PF00929 Exonuclease AM457_12820 PF01541 GIY-YIG catalytic domain AM457_12835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM457_12850 PF01494 FAD binding domain AM457_12865 PF04199 Putative cyclase AM457_12880 PF00512 His Kinase A (phospho-acceptor) domain AM457_12880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_12880 PF16527 Two-component sensor protein CpxA, periplasmic domain AM457_12880 PF00672 HAMP domain AM457_12885 PF00486 Transcriptional regulatory protein, C terminal AM457_12885 PF00072 Response regulator receiver domain AM457_12895 PF00529 HlyD membrane-fusion protein of T1SS AM457_12895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_12900 PF00873 AcrB/AcrD/AcrF family AM457_12905 PF02321 Outer membrane efflux protein AM457_12910 PF12146 Serine aminopeptidase, S33 AM457_12915 PF00743 Flavin-binding monooxygenase-like AM457_12920 PF01593 Flavin containing amine oxidoreductase AM457_12935 PF01266 FAD dependent oxidoreductase AM457_12955 PF16970 Type-1 fimbrial protein, A AM457_12960 PF02753 Pili assembly chaperone PapD, C-terminal domain AM457_12960 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM457_12965 PF13953 PapC C-terminal domain AM457_12965 PF13954 PapC N-terminal domain AM457_12965 PF00577 Outer membrane usher protein AM457_12980 PF08240 Alcohol dehydrogenase GroES-like domain AM457_12980 PF00107 Zinc-binding dehydrogenase AM457_12990 PF00199 Catalase AM457_13005 PF13091 PLD-like domain AM457_13025 PF01244 Membrane dipeptidase (Peptidase family M19) AM457_13030 PF04055 Radical SAM superfamily AM457_13030 PF13186 Iron-sulfur cluster-binding domain AM457_13035 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AM457_13040 PF03070 TENA/THI-4/PQQC family AM457_13045 PF12706 Beta-lactamase superfamily domain AM457_13050 PF08042 PqqA family AM457_13060 PF00149 Calcineurin-like phosphoesterase AM457_13070 PF00550 Phosphopantetheine attachment site AM457_13070 PF00857 Isochorismatase family AM457_13075 PF00106 short chain dehydrogenase AM457_13080 PF00005 ABC transporter AM457_13080 PF03459 TOBE domain AM457_13085 PF00528 Binding-protein-dependent transport system inner membrane component AM457_13095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_13095 PF03459 TOBE domain AM457_13100 PF00355 Rieske [2Fe-2S] domain AM457_13100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AM457_13105 PF00866 Ring hydroxylating beta subunit AM457_13110 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_13110 PF00175 Oxidoreductase NAD-binding domain AM457_13110 PF00970 Oxidoreductase FAD-binding domain AM457_13115 PF12833 Helix-turn-helix domain AM457_13115 PF14525 AraC-binding-like domain AM457_13125 PF01613 Flavin reductase like domain AM457_13140 PF01738 Dienelactone hydrolase family AM457_13145 PF07690 Major Facilitator Superfamily AM457_13150 PF12833 Helix-turn-helix domain AM457_13150 PF06719 AraC-type transcriptional regulator N-terminus AM457_13180 PF03466 LysR substrate binding domain AM457_13180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_13185 PF01144 Coenzyme A transferase AM457_13190 PF01144 Coenzyme A transferase AM457_13195 PF02667 Short chain fatty acid transporter AM457_13200 PF02803 Thiolase, C-terminal domain AM457_13200 PF00108 Thiolase, N-terminal domain AM457_13205 PF03466 LysR substrate binding domain AM457_13205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_13210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_13210 PF03466 LysR substrate binding domain AM457_13225 PF00206 Lyase AM457_13225 PF10415 Fumarase C C-terminus AM457_13230 PF07715 TonB-dependent Receptor Plug Domain AM457_13230 PF00593 TonB dependent receptor AM457_13235 PF00083 Sugar (and other) transporter AM457_13250 PF00005 ABC transporter AM457_13255 PF00528 Binding-protein-dependent transport system inner membrane component AM457_13260 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM457_13280 PF02417 Chromate transporter AM457_13285 PF02525 Flavodoxin-like fold AM457_13290 PF01638 HxlR-like helix-turn-helix AM457_13295 PF06445 GyrI-like small molecule binding domain AM457_13295 PF12833 Helix-turn-helix domain AM457_13310 PF01925 Sulfite exporter TauE/SafE AM457_13315 PF04273 Putative phosphatase (DUF442) AM457_13315 PF00753 Metallo-beta-lactamase superfamily AM457_13320 PF04273 Putative phosphatase (DUF442) AM457_13320 PF00753 Metallo-beta-lactamase superfamily AM457_13325 PF02954 Bacterial regulatory protein, Fis family AM457_13325 PF00072 Response regulator receiver domain AM457_13325 PF00158 Sigma-54 interaction domain AM457_13330 PF01062 Bestrophin, RFP-TM, chloride channel AM457_13335 PF08240 Alcohol dehydrogenase GroES-like domain AM457_13335 PF00107 Zinc-binding dehydrogenase AM457_13340 PF00106 short chain dehydrogenase AM457_13345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM457_13345 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_13350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM457_13350 PF00364 Biotin-requiring enzyme AM457_13350 PF02817 e3 binding domain AM457_13355 PF02780 Transketolase, C-terminal domain AM457_13355 PF02779 Transketolase, pyrimidine binding domain AM457_13360 PF00676 Dehydrogenase E1 component AM457_13365 PF04055 Radical SAM superfamily AM457_13380 PF08448 PAS fold AM457_13380 PF00990 Diguanylate cyclase, GGDEF domain AM457_13385 PF01264 Chorismate synthase AM457_13390 PF05175 Methyltransferase small domain AM457_13395 PF00291 Pyridoxal-phosphate dependent enzyme AM457_13405 PF00004 ATPase family associated with various cellular activities (AAA) AM457_13405 PF01434 Peptidase family M41 AM457_13405 PF17862 AAA+ lid domain AM457_13415 PF05166 YcgL domain AM457_13435 PF01612 3'-5' exonuclease AM457_13435 PF00570 HRDC domain AM457_13440 PF02132 RecR protein AM457_13440 PF13662 Toprim domain AM457_13445 PF02575 YbaB/EbfC DNA-binding family AM457_13455 PF01053 Cys/Met metabolism PLP-dependent enzyme AM457_13460 PF00561 alpha/beta hydrolase fold AM457_13465 PF08241 Methyltransferase domain AM457_13495 PF01230 HIT domain AM457_13530 PF00005 ABC transporter AM457_13535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM457_13545 PF02684 Lipid-A-disaccharide synthetase AM457_13550 PF07715 TonB-dependent Receptor Plug Domain AM457_13550 PF00593 TonB dependent receptor AM457_13570 PF01925 Sulfite exporter TauE/SafE AM457_13575 PF00793 DAHP synthetase I family AM457_13580 PF02654 Cobalamin-5-phosphate synthase AM457_13590 PF00300 Histidine phosphatase superfamily (branch 1) AM457_13595 PF02277 Phosphoribosyltransferase AM457_13600 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AM457_13640 PF07715 TonB-dependent Receptor Plug Domain AM457_13640 PF00593 TonB dependent receptor AM457_13645 PF03737 Aldolase/RraA AM457_13655 PF04183 IucA / IucC family AM457_13655 PF06276 Ferric iron reductase FhuF-like transporter AM457_13660 PF06276 Ferric iron reductase FhuF-like transporter AM457_13660 PF04183 IucA / IucC family AM457_13665 PF07690 Major Facilitator Superfamily AM457_13670 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM457_13675 PF06276 Ferric iron reductase FhuF-like transporter AM457_13675 PF04183 IucA / IucC family AM457_13680 PF04073 Aminoacyl-tRNA editing domain AM457_13690 PF03109 ABC1 family AM457_13695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_13695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_13695 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_13700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_13700 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_13700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_13705 PF00487 Fatty acid desaturase AM457_13710 PF12852 Cupin AM457_13710 PF12833 Helix-turn-helix domain AM457_13715 PF09312 SurA N-terminal domain AM457_13715 PF00639 PPIC-type PPIASE domain AM457_13720 PF00216 Bacterial DNA-binding protein AM457_13735 PF02082 Transcriptional regulator AM457_13740 PF00266 Aminotransferase class-V AM457_13745 PF01592 NifU-like N terminal domain AM457_13750 PF01521 Iron-sulphur cluster biosynthesis AM457_13755 PF00226 DnaJ domain AM457_13755 PF07743 HSCB C-terminal oligomerisation domain AM457_13760 PF00012 Hsp70 protein AM457_13765 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_13770 PF00211 Adenylate and Guanylate cyclase catalytic domain AM457_13780 PF00271 Helicase conserved C-terminal domain AM457_13780 PF17757 UvrB interaction domain AM457_13780 PF03461 TRCF domain AM457_13780 PF02559 CarD-like/TRCF domain AM457_13780 PF00270 DEAD/DEAH box helicase AM457_13800 PF03737 Aldolase/RraA AM457_13805 PF13460 NAD(P)H-binding AM457_13810 PF01649 Ribosomal protein S20 AM457_13820 PF00459 Inositol monophosphatase family AM457_13835 PF00005 ABC transporter AM457_13835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM457_13840 PF00528 Binding-protein-dependent transport system inner membrane component AM457_13845 PF00528 Binding-protein-dependent transport system inner membrane component AM457_13850 PF01432 Peptidase family M3 AM457_13870 PF00593 TonB dependent receptor AM457_13870 PF07715 TonB-dependent Receptor Plug Domain AM457_13875 PF03544 Gram-negative bacterial TonB protein C-terminal AM457_13880 PF01618 MotA/TolQ/ExbB proton channel family AM457_13885 PF02472 Biopolymer transport protein ExbD/TolR AM457_13890 PF02472 Biopolymer transport protein ExbD/TolR AM457_13900 PF01274 Malate synthase AM457_13905 PF03969 AFG1-like ATPase AM457_13915 PF00743 Flavin-binding monooxygenase-like AM457_13925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM457_13935 PF00216 Bacterial DNA-binding protein AM457_13940 PF00575 S1 RNA binding domain AM457_13945 PF02224 Cytidylate kinase AM457_13955 PF14437 MafB19-like deaminase AM457_13965 PF03167 Uracil DNA glycosylase superfamily AM457_13975 PF03934 Type II secretion system (T2SS), protein K AM457_13980 PF07963 Prokaryotic N-terminal methylation motif AM457_13980 PF11612 Type II secretion system (T2SS), protein J AM457_13985 PF07963 Prokaryotic N-terminal methylation motif AM457_13985 PF02501 Type II secretion system (T2SS), protein I AM457_14000 PF01026 TatD related DNase AM457_14010 PF09115 DNA polymerase III, delta subunit, C terminal AM457_14015 PF02348 Cytidylyltransferase AM457_14020 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AM457_14025 PF00005 ABC transporter AM457_14025 PF00664 ABC transporter transmembrane region AM457_14035 PF01618 MotA/TolQ/ExbB proton channel family AM457_14040 PF02195 ParB-like nuclease domain AM457_14040 PF17762 HTH domain found in ParB protein AM457_14045 PF13614 AAA domain AM457_14050 PF02527 rRNA small subunit methyltransferase G AM457_14055 PF00483 Nucleotidyl transferase AM457_14060 PF01636 Phosphotransferase enzyme family AM457_14065 PF04453 LPS transport system D AM457_14065 PF03968 OstA-like protein AM457_14070 PF09312 SurA N-terminal domain AM457_14070 PF00639 PPIC-type PPIASE domain AM457_14075 PF01116 Fructose-bisphosphate aldolase class-II AM457_14085 PF00162 Phosphoglycerate kinase AM457_14095 PF02545 Maf-like protein AM457_14100 PF08007 Cupin superfamily protein AM457_14115 PF00375 Sodium:dicarboxylate symporter family AM457_14120 PF06912 Protein of unknown function (DUF1275) AM457_14125 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AM457_14130 PF00005 ABC transporter AM457_14130 PF00664 ABC transporter transmembrane region AM457_14140 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AM457_14140 PF12833 Helix-turn-helix domain AM457_14145 PF01597 Glycine cleavage H-protein AM457_14150 PF02146 Sir2 family AM457_14155 PF00474 Sodium:solute symporter family AM457_14160 PF01037 Lrp/AsnC ligand binding domain AM457_14165 PF00171 Aldehyde dehydrogenase family AM457_14165 PF01619 Proline dehydrogenase AM457_14165 PF14850 DNA-binding domain of Proline dehydrogenase AM457_14165 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM457_14170 PF04229 GrpB protein AM457_14175 PF05958 tRNA (Uracil-5-)-methyltransferase AM457_14185 PF09992 Phosphodiester glycosidase AM457_14195 PF04264 YceI-like domain AM457_14205 PF00456 Transketolase, thiamine diphosphate binding domain AM457_14205 PF02780 Transketolase, C-terminal domain AM457_14205 PF02779 Transketolase, pyrimidine binding domain AM457_14210 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM457_14210 PF02772 S-adenosylmethionine synthetase, central domain AM457_14210 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM457_14235 PF00905 Penicillin binding protein transpeptidase domain AM457_14250 PF02075 Crossover junction endodeoxyribonuclease RuvC AM457_14255 PF03853 YjeF-related protein N-terminus AM457_14255 PF01256 Carbohydrate kinase AM457_14260 PF08331 Domain of unknown function (DUF1730) AM457_14265 PF06968 Biotin and Thiamin Synthesis associated domain AM457_14265 PF04055 Radical SAM superfamily AM457_14280 PF16970 Type-1 fimbrial protein, A AM457_14290 PF02753 Pili assembly chaperone PapD, C-terminal domain AM457_14290 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM457_14295 PF13954 PapC N-terminal domain AM457_14295 PF00577 Outer membrane usher protein AM457_14295 PF13953 PapC C-terminal domain AM457_14320 PF00892 EamA-like transporter family AM457_14330 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM457_14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14340 PF03466 LysR substrate binding domain AM457_14365 PF00440 Bacterial regulatory proteins, tetR family AM457_14375 PF01709 Transcriptional regulator AM457_14380 PF01037 Lrp/AsnC ligand binding domain AM457_14390 PF00005 ABC transporter AM457_14395 PF00528 Binding-protein-dependent transport system inner membrane component AM457_14400 PF00528 Binding-protein-dependent transport system inner membrane component AM457_14415 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AM457_14415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_14430 PF03180 NLPA lipoprotein AM457_14435 PF03180 NLPA lipoprotein AM457_14440 PF00005 ABC transporter AM457_14440 PF09383 NIL domain AM457_14445 PF00528 Binding-protein-dependent transport system inner membrane component AM457_14450 PF01926 50S ribosome-binding GTPase AM457_14450 PF06071 Protein of unknown function (DUF933) AM457_14475 PF03591 AzlC protein AM457_14480 PF05437 Branched-chain amino acid transport protein (AzlD) AM457_14490 PF02222 ATP-grasp domain AM457_14495 PF01909 Nucleotidyltransferase domain AM457_14495 PF01966 HD domain AM457_14495 PF08335 GlnD PII-uridylyltransferase AM457_14500 PF00155 Aminotransferase class I and II AM457_14510 PF12833 Helix-turn-helix domain AM457_14510 PF12852 Cupin AM457_14515 PF00255 Glutathione peroxidase AM457_14520 PF01641 SelR domain AM457_14525 PF00155 Aminotransferase class I and II AM457_14530 PF00375 Sodium:dicarboxylate symporter family AM457_14535 PF17763 Glutaminase/Asparaginase C-terminal domain AM457_14535 PF00710 Asparaginase, N-terminal AM457_14540 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM457_14540 PF01336 OB-fold nucleic acid binding domain AM457_14540 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM457_14540 PF02811 PHP domain AM457_14540 PF14579 Helix-hairpin-helix motif AM457_14545 PF00588 SpoU rRNA Methylase family AM457_14550 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_14565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_14565 PF13192 Thioredoxin domain AM457_14580 PF03466 LysR substrate binding domain AM457_14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14585 PF01758 Sodium Bile acid symporter family AM457_14590 PF01022 Bacterial regulatory protein, arsR family AM457_14595 PF03960 ArsC family AM457_14605 PF01979 Amidohydrolase family AM457_14605 PF13382 Adenine deaminase C-terminal domain AM457_14615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14615 PF03466 LysR substrate binding domain AM457_14625 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM457_14630 PF01177 Asp/Glu/Hydantoin racemase AM457_14635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AM457_14640 PF00528 Binding-protein-dependent transport system inner membrane component AM457_14645 PF00005 ABC transporter AM457_14650 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM457_14660 PF00083 Sugar (and other) transporter AM457_14665 PF00296 Luciferase-like monooxygenase AM457_14685 PF01654 Cytochrome bd terminal oxidase subunit I AM457_14690 PF02322 Cytochrome bd terminal oxidase subunit II AM457_14700 PF00392 Bacterial regulatory proteins, gntR family AM457_14700 PF00155 Aminotransferase class I and II AM457_14705 PF03466 LysR substrate binding domain AM457_14705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14720 PF00698 Acyl transferase domain AM457_14725 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AM457_14735 PF01039 Carboxyl transferase domain AM457_14740 PF06857 Malonate decarboxylase delta subunit (MdcD) AM457_14745 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM457_14750 PF16957 Malonate decarboxylase, alpha subunit, transporter AM457_14755 PF03466 LysR substrate binding domain AM457_14755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14765 PF07690 Major Facilitator Superfamily AM457_14780 PF00392 Bacterial regulatory proteins, gntR family AM457_14780 PF00155 Aminotransferase class I and II AM457_14785 PF04172 LrgB-like family AM457_14790 PF03788 LrgA family AM457_14795 PF03466 LysR substrate binding domain AM457_14795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14800 PF14834 Glutathione S-transferase, C-terminal domain AM457_14800 PF02798 Glutathione S-transferase, N-terminal domain AM457_14805 PF02798 Glutathione S-transferase, N-terminal domain AM457_14810 PF03466 LysR substrate binding domain AM457_14810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14820 PF00581 Rhodanese-like domain AM457_14825 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_14835 PF00266 Aminotransferase class-V AM457_14840 PF01810 LysE type translocator AM457_14845 PF03466 LysR substrate binding domain AM457_14845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_14850 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM457_14855 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM457_14860 PF00005 ABC transporter AM457_14870 PF00528 Binding-protein-dependent transport system inner membrane component AM457_14885 PF00072 Response regulator receiver domain AM457_14890 PF00072 Response regulator receiver domain AM457_14890 PF00512 His Kinase A (phospho-acceptor) domain AM457_14890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_14890 PF09308 LuxQ, periplasmic AM457_14900 PF01037 Lrp/AsnC ligand binding domain AM457_14900 PF13404 AsnC-type helix-turn-helix domain AM457_14910 PF00717 Peptidase S24-like AM457_14940 PF18011 C-terminal domain found in long catalases AM457_14940 PF06628 Catalase-related immune-responsive AM457_14940 PF00199 Catalase AM457_14950 PF18146 Damage-inducible protein CinA KH domain AM457_14950 PF02464 Competence-damaged protein AM457_14950 PF00994 Probable molybdopterin binding domain AM457_14980 PF03466 LysR substrate binding domain AM457_14980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_15000 PF13193 AMP-binding enzyme C-terminal domain AM457_15000 PF00501 AMP-binding enzyme AM457_15005 PF00440 Bacterial regulatory proteins, tetR family AM457_15010 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_15010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_15010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_15015 PF01039 Carboxyl transferase domain AM457_15020 PF00378 Enoyl-CoA hydratase/isomerase AM457_15025 PF00289 Biotin carboxylase, N-terminal domain AM457_15025 PF00364 Biotin-requiring enzyme AM457_15025 PF02785 Biotin carboxylase C-terminal domain AM457_15025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM457_15030 PF00682 HMGL-like AM457_15035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_15035 PF03466 LysR substrate binding domain AM457_15050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_15050 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_15050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_15050 PF12806 Acetyl-CoA dehydrogenase C-terminal like AM457_15060 PF07690 Major Facilitator Superfamily AM457_15070 PF01144 Coenzyme A transferase AM457_15075 PF01144 Coenzyme A transferase AM457_15080 PF07690 Major Facilitator Superfamily AM457_15085 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_15085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_15085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_15090 PF00378 Enoyl-CoA hydratase/isomerase AM457_15100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM457_15100 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM457_15100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM457_15105 PF02803 Thiolase, C-terminal domain AM457_15105 PF00108 Thiolase, N-terminal domain AM457_15110 PF09339 IclR helix-turn-helix domain AM457_15115 PF07690 Major Facilitator Superfamily AM457_15120 PF03060 Nitronate monooxygenase AM457_15125 PF00378 Enoyl-CoA hydratase/isomerase AM457_15130 PF09339 IclR helix-turn-helix domain AM457_15135 PF02515 CoA-transferase family III AM457_15140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_15140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_15140 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_15145 PF07690 Major Facilitator Superfamily AM457_15150 PF13419 Haloacid dehalogenase-like hydrolase AM457_15155 PF00266 Aminotransferase class-V AM457_15160 PF01266 FAD dependent oxidoreductase AM457_15165 PF00528 Binding-protein-dependent transport system inner membrane component AM457_15170 PF08402 TOBE domain AM457_15170 PF00005 ABC transporter AM457_15180 PF07702 UTRA domain AM457_15180 PF00392 Bacterial regulatory proteins, gntR family AM457_15185 PF01494 FAD binding domain AM457_15190 PF09339 IclR helix-turn-helix domain AM457_15190 PF01614 Bacterial transcriptional regulator AM457_15195 PF02525 Flavodoxin-like fold AM457_15200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_15200 PF03466 LysR substrate binding domain AM457_15210 PF13610 DDE domain AM457_15245 PF00712 DNA polymerase III beta subunit, N-terminal domain AM457_15245 PF02768 DNA polymerase III beta subunit, C-terminal domain AM457_15245 PF02767 DNA polymerase III beta subunit, central domain AM457_15285 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AM457_15490 PF01695 IstB-like ATP binding protein AM457_15505 PF03796 DnaB-like helicase C terminal domain AM457_15505 PF00772 DnaB-like helicase N terminal domain AM457_15535 PF02384 N-6 DNA Methylase AM457_15535 PF12161 HsdM N-terminal domain AM457_15615 PF01645 Conserved region in glutamate synthase AM457_15630 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM457_15630 PF01565 FAD binding domain AM457_15635 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM457_15645 PF00465 Iron-containing alcohol dehydrogenase AM457_15650 PF03061 Thioesterase superfamily AM457_15655 PF05506 Domain of unknown function (DUF756) AM457_15655 PF04185 Phosphoesterase family AM457_15660 PF12170 DNA polymerase III tau subunit V interacting with alpha AM457_15660 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM457_15660 PF12169 DNA polymerase III subunits gamma and tau domain III AM457_15665 PF07690 Major Facilitator Superfamily AM457_15690 PF00108 Thiolase, N-terminal domain AM457_15690 PF02803 Thiolase, C-terminal domain AM457_15700 PF03466 LysR substrate binding domain AM457_15700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_15715 PF01037 Lrp/AsnC ligand binding domain AM457_15720 PF03594 Benzoate membrane transport protein AM457_15725 PF02308 MgtC family AM457_15745 PF00582 Universal stress protein family AM457_15750 PF12848 ABC transporter AM457_15750 PF00005 ABC transporter AM457_15775 PF00593 TonB dependent receptor AM457_15775 PF07715 TonB-dependent Receptor Plug Domain AM457_15805 PF00924 Mechanosensitive ion channel AM457_15810 PF07715 TonB-dependent Receptor Plug Domain AM457_15810 PF00593 TonB dependent receptor AM457_15815 PF00440 Bacterial regulatory proteins, tetR family AM457_15830 PF01202 Shikimate kinase AM457_15845 PF01037 Lrp/AsnC ligand binding domain AM457_15850 PF01817 Chorismate mutase type II AM457_15875 PF13953 PapC C-terminal domain AM457_15875 PF00577 Outer membrane usher protein AM457_15875 PF13954 PapC N-terminal domain AM457_15890 PF11940 Domain of unknown function (DUF3458) Ig-like fold AM457_15890 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AM457_15890 PF01433 Peptidase family M1 domain AM457_15905 PF02110 Hydroxyethylthiazole kinase family AM457_15915 PF14493 Helix-turn-helix domain AM457_15915 PF05970 PIF1-like helicase AM457_15920 PF00465 Iron-containing alcohol dehydrogenase AM457_15935 PF00171 Aldehyde dehydrogenase family AM457_15940 PF13520 Amino acid permease AM457_15945 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM457_15950 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM457_15955 PF02540 NAD synthase AM457_15955 PF00958 GMP synthase C terminal domain AM457_15955 PF00117 Glutamine amidotransferase class-I AM457_15960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AM457_15960 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM457_15965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM457_15970 PF00149 Calcineurin-like phosphoesterase AM457_15980 PF00881 Nitroreductase family AM457_15990 PF17209 Hfq protein AM457_16000 PF08676 MutL C terminal dimerisation domain AM457_16000 PF01119 DNA mismatch repair protein, C-terminal domain AM457_16005 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM457_16010 PF01479 S4 domain AM457_16010 PF00849 RNA pseudouridylate synthase AM457_16025 PF01479 S4 domain AM457_16025 PF00849 RNA pseudouridylate synthase AM457_16035 PF04284 Protein of unknown function (DUF441) AM457_16040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_16040 PF03466 LysR substrate binding domain AM457_16130 PF10124 Mu-like prophage major head subunit gpT AM457_16145 PF05069 Phage virion morphogenesis family AM457_16150 PF04233 Phage Mu protein F like protein AM457_16155 PF06074 Protein of unknown function (DUF935) AM457_16165 PF03237 Terminase-like family AM457_16230 PF13401 AAA domain AM457_16230 PF01471 Putative peptidoglycan binding domain AM457_16255 PF00216 Bacterial DNA-binding protein AM457_16305 PF07690 Major Facilitator Superfamily AM457_16310 PF00027 Cyclic nucleotide-binding domain AM457_16310 PF00520 Ion transport protein AM457_16320 PF11791 Aconitate B N-terminal domain AM457_16320 PF00330 Aconitase family (aconitate hydratase) AM457_16320 PF06434 Aconitate hydratase 2 N-terminus AM457_16340 PF07244 Surface antigen variable number repeat AM457_16340 PF17243 POTRA domain TamA domain 1 AM457_16340 PF01103 Surface antigen AM457_16345 PF07690 Major Facilitator Superfamily AM457_16350 PF03232 Ubiquinone biosynthesis protein COQ7 AM457_16360 PF00120 Glutamine synthetase, catalytic domain AM457_16365 PF00486 Transcriptional regulatory protein, C terminal AM457_16365 PF00072 Response regulator receiver domain AM457_16370 PF02702 Osmosensitive K+ channel His kinase sensor domain AM457_16370 PF00512 His Kinase A (phospho-acceptor) domain AM457_16370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_16370 PF13493 Domain of unknown function (DUF4118) AM457_16375 PF02669 K+-transporting ATPase, c chain AM457_16385 PF03814 Potassium-transporting ATPase A subunit AM457_16400 PF03109 ABC1 family AM457_16405 PF00899 ThiF family AM457_16410 PF01613 Flavin reductase like domain AM457_16415 PF13193 AMP-binding enzyme C-terminal domain AM457_16415 PF00501 AMP-binding enzyme AM457_16420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_16420 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_16420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_16425 PF00106 short chain dehydrogenase AM457_16430 PF12833 Helix-turn-helix domain AM457_16435 PF09084 NMT1/THI5 like AM457_16440 PF00528 Binding-protein-dependent transport system inner membrane component AM457_16445 PF17827 PrmC N-terminal domain AM457_16445 PF13847 Methyltransferase domain AM457_16450 PF03462 PCRF domain AM457_16450 PF00472 RF-1 domain AM457_16460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_16460 PF03466 LysR substrate binding domain AM457_16480 PF00296 Luciferase-like monooxygenase AM457_16490 PF13994 PgaD-like protein AM457_16495 PF00535 Glycosyl transferase family 2 AM457_16500 PF01522 Polysaccharide deacetylase AM457_16500 PF14883 Hypothetical glycosyl hydrolase family 13 AM457_16510 PF03618 Kinase/pyrophosphorylase AM457_16515 PF00391 PEP-utilising enzyme, mobile domain AM457_16515 PF02896 PEP-utilising enzyme, TIM barrel domain AM457_16515 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM457_16525 PF06481 COX Aromatic Rich Motif AM457_16525 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM457_16530 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM457_16535 PF00510 Cytochrome c oxidase subunit III AM457_16540 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AM457_16545 PF01040 UbiA prenyltransferase family AM457_16550 PF01250 Ribosomal protein S6 AM457_16555 PF01084 Ribosomal protein S18 AM457_16560 PF03948 Ribosomal protein L9, C-terminal domain AM457_16560 PF01281 Ribosomal protein L9, N-terminal domain AM457_16565 PF00772 DnaB-like helicase N terminal domain AM457_16565 PF03796 DnaB-like helicase C terminal domain AM457_16570 PF00842 Alanine racemase, C-terminal domain AM457_16570 PF01168 Alanine racemase, N-terminal domain AM457_16580 PF01841 Transglutaminase-like superfamily AM457_16580 PF08379 Bacterial transglutaminase-like N-terminal region AM457_16590 PF14403 Circularly permuted ATP-grasp type 2 AM457_16600 PF13932 GidA associated domain AM457_16600 PF01134 Glucose inhibited division protein A AM457_16625 PF02954 Bacterial regulatory protein, Fis family AM457_16630 PF01808 AICARFT/IMPCHase bienzyme AM457_16630 PF02142 MGS-like domain AM457_16635 PF02843 Phosphoribosylglycinamide synthetase, C domain AM457_16635 PF02844 Phosphoribosylglycinamide synthetase, N domain AM457_16635 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM457_16640 PF03180 NLPA lipoprotein AM457_16645 PF00005 ABC transporter AM457_16645 PF09383 NIL domain AM457_16650 PF00528 Binding-protein-dependent transport system inner membrane component AM457_16655 PF16123 Hydroxyacylglutathione hydrolase C-terminus AM457_16655 PF00753 Metallo-beta-lactamase superfamily AM457_16665 PF00375 Sodium:dicarboxylate symporter family AM457_16685 PF07995 Glucose / Sorbosone dehydrogenase AM457_16690 PF00892 EamA-like transporter family AM457_16695 PF01177 Asp/Glu/Hydantoin racemase AM457_16700 PF00085 Thioredoxin AM457_16700 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_16715 PF02470 MlaD protein AM457_16720 PF04403 Paraquat-inducible protein A AM457_16745 PF08946 Osmosensory transporter coiled coil AM457_16745 PF00083 Sugar (and other) transporter AM457_16805 PF07729 FCD domain AM457_16805 PF00392 Bacterial regulatory proteins, gntR family AM457_16815 PF03616 Sodium/glutamate symporter AM457_16820 PF00561 alpha/beta hydrolase fold AM457_16845 PF04076 Bacterial OB fold (BOF) protein AM457_16875 PF00324 Amino acid permease AM457_16880 PF00171 Aldehyde dehydrogenase family AM457_16885 PF00202 Aminotransferase class-III AM457_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_16890 PF03466 LysR substrate binding domain AM457_16905 PF03793 PASTA domain AM457_16905 PF00069 Protein kinase domain AM457_16925 PF00814 Glycoprotease family AM457_16930 PF01165 Ribosomal protein S21 AM457_16935 PF09424 Yqey-like protein AM457_16940 PF01435 Peptidase family M48 AM457_16945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM457_16945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM457_16960 PF00156 Phosphoribosyl transferase domain AM457_16965 PF02674 Colicin V production protein AM457_16970 PF01180 Dihydroorotate dehydrogenase AM457_16990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM457_16990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM457_16995 PF00881 Nitroreductase family AM457_17005 PF00271 Helicase conserved C-terminal domain AM457_17005 PF00270 DEAD/DEAH box helicase AM457_17010 PF00313 'Cold-shock' DNA-binding domain AM457_17020 PF04545 Sigma-70, region 4 AM457_17020 PF04542 Sigma-70 region 2 AM457_17020 PF00140 Sigma-70 factor, region 1.2 AM457_17025 PF04241 Protein of unknown function (DUF423) AM457_17035 PF05690 Thiazole biosynthesis protein ThiG AM457_17040 PF03883 Peroxide stress protein YaaA AM457_17050 PF00753 Metallo-beta-lactamase superfamily AM457_17055 PF07687 Peptidase dimerisation domain AM457_17055 PF01546 Peptidase family M20/M25/M40 AM457_17065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM457_17070 PF00800 Prephenate dehydratase AM457_17070 PF01817 Chorismate mutase type II AM457_17070 PF01842 ACT domain AM457_17075 PF00756 Putative esterase AM457_17080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_17080 PF02770 Acyl-CoA dehydrogenase, middle domain AM457_17080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_17085 PF00375 Sodium:dicarboxylate symporter family AM457_17095 PF02885 Glycosyl transferase family, helical bundle domain AM457_17095 PF00591 Glycosyl transferase family, a/b domain AM457_17100 PF07023 Protein of unknown function (DUF1315) AM457_17105 PF01513 ATP-NAD kinase AM457_17110 PF14814 Bifunctional transglycosylase second domain AM457_17110 PF00912 Transglycosylase AM457_17110 PF00905 Penicillin binding protein transpeptidase domain AM457_17120 PF00293 NUDIX domain AM457_17130 PF08521 Two-component sensor kinase N-terminal AM457_17130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM457_17130 PF00512 His Kinase A (phospho-acceptor) domain AM457_17135 PF00072 Response regulator receiver domain AM457_17135 PF00486 Transcriptional regulatory protein, C terminal AM457_17145 PF00437 Type II/IV secretion system protein AM457_17155 PF01980 tRNA-methyltransferase O AM457_17155 PF18389 TrmO C-terminal domain AM457_17160 PF00970 Oxidoreductase FAD-binding domain AM457_17160 PF00175 Oxidoreductase NAD-binding domain AM457_17165 PF02567 Phenazine biosynthesis-like protein AM457_17170 PF00392 Bacterial regulatory proteins, gntR family AM457_17170 PF00155 Aminotransferase class I and II AM457_17180 PF00037 4Fe-4S binding domain AM457_17185 PF00893 Small Multidrug Resistance protein AM457_17190 PF00005 ABC transporter AM457_17195 PF00528 Binding-protein-dependent transport system inner membrane component AM457_17200 PF00528 Binding-protein-dependent transport system inner membrane component AM457_17205 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM457_17210 PF03466 LysR substrate binding domain AM457_17210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_17220 PF13533 Biotin-lipoyl like AM457_17225 PF00873 AcrB/AcrD/AcrF family AM457_17230 PF02321 Outer membrane efflux protein AM457_17235 PF00464 Serine hydroxymethyltransferase AM457_17265 PF00005 ABC transporter AM457_17270 PF01061 ABC-2 type transporter AM457_17275 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM457_17275 PF14489 QueF-like protein AM457_17285 PF01098 Cell cycle protein AM457_17290 PF13406 Transglycosylase SLT domain AM457_17295 PF03330 Lytic transglycolase AM457_17295 PF05036 Sporulation related domain AM457_17315 PF12833 Helix-turn-helix domain AM457_17325 PF00889 Elongation factor TS AM457_17330 PF00318 Ribosomal protein S2 AM457_17335 PF00557 Metallopeptidase family M24 AM457_17345 PF07690 Major Facilitator Superfamily AM457_17355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM457_17355 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_17360 PF04055 Radical SAM superfamily AM457_17365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM457_17365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM457_17365 PF09317 Domain of unknown function (DUF1974) AM457_17380 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM457_17380 PF05221 S-adenosyl-L-homocysteine hydrolase AM457_17385 PF02219 Methylenetetrahydrofolate reductase AM457_17390 PF04452 RNA methyltransferase AM457_17395 PF03707 Bacterial signalling protein N terminal repeat AM457_17395 PF00990 Diguanylate cyclase, GGDEF domain AM457_17395 PF00563 EAL domain AM457_17400 PF00390 Malic enzyme, N-terminal domain AM457_17400 PF01515 Phosphate acetyl/butaryl transferase AM457_17400 PF03949 Malic enzyme, NAD binding domain AM457_17405 PF12627 Probable RNA and SrmB- binding site of polymerase A AM457_17405 PF01743 Poly A polymerase head domain AM457_17410 PF13180 PDZ domain AM457_17415 PF01784 NIF3 (NGG1p interacting factor 3) AM457_17420 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM457_17420 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM457_17455 PF01040 UbiA prenyltransferase family AM457_17460 PF04345 Chorismate lyase AM457_17470 PF00854 POT family AM457_17480 PF00117 Glutamine amidotransferase class-I AM457_17485 PF11838 ERAP1-like C-terminal domain AM457_17485 PF01433 Peptidase family M1 domain AM457_17490 PF07715 TonB-dependent Receptor Plug Domain AM457_17490 PF00593 TonB dependent receptor AM457_17495 PF02885 Glycosyl transferase family, helical bundle domain AM457_17495 PF00591 Glycosyl transferase family, a/b domain AM457_17500 PF00218 Indole-3-glycerol phosphate synthase AM457_17515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM457_17515 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM457_17520 PF01799 [2Fe-2S] binding domain AM457_17520 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_17535 PF00144 Beta-lactamase AM457_17550 PF05675 Protein of unknown function (DUF817) AM457_17555 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM457_17565 PF00425 chorismate binding enzyme AM457_17575 PF00975 Thioesterase domain AM457_17580 PF00005 ABC transporter AM457_17580 PF00664 ABC transporter transmembrane region AM457_17585 PF00664 ABC transporter transmembrane region AM457_17585 PF00005 ABC transporter AM457_17595 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM457_17600 PF00550 Phosphopantetheine attachment site AM457_17600 PF00857 Isochorismatase family AM457_17605 PF00501 AMP-binding enzyme AM457_17605 PF13193 AMP-binding enzyme C-terminal domain AM457_17610 PF00501 AMP-binding enzyme AM457_17610 PF00668 Condensation domain AM457_17610 PF00550 Phosphopantetheine attachment site AM457_17615 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM457_17620 PF00593 TonB dependent receptor AM457_17620 PF07715 TonB-dependent Receptor Plug Domain AM457_17625 PF01497 Periplasmic binding protein AM457_17630 PF00005 ABC transporter AM457_17635 PF01032 FecCD transport family AM457_17640 PF01032 FecCD transport family AM457_17645 PF00550 Phosphopantetheine attachment site AM457_17645 PF00668 Condensation domain AM457_17645 PF00975 Thioesterase domain AM457_17645 PF13193 AMP-binding enzyme C-terminal domain AM457_17645 PF00501 AMP-binding enzyme AM457_17650 PF00550 Phosphopantetheine attachment site AM457_17650 PF00501 AMP-binding enzyme AM457_17650 PF13193 AMP-binding enzyme C-terminal domain AM457_17650 PF00668 Condensation domain AM457_17660 PF13309 HTH domain AM457_17660 PF08348 YheO-like PAS domain AM457_17665 PF00291 Pyridoxal-phosphate dependent enzyme AM457_17670 PF02678 Pirin AM457_17670 PF17954 Quercetinase C-terminal cupin domain AM457_17690 PF04328 Selenoprotein, putative AM457_17695 PF13722 5TM C-terminal transporter carbon starvation CstA AM457_17695 PF02554 Carbon starvation protein CstA AM457_17700 PF01132 Elongation factor P (EF-P) OB domain AM457_17700 PF08207 Elongation factor P (EF-P) KOW-like domain AM457_17700 PF09285 Elongation factor P, C-terminal AM457_17705 PF04055 Radical SAM superfamily AM457_17720 PF01197 Ribosomal protein L31 AM457_17725 PF13593 SBF-like CPA transporter family (DUF4137) AM457_17730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM457_17735 PF07690 Major Facilitator Superfamily AM457_17740 PF13654 AAA domain AM457_17740 PF05362 Lon protease (S16) C-terminal proteolytic domain AM457_17745 PF03466 LysR substrate binding domain AM457_17745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_17750 PF01551 Peptidase family M23 AM457_17750 PF01476 LysM domain AM457_17755 PF01975 Survival protein SurE AM457_17770 PF00768 D-alanyl-D-alanine carboxypeptidase AM457_17770 PF07943 Penicillin-binding protein 5, C-terminal domain AM457_17775 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_17780 PF00293 NUDIX domain AM457_17780 PF13344 Haloacid dehalogenase-like hydrolase AM457_17790 PF04356 Protein of unknown function (DUF489) AM457_17795 PF08328 Adenylosuccinate lyase C-terminal AM457_17795 PF00206 Lyase AM457_17810 PF01343 Peptidase family S49 AM457_17810 PF08496 Peptidase family S49 N-terminal AM457_17815 PF00005 ABC transporter AM457_17820 PF00528 Binding-protein-dependent transport system inner membrane component AM457_17825 PF00528 Binding-protein-dependent transport system inner membrane component AM457_17830 PF12849 PBP superfamily domain AM457_17835 PF00324 Amino acid permease AM457_17840 PF00205 Thiamine pyrophosphate enzyme, central domain AM457_17840 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM457_17840 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM457_17845 PF01037 Lrp/AsnC ligand binding domain AM457_17850 PF00171 Aldehyde dehydrogenase family AM457_17855 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM457_17860 PF00202 Aminotransferase class-III AM457_17870 PF00440 Bacterial regulatory proteins, tetR family AM457_17870 PF17754 MftR C-terminal domain AM457_17880 PF00487 Fatty acid desaturase AM457_17885 PF00175 Oxidoreductase NAD-binding domain AM457_17885 PF00111 2Fe-2S iron-sulfur cluster binding domain AM457_17885 PF00970 Oxidoreductase FAD-binding domain AM457_17890 PF00440 Bacterial regulatory proteins, tetR family AM457_17900 PF00271 Helicase conserved C-terminal domain AM457_17900 PF00176 SNF2 family N-terminal domain AM457_17900 PF18339 RapA N-terminal Tudor like domain 1 AM457_17900 PF12137 RNA polymerase recycling family C-terminal AM457_17900 PF18337 RapA N-terminal Tudor like domain AM457_17905 PF00849 RNA pseudouridylate synthase AM457_17915 PF00202 Aminotransferase class-III AM457_17920 PF02581 Thiamine monophosphate synthase AM457_17945 PF05193 Peptidase M16 inactive domain AM457_17945 PF00675 Insulinase (Peptidase family M16) AM457_17950 PF02567 Phenazine biosynthesis-like protein AM457_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_17960 PF03466 LysR substrate binding domain AM457_17965 PF06779 Uncharacterised MFS-type transporter YbfB AM457_17985 PF00180 Isocitrate/isopropylmalate dehydrogenase AM457_17990 PF00849 RNA pseudouridylate synthase AM457_17995 PF03971 Monomeric isocitrate dehydrogenase AM457_18005 PF07943 Penicillin-binding protein 5, C-terminal domain AM457_18005 PF00768 D-alanyl-D-alanine carboxypeptidase AM457_18010 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM457_18015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM457_18020 PF03441 FAD binding domain of DNA photolyase AM457_18020 PF00875 DNA photolyase AM457_18050 PF02350 UDP-N-acetylglucosamine 2-epimerase AM457_18065 PF03060 Nitronate monooxygenase AM457_18070 PF01207 Dihydrouridine synthase (Dus) AM457_18075 PF07759 Protein of unknown function (DUF1615) AM457_18085 PF01472 PUA domain AM457_18085 PF00696 Amino acid kinase family AM457_18090 PF01018 GTP1/OBG AM457_18090 PF01926 50S ribosome-binding GTPase AM457_18105 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM457_18105 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM457_18110 PF00892 EamA-like transporter family AM457_18120 PF17757 UvrB interaction domain AM457_18120 PF00271 Helicase conserved C-terminal domain AM457_18120 PF12344 Ultra-violet resistance protein B AM457_18120 PF04851 Type III restriction enzyme, res subunit AM457_18120 PF02151 UvrB/uvrC motif AM457_18130 PF00990 Diguanylate cyclase, GGDEF domain AM457_18130 PF17151 Periplasmic sensor domain AM457_18170 PF00106 short chain dehydrogenase AM457_18175 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AM457_18180 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM457_18185 PF11967 Recombination protein O N terminal AM457_18185 PF02565 Recombination protein O C terminal AM457_18195 PF07650 KH domain AM457_18195 PF01926 50S ribosome-binding GTPase AM457_18200 PF00035 Double-stranded RNA binding motif AM457_18200 PF14622 Ribonuclease-III-like AM457_18210 PF10502 Signal peptidase, peptidase S26 AM457_18215 PF03144 Elongation factor Tu domain 2 AM457_18215 PF00679 Elongation factor G C-terminus AM457_18215 PF06421 GTP-binding protein LepA C-terminus AM457_18215 PF00009 Elongation factor Tu GTP binding domain AM457_18220 PF13302 Acetyltransferase (GNAT) domain AM457_18230 PF13180 PDZ domain AM457_18235 PF00890 FAD binding domain AM457_18235 PF02910 Fumarate reductase flavoprotein C-term AM457_18245 PF02223 Thymidylate kinase AM457_18250 PF02618 YceG-like family AM457_18255 PF01063 Amino-transferase class IV AM457_18270 PF00528 Binding-protein-dependent transport system inner membrane component AM457_18275 PF00528 Binding-protein-dependent transport system inner membrane component AM457_18280 PF00005 ABC transporter AM457_18280 PF12857 TOBE-like domain AM457_18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM457_18285 PF03466 LysR substrate binding domain AM457_18295 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM457_18295 PF14602 Hexapeptide repeat of succinyl-transferase AM457_18295 PF00132 Bacterial transferase hexapeptide (six repeats) AM457_18305 PF06508 Queuosine biosynthesis protein QueC AM457_18320 PF00578 AhpC/TSA family AM457_18330 PF01467 Cytidylyltransferase-like AM457_18330 PF00293 NUDIX domain AM457_18335 PF00378 Enoyl-CoA hydratase/isomerase AM457_18340 PF01784 NIF3 (NGG1p interacting factor 3) AM457_18360 PF02769 AIR synthase related protein, C-terminal domain AM457_18360 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM457_18360 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AM457_18365 PF01966 HD domain AM457_18370 PF01330 RuvA N terminal domain AM457_18370 PF07499 RuvA, C-terminal domain AM457_18375 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM457_18375 PF17864 RuvB AAA lid domain AM457_18375 PF05491 RuvB C-terminal winged helix domain AM457_18380 PF01546 Peptidase family M20/M25/M40 AM457_18380 PF07687 Peptidase dimerisation domain AM457_18385 PF03061 Thioesterase superfamily AM457_18390 PF01618 MotA/TolQ/ExbB proton channel family AM457_18395 PF02472 Biopolymer transport protein ExbD/TolR AM457_18405 PF07676 WD40-like Beta Propeller Repeat AM457_18405 PF04052 TolB amino-terminal domain AM457_18410 PF00691 OmpA family AM457_18420 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AM457_18425 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM457_18425 PF00588 SpoU rRNA Methylase family AM457_18455 PF00308 Bacterial dnaA protein AM457_18455 PF08299 Bacterial dnaA protein helix-turn-helix AM457_18455 PF11638 DnaA N-terminal domain AM457_18460 PF01594 AI-2E family transporter AM457_18465 PF00586 AIR synthase related protein, N-terminal domain AM457_18465 PF02769 AIR synthase related protein, C-terminal domain AM457_18470 PF00551 Formyl transferase AM457_18475 PF12697 Alpha/beta hydrolase family AM457_18480 PF06965 Na+/H+ antiporter 1 AM457_18480 PF01343 Peptidase family S49 AM457_18490 PF13567 Domain of unknown function (DUF4131) AM457_18490 PF00753 Metallo-beta-lactamase superfamily AM457_18490 PF03772 Competence protein AM457_18495 PF00005 ABC transporter AM457_18500 PF02687 FtsX-like permease family AM457_18500 PF12704 MacB-like periplasmic core domain AM457_18510 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AM457_18520 PF00266 Aminotransferase class-V