AYP_000013	PWY-7883	AYP_000013
AYP_000024	PWY-7884	AYP_000024
AYP_000026	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AYP_000026	PWY-6167	flavin biosynthesis II (archaea)
AYP_000026	PWY-6168	flavin biosynthesis III (fungi)
AYP_000026	PWY-7863	AYP_000026
AYP_000035	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_000040	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AYP_000040	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AYP_000040	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AYP_000040	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AYP_000040	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AYP_000040	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AYP_000040	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AYP_000040	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AYP_000040	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AYP_000040	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AYP_000051	PWY-5316	nicotine biosynthesis
AYP_000051	PWY-5381	pyridine nucleotide cycling (plants)
AYP_000051	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYP_000051	PWY-7342	superpathway of nicotine biosynthesis
AYP_000060	PWY-6143	CMP-pseudaminate biosynthesis
AYP_000060	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
AYP_000060	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
AYP_000060	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
AYP_000060	PWY-7719	AYP_000060
AYP_000062	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYP_000062	PWY-6143	CMP-pseudaminate biosynthesis
AYP_000063	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_000063	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_000063	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_000063	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_000065	PWY-6143	CMP-pseudaminate biosynthesis
AYP_000073	PWY-3801	sucrose degradation II (sucrose synthase)
AYP_000073	PWY-6527	stachyose degradation
AYP_000073	PWY-7238	sucrose biosynthesis II
AYP_000073	PWY-7343	UDP-glucose biosynthesis
AYP_000073	PWY-7817	AYP_000073
AYP_000074	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AYP_000074	PWY-7820	AYP_000074
AYP_000075	PWY-3801	sucrose degradation II (sucrose synthase)
AYP_000075	PWY-5054	sorbitol biosynthesis I
AYP_000075	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AYP_000075	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYP_000075	PWY-5659	GDP-mannose biosynthesis
AYP_000075	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_000075	PWY-621	sucrose degradation III (sucrose invertase)
AYP_000075	PWY-622	starch biosynthesis
AYP_000075	PWY-6981	chitin biosynthesis
AYP_000075	PWY-6992	1,5-anhydrofructose degradation
AYP_000075	PWY-7238	sucrose biosynthesis II
AYP_000075	PWY-7347	sucrose biosynthesis III
AYP_000075	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYP_000076	PWY-3821	galactose degradation III
AYP_000076	PWY-6317	galactose degradation I (Leloir pathway)
AYP_000076	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AYP_000076	PWY-6527	stachyose degradation
AYP_000076	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AYP_000076	PWY-7344	UDP-D-galactose biosynthesis
AYP_000077	PWY-6749	CMP-legionaminate biosynthesis I
AYP_000082	PWY-5386	methylglyoxal degradation I
AYP_000082	PWY-7425	2-chloroacrylate degradation I
AYP_000083	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_000083	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AYP_000083	PWY-6638	sulfolactate degradation III
AYP_000083	PWY-6642	(<i>R</i>)-cysteate degradation
AYP_000083	PWY-6643	coenzyme M biosynthesis II
AYP_000083	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYP_000083	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYP_000083	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_000085	PWY-5747	2-methylcitrate cycle II
AYP_000104	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_000109	PWY-5642	2,4-dinitrotoluene degradation
AYP_000116	PWY-6157	autoinducer AI-1 biosynthesis
AYP_000127	PWY-6012	acyl carrier protein metabolism I
AYP_000127	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AYP_000127	PWY-6289	petrobactin biosynthesis
AYP_000138	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYP_000147	PWY-6339	syringate degradation
AYP_000160	PWY-7980	AYP_000160
AYP_000162	PWY-7980	AYP_000162
AYP_000185	PWY-6936	seleno-amino acid biosynthesis
AYP_000207	PWY-7805	AYP_000207
AYP_000207	PWY-7807	AYP_000207
AYP_000220	PWY-6614	tetrahydrofolate biosynthesis
AYP_000221	PWY-6749	CMP-legionaminate biosynthesis I
AYP_000244	PWY-7991	AYP_000244
AYP_000246	PWY-6167	flavin biosynthesis II (archaea)
AYP_000246	PWY-6168	flavin biosynthesis III (fungi)
AYP_000246	PWY-7980	AYP_000246
AYP_000253	PWY-1042	glycolysis IV (plant cytosol)
AYP_000253	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYP_000253	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_000253	PWY-5723	Rubisco shunt
AYP_000253	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_000253	PWY-6886	1-butanol autotrophic biosynthesis
AYP_000253	PWY-6901	superpathway of glucose and xylose degradation
AYP_000253	PWY-7003	glycerol degradation to butanol
AYP_000253	PWY-7124	ethylene biosynthesis V (engineered)
AYP_000253	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYP_000266	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_000266	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_000267	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_000267	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_000267	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_000267	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_000272	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AYP_000280	PWY-4983	L-citrulline-nitric oxide cycle
AYP_000280	PWY-4984	urea cycle
AYP_000280	PWY-5	canavanine biosynthesis
AYP_000280	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_000280	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_000283	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYP_000283	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYP_000284	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYP_000284	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYP_000293	PWY-181	photorespiration
AYP_000294	PWY-5958	acridone alkaloid biosynthesis
AYP_000294	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYP_000294	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYP_000327	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYP_000327	PWY-6435	4-hydroxybenzoate biosynthesis V
AYP_000327	PWY-6863	pyruvate fermentation to hexanol
AYP_000327	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_000327	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_000327	PWY-6948	sitosterol degradation to androstenedione
AYP_000327	PWY-7094	fatty acid salvage
AYP_000327	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
AYP_000327	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AYP_000327	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AYP_000327	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
AYP_000327	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AYP_000327	PWY-735	jasmonic acid biosynthesis
AYP_000327	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYP_000327	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_000327	PWY-7726	AYP_000327
AYP_000328	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_000328	PWY-5109	2-methylbutanoate biosynthesis
AYP_000328	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYP_000328	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
AYP_000328	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYP_000328	PWY-5177	glutaryl-CoA degradation
AYP_000328	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_000328	PWY-6435	4-hydroxybenzoate biosynthesis V
AYP_000328	PWY-6583	pyruvate fermentation to butanol I
AYP_000328	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
AYP_000328	PWY-6863	pyruvate fermentation to hexanol
AYP_000328	PWY-6883	pyruvate fermentation to butanol II
AYP_000328	PWY-6944	androstenedione degradation
AYP_000328	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_000328	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_000328	PWY-7007	methyl ketone biosynthesis
AYP_000328	PWY-7046	4-coumarate degradation (anaerobic)
AYP_000328	PWY-7094	fatty acid salvage
AYP_000328	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYP_000328	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
AYP_000328	PWY-7292	oleate &beta;-oxidation (thioesterase-dependent, yeast)
AYP_000328	PWY-7307	oleate &beta;-oxidation (reductase-dependent, yeast)
AYP_000328	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AYP_000328	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AYP_000328	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AYP_000328	PWY-735	jasmonic acid biosynthesis
AYP_000328	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYP_000328	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYP_000328	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_000328	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYP_000328	PWY-7726	AYP_000328
AYP_000328	PWY-7778	AYP_000328
AYP_000328	PWY-7779	AYP_000328
AYP_000334	PWY-5269	cardiolipin biosynthesis II
AYP_000334	PWY-5668	cardiolipin biosynthesis I
AYP_000334	PWY-7817	AYP_000334
AYP_000345	PWY-5532	adenosine nucleotides degradation IV
AYP_000345	PWY-7181	pyrimidine deoxyribonucleosides degradation
AYP_000348	PWY-7851	AYP_000348
AYP_000352	PWY-1042	glycolysis IV (plant cytosol)
AYP_000352	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_000352	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_000352	PWY-7003	glycerol degradation to butanol
AYP_000373	PWY-5839	menaquinol-7 biosynthesis
AYP_000373	PWY-5844	menaquinol-9 biosynthesis
AYP_000373	PWY-5849	menaquinol-6 biosynthesis
AYP_000373	PWY-5890	menaquinol-10 biosynthesis
AYP_000373	PWY-5891	menaquinol-11 biosynthesis
AYP_000373	PWY-5892	menaquinol-12 biosynthesis
AYP_000373	PWY-5895	menaquinol-13 biosynthesis
AYP_000400	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_000400	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_000407	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_000431	PWY-5506	methanol oxidation to formaldehyde IV
AYP_000442	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYP_000451	PWY-2941	L-lysine biosynthesis II
AYP_000451	PWY-2942	L-lysine biosynthesis III
AYP_000451	PWY-5097	L-lysine biosynthesis VI
AYP_000451	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_000451	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AYP_000451	PWY-6559	spermidine biosynthesis II
AYP_000451	PWY-6562	norspermidine biosynthesis
AYP_000451	PWY-7153	grixazone biosynthesis
AYP_000451	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_000451	PWY-7977	AYP_000451
AYP_000475	PWY-2201	folate transformations I
AYP_000475	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_000475	PWY-7909	AYP_000475
AYP_000481	PWY-3841	folate transformations II
AYP_000481	PWY-6614	tetrahydrofolate biosynthesis
AYP_000482	PWY-3841	folate transformations II
AYP_000482	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000482	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000482	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_000482	PWY-7199	pyrimidine deoxyribonucleosides salvage
AYP_000482	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_000495	PWY-5344	L-homocysteine biosynthesis
AYP_000497	PWY-6871	3-methylbutanol biosynthesis
AYP_000505	PWY-5392	reductive TCA cycle II
AYP_000505	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYP_000505	PWY-5690	TCA cycle II (plants and fungi)
AYP_000505	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_000505	PWY-6728	methylaspartate cycle
AYP_000505	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_000505	PWY-7254	TCA cycle VII (acetate-producers)
AYP_000505	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYP_000506	PWY-1281	sulfoacetaldehyde degradation I
AYP_000506	PWY-5482	pyruvate fermentation to acetate II
AYP_000506	PWY-5485	pyruvate fermentation to acetate IV
AYP_000506	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_000506	PWY-6637	sulfolactate degradation II
AYP_000507	PWY-5482	pyruvate fermentation to acetate II
AYP_000507	PWY-5485	pyruvate fermentation to acetate IV
AYP_000507	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_000508	PWY-5101	L-isoleucine biosynthesis II
AYP_000508	PWY-5103	L-isoleucine biosynthesis III
AYP_000508	PWY-5104	L-isoleucine biosynthesis IV
AYP_000508	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_000509	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYP_000509	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYP_000509	PWY-7242	D-fructuronate degradation
AYP_000509	PWY-7310	D-glucosaminate degradation
AYP_000509	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AYP_000511	PWY-5530	sorbitol biosynthesis II
AYP_000511	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_000513	PWY-3341	L-proline biosynthesis III
AYP_000513	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYP_000516	PWY-6902	chitin degradation II
AYP_000516	PWY-7822	AYP_000516
AYP_000516	PWY-7883	AYP_000516
AYP_000521	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_000521	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AYP_000521	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000521	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000521	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AYP_000521	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_000521	PWY-7205	CMP phosphorylation
AYP_000521	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_000521	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000521	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYP_000521	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000521	PWY-7224	purine deoxyribonucleosides salvage
AYP_000521	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000521	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYP_000546	PWY-5367	petroselinate biosynthesis
AYP_000546	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYP_000546	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYP_000546	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYP_000546	PWY-5994	palmitate biosynthesis I (animals and fungi)
AYP_000546	PWY-6113	superpathway of mycolate biosynthesis
AYP_000546	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYP_000546	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYP_000546	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYP_000546	PWY-7663	gondoate biosynthesis (anaerobic)
AYP_000546	PWY-7664	oleate biosynthesis IV (anaerobic)
AYP_000546	PWY-7858	AYP_000546
AYP_000546	PWYG-321	mycolate biosynthesis
AYP_000549	PWY-6012	acyl carrier protein metabolism I
AYP_000549	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AYP_000549	PWY-6289	petrobactin biosynthesis
AYP_000556	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYP_000556	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYP_000556	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYP_000556	PWY-6113	superpathway of mycolate biosynthesis
AYP_000556	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYP_000556	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYP_000556	PWY-7663	gondoate biosynthesis (anaerobic)
AYP_000556	PWY-7664	oleate biosynthesis IV (anaerobic)
AYP_000556	PWY-7858	AYP_000556
AYP_000556	PWYG-321	mycolate biosynthesis
AYP_000564	PWY-5101	L-isoleucine biosynthesis II
AYP_000564	PWY-5103	L-isoleucine biosynthesis III
AYP_000564	PWY-5104	L-isoleucine biosynthesis IV
AYP_000564	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYP_000564	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYP_000564	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYP_000564	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_000565	PWY-5101	L-isoleucine biosynthesis II
AYP_000565	PWY-5103	L-isoleucine biosynthesis III
AYP_000565	PWY-5104	L-isoleucine biosynthesis IV
AYP_000565	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYP_000565	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYP_000565	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYP_000565	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_000566	PWY-5103	L-isoleucine biosynthesis III
AYP_000566	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_000597	PWY-6936	seleno-amino acid biosynthesis
AYP_000605	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYP_000605	PWY-6148	tetrahydromethanopterin biosynthesis
AYP_000605	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYP_000605	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYP_000605	PWY-7852	AYP_000605
AYP_000605	PWY-7853	AYP_000605
AYP_000606	PWY-6654	phosphopantothenate biosynthesis III
AYP_000626	PWY-7980	AYP_000626
AYP_000629	PWY-4381	fatty acid biosynthesis initiation I
AYP_000629	PWY-5743	3-hydroxypropanoate cycle
AYP_000629	PWY-5744	glyoxylate assimilation
AYP_000629	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_000629	PWY-6722	candicidin biosynthesis
AYP_000631	PWY-3341	L-proline biosynthesis III
AYP_000631	PWY-4981	L-proline biosynthesis II (from arginine)
AYP_000631	PWY-6344	L-ornithine degradation II (Stickland reaction)
AYP_000653	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_000653	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_000653	PWY-7953	AYP_000653
AYP_000657	PWY-5958	acridone alkaloid biosynthesis
AYP_000657	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYP_000657	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYP_000671	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_000673	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYP_000673	PWY-5723	Rubisco shunt
AYP_000681	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_000682	PWY-5316	nicotine biosynthesis
AYP_000682	PWY-7342	superpathway of nicotine biosynthesis
AYP_000687	PWY-6609	adenine and adenosine salvage III
AYP_000687	PWY-6611	adenine and adenosine salvage V
AYP_000687	PWY-7179	purine deoxyribonucleosides degradation I
AYP_000687	PWY-7179-1	purine deoxyribonucleosides degradation
AYP_000706	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYP_000706	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AYP_000706	PWY-6936	seleno-amino acid biosynthesis
AYP_000706	PWY-702	L-methionine biosynthesis II
AYP_000729	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_000729	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000729	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_000729	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_000729	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000729	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000729	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000729	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYP_000731	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_000731	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000731	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_000731	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_000731	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000731	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_000731	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_000731	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYP_000749	PWY-7183	pyrimidine nucleobases salvage I
AYP_000779	PWY-3961	phosphopantothenate biosynthesis II
AYP_000780	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYP_000780	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYP_000793	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYP_000794	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AYP_000802	PWY-4381	fatty acid biosynthesis initiation I
AYP_000802	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AYP_000802	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYP_000803	PWY-5367	petroselinate biosynthesis
AYP_000803	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYP_000803	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYP_000803	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYP_000803	PWY-5994	palmitate biosynthesis I (animals and fungi)
AYP_000803	PWY-6113	superpathway of mycolate biosynthesis
AYP_000803	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYP_000803	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYP_000803	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYP_000803	PWY-7663	gondoate biosynthesis (anaerobic)
AYP_000803	PWY-7664	oleate biosynthesis IV (anaerobic)
AYP_000803	PWY-7858	AYP_000803
AYP_000803	PWYG-321	mycolate biosynthesis
AYP_000808	PWY-6167	flavin biosynthesis II (archaea)
AYP_000808	PWY-6168	flavin biosynthesis III (fungi)
AYP_000811	PWY-5155	&beta;-alanine biosynthesis III
AYP_000812	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AYP_000819	PWY-7560	methylerythritol phosphate pathway II
AYP_000822	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYP_000829	PWY-7851	AYP_000829
AYP_000842	PWY-5381	pyridine nucleotide cycling (plants)
AYP_000842	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYP_000842	PWY-7761	AYP_000842
AYP_000855	PWY-7802	AYP_000855
AYP_000856	PWY-7801	AYP_000856
AYP_000871	PWY-6749	CMP-legionaminate biosynthesis I
AYP_000872	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_000872	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_000882	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_000890	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYP_000890	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYP_000894	PWY-4041	&gamma;-glutamyl cycle
AYP_000894	PWY-4061	glutathione-mediated detoxification I
AYP_000894	PWY-5826	hypoglycin biosynthesis
AYP_000894	PWY-6842	glutathione-mediated detoxification II
AYP_000894	PWY-7112	4-hydroxy-2-nonenal detoxification
AYP_000894	PWY-7559	glutathione degradation (DUG pathway - yeast)
AYP_000910	PWY-7254	TCA cycle VII (acetate-producers)
AYP_000911	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYP_000911	PWY-7494	choline degradation IV
AYP_000912	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYP_000912	PWY-7494	choline degradation IV
AYP_000950	PWY-6317	galactose degradation I (Leloir pathway)
AYP_000955	PWY-6891	thiazole biosynthesis II (Bacillus)
AYP_000955	PWY-6892	thiazole biosynthesis I (E. coli)
AYP_000955	PWY-7560	methylerythritol phosphate pathway II
AYP_000957	PWY-2201	folate transformations I
AYP_000957	PWY-3841	folate transformations II
AYP_000957	PWY-7977	AYP_000957
AYP_000971	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYP_000971	PWY-5743	3-hydroxypropanoate cycle
AYP_000971	PWY-5744	glyoxylate assimilation
AYP_000971	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_000971	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_000971	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYP_000971	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYP_000976	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_000976	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_000976	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_000976	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_000988	PWY-5278	sulfite oxidation III
AYP_000988	PWY-5340	sulfate activation for sulfonation
AYP_000988	PWY-6683	sulfate reduction III (assimilatory)
AYP_000988	PWY-6932	selenate reduction
AYP_000989	PWY-5278	sulfite oxidation III
AYP_000989	PWY-5340	sulfate activation for sulfonation
AYP_000989	PWY-6683	sulfate reduction III (assimilatory)
AYP_000989	PWY-6932	selenate reduction
AYP_000995	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_001000	PWY-5704	urea degradation II
AYP_001001	PWY-5704	urea degradation II
AYP_001002	PWY-5704	urea degradation II
AYP_001003	PWY-5704	urea degradation II
AYP_001009	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_001009	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_001012	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYP_001118	PWY-5381	pyridine nucleotide cycling (plants)
AYP_001118	PWY-7761	AYP_001118
AYP_001130	PWY-5686	UMP biosynthesis
AYP_001130	PWY-7790	AYP_001130
AYP_001130	PWY-7791	AYP_001130
AYP_001132	PWY-4983	L-citrulline-nitric oxide cycle
AYP_001132	PWY-4984	urea cycle
AYP_001132	PWY-5	canavanine biosynthesis
AYP_001132	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_001132	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_001151	PWY-6614	tetrahydrofolate biosynthesis
AYP_001172	PWY-6614	tetrahydrofolate biosynthesis
AYP_001191	PWY-6610	adenine and adenosine salvage IV
AYP_001196	PWY-2941	L-lysine biosynthesis II
AYP_001196	PWY-2942	L-lysine biosynthesis III
AYP_001196	PWY-5097	L-lysine biosynthesis VI
AYP_001196	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AYP_001196	PWY-6559	spermidine biosynthesis II
AYP_001196	PWY-6562	norspermidine biosynthesis
AYP_001196	PWY-7153	grixazone biosynthesis
AYP_001196	PWY-7977	AYP_001196
AYP_001198	PWY-1042	glycolysis IV (plant cytosol)
AYP_001198	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_001198	PWY-6901	superpathway of glucose and xylose degradation
AYP_001198	PWY-7003	glycerol degradation to butanol
AYP_001200	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYP_001215	PWY-5686	UMP biosynthesis
AYP_001215	PWY-7790	AYP_001215
AYP_001215	PWY-7791	AYP_001215
AYP_001230	PWY-4381	fatty acid biosynthesis initiation I
AYP_001242	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_001256	PWY-3341	L-proline biosynthesis III
AYP_001256	PWY-4981	L-proline biosynthesis II (from arginine)
AYP_001256	PWY-6344	L-ornithine degradation II (Stickland reaction)
AYP_001313	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYP_001313	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AYP_001324	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_001339	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_001339	PWY-5109	2-methylbutanoate biosynthesis
AYP_001339	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYP_001339	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYP_001339	PWY-5177	glutaryl-CoA degradation
AYP_001339	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_001339	PWY-6435	4-hydroxybenzoate biosynthesis V
AYP_001339	PWY-6583	pyruvate fermentation to butanol I
AYP_001339	PWY-6863	pyruvate fermentation to hexanol
AYP_001339	PWY-6883	pyruvate fermentation to butanol II
AYP_001339	PWY-6944	androstenedione degradation
AYP_001339	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_001339	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_001339	PWY-7007	methyl ketone biosynthesis
AYP_001339	PWY-7046	4-coumarate degradation (anaerobic)
AYP_001339	PWY-7094	fatty acid salvage
AYP_001339	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYP_001339	PWY-735	jasmonic acid biosynthesis
AYP_001339	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYP_001339	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYP_001339	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_001339	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYP_001339	PWY-7726	AYP_001339
AYP_001339	PWY-7778	AYP_001339
AYP_001339	PWY-7779	AYP_001339
AYP_001350	PWY-4041	&gamma;-glutamyl cycle
AYP_001350	PWY-7942	AYP_001350
AYP_001362	PWY-5169	cyanurate degradation
AYP_001362	PWY-5703	urea degradation I
AYP_001369	PWY-5169	cyanurate degradation
AYP_001369	PWY-5703	urea degradation I
AYP_001369	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYP_001398	PWY-6700	queuosine biosynthesis
AYP_001424	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_001424	PWY-5109	2-methylbutanoate biosynthesis
AYP_001424	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYP_001424	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYP_001424	PWY-5177	glutaryl-CoA degradation
AYP_001424	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_001424	PWY-6435	4-hydroxybenzoate biosynthesis V
AYP_001424	PWY-6583	pyruvate fermentation to butanol I
AYP_001424	PWY-6863	pyruvate fermentation to hexanol
AYP_001424	PWY-6883	pyruvate fermentation to butanol II
AYP_001424	PWY-6944	androstenedione degradation
AYP_001424	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_001424	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_001424	PWY-7007	methyl ketone biosynthesis
AYP_001424	PWY-7046	4-coumarate degradation (anaerobic)
AYP_001424	PWY-7094	fatty acid salvage
AYP_001424	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYP_001424	PWY-735	jasmonic acid biosynthesis
AYP_001424	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYP_001424	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYP_001424	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_001424	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYP_001424	PWY-7726	AYP_001424
AYP_001424	PWY-7778	AYP_001424
AYP_001424	PWY-7779	AYP_001424
AYP_001425	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_001425	PWY-2361	3-oxoadipate degradation
AYP_001425	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYP_001426	PWY-1341	phenylacetate degradation II (anaerobic)
AYP_001426	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AYP_001426	PWY-7716	AYP_001426
AYP_001462	PWY-6832	2-aminoethylphosphonate degradation II
AYP_001469	PWY-723	alkylnitronates degradation
AYP_001473	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_001473	PWY-5109	2-methylbutanoate biosynthesis
AYP_001473	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYP_001473	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYP_001473	PWY-5177	glutaryl-CoA degradation
AYP_001473	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_001473	PWY-6435	4-hydroxybenzoate biosynthesis V
AYP_001473	PWY-6583	pyruvate fermentation to butanol I
AYP_001473	PWY-6863	pyruvate fermentation to hexanol
AYP_001473	PWY-6883	pyruvate fermentation to butanol II
AYP_001473	PWY-6944	androstenedione degradation
AYP_001473	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_001473	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_001473	PWY-7007	methyl ketone biosynthesis
AYP_001473	PWY-7046	4-coumarate degradation (anaerobic)
AYP_001473	PWY-7094	fatty acid salvage
AYP_001473	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYP_001473	PWY-735	jasmonic acid biosynthesis
AYP_001473	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYP_001473	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYP_001473	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_001473	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYP_001473	PWY-7726	AYP_001473
AYP_001473	PWY-7778	AYP_001473
AYP_001473	PWY-7779	AYP_001473
AYP_001490	PWY-4381	fatty acid biosynthesis initiation I
AYP_001490	PWY-5743	3-hydroxypropanoate cycle
AYP_001490	PWY-5744	glyoxylate assimilation
AYP_001490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_001490	PWY-6722	candicidin biosynthesis
AYP_001527	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYP_001529	PWY-6936	seleno-amino acid biosynthesis
AYP_001529	PWY-7274	D-cycloserine biosynthesis
AYP_001529	PWY-7870	AYP_001529
AYP_001534	PWY-4061	glutathione-mediated detoxification I
AYP_001534	PWY-6842	glutathione-mediated detoxification II
AYP_001534	PWY-7112	4-hydroxy-2-nonenal detoxification
AYP_001534	PWY-7533	gliotoxin biosynthesis
AYP_001543	PWY-5794	malonate degradation I (biotin-independent)
AYP_001543	PWY-6060	malonate degradation II (biotin-dependent)
AYP_001544	PWY-5796	malonate decarboxylase activation
AYP_001546	PWY-4381	fatty acid biosynthesis initiation I
AYP_001546	PWY-5743	3-hydroxypropanoate cycle
AYP_001546	PWY-5744	glyoxylate assimilation
AYP_001546	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_001546	PWY-6060	malonate degradation II (biotin-dependent)
AYP_001546	PWY-6722	candicidin biosynthesis
AYP_001547	PWY-6060	malonate degradation II (biotin-dependent)
AYP_001548	PWY-5796	malonate decarboxylase activation
AYP_001549	PWY-4381	fatty acid biosynthesis initiation I
AYP_001549	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AYP_001549	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYP_001567	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_001567	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_001574	PWY-4202	arsenate detoxification I (glutaredoxin)
AYP_001574	PWY-4621	arsenate detoxification II (glutaredoxin)
AYP_001584	PWY-6936	seleno-amino acid biosynthesis
AYP_001584	PWY-7274	D-cycloserine biosynthesis
AYP_001584	PWY-7870	AYP_001584
AYP_001639	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AYP_001640	PWY-6700	queuosine biosynthesis
AYP_001641	PWY-6938	NADH repair
AYP_001650	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYP_001650	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AYP_001651	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYP_001651	PWY-5723	Rubisco shunt
AYP_001651	PWY-6891	thiazole biosynthesis II (Bacillus)
AYP_001651	PWY-6892	thiazole biosynthesis I (E. coli)
AYP_001651	PWY-6901	superpathway of glucose and xylose degradation
AYP_001651	PWY-7560	methylerythritol phosphate pathway II
AYP_001659	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AYP_001659	PWY-6853	ethylene biosynthesis II (microbes)
AYP_001659	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYP_001676	PWY-1042	glycolysis IV (plant cytosol)
AYP_001676	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_001676	PWY-6886	1-butanol autotrophic biosynthesis
AYP_001676	PWY-6901	superpathway of glucose and xylose degradation
AYP_001676	PWY-7003	glycerol degradation to butanol
AYP_001678	PWY-1042	glycolysis IV (plant cytosol)
AYP_001678	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYP_001678	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_001678	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_001678	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYP_001690	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYP_001704	PWY-7205	CMP phosphorylation
AYP_001708	PWY-5686	UMP biosynthesis
AYP_001708	PWY-7790	AYP_001708
AYP_001708	PWY-7791	AYP_001708
AYP_001713	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_001713	PWY-7118	chitin degradation to ethanol
AYP_001713	PWY-7294	xylose degradation IV
AYP_001713	PWY-7295	L-arabinose degradation IV
AYP_001713	PWY-7854	AYP_001713
AYP_001746	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYP_001774	PWY-6269	adenosylcobalamin salvage from cobinamide II
AYP_001774	PWY-7962	AYP_001774
AYP_001774	PWY-7971	AYP_001774
AYP_001774	PWY-7972	AYP_001774
AYP_001775	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AYP_001775	PWY-6269	adenosylcobalamin salvage from cobinamide II
AYP_001775	PWY-7964	AYP_001775
AYP_001775	PWY-7965	AYP_001775
AYP_001775	PWY-7966	AYP_001775
AYP_001775	PWY-7967	AYP_001775
AYP_001775	PWY-7968	AYP_001775
AYP_001775	PWY-7969	AYP_001775
AYP_001775	PWY-7970	AYP_001775
AYP_001778	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AYP_001778	PWY-6269	adenosylcobalamin salvage from cobinamide II
AYP_001778	PWY-7961	AYP_001778
AYP_001778	PWY-7963	AYP_001778
AYP_001778	PWY-7964	AYP_001778
AYP_001778	PWY-7965	AYP_001778
AYP_001778	PWY-7966	AYP_001778
AYP_001778	PWY-7967	AYP_001778
AYP_001778	PWY-7968	AYP_001778
AYP_001778	PWY-7969	AYP_001778
AYP_001778	PWY-7970	AYP_001778
AYP_001778	PWY-7975	AYP_001778
AYP_001779	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYP_001779	PWY-6164	3-dehydroquinate biosynthesis I
AYP_001779	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AYP_001820	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_001826	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYP_001826	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYP_001830	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AYP_001830	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYP_001831	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYP_001854	PWY-5392	reductive TCA cycle II
AYP_001854	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYP_001854	PWY-5690	TCA cycle II (plants and fungi)
AYP_001854	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_001854	PWY-6728	methylaspartate cycle
AYP_001854	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_001854	PWY-7254	TCA cycle VII (acetate-producers)
AYP_001854	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYP_001878	PWY-2421	indole-3-acetate degradation VIII (bacterial)
AYP_001878	PWY-5648	2-nitrobenzoate degradation II
AYP_001878	PWY-6079	anthranilate degradation I (aerobic)
AYP_001879	PWY-2421	indole-3-acetate degradation VIII (bacterial)
AYP_001879	PWY-5648	2-nitrobenzoate degradation II
AYP_001879	PWY-6079	anthranilate degradation I (aerobic)
AYP_001884	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AYP_001890	PWY-6420	pyrroloquinoline quinone biosynthesis
AYP_001892	PWY-6823	molybdenum cofactor biosynthesis
AYP_001893	PWY-7533	gliotoxin biosynthesis
AYP_001902	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_001902	PWY-3162	L-tryptophan degradation V (side chain pathway)
AYP_001902	PWY-5057	L-valine degradation II
AYP_001902	PWY-5076	L-leucine degradation III
AYP_001902	PWY-5078	L-isoleucine degradation II
AYP_001902	PWY-5079	L-phenylalanine degradation III
AYP_001902	PWY-5082	L-methionine degradation III
AYP_001902	PWY-5480	pyruvate fermentation to ethanol I
AYP_001902	PWY-5486	pyruvate fermentation to ethanol II
AYP_001902	PWY-5751	phenylethanol biosynthesis
AYP_001902	PWY-6313	serotonin degradation
AYP_001902	PWY-6333	acetaldehyde biosynthesis I
AYP_001902	PWY-6342	noradrenaline and adrenaline degradation
AYP_001902	PWY-6587	pyruvate fermentation to ethanol III
AYP_001902	PWY-6802	salidroside biosynthesis
AYP_001902	PWY-6871	3-methylbutanol biosynthesis
AYP_001902	PWY-7013	L-1,2-propanediol degradation
AYP_001902	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_001902	PWY-7118	chitin degradation to ethanol
AYP_001902	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYP_001902	PWY-7798	AYP_001902
AYP_001939	PWY-5381	pyridine nucleotide cycling (plants)
AYP_001939	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYP_001939	PWY-6596	adenosine nucleotides degradation I
AYP_001939	PWY-6606	guanosine nucleotides degradation II
AYP_001939	PWY-6607	guanosine nucleotides degradation I
AYP_001939	PWY-6608	guanosine nucleotides degradation III
AYP_001939	PWY-7185	UTP and CTP dephosphorylation I
AYP_001939	PWY-7821	AYP_001939
AYP_001946	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYP_001961	PWY-2201	folate transformations I
AYP_001961	PWY-3841	folate transformations II
AYP_001963	PWY-5381	pyridine nucleotide cycling (plants)
AYP_001984	PWY-5101	L-isoleucine biosynthesis II
AYP_001984	PWY-5103	L-isoleucine biosynthesis III
AYP_001984	PWY-5104	L-isoleucine biosynthesis IV
AYP_001984	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_002015	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
AYP_002031	PWY-5451	acetone degradation I (to methylglyoxal)
AYP_002031	PWY-6588	pyruvate fermentation to acetone
AYP_002031	PWY-6876	isopropanol biosynthesis
AYP_002031	PWY-7466	acetone degradation III (to propane-1,2-diol)
AYP_002035	PWY-5451	acetone degradation I (to methylglyoxal)
AYP_002035	PWY-6588	pyruvate fermentation to acetone
AYP_002035	PWY-6876	isopropanol biosynthesis
AYP_002035	PWY-7466	acetone degradation III (to propane-1,2-diol)
AYP_002050	PWY-5101	L-isoleucine biosynthesis II
AYP_002050	PWY-5103	L-isoleucine biosynthesis III
AYP_002050	PWY-5104	L-isoleucine biosynthesis IV
AYP_002050	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_002055	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYP_002059	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_002059	PWY-2361	3-oxoadipate degradation
AYP_002059	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYP_002060	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYP_002064	PWY-5751	phenylethanol biosynthesis
AYP_002074	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYP_002091	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_002091	PWY-6416	quinate degradation II
AYP_002091	PWY-6707	gallate biosynthesis
AYP_002092	PWY-6041	4-sulfocatechol degradation
AYP_002093	PWY-6041	4-sulfocatechol degradation
AYP_002096	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYP_002097	PWY-6123	inosine-5'-phosphate biosynthesis I
AYP_002097	PWY-6124	inosine-5'-phosphate biosynthesis II
AYP_002097	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYP_002097	PWY-7234	inosine-5'-phosphate biosynthesis III
AYP_002098	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_002098	PWY-2361	3-oxoadipate degradation
AYP_002098	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYP_002101	PWY-7560	methylerythritol phosphate pathway II
AYP_002104	PWY-1042	glycolysis IV (plant cytosol)
AYP_002104	PWY-1622	formaldehyde assimilation I (serine pathway)
AYP_002104	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYP_002104	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_002104	PWY-5723	Rubisco shunt
AYP_002104	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_002104	PWY-6886	1-butanol autotrophic biosynthesis
AYP_002104	PWY-6901	superpathway of glucose and xylose degradation
AYP_002104	PWY-7003	glycerol degradation to butanol
AYP_002104	PWY-7124	ethylene biosynthesis V (engineered)
AYP_002104	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYP_002105	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYP_002105	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AYP_002106	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AYP_002106	PWY-7177	UTP and CTP dephosphorylation II
AYP_002106	PWY-7185	UTP and CTP dephosphorylation I
AYP_002115	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYP_002115	PWY-6164	3-dehydroquinate biosynthesis I
AYP_002115	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AYP_002120	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_002120	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_002124	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYP_002124	PWY-5723	Rubisco shunt
AYP_002128	PWY-6803	phosphatidylcholine acyl editing
AYP_002128	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AYP_002128	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AYP_002128	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AYP_002128	PWY-7783	AYP_002128
AYP_002152	PWY-7799	AYP_002152
AYP_002152	PWY-7800	AYP_002152
AYP_002166	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
AYP_002172	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AYP_002172	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AYP_002185	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYP_002185	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYP_002185	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYP_002185	PWY-5994	palmitate biosynthesis I (animals and fungi)
AYP_002185	PWY-6113	superpathway of mycolate biosynthesis
AYP_002185	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYP_002185	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYP_002185	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYP_002185	PWY-7663	gondoate biosynthesis (anaerobic)
AYP_002185	PWY-7664	oleate biosynthesis IV (anaerobic)
AYP_002185	PWY-7858	AYP_002185
AYP_002185	PWYG-321	mycolate biosynthesis
AYP_002190	PWY-7560	methylerythritol phosphate pathway II
AYP_002191	PWY-5667	CDP-diacylglycerol biosynthesis I
AYP_002191	PWY-5981	CDP-diacylglycerol biosynthesis III
AYP_002191	PWY-7817	AYP_002191
AYP_002201	PWY-4981	L-proline biosynthesis II (from arginine)
AYP_002201	PWY-4984	urea cycle
AYP_002201	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_002203	PWY-7560	methylerythritol phosphate pathway II
AYP_002209	PWY-5392	reductive TCA cycle II
AYP_002209	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYP_002209	PWY-5690	TCA cycle II (plants and fungi)
AYP_002209	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_002209	PWY-6728	methylaspartate cycle
AYP_002209	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_002209	PWY-7254	TCA cycle VII (acetate-producers)
AYP_002209	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYP_002218	PWY-6823	molybdenum cofactor biosynthesis
AYP_002219	PWY-6823	molybdenum cofactor biosynthesis
AYP_002220	PWY-6823	molybdenum cofactor biosynthesis
AYP_002220	PWY-7887	AYP_002220
AYP_002222	PWY-6823	molybdenum cofactor biosynthesis
AYP_002227	PWY-6683	sulfate reduction III (assimilatory)
AYP_002231	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_002231	PWY-6416	quinate degradation II
AYP_002231	PWY-6707	gallate biosynthesis
AYP_002305	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_002305	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_002305	PWY-7953	AYP_002305
AYP_002310	PWY-7782	AYP_002310
AYP_002310	PWY-7783	AYP_002310
AYP_002321	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYP_002321	PWY-5723	Rubisco shunt
AYP_002348	PWY-3461	L-tyrosine biosynthesis II
AYP_002348	PWY-3462	L-phenylalanine biosynthesis II
AYP_002348	PWY-6120	L-tyrosine biosynthesis III
AYP_002348	PWY-6627	salinosporamide A biosynthesis
AYP_002348	PWY-7626	bacilysin biosynthesis
AYP_002355	PWY-6897	thiamin salvage II
AYP_002355	PWY-7356	thiamin salvage IV (yeast)
AYP_002355	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYP_002375	PWY-2781	<i>cis</i>-zeatin biosynthesis
AYP_002390	PWY-5747	2-methylcitrate cycle II
AYP_002397	PWY-381	nitrate reduction II (assimilatory)
AYP_002397	PWY-5675	nitrate reduction V (assimilatory)
AYP_002397	PWY-6549	L-glutamine biosynthesis III
AYP_002397	PWY-6963	ammonia assimilation cycle I
AYP_002397	PWY-6964	ammonia assimilation cycle II
AYP_002403	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYP_002403	PWY-6148	tetrahydromethanopterin biosynthesis
AYP_002403	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYP_002403	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYP_002403	PWY-7852	AYP_002403
AYP_002403	PWY-7853	AYP_002403
AYP_002404	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYP_002404	PWY-6148	tetrahydromethanopterin biosynthesis
AYP_002404	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYP_002404	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYP_002427	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_002427	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_002430	PWY-3781	aerobic respiration I (cytochrome c)
AYP_002430	PWY-4521	arsenite oxidation I (respiratory)
AYP_002430	PWY-6692	Fe(II) oxidation
AYP_002430	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYP_002430	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AYP_002438	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_002450	PWY-6123	inosine-5'-phosphate biosynthesis I
AYP_002450	PWY-6124	inosine-5'-phosphate biosynthesis II
AYP_002450	PWY-7234	inosine-5'-phosphate biosynthesis III
AYP_002451	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYP_002451	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYP_002451	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYP_002455	PWY-5386	methylglyoxal degradation I
AYP_002463	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_002463	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_002469	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_002469	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AYP_002469	PWY-6638	sulfolactate degradation III
AYP_002469	PWY-6642	(<i>R</i>)-cysteate degradation
AYP_002469	PWY-6643	coenzyme M biosynthesis II
AYP_002469	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYP_002469	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYP_002469	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_002499	PWY-5642	2,4-dinitrotoluene degradation
AYP_002515	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYP_002515	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYP_002515	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYP_002515	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYP_002517	PWY-5686	UMP biosynthesis
AYP_002521	PWY-5667	CDP-diacylglycerol biosynthesis I
AYP_002521	PWY-5981	CDP-diacylglycerol biosynthesis III
AYP_002521	PWY-7902	AYP_002521
AYP_002530	PWY-6891	thiazole biosynthesis II (Bacillus)
AYP_002530	PWY-6892	thiazole biosynthesis I (E. coli)
AYP_002537	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_002537	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AYP_002538	PWY-3461	L-tyrosine biosynthesis II
AYP_002538	PWY-3462	L-phenylalanine biosynthesis II
AYP_002538	PWY-6120	L-tyrosine biosynthesis III
AYP_002538	PWY-6627	salinosporamide A biosynthesis
AYP_002538	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AYP_002538	PWY-7626	bacilysin biosynthesis
AYP_002544	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYP_002544	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYP_002544	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AYP_002545	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_002545	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_002545	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_002545	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_002547	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYP_002547	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYP_002547	PWY-6897	thiamin salvage II
AYP_002547	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYP_002547	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYP_002547	PWY-7356	thiamin salvage IV (yeast)
AYP_002547	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYP_002569	PWY-1622	formaldehyde assimilation I (serine pathway)
AYP_002569	PWY-181	photorespiration
AYP_002569	PWY-2161	folate polyglutamylation
AYP_002569	PWY-2201	folate transformations I
AYP_002569	PWY-3661	glycine betaine degradation I
AYP_002569	PWY-3661-1	glycine betaine degradation II (mammalian)
AYP_002569	PWY-3841	folate transformations II
AYP_002569	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_002577	PWY-6700	queuosine biosynthesis
AYP_002579	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_002579	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_002579	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_002579	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_002589	PWY-7799	AYP_002589
AYP_002589	PWY-7800	AYP_002589
AYP_002595	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYP_002595	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYP_002596	PWY-7094	fatty acid salvage
AYP_002596	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_002599	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYP_002600	PWY-2201	folate transformations I
AYP_002600	PWY-3841	folate transformations II
AYP_002603	PWY-1281	sulfoacetaldehyde degradation I
AYP_002603	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYP_002603	PWY-5482	pyruvate fermentation to acetate II
AYP_002603	PWY-5485	pyruvate fermentation to acetate IV
AYP_002603	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_002603	PWY-6637	sulfolactate degradation II
AYP_002603	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYP_002607	PWY-6854	ethylene biosynthesis III (microbes)
AYP_002615	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AYP_002615	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AYP_002615	PWY-6148	tetrahydromethanopterin biosynthesis
AYP_002615	PWY-7742	AYP_002615
AYP_002615	PWY-7745	AYP_002615
AYP_002615	PWY-7929	AYP_002615
AYP_002615	PWY-7934	AYP_002615
AYP_002615	PWY-7935	AYP_002615
AYP_002616	PWY-381	nitrate reduction II (assimilatory)
AYP_002616	PWY-5675	nitrate reduction V (assimilatory)
AYP_002616	PWY-6549	L-glutamine biosynthesis III
AYP_002616	PWY-6963	ammonia assimilation cycle I
AYP_002616	PWY-6964	ammonia assimilation cycle II
AYP_002619	PWY-5958	acridone alkaloid biosynthesis
AYP_002619	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYP_002619	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYP_002632	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_002632	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYP_002632	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AYP_002632	PWY-6596	adenosine nucleotides degradation I
AYP_002632	PWY-6606	guanosine nucleotides degradation II
AYP_002632	PWY-6607	guanosine nucleotides degradation I
AYP_002632	PWY-6608	guanosine nucleotides degradation III
AYP_002632	PWY-6999	theophylline degradation
AYP_002633	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_002633	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYP_002633	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AYP_002633	PWY-6596	adenosine nucleotides degradation I
AYP_002633	PWY-6606	guanosine nucleotides degradation II
AYP_002633	PWY-6607	guanosine nucleotides degradation I
AYP_002633	PWY-6608	guanosine nucleotides degradation III
AYP_002633	PWY-6999	theophylline degradation
AYP_002634	PWY-5663	tetrahydrobiopterin biosynthesis I
AYP_002634	PWY-5664	tetrahydrobiopterin biosynthesis II
AYP_002634	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYP_002634	PWY-6703	preQ<sub>0</sub> biosynthesis
AYP_002634	PWY-6983	tetrahydrobiopterin biosynthesis III
AYP_002634	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AYP_002634	PWY-7852	AYP_002634
AYP_002641	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AYP_002641	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AYP_002641	PWY-7766	AYP_002641
AYP_002643	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AYP_002643	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AYP_002643	PWY-6406	salicylate biosynthesis I
AYP_002644	PWY-6012	acyl carrier protein metabolism I
AYP_002644	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AYP_002644	PWY-6289	petrobactin biosynthesis
AYP_002649	PWY-6173	histamine biosynthesis
AYP_002687	PWY-5642	2,4-dinitrotoluene degradation
AYP_002688	PWY-5692	allantoin degradation to glyoxylate II
AYP_002688	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AYP_002704	PWY-5386	methylglyoxal degradation I
AYP_002709	PWY-5381	pyridine nucleotide cycling (plants)
AYP_002709	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYP_002709	PWY-6596	adenosine nucleotides degradation I
AYP_002709	PWY-6606	guanosine nucleotides degradation II
AYP_002709	PWY-6607	guanosine nucleotides degradation I
AYP_002709	PWY-6608	guanosine nucleotides degradation III
AYP_002709	PWY-7185	UTP and CTP dephosphorylation I
AYP_002709	PWY-7821	AYP_002709
AYP_002712	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_002712	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_002715	PWY-7887	AYP_002715
AYP_002715	PWY-7892	AYP_002715
AYP_002717	PWY-6123	inosine-5'-phosphate biosynthesis I
AYP_002717	PWY-6124	inosine-5'-phosphate biosynthesis II
AYP_002717	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYP_002717	PWY-7234	inosine-5'-phosphate biosynthesis III
AYP_002730	PWY-6409	pyoverdine I biosynthesis
AYP_002730	PWY-6562	norspermidine biosynthesis
AYP_002730	PWY-761	rhizobactin 1021 biosynthesis
AYP_002730	PWY-7855	AYP_002730
AYP_002730	PWY-7988	AYP_002730
AYP_002741	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYP_002742	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYP_002742	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYP_002742	PWY-6897	thiamin salvage II
AYP_002742	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYP_002742	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYP_002742	PWY-7356	thiamin salvage IV (yeast)
AYP_002742	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYP_002754	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_002754	PWY-6549	L-glutamine biosynthesis III
AYP_002754	PWY-6728	methylaspartate cycle
AYP_002754	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_002754	PWY-7124	ethylene biosynthesis V (engineered)
AYP_002754	PWY-7254	TCA cycle VII (acetate-producers)
AYP_002754	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYP_002756	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_002756	PWY-6549	L-glutamine biosynthesis III
AYP_002756	PWY-6728	methylaspartate cycle
AYP_002756	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_002756	PWY-7124	ethylene biosynthesis V (engineered)
AYP_002756	PWY-7254	TCA cycle VII (acetate-producers)
AYP_002756	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYP_002770	PWY-723	alkylnitronates degradation
AYP_002842	PWY-3341	L-proline biosynthesis III
AYP_002842	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYP_002847	PWY-1042	glycolysis IV (plant cytosol)
AYP_002847	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_002847	PWY-6901	superpathway of glucose and xylose degradation
AYP_002847	PWY-7003	glycerol degradation to butanol
AYP_002855	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_002871	PWY-5316	nicotine biosynthesis
AYP_002871	PWY-7342	superpathway of nicotine biosynthesis
AYP_002873	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_002873	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_002873	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_002873	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AYP_002873	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_002873	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_002875	PWY-6543	4-aminobenzoate biosynthesis
AYP_002885	PWY-6703	preQ<sub>0</sub> biosynthesis
AYP_002886	PWY-6703	preQ<sub>0</sub> biosynthesis
AYP_002888	PWY-6482	diphthamide biosynthesis (archaea)
AYP_002888	PWY-7546	diphthamide biosynthesis (eukaryotes)
AYP_002897	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYP_002897	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYP_002897	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYP_002909	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYP_002918	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYP_002918	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYP_002918	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYP_002919	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYP_002919	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AYP_002945	PWY-2941	L-lysine biosynthesis II
AYP_002945	PWY-5097	L-lysine biosynthesis VI
AYP_002946	PWY-2941	L-lysine biosynthesis II
AYP_002946	PWY-2942	L-lysine biosynthesis III
AYP_002946	PWY-5097	L-lysine biosynthesis VI
AYP_002954	PWY-7511	protein ubiquitylation
AYP_002966	PWY-2582	brassinosteroid biosynthesis II
AYP_002966	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_002966	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_002966	PWY-6948	sitosterol degradation to androstenedione
AYP_002966	PWY-699	brassinosteroid biosynthesis I
AYP_002966	PWY-7299	progesterone biosynthesis
AYP_002978	PWY-7039	phosphatidate metabolism, as a signaling molecule
AYP_002978	PWY-7817	AYP_002978
AYP_002984	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_002985	PWY-4261	glycerol degradation I
AYP_002985	PWY-6118	glycerol-3-phosphate shuttle
AYP_002985	PWY-6952	glycerophosphodiester degradation
AYP_002986	PWY-4261	glycerol degradation I
AYP_002990	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AYP_002990	PWY-2201	folate transformations I
AYP_002990	PWY-3841	folate transformations II
AYP_002990	PWY-5030	L-histidine degradation III
AYP_002990	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_002990	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AYP_002990	PWY-7909	AYP_002990
AYP_002997	PWY-6614	tetrahydrofolate biosynthesis
AYP_003003	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_003003	PWY-5686	UMP biosynthesis
AYP_003003	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_003003	PWY-7790	AYP_003003
AYP_003003	PWY-7791	AYP_003003
AYP_003004	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYP_003004	PWY-5686	UMP biosynthesis
AYP_003004	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYP_003004	PWY-7790	AYP_003004
AYP_003004	PWY-7791	AYP_003004
AYP_003018	PWY-5392	reductive TCA cycle II
AYP_003018	PWY-5537	pyruvate fermentation to acetate V
AYP_003018	PWY-5538	pyruvate fermentation to acetate VI
AYP_003018	PWY-5690	TCA cycle II (plants and fungi)
AYP_003018	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_003018	PWY-6728	methylaspartate cycle
AYP_003018	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_003018	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYP_003019	PWY-5392	reductive TCA cycle II
AYP_003019	PWY-5537	pyruvate fermentation to acetate V
AYP_003019	PWY-5538	pyruvate fermentation to acetate VI
AYP_003019	PWY-5690	TCA cycle II (plants and fungi)
AYP_003019	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_003019	PWY-6728	methylaspartate cycle
AYP_003019	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_003019	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYP_003020	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AYP_003020	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYP_003021	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYP_003022	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYP_003024	PWY-3781	aerobic respiration I (cytochrome c)
AYP_003024	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AYP_003024	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYP_003024	PWY-5690	TCA cycle II (plants and fungi)
AYP_003024	PWY-6728	methylaspartate cycle
AYP_003024	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_003024	PWY-7254	TCA cycle VII (acetate-producers)
AYP_003024	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYP_003025	PWY-3781	aerobic respiration I (cytochrome c)
AYP_003025	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AYP_003025	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYP_003025	PWY-5690	TCA cycle II (plants and fungi)
AYP_003025	PWY-6728	methylaspartate cycle
AYP_003025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_003025	PWY-7254	TCA cycle VII (acetate-producers)
AYP_003025	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYP_003038	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYP_003038	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYP_003045	PWY-5194	siroheme biosynthesis
AYP_003045	PWY-5196	factor 430 biosynthesis
AYP_003045	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AYP_003046	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AYP_003087	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AYP_003105	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYP_003178	PWY-6683	sulfate reduction III (assimilatory)
AYP_003185	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYP_003185	PWY-5109	2-methylbutanoate biosynthesis
AYP_003185	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYP_003185	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYP_003185	PWY-5177	glutaryl-CoA degradation
AYP_003185	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_003185	PWY-6435	4-hydroxybenzoate biosynthesis V
AYP_003185	PWY-6583	pyruvate fermentation to butanol I
AYP_003185	PWY-6863	pyruvate fermentation to hexanol
AYP_003185	PWY-6883	pyruvate fermentation to butanol II
AYP_003185	PWY-6944	androstenedione degradation
AYP_003185	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYP_003185	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYP_003185	PWY-7007	methyl ketone biosynthesis
AYP_003185	PWY-7046	4-coumarate degradation (anaerobic)
AYP_003185	PWY-7094	fatty acid salvage
AYP_003185	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYP_003185	PWY-735	jasmonic acid biosynthesis
AYP_003185	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYP_003185	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYP_003185	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYP_003185	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYP_003185	PWY-7726	AYP_003185
AYP_003185	PWY-7778	AYP_003185
AYP_003185	PWY-7779	AYP_003185
AYP_003199	PWY-2161	folate polyglutamylation
AYP_003200	PWY-4381	fatty acid biosynthesis initiation I
AYP_003200	PWY-5743	3-hydroxypropanoate cycle
AYP_003200	PWY-5744	glyoxylate assimilation
AYP_003200	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_003200	PWY-6722	candicidin biosynthesis
AYP_003213	PWY-5987	sorgoleone biosynthesis
AYP_003213	PWY-5996	oleate biosynthesis II (animals and fungi)
AYP_003240	PWY-5057	L-valine degradation II
AYP_003240	PWY-5076	L-leucine degradation III
AYP_003240	PWY-5078	L-isoleucine degradation II
AYP_003240	PWY-5101	L-isoleucine biosynthesis II
AYP_003240	PWY-5103	L-isoleucine biosynthesis III
AYP_003240	PWY-5104	L-isoleucine biosynthesis IV
AYP_003240	PWY-5108	L-isoleucine biosynthesis V
AYP_003240	PWY-7767	AYP_003240
AYP_003247	PWY-6700	queuosine biosynthesis
AYP_003250	PWY-6700	queuosine biosynthesis
AYP_003254	PWY-7851	AYP_003254
AYP_003262	PWY-7892	AYP_003262
AYP_003371	PWY-4381	fatty acid biosynthesis initiation I
AYP_003371	PWY-5743	3-hydroxypropanoate cycle
AYP_003371	PWY-5744	glyoxylate assimilation
AYP_003371	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_003371	PWY-6722	candicidin biosynthesis
AYP_003384	PWY-5669	phosphatidylethanolamine biosynthesis I
AYP_003391	PWY-1622	formaldehyde assimilation I (serine pathway)
AYP_003391	PWY-5392	reductive TCA cycle II
AYP_003391	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYP_003391	PWY-5690	TCA cycle II (plants and fungi)
AYP_003391	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_003391	PWY-6728	methylaspartate cycle
AYP_003391	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYP_003391	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYP_003391	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYP_003401	PWY-7731	AYP_003401
AYP_003462	PWY-5667	CDP-diacylglycerol biosynthesis I
AYP_003462	PWY-6453	stigma estolide biosynthesis
AYP_003462	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AYP_003462	PWY-7587	oleate biosynthesis III (cyanobacteria)
AYP_003478	PWY-6891	thiazole biosynthesis II (Bacillus)
AYP_003478	PWY-6892	thiazole biosynthesis I (E. coli)
AYP_003478	PWY-7560	methylerythritol phosphate pathway II
AYP_003479	PWY-6168	flavin biosynthesis III (fungi)
AYP_003479	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYP_003479	PWY-7991	AYP_003479
AYP_003480	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AYP_003481	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_003516	PWY-6854	ethylene biosynthesis III (microbes)
AYP_003533	PWY-6829	tRNA methylation (yeast)
AYP_003533	PWY-7285	methylwyosine biosynthesis
AYP_003533	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AYP_003543	PWY-7560	methylerythritol phosphate pathway II
AYP_003544	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYP_003561	PWY-6164	3-dehydroquinate biosynthesis I
AYP_003562	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYP_003568	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_003568	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_003568	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_003568	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_003571	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_003571	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_003571	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_003572	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_003572	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_003572	PWY-7953	AYP_003572
AYP_003574	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_003574	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_003579	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYP_003594	PWY-6825	phosphatidylcholine biosynthesis V
AYP_003602	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYP_003602	PWY-5743	3-hydroxypropanoate cycle
AYP_003602	PWY-5744	glyoxylate assimilation
AYP_003602	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYP_003602	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_003602	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYP_003602	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYP_003621	PWY-702	L-methionine biosynthesis II
AYP_003650	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_003666	PWY-6899	base-degraded thiamin salvage
AYP_003666	PWY-7356	thiamin salvage IV (yeast)
AYP_003683	PWY-6059	dimethyl sulfide degradation II (oxidation)
AYP_003687	PWY-5108	L-isoleucine biosynthesis V
AYP_003687	PWY-5132	humulone biosynthesis
AYP_003687	PWY-5133	cohumulone biosynthesis
AYP_003687	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AYP_003687	PWY-7118	chitin degradation to ethanol
AYP_003687	PWY-7857	AYP_003687
AYP_003691	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AYP_003697	PWY-7805	AYP_003697
AYP_003697	PWY-7807	AYP_003697
AYP_003698	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYP_003698	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYP_003699	PWY-6749	CMP-legionaminate biosynthesis I
AYP_003700	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYP_003700	PWY-6596	adenosine nucleotides degradation I
AYP_003700	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYP_003707	PWY-6891	thiazole biosynthesis II (Bacillus)
AYP_003707	PWY-6892	thiazole biosynthesis I (E. coli)
AYP_003707	PWY-7560	methylerythritol phosphate pathway II
AYP_003714	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_003714	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_003714	PWY-7953	AYP_003714
AYP_003715	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_003715	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_003715	PWY-7953	AYP_003715
AYP_003716	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYP_003716	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYP_003716	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_003716	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYP_003720	PWY-5686	UMP biosynthesis
AYP_003720	PWY-7790	AYP_003720
AYP_003720	PWY-7791	AYP_003720
AYP_003731	PWY-5691	urate degradation to allantoin I
AYP_003731	PWY-7394	urate degradation to allantoin II
AYP_003731	PWY-7849	AYP_003731
AYP_003732	PWY-5691	urate degradation to allantoin I
AYP_003732	PWY-7394	urate degradation to allantoin II
AYP_003732	PWY-7849	AYP_003732
AYP_003736	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
AYP_003737	PWY-5694	allantoin degradation to glyoxylate I
AYP_003737	PWY-5705	allantoin degradation to glyoxylate III
AYP_003747	PWY-6840	homoglutathione biosynthesis
AYP_003747	PWY-7255	ergothioneine biosynthesis I (bacteria)
AYP_003761	PWY-5669	phosphatidylethanolamine biosynthesis I
AYP_003762	PWY-5350	thiosulfate disproportionation III (rhodanese)
AYP_003762	PWY-7927	AYP_003762
AYP_003763	PWY-5381	pyridine nucleotide cycling (plants)
AYP_003769	PWY-6167	flavin biosynthesis II (archaea)
AYP_003769	PWY-6168	flavin biosynthesis III (fungi)
AYP_003769	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYP_003769	PWY-7991	AYP_003769
AYP_003770	PWY-6167	flavin biosynthesis II (archaea)
AYP_003770	PWY-6168	flavin biosynthesis III (fungi)
AYP_003772	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYP_003772	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYP_003772	PWY-6896	thiamin salvage I
AYP_003772	PWY-6897	thiamin salvage II
AYP_003775	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYP_003776	PWY-6749	CMP-legionaminate biosynthesis I
AYP_003777	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYP_003777	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYP_003781	PWY-5028	L-histidine degradation II
AYP_003781	PWY-5030	L-histidine degradation III
AYP_003783	PWY-5028	L-histidine degradation II
AYP_003783	PWY-5030	L-histidine degradation III
AYP_003784	PWY-5028	L-histidine degradation II
AYP_003784	PWY-5030	L-histidine degradation III
AYP_003789	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYP_003800	PWY-2941	L-lysine biosynthesis II
AYP_003800	PWY-2942	L-lysine biosynthesis III
AYP_003800	PWY-5097	L-lysine biosynthesis VI
AYP_003802	PWY-6123	inosine-5'-phosphate biosynthesis I
AYP_003802	PWY-6124	inosine-5'-phosphate biosynthesis II
AYP_003802	PWY-7234	inosine-5'-phosphate biosynthesis III
AYP_003823	PWY-2941	L-lysine biosynthesis II
AYP_003823	PWY-2942	L-lysine biosynthesis III
AYP_003823	PWY-5097	L-lysine biosynthesis VI
AYP_003830	PWY-1622	formaldehyde assimilation I (serine pathway)
AYP_003830	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYP_003830	PWY-5913	TCA cycle VI (obligate autotrophs)
AYP_003830	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYP_003830	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AYP_003830	PWY-6549	L-glutamine biosynthesis III
AYP_003830	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYP_003830	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYP_003830	PWY-7124	ethylene biosynthesis V (engineered)
AYP_003835	PWY-5101	L-isoleucine biosynthesis II
AYP_003835	PWY-5103	L-isoleucine biosynthesis III
AYP_003835	PWY-5104	L-isoleucine biosynthesis IV
AYP_003835	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_003860	PWY-6123	inosine-5'-phosphate biosynthesis I
AYP_003860	PWY-7234	inosine-5'-phosphate biosynthesis III
AYP_003863	PWY-7883	AYP_003863
AYP_003870	PWY-5497	purine nucleobases degradation II (anaerobic)
AYP_003870	PWY-6606	guanosine nucleotides degradation II
AYP_003870	PWY-6608	guanosine nucleotides degradation III
AYP_003870	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AYP_003872	PWY-6599	guanine and guanosine salvage II
AYP_003872	PWY-6609	adenine and adenosine salvage III
AYP_003872	PWY-6610	adenine and adenosine salvage IV
AYP_003872	PWY-6620	guanine and guanosine salvage
AYP_003918	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_003918	PWY-3162	L-tryptophan degradation V (side chain pathway)
AYP_003918	PWY-5057	L-valine degradation II
AYP_003918	PWY-5076	L-leucine degradation III
AYP_003918	PWY-5078	L-isoleucine degradation II
AYP_003918	PWY-5079	L-phenylalanine degradation III
AYP_003918	PWY-5082	L-methionine degradation III
AYP_003918	PWY-5480	pyruvate fermentation to ethanol I
AYP_003918	PWY-5486	pyruvate fermentation to ethanol II
AYP_003918	PWY-5751	phenylethanol biosynthesis
AYP_003918	PWY-6313	serotonin degradation
AYP_003918	PWY-6333	acetaldehyde biosynthesis I
AYP_003918	PWY-6342	noradrenaline and adrenaline degradation
AYP_003918	PWY-6587	pyruvate fermentation to ethanol III
AYP_003918	PWY-6802	salidroside biosynthesis
AYP_003918	PWY-6871	3-methylbutanol biosynthesis
AYP_003918	PWY-7013	L-1,2-propanediol degradation
AYP_003918	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYP_003918	PWY-7118	chitin degradation to ethanol
AYP_003918	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYP_003918	PWY-7798	AYP_003918
AYP_003919	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYP_003941	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_003942	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_003942	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_003942	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_003942	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_003942	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_003942	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_003942	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_003942	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYP_003943	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYP_003943	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_003943	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYP_003943	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYP_003943	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_003943	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYP_003943	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYP_003943	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYP_003961	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AYP_003970	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis