AYP_000001 SM00382 ATPases associated with a variety of cellular activities AYP_000001 SM00760 Bacterial dnaA protein helix-turn-helix domain AYP_000002 SM00480 DNA polymerase III beta subunit AYP_000004 SM00387 Histidine kinase-like ATPases AYP_000004 SM00433 TopoisomeraseII AYP_000007 SM00382 ATPases associated with a variety of cellular activities AYP_000021 SM00248 ankyrin repeats AYP_000026 SM00904 Riboflavin kinase AYP_000030 SM00382 ATPases associated with a variety of cellular activities AYP_000033 SM00062 Bacterial periplasmic substrate-binding proteins AYP_000034 SM00062 Bacterial periplasmic substrate-binding proteins AYP_000052 SM00644 AYP_000052 AYP_000057 SM00226 Low molecular weight phosphatase family AYP_000059 SM00984 UDP binding domain AYP_000065 SM00858 AYP_000065 AYP_000074 SM00984 UDP binding domain AYP_000080 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_000080 SM00895 AYP_000080 AYP_000084 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_000084 SM00895 AYP_000084 AYP_000092 SM00825 Beta-ketoacyl synthase AYP_000102 SM00344 helix_turn_helix ASNC type AYP_000104 SM01005 Alanine racemase, C-terminal domain AYP_000118 SM00421 helix_turn_helix, Lux Regulon AYP_000121 SM00823 Phosphopantetheine attachment site AYP_000121 SM01294 AYP_000121 AYP_000123 SM00823 Phosphopantetheine attachment site AYP_000123 SM00824 Thioesterase AYP_000146 SM00836 DALR anticodon binding domain AYP_000146 SM01016 Arginyl tRNA synthetase N terminal dom AYP_000147 SM00919 Malic enzyme, NAD binding domain AYP_000147 SM01274 AYP_000147 AYP_000152 SM00382 ATPases associated with a variety of cellular activities AYP_000162 SM00382 ATPases associated with a variety of cellular activities AYP_000166 SM00342 helix_turn_helix, arabinose operon control protein AYP_000189 SM00422 helix_turn_helix, mercury resistance AYP_000191 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_000195 SM00641 Glycosyl hydrolases family 25 AYP_000199 SM01091 Transporter associated domain AYP_000203 SM00434 DNA Topoisomerase IV AYP_000211 SM01130 AYP_000211 AYP_000212 SM01007 Class II Aldolase and Adducin N-terminal domain AYP_000213 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_000224 SM00382 ATPases associated with a variety of cellular activities AYP_000241 SM00938 Nitrogen regulatory protein P-II AYP_000254 SM00245 tail specific protease AYP_000255 SM00382 ATPases associated with a variety of cellular activities AYP_000255 SM00448 cheY-homologous receiver domain AYP_000256 SM00387 Histidine kinase-like ATPases AYP_000256 SM00388 His Kinase A (phosphoacceptor) domain AYP_000257 SM00421 helix_turn_helix, Lux Regulon AYP_000257 SM00448 cheY-homologous receiver domain AYP_000263 SM00899 AYP_000263 AYP_000282 SM00448 cheY-homologous receiver domain AYP_000282 SM00850 LytTr DNA-binding domain AYP_000288 SM00528 Domain in histone-like proteins of HNS family AYP_000290 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYP_000292 SM00240 Forkhead associated domain AYP_000302 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AYP_000302 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYP_000303 SM00649 Ribosomal protein L11/L12 AYP_000308 SM00663 RNA polymerase I subunit A N-terminus AYP_000318 SM00387 Histidine kinase-like ATPases AYP_000323 SM00422 helix_turn_helix, mercury resistance AYP_000332 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYP_000332 SM00465 GIY-YIG type nucleases (URI domain) AYP_000335 SM00342 helix_turn_helix, arabinose operon control protein AYP_000337 SM00346 helix_turn_helix isocitrate lyase regulation AYP_000341 SM00732 Likely ribonuclease with RNase H fold. AYP_000346 SM00967 RNA 2'-O ribose methyltransferase substrate binding AYP_000358 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_000379 SM00382 ATPases associated with a variety of cellular activities AYP_000382 SM01387 AYP_000382 AYP_000383 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_000383 SM00322 K homology RNA-binding domain AYP_000386 SM00271 DnaJ molecular chaperone homology domain AYP_000390 SM00487 DEAD-like helicases superfamily AYP_000390 SM00490 helicase superfamily c-terminal domain AYP_000396 SM00116 Domain in cystathionine beta-synthase and other proteins. AYP_000396 SM01091 Transporter associated domain AYP_000403 SM00849 Metallo-beta-lactamase superfamily AYP_000416 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_000422 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_000424 SM00363 S4 RNA-binding domain AYP_000432 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AYP_000442 SM01329 AYP_000442 AYP_000445 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_000446 SM00342 helix_turn_helix, arabinose operon control protein AYP_000448 SM00870 AYP_000448 AYP_000451 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYP_000457 SM00382 ATPases associated with a variety of cellular activities AYP_000459 SM00829 Enoylreductase AYP_000462 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AYP_000462 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AYP_000462 SM00493 AYP_000462 AYP_000466 SM00360 RNA recognition motif AYP_000494 SM00671 Sel1-like repeats. AYP_000497 SM00917 LeuA allosteric (dimerisation) domain AYP_000498 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AYP_000502 SM00382 ATPases associated with a variety of cellular activities AYP_000502 SM00994 ClpX C4-type zinc finger AYP_000502 SM01086 C-terminal, D2-small domain, of ClpB protein AYP_000517 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYP_000517 SM00245 tail specific protease AYP_000519 SM00014 Acid phosphatase homologues AYP_000521 SM00562 AYP_000521 AYP_000523 SM00028 Tetratricopeptide repeats AYP_000528 SM00564 beta-propeller repeat AYP_000531 SM00563 Phosphate acyltransferases AYP_000544 SM00825 Beta-ketoacyl synthase AYP_000546 SM00822 AYP_000546 AYP_000547 SM00825 Beta-ketoacyl synthase AYP_000552 SM00450 Rhodanese Homology Domain AYP_000554 SM00479 AYP_000554 AYP_000558 SM00382 ATPases associated with a variety of cellular activities AYP_000567 SM00052 Putative diguanylate phosphodiesterase AYP_000567 SM00267 diguanylate cyclase AYP_000570 SM01236 AYP_000570 AYP_000585 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AYP_000585 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AYP_000596 SM00073 Histidine Phosphotransfer domain AYP_000596 SM00387 Histidine kinase-like ATPases AYP_000596 SM00388 His Kinase A (phosphoacceptor) domain AYP_000596 SM00448 cheY-homologous receiver domain AYP_000600 SM00954 Region found in RelA / SpoT proteins AYP_000603 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYP_000612 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYP_000623 SM00873 B3/4 domain AYP_000623 SM00874 tRNA synthetase B5 domain AYP_000623 SM00896 Ferredoxin-fold anticodon binding domain AYP_000624 SM00411 bacterial (prokaryotic) histone like domain AYP_000626 SM00357 Cold shock protein domain AYP_000626 SM00382 ATPases associated with a variety of cellular activities AYP_000626 SM00959 Rho termination factor, N-terminal domain AYP_000630 SM00977 TilS substrate C-terminal domain AYP_000633 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYP_000633 SM00474 3'-5' exonuclease AYP_000633 SM00475 5'-3' exonuclease AYP_000633 SM00482 DNA polymerase A domain AYP_000637 SM00382 ATPases associated with a variety of cellular activities AYP_000639 SM00347 helix_turn_helix multiple antibiotic resistance protein AYP_000643 SM00331 Sigma factor PP2C-like phosphatases AYP_000701 SM00342 helix_turn_helix, arabinose operon control protein AYP_000707 SM00903 Flavin reductase like domain AYP_000715 SM00564 beta-propeller repeat AYP_000727 SM00387 Histidine kinase-like ATPases AYP_000732 SM00448 cheY-homologous receiver domain AYP_000732 SM00862 Transcriptional regulatory protein, C terminal AYP_000733 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYP_000733 SM00387 Histidine kinase-like ATPases AYP_000733 SM00388 His Kinase A (phosphoacceptor) domain AYP_000735 SM00267 diguanylate cyclase AYP_000740 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYP_000741 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYP_000741 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYP_000750 SM00357 Cold shock protein domain AYP_000778 SM00382 ATPases associated with a variety of cellular activities AYP_000778 SM00962 SRP54-type protein, GTPase domain AYP_000778 SM00963 SRP54-type protein, helical bundle domain AYP_000782 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_000784 SM00771 ZipA, C-terminal domain (FtsZ-binding) AYP_000785 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYP_000785 SM00292 breast cancer carboxy-terminal domain AYP_000785 SM00532 Ligase N family AYP_000795 SM00363 S4 RNA-binding domain AYP_000802 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYP_000803 SM00822 AYP_000803 AYP_000805 SM00257 Lysin motif AYP_000814 SM01400 AYP_000814 AYP_000821 SM00028 Tetratricopeptide repeats AYP_000823 SM00400 zinc finger AYP_000823 SM00493 AYP_000823 AYP_000825 SM00363 S4 RNA-binding domain AYP_000834 SM01329 AYP_000834 AYP_000846 SM00825 Beta-ketoacyl synthase AYP_000850 SM00838 Elongation factor G C-terminus AYP_000850 SM00889 Elongation factor G, domain IV AYP_000858 SM00843 AYP_000858 AYP_000867 SM00563 Phosphate acyltransferases AYP_000881 SM00382 ATPases associated with a variety of cellular activities AYP_000890 SM01004 Delta-aminolevulinic acid dehydratase AYP_000895 SM00382 ATPases associated with a variety of cellular activities AYP_000901 SM01130 AYP_000901 AYP_000921 SM01322 AYP_000921 AYP_000929 SM00346 helix_turn_helix isocitrate lyase regulation AYP_000933 SM00822 AYP_000933 AYP_000948 SM00342 helix_turn_helix, arabinose operon control protein AYP_000953 SM00822 AYP_000953 AYP_000956 SM00861 Transketolase, pyrimidine binding domain AYP_000957 SM01018 B12 binding domain AYP_000971 SM00947 Carbonic anhydrase AYP_000973 SM00382 ATPases associated with a variety of cellular activities AYP_000993 SM01091 Transporter associated domain AYP_001004 SM00988 UreE urease accessory protein, N-terminal domain AYP_001013 SM00478 endonuclease III AYP_001015 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYP_001021 SM00382 ATPases associated with a variety of cellular activities AYP_001021 SM00464 Found in ATP-dependent protease La (LON) AYP_001042 SM00530 Helix-turn-helix XRE-family like proteins AYP_001079 SM00287 Bacterial SH3 domain homologues AYP_001085 SM00530 Helix-turn-helix XRE-family like proteins AYP_001103 SM01011 Aminopeptidase P, N-terminal domain AYP_001108 SM00422 helix_turn_helix, mercury resistance AYP_001120 SM00479 AYP_001120 AYP_001121 SM00257 Lysin motif AYP_001125 SM00382 ATPases associated with a variety of cellular activities AYP_001129 SM00479 AYP_001129 AYP_001131 SM00267 diguanylate cyclase AYP_001149 SM00382 ATPases associated with a variety of cellular activities AYP_001158 SM00857 Resolvase, N terminal domain AYP_001162 SM00857 Resolvase, N terminal domain AYP_001197 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AYP_001198 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYP_001200 SM00788 Adenylosuccinate synthetase AYP_001206 SM00100 Cyclic nucleotide-monophosphate binding domain AYP_001206 SM00419 helix_turn_helix, cAMP Regulatory protein AYP_001210 SM00382 ATPases associated with a variety of cellular activities AYP_001210 SM01086 C-terminal, D2-small domain, of ClpB protein AYP_001213 SM00981 AYP_001213 AYP_001229 SM00382 ATPases associated with a variety of cellular activities AYP_001229 SM00487 DEAD-like helicases superfamily AYP_001229 SM00490 helicase superfamily c-terminal domain AYP_001229 SM00847 Helicase associated domain (HA2) Add an annotation AYP_001241 SM00422 helix_turn_helix, mercury resistance AYP_001250 SM00530 Helix-turn-helix XRE-family like proteins AYP_001254 SM00357 Cold shock protein domain AYP_001269 SM00487 DEAD-like helicases superfamily AYP_001270 SM00990 AYP_001270 AYP_001272 SM00482 DNA polymerase A domain AYP_001279 SM00530 Helix-turn-helix XRE-family like proteins AYP_001280 SM00530 Helix-turn-helix XRE-family like proteins AYP_001284 SM00885 D5 N terminal like AYP_001284 SM00943 Bifunctional DNA primase/polymerase, N-terminal AYP_001311 SM00840 AYP_001311 AYP_001312 SM00116 Domain in cystathionine beta-synthase and other proteins. AYP_001316 SM00382 ATPases associated with a variety of cellular activities AYP_001318 SM00382 ATPases associated with a variety of cellular activities AYP_001327 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AYP_001327 SM00534 ATPase domain of DNA mismatch repair MUTS family AYP_001332 SM00052 Putative diguanylate phosphodiesterase AYP_001337 SM00422 helix_turn_helix, mercury resistance AYP_001352 SM00796 Allophanate hydrolase subunit 1 AYP_001352 SM00797 Allophanate hydrolase subunit 2 AYP_001353 SM00878 Biotin carboxylase C-terminal domain AYP_001355 SM00671 Sel1-like repeats. AYP_001359 SM00829 Enoylreductase AYP_001362 SM00796 Allophanate hydrolase subunit 1 AYP_001362 SM00797 Allophanate hydrolase subunit 2 AYP_001362 SM00878 Biotin carboxylase C-terminal domain AYP_001371 SM00382 ATPases associated with a variety of cellular activities AYP_001386 SM00382 ATPases associated with a variety of cellular activities AYP_001386 SM01086 C-terminal, D2-small domain, of ClpB protein AYP_001393 SM00248 ankyrin repeats AYP_001402 SM00422 helix_turn_helix, mercury resistance AYP_001404 SM01130 AYP_001404 AYP_001406 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001406 SM00895 AYP_001406 AYP_001411 SM00342 helix_turn_helix, arabinose operon control protein AYP_001436 SM01060 AYP_001436 AYP_001439 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001439 SM00895 AYP_001439 AYP_001442 SM00903 Flavin reductase like domain AYP_001452 SM00346 helix_turn_helix isocitrate lyase regulation AYP_001454 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001454 SM00866 AYP_001454 AYP_001456 SM00382 ATPases associated with a variety of cellular activities AYP_001467 SM00346 helix_turn_helix isocitrate lyase regulation AYP_001471 SM00346 helix_turn_helix isocitrate lyase regulation AYP_001478 SM00882 Coenzyme A transferase AYP_001479 SM00882 Coenzyme A transferase AYP_001488 SM00878 Biotin carboxylase C-terminal domain AYP_001505 SM01236 AYP_001505 AYP_001506 SM01060 AYP_001506 AYP_001509 SM00384 DNA binding domain with preference for A/T rich regions AYP_001513 SM00344 helix_turn_helix ASNC type AYP_001516 SM00387 Histidine kinase-like ATPases AYP_001516 SM00388 His Kinase A (phosphoacceptor) domain AYP_001516 SM00448 cheY-homologous receiver domain AYP_001517 SM00421 helix_turn_helix, Lux Regulon AYP_001517 SM00448 cheY-homologous receiver domain AYP_001521 SM00382 ATPases associated with a variety of cellular activities AYP_001522 SM00062 Bacterial periplasmic substrate-binding proteins AYP_001523 SM00062 Bacterial periplasmic substrate-binding proteins AYP_001530 SM00450 Rhodanese Homology Domain AYP_001531 SM00822 AYP_001531 AYP_001538 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001549 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AYP_001553 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001563 SM00062 Bacterial periplasmic substrate-binding proteins AYP_001564 SM00382 ATPases associated with a variety of cellular activities AYP_001569 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001569 SM00895 AYP_001569 AYP_001575 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYP_001586 SM00481 DNA polymerase alpha chain like domain AYP_001587 SM00870 AYP_001587 AYP_001592 SM00342 helix_turn_helix, arabinose operon control protein AYP_001595 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYP_001602 SM00100 Cyclic nucleotide-monophosphate binding domain AYP_001602 SM00419 helix_turn_helix, cAMP Regulatory protein AYP_001606 SM00382 ATPases associated with a variety of cellular activities AYP_001606 SM00930 AYP_001606 AYP_001613 SM00062 Bacterial periplasmic substrate-binding proteins AYP_001616 SM00382 ATPases associated with a variety of cellular activities AYP_001618 SM00344 helix_turn_helix ASNC type AYP_001620 SM00563 Phosphate acyltransferases AYP_001622 SM01236 AYP_001622 AYP_001639 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_001639 SM00876 Biotin and Thiamin Synthesis associated domain AYP_001644 SM00530 Helix-turn-helix XRE-family like proteins AYP_001651 SM00861 Transketolase, pyrimidine binding domain AYP_001653 SM00867 YceI-like domain AYP_001661 SM00344 helix_turn_helix ASNC type AYP_001665 SM00342 helix_turn_helix, arabinose operon control protein AYP_001667 SM00382 ATPases associated with a variety of cellular activities AYP_001671 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYP_001673 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AYP_001685 SM00470 ParB-like nuclease domain AYP_001688 SM00382 ATPases associated with a variety of cellular activities AYP_001700 SM00986 Uracil DNA glycosylase superfamily AYP_001700 SM00987 UreE urease accessory protein, C-terminal domain AYP_001705 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_001706 SM00411 bacterial (prokaryotic) histone like domain AYP_001708 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AYP_001711 SM00342 helix_turn_helix, arabinose operon control protein AYP_001725 SM00382 ATPases associated with a variety of cellular activities AYP_001738 SM00487 DEAD-like helicases superfamily AYP_001738 SM00490 helicase superfamily c-terminal domain AYP_001738 SM00982 AYP_001738 AYP_001738 SM01058 CarD-like/TRCF domain AYP_001740 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AYP_001743 SM00271 DnaJ molecular chaperone homology domain AYP_001750 SM00411 bacterial (prokaryotic) histone like domain AYP_001752 SM00342 helix_turn_helix, arabinose operon control protein AYP_001770 SM01006 Siderophore biosynthesis protein domain AYP_001776 SM00855 Phosphoglycerate mutase family AYP_001788 SM00382 ATPases associated with a variety of cellular activities AYP_001796 SM01324 AYP_001796 AYP_001807 SM00493 AYP_001807 AYP_001808 SM00341 Helicase and RNase D C-terminal AYP_001808 SM00474 3'-5' exonuclease AYP_001816 SM00382 ATPases associated with a variety of cellular activities AYP_001821 SM00267 diguanylate cyclase AYP_001826 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_001828 SM00861 Transketolase, pyrimidine binding domain AYP_001832 SM00829 Enoylreductase AYP_001834 SM00382 ATPases associated with a variety of cellular activities AYP_001835 SM00849 Metallo-beta-lactamase superfamily AYP_001840 SM00342 helix_turn_helix, arabinose operon control protein AYP_001844 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_001844 SM00866 AYP_001844 AYP_001849 SM00382 ATPases associated with a variety of cellular activities AYP_001850 SM00567 E-Z type HEAT repeats AYP_001861 SM00882 Coenzyme A transferase AYP_001862 SM00882 Coenzyme A transferase AYP_001869 SM00342 helix_turn_helix, arabinose operon control protein AYP_001874 SM00903 Flavin reductase like domain AYP_001876 SM00342 helix_turn_helix, arabinose operon control protein AYP_001883 SM00382 ATPases associated with a variety of cellular activities AYP_001892 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_001897 SM00155 Phospholipase D. Active site motifs. AYP_001902 SM00829 Enoylreductase AYP_001921 SM00448 cheY-homologous receiver domain AYP_001921 SM00862 Transcriptional regulatory protein, C terminal AYP_001922 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYP_001922 SM00387 Histidine kinase-like ATPases AYP_001922 SM00388 His Kinase A (phosphoacceptor) domain AYP_001924 SM00342 helix_turn_helix, arabinose operon control protein AYP_001926 SM00822 AYP_001926 AYP_001927 SM00822 AYP_001927 AYP_001934 SM00530 Helix-turn-helix XRE-family like proteins AYP_001947 SM00421 helix_turn_helix, Lux Regulon AYP_001964 SM01400 AYP_001964 AYP_001966 SM00342 helix_turn_helix, arabinose operon control protein AYP_001971 SM00382 ATPases associated with a variety of cellular activities AYP_001975 SM00829 Enoylreductase AYP_001978 SM00342 helix_turn_helix, arabinose operon control protein AYP_001995 SM00346 helix_turn_helix isocitrate lyase regulation AYP_002001 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_002001 SM00866 AYP_002001 AYP_002008 SM00912 haemagglutination activity domain AYP_002024 SM00422 helix_turn_helix, mercury resistance AYP_002028 SM00347 helix_turn_helix multiple antibiotic resistance protein AYP_002033 SM01060 AYP_002033 AYP_002037 SM00829 Enoylreductase AYP_002041 SM00091 PAS domain AYP_002041 SM00382 ATPases associated with a variety of cellular activities AYP_002044 SM00855 Phosphoglycerate mutase family AYP_002051 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_002051 SM00895 AYP_002051 AYP_002054 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AYP_002057 SM00882 Coenzyme A transferase AYP_002058 SM00882 Coenzyme A transferase AYP_002065 SM00342 helix_turn_helix, arabinose operon control protein AYP_002066 SM00903 Flavin reductase like domain AYP_002075 SM00347 helix_turn_helix multiple antibiotic resistance protein AYP_002079 SM00855 Phosphoglycerate mutase family AYP_002083 SM00346 helix_turn_helix isocitrate lyase regulation AYP_002084 SM00849 Metallo-beta-lactamase superfamily AYP_002088 SM00564 beta-propeller repeat AYP_002090 SM00710 Parallel beta-helix repeats AYP_002097 SM00998 Adenylosuccinate lyase C-terminus AYP_002099 SM00882 Coenzyme A transferase AYP_002100 SM00882 Coenzyme A transferase AYP_002104 SM01192 AYP_002104 AYP_002104 SM01193 AYP_002104 AYP_002117 SM00382 ATPases associated with a variety of cellular activities AYP_002117 SM01086 C-terminal, D2-small domain, of ClpB protein AYP_002120 SM00859 Semialdehyde dehydrogenase, NAD binding domain AYP_002129 SM01264 AYP_002129 AYP_002142 SM00382 ATPases associated with a variety of cellular activities AYP_002142 SM00962 SRP54-type protein, GTPase domain AYP_002142 SM00963 SRP54-type protein, helical bundle domain AYP_002147 SM00116 Domain in cystathionine beta-synthase and other proteins. AYP_002162 SM00347 helix_turn_helix multiple antibiotic resistance protein AYP_002164 SM00052 Putative diguanylate phosphodiesterase AYP_002164 SM00091 PAS domain AYP_002164 SM00267 diguanylate cyclase AYP_002173 SM00344 helix_turn_helix ASNC type AYP_002179 SM00363 S4 RNA-binding domain AYP_002180 SM00382 ATPases associated with a variety of cellular activities AYP_002187 SM00935 Outer membrane protein (OmpH-like) AYP_002189 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYP_002195 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_002197 SM00091 PAS domain AYP_002197 SM00387 Histidine kinase-like ATPases AYP_002197 SM00388 His Kinase A (phosphoacceptor) domain AYP_002198 SM00382 ATPases associated with a variety of cellular activities AYP_002198 SM00448 cheY-homologous receiver domain AYP_002216 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_002218 SM00852 Probable molybdopterin binding domain AYP_002219 SM00852 Probable molybdopterin binding domain AYP_002222 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_002223 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYP_002225 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AYP_002228 SM00448 cheY-homologous receiver domain AYP_002228 SM01012 AYP_002228 AYP_002233 SM00878 Biotin carboxylase C-terminal domain AYP_002298 SM01236 AYP_002298 AYP_002306 SM00226 Low molecular weight phosphatase family AYP_002312 SM00382 ATPases associated with a variety of cellular activities AYP_002317 SM00822 AYP_002317 AYP_002323 SM00344 helix_turn_helix ASNC type AYP_002326 SM00831 Cation transporter/ATPase, N-terminus AYP_002331 SM00382 ATPases associated with a variety of cellular activities AYP_002347 SM00344 helix_turn_helix ASNC type AYP_002348 SM00830 Chorismate mutase type II AYP_002356 SM00342 helix_turn_helix, arabinose operon control protein AYP_002356 SM00871 Bacterial transcription activator, effector binding domain AYP_002358 SM00382 ATPases associated with a variety of cellular activities AYP_002361 SM00862 Transcriptional regulatory protein, C terminal AYP_002376 SM00853 MutL C terminal dimerisation domain AYP_002376 SM01340 AYP_002376 AYP_002381 SM00363 S4 RNA-binding domain AYP_002397 SM01230 AYP_002397 AYP_002398 SM00448 cheY-homologous receiver domain AYP_002398 SM00862 Transcriptional regulatory protein, C terminal AYP_002399 SM00387 Histidine kinase-like ATPases AYP_002399 SM00388 His Kinase A (phosphoacceptor) domain AYP_002404 SM00905 Dihydroneopterin aldolase AYP_002407 SM00903 Flavin reductase like domain AYP_002410 SM00822 AYP_002410 AYP_002411 SM00342 helix_turn_helix, arabinose operon control protein AYP_002412 SM00062 Bacterial periplasmic substrate-binding proteins AYP_002415 SM00937 AYP_002415 AYP_002438 SM01005 Alanine racemase, C-terminal domain AYP_002440 SM00460 Transglutaminase/protease-like homologues AYP_002445 SM01228 AYP_002445 AYP_002450 SM00798 AICARFT/IMPCHase bienzyme AYP_002450 SM00851 MGS-like domain AYP_002451 SM01209 AYP_002451 AYP_002451 SM01210 AYP_002451 AYP_002453 SM00382 ATPases associated with a variety of cellular activities AYP_002453 SM00930 AYP_002453 AYP_002455 SM00849 Metallo-beta-lactamase superfamily AYP_002474 SM00972 Spore Coat Protein U domain AYP_002479 SM00972 Spore Coat Protein U domain AYP_002482 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_002482 SM00895 AYP_002482 AYP_002486 SM00342 helix_turn_helix, arabinose operon control protein AYP_002491 SM01034 Sensors of blue-light using FAD AYP_002520 SM00855 Phosphoglycerate mutase family AYP_002524 SM00487 DEAD-like helicases superfamily AYP_002524 SM00490 helicase superfamily c-terminal domain AYP_002525 SM00357 Cold shock protein domain AYP_002538 SM00830 Chorismate mutase type II AYP_002549 SM00387 Histidine kinase-like ATPases AYP_002549 SM00388 His Kinase A (phosphoacceptor) domain AYP_002550 SM00448 cheY-homologous receiver domain AYP_002550 SM00862 Transcriptional regulatory protein, C terminal AYP_002552 SM00382 ATPases associated with a variety of cellular activities AYP_002557 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_002561 SM00382 ATPases associated with a variety of cellular activities AYP_002564 SM00062 Bacterial periplasmic substrate-binding proteins AYP_002572 SM00479 AYP_002572 AYP_002575 SM00382 ATPases associated with a variety of cellular activities AYP_002585 SM00342 helix_turn_helix, arabinose operon control protein AYP_002595 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_002599 SM00996 S-adenosyl-L-homocysteine hydrolase AYP_002599 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYP_002602 SM00052 Putative diguanylate phosphodiesterase AYP_002602 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AYP_002602 SM00091 PAS domain AYP_002602 SM00267 diguanylate cyclase AYP_002603 SM00919 Malic enzyme, NAD binding domain AYP_002603 SM01274 AYP_002603 AYP_002605 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYP_002616 SM01230 AYP_002616 AYP_002627 SM00463 Small MutS-related domain AYP_002632 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYP_002633 SM01092 CO dehydrogenase flavoprotein C-terminal domain AYP_002646 SM00382 ATPases associated with a variety of cellular activities AYP_002647 SM00382 ATPases associated with a variety of cellular activities AYP_002656 SM00382 ATPases associated with a variety of cellular activities AYP_002670 SM00829 Enoylreductase AYP_002671 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AYP_002698 SM00841 Elongation factor P, C-terminal AYP_002698 SM01185 AYP_002698 AYP_002701 SM00052 Putative diguanylate phosphodiesterase AYP_002708 SM00257 Lysin motif AYP_002712 SM00936 Penicillin-binding protein 5, C-terminal domain AYP_002721 SM00382 ATPases associated with a variety of cellular activities AYP_002727 SM00344 helix_turn_helix ASNC type AYP_002738 SM00487 DEAD-like helicases superfamily AYP_002738 SM00490 helicase superfamily c-terminal domain AYP_002744 SM00880 AYP_002744 AYP_002744 SM01118 AYP_002744 AYP_002754 SM01329 AYP_002754 AYP_002785 SM00232 JAB/MPN domain AYP_002821 SM00507 HNH nucleases AYP_002833 SM00479 AYP_002833 AYP_002842 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AYP_002847 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYP_002850 SM00487 DEAD-like helicases superfamily AYP_002850 SM00490 helicase superfamily c-terminal domain AYP_002852 SM00267 diguanylate cyclase AYP_002865 SM00358 Double-stranded RNA binding motif AYP_002868 SM00838 Elongation factor G C-terminus AYP_002870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AYP_002881 SM00382 ATPases associated with a variety of cellular activities AYP_002897 SM01211 AYP_002897 AYP_002898 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYP_002899 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AYP_002900 SM00382 ATPases associated with a variety of cellular activities AYP_002923 SM00849 Metallo-beta-lactamase superfamily AYP_002924 SM00382 ATPases associated with a variety of cellular activities AYP_002940 SM00434 DNA Topoisomerase IV AYP_002941 SM00893 Electron transfer flavoprotein domain AYP_002942 SM00893 Electron transfer flavoprotein domain AYP_002950 SM00382 ATPases associated with a variety of cellular activities AYP_002951 SM00978 AYP_002951 AYP_002977 SM00849 Metallo-beta-lactamase superfamily AYP_002980 SM00883 Chaperonin 10 Kd subunit AYP_002983 SM00046 Diacylglycerol kinase catalytic domain (presumed) AYP_002998 SM00382 ATPases associated with a variety of cellular activities AYP_003000 SM01103 AYP_003000 AYP_003003 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AYP_003004 SM00851 MGS-like domain AYP_003004 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYP_003010 SM00854 Bacterial capsule synthesis protein PGA_cap AYP_003018 SM00881 CoA binding domain AYP_003022 SM00861 Transketolase, pyrimidine binding domain AYP_003030 SM00450 Rhodanese Homology Domain AYP_003053 SM00014 Acid phosphatase homologues AYP_003060 SM00822 AYP_003060 AYP_003069 SM00387 Histidine kinase-like ATPases AYP_003069 SM00388 His Kinase A (phosphoacceptor) domain AYP_003070 SM00448 cheY-homologous receiver domain AYP_003070 SM00862 Transcriptional regulatory protein, C terminal AYP_003074 SM00563 Phosphate acyltransferases AYP_003077 SM00244 prohibitin homologues AYP_003085 SM00829 Enoylreductase AYP_003086 SM00342 helix_turn_helix, arabinose operon control protein AYP_003090 SM00342 helix_turn_helix, arabinose operon control protein AYP_003099 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_003106 SM00845 GatB domain AYP_003136 SM00073 Histidine Phosphotransfer domain AYP_003136 SM00260 Two component signalling adaptor domain AYP_003136 SM00387 Histidine kinase-like ATPases AYP_003136 SM00448 cheY-homologous receiver domain AYP_003136 SM01231 AYP_003136 AYP_003137 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AYP_003138 SM00260 Two component signalling adaptor domain AYP_003139 SM00448 cheY-homologous receiver domain AYP_003140 SM00448 cheY-homologous receiver domain AYP_003154 SM00671 Sel1-like repeats. AYP_003159 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AYP_003159 SM01232 AYP_003159 AYP_003164 SM00838 Elongation factor G C-terminus AYP_003179 SM00564 beta-propeller repeat AYP_003183 SM00342 helix_turn_helix, arabinose operon control protein AYP_003194 SM00957 SecA DEAD-like domain AYP_003194 SM00958 SecA preprotein cross-linking domain AYP_003196 SM00849 Metallo-beta-lactamase superfamily AYP_003203 SM00342 helix_turn_helix, arabinose operon control protein AYP_003215 SM00448 cheY-homologous receiver domain AYP_003215 SM00862 Transcriptional regulatory protein, C terminal AYP_003216 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYP_003216 SM00387 Histidine kinase-like ATPases AYP_003216 SM00388 His Kinase A (phosphoacceptor) domain AYP_003242 SM00387 Histidine kinase-like ATPases AYP_003242 SM00388 His Kinase A (phosphoacceptor) domain AYP_003251 SM01323 AYP_003251 AYP_003258 SM00481 DNA polymerase alpha chain like domain AYP_003263 SM00450 Rhodanese Homology Domain AYP_003278 SM00267 diguanylate cyclase AYP_003281 SM00155 Phospholipase D. Active site motifs. AYP_003282 SM00563 Phosphate acyltransferases AYP_003294 SM01040 BRO family, N-terminal domain AYP_003312 SM00287 Bacterial SH3 domain homologues AYP_003361 SM00650 Ribosomal RNA adenine dimethylases AYP_003368 SM00878 Biotin carboxylase C-terminal domain AYP_003386 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AYP_003394 SM00729 Elongator protein 3, MiaB family, Radical SAM AYP_003404 SM00342 helix_turn_helix, arabinose operon control protein AYP_003414 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_003414 SM00955 AYP_003414 AYP_003426 SM00662 RNA polymerases D AYP_003427 SM00363 S4 RNA-binding domain AYP_003427 SM01390 AYP_003427 AYP_003440 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AYP_003441 SM01374 AYP_003441 AYP_003445 SM00322 K homology RNA-binding domain AYP_003448 SM01382 AYP_003448 AYP_003448 SM01383 AYP_003448 AYP_003452 SM01403 AYP_003452 AYP_003462 SM00563 Phosphate acyltransferases AYP_003465 SM00487 DEAD-like helicases superfamily AYP_003465 SM00490 helicase superfamily c-terminal domain AYP_003474 SM00382 ATPases associated with a variety of cellular activities AYP_003476 SM00487 DEAD-like helicases superfamily AYP_003476 SM00490 helicase superfamily c-terminal domain AYP_003478 SM00861 Transketolase, pyrimidine binding domain AYP_003486 SM00116 Domain in cystathionine beta-synthase and other proteins. AYP_003506 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYP_003544 SM00072 Guanylate kinase homologues. AYP_003545 SM01409 AYP_003545 AYP_003546 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AYP_003546 SM00954 Region found in RelA / SpoT proteins AYP_003563 SM00965 Secretin and TonB N terminus short domain AYP_003567 SM00842 Cell division protein FtsA AYP_003598 SM00671 Sel1-like repeats. AYP_003599 SM00382 ATPases associated with a variety of cellular activities AYP_003602 SM00947 Carbonic anhydrase AYP_003603 SM00316 Ribosomal protein S1-like RNA-binding domain AYP_003603 SM00732 Likely ribonuclease with RNase H fold. AYP_003604 SM00448 cheY-homologous receiver domain AYP_003604 SM00862 Transcriptional regulatory protein, C terminal AYP_003605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AYP_003605 SM00387 Histidine kinase-like ATPases AYP_003605 SM00388 His Kinase A (phosphoacceptor) domain AYP_003614 SM00474 3'-5' exonuclease AYP_003616 SM00530 Helix-turn-helix XRE-family like proteins AYP_003620 SM00357 Cold shock protein domain AYP_003624 SM00342 helix_turn_helix, arabinose operon control protein AYP_003629 SM00477 DNA/RNA non-specific endonuclease AYP_003629 SM00892 DNA/RNA non-specific endonuclease AYP_003640 SM00671 Sel1-like repeats. AYP_003642 SM00342 helix_turn_helix, arabinose operon control protein AYP_003658 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_003660 SM00530 Helix-turn-helix XRE-family like proteins AYP_003669 SM00829 Enoylreductase AYP_003673 SM00267 diguanylate cyclase AYP_003679 SM00387 Histidine kinase-like ATPases AYP_003679 SM00388 His Kinase A (phosphoacceptor) domain AYP_003679 SM00448 cheY-homologous receiver domain AYP_003681 SM00421 helix_turn_helix, Lux Regulon AYP_003681 SM00448 cheY-homologous receiver domain AYP_003685 SM00344 helix_turn_helix ASNC type AYP_003693 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AYP_003695 SM00937 AYP_003695 AYP_003700 SM00116 Domain in cystathionine beta-synthase and other proteins. AYP_003700 SM01240 AYP_003700 AYP_003702 SM00849 Metallo-beta-lactamase superfamily AYP_003711 SM00864 Tubulin/FtsZ family, GTPase domain AYP_003711 SM00865 Tubulin/FtsZ family, C-terminal domain AYP_003712 SM00842 Cell division protein FtsA AYP_003725 SM00267 diguanylate cyclase AYP_003740 SM00387 Histidine kinase-like ATPases AYP_003740 SM00433 TopoisomeraseII AYP_003744 SM00257 Lysin motif AYP_003755 SM00448 cheY-homologous receiver domain AYP_003755 SM00862 Transcriptional regulatory protein, C terminal AYP_003756 SM00387 Histidine kinase-like ATPases AYP_003756 SM00388 His Kinase A (phosphoacceptor) domain AYP_003762 SM00450 Rhodanese Homology Domain AYP_003786 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_003786 SM00866 AYP_003786 AYP_003788 SM00833 Cobalamin synthesis protein cobW C-terminal domain AYP_003794 SM00346 helix_turn_helix isocitrate lyase regulation AYP_003800 SM01130 AYP_003800 AYP_003805 SM00382 ATPases associated with a variety of cellular activities AYP_003811 SM00478 endonuclease III AYP_003811 SM00525 AYP_003811 AYP_003815 SM00829 Enoylreductase AYP_003816 SM00345 helix_turn_helix gluconate operon transcriptional repressor AYP_003825 SM00271 DnaJ molecular chaperone homology domain AYP_003851 SM00849 Metallo-beta-lactamase superfamily AYP_003855 SM00235 Zinc-dependent metalloprotease AYP_003856 SM00235 Zinc-dependent metalloprotease AYP_003860 SM01001 AIR carboxylase AYP_003865 SM00014 Acid phosphatase homologues AYP_003879 SM01234 AYP_003879 AYP_003894 SM00382 ATPases associated with a variety of cellular activities AYP_003895 SM00470 ParB-like nuclease domain AYP_003897 SM00470 ParB-like nuclease domain AYP_003898 SM00487 DEAD-like helicases superfamily AYP_003898 SM00490 helicase superfamily c-terminal domain AYP_003901 SM00257 Lysin motif AYP_003913 SM00829 Enoylreductase AYP_003918 SM00829 Enoylreductase AYP_003933 SM00479 AYP_003933 AYP_003951 SM00305 Hint (Hedgehog/Intein) domain C-terminal region AYP_003952 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AYP_003952 SM00475 5'-3' exonuclease AYP_003957 SM00481 DNA polymerase alpha chain like domain AYP_003963 SM00530 Helix-turn-helix XRE-family like proteins AYP_003970 SM00072 Guanylate kinase homologues. AYP_003988 SM00232 JAB/MPN domain