locus-tag class description AYP_000001 PF08299 Bacterial dnaA protein helix-turn-helix AYP_000001 PF11638 DnaA N-terminal domain AYP_000001 PF00308 Bacterial dnaA protein AYP_000002 PF02768 DNA polymerase III beta subunit, C-terminal domain AYP_000002 PF02767 DNA polymerase III beta subunit, central domain AYP_000002 PF00712 DNA polymerase III beta subunit, N-terminal domain AYP_000003 PF02463 RecF/RecN/SMC N terminal domain AYP_000004 PF01751 Toprim domain AYP_000004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000004 PF00986 DNA gyrase B subunit, carboxyl terminus AYP_000004 PF18053 DNA gyrase B subunit insert domain AYP_000004 PF00204 DNA gyrase B AYP_000006 PF09335 SNARE associated Golgi protein AYP_000007 PF00005 ABC transporter AYP_000007 PF12848 ABC transporter AYP_000011 PF01521 Iron-sulphur cluster biosynthesis AYP_000012 PF00561 alpha/beta hydrolase fold AYP_000013 PF03702 Anhydro-N-acetylmuramic acid kinase AYP_000014 PF00579 tRNA synthetases class I (W and Y) AYP_000023 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_000024 PF01252 Signal peptidase (SPase) II AYP_000025 PF00133 tRNA synthetases class I (I, L, M and V) AYP_000025 PF08264 Anticodon-binding domain of tRNA AYP_000025 PF06827 Zinc finger found in FPG and IleRS AYP_000026 PF06574 FAD synthetase AYP_000026 PF01687 Riboflavin kinase AYP_000028 PF01048 Phosphorylase superfamily AYP_000029 PF00440 Bacterial regulatory proteins, tetR family AYP_000029 PF08362 YcdC-like protein, C-terminal region AYP_000030 PF00005 ABC transporter AYP_000031 PF00528 Binding-protein-dependent transport system inner membrane component AYP_000032 PF00296 Luciferase-like monooxygenase AYP_000033 PF09084 NMT1/THI5 like AYP_000034 PF09084 NMT1/THI5 like AYP_000035 PF00583 Acetyltransferase (GNAT) family AYP_000035 PF00696 Amino acid kinase family AYP_000038 PF00106 short chain dehydrogenase AYP_000039 PF13419 Haloacid dehalogenase-like hydrolase AYP_000041 PF01323 DSBA-like thioredoxin domain AYP_000042 PF00440 Bacterial regulatory proteins, tetR family AYP_000042 PF08360 QacR-like protein, C-terminal region AYP_000043 PF00440 Bacterial regulatory proteins, tetR family AYP_000044 PF00175 Oxidoreductase NAD-binding domain AYP_000045 PF00487 Fatty acid desaturase AYP_000046 PF01138 3' exoribonuclease family, domain 1 AYP_000046 PF03725 3' exoribonuclease family, domain 2 AYP_000051 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYP_000051 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYP_000052 PF01510 N-acetylmuramoyl-L-alanine amidase AYP_000053 PF03023 Lipid II flippase MurJ AYP_000054 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_000054 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYP_000055 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_000055 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYP_000056 PF13807 G-rich domain on putative tyrosine kinase AYP_000056 PF02706 Chain length determinant protein AYP_000056 PF13614 AAA domain AYP_000057 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYP_000058 PF02563 Polysaccharide biosynthesis/export protein AYP_000058 PF10531 SLBB domain AYP_000058 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AYP_000059 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYP_000059 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYP_000059 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYP_000060 PF02719 Polysaccharide biosynthesis protein AYP_000061 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYP_000062 PF02348 Cytidylyltransferase AYP_000065 PF03102 NeuB family AYP_000065 PF08666 SAF domain AYP_000071 PF00535 Glycosyl transferase family 2 AYP_000072 PF02397 Bacterial sugar transferase AYP_000073 PF00483 Nucleotidyl transferase AYP_000074 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYP_000074 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYP_000074 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYP_000075 PF00342 Phosphoglucose isomerase AYP_000076 PF16363 GDP-mannose 4,6 dehydratase AYP_000077 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_000077 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_000077 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_000077 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_000079 PF02652 L-lactate permease AYP_000080 PF07729 FCD domain AYP_000080 PF00392 Bacterial regulatory proteins, gntR family AYP_000081 PF01070 FMN-dependent dehydrogenase AYP_000082 PF09330 D-lactate dehydrogenase, membrane binding AYP_000082 PF01565 FAD binding domain AYP_000083 PF00155 Aminotransferase class I and II AYP_000084 PF07729 FCD domain AYP_000084 PF00392 Bacterial regulatory proteins, gntR family AYP_000086 PF00285 Citrate synthase, C-terminal domain AYP_000087 PF00694 Aconitase C-terminal domain AYP_000087 PF00330 Aconitase family (aconitate hydratase) AYP_000092 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_000092 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_000094 PF08361 MAATS-type transcriptional repressor, C-terminal region AYP_000094 PF00440 Bacterial regulatory proteins, tetR family AYP_000097 PF00849 RNA pseudouridylate synthase AYP_000100 PF07715 TonB-dependent Receptor Plug Domain AYP_000100 PF00593 TonB dependent receptor AYP_000102 PF01037 Lrp/AsnC ligand binding domain AYP_000103 PF01266 FAD dependent oxidoreductase AYP_000104 PF01168 Alanine racemase, N-terminal domain AYP_000104 PF00842 Alanine racemase, C-terminal domain AYP_000105 PF01042 Endoribonuclease L-PSP AYP_000106 PF00324 Amino acid permease AYP_000107 PF00324 Amino acid permease AYP_000109 PF00171 Aldehyde dehydrogenase family AYP_000110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_000110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_000111 PF00501 AMP-binding enzyme AYP_000111 PF13193 AMP-binding enzyme C-terminal domain AYP_000112 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_000112 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_000112 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_000113 PF00378 Enoyl-CoA hydratase/isomerase AYP_000114 PF00378 Enoyl-CoA hydratase/isomerase AYP_000115 PF07690 Major Facilitator Superfamily AYP_000115 PF00083 Sugar (and other) transporter AYP_000116 PF00765 Autoinducer synthase AYP_000118 PF03472 Autoinducer binding domain AYP_000118 PF00196 Bacterial regulatory proteins, luxR family AYP_000119 PF00501 AMP-binding enzyme AYP_000120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_000120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_000120 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_000121 PF00550 Phosphopantetheine attachment site AYP_000121 PF08242 Methyltransferase domain AYP_000121 PF14765 Polyketide synthase dehydratase AYP_000121 PF00975 Thioesterase domain AYP_000121 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_000121 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_000121 PF16197 Ketoacyl-synthetase C-terminal extension AYP_000122 PF13193 AMP-binding enzyme C-terminal domain AYP_000122 PF00668 Condensation domain AYP_000122 PF00550 Phosphopantetheine attachment site AYP_000122 PF07993 Male sterility protein AYP_000122 PF00501 AMP-binding enzyme AYP_000123 PF00501 AMP-binding enzyme AYP_000123 PF00550 Phosphopantetheine attachment site AYP_000123 PF00668 Condensation domain AYP_000123 PF13193 AMP-binding enzyme C-terminal domain AYP_000123 PF00975 Thioesterase domain AYP_000126 PF12697 Alpha/beta hydrolase family AYP_000127 PF01648 4'-phosphopantetheinyl transferase superfamily AYP_000130 PF01722 BolA-like protein AYP_000132 PF13614 AAA domain AYP_000135 PF09335 SNARE associated Golgi protein AYP_000136 PF07681 DoxX AYP_000137 PF04286 Protein of unknown function (DUF445) AYP_000138 PF02540 NAD synthase AYP_000138 PF00958 GMP synthase C terminal domain AYP_000138 PF00117 Glutamine amidotransferase class-I AYP_000139 PF13427 Domain of unknown function (DUF4111) AYP_000139 PF01909 Nucleotidyltransferase domain AYP_000140 PF03551 Transcriptional regulator PadR-like family AYP_000142 PF02678 Pirin AYP_000142 PF05726 Pirin C-terminal cupin domain AYP_000146 PF00750 tRNA synthetases class I (R) AYP_000146 PF05746 DALR anticodon binding domain AYP_000146 PF03485 Arginyl tRNA synthetase N terminal domain AYP_000147 PF00390 Malic enzyme, N-terminal domain AYP_000147 PF03949 Malic enzyme, NAD binding domain AYP_000149 PF04261 Dyp-type peroxidase family AYP_000150 PF01810 LysE type translocator AYP_000151 PF00950 ABC 3 transport family AYP_000152 PF00005 ABC transporter AYP_000156 PF00119 ATP synthase A chain AYP_000157 PF00137 ATP synthase subunit C AYP_000158 PF00430 ATP synthase B/B' CF(0) AYP_000159 PF00213 ATP synthase delta (OSCP) subunit AYP_000160 PF00306 ATP synthase alpha/beta chain, C terminal domain AYP_000160 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYP_000160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYP_000161 PF00231 ATP synthase AYP_000162 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYP_000162 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYP_000163 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYP_000165 PF00255 Glutathione peroxidase AYP_000167 PF07690 Major Facilitator Superfamily AYP_000168 PF00440 Bacterial regulatory proteins, tetR family AYP_000169 PF00892 EamA-like transporter family AYP_000170 PF01300 Telomere recombination AYP_000171 PF02481 DNA recombination-mediator protein A AYP_000171 PF17782 DprA winged helix domain AYP_000173 PF01327 Polypeptide deformylase AYP_000178 PF00440 Bacterial regulatory proteins, tetR family AYP_000185 PF00291 Pyridoxal-phosphate dependent enzyme AYP_000187 PF03358 NADPH-dependent FMN reductase AYP_000191 PF08497 Radical SAM N-terminal AYP_000191 PF04055 Radical SAM superfamily AYP_000191 PF11842 Domain of unknown function (DUF3362) AYP_000194 PF00817 impB/mucB/samB family AYP_000194 PF11799 impB/mucB/samB family C-terminal domain AYP_000194 PF11798 IMS family HHH motif AYP_000196 PF07690 Major Facilitator Superfamily AYP_000197 PF03641 Possible lysine decarboxylase AYP_000199 PF03471 Transporter associated domain AYP_000199 PF03741 Integral membrane protein TerC family AYP_000200 PF02810 SEC-C motif AYP_000201 PF03458 UPF0126 domain AYP_000202 PF07690 Major Facilitator Superfamily AYP_000203 PF00521 DNA gyrase/topoisomerase IV, subunit A AYP_000203 PF03989 DNA gyrase C-terminal domain, beta-propeller AYP_000204 PF00501 AMP-binding enzyme AYP_000204 PF13193 AMP-binding enzyme C-terminal domain AYP_000207 PF00719 Inorganic pyrophosphatase AYP_000208 PF03573 outer membrane porin, OprD family AYP_000211 PF00701 Dihydrodipicolinate synthetase family AYP_000213 PF00155 Aminotransferase class I and II AYP_000213 PF00392 Bacterial regulatory proteins, gntR family AYP_000214 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYP_000214 PF01078 Magnesium chelatase, subunit ChlI AYP_000216 PF00665 Integrase core domain AYP_000220 PF00809 Pterin binding enzyme AYP_000221 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_000221 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_000221 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_000221 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_000223 PF00665 Integrase core domain AYP_000229 PF00582 Universal stress protein family AYP_000230 PF00916 Sulfate permease family AYP_000230 PF01740 STAS domain AYP_000232 PF07690 Major Facilitator Superfamily AYP_000233 PF02909 Tetracyclin repressor-like, C-terminal domain AYP_000233 PF00440 Bacterial regulatory proteins, tetR family AYP_000236 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYP_000237 PF01636 Phosphotransferase enzyme family AYP_000239 PF01078 Magnesium chelatase, subunit ChlI AYP_000239 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYP_000241 PF00543 Nitrogen regulatory protein P-II AYP_000242 PF00909 Ammonium Transporter Family AYP_000243 PF03477 ATP cone domain AYP_000244 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYP_000244 PF01872 RibD C-terminal domain AYP_000246 PF00677 Lumazine binding domain AYP_000250 PF00883 Cytosol aminopeptidase family, catalytic domain AYP_000250 PF02789 Cytosol aminopeptidase family, N-terminal domain AYP_000252 PF03739 Lipopolysaccharide export system permease LptF/LptG AYP_000253 PF01676 Metalloenzyme superfamily AYP_000253 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYP_000254 PF03572 Peptidase family S41 AYP_000254 PF00595 PDZ domain AYP_000255 PF00072 Response regulator receiver domain AYP_000255 PF00158 Sigma-54 interaction domain AYP_000255 PF02954 Bacterial regulatory protein, Fis family AYP_000256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000256 PF00512 His Kinase A (phospho-acceptor) domain AYP_000257 PF00072 Response regulator receiver domain AYP_000257 PF00196 Bacterial regulatory proteins, luxR family AYP_000258 PF00768 D-alanyl-D-alanine carboxypeptidase AYP_000259 PF00291 Pyridoxal-phosphate dependent enzyme AYP_000260 PF03447 Homoserine dehydrogenase, NAD binding domain AYP_000260 PF00742 Homoserine dehydrogenase AYP_000260 PF01842 ACT domain AYP_000261 PF10411 Disulfide bond isomerase protein N-terminus AYP_000261 PF13098 Thioredoxin-like domain AYP_000262 PF00589 Phage integrase family AYP_000262 PF02899 Phage integrase, N-terminal SAM-like domain AYP_000264 PF07664 Ferrous iron transport protein B C terminus AYP_000264 PF02421 Ferrous iron transport protein B AYP_000264 PF07670 Nucleoside recognition AYP_000266 PF02875 Mur ligase family, glutamate ligase domain AYP_000266 PF08245 Mur ligase middle domain AYP_000267 PF01098 Cell cycle protein AYP_000268 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYP_000269 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYP_000270 PF00149 Calcineurin-like phosphoesterase AYP_000271 PF00293 NUDIX domain AYP_000272 PF01964 Radical SAM ThiC family AYP_000272 PF13667 ThiC-associated domain AYP_000277 PF02321 Outer membrane efflux protein AYP_000278 PF01895 PhoU domain AYP_000279 PF04362 Bacterial Fe(2+) trafficking AYP_000280 PF14698 Argininosuccinate lyase C-terminal AYP_000280 PF00206 Lyase AYP_000281 PF07694 5TMR of 5TMR-LYT AYP_000281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000281 PF06580 Histidine kinase AYP_000282 PF04397 LytTr DNA-binding domain AYP_000282 PF00072 Response regulator receiver domain AYP_000283 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYP_000283 PF03900 Porphobilinogen deaminase, C-terminal domain AYP_000288 PF00816 H-NS histone family AYP_000291 PF00263 Bacterial type II and III secretion system protein AYP_000291 PF03958 Bacterial type II/III secretion system short domain AYP_000292 PF00498 FHA domain AYP_000292 PF12401 Protein of unknown function (DUF2662) AYP_000293 PF13419 Haloacid dehalogenase-like hydrolase AYP_000294 PF04715 Anthranilate synthase component I, N terminal region AYP_000294 PF00425 chorismate binding enzyme AYP_000299 PF00009 Elongation factor Tu GTP binding domain AYP_000299 PF03143 Elongation factor Tu C-terminal domain AYP_000299 PF03144 Elongation factor Tu domain 2 AYP_000301 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYP_000302 PF00467 KOW motif AYP_000302 PF02357 Transcription termination factor nusG AYP_000303 PF03946 Ribosomal protein L11, N-terminal domain AYP_000303 PF00298 Ribosomal protein L11, RNA binding domain AYP_000304 PF00687 Ribosomal protein L1p/L10e family AYP_000305 PF00466 Ribosomal protein L10 AYP_000306 PF16320 Ribosomal protein L7/L12 dimerisation domain AYP_000306 PF00542 Ribosomal protein L7/L12 C-terminal domain AYP_000307 PF04561 RNA polymerase Rpb2, domain 2 AYP_000307 PF04563 RNA polymerase beta subunit AYP_000307 PF04565 RNA polymerase Rpb2, domain 3 AYP_000307 PF00562 RNA polymerase Rpb2, domain 6 AYP_000307 PF04560 RNA polymerase Rpb2, domain 7 AYP_000307 PF10385 RNA polymerase beta subunit external 1 domain AYP_000308 PF05000 RNA polymerase Rpb1, domain 4 AYP_000308 PF04997 RNA polymerase Rpb1, domain 1 AYP_000308 PF00623 RNA polymerase Rpb1, domain 2 AYP_000308 PF04983 RNA polymerase Rpb1, domain 3 AYP_000308 PF04998 RNA polymerase Rpb1, domain 5 AYP_000314 PF00561 alpha/beta hydrolase fold AYP_000315 PF03553 Na+/H+ antiporter family AYP_000315 PF13726 Na+-H+ antiporter family AYP_000318 PF00183 Hsp90 protein AYP_000318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000321 PF01323 DSBA-like thioredoxin domain AYP_000323 PF09278 MerR, DNA binding AYP_000323 PF00376 MerR family regulatory protein AYP_000327 PF00108 Thiolase, N-terminal domain AYP_000327 PF02803 Thiolase, C-terminal domain AYP_000328 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_000328 PF00378 Enoyl-CoA hydratase/isomerase AYP_000328 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_000332 PF01541 GIY-YIG catalytic domain AYP_000332 PF02151 UvrB/uvrC motif AYP_000332 PF08459 UvrC Helix-hairpin-helix N-terminal AYP_000334 PF01066 CDP-alcohol phosphatidyltransferase AYP_000335 PF12833 Helix-turn-helix domain AYP_000335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYP_000335 PF02805 Metal binding domain of Ada AYP_000335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYP_000340 PF13533 Biotin-lipoyl like AYP_000341 PF03652 Holliday junction resolvase AYP_000342 PF02622 Uncharacterized ACR, COG1678 AYP_000343 PF02463 RecF/RecN/SMC N terminal domain AYP_000345 PF06865 Pyrimidine/purine nucleoside phosphorylase AYP_000346 PF00588 SpoU rRNA Methylase family AYP_000346 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYP_000348 PF01121 Dephospho-CoA kinase AYP_000349 PF01478 Type IV leader peptidase family AYP_000349 PF06750 Bacterial Peptidase A24 N-terminal domain AYP_000350 PF00482 Type II secretion system (T2SS), protein F AYP_000351 PF00437 Type II/IV secretion system protein AYP_000351 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYP_000352 PF00121 Triosephosphate isomerase AYP_000353 PF03840 Preprotein translocase SecG subunit AYP_000357 PF02576 RimP N-terminal domain AYP_000357 PF17384 RimP C-terminal SH3 domain AYP_000358 PF00575 S1 RNA binding domain AYP_000358 PF13184 NusA-like KH domain AYP_000358 PF08529 NusA N-terminal domain AYP_000359 PF11987 Translation-initiation factor 2 AYP_000359 PF08364 Bacterial translation initiation factor IF-2 associated region AYP_000359 PF04760 Translation initiation factor IF-2, N-terminal region AYP_000359 PF00009 Elongation factor Tu GTP binding domain AYP_000360 PF02033 Ribosome-binding factor A AYP_000362 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AYP_000364 PF00361 Proton-conducting membrane transporter AYP_000365 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYP_000366 PF13244 Domain of unknown function (DUF4040) AYP_000366 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AYP_000366 PF00361 Proton-conducting membrane transporter AYP_000366 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYP_000369 PF01502 Phosphoribosyl-AMP cyclohydrolase AYP_000370 PF01494 FAD binding domain AYP_000371 PF03109 ABC1 family AYP_000373 PF01209 ubiE/COQ5 methyltransferase family AYP_000375 PF03976 Polyphosphate kinase 2 (PPK2) AYP_000377 PF17946 RecC C-terminal domain AYP_000378 PF13361 UvrD-like helicase C-terminal domain AYP_000378 PF00580 UvrD/REP helicase N-terminal domain AYP_000378 PF12705 PD-(D/E)XK nuclease superfamily AYP_000379 PF13538 UvrD-like helicase C-terminal domain AYP_000382 PF00312 Ribosomal protein S15 AYP_000383 PF01138 3' exoribonuclease family, domain 1 AYP_000383 PF03725 3' exoribonuclease family, domain 2 AYP_000383 PF00013 KH domain AYP_000383 PF00575 S1 RNA binding domain AYP_000383 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYP_000384 PF01544 CorA-like Mg2+ transporter protein AYP_000386 PF01556 DnaJ C terminal domain AYP_000386 PF00226 DnaJ domain AYP_000388 PF01430 Hsp33 protein AYP_000389 PF02254 TrkA-N domain AYP_000389 PF00999 Sodium/hydrogen exchanger family AYP_000390 PF00270 DEAD/DEAH box helicase AYP_000390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYP_000390 PF18074 Primosomal protein N C-terminal domain AYP_000390 PF00271 Helicase conserved C-terminal domain AYP_000390 PF17764 3′ DNA-binding domain (3′BD) AYP_000391 PF00482 Type II secretion system (T2SS), protein F AYP_000392 PF08334 Type II secretion system (T2SS), protein G AYP_000392 PF07963 Prokaryotic N-terminal methylation motif AYP_000394 PF01588 Putative tRNA binding domain AYP_000395 PF00795 Carbon-nitrogen hydrolase AYP_000396 PF00571 CBS domain AYP_000396 PF03471 Transporter associated domain AYP_000397 PF01206 Sulfurtransferase TusA AYP_000400 PF01177 Asp/Glu/Hydantoin racemase AYP_000402 PF00762 Ferrochelatase AYP_000403 PF00753 Metallo-beta-lactamase superfamily AYP_000404 PF03884 DNA gyrase inhibitor YacG AYP_000408 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYP_000410 PF01197 Ribosomal protein L31 AYP_000411 PF03109 ABC1 family AYP_000412 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_000412 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_000413 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_000413 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_000413 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_000414 PF01554 MatE AYP_000416 PF04055 Radical SAM superfamily AYP_000416 PF06969 HemN C-terminal domain AYP_000417 PF00106 short chain dehydrogenase AYP_000418 PF03466 LysR substrate binding domain AYP_000418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000421 PF13193 AMP-binding enzyme C-terminal domain AYP_000421 PF00501 AMP-binding enzyme AYP_000422 PF12111 Polyribonucleotide phosphorylase C terminal AYP_000422 PF10150 Ribonuclease E/G family AYP_000422 PF00575 S1 RNA binding domain AYP_000424 PF01479 S4 domain AYP_000424 PF00849 RNA pseudouridylate synthase AYP_000425 PF13419 Haloacid dehalogenase-like hydrolase AYP_000426 PF08279 HTH domain AYP_000426 PF13280 WYL domain AYP_000427 PF02798 Glutathione S-transferase, N-terminal domain AYP_000429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000429 PF03466 LysR substrate binding domain AYP_000430 PF12706 Beta-lactamase superfamily domain AYP_000431 PF00141 Peroxidase AYP_000432 PF00391 PEP-utilising enzyme, mobile domain AYP_000432 PF05524 PEP-utilising enzyme, N-terminal AYP_000432 PF01590 GAF domain AYP_000432 PF02896 PEP-utilising enzyme, TIM barrel domain AYP_000433 PF00293 NUDIX domain AYP_000437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000437 PF03466 LysR substrate binding domain AYP_000439 PF00330 Aconitase family (aconitate hydratase) AYP_000440 PF00694 Aconitase C-terminal domain AYP_000442 PF00180 Isocitrate/isopropylmalate dehydrogenase AYP_000445 PF01176 Translation initiation factor 1A / IF-1 AYP_000447 PF01416 tRNA pseudouridine synthase AYP_000451 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYP_000451 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYP_000453 PF00375 Sodium:dicarboxylate symporter family AYP_000455 PF03279 Bacterial lipid A biosynthesis acyltransferase AYP_000456 PF01810 LysE type translocator AYP_000459 PF00107 Zinc-binding dehydrogenase AYP_000459 PF08240 Alcohol dehydrogenase GroES-like domain AYP_000460 PF01638 HxlR-like helix-turn-helix AYP_000462 PF01751 Toprim domain AYP_000462 PF01131 DNA topoisomerase AYP_000462 PF08272 Topoisomerase I zinc-ribbon-like AYP_000462 PF01396 Topoisomerase DNA binding C4 zinc finger AYP_000465 PF13361 UvrD-like helicase C-terminal domain AYP_000465 PF00580 UvrD/REP helicase N-terminal domain AYP_000466 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AYP_000470 PF00999 Sodium/hydrogen exchanger family AYP_000470 PF02254 TrkA-N domain AYP_000471 PF00471 Ribosomal protein L33 AYP_000472 PF00830 Ribosomal L28 family AYP_000473 PF00171 Aldehyde dehydrogenase family AYP_000475 PF01842 ACT domain AYP_000475 PF00551 Formyl transferase AYP_000477 PF01618 MotA/TolQ/ExbB proton channel family AYP_000479 PF01625 Peptide methionine sulfoxide reductase AYP_000481 PF00186 Dihydrofolate reductase AYP_000482 PF00303 Thymidylate synthase AYP_000485 PF01790 Prolipoprotein diacylglyceryl transferase AYP_000489 PF00902 Sec-independent protein translocase protein (TatC) AYP_000490 PF02416 mttA/Hcf106 family AYP_000491 PF02416 mttA/Hcf106 family AYP_000493 PF01725 Ham1 family AYP_000495 PF00561 alpha/beta hydrolase fold AYP_000495 PF07021 Methionine biosynthesis protein MetW AYP_000496 PF00561 alpha/beta hydrolase fold AYP_000497 PF08502 LeuA allosteric (dimerisation) domain AYP_000497 PF00682 HMGL-like AYP_000498 PF18331 PKHD-type hydroxylase C-terminal domain AYP_000498 PF13640 2OG-Fe(II) oxygenase superfamily AYP_000499 PF00593 TonB dependent receptor AYP_000499 PF07715 TonB-dependent Receptor Plug Domain AYP_000500 PF05697 Bacterial trigger factor protein (TF) AYP_000500 PF05698 Bacterial trigger factor protein (TF) C-terminus AYP_000500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_000501 PF00574 Clp protease AYP_000502 PF07724 AAA domain (Cdc48 subfamily) AYP_000502 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_000502 PF06689 ClpX C4-type zinc finger AYP_000505 PF05683 Fumarase C-terminus AYP_000505 PF05681 Fumarate hydratase (Fumerase) AYP_000506 PF07085 DRTGG domain AYP_000506 PF01515 Phosphate acetyl/butaryl transferase AYP_000507 PF00871 Acetokinase family AYP_000508 PF00920 Dehydratase family AYP_000509 PF01081 KDPG and KHG aldolase AYP_000510 PF02447 GntP family permease AYP_000511 PF01202 Shikimate kinase AYP_000512 PF00171 Aldehyde dehydrogenase family AYP_000513 PF00171 Aldehyde dehydrogenase family AYP_000514 PF00561 alpha/beta hydrolase fold AYP_000516 PF00933 Glycosyl hydrolase family 3 N terminal domain AYP_000517 PF17804 Tail specific protease N-terminal domain AYP_000517 PF11818 C-terminal domain of tail specific protease (DUF3340) AYP_000517 PF00595 PDZ domain AYP_000517 PF03572 Peptidase family S41 AYP_000518 PF00534 Glycosyl transferases group 1 AYP_000518 PF13439 Glycosyltransferase Family 4 AYP_000519 PF01569 PAP2 superfamily AYP_000520 PF04384 Iron-sulphur cluster assembly AYP_000521 PF00334 Nucleoside diphosphate kinase AYP_000522 PF04055 Radical SAM superfamily AYP_000524 PF13464 Domain of unknown function (DUF4115) AYP_000525 PF04551 GcpE protein AYP_000526 PF03129 Anticodon binding domain AYP_000526 PF13393 Histidyl-tRNA synthetase AYP_000528 PF13360 PQQ-like domain AYP_000529 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYP_000529 PF01926 50S ribosome-binding GTPase AYP_000532 PF00550 Phosphopantetheine attachment site AYP_000533 PF00550 Phosphopantetheine attachment site AYP_000535 PF00501 AMP-binding enzyme AYP_000535 PF13193 AMP-binding enzyme C-terminal domain AYP_000538 PF00221 Aromatic amino acid lyase AYP_000542 PF04820 Tryptophan halogenase AYP_000544 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_000544 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_000547 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_000547 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_000550 PF02556 Preprotein translocase subunit SecB AYP_000551 PF00462 Glutaredoxin AYP_000553 PF03193 RsgA GTPase AYP_000554 PF00929 Exonuclease AYP_000557 PF02321 Outer membrane efflux protein AYP_000558 PF02687 FtsX-like permease family AYP_000558 PF00005 ABC transporter AYP_000558 PF12704 MacB-like periplasmic core domain AYP_000559 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_000562 PF09334 tRNA synthetases class I (M) AYP_000562 PF13603 Leucyl-tRNA synthetase, Domain 2 AYP_000562 PF00133 tRNA synthetases class I (I, L, M and V) AYP_000562 PF08264 Anticodon-binding domain of tRNA AYP_000564 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYP_000564 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYP_000564 PF00205 Thiamine pyrophosphate enzyme, central domain AYP_000565 PF10369 Small subunit of acetolactate synthase AYP_000566 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYP_000566 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYP_000567 PF00563 EAL domain AYP_000567 PF00990 Diguanylate cyclase, GGDEF domain AYP_000567 PF03707 Bacterial signalling protein N terminal repeat AYP_000571 PF00009 Elongation factor Tu GTP binding domain AYP_000571 PF03144 Elongation factor Tu domain 2 AYP_000571 PF16658 Class II release factor RF3, C-terminal domain AYP_000574 PF01026 TatD related DNase AYP_000575 PF00330 Aconitase family (aconitate hydratase) AYP_000575 PF00694 Aconitase C-terminal domain AYP_000577 PF00899 ThiF family AYP_000579 PF03466 LysR substrate binding domain AYP_000579 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000581 PF01207 Dihydrouridine synthase (Dus) AYP_000582 PF07690 Major Facilitator Superfamily AYP_000584 PF00892 EamA-like transporter family AYP_000585 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYP_000585 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYP_000586 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AYP_000587 PF02233 NAD(P) transhydrogenase beta subunit AYP_000588 PF00106 short chain dehydrogenase AYP_000590 PF01261 Xylose isomerase-like TIM barrel AYP_000591 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_000591 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_000594 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_000594 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_000595 PF00378 Enoyl-CoA hydratase/isomerase AYP_000596 PF00072 Response regulator receiver domain AYP_000596 PF01627 Hpt domain AYP_000596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000596 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYP_000596 PF00672 HAMP domain AYP_000596 PF00512 His Kinase A (phospho-acceptor) domain AYP_000597 PF00291 Pyridoxal-phosphate dependent enzyme AYP_000599 PF05958 tRNA (Uracil-5-)-methyltransferase AYP_000600 PF04607 Region found in RelA / SpoT proteins AYP_000600 PF02824 TGS domain AYP_000600 PF13291 ACT domain AYP_000602 PF03819 MazG nucleotide pyrophosphohydrolase domain AYP_000604 PF01743 Poly A polymerase head domain AYP_000604 PF12627 Probable RNA and SrmB- binding site of polymerase A AYP_000604 PF12626 Polymerase A arginine-rich C-terminus AYP_000605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYP_000606 PF02548 Ketopantoate hydroxymethyltransferase AYP_000607 PF02569 Pantoate-beta-alanine ligase AYP_000608 PF03668 P-loop ATPase protein family AYP_000609 PF00381 PTS HPr component phosphorylation site AYP_000610 PF04751 Protein of unknown function (DUF615) AYP_000611 PF13193 AMP-binding enzyme C-terminal domain AYP_000611 PF00501 AMP-binding enzyme AYP_000612 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYP_000612 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYP_000612 PF02824 TGS domain AYP_000612 PF03129 Anticodon binding domain AYP_000613 PF00707 Translation initiation factor IF-3, C-terminal domain AYP_000613 PF05198 Translation initiation factor IF-3, N-terminal domain AYP_000614 PF00043 Glutathione S-transferase, C-terminal domain AYP_000614 PF02798 Glutathione S-transferase, N-terminal domain AYP_000615 PF09335 SNARE associated Golgi protein AYP_000616 PF07690 Major Facilitator Superfamily AYP_000617 PF01632 Ribosomal protein L35 AYP_000618 PF00453 Ribosomal protein L20 AYP_000622 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYP_000622 PF01409 tRNA synthetases class II core domain (F) AYP_000623 PF01588 Putative tRNA binding domain AYP_000623 PF03483 B3/4 domain AYP_000623 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYP_000623 PF03147 Ferredoxin-fold anticodon binding domain AYP_000623 PF03484 tRNA synthetase B5 domain AYP_000624 PF00216 Bacterial DNA-binding protein AYP_000626 PF07497 Rho termination factor, RNA-binding domain AYP_000626 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYP_000626 PF07498 Rho termination factor, N-terminal domain AYP_000627 PF00085 Thioredoxin AYP_000628 PF02541 Ppx/GppA phosphatase family AYP_000629 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYP_000630 PF01171 PP-loop family AYP_000630 PF11734 TilS substrate C-terminal domain AYP_000630 PF09179 TilS substrate binding domain AYP_000631 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYP_000631 PF03807 NADP oxidoreductase coenzyme F420-dependent AYP_000632 PF02325 YGGT family AYP_000633 PF01367 5'-3' exonuclease, C-terminal SAM fold AYP_000633 PF01612 3'-5' exonuclease AYP_000633 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYP_000633 PF00476 DNA polymerase family A AYP_000637 PF00437 Type II/IV secretion system protein AYP_000638 PF02566 OsmC-like protein AYP_000639 PF01047 MarR family AYP_000641 PF00795 Carbon-nitrogen hydrolase AYP_000650 PF04963 Sigma-54 factor, core binding domain AYP_000650 PF00309 Sigma-54 factor, Activator interacting domain (AID) AYP_000650 PF04552 Sigma-54, DNA binding domain AYP_000651 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYP_000652 PF01722 BolA-like protein AYP_000653 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYP_000654 PF01634 ATP phosphoribosyltransferase AYP_000655 PF00815 Histidinol dehydrogenase AYP_000656 PF00155 Aminotransferase class I and II AYP_000657 PF00425 chorismate binding enzyme AYP_000657 PF04715 Anthranilate synthase component I, N terminal region AYP_000666 PF00293 NUDIX domain AYP_000667 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_000668 PF00814 Glycoprotease family AYP_000669 PF04445 Putative SAM-dependent methyltransferase AYP_000671 PF00756 Putative esterase AYP_000673 PF00834 Ribulose-phosphate 3 epimerase family AYP_000676 PF07731 Multicopper oxidase AYP_000676 PF00394 Multicopper oxidase AYP_000676 PF07732 Multicopper oxidase AYP_000677 PF05275 Copper resistance protein B precursor (CopB) AYP_000679 PF00893 Small Multidrug Resistance protein AYP_000680 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYP_000680 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYP_000681 PF01960 ArgJ family AYP_000682 PF02445 Quinolinate synthetase A protein AYP_000687 PF00962 Adenosine/AMP deaminase AYP_000688 PF00107 Zinc-binding dehydrogenase AYP_000688 PF08240 Alcohol dehydrogenase GroES-like domain AYP_000689 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000689 PF03466 LysR substrate binding domain AYP_000690 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_000690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_000690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_000691 PF07690 Major Facilitator Superfamily AYP_000692 PF02515 CoA-transferase family III AYP_000694 PF14537 Cytochrome c3 AYP_000694 PF00890 FAD binding domain AYP_000695 PF03466 LysR substrate binding domain AYP_000695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000697 PF07690 Major Facilitator Superfamily AYP_000698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000698 PF03466 LysR substrate binding domain AYP_000700 PF01546 Peptidase family M20/M25/M40 AYP_000700 PF07687 Peptidase dimerisation domain AYP_000701 PF12833 Helix-turn-helix domain AYP_000701 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYP_000703 PF01810 LysE type translocator AYP_000704 PF03466 LysR substrate binding domain AYP_000704 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000706 PF08267 Cobalamin-independent synthase, N-terminal domain AYP_000706 PF01717 Cobalamin-independent synthase, Catalytic domain AYP_000707 PF01613 Flavin reductase like domain AYP_000711 PF02567 Phenazine biosynthesis-like protein AYP_000715 PF01011 PQQ enzyme repeat AYP_000715 PF13360 PQQ-like domain AYP_000727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000727 PF13756 Stimulus-sensing domain AYP_000727 PF13755 Sensor N-terminal transmembrane domain AYP_000727 PF00672 HAMP domain AYP_000727 PF00512 His Kinase A (phospho-acceptor) domain AYP_000729 PF00268 Ribonucleotide reductase, small chain AYP_000731 PF02867 Ribonucleotide reductase, barrel domain AYP_000731 PF03477 ATP cone domain AYP_000731 PF00317 Ribonucleotide reductase, all-alpha domain AYP_000732 PF00072 Response regulator receiver domain AYP_000732 PF00486 Transcriptional regulatory protein, C terminal AYP_000733 PF00672 HAMP domain AYP_000733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_000733 PF00512 His Kinase A (phospho-acceptor) domain AYP_000735 PF00990 Diguanylate cyclase, GGDEF domain AYP_000735 PF17151 Periplasmic sensor domain AYP_000736 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYP_000737 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYP_000738 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYP_000738 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYP_000740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYP_000740 PF10531 SLBB domain AYP_000740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYP_000741 PF00384 Molybdopterin oxidoreductase AYP_000741 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYP_000741 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYP_000742 PF00146 NADH dehydrogenase AYP_000743 PF12838 4Fe-4S dicluster domain AYP_000744 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYP_000745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYP_000746 PF00361 Proton-conducting membrane transporter AYP_000746 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYP_000747 PF00361 Proton-conducting membrane transporter AYP_000748 PF00361 Proton-conducting membrane transporter AYP_000750 PF00313 'Cold-shock' DNA-binding domain AYP_000751 PF03466 LysR substrate binding domain AYP_000751 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000752 PF00970 Oxidoreductase FAD-binding domain AYP_000752 PF00175 Oxidoreductase NAD-binding domain AYP_000755 PF05552 Conserved TM helix AYP_000758 PF00291 Pyridoxal-phosphate dependent enzyme AYP_000759 PF13533 Biotin-lipoyl like AYP_000764 PF01588 Putative tRNA binding domain AYP_000764 PF09334 tRNA synthetases class I (M) AYP_000766 PF10609 NUBPL iron-transfer P-loop NTPase AYP_000767 PF01048 Phosphorylase superfamily AYP_000770 PF00692 dUTPase AYP_000776 PF01207 Dihydrouridine synthase (Dus) AYP_000778 PF02978 Signal peptide binding domain AYP_000778 PF02881 SRP54-type protein, helical bundle domain AYP_000778 PF00448 SRP54-type protein, GTPase domain AYP_000779 PF03309 Type III pantothenate kinase AYP_000781 PF01925 Sulfite exporter TauE/SafE AYP_000783 PF06470 SMC proteins Flexible Hinge Domain AYP_000783 PF02463 RecF/RecN/SMC N terminal domain AYP_000785 PF00533 BRCA1 C Terminus (BRCT) domain AYP_000785 PF03120 NAD-dependent DNA ligase OB-fold domain AYP_000785 PF01653 NAD-dependent DNA ligase adenylation domain AYP_000785 PF12826 Helix-hairpin-helix motif AYP_000785 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYP_000786 PF00210 Ferritin-like domain AYP_000787 PF07690 Major Facilitator Superfamily AYP_000788 PF00982 Glycosyltransferase family 20 AYP_000789 PF02358 Trehalose-phosphatase AYP_000790 PF12697 Alpha/beta hydrolase family AYP_000790 PF08241 Methyltransferase domain AYP_000791 PF06968 Biotin and Thiamin Synthesis associated domain AYP_000791 PF00202 Aminotransferase class-III AYP_000791 PF04055 Radical SAM superfamily AYP_000792 PF00155 Aminotransferase class I and II AYP_000795 PF00849 RNA pseudouridylate synthase AYP_000795 PF01479 S4 domain AYP_000796 PF04079 Segregation and condensation complex subunit ScpB AYP_000797 PF02616 Segregation and condensation protein ScpA AYP_000798 PF01300 Telomere recombination AYP_000799 PF04315 Elongation factor P hydroxylase AYP_000800 PF02620 Large ribosomal RNA subunit accumulation protein YceD AYP_000801 PF01783 Ribosomal L32p protein family AYP_000802 PF00698 Acyl transferase domain AYP_000804 PF00550 Phosphopantetheine attachment site AYP_000805 PF01476 LysM domain AYP_000805 PF04972 BON domain AYP_000806 PF02581 Thiamine monophosphate synthase AYP_000806 PF03070 TENA/THI-4/PQQC family AYP_000806 PF08543 Phosphomethylpyrimidine kinase AYP_000808 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYP_000811 PF02261 Aspartate decarboxylase AYP_000812 PF01195 Peptidyl-tRNA hydrolase AYP_000813 PF01386 Ribosomal L25p family AYP_000814 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYP_000814 PF14572 Phosphoribosyl synthetase-associated domain AYP_000819 PF08544 GHMP kinases C terminal AYP_000819 PF00288 GHMP kinases N terminal domain AYP_000820 PF03550 Outer membrane lipoprotein LolB AYP_000822 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYP_000822 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYP_000822 PF01488 Shikimate / quinate 5-dehydrogenase AYP_000823 PF08278 DNA primase DnaG DnaB-binding AYP_000823 PF08275 DNA primase catalytic core, N-terminal domain AYP_000823 PF10410 DnaB-helicase binding domain of primase AYP_000823 PF01807 CHC2 zinc finger AYP_000824 PF13525 Outer membrane lipoprotein AYP_000825 PF01479 S4 domain AYP_000825 PF00849 RNA pseudouridylate synthase AYP_000827 PF03358 NADPH-dependent FMN reductase AYP_000828 PF01668 SmpB protein AYP_000829 PF01467 Cytidylyltransferase-like AYP_000830 PF00037 4Fe-4S binding domain AYP_000833 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000833 PF03466 LysR substrate binding domain AYP_000834 PF00180 Isocitrate/isopropylmalate dehydrogenase AYP_000835 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_000836 PF07859 alpha/beta hydrolase fold AYP_000837 PF00355 Rieske [2Fe-2S] domain AYP_000837 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_000838 PF00171 Aldehyde dehydrogenase family AYP_000839 PF00175 Oxidoreductase NAD-binding domain AYP_000839 PF00970 Oxidoreductase FAD-binding domain AYP_000839 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_000842 PF00795 Carbon-nitrogen hydrolase AYP_000842 PF02540 NAD synthase AYP_000844 PF05726 Pirin C-terminal cupin domain AYP_000844 PF02678 Pirin AYP_000846 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_000846 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_000848 PF00164 Ribosomal protein S12/S23 AYP_000849 PF00177 Ribosomal protein S7p/S5e AYP_000850 PF14492 Elongation Factor G, domain II AYP_000850 PF03764 Elongation factor G, domain IV AYP_000850 PF03144 Elongation factor Tu domain 2 AYP_000850 PF00679 Elongation factor G C-terminus AYP_000850 PF00009 Elongation factor Tu GTP binding domain AYP_000851 PF03144 Elongation factor Tu domain 2 AYP_000851 PF00009 Elongation factor Tu GTP binding domain AYP_000851 PF03143 Elongation factor Tu C-terminal domain AYP_000854 PF00583 Acetyltransferase (GNAT) family AYP_000855 PF04376 Arginine-tRNA-protein transferase, N terminus AYP_000855 PF04377 Arginine-tRNA-protein transferase, C terminus AYP_000856 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYP_000857 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_000858 PF17854 FtsK alpha domain AYP_000858 PF09397 Ftsk gamma domain AYP_000858 PF01580 FtsK/SpoIIIE family AYP_000858 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYP_000859 PF01810 LysE type translocator AYP_000863 PF03776 Septum formation topological specificity factor MinE AYP_000864 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYP_000865 PF03775 Septum formation inhibitor MinC, C-terminal domain AYP_000867 PF01553 Acyltransferase AYP_000868 PF00691 OmpA family AYP_000868 PF13488 Glycine zipper AYP_000869 PF13361 UvrD-like helicase C-terminal domain AYP_000869 PF00580 UvrD/REP helicase N-terminal domain AYP_000870 PF00692 dUTPase AYP_000871 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_000871 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_000871 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_000871 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_000872 PF00696 Amino acid kinase family AYP_000874 PF13230 Glutamine amidotransferases class-II AYP_000875 PF01814 Hemerythrin HHE cation binding domain AYP_000877 PF03658 RnfH family Ubiquitin AYP_000878 PF04355 SmpA / OmlA family AYP_000879 PF01475 Ferric uptake regulator family AYP_000880 PF00437 Type II/IV secretion system protein AYP_000881 PF00437 Type II/IV secretion system protein AYP_000882 PF01168 Alanine racemase, N-terminal domain AYP_000884 PF12320 Type 5 capsule protein repressor C-terminal domain AYP_000884 PF00149 Calcineurin-like phosphoesterase AYP_000888 PF08338 Domain of unknown function (DUF1731) AYP_000888 PF01370 NAD dependent epimerase/dehydratase family AYP_000889 PF01266 FAD dependent oxidoreductase AYP_000890 PF00490 Delta-aminolevulinic acid dehydratase AYP_000891 PF03061 Thioesterase superfamily AYP_000892 PF13533 Biotin-lipoyl like AYP_000893 PF07690 Major Facilitator Superfamily AYP_000900 PF00083 Sugar (and other) transporter AYP_000901 PF00701 Dihydrodipicolinate synthetase family AYP_000907 PF13520 Amino acid permease AYP_000908 PF02574 Homocysteine S-methyltransferase AYP_000910 PF06039 Malate:quinone oxidoreductase (Mqo) AYP_000911 PF05199 GMC oxidoreductase AYP_000911 PF00732 GMC oxidoreductase AYP_000912 PF00171 Aldehyde dehydrogenase family AYP_000913 PF00440 Bacterial regulatory proteins, tetR family AYP_000913 PF13977 BetI-type transcriptional repressor, C-terminal AYP_000914 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_000915 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_000917 PF03061 Thioesterase superfamily AYP_000919 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYP_000919 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYP_000920 PF00375 Sodium:dicarboxylate symporter family AYP_000921 PF07152 YaeQ protein AYP_000922 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_000923 PF14883 Hypothetical glycosyl hydrolase family 13 AYP_000923 PF01522 Polysaccharide deacetylase AYP_000924 PF00535 Glycosyl transferase family 2 AYP_000926 PF00378 Enoyl-CoA hydratase/isomerase AYP_000929 PF01614 Bacterial transcriptional regulator AYP_000929 PF09339 IclR helix-turn-helix domain AYP_000930 PF00355 Rieske [2Fe-2S] domain AYP_000932 PF00355 Rieske [2Fe-2S] domain AYP_000934 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_000935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_000935 PF14759 Reductase C-terminal AYP_000936 PF07690 Major Facilitator Superfamily AYP_000938 PF12697 Alpha/beta hydrolase family AYP_000940 PF01958 Domain of unknown function DUF108 AYP_000940 PF03447 Homoserine dehydrogenase, NAD binding domain AYP_000941 PF00171 Aldehyde dehydrogenase family AYP_000942 PF00205 Thiamine pyrophosphate enzyme, central domain AYP_000942 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYP_000942 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYP_000944 PF07690 Major Facilitator Superfamily AYP_000946 PF01327 Polypeptide deformylase AYP_000947 PF04960 Glutaminase AYP_000948 PF12833 Helix-turn-helix domain AYP_000948 PF02311 AraC-like ligand binding domain AYP_000949 PF07690 Major Facilitator Superfamily AYP_000950 PF01263 Aldose 1-epimerase AYP_000952 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000952 PF03466 LysR substrate binding domain AYP_000954 PF07690 Major Facilitator Superfamily AYP_000955 PF00456 Transketolase, thiamine diphosphate binding domain AYP_000956 PF02780 Transketolase, C-terminal domain AYP_000956 PF02779 Transketolase, pyrimidine binding domain AYP_000957 PF02574 Homocysteine S-methyltransferase AYP_000957 PF00809 Pterin binding enzyme AYP_000957 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYP_000957 PF02607 B12 binding domain AYP_000957 PF02310 B12 binding domain AYP_000959 PF01384 Phosphate transporter family AYP_000960 PF00291 Pyridoxal-phosphate dependent enzyme AYP_000964 PF03781 Sulfatase-modifying factor enzyme 1 AYP_000965 PF00884 Sulfatase AYP_000967 PF01521 Iron-sulphur cluster biosynthesis AYP_000967 PF01106 NifU-like domain AYP_000968 PF07715 TonB-dependent Receptor Plug Domain AYP_000968 PF00593 TonB dependent receptor AYP_000970 PF00561 alpha/beta hydrolase fold AYP_000971 PF00484 Carbonic anhydrase AYP_000972 PF13472 GDSL-like Lipase/Acylhydrolase family AYP_000973 PF00005 ABC transporter AYP_000975 PF01694 Rhomboid family AYP_000976 PF00912 Transglycosylase AYP_000977 PF13089 Polyphosphate kinase N-terminal domain AYP_000977 PF17941 Polyphosphate kinase C-terminal domain 1 AYP_000977 PF02503 Polyphosphate kinase middle domain AYP_000977 PF13090 Polyphosphate kinase C-terminal domain 2 AYP_000979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000979 PF03466 LysR substrate binding domain AYP_000980 PF00561 alpha/beta hydrolase fold AYP_000981 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_000981 PF18113 Rubredoxin binding C-terminal domain AYP_000982 PF00301 Rubredoxin AYP_000985 PF00152 tRNA synthetases class II (D, K and N) AYP_000985 PF01336 OB-fold nucleic acid binding domain AYP_000986 PF14052 Capsule assembly protein Wzi AYP_000988 PF01507 Phosphoadenosine phosphosulfate reductase family AYP_000989 PF00009 Elongation factor Tu GTP binding domain AYP_000992 PF03600 Citrate transporter AYP_000993 PF01595 Cyclin M transmembrane N-terminal domain AYP_000993 PF00571 CBS domain AYP_000993 PF03471 Transporter associated domain AYP_000994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_000994 PF03466 LysR substrate binding domain AYP_000995 PF00463 Isocitrate lyase family AYP_000999 PF01774 UreD urease accessory protein AYP_001000 PF00547 Urease, gamma subunit AYP_001001 PF00699 Urease beta subunit AYP_001002 PF01979 Amidohydrolase family AYP_001002 PF00449 Urease alpha-subunit, N-terminal domain AYP_001003 PF01979 Amidohydrolase family AYP_001003 PF00449 Urease alpha-subunit, N-terminal domain AYP_001004 PF02814 UreE urease accessory protein, N-terminal domain AYP_001004 PF05194 UreE urease accessory protein, C-terminal domain AYP_001005 PF01730 UreF AYP_001006 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYP_001009 PF00905 Penicillin binding protein transpeptidase domain AYP_001009 PF03717 Penicillin-binding Protein dimerisation domain AYP_001012 PF05191 Adenylate kinase, active site lid AYP_001013 PF10576 Iron-sulfur binding domain of endonuclease III AYP_001013 PF00730 HhH-GPD superfamily base excision DNA repair protein AYP_001013 PF00633 Helix-hairpin-helix motif AYP_001014 PF04060 Putative Fe-S cluster AYP_001015 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYP_001015 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYP_001017 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AYP_001018 PF02590 Predicted SPOUT methyltransferase AYP_001021 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYP_001021 PF05362 Lon protease (S16) C-terminal proteolytic domain AYP_001021 PF00004 ATPase family associated with various cellular activities (AAA) AYP_001022 PF05658 Head domain of trimeric autotransporter adhesin AYP_001022 PF05662 Coiled stalk of trimeric autotransporter adhesin AYP_001022 PF13018 Extended Signal Peptide of Type V secretion system AYP_001022 PF03895 YadA-like membrane anchor domain AYP_001024 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYP_001088 PF01551 Peptidase family M23 AYP_001088 PF01476 LysM domain AYP_001088 PF08525 Opacity-associated protein A N-terminal motif AYP_001097 PF00884 Sulfatase AYP_001097 PF08019 Phosphoethanolamine transferase EptA/EptB AYP_001103 PF00557 Metallopeptidase family M24 AYP_001103 PF05195 Aminopeptidase P, N-terminal domain AYP_001104 PF01494 FAD binding domain AYP_001105 PF01494 FAD binding domain AYP_001108 PF13411 MerR HTH family regulatory protein AYP_001111 PF01810 LysE type translocator AYP_001112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001112 PF03466 LysR substrate binding domain AYP_001114 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYP_001115 PF02021 Uncharacterised protein family UPF0102 AYP_001116 PF04972 BON domain AYP_001118 PF09297 NADH pyrophosphatase zinc ribbon domain AYP_001118 PF00293 NUDIX domain AYP_001120 PF00929 Exonuclease AYP_001121 PF01476 LysM domain AYP_001121 PF01464 Transglycosylase SLT domain AYP_001121 PF01464 Transglycosylase SLT domain AYP_001121 PF01476 LysM domain AYP_001122 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYP_001123 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001124 PF12911 N-terminal TM domain of oligopeptide transport permease C AYP_001124 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYP_001125 PF00005 ABC transporter AYP_001126 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_001126 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001127 PF07715 TonB-dependent Receptor Plug Domain AYP_001127 PF00593 TonB dependent receptor AYP_001129 PF00929 Exonuclease AYP_001130 PF01979 Amidohydrolase family AYP_001131 PF00360 Phytochrome region AYP_001131 PF01590 GAF domain AYP_001131 PF00990 Diguanylate cyclase, GGDEF domain AYP_001131 PF00563 EAL domain AYP_001132 PF00764 Arginosuccinate synthase AYP_001133 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_001133 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001136 PF05987 Bacterial protein of unknown function (DUF898) AYP_001137 PF03180 NLPA lipoprotein AYP_001141 PF04717 Type VI secretion system, phage-baseplate injector AYP_001141 PF16671 Actin cross-linking domain AYP_001142 PF13610 DDE domain AYP_001143 PF13610 DDE domain AYP_001145 PF00403 Heavy-metal-associated domain AYP_001145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_001145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001149 PF01695 IstB-like ATP binding protein AYP_001151 PF00809 Pterin binding enzyme AYP_001152 PF13427 Domain of unknown function (DUF4111) AYP_001152 PF01909 Nucleotidyltransferase domain AYP_001153 PF13610 DDE domain AYP_001154 PF00589 Phage integrase family AYP_001154 PF13495 Phage integrase, N-terminal SAM-like domain AYP_001155 PF00583 Acetyltransferase (GNAT) family AYP_001156 PF13610 DDE domain AYP_001157 PF13700 Domain of unknown function (DUF4158) AYP_001157 PF01526 Tn3 transposase DDE domain AYP_001158 PF00239 Resolvase, N terminal domain AYP_001158 PF02796 Helix-turn-helix domain of resolvase AYP_001160 PF13610 DDE domain AYP_001161 PF13700 Domain of unknown function (DUF4158) AYP_001161 PF01526 Tn3 transposase DDE domain AYP_001162 PF00239 Resolvase, N terminal domain AYP_001162 PF02796 Helix-turn-helix domain of resolvase AYP_001164 PF01636 Phosphotransferase enzyme family AYP_001165 PF13610 DDE domain AYP_001166 PF00563 EAL domain AYP_001166 PF11809 Domain of unknown function (DUF3330) AYP_001167 PF13495 Phage integrase, N-terminal SAM-like domain AYP_001167 PF00589 Phage integrase family AYP_001168 PF00583 Acetyltransferase (GNAT) family AYP_001171 PF13427 Domain of unknown function (DUF4111) AYP_001171 PF01909 Nucleotidyltransferase domain AYP_001172 PF00809 Pterin binding enzyme AYP_001175 PF13610 DDE domain AYP_001178 PF02796 Helix-turn-helix domain of resolvase AYP_001178 PF00239 Resolvase, N terminal domain AYP_001180 PF13610 DDE domain AYP_001181 PF00743 Flavin-binding monooxygenase-like AYP_001182 PF00106 short chain dehydrogenase AYP_001184 PF00440 Bacterial regulatory proteins, tetR family AYP_001184 PF17932 Tetracyclin repressor-like, C-terminal domain AYP_001185 PF17954 Quercetinase C-terminal cupin domain AYP_001185 PF02678 Pirin AYP_001187 PF00106 short chain dehydrogenase AYP_001188 PF00743 Flavin-binding monooxygenase-like AYP_001190 PF00860 Permease family AYP_001191 PF00962 Adenosine/AMP deaminase AYP_001192 PF01292 Prokaryotic cytochrome b561 AYP_001194 PF01351 Ribonuclease HII AYP_001195 PF02599 Global regulator protein family AYP_001196 PF13840 ACT domain AYP_001196 PF00696 Amino acid kinase family AYP_001196 PF01842 ACT domain AYP_001197 PF02272 DHHA1 domain AYP_001197 PF01411 tRNA synthetases class II (A) AYP_001197 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYP_001198 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYP_001198 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYP_001199 PF13393 Histidyl-tRNA synthetase AYP_001200 PF00709 Adenylosuccinate synthetase AYP_001203 PF00248 Aldo/keto reductase family AYP_001206 PF13545 Crp-like helix-turn-helix domain AYP_001206 PF00027 Cyclic nucleotide-binding domain AYP_001207 PF02566 OsmC-like protein AYP_001210 PF07724 AAA domain (Cdc48 subfamily) AYP_001210 PF02861 Clp amino terminal domain, pathogenicity island component AYP_001210 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_001210 PF00004 ATPase family associated with various cellular activities (AAA) AYP_001210 PF17871 AAA lid domain AYP_001213 PF10672 S-adenosylmethionine-dependent methyltransferase AYP_001213 PF02926 THUMP domain AYP_001213 PF01170 Putative RNA methylase family UPF0020 AYP_001215 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYP_001215 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYP_001216 PF01979 Amidohydrolase family AYP_001217 PF00691 OmpA family AYP_001217 PF13488 Glycine zipper AYP_001219 PF00043 Glutathione S-transferase, C-terminal domain AYP_001219 PF13417 Glutathione S-transferase, N-terminal domain AYP_001220 PF02390 Putative methyltransferase AYP_001222 PF00043 Glutathione S-transferase, C-terminal domain AYP_001222 PF02798 Glutathione S-transferase, N-terminal domain AYP_001224 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001224 PF13192 Thioredoxin domain AYP_001228 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYP_001228 PF00578 AhpC/TSA family AYP_001229 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYP_001229 PF00271 Helicase conserved C-terminal domain AYP_001229 PF04408 Helicase associated domain (HA2) AYP_001229 PF11898 Domain of unknown function (DUF3418) AYP_001229 PF00270 DEAD/DEAH box helicase AYP_001230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYP_001230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYP_001232 PF07690 Major Facilitator Superfamily AYP_001233 PF03594 Benzoate membrane transport protein AYP_001234 PF00106 short chain dehydrogenase AYP_001235 PF00970 Oxidoreductase FAD-binding domain AYP_001235 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_001235 PF00175 Oxidoreductase NAD-binding domain AYP_001236 PF00866 Ring hydroxylating beta subunit AYP_001237 PF00355 Rieske [2Fe-2S] domain AYP_001237 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_001238 PF03466 LysR substrate binding domain AYP_001238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001240 PF00403 Heavy-metal-associated domain AYP_001241 PF00376 MerR family regulatory protein AYP_001241 PF09278 MerR, DNA binding AYP_001248 PF13742 OB-fold nucleic acid binding domain AYP_001248 PF02601 Exonuclease VII, large subunit AYP_001253 PF01810 LysE type translocator AYP_001254 PF00313 'Cold-shock' DNA-binding domain AYP_001256 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYP_001256 PF03807 NADP oxidoreductase coenzyme F420-dependent AYP_001261 PF07690 Major Facilitator Superfamily AYP_001262 PF01638 HxlR-like helix-turn-helix AYP_001279 PF01381 Helix-turn-helix AYP_001309 PF00589 Phage integrase family AYP_001311 PF09190 DALR domain AYP_001311 PF01406 tRNA synthetases class I (C) catalytic domain AYP_001312 PF01380 SIS domain AYP_001312 PF00571 CBS domain AYP_001315 PF03968 OstA-like protein AYP_001316 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYP_001316 PF00005 ABC transporter AYP_001317 PF02321 Outer membrane efflux protein AYP_001318 PF00664 ABC transporter transmembrane region AYP_001318 PF03412 Peptidase C39 family AYP_001318 PF00005 ABC transporter AYP_001320 PF01205 Uncharacterized protein family UPF0029 AYP_001321 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_001323 PF01596 O-methyltransferase AYP_001325 PF00037 4Fe-4S binding domain AYP_001325 PF11953 Domain of unknown function (DUF3470) AYP_001327 PF05188 MutS domain II AYP_001327 PF00488 MutS domain V AYP_001327 PF01624 MutS domain I AYP_001327 PF05192 MutS domain III AYP_001327 PF05190 MutS family domain IV AYP_001329 PF01037 Lrp/AsnC ligand binding domain AYP_001331 PF00892 EamA-like transporter family AYP_001332 PF03707 Bacterial signalling protein N terminal repeat AYP_001332 PF00563 EAL domain AYP_001332 PF00990 Diguanylate cyclase, GGDEF domain AYP_001333 PF03279 Bacterial lipid A biosynthesis acyltransferase AYP_001335 PF07690 Major Facilitator Superfamily AYP_001339 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_001339 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_001342 PF13419 Haloacid dehalogenase-like hydrolase AYP_001344 PF16671 Actin cross-linking domain AYP_001344 PF04717 Type VI secretion system, phage-baseplate injector AYP_001345 PF14220 Domain of unknown function (DUF4329) AYP_001345 PF03527 RHS protein AYP_001345 PF05593 RHS Repeat AYP_001348 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001348 PF03466 LysR substrate binding domain AYP_001349 PF01566 Natural resistance-associated macrophage protein AYP_001350 PF03746 LamB/YcsF family AYP_001351 PF07286 Protein of unknown function (DUF1445) AYP_001353 PF00289 Biotin carboxylase, N-terminal domain AYP_001353 PF00364 Biotin-requiring enzyme AYP_001353 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_001353 PF02785 Biotin carboxylase C-terminal domain AYP_001354 PF00654 Voltage gated chloride channel AYP_001357 PF00440 Bacterial regulatory proteins, tetR family AYP_001359 PF08240 Alcohol dehydrogenase GroES-like domain AYP_001359 PF13823 Alcohol dehydrogenase GroES-associated AYP_001359 PF00107 Zinc-binding dehydrogenase AYP_001362 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_001362 PF02785 Biotin carboxylase C-terminal domain AYP_001362 PF00289 Biotin carboxylase, N-terminal domain AYP_001363 PF02525 Flavodoxin-like fold AYP_001364 PF01638 HxlR-like helix-turn-helix AYP_001368 PF08753 NikR C terminal nickel binding domain AYP_001368 PF01402 Ribbon-helix-helix protein, copG family AYP_001369 PF01425 Amidase AYP_001370 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_001371 PF00005 ABC transporter AYP_001384 PF01389 OmpA-like transmembrane domain AYP_001384 PF00691 OmpA family AYP_001386 PF00004 ATPase family associated with various cellular activities (AAA) AYP_001386 PF07724 AAA domain (Cdc48 subfamily) AYP_001386 PF17871 AAA lid domain AYP_001386 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_001392 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001392 PF03466 LysR substrate binding domain AYP_001394 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYP_001395 PF07690 Major Facilitator Superfamily AYP_001398 PF02677 Epoxyqueuosine reductase QueH AYP_001402 PF09278 MerR, DNA binding AYP_001402 PF00376 MerR family regulatory protein AYP_001404 PF00701 Dihydrodipicolinate synthetase family AYP_001406 PF00392 Bacterial regulatory proteins, gntR family AYP_001407 PF05544 Proline racemase AYP_001408 PF01266 FAD dependent oxidoreductase AYP_001410 PF04324 BFD-like [2Fe-2S] binding domain AYP_001410 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001412 PF00083 Sugar (and other) transporter AYP_001413 PF00171 Aldehyde dehydrogenase family AYP_001414 PF13520 Amino acid permease AYP_001415 PF03315 Serine dehydratase beta chain AYP_001415 PF03313 Serine dehydratase alpha chain AYP_001416 PF01575 MaoC like domain AYP_001416 PF00171 Aldehyde dehydrogenase family AYP_001417 PF05138 Phenylacetic acid catabolic protein AYP_001418 PF06243 Phenylacetic acid degradation B AYP_001419 PF05138 Phenylacetic acid catabolic protein AYP_001420 PF01883 Iron-sulfur cluster assembly protein AYP_001421 PF00175 Oxidoreductase NAD-binding domain AYP_001421 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_001421 PF00970 Oxidoreductase FAD-binding domain AYP_001422 PF00378 Enoyl-CoA hydratase/isomerase AYP_001423 PF00378 Enoyl-CoA hydratase/isomerase AYP_001424 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_001424 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_001424 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYP_001425 PF00108 Thiolase, N-terminal domain AYP_001425 PF02803 Thiolase, C-terminal domain AYP_001426 PF14535 AMP-binding enzyme C-terminal domain AYP_001426 PF00501 AMP-binding enzyme AYP_001427 PF07848 PaaX-like protein AYP_001427 PF08223 PaaX-like protein C-terminal domain AYP_001428 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_001429 PF03061 Thioesterase superfamily AYP_001436 PF00199 Catalase AYP_001437 PF01292 Prokaryotic cytochrome b561 AYP_001441 PF12697 Alpha/beta hydrolase family AYP_001442 PF01613 Flavin reductase like domain AYP_001443 PF00296 Luciferase-like monooxygenase AYP_001444 PF00171 Aldehyde dehydrogenase family AYP_001446 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYP_001448 PF00171 Aldehyde dehydrogenase family AYP_001449 PF02627 Carboxymuconolactone decarboxylase family AYP_001450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001450 PF03466 LysR substrate binding domain AYP_001451 PF02525 Flavodoxin-like fold AYP_001452 PF09339 IclR helix-turn-helix domain AYP_001452 PF01614 Bacterial transcriptional regulator AYP_001453 PF01494 FAD binding domain AYP_001454 PF00392 Bacterial regulatory proteins, gntR family AYP_001454 PF07702 UTRA domain AYP_001456 PF08402 TOBE domain AYP_001456 PF00005 ABC transporter AYP_001460 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001461 PF01266 FAD dependent oxidoreductase AYP_001462 PF00266 Aminotransferase class-V AYP_001463 PF13419 Haloacid dehalogenase-like hydrolase AYP_001464 PF07690 Major Facilitator Superfamily AYP_001465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_001465 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001466 PF02515 CoA-transferase family III AYP_001467 PF09339 IclR helix-turn-helix domain AYP_001468 PF00378 Enoyl-CoA hydratase/isomerase AYP_001469 PF03060 Nitronate monooxygenase AYP_001470 PF07690 Major Facilitator Superfamily AYP_001471 PF09339 IclR helix-turn-helix domain AYP_001472 PF02803 Thiolase, C-terminal domain AYP_001472 PF00108 Thiolase, N-terminal domain AYP_001473 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYP_001473 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_001473 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_001475 PF00378 Enoyl-CoA hydratase/isomerase AYP_001476 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_001476 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001476 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001477 PF07690 Major Facilitator Superfamily AYP_001478 PF01144 Coenzyme A transferase AYP_001479 PF01144 Coenzyme A transferase AYP_001481 PF07690 Major Facilitator Superfamily AYP_001483 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001483 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001483 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_001483 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_001486 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001486 PF03466 LysR substrate binding domain AYP_001487 PF00682 HMGL-like AYP_001488 PF00364 Biotin-requiring enzyme AYP_001488 PF00289 Biotin carboxylase, N-terminal domain AYP_001488 PF02785 Biotin carboxylase C-terminal domain AYP_001488 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_001489 PF00378 Enoyl-CoA hydratase/isomerase AYP_001490 PF01039 Carboxyl transferase domain AYP_001491 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_001491 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001491 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001492 PF00440 Bacterial regulatory proteins, tetR family AYP_001493 PF00501 AMP-binding enzyme AYP_001493 PF13193 AMP-binding enzyme C-terminal domain AYP_001497 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001497 PF03466 LysR substrate binding domain AYP_001504 PF00994 Probable molybdopterin binding domain AYP_001504 PF18146 Damage-inducible protein CinA KH domain AYP_001504 PF02464 Competence-damaged protein AYP_001506 PF00199 Catalase AYP_001506 PF18011 C-terminal domain found in long catalases AYP_001506 PF06628 Catalase-related immune-responsive AYP_001511 PF00717 Peptidase S24-like AYP_001513 PF01037 Lrp/AsnC ligand binding domain AYP_001513 PF13404 AsnC-type helix-turn-helix domain AYP_001516 PF00072 Response regulator receiver domain AYP_001516 PF09308 LuxQ, periplasmic AYP_001516 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_001516 PF00512 His Kinase A (phospho-acceptor) domain AYP_001517 PF00072 Response regulator receiver domain AYP_001519 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001520 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001521 PF00005 ABC transporter AYP_001522 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_001523 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_001525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001525 PF03466 LysR substrate binding domain AYP_001526 PF01810 LysE type translocator AYP_001527 PF00266 Aminotransferase class-V AYP_001529 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_001530 PF00581 Rhodanese-like domain AYP_001532 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001532 PF03466 LysR substrate binding domain AYP_001533 PF02798 Glutathione S-transferase, N-terminal domain AYP_001534 PF14834 Glutathione S-transferase, C-terminal domain AYP_001534 PF02798 Glutathione S-transferase, N-terminal domain AYP_001535 PF03466 LysR substrate binding domain AYP_001535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001536 PF03788 LrgA family AYP_001537 PF04172 LrgB-like family AYP_001538 PF00155 Aminotransferase class I and II AYP_001538 PF00392 Bacterial regulatory proteins, gntR family AYP_001541 PF07690 Major Facilitator Superfamily AYP_001543 PF16957 Malonate decarboxylase, alpha subunit, transporter AYP_001544 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AYP_001545 PF06857 Malonate decarboxylase delta subunit (MdcD) AYP_001546 PF01039 Carboxyl transferase domain AYP_001548 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AYP_001549 PF00698 Acyl transferase domain AYP_001552 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001552 PF03466 LysR substrate binding domain AYP_001553 PF00392 Bacterial regulatory proteins, gntR family AYP_001553 PF00155 Aminotransferase class I and II AYP_001555 PF02322 Cytochrome bd terminal oxidase subunit II AYP_001556 PF01654 Cytochrome bd terminal oxidase subunit I AYP_001559 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001559 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001559 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_001560 PF00296 Luciferase-like monooxygenase AYP_001561 PF00083 Sugar (and other) transporter AYP_001563 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYP_001564 PF00005 ABC transporter AYP_001565 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001566 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AYP_001567 PF01177 Asp/Glu/Hydantoin racemase AYP_001568 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYP_001570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001570 PF03466 LysR substrate binding domain AYP_001572 PF01979 Amidohydrolase family AYP_001572 PF13382 Adenine deaminase C-terminal domain AYP_001574 PF03960 ArsC family AYP_001575 PF01022 Bacterial regulatory protein, arsR family AYP_001576 PF01758 Sodium Bile acid symporter family AYP_001577 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001577 PF03466 LysR substrate binding domain AYP_001580 PF13192 Thioredoxin domain AYP_001580 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001584 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_001585 PF00588 SpoU rRNA Methylase family AYP_001586 PF01336 OB-fold nucleic acid binding domain AYP_001586 PF02811 PHP domain AYP_001586 PF14579 Helix-hairpin-helix motif AYP_001586 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYP_001586 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYP_001587 PF00710 Asparaginase, N-terminal AYP_001587 PF17763 Glutaminase/Asparaginase C-terminal domain AYP_001588 PF00375 Sodium:dicarboxylate symporter family AYP_001589 PF00155 Aminotransferase class I and II AYP_001590 PF01641 SelR domain AYP_001591 PF00255 Glutathione peroxidase AYP_001592 PF12852 Cupin AYP_001592 PF12833 Helix-turn-helix domain AYP_001594 PF00155 Aminotransferase class I and II AYP_001595 PF01909 Nucleotidyltransferase domain AYP_001595 PF08335 GlnD PII-uridylyltransferase AYP_001595 PF01966 HD domain AYP_001596 PF02222 ATP-grasp domain AYP_001598 PF05437 Branched-chain amino acid transport protein (AzlD) AYP_001599 PF03591 AzlC protein AYP_001604 PF06071 Protein of unknown function (DUF933) AYP_001604 PF01926 50S ribosome-binding GTPase AYP_001605 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001606 PF09383 NIL domain AYP_001606 PF00005 ABC transporter AYP_001607 PF03180 NLPA lipoprotein AYP_001608 PF03180 NLPA lipoprotein AYP_001609 PF00296 Luciferase-like monooxygenase AYP_001611 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001611 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_001614 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001615 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001616 PF00005 ABC transporter AYP_001618 PF01037 Lrp/AsnC ligand binding domain AYP_001619 PF01709 Transcriptional regulator AYP_001621 PF00440 Bacterial regulatory proteins, tetR family AYP_001626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001626 PF03466 LysR substrate binding domain AYP_001628 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYP_001630 PF00892 EamA-like transporter family AYP_001634 PF13953 PapC C-terminal domain AYP_001634 PF00577 Outer membrane usher protein AYP_001634 PF13954 PapC N-terminal domain AYP_001635 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYP_001635 PF02753 Pili assembly chaperone PapD, C-terminal domain AYP_001636 PF16970 Type-1 fimbrial protein, A AYP_001639 PF04055 Radical SAM superfamily AYP_001639 PF06968 Biotin and Thiamin Synthesis associated domain AYP_001640 PF08331 Domain of unknown function (DUF1730) AYP_001641 PF03853 YjeF-related protein N-terminus AYP_001641 PF01256 Carbohydrate kinase AYP_001642 PF02075 Crossover junction endodeoxyribonuclease RuvC AYP_001646 PF00905 Penicillin binding protein transpeptidase domain AYP_001650 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYP_001650 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYP_001650 PF02772 S-adenosylmethionine synthetase, central domain AYP_001651 PF00456 Transketolase, thiamine diphosphate binding domain AYP_001651 PF02779 Transketolase, pyrimidine binding domain AYP_001651 PF02780 Transketolase, C-terminal domain AYP_001653 PF04264 YceI-like domain AYP_001655 PF09992 Phosphodiester glycosidase AYP_001657 PF05958 tRNA (Uracil-5-)-methyltransferase AYP_001658 PF04229 GrpB protein AYP_001659 PF00171 Aldehyde dehydrogenase family AYP_001659 PF01619 Proline dehydrogenase AYP_001659 PF14850 DNA-binding domain of Proline dehydrogenase AYP_001659 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AYP_001661 PF01037 Lrp/AsnC ligand binding domain AYP_001662 PF00474 Sodium:solute symporter family AYP_001663 PF02146 Sir2 family AYP_001664 PF01597 Glycine cleavage H-protein AYP_001665 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYP_001665 PF12833 Helix-turn-helix domain AYP_001667 PF00005 ABC transporter AYP_001667 PF00664 ABC transporter transmembrane region AYP_001668 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AYP_001669 PF06912 Protein of unknown function (DUF1275) AYP_001670 PF00375 Sodium:dicarboxylate symporter family AYP_001673 PF08007 Cupin superfamily protein AYP_001674 PF02545 Maf-like protein AYP_001676 PF00162 Phosphoglycerate kinase AYP_001678 PF01116 Fructose-bisphosphate aldolase class-II AYP_001679 PF00639 PPIC-type PPIASE domain AYP_001679 PF09312 SurA N-terminal domain AYP_001680 PF04453 LPS transport system D AYP_001680 PF03968 OstA-like protein AYP_001681 PF01636 Phosphotransferase enzyme family AYP_001682 PF00483 Nucleotidyl transferase AYP_001683 PF02527 rRNA small subunit methyltransferase G AYP_001684 PF13614 AAA domain AYP_001685 PF02195 ParB-like nuclease domain AYP_001685 PF17762 HTH domain found in ParB protein AYP_001686 PF01618 MotA/TolQ/ExbB proton channel family AYP_001688 PF00005 ABC transporter AYP_001688 PF00664 ABC transporter transmembrane region AYP_001689 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYP_001690 PF02348 Cytidylyltransferase AYP_001691 PF09115 DNA polymerase III, delta subunit, C terminal AYP_001693 PF01026 TatD related DNase AYP_001696 PF02501 Type II secretion system (T2SS), protein I AYP_001696 PF07963 Prokaryotic N-terminal methylation motif AYP_001697 PF07963 Prokaryotic N-terminal methylation motif AYP_001697 PF11612 Type II secretion system (T2SS), protein J AYP_001698 PF03934 Type II secretion system (T2SS), protein K AYP_001700 PF03167 Uracil DNA glycosylase superfamily AYP_001702 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYP_001704 PF02224 Cytidylate kinase AYP_001705 PF00575 S1 RNA binding domain AYP_001706 PF00216 Bacterial DNA-binding protein AYP_001708 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYP_001710 PF00743 Flavin-binding monooxygenase-like AYP_001712 PF03969 AFG1-like ATPase AYP_001713 PF01274 Malate synthase AYP_001715 PF02472 Biopolymer transport protein ExbD/TolR AYP_001716 PF02472 Biopolymer transport protein ExbD/TolR AYP_001717 PF01618 MotA/TolQ/ExbB proton channel family AYP_001719 PF07715 TonB-dependent Receptor Plug Domain AYP_001719 PF00593 TonB dependent receptor AYP_001722 PF01432 Peptidase family M3 AYP_001723 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001724 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYP_001725 PF00005 ABC transporter AYP_001729 PF13276 HTH-like domain AYP_001729 PF13333 Integrase core domain AYP_001729 PF00665 Integrase core domain AYP_001730 PF00459 Inositol monophosphatase family AYP_001732 PF01649 Ribosomal protein S20 AYP_001733 PF13460 NAD(P)H-binding AYP_001734 PF03737 Aldolase/RraA AYP_001738 PF00270 DEAD/DEAH box helicase AYP_001738 PF00271 Helicase conserved C-terminal domain AYP_001738 PF03461 TRCF domain AYP_001738 PF17757 UvrB interaction domain AYP_001738 PF02559 CarD-like/TRCF domain AYP_001740 PF00211 Adenylate and Guanylate cyclase catalytic domain AYP_001741 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_001742 PF00012 Hsp70 protein AYP_001743 PF00226 DnaJ domain AYP_001743 PF07743 HSCB C-terminal oligomerisation domain AYP_001744 PF01521 Iron-sulphur cluster biosynthesis AYP_001745 PF01592 NifU-like N terminal domain AYP_001746 PF00266 Aminotransferase class-V AYP_001747 PF02082 Transcriptional regulator AYP_001750 PF00216 Bacterial DNA-binding protein AYP_001751 PF00639 PPIC-type PPIASE domain AYP_001751 PF09312 SurA N-terminal domain AYP_001752 PF12833 Helix-turn-helix domain AYP_001752 PF12852 Cupin AYP_001753 PF00487 Fatty acid desaturase AYP_001754 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_001754 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001754 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_001755 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_001755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_001756 PF03109 ABC1 family AYP_001758 PF04073 Aminoacyl-tRNA editing domain AYP_001759 PF06276 Ferric iron reductase FhuF-like transporter AYP_001759 PF04183 IucA / IucC family AYP_001760 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYP_001761 PF07690 Major Facilitator Superfamily AYP_001762 PF06276 Ferric iron reductase FhuF-like transporter AYP_001762 PF04183 IucA / IucC family AYP_001763 PF04183 IucA / IucC family AYP_001763 PF06276 Ferric iron reductase FhuF-like transporter AYP_001766 PF00593 TonB dependent receptor AYP_001766 PF07715 TonB-dependent Receptor Plug Domain AYP_001774 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AYP_001775 PF02277 Phosphoribosyltransferase AYP_001778 PF02654 Cobalamin-5-phosphate synthase AYP_001779 PF00793 DAHP synthetase I family AYP_001780 PF01925 Sulfite exporter TauE/SafE AYP_001784 PF00593 TonB dependent receptor AYP_001784 PF07715 TonB-dependent Receptor Plug Domain AYP_001785 PF02684 Lipid-A-disaccharide synthetase AYP_001787 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_001788 PF00005 ABC transporter AYP_001795 PF01230 HIT domain AYP_001802 PF08241 Methyltransferase domain AYP_001803 PF00561 alpha/beta hydrolase fold AYP_001804 PF01053 Cys/Met metabolism PLP-dependent enzyme AYP_001806 PF02575 YbaB/EbfC DNA-binding family AYP_001807 PF13662 Toprim domain AYP_001807 PF02132 RecR protein AYP_001808 PF01612 3'-5' exonuclease AYP_001808 PF00570 HRDC domain AYP_001814 PF05166 YcgL domain AYP_001816 PF01434 Peptidase family M41 AYP_001816 PF00004 ATPase family associated with various cellular activities (AAA) AYP_001816 PF17862 AAA+ lid domain AYP_001818 PF00291 Pyridoxal-phosphate dependent enzyme AYP_001819 PF05175 Methyltransferase small domain AYP_001820 PF01264 Chorismate synthase AYP_001821 PF08448 PAS fold AYP_001821 PF00990 Diguanylate cyclase, GGDEF domain AYP_001826 PF04055 Radical SAM superfamily AYP_001827 PF00676 Dehydrogenase E1 component AYP_001828 PF02780 Transketolase, C-terminal domain AYP_001828 PF02779 Transketolase, pyrimidine binding domain AYP_001829 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYP_001829 PF00364 Biotin-requiring enzyme AYP_001829 PF02817 e3 binding domain AYP_001830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_001830 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_001831 PF00106 short chain dehydrogenase AYP_001832 PF00107 Zinc-binding dehydrogenase AYP_001832 PF08240 Alcohol dehydrogenase GroES-like domain AYP_001833 PF01062 Bestrophin, RFP-TM, chloride channel AYP_001834 PF00158 Sigma-54 interaction domain AYP_001834 PF00072 Response regulator receiver domain AYP_001834 PF02954 Bacterial regulatory protein, Fis family AYP_001835 PF04273 Putative phosphatase (DUF442) AYP_001835 PF00753 Metallo-beta-lactamase superfamily AYP_001836 PF04273 Putative phosphatase (DUF442) AYP_001836 PF00753 Metallo-beta-lactamase superfamily AYP_001837 PF01925 Sulfite exporter TauE/SafE AYP_001840 PF06445 GyrI-like small molecule binding domain AYP_001840 PF12833 Helix-turn-helix domain AYP_001841 PF01638 HxlR-like helix-turn-helix AYP_001842 PF02525 Flavodoxin-like fold AYP_001847 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYP_001848 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001849 PF00005 ABC transporter AYP_001852 PF00083 Sugar (and other) transporter AYP_001853 PF00593 TonB dependent receptor AYP_001853 PF07715 TonB-dependent Receptor Plug Domain AYP_001854 PF10415 Fumarase C C-terminus AYP_001854 PF00206 Lyase AYP_001857 PF03466 LysR substrate binding domain AYP_001857 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001858 PF03466 LysR substrate binding domain AYP_001859 PF02803 Thiolase, C-terminal domain AYP_001859 PF00108 Thiolase, N-terminal domain AYP_001860 PF02667 Short chain fatty acid transporter AYP_001861 PF01144 Coenzyme A transferase AYP_001862 PF01144 Coenzyme A transferase AYP_001863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001863 PF03466 LysR substrate binding domain AYP_001869 PF12833 Helix-turn-helix domain AYP_001869 PF06719 AraC-type transcriptional regulator N-terminus AYP_001870 PF07690 Major Facilitator Superfamily AYP_001871 PF01738 Dienelactone hydrolase family AYP_001874 PF01613 Flavin reductase like domain AYP_001876 PF14525 AraC-binding-like domain AYP_001876 PF12833 Helix-turn-helix domain AYP_001877 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_001877 PF00175 Oxidoreductase NAD-binding domain AYP_001877 PF00970 Oxidoreductase FAD-binding domain AYP_001878 PF00866 Ring hydroxylating beta subunit AYP_001879 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_001879 PF00355 Rieske [2Fe-2S] domain AYP_001880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001880 PF03459 TOBE domain AYP_001882 PF00528 Binding-protein-dependent transport system inner membrane component AYP_001883 PF00005 ABC transporter AYP_001883 PF03459 TOBE domain AYP_001884 PF00106 short chain dehydrogenase AYP_001885 PF00857 Isochorismatase family AYP_001885 PF00550 Phosphopantetheine attachment site AYP_001887 PF00149 Calcineurin-like phosphoesterase AYP_001888 PF13089 Polyphosphate kinase N-terminal domain AYP_001888 PF02503 Polyphosphate kinase middle domain AYP_001888 PF17941 Polyphosphate kinase C-terminal domain 1 AYP_001888 PF13090 Polyphosphate kinase C-terminal domain 2 AYP_001889 PF12706 Beta-lactamase superfamily domain AYP_001890 PF03070 TENA/THI-4/PQQC family AYP_001891 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AYP_001892 PF13186 Iron-sulfur cluster-binding domain AYP_001892 PF04055 Radical SAM superfamily AYP_001893 PF01244 Membrane dipeptidase (Peptidase family M19) AYP_001897 PF13091 PLD-like domain AYP_001900 PF00199 Catalase AYP_001902 PF08240 Alcohol dehydrogenase GroES-like domain AYP_001902 PF00107 Zinc-binding dehydrogenase AYP_001904 PF00419 Fimbrial protein AYP_001905 PF00577 Outer membrane usher protein AYP_001905 PF13954 PapC N-terminal domain AYP_001905 PF13953 PapC C-terminal domain AYP_001906 PF02753 Pili assembly chaperone PapD, C-terminal domain AYP_001906 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYP_001909 PF16970 Type-1 fimbrial protein, A AYP_001912 PF01266 FAD dependent oxidoreductase AYP_001915 PF01593 Flavin containing amine oxidoreductase AYP_001916 PF00743 Flavin-binding monooxygenase-like AYP_001917 PF12146 Serine aminopeptidase, S33 AYP_001918 PF02321 Outer membrane efflux protein AYP_001919 PF00873 AcrB/AcrD/AcrF family AYP_001920 PF00529 HlyD membrane-fusion protein of T1SS AYP_001920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_001921 PF00072 Response regulator receiver domain AYP_001921 PF00486 Transcriptional regulatory protein, C terminal AYP_001922 PF00512 His Kinase A (phospho-acceptor) domain AYP_001922 PF00672 HAMP domain AYP_001922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_001922 PF16527 Two-component sensor protein CpxA, periplasmic domain AYP_001924 PF02311 AraC-like ligand binding domain AYP_001924 PF12833 Helix-turn-helix domain AYP_001925 PF12146 Serine aminopeptidase, S33 AYP_001937 PF04607 Region found in RelA / SpoT proteins AYP_001937 PF02824 TGS domain AYP_001937 PF13291 ACT domain AYP_001939 PF01975 Survival protein SurE AYP_001944 PF07690 Major Facilitator Superfamily AYP_001945 PF13533 Biotin-lipoyl like AYP_001946 PF01425 Amidase AYP_001947 PF00196 Bacterial regulatory proteins, luxR family AYP_001963 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYP_001964 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYP_001964 PF14572 Phosphoribosyl synthetase-associated domain AYP_001971 PF00005 ABC transporter AYP_001975 PF08240 Alcohol dehydrogenase GroES-like domain AYP_001975 PF00107 Zinc-binding dehydrogenase AYP_001978 PF12833 Helix-turn-helix domain AYP_001978 PF06719 AraC-type transcriptional regulator N-terminus AYP_001979 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_001979 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_001980 PF07690 Major Facilitator Superfamily AYP_001981 PF01370 NAD dependent epimerase/dehydratase family AYP_001982 PF03466 LysR substrate binding domain AYP_001982 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_001984 PF00920 Dehydratase family AYP_001985 PF00171 Aldehyde dehydrogenase family AYP_001988 PF00529 HlyD membrane-fusion protein of T1SS AYP_001988 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_001992 PF03737 Aldolase/RraA AYP_001993 PF01842 ACT domain AYP_001993 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_001993 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_001994 PF07690 Major Facilitator Superfamily AYP_001998 PF03466 LysR substrate binding domain AYP_001998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002000 PF08450 SMP-30/Gluconolactonase/LRE-like region AYP_002003 PF04909 Amidohydrolase AYP_002004 PF07690 Major Facilitator Superfamily AYP_002008 PF13332 Hemagglutinin repeat AYP_002008 PF05860 haemagglutination activity domain AYP_002008 PF04829 Pre-toxin domain with VENN motif AYP_002008 PF13018 Extended Signal Peptide of Type V secretion system AYP_002009 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AYP_002009 PF17287 POTRA domain AYP_002009 PF08479 POTRA domain, ShlB-type AYP_002012 PF07687 Peptidase dimerisation domain AYP_002012 PF01546 Peptidase family M20/M25/M40 AYP_002014 PF00999 Sodium/hydrogen exchanger family AYP_002014 PF02254 TrkA-N domain AYP_002015 PF07995 Glucose / Sorbosone dehydrogenase AYP_002016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002016 PF03466 LysR substrate binding domain AYP_002017 PF00857 Isochorismatase family AYP_002019 PF08359 YsiA-like protein, C-terminal region AYP_002019 PF00440 Bacterial regulatory proteins, tetR family AYP_002020 PF12706 Beta-lactamase superfamily domain AYP_002022 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002024 PF00376 MerR family regulatory protein AYP_002024 PF09278 MerR, DNA binding AYP_002025 PF01872 RibD C-terminal domain AYP_002026 PF00106 short chain dehydrogenase AYP_002027 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_002027 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002028 PF01047 MarR family AYP_002029 PF07859 alpha/beta hydrolase fold AYP_002033 PF06628 Catalase-related immune-responsive AYP_002033 PF00199 Catalase AYP_002034 PF00561 alpha/beta hydrolase fold AYP_002036 PF00171 Aldehyde dehydrogenase family AYP_002037 PF08240 Alcohol dehydrogenase GroES-like domain AYP_002037 PF00107 Zinc-binding dehydrogenase AYP_002038 PF00474 Sodium:solute symporter family AYP_002039 PF04341 Protein of unknown function, DUF485 AYP_002040 PF00501 AMP-binding enzyme AYP_002040 PF13193 AMP-binding enzyme C-terminal domain AYP_002041 PF06506 Propionate catabolism activator AYP_002041 PF02954 Bacterial regulatory protein, Fis family AYP_002041 PF00158 Sigma-54 interaction domain AYP_002043 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_002043 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_002043 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_002047 PF00171 Aldehyde dehydrogenase family AYP_002049 PF07690 Major Facilitator Superfamily AYP_002050 PF00920 Dehydratase family AYP_002051 PF00392 Bacterial regulatory proteins, gntR family AYP_002051 PF07729 FCD domain AYP_002053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002053 PF03466 LysR substrate binding domain AYP_002054 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYP_002054 PF13378 Enolase C-terminal domain-like AYP_002055 PF02426 Muconolactone delta-isomerase AYP_002056 PF00775 Dioxygenase AYP_002056 PF04444 Catechol dioxygenase N terminus AYP_002057 PF01144 Coenzyme A transferase AYP_002058 PF01144 Coenzyme A transferase AYP_002059 PF00108 Thiolase, N-terminal domain AYP_002059 PF02803 Thiolase, C-terminal domain AYP_002060 PF12146 Serine aminopeptidase, S33 AYP_002061 PF01804 Penicillin amidase AYP_002062 PF00171 Aldehyde dehydrogenase family AYP_002064 PF02727 Copper amine oxidase, N2 domain AYP_002064 PF07833 Copper amine oxidase N-terminal domain AYP_002064 PF01179 Copper amine oxidase, enzyme domain AYP_002064 PF02728 Copper amine oxidase, N3 domain AYP_002065 PF02311 AraC-like ligand binding domain AYP_002065 PF12833 Helix-turn-helix domain AYP_002066 PF01613 Flavin reductase like domain AYP_002067 PF00175 Oxidoreductase NAD-binding domain AYP_002067 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_002070 PF00355 Rieske [2Fe-2S] domain AYP_002070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_002073 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_002074 PF01425 Amidase AYP_002076 PF07690 Major Facilitator Superfamily AYP_002078 PF00106 short chain dehydrogenase AYP_002081 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_002081 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_002081 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_002082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002082 PF03466 LysR substrate binding domain AYP_002083 PF01614 Bacterial transcriptional regulator AYP_002083 PF09339 IclR helix-turn-helix domain AYP_002084 PF00753 Metallo-beta-lactamase superfamily AYP_002086 PF04143 Sulphur transport AYP_002088 PF01011 PQQ enzyme repeat AYP_002088 PF13360 PQQ-like domain AYP_002089 PF04966 Carbohydrate-selective porin, OprB family AYP_002090 PF05048 Periplasmic copper-binding protein (NosD) AYP_002091 PF01487 Type I 3-dehydroquinase AYP_002092 PF00775 Dioxygenase AYP_002093 PF00775 Dioxygenase AYP_002093 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AYP_002094 PF02627 Carboxymuconolactone decarboxylase family AYP_002095 PF07690 Major Facilitator Superfamily AYP_002096 PF00561 alpha/beta hydrolase fold AYP_002097 PF10397 Adenylosuccinate lyase C-terminus AYP_002097 PF00206 Lyase AYP_002098 PF00108 Thiolase, N-terminal domain AYP_002098 PF02803 Thiolase, C-terminal domain AYP_002099 PF01144 Coenzyme A transferase AYP_002100 PF01144 Coenzyme A transferase AYP_002101 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYP_002102 PF04977 Septum formation initiator AYP_002103 PF04239 Protein of unknown function (DUF421) AYP_002104 PF00113 Enolase, C-terminal TIM barrel domain AYP_002104 PF03952 Enolase, N-terminal domain AYP_002105 PF00793 DAHP synthetase I family AYP_002106 PF06418 CTP synthase N-terminus AYP_002106 PF00117 Glutamine amidotransferase class-I AYP_002112 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002112 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_002115 PF00793 DAHP synthetase I family AYP_002116 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AYP_002117 PF00004 ATPase family associated with various cellular activities (AAA) AYP_002117 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_002117 PF02861 Clp amino terminal domain, pathogenicity island component AYP_002117 PF17871 AAA lid domain AYP_002117 PF07724 AAA domain (Cdc48 subfamily) AYP_002118 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYP_002120 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYP_002120 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYP_002124 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYP_002125 PF00291 Pyridoxal-phosphate dependent enzyme AYP_002125 PF00585 C-terminal regulatory domain of Threonine dehydratase AYP_002126 PF02080 TrkA-C domain AYP_002126 PF02254 TrkA-N domain AYP_002127 PF02386 Cation transport protein AYP_002128 PF02253 Phospholipase A1 AYP_002129 PF05193 Peptidase M16 inactive domain AYP_002129 PF00675 Insulinase (Peptidase family M16) AYP_002129 PF08367 Peptidase M16C associated AYP_002130 PF00593 TonB dependent receptor AYP_002130 PF07715 TonB-dependent Receptor Plug Domain AYP_002131 PF00294 pfkB family carbohydrate kinase AYP_002133 PF07290 Protein of unknown function (DUF1449) AYP_002136 PF01654 Cytochrome bd terminal oxidase subunit I AYP_002137 PF02322 Cytochrome bd terminal oxidase subunit II AYP_002140 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AYP_002142 PF02881 SRP54-type protein, helical bundle domain AYP_002142 PF00448 SRP54-type protein, GTPase domain AYP_002147 PF00478 IMP dehydrogenase / GMP reductase domain AYP_002147 PF00571 CBS domain AYP_002148 PF00202 Aminotransferase class-III AYP_002149 PF00462 Glutaredoxin AYP_002151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002151 PF03466 LysR substrate binding domain AYP_002152 PF00557 Metallopeptidase family M24 AYP_002153 PF05525 Branched-chain amino acid transport protein AYP_002157 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AYP_002157 PF02896 PEP-utilising enzyme, TIM barrel domain AYP_002157 PF05524 PEP-utilising enzyme, N-terminal AYP_002157 PF00391 PEP-utilising enzyme, mobile domain AYP_002157 PF00381 PTS HPr component phosphorylation site AYP_002158 PF00294 pfkB family carbohydrate kinase AYP_002159 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AYP_002159 PF02378 Phosphotransferase system, EIIC AYP_002164 PF00563 EAL domain AYP_002164 PF03707 Bacterial signalling protein N terminal repeat AYP_002164 PF00990 Diguanylate cyclase, GGDEF domain AYP_002166 PF07995 Glucose / Sorbosone dehydrogenase AYP_002167 PF02586 SOS response associated peptidase (SRAP) AYP_002168 PF00916 Sulfate permease family AYP_002168 PF01740 STAS domain AYP_002169 PF00082 Subtilase family AYP_002169 PF05922 Peptidase inhibitor I9 AYP_002171 PF00324 Amino acid permease AYP_002172 PF00266 Aminotransferase class-V AYP_002173 PF01037 Lrp/AsnC ligand binding domain AYP_002178 PF13419 Haloacid dehalogenase-like hydrolase AYP_002179 PF01479 S4 domain AYP_002180 PF00154 recA bacterial DNA recombination protein AYP_002181 PF02631 RecX family AYP_002184 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYP_002184 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_002185 PF07977 FabA-like domain AYP_002186 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYP_002186 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_002188 PF01103 Surface antigen AYP_002188 PF07244 Surface antigen variable number repeat AYP_002189 PF02163 Peptidase family M50 AYP_002189 PF17820 PDZ domain AYP_002189 PF13180 PDZ domain AYP_002190 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYP_002190 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AYP_002190 PF13288 DXP reductoisomerase C-terminal domain AYP_002192 PF01255 Putative undecaprenyl diphosphate synthase AYP_002193 PF01765 Ribosome recycling factor AYP_002194 PF00696 Amino acid kinase family AYP_002195 PF00919 Uncharacterized protein family UPF0004 AYP_002195 PF04055 Radical SAM superfamily AYP_002195 PF18693 TRAM domain AYP_002197 PF00989 PAS fold AYP_002197 PF00512 His Kinase A (phospho-acceptor) domain AYP_002197 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_002198 PF02954 Bacterial regulatory protein, Fis family AYP_002198 PF00158 Sigma-54 interaction domain AYP_002198 PF00072 Response regulator receiver domain AYP_002201 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYP_002201 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYP_002203 PF02542 YgbB family AYP_002205 PF01266 FAD dependent oxidoreductase AYP_002209 PF00206 Lyase AYP_002209 PF10415 Fumarase C C-terminus AYP_002210 PF16363 GDP-mannose 4,6 dehydratase AYP_002211 PF02635 DsrE/DsrF-like family AYP_002215 PF00892 EamA-like transporter family AYP_002216 PF00392 Bacterial regulatory proteins, gntR family AYP_002216 PF00155 Aminotransferase class I and II AYP_002217 PF01638 HxlR-like helix-turn-helix AYP_002218 PF03453 MoeA N-terminal region (domain I and II) AYP_002218 PF03454 MoeA C-terminal region (domain IV) AYP_002218 PF00994 Probable molybdopterin binding domain AYP_002219 PF01967 MoaC family AYP_002219 PF00994 Probable molybdopterin binding domain AYP_002220 PF02391 MoaE protein AYP_002222 PF06463 Molybdenum Cofactor Synthesis C AYP_002222 PF04055 Radical SAM superfamily AYP_002223 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYP_002223 PF00384 Molybdopterin oxidoreductase AYP_002223 PF01568 Molydopterin dinucleotide binding domain AYP_002224 PF12804 MobA-like NTP transferase domain AYP_002225 PF00384 Molybdopterin oxidoreductase AYP_002225 PF01568 Molydopterin dinucleotide binding domain AYP_002225 PF04324 BFD-like [2Fe-2S] binding domain AYP_002225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYP_002226 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYP_002226 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYP_002226 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYP_002226 PF04324 BFD-like [2Fe-2S] binding domain AYP_002226 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002227 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002227 PF04324 BFD-like [2Fe-2S] binding domain AYP_002227 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYP_002227 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYP_002227 PF13806 Rieske-like [2Fe-2S] domain AYP_002227 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYP_002228 PF00486 Transcriptional regulatory protein, C terminal AYP_002228 PF00072 Response regulator receiver domain AYP_002229 PF00005 ABC transporter AYP_002230 PF00817 impB/mucB/samB family AYP_002230 PF13438 Domain of unknown function (DUF4113) AYP_002230 PF11799 impB/mucB/samB family C-terminal domain AYP_002231 PF01220 Dehydroquinase class II AYP_002232 PF00364 Biotin-requiring enzyme AYP_002233 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_002233 PF00289 Biotin carboxylase, N-terminal domain AYP_002233 PF02785 Biotin carboxylase C-terminal domain AYP_002235 PF12832 MFS_1 like family AYP_002237 PF13276 HTH-like domain AYP_002237 PF13333 Integrase core domain AYP_002237 PF00665 Integrase core domain AYP_002302 PF01645 Conserved region in glutamate synthase AYP_002305 PF01565 FAD binding domain AYP_002305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYP_002306 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYP_002308 PF00465 Iron-containing alcohol dehydrogenase AYP_002309 PF03061 Thioesterase superfamily AYP_002310 PF04185 Phosphoesterase family AYP_002310 PF05506 Domain of unknown function (DUF756) AYP_002312 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AYP_002312 PF12170 DNA polymerase III tau subunit V interacting with alpha AYP_002312 PF12169 DNA polymerase III subunits gamma and tau domain III AYP_002313 PF07690 Major Facilitator Superfamily AYP_002318 PF00108 Thiolase, N-terminal domain AYP_002318 PF02803 Thiolase, C-terminal domain AYP_002320 PF03466 LysR substrate binding domain AYP_002320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002322 PF01810 LysE type translocator AYP_002323 PF01037 Lrp/AsnC ligand binding domain AYP_002324 PF03594 Benzoate membrane transport protein AYP_002325 PF02308 MgtC family AYP_002326 PF00689 Cation transporting ATPase, C-terminus AYP_002326 PF00690 Cation transporter/ATPase, N-terminus AYP_002330 PF00582 Universal stress protein family AYP_002331 PF00005 ABC transporter AYP_002331 PF12848 ABC transporter AYP_002336 PF00593 TonB dependent receptor AYP_002336 PF07715 TonB-dependent Receptor Plug Domain AYP_002342 PF00924 Mechanosensitive ion channel AYP_002344 PF00593 TonB dependent receptor AYP_002344 PF07715 TonB-dependent Receptor Plug Domain AYP_002345 PF00440 Bacterial regulatory proteins, tetR family AYP_002347 PF01037 Lrp/AsnC ligand binding domain AYP_002348 PF01817 Chorismate mutase type II AYP_002350 PF00106 short chain dehydrogenase AYP_002352 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYP_002352 PF01433 Peptidase family M1 domain AYP_002352 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYP_002355 PF02110 Hydroxyethylthiazole kinase family AYP_002356 PF06445 GyrI-like small molecule binding domain AYP_002358 PF05970 PIF1-like helicase AYP_002358 PF14493 Helix-turn-helix domain AYP_002359 PF00465 Iron-containing alcohol dehydrogenase AYP_002362 PF00171 Aldehyde dehydrogenase family AYP_002363 PF13520 Amino acid permease AYP_002364 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYP_002365 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYP_002366 PF00117 Glutamine amidotransferase class-I AYP_002366 PF02540 NAD synthase AYP_002366 PF00958 GMP synthase C terminal domain AYP_002368 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYP_002368 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYP_002369 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYP_002370 PF00149 Calcineurin-like phosphoesterase AYP_002372 PF00881 Nitroreductase family AYP_002374 PF17209 Hfq protein AYP_002376 PF08676 MutL C terminal dimerisation domain AYP_002376 PF01119 DNA mismatch repair protein, C-terminal domain AYP_002377 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYP_002378 PF00849 RNA pseudouridylate synthase AYP_002378 PF01479 S4 domain AYP_002381 PF00849 RNA pseudouridylate synthase AYP_002381 PF01479 S4 domain AYP_002383 PF04284 Protein of unknown function (DUF441) AYP_002384 PF03466 LysR substrate binding domain AYP_002384 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002387 PF07690 Major Facilitator Superfamily AYP_002388 PF00520 Ion transport protein AYP_002388 PF00027 Cyclic nucleotide-binding domain AYP_002390 PF06434 Aconitate hydratase 2 N-terminus AYP_002390 PF11791 Aconitate B N-terminal domain AYP_002390 PF00330 Aconitase family (aconitate hydratase) AYP_002393 PF01103 Surface antigen AYP_002393 PF17243 POTRA domain TamA domain 1 AYP_002393 PF07244 Surface antigen variable number repeat AYP_002394 PF07690 Major Facilitator Superfamily AYP_002395 PF03232 Ubiquinone biosynthesis protein COQ7 AYP_002397 PF00120 Glutamine synthetase, catalytic domain AYP_002398 PF00486 Transcriptional regulatory protein, C terminal AYP_002398 PF00072 Response regulator receiver domain AYP_002399 PF02702 Osmosensitive K+ channel His kinase sensor domain AYP_002399 PF00512 His Kinase A (phospho-acceptor) domain AYP_002399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_002399 PF13493 Domain of unknown function (DUF4118) AYP_002400 PF02669 K+-transporting ATPase, c chain AYP_002402 PF03814 Potassium-transporting ATPase A subunit AYP_002405 PF03109 ABC1 family AYP_002406 PF00899 ThiF family AYP_002407 PF01613 Flavin reductase like domain AYP_002408 PF13193 AMP-binding enzyme C-terminal domain AYP_002408 PF00501 AMP-binding enzyme AYP_002409 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_002409 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_002409 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_002410 PF00106 short chain dehydrogenase AYP_002411 PF12833 Helix-turn-helix domain AYP_002412 PF09084 NMT1/THI5 like AYP_002413 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002414 PF17827 PrmC N-terminal domain AYP_002414 PF13847 Methyltransferase domain AYP_002415 PF03462 PCRF domain AYP_002415 PF00472 RF-1 domain AYP_002417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002417 PF03466 LysR substrate binding domain AYP_002420 PF00296 Luciferase-like monooxygenase AYP_002422 PF13994 PgaD-like protein AYP_002423 PF00535 Glycosyl transferase family 2 AYP_002424 PF14883 Hypothetical glycosyl hydrolase family 13 AYP_002424 PF01522 Polysaccharide deacetylase AYP_002426 PF03618 Kinase/pyrophosphorylase AYP_002427 PF00391 PEP-utilising enzyme, mobile domain AYP_002427 PF02896 PEP-utilising enzyme, TIM barrel domain AYP_002427 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYP_002429 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYP_002429 PF06481 COX Aromatic Rich Motif AYP_002430 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYP_002431 PF00510 Cytochrome c oxidase subunit III AYP_002432 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AYP_002433 PF01040 UbiA prenyltransferase family AYP_002434 PF01250 Ribosomal protein S6 AYP_002435 PF01084 Ribosomal protein S18 AYP_002436 PF03948 Ribosomal protein L9, C-terminal domain AYP_002436 PF01281 Ribosomal protein L9, N-terminal domain AYP_002437 PF03796 DnaB-like helicase C terminal domain AYP_002437 PF00772 DnaB-like helicase N terminal domain AYP_002438 PF01168 Alanine racemase, N-terminal domain AYP_002438 PF00842 Alanine racemase, C-terminal domain AYP_002440 PF01841 Transglutaminase-like superfamily AYP_002440 PF08379 Bacterial transglutaminase-like N-terminal region AYP_002442 PF14403 Circularly permuted ATP-grasp type 2 AYP_002445 PF01134 Glucose inhibited division protein A AYP_002445 PF13932 GidA associated domain AYP_002449 PF02954 Bacterial regulatory protein, Fis family AYP_002450 PF02142 MGS-like domain AYP_002450 PF01808 AICARFT/IMPCHase bienzyme AYP_002451 PF02843 Phosphoribosylglycinamide synthetase, C domain AYP_002451 PF02844 Phosphoribosylglycinamide synthetase, N domain AYP_002451 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYP_002452 PF03180 NLPA lipoprotein AYP_002453 PF09383 NIL domain AYP_002453 PF00005 ABC transporter AYP_002454 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002455 PF00753 Metallo-beta-lactamase superfamily AYP_002455 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYP_002457 PF00375 Sodium:dicarboxylate symporter family AYP_002461 PF07995 Glucose / Sorbosone dehydrogenase AYP_002462 PF00892 EamA-like transporter family AYP_002463 PF01177 Asp/Glu/Hydantoin racemase AYP_002465 PF02470 MlaD protein AYP_002466 PF04403 Paraquat-inducible protein A AYP_002468 PF02080 TrkA-C domain AYP_002468 PF06826 Predicted Permease Membrane Region AYP_002469 PF00155 Aminotransferase class I and II AYP_002472 PF00083 Sugar (and other) transporter AYP_002472 PF08946 Osmosensory transporter coiled coil AYP_002482 PF07729 FCD domain AYP_002482 PF00392 Bacterial regulatory proteins, gntR family AYP_002484 PF03616 Sodium/glutamate symporter AYP_002485 PF00561 alpha/beta hydrolase fold AYP_002492 PF04076 Bacterial OB fold (BOF) protein AYP_002498 PF00324 Amino acid permease AYP_002499 PF00171 Aldehyde dehydrogenase family AYP_002500 PF00202 Aminotransferase class-III AYP_002501 PF03466 LysR substrate binding domain AYP_002501 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002504 PF00069 Protein kinase domain AYP_002508 PF00814 Glycoprotease family AYP_002509 PF01165 Ribosomal protein S21 AYP_002510 PF09424 Yqey-like protein AYP_002511 PF01435 Peptidase family M48 AYP_002512 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_002512 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_002515 PF00156 Phosphoribosyl transferase domain AYP_002517 PF01180 Dihydroorotate dehydrogenase AYP_002521 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYP_002521 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYP_002522 PF00881 Nitroreductase family AYP_002524 PF00270 DEAD/DEAH box helicase AYP_002524 PF00271 Helicase conserved C-terminal domain AYP_002525 PF00313 'Cold-shock' DNA-binding domain AYP_002527 PF04542 Sigma-70 region 2 AYP_002527 PF04545 Sigma-70, region 4 AYP_002527 PF00140 Sigma-70 factor, region 1.2 AYP_002528 PF04241 Protein of unknown function (DUF423) AYP_002530 PF05690 Thiazole biosynthesis protein ThiG AYP_002532 PF03883 Peroxide stress protein YaaA AYP_002534 PF12706 Beta-lactamase superfamily domain AYP_002535 PF01546 Peptidase family M20/M25/M40 AYP_002535 PF07687 Peptidase dimerisation domain AYP_002537 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYP_002538 PF01817 Chorismate mutase type II AYP_002538 PF00800 Prephenate dehydratase AYP_002538 PF01842 ACT domain AYP_002539 PF00756 Putative esterase AYP_002540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_002540 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_002540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_002541 PF00375 Sodium:dicarboxylate symporter family AYP_002542 PF02885 Glycosyl transferase family, helical bundle domain AYP_002542 PF00591 Glycosyl transferase family, a/b domain AYP_002543 PF07023 Protein of unknown function (DUF1315) AYP_002544 PF01513 ATP-NAD kinase AYP_002545 PF00912 Transglycosylase AYP_002545 PF00905 Penicillin binding protein transpeptidase domain AYP_002545 PF14814 Bifunctional transglycosylase second domain AYP_002547 PF00293 NUDIX domain AYP_002549 PF00512 His Kinase A (phospho-acceptor) domain AYP_002549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_002549 PF08521 Two-component sensor kinase N-terminal AYP_002550 PF00486 Transcriptional regulatory protein, C terminal AYP_002550 PF00072 Response regulator receiver domain AYP_002552 PF00437 Type II/IV secretion system protein AYP_002554 PF01980 tRNA-methyltransferase O AYP_002554 PF18389 TrmO C-terminal domain AYP_002555 PF00970 Oxidoreductase FAD-binding domain AYP_002555 PF00175 Oxidoreductase NAD-binding domain AYP_002556 PF02567 Phenazine biosynthesis-like protein AYP_002557 PF00392 Bacterial regulatory proteins, gntR family AYP_002557 PF00155 Aminotransferase class I and II AYP_002559 PF00037 4Fe-4S binding domain AYP_002560 PF00893 Small Multidrug Resistance protein AYP_002561 PF00005 ABC transporter AYP_002562 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002563 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002564 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_002565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002565 PF03466 LysR substrate binding domain AYP_002566 PF13533 Biotin-lipoyl like AYP_002567 PF00873 AcrB/AcrD/AcrF family AYP_002568 PF02321 Outer membrane efflux protein AYP_002569 PF00464 Serine hydroxymethyltransferase AYP_002575 PF00005 ABC transporter AYP_002576 PF01061 ABC-2 type transporter AYP_002577 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AYP_002577 PF14489 QueF-like protein AYP_002579 PF01098 Cell cycle protein AYP_002580 PF13406 Transglycosylase SLT domain AYP_002581 PF05036 Sporulation related domain AYP_002581 PF03330 Lytic transglycolase AYP_002585 PF12833 Helix-turn-helix domain AYP_002587 PF00889 Elongation factor TS AYP_002588 PF00318 Ribosomal protein S2 AYP_002589 PF00557 Metallopeptidase family M24 AYP_002591 PF07690 Major Facilitator Superfamily AYP_002594 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002594 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_002595 PF04055 Radical SAM superfamily AYP_002596 PF09317 Domain of unknown function (DUF1974) AYP_002596 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_002596 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_002599 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYP_002599 PF05221 S-adenosyl-L-homocysteine hydrolase AYP_002600 PF02219 Methylenetetrahydrofolate reductase AYP_002601 PF04452 RNA methyltransferase AYP_002602 PF03707 Bacterial signalling protein N terminal repeat AYP_002602 PF00990 Diguanylate cyclase, GGDEF domain AYP_002602 PF00563 EAL domain AYP_002603 PF03949 Malic enzyme, NAD binding domain AYP_002603 PF00390 Malic enzyme, N-terminal domain AYP_002603 PF01515 Phosphate acetyl/butaryl transferase AYP_002604 PF12627 Probable RNA and SrmB- binding site of polymerase A AYP_002604 PF01743 Poly A polymerase head domain AYP_002605 PF13180 PDZ domain AYP_002606 PF01784 NIF3 (NGG1p interacting factor 3) AYP_002607 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYP_002607 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYP_002614 PF01040 UbiA prenyltransferase family AYP_002615 PF04345 Chorismate lyase AYP_002617 PF00854 POT family AYP_002619 PF00117 Glutamine amidotransferase class-I AYP_002623 PF01433 Peptidase family M1 domain AYP_002623 PF11838 ERAP1-like C-terminal domain AYP_002624 PF07715 TonB-dependent Receptor Plug Domain AYP_002624 PF00593 TonB dependent receptor AYP_002625 PF00591 Glycosyl transferase family, a/b domain AYP_002625 PF02885 Glycosyl transferase family, helical bundle domain AYP_002626 PF00218 Indole-3-glycerol phosphate synthase AYP_002632 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYP_002632 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYP_002633 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_002633 PF01799 [2Fe-2S] binding domain AYP_002637 PF00144 Beta-lactamase AYP_002640 PF05675 Protein of unknown function (DUF817) AYP_002641 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYP_002643 PF00425 chorismate binding enzyme AYP_002645 PF00975 Thioesterase domain AYP_002646 PF00005 ABC transporter AYP_002646 PF00664 ABC transporter transmembrane region AYP_002647 PF00005 ABC transporter AYP_002647 PF00664 ABC transporter transmembrane region AYP_002649 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYP_002650 PF00857 Isochorismatase family AYP_002650 PF00550 Phosphopantetheine attachment site AYP_002651 PF13193 AMP-binding enzyme C-terminal domain AYP_002651 PF00501 AMP-binding enzyme AYP_002652 PF00501 AMP-binding enzyme AYP_002652 PF00550 Phosphopantetheine attachment site AYP_002652 PF00668 Condensation domain AYP_002653 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYP_002654 PF07715 TonB-dependent Receptor Plug Domain AYP_002654 PF00593 TonB dependent receptor AYP_002655 PF01497 Periplasmic binding protein AYP_002656 PF00005 ABC transporter AYP_002657 PF01032 FecCD transport family AYP_002658 PF01032 FecCD transport family AYP_002659 PF00975 Thioesterase domain AYP_002659 PF13193 AMP-binding enzyme C-terminal domain AYP_002659 PF00668 Condensation domain AYP_002659 PF00550 Phosphopantetheine attachment site AYP_002659 PF00501 AMP-binding enzyme AYP_002660 PF13193 AMP-binding enzyme C-terminal domain AYP_002660 PF00550 Phosphopantetheine attachment site AYP_002660 PF00501 AMP-binding enzyme AYP_002660 PF00668 Condensation domain AYP_002662 PF13309 HTH domain AYP_002662 PF08348 YheO-like PAS domain AYP_002663 PF00291 Pyridoxal-phosphate dependent enzyme AYP_002664 PF00291 Pyridoxal-phosphate dependent enzyme AYP_002665 PF02678 Pirin AYP_002665 PF17954 Quercetinase C-terminal cupin domain AYP_002669 PF00440 Bacterial regulatory proteins, tetR family AYP_002670 PF08659 KR domain AYP_002670 PF00698 Acyl transferase domain AYP_002670 PF08240 Alcohol dehydrogenase GroES-like domain AYP_002670 PF14765 Polyketide synthase dehydratase AYP_002670 PF00550 Phosphopantetheine attachment site AYP_002670 PF09277 Erythronolide synthase, docking AYP_002670 PF08990 Erythronolide synthase docking AYP_002670 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_002670 PF16197 Ketoacyl-synthetase C-terminal extension AYP_002670 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_002671 PF13378 Enolase C-terminal domain-like AYP_002671 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYP_002672 PF00083 Sugar (and other) transporter AYP_002673 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYP_002675 PF00892 EamA-like transporter family AYP_002679 PF01266 FAD dependent oxidoreductase AYP_002679 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYP_002680 PF18113 Rubredoxin binding C-terminal domain AYP_002680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002682 PF00355 Rieske [2Fe-2S] domain AYP_002682 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_002683 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_002684 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_002685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002685 PF03466 LysR substrate binding domain AYP_002686 PF00324 Amino acid permease AYP_002687 PF00171 Aldehyde dehydrogenase family AYP_002690 PF13556 PucR C-terminal helix-turn-helix domain AYP_002690 PF06018 CodY GAF-like domain AYP_002690 PF17853 GGDEF-like domain AYP_002696 PF04328 Selenoprotein, putative AYP_002697 PF02554 Carbon starvation protein CstA AYP_002697 PF13722 5TM C-terminal transporter carbon starvation CstA AYP_002698 PF01132 Elongation factor P (EF-P) OB domain AYP_002698 PF08207 Elongation factor P (EF-P) KOW-like domain AYP_002698 PF09285 Elongation factor P, C-terminal AYP_002699 PF04055 Radical SAM superfamily AYP_002702 PF01197 Ribosomal protein L31 AYP_002703 PF13593 SBF-like CPA transporter family (DUF4137) AYP_002704 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_002705 PF07690 Major Facilitator Superfamily AYP_002706 PF05362 Lon protease (S16) C-terminal proteolytic domain AYP_002706 PF13654 AAA domain AYP_002707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002707 PF03466 LysR substrate binding domain AYP_002708 PF01476 LysM domain AYP_002708 PF01551 Peptidase family M23 AYP_002709 PF01975 Survival protein SurE AYP_002712 PF07943 Penicillin-binding protein 5, C-terminal domain AYP_002712 PF00768 D-alanyl-D-alanine carboxypeptidase AYP_002713 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_002714 PF13344 Haloacid dehalogenase-like hydrolase AYP_002714 PF00293 NUDIX domain AYP_002716 PF04356 Protein of unknown function (DUF489) AYP_002717 PF08328 Adenylosuccinate lyase C-terminal AYP_002717 PF00206 Lyase AYP_002720 PF01343 Peptidase family S49 AYP_002720 PF08496 Peptidase family S49 N-terminal AYP_002721 PF00005 ABC transporter AYP_002722 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002723 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002724 PF12849 PBP superfamily domain AYP_002725 PF00324 Amino acid permease AYP_002726 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYP_002726 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYP_002726 PF00205 Thiamine pyrophosphate enzyme, central domain AYP_002727 PF01037 Lrp/AsnC ligand binding domain AYP_002728 PF00171 Aldehyde dehydrogenase family AYP_002729 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYP_002730 PF00202 Aminotransferase class-III AYP_002732 PF00440 Bacterial regulatory proteins, tetR family AYP_002732 PF17754 MftR C-terminal domain AYP_002734 PF00487 Fatty acid desaturase AYP_002735 PF00970 Oxidoreductase FAD-binding domain AYP_002735 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_002735 PF00175 Oxidoreductase NAD-binding domain AYP_002736 PF00440 Bacterial regulatory proteins, tetR family AYP_002738 PF12137 RNA polymerase recycling family C-terminal AYP_002738 PF18337 RapA N-terminal Tudor like domain AYP_002738 PF00271 Helicase conserved C-terminal domain AYP_002738 PF00176 SNF2 family N-terminal domain AYP_002738 PF18339 RapA N-terminal Tudor like domain 1 AYP_002739 PF00849 RNA pseudouridylate synthase AYP_002741 PF00202 Aminotransferase class-III AYP_002742 PF02581 Thiamine monophosphate synthase AYP_002747 PF00675 Insulinase (Peptidase family M16) AYP_002747 PF05193 Peptidase M16 inactive domain AYP_002748 PF02567 Phenazine biosynthesis-like protein AYP_002750 PF03466 LysR substrate binding domain AYP_002750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002751 PF06779 Uncharacterised MFS-type transporter YbfB AYP_002754 PF00180 Isocitrate/isopropylmalate dehydrogenase AYP_002755 PF00849 RNA pseudouridylate synthase AYP_002756 PF03971 Monomeric isocitrate dehydrogenase AYP_002758 PF07943 Penicillin-binding protein 5, C-terminal domain AYP_002758 PF00768 D-alanyl-D-alanine carboxypeptidase AYP_002759 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_002760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_002761 PF03441 FAD binding domain of DNA photolyase AYP_002761 PF00875 DNA photolyase AYP_002767 PF02350 UDP-N-acetylglucosamine 2-epimerase AYP_002770 PF03060 Nitronate monooxygenase AYP_002771 PF01207 Dihydrouridine synthase (Dus) AYP_002772 PF00589 Phage integrase family AYP_002840 PF07759 Protein of unknown function (DUF1615) AYP_002842 PF00696 Amino acid kinase family AYP_002842 PF01472 PUA domain AYP_002843 PF01926 50S ribosome-binding GTPase AYP_002843 PF01018 GTP1/OBG AYP_002847 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYP_002847 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYP_002848 PF00892 EamA-like transporter family AYP_002850 PF12344 Ultra-violet resistance protein B AYP_002850 PF02151 UvrB/uvrC motif AYP_002850 PF04851 Type III restriction enzyme, res subunit AYP_002850 PF17757 UvrB interaction domain AYP_002850 PF00271 Helicase conserved C-terminal domain AYP_002852 PF00990 Diguanylate cyclase, GGDEF domain AYP_002852 PF17151 Periplasmic sensor domain AYP_002859 PF00106 short chain dehydrogenase AYP_002860 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AYP_002861 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYP_002862 PF02565 Recombination protein O C terminal AYP_002862 PF11967 Recombination protein O N terminal AYP_002864 PF07650 KH domain AYP_002864 PF01926 50S ribosome-binding GTPase AYP_002865 PF14622 Ribonuclease-III-like AYP_002865 PF00035 Double-stranded RNA binding motif AYP_002867 PF10502 Signal peptidase, peptidase S26 AYP_002868 PF00009 Elongation factor Tu GTP binding domain AYP_002868 PF06421 GTP-binding protein LepA C-terminus AYP_002868 PF00679 Elongation factor G C-terminus AYP_002868 PF03144 Elongation factor Tu domain 2 AYP_002870 PF13180 PDZ domain AYP_002871 PF02910 Fumarate reductase flavoprotein C-term AYP_002871 PF00890 FAD binding domain AYP_002873 PF02223 Thymidylate kinase AYP_002874 PF02618 YceG-like family AYP_002875 PF01063 Amino-transferase class IV AYP_002879 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002880 PF00528 Binding-protein-dependent transport system inner membrane component AYP_002881 PF00005 ABC transporter AYP_002881 PF12857 TOBE-like domain AYP_002882 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_002882 PF03466 LysR substrate binding domain AYP_002884 PF14602 Hexapeptide repeat of succinyl-transferase AYP_002884 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AYP_002884 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_002886 PF06508 Queuosine biosynthesis protein QueC AYP_002889 PF00578 AhpC/TSA family AYP_002892 PF00378 Enoyl-CoA hydratase/isomerase AYP_002893 PF01784 NIF3 (NGG1p interacting factor 3) AYP_002896 PF07690 Major Facilitator Superfamily AYP_002897 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYP_002897 PF02769 AIR synthase related protein, C-terminal domain AYP_002897 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AYP_002898 PF01966 HD domain AYP_002899 PF07499 RuvA, C-terminal domain AYP_002899 PF01330 RuvA N terminal domain AYP_002900 PF17864 RuvB AAA lid domain AYP_002900 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYP_002900 PF05491 RuvB C-terminal winged helix domain AYP_002901 PF01546 Peptidase family M20/M25/M40 AYP_002901 PF07687 Peptidase dimerisation domain AYP_002902 PF03061 Thioesterase superfamily AYP_002903 PF01618 MotA/TolQ/ExbB proton channel family AYP_002904 PF02472 Biopolymer transport protein ExbD/TolR AYP_002906 PF07676 WD40-like Beta Propeller Repeat AYP_002906 PF04052 TolB amino-terminal domain AYP_002907 PF00691 OmpA family AYP_002909 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYP_002910 PF00588 SpoU rRNA Methylase family AYP_002910 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYP_002916 PF00308 Bacterial dnaA protein AYP_002916 PF08299 Bacterial dnaA protein helix-turn-helix AYP_002916 PF11638 DnaA N-terminal domain AYP_002917 PF01594 AI-2E family transporter AYP_002918 PF00586 AIR synthase related protein, N-terminal domain AYP_002918 PF02769 AIR synthase related protein, C-terminal domain AYP_002919 PF00551 Formyl transferase AYP_002920 PF12697 Alpha/beta hydrolase family AYP_002921 PF06965 Na+/H+ antiporter 1 AYP_002921 PF01343 Peptidase family S49 AYP_002923 PF00753 Metallo-beta-lactamase superfamily AYP_002923 PF13567 Domain of unknown function (DUF4131) AYP_002923 PF03772 Competence protein AYP_002924 PF00005 ABC transporter AYP_002925 PF12704 MacB-like periplasmic core domain AYP_002925 PF02687 FtsX-like permease family AYP_002927 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AYP_002930 PF00266 Aminotransferase class-V AYP_002933 PF13533 Biotin-lipoyl like AYP_002937 PF00535 Glycosyl transferase family 2 AYP_002940 PF00521 DNA gyrase/topoisomerase IV, subunit A AYP_002940 PF03989 DNA gyrase C-terminal domain, beta-propeller AYP_002941 PF00766 Electron transfer flavoprotein FAD-binding domain AYP_002941 PF01012 Electron transfer flavoprotein domain AYP_002942 PF01012 Electron transfer flavoprotein domain AYP_002943 PF00589 Phage integrase family AYP_002943 PF02899 Phage integrase, N-terminal SAM-like domain AYP_002944 PF01810 LysE type translocator AYP_002945 PF01678 Diaminopimelate epimerase AYP_002946 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYP_002946 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYP_002948 PF00324 Amino acid permease AYP_002950 PF18073 Rubredoxin metal binding domain AYP_002952 PF00152 tRNA synthetases class II (D, K and N) AYP_002953 PF11890 Domain of unknown function (DUF3410) AYP_002953 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_002953 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_002954 PF06803 Protein of unknown function (DUF1232) AYP_002955 PF02634 FdhD/NarQ family AYP_002956 PF00384 Molybdopterin oxidoreductase AYP_002957 PF02595 Glycerate kinase family AYP_002960 PF00881 Nitroreductase family AYP_002965 PF00501 AMP-binding enzyme AYP_002965 PF13193 AMP-binding enzyme C-terminal domain AYP_002965 PF00975 Thioesterase domain AYP_002965 PF00668 Condensation domain AYP_002965 PF00550 Phosphopantetheine attachment site AYP_002968 PF01272 Transcription elongation factor, GreA/GreB, C-term AYP_002968 PF03449 Transcription elongation factor, N-terminal AYP_002969 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_002969 PF01464 Transglycosylase SLT domain AYP_002971 PF01171 PP-loop family AYP_002972 PF01464 Transglycosylase SLT domain AYP_002973 PF01435 Peptidase family M48 AYP_002975 PF00873 AcrB/AcrD/AcrF family AYP_002976 PF03009 Glycerophosphoryl diester phosphodiesterase family AYP_002977 PF00753 Metallo-beta-lactamase superfamily AYP_002978 PF01219 Prokaryotic diacylglycerol kinase AYP_002979 PF00118 TCP-1/cpn60 chaperonin family AYP_002980 PF00166 Chaperonin 10 Kd subunit AYP_002982 PF00149 Calcineurin-like phosphoesterase AYP_002983 PF00781 Diacylglycerol kinase catalytic domain AYP_002984 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AYP_002984 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AYP_002985 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AYP_002985 PF01266 FAD dependent oxidoreductase AYP_002986 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYP_002986 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYP_002987 PF00083 Sugar (and other) transporter AYP_002990 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYP_002990 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYP_002993 PF09423 PhoD-like phosphatase AYP_002993 PF16655 PhoD-like phosphatase, N-terminal domain AYP_002997 PF00809 Pterin binding enzyme AYP_002998 PF06480 FtsH Extracellular AYP_002998 PF17862 AAA+ lid domain AYP_002998 PF00004 ATPase family associated with various cellular activities (AAA) AYP_002998 PF01434 Peptidase family M41 AYP_002999 PF01728 FtsJ-like methyltransferase AYP_003000 PF01985 CRS1 / YhbY (CRM) domain AYP_003003 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYP_003003 PF00117 Glutamine amidotransferase class-I AYP_003004 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_003004 PF02142 MGS-like domain AYP_003004 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYP_003005 PF03449 Transcription elongation factor, N-terminal AYP_003005 PF01272 Transcription elongation factor, GreA/GreB, C-term AYP_003006 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_003007 PF00582 Universal stress protein family AYP_003008 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYP_003010 PF09587 Bacterial capsule synthesis protein PGA_cap AYP_003014 PF00999 Sodium/hydrogen exchanger family AYP_003015 PF04228 Putative neutral zinc metallopeptidase AYP_003016 PF05661 Protein of unknown function (DUF808) AYP_003017 PF00579 tRNA synthetases class I (W and Y) AYP_003018 PF02629 CoA binding domain AYP_003018 PF00549 CoA-ligase AYP_003019 PF00549 CoA-ligase AYP_003019 PF08442 ATP-grasp domain AYP_003020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_003020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_003021 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYP_003021 PF00364 Biotin-requiring enzyme AYP_003021 PF02817 e3 binding domain AYP_003022 PF16078 2-oxoglutarate dehydrogenase N-terminus AYP_003022 PF00676 Dehydrogenase E1 component AYP_003022 PF16870 2-oxoglutarate dehydrogenase C-terminal AYP_003022 PF02779 Transketolase, pyrimidine binding domain AYP_003024 PF13085 2Fe-2S iron-sulfur cluster binding domain AYP_003025 PF02910 Fumarate reductase flavoprotein C-term AYP_003025 PF00890 FAD binding domain AYP_003026 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYP_003027 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYP_003028 PF00285 Citrate synthase, C-terminal domain AYP_003036 PF04546 Sigma-70, non-essential region AYP_003036 PF00140 Sigma-70 factor, region 1.2 AYP_003036 PF04542 Sigma-70 region 2 AYP_003036 PF04545 Sigma-70, region 4 AYP_003036 PF03979 Sigma-70 factor, region 1.1 AYP_003036 PF04539 Sigma-70 region 3 AYP_003037 PF04359 Protein of unknown function (DUF493) AYP_003038 PF03099 Biotin/lipoate A/B protein ligase family AYP_003040 PF00465 Iron-containing alcohol dehydrogenase AYP_003041 PF13520 Amino acid permease AYP_003042 PF03358 NADPH-dependent FMN reductase AYP_003043 PF01638 HxlR-like helix-turn-helix AYP_003044 PF00588 SpoU rRNA Methylase family AYP_003045 PF14824 Sirohaem biosynthesis protein central AYP_003045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYP_003045 PF10414 Sirohaem synthase dimerisation region AYP_003046 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYP_003046 PF02403 Seryl-tRNA synthetase N-terminal domain AYP_003048 PF03548 Outer membrane lipoprotein carrier protein LolA AYP_003049 PF01016 Ribosomal L27 protein AYP_003050 PF00829 Ribosomal prokaryotic L21 protein AYP_003051 PF00348 Polyprenyl synthetase AYP_003053 PF01569 PAP2 superfamily AYP_003054 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_003054 PF00529 HlyD membrane-fusion protein of T1SS AYP_003055 PF00873 AcrB/AcrD/AcrF family AYP_003056 PF02321 Outer membrane efflux protein AYP_003057 PF01906 Putative heavy-metal-binding AYP_003058 PF01906 Putative heavy-metal-binding AYP_003062 PF00133 tRNA synthetases class I (I, L, M and V) AYP_003062 PF10458 Valyl tRNA synthetase tRNA binding arm AYP_003062 PF08264 Anticodon-binding domain of tRNA AYP_003066 PF03466 LysR substrate binding domain AYP_003066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003067 PF00909 Ammonium Transporter Family AYP_003069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003069 PF00512 His Kinase A (phospho-acceptor) domain AYP_003069 PF08521 Two-component sensor kinase N-terminal AYP_003070 PF00486 Transcriptional regulatory protein, C terminal AYP_003070 PF00072 Response regulator receiver domain AYP_003071 PF00884 Sulfatase AYP_003071 PF08019 Phosphoethanolamine transferase EptA/EptB AYP_003075 PF01734 Patatin-like phospholipase AYP_003077 PF01145 SPFH domain / Band 7 family AYP_003078 PF04237 YjbR AYP_003079 PF00348 Polyprenyl synthetase AYP_003080 PF04303 PrpF protein AYP_003082 PF00324 Amino acid permease AYP_003084 PF01965 DJ-1/PfpI family AYP_003085 PF00550 Phosphopantetheine attachment site AYP_003085 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_003085 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_003085 PF16197 Ketoacyl-synthetase C-terminal extension AYP_003085 PF08990 Erythronolide synthase docking AYP_003085 PF09277 Erythronolide synthase, docking AYP_003085 PF00698 Acyl transferase domain AYP_003085 PF14765 Polyketide synthase dehydratase AYP_003085 PF08659 KR domain AYP_003085 PF08240 Alcohol dehydrogenase GroES-like domain AYP_003086 PF06719 AraC-type transcriptional regulator N-terminus AYP_003086 PF12833 Helix-turn-helix domain AYP_003087 PF02673 Bacitracin resistance protein BacA AYP_003093 PF02525 Flavodoxin-like fold AYP_003096 PF01507 Phosphoadenosine phosphosulfate reductase family AYP_003097 PF06974 Protein of unknown function (DUF1298) AYP_003097 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AYP_003099 PF10150 Ribonuclease E/G family AYP_003099 PF00575 S1 RNA binding domain AYP_003100 PF02545 Maf-like protein AYP_003101 PF04093 rod shape-determining protein MreD AYP_003102 PF04085 rod shape-determining protein MreC AYP_003104 PF02686 Glu-tRNAGln amidotransferase C subunit AYP_003105 PF01425 Amidase AYP_003106 PF02637 GatB domain AYP_003106 PF02934 GatB/GatE catalytic domain AYP_003112 PF05992 SbmA/BacA-like family AYP_003113 PF13291 ACT domain AYP_003113 PF00291 Pyridoxal-phosphate dependent enzyme AYP_003114 PF01734 Patatin-like phospholipase AYP_003115 PF01235 Sodium:alanine symporter family AYP_003118 PF00881 Nitroreductase family AYP_003119 PF07690 Major Facilitator Superfamily AYP_003120 PF12805 FUSC-like inner membrane protein yccS AYP_003122 PF00667 FAD binding domain AYP_003122 PF00258 Flavodoxin AYP_003122 PF00175 Oxidoreductase NAD-binding domain AYP_003130 PF03734 L,D-transpeptidase catalytic domain AYP_003130 PF17969 L,D-transpeptidase C-terminal domain AYP_003131 PF04304 Protein of unknown function (DUF454) AYP_003133 PF08085 Entericidin EcnA/B family AYP_003134 PF01546 Peptidase family M20/M25/M40 AYP_003134 PF07687 Peptidase dimerisation domain AYP_003136 PF01584 CheW-like domain AYP_003136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003136 PF00072 Response regulator receiver domain AYP_003136 PF01627 Hpt domain AYP_003137 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AYP_003137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYP_003138 PF01584 CheW-like domain AYP_003139 PF00072 Response regulator receiver domain AYP_003140 PF00072 Response regulator receiver domain AYP_003146 PF00873 AcrB/AcrD/AcrF family AYP_003147 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYP_003147 PF03129 Anticodon binding domain AYP_003147 PF04073 Aminoacyl-tRNA editing domain AYP_003148 PF07411 Domain of unknown function (DUF1508) AYP_003149 PF03831 PhnA domain AYP_003149 PF08274 PhnA Zinc-Ribbon AYP_003150 PF04343 Protein of unknown function, DUF488 AYP_003152 PF01571 Aminomethyltransferase folate-binding domain AYP_003153 PF10411 Disulfide bond isomerase protein N-terminus AYP_003153 PF13098 Thioredoxin-like domain AYP_003155 PF03547 Membrane transport protein AYP_003156 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_003157 PF00593 TonB dependent receptor AYP_003157 PF07715 TonB-dependent Receptor Plug Domain AYP_003158 PF02245 Methylpurine-DNA glycosylase (MPG) AYP_003159 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYP_003159 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYP_003159 PF06827 Zinc finger found in FPG and IleRS AYP_003162 PF01741 Large-conductance mechanosensitive channel, MscL AYP_003165 PF00860 Permease family AYP_003166 PF05175 Methyltransferase small domain AYP_003166 PF08468 Methyltransferase small domain N-terminal AYP_003167 PF00324 Amino acid permease AYP_003168 PF01139 tRNA-splicing ligase RtcB AYP_003170 PF00691 OmpA family AYP_003170 PF13505 Outer membrane protein beta-barrel domain AYP_003172 PF00108 Thiolase, N-terminal domain AYP_003172 PF02803 Thiolase, C-terminal domain AYP_003174 PF00893 Small Multidrug Resistance protein AYP_003178 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYP_003178 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYP_003179 PF01011 PQQ enzyme repeat AYP_003181 PF04966 Carbohydrate-selective porin, OprB family AYP_003182 PF02515 CoA-transferase family III AYP_003183 PF12833 Helix-turn-helix domain AYP_003183 PF02311 AraC-like ligand binding domain AYP_003184 PF02803 Thiolase, C-terminal domain AYP_003184 PF00108 Thiolase, N-terminal domain AYP_003185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_003185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_003185 PF00378 Enoyl-CoA hydratase/isomerase AYP_003191 PF03006 Haemolysin-III related AYP_003192 PF07690 Major Facilitator Superfamily AYP_003192 PF00083 Sugar (and other) transporter AYP_003194 PF01043 SecA preprotein cross-linking domain AYP_003194 PF07517 SecA DEAD-like domain AYP_003194 PF02810 SEC-C motif AYP_003194 PF07516 SecA Wing and Scaffold domain AYP_003195 PF00578 AhpC/TSA family AYP_003195 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYP_003196 PF00753 Metallo-beta-lactamase superfamily AYP_003199 PF02875 Mur ligase family, glutamate ligase domain AYP_003199 PF08245 Mur ligase middle domain AYP_003200 PF01039 Carboxyl transferase domain AYP_003201 PF00290 Tryptophan synthase alpha chain AYP_003207 PF00291 Pyridoxal-phosphate dependent enzyme AYP_003208 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYP_003209 PF07715 TonB-dependent Receptor Plug Domain AYP_003209 PF00593 TonB dependent receptor AYP_003210 PF01923 Cobalamin adenosyltransferase AYP_003214 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYP_003215 PF00072 Response regulator receiver domain AYP_003215 PF00486 Transcriptional regulatory protein, C terminal AYP_003216 PF00512 His Kinase A (phospho-acceptor) domain AYP_003216 PF00672 HAMP domain AYP_003216 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003218 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_003218 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_003218 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_003218 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_003219 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_003219 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_003219 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_003219 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_003220 PF03466 LysR substrate binding domain AYP_003220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003221 PF02798 Glutathione S-transferase, N-terminal domain AYP_003221 PF00043 Glutathione S-transferase, C-terminal domain AYP_003222 PF06146 Phosphate-starvation-inducible E AYP_003226 PF07715 TonB-dependent Receptor Plug Domain AYP_003226 PF00593 TonB dependent receptor AYP_003229 PF02938 GAD domain AYP_003229 PF01336 OB-fold nucleic acid binding domain AYP_003229 PF00152 tRNA synthetases class II (D, K and N) AYP_003230 PF11380 Stealth protein CR2, conserved region 2 AYP_003230 PF17101 Stealth protein CR1, conserved region 1 AYP_003230 PF17102 Stealth protein CR3, conserved region 3 AYP_003235 PF00534 Glycosyl transferases group 1 AYP_003235 PF13439 Glycosyltransferase Family 4 AYP_003236 PF00535 Glycosyl transferase family 2 AYP_003237 PF01522 Polysaccharide deacetylase AYP_003240 PF01063 Amino-transferase class IV AYP_003241 PF08335 GlnD PII-uridylyltransferase AYP_003241 PF03710 Glutamate-ammonia ligase adenylyltransferase AYP_003242 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003242 PF00512 His Kinase A (phospho-acceptor) domain AYP_003242 PF07689 KaiB domain AYP_003247 PF02547 Queuosine biosynthesis protein AYP_003250 PF01702 Queuine tRNA-ribosyltransferase AYP_003251 PF02699 Preprotein translocase subunit AYP_003252 PF13721 SecD export protein N-terminal TM region AYP_003252 PF02355 Protein export membrane protein AYP_003252 PF07549 SecD/SecF GG Motif AYP_003253 PF07549 SecD/SecF GG Motif AYP_003253 PF02355 Protein export membrane protein AYP_003254 PF04127 DNA / pantothenate metabolism flavoprotein AYP_003254 PF02441 Flavoprotein AYP_003255 PF04002 RadC-like JAB domain AYP_003257 PF01062 Bestrophin, RFP-TM, chloride channel AYP_003258 PF02811 PHP domain AYP_003259 PF04279 Intracellular septation protein A AYP_003260 PF03795 YCII-related domain AYP_003262 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYP_003262 PF01266 FAD dependent oxidoreductase AYP_003264 PF04461 Protein of unknown function (DUF520) AYP_003266 PF03061 Thioesterase superfamily AYP_003267 PF00085 Thioredoxin AYP_003268 PF00561 alpha/beta hydrolase fold AYP_003269 PF00753 Metallo-beta-lactamase superfamily AYP_003269 PF04273 Putative phosphatase (DUF442) AYP_003271 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_003271 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_003278 PF00990 Diguanylate cyclase, GGDEF domain AYP_003278 PF17152 Periplasmic sensor domain AYP_003279 PF01389 OmpA-like transmembrane domain AYP_003279 PF00691 OmpA family AYP_003280 PF00149 Calcineurin-like phosphoesterase AYP_003280 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYP_003281 PF13091 PLD-like domain AYP_003283 PF13167 GTP-binding GTPase N-terminal AYP_003283 PF01926 50S ribosome-binding GTPase AYP_003283 PF16360 GTP-binding GTPase Middle Region AYP_003288 PF13276 HTH-like domain AYP_003288 PF13333 Integrase core domain AYP_003288 PF00665 Integrase core domain AYP_003303 PF01464 Transglycosylase SLT domain AYP_003303 PF01551 Peptidase family M23 AYP_003303 PF10145 Phage-related minor tail protein AYP_003306 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AYP_003360 PF00149 Calcineurin-like phosphoesterase AYP_003361 PF00398 Ribosomal RNA adenine dimethylase AYP_003362 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYP_003363 PF00572 Ribosomal protein L13 AYP_003364 PF00380 Ribosomal protein S9/S16 AYP_003365 PF13417 Glutathione S-transferase, N-terminal domain AYP_003365 PF00043 Glutathione S-transferase, C-terminal domain AYP_003366 PF04386 Stringent starvation protein B AYP_003368 PF00364 Biotin-requiring enzyme AYP_003368 PF00289 Biotin carboxylase, N-terminal domain AYP_003368 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_003368 PF02785 Biotin carboxylase C-terminal domain AYP_003370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_003370 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_003370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_003371 PF01039 Carboxyl transferase domain AYP_003374 PF00440 Bacterial regulatory proteins, tetR family AYP_003374 PF17932 Tetracyclin repressor-like, C-terminal domain AYP_003375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_003375 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_003375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_003384 PF01066 CDP-alcohol phosphatidyltransferase AYP_003385 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AYP_003391 PF00056 lactate/malate dehydrogenase, NAD binding domain AYP_003391 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYP_003393 PF01551 Peptidase family M23 AYP_003393 PF01464 Transglycosylase SLT domain AYP_003393 PF10145 Phage-related minor tail protein AYP_003394 PF00919 Uncharacterized protein family UPF0004 AYP_003394 PF04055 Radical SAM superfamily AYP_003394 PF01938 TRAM domain AYP_003395 PF02562 PhoH-like protein AYP_003396 PF02130 Uncharacterized protein family UPF0054 AYP_003401 PF03358 NADPH-dependent FMN reductase AYP_003402 PF03631 Virulence factor BrkB AYP_003403 PF00892 EamA-like transporter family AYP_003404 PF12833 Helix-turn-helix domain AYP_003405 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYP_003414 PF17876 Cold shock domain AYP_003414 PF00575 S1 RNA binding domain AYP_003414 PF00773 RNB domain AYP_003414 PF08461 Ribonuclease R winged-helix domain AYP_003414 PF08206 Ribonuclease B OB domain AYP_003415 PF01432 Peptidase family M3 AYP_003416 PF09526 Probable metal-binding protein (DUF2387) AYP_003422 PF03937 Flavinator of succinate dehydrogenase AYP_003423 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_003423 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_003423 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_003424 PF00743 Flavin-binding monooxygenase-like AYP_003425 PF01196 Ribosomal protein L17 AYP_003426 PF01000 RNA polymerase Rpb3/RpoA insert domain AYP_003426 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYP_003426 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYP_003427 PF00163 Ribosomal protein S4/S9 N-terminal domain AYP_003427 PF01479 S4 domain AYP_003428 PF00411 Ribosomal protein S11 AYP_003429 PF00416 Ribosomal protein S13/S18 AYP_003430 PF00444 Ribosomal protein L36 AYP_003431 PF00344 SecY translocase AYP_003432 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYP_003433 PF00327 Ribosomal protein L30p/L7e AYP_003434 PF03719 Ribosomal protein S5, C-terminal domain AYP_003434 PF00333 Ribosomal protein S5, N-terminal domain AYP_003435 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYP_003436 PF00347 Ribosomal protein L6 AYP_003437 PF00410 Ribosomal protein S8 AYP_003438 PF00253 Ribosomal protein S14p/S29e AYP_003439 PF00673 ribosomal L5P family C-terminus AYP_003439 PF00281 Ribosomal protein L5 AYP_003440 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYP_003440 PF00467 KOW motif AYP_003441 PF00238 Ribosomal protein L14p/L23e AYP_003442 PF00366 Ribosomal protein S17 AYP_003443 PF00831 Ribosomal L29 protein AYP_003444 PF00252 Ribosomal protein L16p/L10e AYP_003445 PF07650 KH domain AYP_003445 PF00189 Ribosomal protein S3, C-terminal domain AYP_003446 PF00237 Ribosomal protein L22p/L17e AYP_003447 PF00203 Ribosomal protein S19 AYP_003448 PF03947 Ribosomal Proteins L2, C-terminal domain AYP_003448 PF00181 Ribosomal Proteins L2, RNA binding domain AYP_003449 PF00276 Ribosomal protein L23 AYP_003450 PF00573 Ribosomal protein L4/L1 family AYP_003451 PF00297 Ribosomal protein L3 AYP_003452 PF00338 Ribosomal protein S10p/S20e AYP_003453 PF00117 Glutamine amidotransferase class-I AYP_003454 PF01053 Cys/Met metabolism PLP-dependent enzyme AYP_003455 PF05872 Bacterial protein of unknown function (DUF853) AYP_003456 PF00970 Oxidoreductase FAD-binding domain AYP_003456 PF00175 Oxidoreductase NAD-binding domain AYP_003456 PF00042 Globin AYP_003457 PF02082 Transcriptional regulator AYP_003458 PF01926 50S ribosome-binding GTPase AYP_003460 PF00375 Sodium:dicarboxylate symporter family AYP_003462 PF01553 Acyltransferase AYP_003465 PF00271 Helicase conserved C-terminal domain AYP_003465 PF17191 RecG wedge domain AYP_003465 PF00270 DEAD/DEAH box helicase AYP_003466 PF00156 Phosphoribosyl transferase domain AYP_003467 PF00293 NUDIX domain AYP_003468 PF03641 Possible lysine decarboxylase AYP_003469 PF01544 CorA-like Mg2+ transporter protein AYP_003471 PF05494 MlaC protein AYP_003473 PF02405 Permease MlaE AYP_003474 PF00005 ABC transporter AYP_003476 PF12343 Cold shock protein DEAD box A AYP_003476 PF00271 Helicase conserved C-terminal domain AYP_003476 PF00270 DEAD/DEAH box helicase AYP_003476 PF03880 DbpA RNA binding domain AYP_003477 PF00459 Inositol monophosphatase family AYP_003478 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYP_003478 PF02779 Transketolase, pyrimidine binding domain AYP_003478 PF02780 Transketolase, C-terminal domain AYP_003479 PF00925 GTP cyclohydrolase II AYP_003480 PF01218 Coproporphyrinogen III oxidase AYP_003481 PF08501 Shikimate dehydrogenase substrate binding domain AYP_003481 PF01488 Shikimate / quinate 5-dehydrogenase AYP_003481 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYP_003483 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_003483 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_003483 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_003483 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_003485 PF04024 PspC domain AYP_003486 PF00571 CBS domain AYP_003491 PF02091 Glycyl-tRNA synthetase alpha subunit AYP_003492 PF02092 Glycyl-tRNA synthetase beta subunit AYP_003492 PF05746 DALR anticodon binding domain AYP_003494 PF00892 EamA-like transporter family AYP_003495 PF03466 LysR substrate binding domain AYP_003495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003501 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AYP_003502 PF04996 Succinylarginine dihydrolase AYP_003503 PF00171 Aldehyde dehydrogenase family AYP_003504 PF04958 Arginine N-succinyltransferase beta subunit AYP_003505 PF00202 Aminotransferase class-III AYP_003506 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYP_003506 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYP_003508 PF00324 Amino acid permease AYP_003514 PF13614 AAA domain AYP_003515 PF01594 AI-2E family transporter AYP_003516 PF00080 Copper/zinc superoxide dismutase (SODC) AYP_003517 PF12805 FUSC-like inner membrane protein yccS AYP_003518 PF07690 Major Facilitator Superfamily AYP_003520 PF02525 Flavodoxin-like fold AYP_003521 PF03992 Antibiotic biosynthesis monooxygenase AYP_003523 PF01565 FAD binding domain AYP_003523 PF02913 FAD linked oxidases, C-terminal domain AYP_003524 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_003524 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_003525 PF00892 EamA-like transporter family AYP_003526 PF00892 EamA-like transporter family AYP_003528 PF01925 Sulfite exporter TauE/SafE AYP_003529 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYP_003529 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYP_003529 PF09157 Pseudouridine synthase II TruB, C-terminal AYP_003530 PF03280 Proteobacterial lipase chaperone protein AYP_003531 PF00561 alpha/beta hydrolase fold AYP_003532 PF01245 Ribosomal protein L19 AYP_003533 PF01746 tRNA (Guanine-1)-methyltransferase AYP_003534 PF01782 RimM N-terminal domain AYP_003534 PF05239 PRC-barrel domain AYP_003535 PF00886 Ribosomal protein S16 AYP_003543 PF02401 LytB protein AYP_003544 PF00625 Guanylate kinase AYP_003545 PF01192 RNA polymerase Rpb6 AYP_003546 PF13291 ACT domain AYP_003546 PF04607 Region found in RelA / SpoT proteins AYP_003546 PF02824 TGS domain AYP_003547 PF01042 Endoribonuclease L-PSP AYP_003548 PF04324 BFD-like [2Fe-2S] binding domain AYP_003550 PF00210 Ferritin-like domain AYP_003551 PF04932 O-Antigen ligase AYP_003551 PF11846 Virulence factor membrane-bound polymerase, C-terminal AYP_003551 PF15864 Protein glycosylation ligase AYP_003553 PF07963 Prokaryotic N-terminal methylation motif AYP_003553 PF00114 Pilin (bacterial filament) AYP_003555 PF04536 TPM domain AYP_003556 PF04011 LemA family AYP_003558 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYP_003558 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_003559 PF04898 Glutamate synthase central domain AYP_003559 PF00310 Glutamine amidotransferases class-II AYP_003559 PF01493 GXGXG motif AYP_003559 PF01645 Conserved region in glutamate synthase AYP_003561 PF01761 3-dehydroquinate synthase AYP_003562 PF01202 Shikimate kinase AYP_003563 PF11741 AMIN domain AYP_003563 PF00263 Bacterial type II and III secretion system protein AYP_003563 PF03958 Bacterial type II/III secretion system short domain AYP_003563 PF07660 Secretin and TonB N terminus short domain AYP_003568 PF00912 Transglycosylase AYP_003568 PF17092 Penicillin-binding protein OB-like domain AYP_003568 PF00905 Penicillin binding protein transpeptidase domain AYP_003569 PF13847 Methyltransferase domain AYP_003571 PF00953 Glycosyl transferase family 4 AYP_003572 PF02875 Mur ligase family, glutamate ligase domain AYP_003572 PF01225 Mur ligase family, catalytic domain AYP_003572 PF08245 Mur ligase middle domain AYP_003573 PF01225 Mur ligase family, catalytic domain AYP_003573 PF02875 Mur ligase family, glutamate ligase domain AYP_003573 PF08245 Mur ligase middle domain AYP_003574 PF03717 Penicillin-binding Protein dimerisation domain AYP_003574 PF00905 Penicillin binding protein transpeptidase domain AYP_003576 PF01795 MraW methylase family AYP_003579 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYP_003582 PF00324 Amino acid permease AYP_003588 PF01545 Cation efflux family AYP_003589 PF00873 AcrB/AcrD/AcrF family AYP_003590 PF00529 HlyD membrane-fusion protein of T1SS AYP_003590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_003594 PF04191 Phospholipid methyltransferase AYP_003599 PF00005 ABC transporter AYP_003599 PF12848 ABC transporter AYP_003600 PF01053 Cys/Met metabolism PLP-dependent enzyme AYP_003601 PF00106 short chain dehydrogenase AYP_003602 PF01740 STAS domain AYP_003602 PF00916 Sulfate permease family AYP_003603 PF17674 HHH domain AYP_003603 PF00575 S1 RNA binding domain AYP_003603 PF16921 Tex protein YqgF-like domain AYP_003603 PF09371 Tex-like protein N-terminal domain AYP_003604 PF00072 Response regulator receiver domain AYP_003604 PF00486 Transcriptional regulatory protein, C terminal AYP_003605 PF00512 His Kinase A (phospho-acceptor) domain AYP_003605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003605 PF00672 HAMP domain AYP_003606 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AYP_003606 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AYP_003607 PF00583 Acetyltransferase (GNAT) family AYP_003611 PF00475 Imidazoleglycerol-phosphate dehydratase AYP_003612 PF00117 Glutamine amidotransferase class-I AYP_003615 PF00977 Histidine biosynthesis protein AYP_003618 PF03992 Antibiotic biosynthesis monooxygenase AYP_003621 PF01636 Phosphotransferase enzyme family AYP_003622 PF00977 Histidine biosynthesis protein AYP_003625 PF00230 Major intrinsic protein AYP_003631 PF02705 K+ potassium transporter AYP_003635 PF02525 Flavodoxin-like fold AYP_003636 PF01638 HxlR-like helix-turn-helix AYP_003642 PF12833 Helix-turn-helix domain AYP_003642 PF02311 AraC-like ligand binding domain AYP_003643 PF00248 Aldo/keto reductase family AYP_003647 PF03466 LysR substrate binding domain AYP_003647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003648 PF07690 Major Facilitator Superfamily AYP_003652 PF01593 Flavin containing amine oxidoreductase AYP_003653 PF02678 Pirin AYP_003653 PF05726 Pirin C-terminal cupin domain AYP_003654 PF00857 Isochorismatase family AYP_003655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003656 PF00171 Aldehyde dehydrogenase family AYP_003657 PF00202 Aminotransferase class-III AYP_003658 PF00392 Bacterial regulatory proteins, gntR family AYP_003658 PF00155 Aminotransferase class I and II AYP_003659 PF00324 Amino acid permease AYP_003661 PF03591 AzlC protein AYP_003663 PF00436 Single-strand binding protein family AYP_003664 PF07690 Major Facilitator Superfamily AYP_003666 PF02581 Thiamine monophosphate synthase AYP_003666 PF08543 Phosphomethylpyrimidine kinase AYP_003666 PF03070 TENA/THI-4/PQQC family AYP_003667 PF06942 GlpM protein AYP_003669 PF08240 Alcohol dehydrogenase GroES-like domain AYP_003669 PF00107 Zinc-binding dehydrogenase AYP_003670 PF16925 Tetracyclin repressor-like, C-terminal domain AYP_003670 PF00440 Bacterial regulatory proteins, tetR family AYP_003671 PF00005 ABC transporter AYP_003671 PF17755 UvrA DNA-binding domain AYP_003671 PF17760 UvrA interaction domain AYP_003673 PF00990 Diguanylate cyclase, GGDEF domain AYP_003673 PF17158 Membrane-associated sensor, integral membrane domain AYP_003675 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_003677 PF00474 Sodium:solute symporter family AYP_003678 PF04341 Protein of unknown function, DUF485 AYP_003679 PF00672 HAMP domain AYP_003679 PF00512 His Kinase A (phospho-acceptor) domain AYP_003679 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003679 PF01627 Hpt domain AYP_003679 PF00072 Response regulator receiver domain AYP_003681 PF00196 Bacterial regulatory proteins, luxR family AYP_003681 PF00072 Response regulator receiver domain AYP_003682 PF03358 NADPH-dependent FMN reductase AYP_003683 PF00296 Luciferase-like monooxygenase AYP_003684 PF00872 Transposase, Mutator family AYP_003685 PF01037 Lrp/AsnC ligand binding domain AYP_003686 PF00857 Isochorismatase family AYP_003687 PF13193 AMP-binding enzyme C-terminal domain AYP_003687 PF00501 AMP-binding enzyme AYP_003687 PF16177 Acetyl-coenzyme A synthetase N-terminus AYP_003689 PF00924 Mechanosensitive ion channel AYP_003690 PF04452 RNA methyltransferase AYP_003691 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYP_003692 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_003695 PF03462 PCRF domain AYP_003695 PF00472 RF-1 domain AYP_003697 PF01368 DHH family AYP_003697 PF02272 DHHA1 domain AYP_003697 PF17768 RecJ OB domain AYP_003698 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYP_003698 PF01243 Pyridoxamine 5'-phosphate oxidase AYP_003699 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_003699 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_003699 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_003699 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_003700 PF00571 CBS domain AYP_003700 PF00478 IMP dehydrogenase / GMP reductase domain AYP_003701 PF03692 Putative zinc- or iron-chelating domain AYP_003702 PF00258 Flavodoxin AYP_003702 PF01613 Flavin reductase like domain AYP_003703 PF00593 TonB dependent receptor AYP_003703 PF07715 TonB-dependent Receptor Plug Domain AYP_003704 PF01169 Uncharacterized protein family UPF0016 AYP_003706 PF00364 Biotin-requiring enzyme AYP_003706 PF02817 e3 binding domain AYP_003706 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYP_003707 PF17831 Pyruvate dehydrogenase E1 component middle domain AYP_003707 PF00456 Transketolase, thiamine diphosphate binding domain AYP_003708 PF01551 Peptidase family M23 AYP_003710 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYP_003711 PF00091 Tubulin/FtsZ family, GTPase domain AYP_003711 PF12327 FtsZ family, C-terminal domain AYP_003712 PF02491 SHS2 domain inserted in FTSA AYP_003713 PF03799 Cell division protein FtsQ AYP_003713 PF08478 POTRA domain, FtsQ-type AYP_003714 PF07478 D-ala D-ala ligase C-terminus AYP_003714 PF01820 D-ala D-ala ligase N-terminus AYP_003715 PF01225 Mur ligase family, catalytic domain AYP_003715 PF02875 Mur ligase family, glutamate ligase domain AYP_003715 PF08245 Mur ligase middle domain AYP_003716 PF03033 Glycosyltransferase family 28 N-terminal domain AYP_003716 PF04101 Glycosyltransferase family 28 C-terminal domain AYP_003717 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYP_003717 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYP_003719 PF07715 TonB-dependent Receptor Plug Domain AYP_003719 PF00593 TonB dependent receptor AYP_003720 PF00156 Phosphoribosyl transferase domain AYP_003721 PF03372 Endonuclease/Exonuclease/phosphatase family AYP_003722 PF03960 ArsC family AYP_003724 PF07859 alpha/beta hydrolase fold AYP_003725 PF07694 5TMR of 5TMR-LYT AYP_003725 PF00990 Diguanylate cyclase, GGDEF domain AYP_003726 PF02683 Cytochrome C biogenesis protein transmembrane region AYP_003726 PF11412 Disulphide bond corrector protein DsbC AYP_003732 PF00576 HIUase/Transthyretin family AYP_003733 PF00860 Permease family AYP_003735 PF01494 FAD binding domain AYP_003736 PF03561 Allantoicase repeat AYP_003737 PF04115 Ureidoglycolate lyase AYP_003738 PF00106 short chain dehydrogenase AYP_003740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003740 PF00986 DNA gyrase B subunit, carboxyl terminus AYP_003740 PF01751 Toprim domain AYP_003740 PF00204 DNA gyrase B AYP_003741 PF05728 Uncharacterised protein family (UPF0227) AYP_003744 PF00877 NlpC/P60 family AYP_003744 PF01476 LysM domain AYP_003745 PF04717 Type VI secretion system, phage-baseplate injector AYP_003746 PF02600 Disulfide bond formation protein DsbB AYP_003747 PF04262 Glutamate-cysteine ligase AYP_003750 PF04286 Protein of unknown function (DUF445) AYP_003751 PF00155 Aminotransferase class I and II AYP_003752 PF01554 MatE AYP_003753 PF00106 short chain dehydrogenase AYP_003755 PF00072 Response regulator receiver domain AYP_003755 PF00486 Transcriptional regulatory protein, C terminal AYP_003756 PF00989 PAS fold AYP_003756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_003756 PF00512 His Kinase A (phospho-acceptor) domain AYP_003756 PF11808 Phosphate regulon sensor protein PhoR AYP_003760 PF03069 Acetamidase/Formamidase family AYP_003761 PF02666 Phosphatidylserine decarboxylase AYP_003762 PF00581 Rhodanese-like domain AYP_003763 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AYP_003763 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYP_003764 PF02580 D-Tyr-tRNA(Tyr) deacylase AYP_003769 PF00925 GTP cyclohydrolase II AYP_003769 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYP_003770 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYP_003771 PF01029 NusB family AYP_003772 PF00586 AIR synthase related protein, N-terminal domain AYP_003772 PF02769 AIR synthase related protein, C-terminal domain AYP_003774 PF04608 Phosphatidylglycerophosphatase A AYP_003775 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_003775 PF14602 Hexapeptide repeat of succinyl-transferase AYP_003775 PF12804 MobA-like NTP transferase domain AYP_003776 PF01380 SIS domain AYP_003777 PF01177 Asp/Glu/Hydantoin racemase AYP_003780 PF00491 Arginase family AYP_003781 PF01979 Amidohydrolase family AYP_003782 PF00324 Amino acid permease AYP_003783 PF00221 Aromatic amino acid lyase AYP_003784 PF17392 Urocanase C-terminal domain AYP_003784 PF17391 Urocanase N-terminal domain AYP_003784 PF01175 Urocanase Rossmann-like domain AYP_003785 PF05962 HutD AYP_003786 PF07702 UTRA domain AYP_003786 PF00392 Bacterial regulatory proteins, gntR family AYP_003788 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYP_003788 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYP_003790 PF00324 Amino acid permease AYP_003792 PF02798 Glutathione S-transferase, N-terminal domain AYP_003792 PF14497 Glutathione S-transferase, C-terminal domain AYP_003793 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_003795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_003796 PF04463 Protein of unknown function (DUF523) AYP_003797 PF01554 MatE AYP_003798 PF01758 Sodium Bile acid symporter family AYP_003799 PF00857 Isochorismatase family AYP_003800 PF00701 Dihydrodipicolinate synthetase family AYP_003802 PF01259 SAICAR synthetase AYP_003804 PF01226 Formate/nitrite transporter AYP_003805 PF16193 AAA C-terminal domain AYP_003805 PF00004 ATPase family associated with various cellular activities (AAA) AYP_003805 PF12002 MgsA AAA+ ATPase C terminal AYP_003806 PF07995 Glucose / Sorbosone dehydrogenase AYP_003807 PF03692 Putative zinc- or iron-chelating domain AYP_003808 PF07043 Protein of unknown function (DUF1328) AYP_003811 PF10576 Iron-sulfur binding domain of endonuclease III AYP_003811 PF00633 Helix-hairpin-helix motif AYP_003811 PF00730 HhH-GPD superfamily base excision DNA repair protein AYP_003811 PF14815 NUDIX domain AYP_003814 PF03352 Methyladenine glycosylase AYP_003815 PF00107 Zinc-binding dehydrogenase AYP_003815 PF08240 Alcohol dehydrogenase GroES-like domain AYP_003816 PF00155 Aminotransferase class I and II AYP_003816 PF00392 Bacterial regulatory proteins, gntR family AYP_003819 PF03466 LysR substrate binding domain AYP_003819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003820 PF00248 Aldo/keto reductase family AYP_003821 PF07690 Major Facilitator Superfamily AYP_003823 PF01113 Dihydrodipicolinate reductase, N-terminus AYP_003823 PF05173 Dihydrodipicolinate reductase, C-terminus AYP_003825 PF00684 DnaJ central domain AYP_003825 PF01556 DnaJ C terminal domain AYP_003825 PF00226 DnaJ domain AYP_003827 PF00873 AcrB/AcrD/AcrF family AYP_003828 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_003829 PF08361 MAATS-type transcriptional repressor, C-terminal region AYP_003829 PF00440 Bacterial regulatory proteins, tetR family AYP_003830 PF00311 Phosphoenolpyruvate carboxylase AYP_003831 PF00860 Permease family AYP_003832 PF03466 LysR substrate binding domain AYP_003832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003835 PF00920 Dehydratase family AYP_003836 PF00551 Formyl transferase AYP_003836 PF02911 Formyl transferase, C-terminal domain AYP_003837 PF01029 NusB family AYP_003837 PF01189 16S rRNA methyltransferase RsmB/F AYP_003839 PF00209 Sodium:neurotransmitter symporter family AYP_003848 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYP_003849 PF07859 alpha/beta hydrolase fold AYP_003852 PF03466 LysR substrate binding domain AYP_003852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_003853 PF01025 GrpE AYP_003854 PF00012 Hsp70 protein AYP_003858 PF13406 Transglycosylase SLT domain AYP_003859 PF02222 ATP-grasp domain AYP_003859 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYP_003860 PF00731 AIR carboxylase AYP_003863 PF01225 Mur ligase family, catalytic domain AYP_003863 PF08245 Mur ligase middle domain AYP_003863 PF02875 Mur ligase family, glutamate ligase domain AYP_003865 PF01569 PAP2 superfamily AYP_003866 PF03741 Integral membrane protein TerC family AYP_003868 PF03738 Glutathionylspermidine synthase preATP-grasp AYP_003869 PF00355 Rieske [2Fe-2S] domain AYP_003870 PF01979 Amidohydrolase family AYP_003872 PF00156 Phosphoribosyl transferase domain AYP_003874 PF10411 Disulfide bond isomerase protein N-terminus AYP_003874 PF13098 Thioredoxin-like domain AYP_003875 PF16916 Dimerisation domain of Zinc Transporter AYP_003875 PF01545 Cation efflux family AYP_003876 PF02583 Metal-sensitive transcriptional repressor AYP_003877 PF01926 50S ribosome-binding GTPase AYP_003877 PF12631 MnmE helical domain AYP_003877 PF10396 GTP-binding protein TrmE N-terminus AYP_003878 PF02096 60Kd inner membrane protein AYP_003878 PF14849 YidC periplasmic domain AYP_003879 PF01809 Putative membrane protein insertion efficiency factor AYP_003880 PF00825 Ribonuclease P AYP_003881 PF00468 Ribosomal protein L34 AYP_003894 PF09383 NIL domain AYP_003894 PF00005 ABC transporter AYP_003898 PF17757 UvrB interaction domain AYP_003898 PF00271 Helicase conserved C-terminal domain AYP_003898 PF00270 DEAD/DEAH box helicase AYP_003898 PF03461 TRCF domain AYP_003898 PF02559 CarD-like/TRCF domain AYP_003901 PF04650 YSIRK type signal peptide AYP_003901 PF01476 LysM domain AYP_003901 PF00746 LPXTG cell wall anchor motif AYP_003901 PF02216 B domain AYP_003901 PF03373 Octapeptide repeat AYP_003913 PF08240 Alcohol dehydrogenase GroES-like domain AYP_003913 PF13823 Alcohol dehydrogenase GroES-associated AYP_003913 PF00107 Zinc-binding dehydrogenase AYP_003916 PF13276 HTH-like domain AYP_003916 PF00665 Integrase core domain AYP_003916 PF13333 Integrase core domain AYP_003917 PF02583 Metal-sensitive transcriptional repressor AYP_003918 PF08240 Alcohol dehydrogenase GroES-like domain AYP_003918 PF00107 Zinc-binding dehydrogenase AYP_003919 PF00756 Putative esterase AYP_003921 PF00465 Iron-containing alcohol dehydrogenase AYP_003923 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_003925 PF16925 Tetracyclin repressor-like, C-terminal domain AYP_003925 PF00440 Bacterial regulatory proteins, tetR family AYP_003928 PF13737 Transposase DDE domain AYP_003933 PF00929 Exonuclease AYP_003942 PF00268 Ribonucleotide reductase, small chain AYP_003943 PF00317 Ribonucleotide reductase, all-alpha domain AYP_003943 PF02867 Ribonucleotide reductase, barrel domain AYP_003943 PF03477 ATP cone domain AYP_003947 PF02463 RecF/RecN/SMC N terminal domain AYP_003947 PF06470 SMC proteins Flexible Hinge Domain AYP_003951 PF03161 LAGLIDADG DNA endonuclease family AYP_003951 PF00154 recA bacterial DNA recombination protein AYP_003952 PF01612 3'-5' exonuclease AYP_003952 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYP_003952 PF01367 5'-3' exonuclease, C-terminal SAM fold AYP_003952 PF00476 DNA polymerase family A AYP_003955 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYP_003955 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYP_003955 PF14579 Helix-hairpin-helix motif AYP_003955 PF02811 PHP domain AYP_003957 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYP_003957 PF02811 PHP domain AYP_003957 PF14579 Helix-hairpin-helix motif AYP_003957 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYP_003965 PF02899 Phage integrase, N-terminal SAM-like domain AYP_003965 PF00589 Phage integrase family AYP_003967 PF07015 VirC1 protein AYP_003970 PF00625 Guanylate kinase AYP_003976 PF01807 CHC2 zinc finger AYP_003976 PF08275 DNA primase catalytic core, N-terminal domain AYP_003976 PF10410 DnaB-helicase binding domain of primase