locus-tag class description HIN88_00005 PF11638 DnaA N-terminal domain HIN88_00005 PF08299 Bacterial dnaA protein helix-turn-helix HIN88_00005 PF00308 Bacterial dnaA protein HIN88_00010 PF02767 DNA polymerase III beta subunit, central domain HIN88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HIN88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HIN88_00015 PF02463 RecF/RecN/SMC N terminal domain HIN88_00020 PF18053 DNA gyrase B subunit insert domain HIN88_00020 PF00986 DNA gyrase B subunit, carboxyl terminus HIN88_00020 PF00204 DNA gyrase B HIN88_00020 PF01751 Toprim domain HIN88_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_00030 PF09335 SNARE associated Golgi protein HIN88_00035 PF00005 ABC transporter HIN88_00035 PF12848 ABC transporter HIN88_00055 PF01521 Iron-sulphur cluster biosynthesis HIN88_00060 PF00561 alpha/beta hydrolase fold HIN88_00065 PF03702 Anhydro-N-acetylmuramic acid kinase HIN88_00070 PF00579 tRNA synthetases class I (W and Y) HIN88_00110 PF00209 Sodium:neurotransmitter symporter family HIN88_00120 PF01189 16S rRNA methyltransferase RsmB/F HIN88_00120 PF01029 NusB family HIN88_00125 PF00551 Formyl transferase HIN88_00125 PF02911 Formyl transferase, C-terminal domain HIN88_00130 PF00920 Dehydratase family HIN88_00145 PF03466 LysR substrate binding domain HIN88_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_00150 PF00860 Permease family HIN88_00155 PF00311 Phosphoenolpyruvate carboxylase HIN88_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region HIN88_00160 PF00440 Bacterial regulatory proteins, tetR family HIN88_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_00170 PF00873 AcrB/AcrD/AcrF family HIN88_00180 PF00684 DnaJ central domain HIN88_00180 PF00226 DnaJ domain HIN88_00180 PF01556 DnaJ C terminal domain HIN88_00190 PF01113 Dihydrodipicolinate reductase, N-terminus HIN88_00190 PF05173 Dihydrodipicolinate reductase, C-terminus HIN88_00200 PF07690 Major Facilitator Superfamily HIN88_00205 PF00248 Aldo/keto reductase family HIN88_00210 PF03466 LysR substrate binding domain HIN88_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_00225 PF00155 Aminotransferase class I and II HIN88_00225 PF00392 Bacterial regulatory proteins, gntR family HIN88_00230 PF00107 Zinc-binding dehydrogenase HIN88_00230 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_00235 PF03352 Methyladenine glycosylase HIN88_00250 PF14815 NUDIX domain HIN88_00250 PF10576 Iron-sulfur binding domain of endonuclease III HIN88_00250 PF00633 Helix-hairpin-helix motif HIN88_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein HIN88_00265 PF07043 Protein of unknown function (DUF1328) HIN88_00270 PF03692 Putative zinc- or iron-chelating domain HIN88_00275 PF07995 Glucose / Sorbosone dehydrogenase HIN88_00280 PF16193 AAA C-terminal domain HIN88_00280 PF12002 MgsA AAA+ ATPase C terminal HIN88_00280 PF00004 ATPase family associated with various cellular activities (AAA) HIN88_00285 PF01226 Formate/nitrite transporter HIN88_00295 PF01259 SAICAR synthetase HIN88_00305 PF00701 Dihydrodipicolinate synthetase family HIN88_00310 PF00857 Isochorismatase family HIN88_00315 PF01758 Sodium Bile acid symporter family HIN88_00320 PF04463 Protein of unknown function (DUF523) HIN88_00325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HIN88_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HIN88_00340 PF14497 Glutathione S-transferase, C-terminal domain HIN88_00340 PF02798 Glutathione S-transferase, N-terminal domain HIN88_00350 PF00324 Amino acid permease HIN88_00360 PF07683 Cobalamin synthesis protein cobW C-terminal domain HIN88_00360 PF02492 CobW/HypB/UreG, nucleotide-binding domain HIN88_00370 PF07702 UTRA domain HIN88_00370 PF00392 Bacterial regulatory proteins, gntR family HIN88_00375 PF05962 HutD HIN88_00380 PF17391 Urocanase N-terminal domain HIN88_00380 PF17392 Urocanase C-terminal domain HIN88_00380 PF01175 Urocanase Rossmann-like domain HIN88_00385 PF00221 Aromatic amino acid lyase HIN88_00390 PF00324 Amino acid permease HIN88_00395 PF01979 Amidohydrolase family HIN88_00400 PF00491 Arginase family HIN88_00415 PF01177 Asp/Glu/Hydantoin racemase HIN88_00430 PF01380 SIS domain HIN88_00435 PF14602 Hexapeptide repeat of succinyl-transferase HIN88_00435 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_00435 PF12804 MobA-like NTP transferase domain HIN88_00440 PF04608 Phosphatidylglycerophosphatase A HIN88_00445 PF00586 AIR synthase related protein, N-terminal domain HIN88_00445 PF02769 AIR synthase related protein, C-terminal domain HIN88_00450 PF01029 NusB family HIN88_00455 PF00885 6,7-dimethyl-8-ribityllumazine synthase HIN88_00460 PF00925 GTP cyclohydrolase II HIN88_00460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HIN88_00485 PF02580 D-Tyr-tRNA(Tyr) deacylase HIN88_00490 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HIN88_00490 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HIN88_00495 PF00581 Rhodanese-like domain HIN88_00500 PF02666 Phosphatidylserine decarboxylase HIN88_00505 PF03069 Acetamidase/Formamidase family HIN88_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_00520 PF11808 Phosphate regulon sensor protein PhoR HIN88_00520 PF00989 PAS fold HIN88_00520 PF00512 His Kinase A (phospho-acceptor) domain HIN88_00525 PF00486 Transcriptional regulatory protein, C terminal HIN88_00525 PF00072 Response regulator receiver domain HIN88_00535 PF00106 short chain dehydrogenase HIN88_00540 PF01554 MatE HIN88_00545 PF00155 Aminotransferase class I and II HIN88_00550 PF04286 Protein of unknown function (DUF445) HIN88_00565 PF04262 Glutamate-cysteine ligase HIN88_00570 PF02600 Disulfide bond formation protein DsbB HIN88_00575 PF04717 Type VI secretion system, phage-baseplate injector HIN88_00625 PF05728 Uncharacterised protein family (UPF0227) HIN88_00630 PF01751 Toprim domain HIN88_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_00630 PF00204 DNA gyrase B HIN88_00630 PF00986 DNA gyrase B subunit, carboxyl terminus HIN88_00635 PF04115 Ureidoglycolate lyase HIN88_00640 PF03561 Allantoicase repeat HIN88_00645 PF01494 FAD binding domain HIN88_00655 PF00860 Permease family HIN88_00660 PF00576 HIUase/Transthyretin family HIN88_00690 PF02683 Cytochrome C biogenesis protein transmembrane region HIN88_00690 PF11412 Disulphide bond corrector protein DsbC HIN88_00700 PF07859 alpha/beta hydrolase fold HIN88_00710 PF03960 ArsC family HIN88_00715 PF03372 Endonuclease/Exonuclease/phosphatase family HIN88_00720 PF00156 Phosphoribosyl transferase domain HIN88_00725 PF00593 TonB dependent receptor HIN88_00725 PF07715 TonB-dependent Receptor Plug Domain HIN88_00735 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HIN88_00735 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HIN88_00740 PF03033 Glycosyltransferase family 28 N-terminal domain HIN88_00740 PF04101 Glycosyltransferase family 28 C-terminal domain HIN88_00745 PF02875 Mur ligase family, glutamate ligase domain HIN88_00745 PF08245 Mur ligase middle domain HIN88_00745 PF01225 Mur ligase family, catalytic domain HIN88_00750 PF07478 D-ala D-ala ligase C-terminus HIN88_00750 PF01820 D-ala D-ala ligase N-terminus HIN88_00755 PF08478 POTRA domain, FtsQ-type HIN88_00755 PF03799 Cell division protein FtsQ HIN88_00760 PF02491 SHS2 domain inserted in FTSA HIN88_00765 PF00091 Tubulin/FtsZ family, GTPase domain HIN88_00765 PF12327 FtsZ family, C-terminal domain HIN88_00770 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HIN88_00780 PF01551 Peptidase family M23 HIN88_00785 PF17831 Pyruvate dehydrogenase E1 component middle domain HIN88_00785 PF00456 Transketolase, thiamine diphosphate binding domain HIN88_00790 PF02817 e3 binding domain HIN88_00790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HIN88_00790 PF00364 Biotin-requiring enzyme HIN88_00800 PF01169 Uncharacterized protein family UPF0016 HIN88_00805 PF00593 TonB dependent receptor HIN88_00805 PF07715 TonB-dependent Receptor Plug Domain HIN88_00810 PF01613 Flavin reductase like domain HIN88_00810 PF00258 Flavodoxin HIN88_00815 PF03692 Putative zinc- or iron-chelating domain HIN88_00820 PF00478 IMP dehydrogenase / GMP reductase domain HIN88_00820 PF00571 CBS domain HIN88_00825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HIN88_00825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HIN88_00825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HIN88_00825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HIN88_00830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HIN88_00830 PF01243 Pyridoxamine 5'-phosphate oxidase HIN88_00835 PF01368 DHH family HIN88_00835 PF17768 RecJ OB domain HIN88_00835 PF02272 DHHA1 domain HIN88_00855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HIN88_00860 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HIN88_00865 PF04452 RNA methyltransferase HIN88_00870 PF00924 Mechanosensitive ion channel HIN88_00880 PF00501 AMP-binding enzyme HIN88_00880 PF13193 AMP-binding enzyme C-terminal domain HIN88_00880 PF16177 Acetyl-coenzyme A synthetase N-terminus HIN88_00885 PF00857 Isochorismatase family HIN88_00890 PF01037 Lrp/AsnC ligand binding domain HIN88_00895 PF00296 Luciferase-like monooxygenase HIN88_00900 PF03358 NADPH-dependent FMN reductase HIN88_00905 PF00196 Bacterial regulatory proteins, luxR family HIN88_00905 PF00072 Response regulator receiver domain HIN88_00915 PF00072 Response regulator receiver domain HIN88_00915 PF01627 Hpt domain HIN88_00915 PF00512 His Kinase A (phospho-acceptor) domain HIN88_00915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_00915 PF00672 HAMP domain HIN88_00920 PF04341 Protein of unknown function, DUF485 HIN88_00925 PF00474 Sodium:solute symporter family HIN88_00935 PF02028 BCCT, betaine/carnitine/choline family transporter HIN88_00945 PF00990 Diguanylate cyclase, GGDEF domain HIN88_00945 PF17158 Membrane-associated sensor, integral membrane domain HIN88_00950 PF17755 UvrA DNA-binding domain HIN88_00950 PF17760 UvrA interaction domain HIN88_00955 PF00440 Bacterial regulatory proteins, tetR family HIN88_00955 PF16925 Tetracyclin repressor-like, C-terminal domain HIN88_00960 PF00107 Zinc-binding dehydrogenase HIN88_00960 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_00970 PF06942 GlpM protein HIN88_00975 PF08543 Phosphomethylpyrimidine kinase HIN88_00975 PF02581 Thiamine monophosphate synthase HIN88_00975 PF03070 TENA/THI-4/PQQC family HIN88_00985 PF07690 Major Facilitator Superfamily HIN88_00990 PF00436 Single-strand binding protein family HIN88_01000 PF03591 AzlC protein HIN88_01010 PF00324 Amino acid permease HIN88_01015 PF00392 Bacterial regulatory proteins, gntR family HIN88_01015 PF00155 Aminotransferase class I and II HIN88_01020 PF00202 Aminotransferase class-III HIN88_01025 PF00171 Aldehyde dehydrogenase family HIN88_01030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_01035 PF00857 Isochorismatase family HIN88_01040 PF05726 Pirin C-terminal cupin domain HIN88_01040 PF02678 Pirin HIN88_01045 PF01593 Flavin containing amine oxidoreductase HIN88_01105 PF07690 Major Facilitator Superfamily HIN88_01130 PF00248 Aldo/keto reductase family HIN88_01135 PF02311 AraC-like ligand binding domain HIN88_01135 PF12833 Helix-turn-helix domain HIN88_01165 PF01638 HxlR-like helix-turn-helix HIN88_01170 PF02525 Flavodoxin-like fold HIN88_01185 PF02705 K+ potassium transporter HIN88_01210 PF00230 Major intrinsic protein HIN88_01225 PF00977 Histidine biosynthesis protein HIN88_01230 PF01636 Phosphotransferase enzyme family HIN88_01255 PF00664 ABC transporter transmembrane region HIN88_01255 PF00005 ABC transporter HIN88_01260 PF00977 Histidine biosynthesis protein HIN88_01275 PF00117 Glutamine amidotransferase class-I HIN88_01280 PF00475 Imidazoleglycerol-phosphate dehydratase HIN88_01305 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain HIN88_01305 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain HIN88_01315 PF00512 His Kinase A (phospho-acceptor) domain HIN88_01315 PF00672 HAMP domain HIN88_01315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_01320 PF00072 Response regulator receiver domain HIN88_01320 PF00486 Transcriptional regulatory protein, C terminal HIN88_01325 PF17674 HHH domain HIN88_01325 PF00575 S1 RNA binding domain HIN88_01325 PF09371 Tex-like protein N-terminal domain HIN88_01325 PF16921 Tex protein YqgF-like domain HIN88_01330 PF00916 Sulfate permease family HIN88_01330 PF01740 STAS domain HIN88_01335 PF00106 short chain dehydrogenase HIN88_01340 PF01053 Cys/Met metabolism PLP-dependent enzyme HIN88_01345 PF00005 ABC transporter HIN88_01345 PF12848 ABC transporter HIN88_01370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_01370 PF00529 HlyD membrane-fusion protein of T1SS HIN88_01375 PF00873 AcrB/AcrD/AcrF family HIN88_01380 PF01545 Cation efflux family HIN88_01410 PF00324 Amino acid permease HIN88_01425 PF00749 tRNA synthetases class I (E and Q), catalytic domain HIN88_01440 PF01795 MraW methylase family HIN88_01450 PF03717 Penicillin-binding Protein dimerisation domain HIN88_01450 PF00905 Penicillin binding protein transpeptidase domain HIN88_01455 PF02875 Mur ligase family, glutamate ligase domain HIN88_01455 PF08245 Mur ligase middle domain HIN88_01455 PF01225 Mur ligase family, catalytic domain HIN88_01460 PF02875 Mur ligase family, glutamate ligase domain HIN88_01460 PF08245 Mur ligase middle domain HIN88_01460 PF01225 Mur ligase family, catalytic domain HIN88_01465 PF00953 Glycosyl transferase family 4 HIN88_01475 PF13847 Methyltransferase domain HIN88_01480 PF17092 Penicillin-binding protein OB-like domain HIN88_01480 PF00912 Transglycosylase HIN88_01480 PF00905 Penicillin binding protein transpeptidase domain HIN88_01505 PF11741 AMIN domain HIN88_01505 PF00263 Bacterial type II and III secretion system protein HIN88_01505 PF03958 Bacterial type II/III secretion system short domain HIN88_01505 PF07660 Secretin and TonB N terminus short domain HIN88_01510 PF01202 Shikimate kinase HIN88_01515 PF01761 3-dehydroquinate synthase HIN88_01525 PF01645 Conserved region in glutamate synthase HIN88_01525 PF01493 GXGXG motif HIN88_01525 PF00310 Glutamine amidotransferases class-II HIN88_01525 PF04898 Glutamate synthase central domain HIN88_01530 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_01530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HIN88_01540 PF04011 LemA family HIN88_01545 PF04536 TPM domain HIN88_01555 PF07963 Prokaryotic N-terminal methylation motif HIN88_01555 PF00114 Pilin (bacterial filament) HIN88_01560 PF15864 Protein glycosylation ligase HIN88_01560 PF04932 O-Antigen ligase HIN88_01560 PF11846 Virulence factor membrane-bound polymerase, C-terminal HIN88_01565 PF00210 Ferritin-like domain HIN88_01570 PF04324 BFD-like [2Fe-2S] binding domain HIN88_01575 PF01042 Endoribonuclease L-PSP HIN88_01580 PF13291 ACT domain HIN88_01580 PF04607 Region found in RelA / SpoT proteins HIN88_01580 PF02824 TGS domain HIN88_01590 PF01192 RNA polymerase Rpb6 HIN88_01595 PF00625 Guanylate kinase HIN88_01600 PF02401 LytB protein HIN88_01640 PF00886 Ribosomal protein S16 HIN88_01645 PF01782 RimM N-terminal domain HIN88_01645 PF05239 PRC-barrel domain HIN88_01650 PF01746 tRNA (Guanine-1)-methyltransferase HIN88_01655 PF01245 Ribosomal protein L19 HIN88_01660 PF00561 alpha/beta hydrolase fold HIN88_01665 PF03280 Proteobacterial lipase chaperone protein HIN88_01670 PF01509 TruB family pseudouridylate synthase (N terminal domain) HIN88_01670 PF09157 Pseudouridine synthase II TruB, C-terminal HIN88_01670 PF16198 tRNA pseudouridylate synthase B C-terminal domain HIN88_01675 PF01925 Sulfite exporter TauE/SafE HIN88_01685 PF00892 EamA-like transporter family HIN88_01690 PF00892 EamA-like transporter family HIN88_01695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HIN88_01695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HIN88_01700 PF01565 FAD binding domain HIN88_01700 PF02913 FAD linked oxidases, C-terminal domain HIN88_01710 PF03992 Antibiotic biosynthesis monooxygenase HIN88_01715 PF02525 Flavodoxin-like fold HIN88_01725 PF07690 Major Facilitator Superfamily HIN88_01730 PF12805 FUSC-like inner membrane protein yccS HIN88_01735 PF00080 Copper/zinc superoxide dismutase (SODC) HIN88_01740 PF01594 AI-2E family transporter HIN88_01745 PF13614 AAA domain HIN88_01765 PF08241 Methyltransferase domain HIN88_01775 PF00324 Amino acid permease HIN88_01780 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HIN88_01780 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HIN88_01785 PF00202 Aminotransferase class-III HIN88_01790 PF04958 Arginine N-succinyltransferase beta subunit HIN88_01795 PF00171 Aldehyde dehydrogenase family HIN88_01800 PF04996 Succinylarginine dihydrolase HIN88_01805 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HIN88_01820 PF00082 Subtilase family HIN88_01820 PF05922 Peptidase inhibitor I9 HIN88_01835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_01835 PF03466 LysR substrate binding domain HIN88_01840 PF00892 EamA-like transporter family HIN88_01850 PF02092 Glycyl-tRNA synthetase beta subunit HIN88_01850 PF05746 DALR anticodon binding domain HIN88_01855 PF02091 Glycyl-tRNA synthetase alpha subunit HIN88_01880 PF00571 CBS domain HIN88_01885 PF04024 PspC domain HIN88_01895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_01895 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_01895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_01895 PF12806 Acetyl-CoA dehydrogenase C-terminal like HIN88_01905 PF01488 Shikimate / quinate 5-dehydrogenase HIN88_01905 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HIN88_01905 PF08501 Shikimate dehydrogenase substrate binding domain HIN88_01910 PF01218 Coproporphyrinogen III oxidase HIN88_01915 PF00925 GTP cyclohydrolase II HIN88_01920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HIN88_01920 PF02779 Transketolase, pyrimidine binding domain HIN88_01920 PF02780 Transketolase, C-terminal domain HIN88_01925 PF00459 Inositol monophosphatase family HIN88_01930 PF03880 DbpA RNA binding domain HIN88_01930 PF00270 DEAD/DEAH box helicase HIN88_01930 PF12343 Cold shock protein DEAD box A HIN88_01930 PF00271 Helicase conserved C-terminal domain HIN88_01940 PF00005 ABC transporter HIN88_01945 PF02405 Permease MlaE HIN88_01955 PF05494 MlaC protein HIN88_01965 PF01544 CorA-like Mg2+ transporter protein HIN88_01970 PF03641 Possible lysine decarboxylase HIN88_01975 PF00293 NUDIX domain HIN88_01980 PF00156 Phosphoribosyl transferase domain HIN88_01985 PF17191 RecG wedge domain HIN88_01985 PF00270 DEAD/DEAH box helicase HIN88_01985 PF00271 Helicase conserved C-terminal domain HIN88_02000 PF01553 Acyltransferase HIN88_02010 PF00375 Sodium:dicarboxylate symporter family HIN88_02020 PF01926 50S ribosome-binding GTPase HIN88_02025 PF02082 Transcriptional regulator HIN88_02030 PF00970 Oxidoreductase FAD-binding domain HIN88_02030 PF00042 Globin HIN88_02030 PF00175 Oxidoreductase NAD-binding domain HIN88_02040 PF05872 Bacterial protein of unknown function (DUF853) HIN88_02045 PF01053 Cys/Met metabolism PLP-dependent enzyme HIN88_02050 PF00117 Glutamine amidotransferase class-I HIN88_02055 PF00338 Ribosomal protein S10p/S20e HIN88_02060 PF00297 Ribosomal protein L3 HIN88_02065 PF00573 Ribosomal protein L4/L1 family HIN88_02070 PF00276 Ribosomal protein L23 HIN88_02075 PF00181 Ribosomal Proteins L2, RNA binding domain HIN88_02075 PF03947 Ribosomal Proteins L2, C-terminal domain HIN88_02080 PF00203 Ribosomal protein S19 HIN88_02085 PF00237 Ribosomal protein L22p/L17e HIN88_02090 PF07650 KH domain HIN88_02090 PF00189 Ribosomal protein S3, C-terminal domain HIN88_02095 PF00252 Ribosomal protein L16p/L10e HIN88_02100 PF00831 Ribosomal L29 protein HIN88_02105 PF00366 Ribosomal protein S17 HIN88_02110 PF00238 Ribosomal protein L14p/L23e HIN88_02115 PF00467 KOW motif HIN88_02115 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HIN88_02120 PF00673 ribosomal L5P family C-terminus HIN88_02120 PF00281 Ribosomal protein L5 HIN88_02125 PF00253 Ribosomal protein S14p/S29e HIN88_02130 PF00410 Ribosomal protein S8 HIN88_02135 PF00347 Ribosomal protein L6 HIN88_02140 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HIN88_02145 PF00333 Ribosomal protein S5, N-terminal domain HIN88_02145 PF03719 Ribosomal protein S5, C-terminal domain HIN88_02150 PF00327 Ribosomal protein L30p/L7e HIN88_02155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HIN88_02160 PF00344 SecY translocase HIN88_02165 PF00444 Ribosomal protein L36 HIN88_02170 PF00416 Ribosomal protein S13/S18 HIN88_02175 PF00411 Ribosomal protein S11 HIN88_02180 PF00163 Ribosomal protein S4/S9 N-terminal domain HIN88_02180 PF01479 S4 domain HIN88_02185 PF01000 RNA polymerase Rpb3/RpoA insert domain HIN88_02185 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HIN88_02185 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HIN88_02190 PF01196 Ribosomal protein L17 HIN88_02195 PF00743 Flavin-binding monooxygenase-like HIN88_02200 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_02200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_02200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_02205 PF03937 Flavinator of succinate dehydrogenase HIN88_02235 PF09526 Probable metal-binding protein (DUF2387) HIN88_02240 PF01432 Peptidase family M3 HIN88_02245 PF00575 S1 RNA binding domain HIN88_02245 PF00773 RNB domain HIN88_02245 PF08206 Ribonuclease B OB domain HIN88_02245 PF17876 Cold shock domain HIN88_02245 PF08461 Ribonuclease R winged-helix domain HIN88_02290 PF01557 Fumarylacetoacetate (FAA) hydrolase family HIN88_02295 PF12833 Helix-turn-helix domain HIN88_02300 PF00892 EamA-like transporter family HIN88_02305 PF03631 Virulence factor BrkB HIN88_02310 PF03358 NADPH-dependent FMN reductase HIN88_02335 PF02130 Uncharacterized protein family UPF0054 HIN88_02340 PF02562 PhoH-like protein HIN88_02345 PF01938 TRAM domain HIN88_02345 PF04055 Radical SAM superfamily HIN88_02345 PF00919 Uncharacterized protein family UPF0004 HIN88_02350 PF10145 Phage-related minor tail protein HIN88_02350 PF01551 Peptidase family M23 HIN88_02350 PF01464 Transglycosylase SLT domain HIN88_02360 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HIN88_02360 PF00056 lactate/malate dehydrogenase, NAD binding domain HIN88_02380 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HIN88_02385 PF01066 CDP-alcohol phosphatidyltransferase HIN88_02430 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_02430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_02430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_02435 PF00440 Bacterial regulatory proteins, tetR family HIN88_02435 PF17932 Tetracyclin repressor-like, C-terminal domain HIN88_02450 PF01039 Carboxyl transferase domain HIN88_02455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_02455 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_02455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_02460 PF00378 Enoyl-CoA hydratase/isomerase HIN88_02465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HIN88_02465 PF00364 Biotin-requiring enzyme HIN88_02465 PF00289 Biotin carboxylase, N-terminal domain HIN88_02465 PF02785 Biotin carboxylase C-terminal domain HIN88_02475 PF04386 Stringent starvation protein B HIN88_02480 PF13417 Glutathione S-transferase, N-terminal domain HIN88_02480 PF00043 Glutathione S-transferase, C-terminal domain HIN88_02485 PF00380 Ribosomal protein S9/S16 HIN88_02490 PF00572 Ribosomal protein L13 HIN88_02495 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HIN88_02500 PF00398 Ribosomal RNA adenine dimethylase HIN88_02505 PF00149 Calcineurin-like phosphoesterase HIN88_02525 PF16360 GTP-binding GTPase Middle Region HIN88_02525 PF13167 GTP-binding GTPase N-terminal HIN88_02525 PF01926 50S ribosome-binding GTPase HIN88_02535 PF13091 PLD-like domain HIN88_02540 PF10518 TAT (twin-arginine translocation) pathway signal sequence HIN88_02540 PF00149 Calcineurin-like phosphoesterase HIN88_02545 PF01389 OmpA-like transmembrane domain HIN88_02545 PF00691 OmpA family HIN88_02550 PF00990 Diguanylate cyclase, GGDEF domain HIN88_02550 PF17152 Periplasmic sensor domain HIN88_02585 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_02585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HIN88_02595 PF00753 Metallo-beta-lactamase superfamily HIN88_02595 PF04273 Putative phosphatase (DUF442) HIN88_02600 PF00561 alpha/beta hydrolase fold HIN88_02605 PF00085 Thioredoxin HIN88_02610 PF03061 Thioesterase superfamily HIN88_02620 PF04461 Protein of unknown function (DUF520) HIN88_02630 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HIN88_02630 PF01266 FAD dependent oxidoreductase HIN88_02640 PF03795 YCII-related domain HIN88_02645 PF04279 Intracellular septation protein A HIN88_02650 PF02811 PHP domain HIN88_02655 PF01062 Bestrophin, RFP-TM, chloride channel HIN88_02660 PF04002 RadC-like JAB domain HIN88_02665 PF02441 Flavoprotein HIN88_02665 PF04127 DNA / pantothenate metabolism flavoprotein HIN88_02670 PF07549 SecD/SecF GG Motif HIN88_02670 PF02355 Protein export membrane protein HIN88_02675 PF02355 Protein export membrane protein HIN88_02675 PF13721 SecD export protein N-terminal TM region HIN88_02675 PF07549 SecD/SecF GG Motif HIN88_02680 PF02699 Preprotein translocase subunit HIN88_02685 PF01702 Queuine tRNA-ribosyltransferase HIN88_02705 PF02547 Queuosine biosynthesis protein HIN88_02715 PF07689 KaiB domain HIN88_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_02715 PF00512 His Kinase A (phospho-acceptor) domain HIN88_02720 PF08335 GlnD PII-uridylyltransferase HIN88_02720 PF03710 Glutamate-ammonia ligase adenylyltransferase HIN88_02725 PF01063 Amino-transferase class IV HIN88_02735 PF01522 Polysaccharide deacetylase HIN88_02740 PF00534 Glycosyl transferases group 1 HIN88_02740 PF13439 Glycosyltransferase Family 4 HIN88_02750 PF00534 Glycosyl transferases group 1 HIN88_02750 PF13439 Glycosyltransferase Family 4 HIN88_02760 PF09612 Bacterial protein of unknown function (HtrL_YibB) HIN88_02765 PF08437 Glycosyl transferase family 8 C-terminal HIN88_02765 PF01501 Glycosyl transferase family 8 HIN88_02780 PF17101 Stealth protein CR1, conserved region 1 HIN88_02780 PF11380 Stealth protein CR2, conserved region 2 HIN88_02780 PF17102 Stealth protein CR3, conserved region 3 HIN88_02785 PF02938 GAD domain HIN88_02785 PF01336 OB-fold nucleic acid binding domain HIN88_02785 PF00152 tRNA synthetases class II (D, K and N) HIN88_02795 PF07715 TonB-dependent Receptor Plug Domain HIN88_02795 PF00593 TonB dependent receptor HIN88_02815 PF06146 Phosphate-starvation-inducible E HIN88_02820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_02820 PF12806 Acetyl-CoA dehydrogenase C-terminal like HIN88_02820 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_02820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_02825 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_02825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_02825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_02825 PF12806 Acetyl-CoA dehydrogenase C-terminal like HIN88_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_02835 PF00512 His Kinase A (phospho-acceptor) domain HIN88_02835 PF00672 HAMP domain HIN88_02840 PF00072 Response regulator receiver domain HIN88_02840 PF00486 Transcriptional regulatory protein, C terminal HIN88_02845 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HIN88_02865 PF01923 Cobalamin adenosyltransferase HIN88_02870 PF07715 TonB-dependent Receptor Plug Domain HIN88_02870 PF00593 TonB dependent receptor HIN88_02875 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HIN88_02880 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_02905 PF00290 Tryptophan synthase alpha chain HIN88_02910 PF01039 Carboxyl transferase domain HIN88_02915 PF02875 Mur ligase family, glutamate ligase domain HIN88_02915 PF08245 Mur ligase middle domain HIN88_02930 PF00753 Metallo-beta-lactamase superfamily HIN88_02935 PF00578 AhpC/TSA family HIN88_02935 PF10417 C-terminal domain of 1-Cys peroxiredoxin HIN88_02940 PF02810 SEC-C motif HIN88_02940 PF07516 SecA Wing and Scaffold domain HIN88_02940 PF01043 SecA preprotein cross-linking domain HIN88_02940 PF07517 SecA DEAD-like domain HIN88_02950 PF07690 Major Facilitator Superfamily HIN88_02950 PF00083 Sugar (and other) transporter HIN88_02955 PF03006 Haemolysin-III related HIN88_02980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HIN88_02980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HIN88_02980 PF00378 Enoyl-CoA hydratase/isomerase HIN88_02985 PF00108 Thiolase, N-terminal domain HIN88_02985 PF02803 Thiolase, C-terminal domain HIN88_02990 PF12833 Helix-turn-helix domain HIN88_02990 PF02311 AraC-like ligand binding domain HIN88_02995 PF02515 CoA-transferase family III HIN88_03000 PF04966 Carbohydrate-selective porin, OprB family HIN88_03005 PF01011 PQQ enzyme repeat HIN88_03010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HIN88_03010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HIN88_03020 PF00893 Small Multidrug Resistance protein HIN88_03030 PF00108 Thiolase, N-terminal domain HIN88_03030 PF02803 Thiolase, C-terminal domain HIN88_03040 PF13505 Outer membrane protein beta-barrel domain HIN88_03040 PF00691 OmpA family HIN88_03050 PF01139 tRNA-splicing ligase RtcB HIN88_03055 PF00324 Amino acid permease HIN88_03060 PF05175 Methyltransferase small domain HIN88_03060 PF08468 Methyltransferase small domain N-terminal HIN88_03065 PF00860 Permease family HIN88_03075 PF01741 Large-conductance mechanosensitive channel, MscL HIN88_03090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HIN88_03090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HIN88_03090 PF06827 Zinc finger found in FPG and IleRS HIN88_03095 PF02245 Methylpurine-DNA glycosylase (MPG) HIN88_03100 PF07715 TonB-dependent Receptor Plug Domain HIN88_03100 PF00593 TonB dependent receptor HIN88_03105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HIN88_03120 PF13098 Thioredoxin-like domain HIN88_03120 PF10411 Disulfide bond isomerase protein N-terminus HIN88_03125 PF01571 Aminomethyltransferase folate-binding domain HIN88_03135 PF04343 Protein of unknown function, DUF488 HIN88_03140 PF03831 PhnA domain HIN88_03140 PF08274 PhnA Zinc-Ribbon HIN88_03145 PF07411 Domain of unknown function (DUF1508) HIN88_03150 PF03129 Anticodon binding domain HIN88_03150 PF04073 Aminoacyl-tRNA editing domain HIN88_03150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HIN88_03155 PF00873 AcrB/AcrD/AcrF family HIN88_03170 PF00072 Response regulator receiver domain HIN88_03175 PF00072 Response regulator receiver domain HIN88_03180 PF01584 CheW-like domain HIN88_03185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HIN88_03185 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HIN88_03190 PF00072 Response regulator receiver domain HIN88_03190 PF01627 Hpt domain HIN88_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_03190 PF01584 CheW-like domain HIN88_03200 PF04055 Radical SAM superfamily HIN88_03200 PF06969 HemN C-terminal domain HIN88_03210 PF07687 Peptidase dimerisation domain HIN88_03210 PF01546 Peptidase family M20/M25/M40 HIN88_03215 PF08085 Entericidin EcnA/B family HIN88_03225 PF04304 Protein of unknown function (DUF454) HIN88_03230 PF03734 L,D-transpeptidase catalytic domain HIN88_03230 PF17969 L,D-transpeptidase C-terminal domain HIN88_03270 PF00258 Flavodoxin HIN88_03270 PF00667 FAD binding domain HIN88_03270 PF00175 Oxidoreductase NAD-binding domain HIN88_03280 PF12805 FUSC-like inner membrane protein yccS HIN88_03285 PF07690 Major Facilitator Superfamily HIN88_03290 PF00881 Nitroreductase family HIN88_03305 PF01235 Sodium:alanine symporter family HIN88_03310 PF01734 Patatin-like phospholipase HIN88_03315 PF13291 ACT domain HIN88_03315 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_03320 PF05992 SbmA/BacA-like family HIN88_03345 PF02637 GatB domain HIN88_03345 PF02934 GatB/GatE catalytic domain HIN88_03350 PF01425 Amidase HIN88_03355 PF02686 Glu-tRNAGln amidotransferase C subunit HIN88_03365 PF04085 rod shape-determining protein MreC HIN88_03370 PF04093 rod shape-determining protein MreD HIN88_03375 PF02545 Maf-like protein HIN88_03380 PF00575 S1 RNA binding domain HIN88_03380 PF10150 Ribonuclease E/G family HIN88_03390 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HIN88_03390 PF06974 Protein of unknown function (DUF1298) HIN88_03395 PF01507 Phosphoadenosine phosphosulfate reductase family HIN88_03410 PF02525 Flavodoxin-like fold HIN88_03430 PF02673 Bacitracin resistance protein BacA HIN88_03435 PF06719 AraC-type transcriptional regulator N-terminus HIN88_03435 PF12833 Helix-turn-helix domain HIN88_03440 PF00550 Phosphopantetheine attachment site HIN88_03440 PF00698 Acyl transferase domain HIN88_03440 PF00109 Beta-ketoacyl synthase, N-terminal domain HIN88_03440 PF08659 KR domain HIN88_03440 PF14765 Polyketide synthase dehydratase HIN88_03440 PF02801 Beta-ketoacyl synthase, C-terminal domain HIN88_03440 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_03440 PF16197 Ketoacyl-synthetase C-terminal extension HIN88_03440 PF09277 Erythronolide synthase, docking HIN88_03440 PF08990 Erythronolide synthase docking HIN88_03445 PF01965 DJ-1/PfpI family HIN88_03455 PF00324 Amino acid permease HIN88_03460 PF04303 PrpF protein HIN88_03465 PF00348 Polyprenyl synthetase HIN88_03470 PF04237 YjbR HIN88_03475 PF01145 SPFH domain / Band 7 family HIN88_03485 PF01734 Patatin-like phospholipase HIN88_03505 PF00884 Sulfatase HIN88_03505 PF08019 Phosphoethanolamine transferase EptA/EptB HIN88_03510 PF00072 Response regulator receiver domain HIN88_03510 PF00486 Transcriptional regulatory protein, C terminal HIN88_03515 PF08521 Two-component sensor kinase N-terminal HIN88_03515 PF00512 His Kinase A (phospho-acceptor) domain HIN88_03515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_03525 PF00909 Ammonium Transporter Family HIN88_03530 PF03466 LysR substrate binding domain HIN88_03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_03550 PF00133 tRNA synthetases class I (I, L, M and V) HIN88_03550 PF08264 Anticodon-binding domain of tRNA HIN88_03550 PF10458 Valyl tRNA synthetase tRNA binding arm HIN88_03570 PF01906 Putative heavy-metal-binding HIN88_03575 PF01906 Putative heavy-metal-binding HIN88_03580 PF02321 Outer membrane efflux protein HIN88_03585 PF00873 AcrB/AcrD/AcrF family HIN88_03590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_03590 PF00529 HlyD membrane-fusion protein of T1SS HIN88_03605 PF00348 Polyprenyl synthetase HIN88_03615 PF00829 Ribosomal prokaryotic L21 protein HIN88_03620 PF01016 Ribosomal L27 protein HIN88_03625 PF03548 Outer membrane lipoprotein carrier protein LolA HIN88_03635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HIN88_03635 PF02403 Seryl-tRNA synthetase N-terminal domain HIN88_03640 PF10414 Sirohaem synthase dimerisation region HIN88_03640 PF14824 Sirohaem biosynthesis protein central HIN88_03640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HIN88_03645 PF00588 SpoU rRNA Methylase family HIN88_03650 PF01638 HxlR-like helix-turn-helix HIN88_03655 PF03358 NADPH-dependent FMN reductase HIN88_03660 PF13520 Amino acid permease HIN88_03665 PF00465 Iron-containing alcohol dehydrogenase HIN88_03675 PF03099 Biotin/lipoate A/B protein ligase family HIN88_03680 PF04359 Protein of unknown function (DUF493) HIN88_03685 PF04542 Sigma-70 region 2 HIN88_03685 PF00140 Sigma-70 factor, region 1.2 HIN88_03685 PF03979 Sigma-70 factor, region 1.1 HIN88_03685 PF04546 Sigma-70, non-essential region HIN88_03685 PF04545 Sigma-70, region 4 HIN88_03685 PF04539 Sigma-70 region 3 HIN88_03710 PF00285 Citrate synthase, C-terminal domain HIN88_03715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HIN88_03720 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HIN88_03725 PF02910 Fumarate reductase flavoprotein C-term HIN88_03725 PF00890 FAD binding domain HIN88_03730 PF13085 2Fe-2S iron-sulfur cluster binding domain HIN88_03745 PF02779 Transketolase, pyrimidine binding domain HIN88_03745 PF16870 2-oxoglutarate dehydrogenase C-terminal HIN88_03745 PF00676 Dehydrogenase E1 component HIN88_03745 PF16078 2-oxoglutarate dehydrogenase N-terminus HIN88_03750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HIN88_03750 PF02817 e3 binding domain HIN88_03750 PF00364 Biotin-requiring enzyme HIN88_03755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HIN88_03755 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_03760 PF00549 CoA-ligase HIN88_03760 PF08442 ATP-grasp domain HIN88_03765 PF02629 CoA binding domain HIN88_03765 PF00549 CoA-ligase HIN88_03770 PF00579 tRNA synthetases class I (W and Y) HIN88_03775 PF05661 Protein of unknown function (DUF808) HIN88_03780 PF04228 Putative neutral zinc metallopeptidase HIN88_03785 PF00999 Sodium/hydrogen exchanger family HIN88_03830 PF09587 Bacterial capsule synthesis protein PGA_cap HIN88_03840 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HIN88_03845 PF00582 Universal stress protein family HIN88_03850 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_03855 PF01272 Transcription elongation factor, GreA/GreB, C-term HIN88_03855 PF03449 Transcription elongation factor, N-terminal HIN88_03860 PF02142 MGS-like domain HIN88_03860 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HIN88_03860 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HIN88_03865 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HIN88_03865 PF00117 Glutamine amidotransferase class-I HIN88_03880 PF01985 CRS1 / YhbY (CRM) domain HIN88_03885 PF01728 FtsJ-like methyltransferase HIN88_03890 PF06480 FtsH Extracellular HIN88_03890 PF17862 AAA+ lid domain HIN88_03890 PF01434 Peptidase family M41 HIN88_03890 PF00004 ATPase family associated with various cellular activities (AAA) HIN88_03895 PF00809 Pterin binding enzyme HIN88_03915 PF09423 PhoD-like phosphatase HIN88_03915 PF16655 PhoD-like phosphatase, N-terminal domain HIN88_03930 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HIN88_03930 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HIN88_03945 PF00083 Sugar (and other) transporter HIN88_03950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HIN88_03950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HIN88_03955 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HIN88_03955 PF01266 FAD dependent oxidoreductase HIN88_03960 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain HIN88_03960 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain HIN88_03965 PF00781 Diacylglycerol kinase catalytic domain HIN88_03970 PF00149 Calcineurin-like phosphoesterase HIN88_03975 PF00166 Chaperonin 10 Kd subunit HIN88_03980 PF00118 TCP-1/cpn60 chaperonin family HIN88_03985 PF01219 Prokaryotic diacylglycerol kinase HIN88_03990 PF00753 Metallo-beta-lactamase superfamily HIN88_03995 PF03009 Glycerophosphoryl diester phosphodiesterase family HIN88_04000 PF00873 AcrB/AcrD/AcrF family HIN88_04010 PF01435 Peptidase family M48 HIN88_04015 PF01464 Transglycosylase SLT domain HIN88_04020 PF01171 PP-loop family HIN88_04030 PF00497 Bacterial extracellular solute-binding proteins, family 3 HIN88_04030 PF01464 Transglycosylase SLT domain HIN88_04035 PF01272 Transcription elongation factor, GreA/GreB, C-term HIN88_04035 PF03449 Transcription elongation factor, N-terminal HIN88_04050 PF13193 AMP-binding enzyme C-terminal domain HIN88_04050 PF00975 Thioesterase domain HIN88_04050 PF00501 AMP-binding enzyme HIN88_04050 PF00550 Phosphopantetheine attachment site HIN88_04050 PF00668 Condensation domain HIN88_04085 PF00881 Nitroreductase family HIN88_04100 PF02595 Glycerate kinase family HIN88_04105 PF00384 Molybdopterin oxidoreductase HIN88_04110 PF02634 FdhD/NarQ family HIN88_04115 PF06803 Protein of unknown function (DUF1232) HIN88_04120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HIN88_04120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HIN88_04120 PF11890 Domain of unknown function (DUF3410) HIN88_04125 PF00152 tRNA synthetases class II (D, K and N) HIN88_04135 PF18073 Rubredoxin metal binding domain HIN88_04140 PF00324 Amino acid permease HIN88_04150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HIN88_04150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HIN88_04155 PF01678 Diaminopimelate epimerase HIN88_04160 PF01810 LysE type translocator HIN88_04165 PF02899 Phage integrase, N-terminal SAM-like domain HIN88_04165 PF00589 Phage integrase family HIN88_04170 PF01012 Electron transfer flavoprotein domain HIN88_04175 PF01012 Electron transfer flavoprotein domain HIN88_04175 PF00766 Electron transfer flavoprotein FAD-binding domain HIN88_04180 PF03989 DNA gyrase C-terminal domain, beta-propeller HIN88_04180 PF00521 DNA gyrase/topoisomerase IV, subunit A HIN88_04195 PF00535 Glycosyl transferase family 2 HIN88_04215 PF13533 Biotin-lipoyl like HIN88_04225 PF00266 Aminotransferase class-V HIN88_04235 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HIN88_04245 PF02687 FtsX-like permease family HIN88_04245 PF12704 MacB-like periplasmic core domain HIN88_04250 PF00005 ABC transporter HIN88_04255 PF00753 Metallo-beta-lactamase superfamily HIN88_04255 PF13567 Domain of unknown function (DUF4131) HIN88_04255 PF03772 Competence protein HIN88_04265 PF06965 Na+/H+ antiporter 1 HIN88_04265 PF01343 Peptidase family S49 HIN88_04270 PF12697 Alpha/beta hydrolase family HIN88_04275 PF00551 Formyl transferase HIN88_04280 PF00586 AIR synthase related protein, N-terminal domain HIN88_04280 PF02769 AIR synthase related protein, C-terminal domain HIN88_04285 PF01594 AI-2E family transporter HIN88_04290 PF00308 Bacterial dnaA protein HIN88_04290 PF08299 Bacterial dnaA protein helix-turn-helix HIN88_04290 PF11638 DnaA N-terminal domain HIN88_04320 PF00588 SpoU rRNA Methylase family HIN88_04320 PF08032 RNA 2'-O ribose methyltransferase substrate binding HIN88_04325 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HIN88_04335 PF00691 OmpA family HIN88_04340 PF07676 WD40-like Beta Propeller Repeat HIN88_04340 PF04052 TolB amino-terminal domain HIN88_04350 PF02472 Biopolymer transport protein ExbD/TolR HIN88_04355 PF01618 MotA/TolQ/ExbB proton channel family HIN88_04360 PF03061 Thioesterase superfamily HIN88_04365 PF01546 Peptidase family M20/M25/M40 HIN88_04365 PF07687 Peptidase dimerisation domain HIN88_04370 PF17864 RuvB AAA lid domain HIN88_04370 PF05491 RuvB C-terminal winged helix domain HIN88_04370 PF05496 Holliday junction DNA helicase RuvB P-loop domain HIN88_04375 PF01330 RuvA N terminal domain HIN88_04375 PF07499 RuvA, C-terminal domain HIN88_04380 PF01966 HD domain HIN88_04385 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HIN88_04385 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HIN88_04385 PF02769 AIR synthase related protein, C-terminal domain HIN88_04390 PF07690 Major Facilitator Superfamily HIN88_04395 PF01784 NIF3 (NGG1p interacting factor 3) HIN88_04400 PF00378 Enoyl-CoA hydratase/isomerase HIN88_04405 PF00293 NUDIX domain HIN88_04405 PF01467 Cytidylyltransferase-like HIN88_04415 PF00578 AhpC/TSA family HIN88_04430 PF06508 Queuosine biosynthesis protein QueC HIN88_04440 PF14602 Hexapeptide repeat of succinyl-transferase HIN88_04440 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HIN88_04440 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_04450 PF03466 LysR substrate binding domain HIN88_04455 PF12857 TOBE-like domain HIN88_04455 PF00005 ABC transporter HIN88_04460 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_04465 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_04480 PF01063 Amino-transferase class IV HIN88_04485 PF02618 YceG-like family HIN88_04490 PF02223 Thymidylate kinase HIN88_04500 PF02910 Fumarate reductase flavoprotein C-term HIN88_04500 PF00890 FAD binding domain HIN88_04505 PF13180 PDZ domain HIN88_04515 PF06421 GTP-binding protein LepA C-terminus HIN88_04515 PF03144 Elongation factor Tu domain 2 HIN88_04515 PF00009 Elongation factor Tu GTP binding domain HIN88_04515 PF00679 Elongation factor G C-terminus HIN88_04520 PF10502 Signal peptidase, peptidase S26 HIN88_04530 PF14622 Ribonuclease-III-like HIN88_04530 PF00035 Double-stranded RNA binding motif HIN88_04535 PF07650 KH domain HIN88_04535 PF01926 50S ribosome-binding GTPase HIN88_04545 PF02565 Recombination protein O C terminal HIN88_04545 PF11967 Recombination protein O N terminal HIN88_04550 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HIN88_04555 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HIN88_04560 PF00106 short chain dehydrogenase HIN88_04590 PF00155 Aminotransferase class I and II HIN88_04600 PF17151 Periplasmic sensor domain HIN88_04600 PF00990 Diguanylate cyclase, GGDEF domain HIN88_04610 PF00271 Helicase conserved C-terminal domain HIN88_04610 PF04851 Type III restriction enzyme, res subunit HIN88_04610 PF17757 UvrB interaction domain HIN88_04610 PF02151 UvrB/uvrC motif HIN88_04610 PF12344 Ultra-violet resistance protein B HIN88_04620 PF00892 EamA-like transporter family HIN88_04625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HIN88_04625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HIN88_04640 PF01926 50S ribosome-binding GTPase HIN88_04640 PF01018 GTP1/OBG HIN88_04645 PF01472 PUA domain HIN88_04645 PF00696 Amino acid kinase family HIN88_04655 PF07759 Protein of unknown function (DUF1615) HIN88_04660 PF01207 Dihydrouridine synthase (Dus) HIN88_04665 PF03060 Nitronate monooxygenase HIN88_04680 PF02350 UDP-N-acetylglucosamine 2-epimerase HIN88_04710 PF00875 DNA photolyase HIN88_04710 PF03441 FAD binding domain of DNA photolyase HIN88_04715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HIN88_04720 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_04725 PF00768 D-alanyl-D-alanine carboxypeptidase HIN88_04725 PF07943 Penicillin-binding protein 5, C-terminal domain HIN88_04735 PF03971 Monomeric isocitrate dehydrogenase HIN88_04740 PF00849 RNA pseudouridylate synthase HIN88_04840 PF00772 DnaB-like helicase N terminal domain HIN88_04840 PF03796 DnaB-like helicase C terminal domain HIN88_05015 PF13438 Domain of unknown function (DUF4113) HIN88_05015 PF00817 impB/mucB/samB family HIN88_05015 PF11799 impB/mucB/samB family C-terminal domain HIN88_05020 PF13356 Arm DNA-binding domain HIN88_05020 PF00589 Phage integrase family HIN88_05025 PF00180 Isocitrate/isopropylmalate dehydrogenase HIN88_05045 PF06779 Uncharacterised MFS-type transporter YbfB HIN88_05050 PF03466 LysR substrate binding domain HIN88_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_05060 PF02567 Phenazine biosynthesis-like protein HIN88_05065 PF05193 Peptidase M16 inactive domain HIN88_05065 PF00675 Insulinase (Peptidase family M16) HIN88_05090 PF02581 Thiamine monophosphate synthase HIN88_05095 PF00202 Aminotransferase class-III HIN88_05105 PF00849 RNA pseudouridylate synthase HIN88_05110 PF12137 RNA polymerase recycling family C-terminal HIN88_05110 PF18337 RapA N-terminal Tudor like domain HIN88_05110 PF00176 SNF2 family N-terminal domain HIN88_05110 PF18339 RapA N-terminal Tudor like domain 1 HIN88_05110 PF00271 Helicase conserved C-terminal domain HIN88_05120 PF00440 Bacterial regulatory proteins, tetR family HIN88_05125 PF00970 Oxidoreductase FAD-binding domain HIN88_05125 PF00175 Oxidoreductase NAD-binding domain HIN88_05125 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_05130 PF00487 Fatty acid desaturase HIN88_05140 PF17754 MftR C-terminal domain HIN88_05140 PF00440 Bacterial regulatory proteins, tetR family HIN88_05150 PF00202 Aminotransferase class-III HIN88_05155 PF00282 Pyridoxal-dependent decarboxylase conserved domain HIN88_05160 PF00171 Aldehyde dehydrogenase family HIN88_05165 PF01037 Lrp/AsnC ligand binding domain HIN88_05170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HIN88_05170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HIN88_05170 PF00205 Thiamine pyrophosphate enzyme, central domain HIN88_05175 PF00324 Amino acid permease HIN88_05180 PF12849 PBP superfamily domain HIN88_05185 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_05190 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_05195 PF00005 ABC transporter HIN88_05200 PF08496 Peptidase family S49 N-terminal HIN88_05200 PF01343 Peptidase family S49 HIN88_05215 PF08328 Adenylosuccinate lyase C-terminal HIN88_05215 PF00206 Lyase HIN88_05220 PF04356 Protein of unknown function (DUF489) HIN88_05230 PF13344 Haloacid dehalogenase-like hydrolase HIN88_05230 PF00293 NUDIX domain HIN88_05235 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_05240 PF07943 Penicillin-binding protein 5, C-terminal domain HIN88_05240 PF00768 D-alanyl-D-alanine carboxypeptidase HIN88_05255 PF01975 Survival protein SurE HIN88_05260 PF01551 Peptidase family M23 HIN88_05260 PF01476 LysM domain HIN88_05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_05265 PF03466 LysR substrate binding domain HIN88_05270 PF05362 Lon protease (S16) C-terminal proteolytic domain HIN88_05270 PF13654 AAA domain HIN88_05275 PF07690 Major Facilitator Superfamily HIN88_05280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HIN88_05285 PF13593 SBF-like CPA transporter family (DUF4137) HIN88_05290 PF01197 Ribosomal protein L31 HIN88_05295 PF12792 CSS motif domain associated with EAL HIN88_05295 PF00563 EAL domain HIN88_05305 PF04055 Radical SAM superfamily HIN88_05310 PF09285 Elongation factor P, C-terminal HIN88_05310 PF08207 Elongation factor P (EF-P) KOW-like domain HIN88_05310 PF01132 Elongation factor P (EF-P) OB domain HIN88_05315 PF02554 Carbon starvation protein CstA HIN88_05315 PF13722 5TM C-terminal transporter carbon starvation CstA HIN88_05320 PF04328 Selenoprotein, putative HIN88_05350 PF17954 Quercetinase C-terminal cupin domain HIN88_05350 PF02678 Pirin HIN88_05355 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_05360 PF08348 YheO-like PAS domain HIN88_05360 PF13309 HTH domain HIN88_05370 PF00501 AMP-binding enzyme HIN88_05370 PF13193 AMP-binding enzyme C-terminal domain HIN88_05370 PF00668 Condensation domain HIN88_05370 PF00550 Phosphopantetheine attachment site HIN88_05375 PF00975 Thioesterase domain HIN88_05375 PF00550 Phosphopantetheine attachment site HIN88_05375 PF00668 Condensation domain HIN88_05375 PF13193 AMP-binding enzyme C-terminal domain HIN88_05375 PF00501 AMP-binding enzyme HIN88_05380 PF01032 FecCD transport family HIN88_05385 PF01032 FecCD transport family HIN88_05390 PF00005 ABC transporter HIN88_05395 PF01497 Periplasmic binding protein HIN88_05400 PF07715 TonB-dependent Receptor Plug Domain HIN88_05400 PF00593 TonB dependent receptor HIN88_05405 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) HIN88_05410 PF00501 AMP-binding enzyme HIN88_05410 PF00668 Condensation domain HIN88_05410 PF00550 Phosphopantetheine attachment site HIN88_05415 PF00501 AMP-binding enzyme HIN88_05415 PF13193 AMP-binding enzyme C-terminal domain HIN88_05420 PF00550 Phosphopantetheine attachment site HIN88_05420 PF00857 Isochorismatase family HIN88_05425 PF00282 Pyridoxal-dependent decarboxylase conserved domain HIN88_05435 PF00664 ABC transporter transmembrane region HIN88_05435 PF00005 ABC transporter HIN88_05440 PF00005 ABC transporter HIN88_05440 PF00664 ABC transporter transmembrane region HIN88_05445 PF00975 Thioesterase domain HIN88_05455 PF00425 chorismate binding enzyme HIN88_05465 PF01208 Uroporphyrinogen decarboxylase (URO-D) HIN88_05470 PF05675 Protein of unknown function (DUF817) HIN88_05485 PF00144 Beta-lactamase HIN88_05495 PF01799 [2Fe-2S] binding domain HIN88_05495 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_05500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HIN88_05500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HIN88_05515 PF00218 Indole-3-glycerol phosphate synthase HIN88_05520 PF02885 Glycosyl transferase family, helical bundle domain HIN88_05520 PF00591 Glycosyl transferase family, a/b domain HIN88_05525 PF07715 TonB-dependent Receptor Plug Domain HIN88_05525 PF00593 TonB dependent receptor HIN88_05530 PF01433 Peptidase family M1 domain HIN88_05530 PF11838 ERAP1-like C-terminal domain HIN88_05535 PF00117 Glutamine amidotransferase class-I HIN88_05545 PF00854 POT family HIN88_05550 PF00120 Glutamine synthetase, catalytic domain HIN88_05550 PF03951 Glutamine synthetase, beta-Grasp domain HIN88_05555 PF04345 Chorismate lyase HIN88_05560 PF01040 UbiA prenyltransferase family HIN88_05595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HIN88_05595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HIN88_05600 PF01784 NIF3 (NGG1p interacting factor 3) HIN88_05605 PF13180 PDZ domain HIN88_05610 PF12627 Probable RNA and SrmB- binding site of polymerase A HIN88_05610 PF01743 Poly A polymerase head domain HIN88_05615 PF01515 Phosphate acetyl/butaryl transferase HIN88_05615 PF03949 Malic enzyme, NAD binding domain HIN88_05615 PF00390 Malic enzyme, N-terminal domain HIN88_05620 PF03707 Bacterial signalling protein N terminal repeat HIN88_05620 PF00990 Diguanylate cyclase, GGDEF domain HIN88_05620 PF00563 EAL domain HIN88_05625 PF04452 RNA methyltransferase HIN88_05630 PF02219 Methylenetetrahydrofolate reductase HIN88_05635 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain HIN88_05635 PF05221 S-adenosyl-L-homocysteine hydrolase HIN88_05650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_05650 PF09317 Domain of unknown function (DUF1974) HIN88_05650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_05655 PF04055 Radical SAM superfamily HIN88_05660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HIN88_05660 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_05670 PF07690 Major Facilitator Superfamily HIN88_05680 PF00557 Metallopeptidase family M24 HIN88_05685 PF00318 Ribosomal protein S2 HIN88_05690 PF00889 Elongation factor TS HIN88_05700 PF12833 Helix-turn-helix domain HIN88_05720 PF05036 Sporulation related domain HIN88_05720 PF03330 Lytic transglycolase HIN88_05725 PF13406 Transglycosylase SLT domain HIN88_05730 PF01098 Cell cycle protein HIN88_05740 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HIN88_05740 PF14489 QueF-like protein HIN88_05745 PF01061 ABC-2 type transporter HIN88_05750 PF00005 ABC transporter HIN88_05775 PF00464 Serine hydroxymethyltransferase HIN88_05780 PF02321 Outer membrane efflux protein HIN88_05785 PF00873 AcrB/AcrD/AcrF family HIN88_05790 PF13533 Biotin-lipoyl like HIN88_05795 PF03466 LysR substrate binding domain HIN88_05795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_05800 PF00497 Bacterial extracellular solute-binding proteins, family 3 HIN88_05805 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_05810 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_05815 PF00005 ABC transporter HIN88_05820 PF00893 Small Multidrug Resistance protein HIN88_05825 PF00037 4Fe-4S binding domain HIN88_05835 PF00392 Bacterial regulatory proteins, gntR family HIN88_05835 PF00155 Aminotransferase class I and II HIN88_05840 PF02567 Phenazine biosynthesis-like protein HIN88_05845 PF00175 Oxidoreductase NAD-binding domain HIN88_05845 PF00970 Oxidoreductase FAD-binding domain HIN88_05850 PF01980 tRNA-methyltransferase O HIN88_05850 PF18389 TrmO C-terminal domain HIN88_05860 PF00437 Type II/IV secretion system protein HIN88_05870 PF00486 Transcriptional regulatory protein, C terminal HIN88_05870 PF00072 Response regulator receiver domain HIN88_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_05875 PF08521 Two-component sensor kinase N-terminal HIN88_05875 PF00512 His Kinase A (phospho-acceptor) domain HIN88_05885 PF00293 NUDIX domain HIN88_05895 PF00905 Penicillin binding protein transpeptidase domain HIN88_05895 PF14814 Bifunctional transglycosylase second domain HIN88_05895 PF00912 Transglycosylase HIN88_05900 PF01513 ATP-NAD kinase HIN88_05905 PF07023 Protein of unknown function (DUF1315) HIN88_05910 PF00591 Glycosyl transferase family, a/b domain HIN88_05910 PF02885 Glycosyl transferase family, helical bundle domain HIN88_05915 PF00375 Sodium:dicarboxylate symporter family HIN88_05920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_05920 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_05920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_05925 PF00756 Putative esterase HIN88_05930 PF00800 Prephenate dehydratase HIN88_05930 PF01842 ACT domain HIN88_05930 PF01817 Chorismate mutase type II HIN88_05935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HIN88_05945 PF01546 Peptidase family M20/M25/M40 HIN88_05945 PF07687 Peptidase dimerisation domain HIN88_05950 PF00753 Metallo-beta-lactamase superfamily HIN88_05960 PF03883 Peroxide stress protein YaaA HIN88_05970 PF05690 Thiazole biosynthesis protein ThiG HIN88_05980 PF04241 Protein of unknown function (DUF423) HIN88_05985 PF04542 Sigma-70 region 2 HIN88_05985 PF00140 Sigma-70 factor, region 1.2 HIN88_05985 PF04545 Sigma-70, region 4 HIN88_05995 PF00313 'Cold-shock' DNA-binding domain HIN88_06000 PF00270 DEAD/DEAH box helicase HIN88_06000 PF00271 Helicase conserved C-terminal domain HIN88_06010 PF00881 Nitroreductase family HIN88_06015 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HIN88_06015 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HIN88_06035 PF01180 Dihydroorotate dehydrogenase HIN88_06040 PF02674 Colicin V production protein HIN88_06045 PF00156 Phosphoribosyl transferase domain HIN88_06060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HIN88_06060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HIN88_06065 PF01435 Peptidase family M48 HIN88_06070 PF09424 Yqey-like protein HIN88_06075 PF01165 Ribosomal protein S21 HIN88_06080 PF00814 Glycoprotease family HIN88_06100 PF00069 Protein kinase domain HIN88_06100 PF03793 PASTA domain HIN88_06125 PF17287 POTRA domain HIN88_06125 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HIN88_06125 PF08479 POTRA domain, ShlB-type HIN88_06200 PF03466 LysR substrate binding domain HIN88_06200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_06205 PF00202 Aminotransferase class-III HIN88_06210 PF00171 Aldehyde dehydrogenase family HIN88_06215 PF00324 Amino acid permease HIN88_06245 PF04076 Bacterial OB fold (BOF) protein HIN88_06275 PF03616 Sodium/glutamate symporter HIN88_06285 PF00392 Bacterial regulatory proteins, gntR family HIN88_06285 PF07729 FCD domain HIN88_06365 PF04403 Paraquat-inducible protein A HIN88_06370 PF02470 MlaD protein HIN88_06380 PF00576 HIUase/Transthyretin family HIN88_06390 PF00486 Transcriptional regulatory protein, C terminal HIN88_06390 PF00072 Response regulator receiver domain HIN88_06395 PF00512 His Kinase A (phospho-acceptor) domain HIN88_06395 PF00672 HAMP domain HIN88_06395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_06435 PF08521 Two-component sensor kinase N-terminal HIN88_06435 PF00512 His Kinase A (phospho-acceptor) domain HIN88_06440 PF00486 Transcriptional regulatory protein, C terminal HIN88_06440 PF00072 Response regulator receiver domain HIN88_06460 PF01177 Asp/Glu/Hydantoin racemase HIN88_06465 PF00892 EamA-like transporter family HIN88_06470 PF07995 Glucose / Sorbosone dehydrogenase HIN88_06490 PF00375 Sodium:dicarboxylate symporter family HIN88_06500 PF16123 Hydroxyacylglutathione hydrolase C-terminus HIN88_06500 PF00753 Metallo-beta-lactamase superfamily HIN88_06505 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_06510 PF09383 NIL domain HIN88_06510 PF00005 ABC transporter HIN88_06515 PF03180 NLPA lipoprotein HIN88_06520 PF02843 Phosphoribosylglycinamide synthetase, C domain HIN88_06520 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HIN88_06520 PF02844 Phosphoribosylglycinamide synthetase, N domain HIN88_06525 PF02142 MGS-like domain HIN88_06525 PF01808 AICARFT/IMPCHase bienzyme HIN88_06530 PF02954 Bacterial regulatory protein, Fis family HIN88_06550 PF13932 GidA associated domain HIN88_06550 PF01134 Glucose inhibited division protein A HIN88_06560 PF14403 Circularly permuted ATP-grasp type 2 HIN88_06570 PF01841 Transglutaminase-like superfamily HIN88_06570 PF08379 Bacterial transglutaminase-like N-terminal region HIN88_06580 PF01168 Alanine racemase, N-terminal domain HIN88_06580 PF00842 Alanine racemase, C-terminal domain HIN88_06585 PF00772 DnaB-like helicase N terminal domain HIN88_06585 PF03796 DnaB-like helicase C terminal domain HIN88_06590 PF03948 Ribosomal protein L9, C-terminal domain HIN88_06590 PF01281 Ribosomal protein L9, N-terminal domain HIN88_06595 PF01084 Ribosomal protein S18 HIN88_06600 PF01250 Ribosomal protein S6 HIN88_06605 PF01040 UbiA prenyltransferase family HIN88_06610 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HIN88_06615 PF00510 Cytochrome c oxidase subunit III HIN88_06620 PF00115 Cytochrome C and Quinol oxidase polypeptide I HIN88_06625 PF06481 COX Aromatic Rich Motif HIN88_06625 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HIN88_06635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HIN88_06635 PF00391 PEP-utilising enzyme, mobile domain HIN88_06635 PF02896 PEP-utilising enzyme, TIM barrel domain HIN88_06640 PF03618 Kinase/pyrophosphorylase HIN88_06650 PF14883 Hypothetical glycosyl hydrolase family 13 HIN88_06650 PF01522 Polysaccharide deacetylase HIN88_06655 PF00535 Glycosyl transferase family 2 HIN88_06660 PF13994 PgaD-like protein HIN88_06670 PF00296 Luciferase-like monooxygenase HIN88_06695 PF00472 RF-1 domain HIN88_06695 PF03462 PCRF domain HIN88_06700 PF17827 PrmC N-terminal domain HIN88_06700 PF13847 Methyltransferase domain HIN88_06705 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_06710 PF09084 NMT1/THI5 like HIN88_06715 PF12833 Helix-turn-helix domain HIN88_06720 PF00106 short chain dehydrogenase HIN88_06725 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_06725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_06725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_06730 PF00501 AMP-binding enzyme HIN88_06730 PF13193 AMP-binding enzyme C-terminal domain HIN88_06735 PF01613 Flavin reductase like domain HIN88_06740 PF00899 ThiF family HIN88_06745 PF03109 ABC1 family HIN88_06760 PF03814 Potassium-transporting ATPase A subunit HIN88_06770 PF02669 K+-transporting ATPase, c chain HIN88_06775 PF13493 Domain of unknown function (DUF4118) HIN88_06775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_06775 PF00512 His Kinase A (phospho-acceptor) domain HIN88_06775 PF02702 Osmosensitive K+ channel His kinase sensor domain HIN88_06780 PF00072 Response regulator receiver domain HIN88_06780 PF00486 Transcriptional regulatory protein, C terminal HIN88_06785 PF00120 Glutamine synthetase, catalytic domain HIN88_06795 PF03232 Ubiquinone biosynthesis protein COQ7 HIN88_06800 PF07690 Major Facilitator Superfamily HIN88_06805 PF01103 Surface antigen HIN88_06805 PF17243 POTRA domain TamA domain 1 HIN88_06805 PF07244 Surface antigen variable number repeat HIN88_06820 PF00330 Aconitase family (aconitate hydratase) HIN88_06820 PF06434 Aconitate hydratase 2 N-terminus HIN88_06820 PF11791 Aconitate B N-terminal domain HIN88_06830 PF00520 Ion transport protein HIN88_06830 PF00027 Cyclic nucleotide-binding domain HIN88_06835 PF07690 Major Facilitator Superfamily HIN88_06850 PF03466 LysR substrate binding domain HIN88_06850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_06855 PF04284 Protein of unknown function (DUF441) HIN88_06865 PF00849 RNA pseudouridylate synthase HIN88_06865 PF01479 S4 domain HIN88_06880 PF01479 S4 domain HIN88_06880 PF00849 RNA pseudouridylate synthase HIN88_06885 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HIN88_06890 PF08676 MutL C terminal dimerisation domain HIN88_06890 PF01119 DNA mismatch repair protein, C-terminal domain HIN88_06900 PF17209 Hfq protein HIN88_06910 PF00881 Nitroreductase family HIN88_06920 PF00149 Calcineurin-like phosphoesterase HIN88_06925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HIN88_06930 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HIN88_06930 PF00749 tRNA synthetases class I (E and Q), catalytic domain HIN88_06935 PF00958 GMP synthase C terminal domain HIN88_06935 PF02540 NAD synthase HIN88_06935 PF00117 Glutamine amidotransferase class-I HIN88_06940 PF05985 Ethanolamine ammonia-lyase light chain (EutC) HIN88_06945 PF06751 Ethanolamine ammonia lyase large subunit (EutB) HIN88_06950 PF13520 Amino acid permease HIN88_06955 PF00171 Aldehyde dehydrogenase family HIN88_06970 PF00465 Iron-containing alcohol dehydrogenase HIN88_06975 PF14493 Helix-turn-helix domain HIN88_06975 PF05970 PIF1-like helicase HIN88_06985 PF06445 GyrI-like small molecule binding domain HIN88_06990 PF02110 Hydroxyethylthiazole kinase family HIN88_07005 PF11940 Domain of unknown function (DUF3458) Ig-like fold HIN88_07005 PF01433 Peptidase family M1 domain HIN88_07005 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HIN88_07020 PF00577 Outer membrane usher protein HIN88_07020 PF13954 PapC N-terminal domain HIN88_07020 PF13953 PapC C-terminal domain HIN88_07045 PF01817 Chorismate mutase type II HIN88_07050 PF01037 Lrp/AsnC ligand binding domain HIN88_07060 PF00440 Bacterial regulatory proteins, tetR family HIN88_07065 PF00593 TonB dependent receptor HIN88_07065 PF07715 TonB-dependent Receptor Plug Domain HIN88_07070 PF00924 Mechanosensitive ion channel HIN88_07100 PF07715 TonB-dependent Receptor Plug Domain HIN88_07100 PF00593 TonB dependent receptor HIN88_07120 PF12848 ABC transporter HIN88_07120 PF00005 ABC transporter HIN88_07125 PF00582 Universal stress protein family HIN88_07150 PF00689 Cation transporting ATPase, C-terminus HIN88_07150 PF00690 Cation transporter/ATPase, N-terminus HIN88_07155 PF02308 MgtC family HIN88_07160 PF03594 Benzoate membrane transport protein HIN88_07165 PF01037 Lrp/AsnC ligand binding domain HIN88_07170 PF01810 LysE type translocator HIN88_07175 PF00923 Transaldolase/Fructose-6-phosphate aldolase HIN88_07180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_07180 PF03466 LysR substrate binding domain HIN88_07190 PF02803 Thiolase, C-terminal domain HIN88_07190 PF00108 Thiolase, N-terminal domain HIN88_07200 PF01575 MaoC like domain HIN88_07215 PF07690 Major Facilitator Superfamily HIN88_07220 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HIN88_07220 PF12170 DNA polymerase III tau subunit V interacting with alpha HIN88_07220 PF12169 DNA polymerase III subunits gamma and tau domain III HIN88_07225 PF05506 Domain of unknown function (DUF756) HIN88_07225 PF04185 Phosphoesterase family HIN88_07230 PF03061 Thioesterase superfamily HIN88_07235 PF00465 Iron-containing alcohol dehydrogenase HIN88_07245 PF01451 Low molecular weight phosphotyrosine protein phosphatase HIN88_07250 PF01565 FAD binding domain HIN88_07250 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HIN88_07265 PF01645 Conserved region in glutamate synthase HIN88_07285 PF12832 MFS_1 like family HIN88_07295 PF02785 Biotin carboxylase C-terminal domain HIN88_07295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HIN88_07295 PF00289 Biotin carboxylase, N-terminal domain HIN88_07300 PF00364 Biotin-requiring enzyme HIN88_07305 PF01220 Dehydroquinase class II HIN88_07310 PF13438 Domain of unknown function (DUF4113) HIN88_07310 PF00817 impB/mucB/samB family HIN88_07310 PF11799 impB/mucB/samB family C-terminal domain HIN88_07320 PF00005 ABC transporter HIN88_07325 PF00072 Response regulator receiver domain HIN88_07325 PF00486 Transcriptional regulatory protein, C terminal HIN88_07335 PF18267 Rubredoxin NAD+ reductase C-terminal domain HIN88_07335 PF04324 BFD-like [2Fe-2S] binding domain HIN88_07335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HIN88_07335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HIN88_07335 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_07335 PF13806 Rieske-like [2Fe-2S] domain HIN88_07340 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_07340 PF04324 BFD-like [2Fe-2S] binding domain HIN88_07340 PF18267 Rubredoxin NAD+ reductase C-terminal domain HIN88_07340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HIN88_07340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HIN88_07345 PF04324 BFD-like [2Fe-2S] binding domain HIN88_07345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HIN88_07345 PF00384 Molybdopterin oxidoreductase HIN88_07345 PF01568 Molydopterin dinucleotide binding domain HIN88_07350 PF12804 MobA-like NTP transferase domain HIN88_07355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HIN88_07355 PF00384 Molybdopterin oxidoreductase HIN88_07355 PF01568 Molydopterin dinucleotide binding domain HIN88_07360 PF04055 Radical SAM superfamily HIN88_07360 PF06463 Molybdenum Cofactor Synthesis C HIN88_07370 PF02391 MoaE protein HIN88_07375 PF01967 MoaC family HIN88_07375 PF00994 Probable molybdopterin binding domain HIN88_07380 PF03454 MoeA C-terminal region (domain IV) HIN88_07380 PF03453 MoeA N-terminal region (domain I and II) HIN88_07380 PF00994 Probable molybdopterin binding domain HIN88_07385 PF01638 HxlR-like helix-turn-helix HIN88_07395 PF00892 EamA-like transporter family HIN88_07415 PF02635 DsrE/DsrF-like family HIN88_07420 PF16363 GDP-mannose 4,6 dehydratase HIN88_07425 PF00206 Lyase HIN88_07425 PF10415 Fumarase C C-terminus HIN88_07445 PF01266 FAD dependent oxidoreductase HIN88_07455 PF02542 YgbB family HIN88_07465 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HIN88_07465 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HIN88_07470 PF00440 Bacterial regulatory proteins, tetR family HIN88_07475 PF00072 Response regulator receiver domain HIN88_07475 PF02954 Bacterial regulatory protein, Fis family HIN88_07475 PF00158 Sigma-54 interaction domain HIN88_07480 PF00989 PAS fold HIN88_07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_07480 PF00512 His Kinase A (phospho-acceptor) domain HIN88_07485 PF00919 Uncharacterized protein family UPF0004 HIN88_07485 PF18693 TRAM domain HIN88_07485 PF04055 Radical SAM superfamily HIN88_07490 PF00696 Amino acid kinase family HIN88_07495 PF01765 Ribosome recycling factor HIN88_07500 PF01255 Putative undecaprenyl diphosphate synthase HIN88_07510 PF13288 DXP reductoisomerase C-terminal domain HIN88_07510 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HIN88_07510 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HIN88_07515 PF02163 Peptidase family M50 HIN88_07515 PF13180 PDZ domain HIN88_07515 PF17820 PDZ domain HIN88_07520 PF01103 Surface antigen HIN88_07520 PF07244 Surface antigen variable number repeat HIN88_07530 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_07530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HIN88_07535 PF07977 FabA-like domain HIN88_07540 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_07540 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HIN88_07555 PF02631 RecX family HIN88_07560 PF00154 recA bacterial DNA recombination protein HIN88_07565 PF01479 S4 domain HIN88_07570 PF13419 Haloacid dehalogenase-like hydrolase HIN88_07595 PF01037 Lrp/AsnC ligand binding domain HIN88_07600 PF00266 Aminotransferase class-V HIN88_07605 PF00324 Amino acid permease HIN88_07615 PF05922 Peptidase inhibitor I9 HIN88_07615 PF00082 Subtilase family HIN88_07620 PF00916 Sulfate permease family HIN88_07620 PF01740 STAS domain HIN88_07625 PF02586 SOS response associated peptidase (SRAP) HIN88_07630 PF07995 Glucose / Sorbosone dehydrogenase HIN88_07640 PF00990 Diguanylate cyclase, GGDEF domain HIN88_07640 PF00563 EAL domain HIN88_07640 PF03707 Bacterial signalling protein N terminal repeat HIN88_07655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HIN88_07655 PF02378 Phosphotransferase system, EIIC HIN88_07660 PF00294 pfkB family carbohydrate kinase HIN88_07665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HIN88_07665 PF00381 PTS HPr component phosphorylation site HIN88_07665 PF00391 PEP-utilising enzyme, mobile domain HIN88_07665 PF02896 PEP-utilising enzyme, TIM barrel domain HIN88_07665 PF05524 PEP-utilising enzyme, N-terminal HIN88_07690 PF05525 Branched-chain amino acid transport protein HIN88_07695 PF00557 Metallopeptidase family M24 HIN88_07700 PF03466 LysR substrate binding domain HIN88_07700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_07710 PF00462 Glutaredoxin HIN88_07715 PF00202 Aminotransferase class-III HIN88_07720 PF00478 IMP dehydrogenase / GMP reductase domain HIN88_07720 PF00571 CBS domain HIN88_07745 PF00448 SRP54-type protein, GTPase domain HIN88_07745 PF02881 SRP54-type protein, helical bundle domain HIN88_07755 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HIN88_07770 PF08173 Membrane bound YbgT-like protein HIN88_07775 PF02322 Cytochrome bd terminal oxidase subunit II HIN88_07780 PF01654 Cytochrome bd terminal oxidase subunit I HIN88_07790 PF07290 Protein of unknown function (DUF1449) HIN88_07800 PF00294 pfkB family carbohydrate kinase HIN88_07805 PF00593 TonB dependent receptor HIN88_07805 PF07715 TonB-dependent Receptor Plug Domain HIN88_07810 PF08367 Peptidase M16C associated HIN88_07810 PF00675 Insulinase (Peptidase family M16) HIN88_07810 PF05193 Peptidase M16 inactive domain HIN88_07815 PF02253 Phospholipase A1 HIN88_07820 PF02386 Cation transport protein HIN88_07825 PF02254 TrkA-N domain HIN88_07825 PF02080 TrkA-C domain HIN88_07830 PF00585 C-terminal regulatory domain of Threonine dehydratase HIN88_07830 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_07835 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HIN88_07850 PF01118 Semialdehyde dehydrogenase, NAD binding domain HIN88_07850 PF02774 Semialdehyde dehydrogenase, dimerisation domain HIN88_07860 PF02617 ATP-dependent Clp protease adaptor protein ClpS HIN88_07865 PF00004 ATPase family associated with various cellular activities (AAA) HIN88_07865 PF07724 AAA domain (Cdc48 subfamily) HIN88_07865 PF17871 AAA lid domain HIN88_07865 PF02861 Clp amino terminal domain, pathogenicity island component HIN88_07865 PF10431 C-terminal, D2-small domain, of ClpB protein HIN88_07870 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HIN88_07875 PF00793 DAHP synthetase I family HIN88_07890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HIN88_07890 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_07920 PF00117 Glutamine amidotransferase class-I HIN88_07920 PF06418 CTP synthase N-terminus HIN88_07925 PF00793 DAHP synthetase I family HIN88_07930 PF03952 Enolase, N-terminal domain HIN88_07930 PF00113 Enolase, C-terminal TIM barrel domain HIN88_07935 PF04239 Protein of unknown function (DUF421) HIN88_07940 PF04977 Septum formation initiator HIN88_07945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HIN88_07950 PF01144 Coenzyme A transferase HIN88_07955 PF01144 Coenzyme A transferase HIN88_07960 PF00108 Thiolase, N-terminal domain HIN88_07960 PF02803 Thiolase, C-terminal domain HIN88_07965 PF10397 Adenylosuccinate lyase C-terminus HIN88_07965 PF00206 Lyase HIN88_07970 PF00561 alpha/beta hydrolase fold HIN88_07975 PF07690 Major Facilitator Superfamily HIN88_07980 PF02627 Carboxymuconolactone decarboxylase family HIN88_07985 PF00775 Dioxygenase HIN88_07985 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal HIN88_07990 PF00775 Dioxygenase HIN88_07995 PF01487 Type I 3-dehydroquinase HIN88_08000 PF05048 Periplasmic copper-binding protein (NosD) HIN88_08005 PF04966 Carbohydrate-selective porin, OprB family HIN88_08010 PF13360 PQQ-like domain HIN88_08010 PF01011 PQQ enzyme repeat HIN88_08020 PF04143 Sulphur transport HIN88_08030 PF00753 Metallo-beta-lactamase superfamily HIN88_08035 PF01614 Bacterial transcriptional regulator HIN88_08035 PF09339 IclR helix-turn-helix domain HIN88_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_08040 PF03466 LysR substrate binding domain HIN88_08045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_08045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_08045 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_08060 PF00106 short chain dehydrogenase HIN88_08070 PF07690 Major Facilitator Superfamily HIN88_08080 PF01425 Amidase HIN88_08085 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HIN88_08100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HIN88_08100 PF00355 Rieske [2Fe-2S] domain HIN88_08115 PF00175 Oxidoreductase NAD-binding domain HIN88_08115 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_08120 PF01613 Flavin reductase like domain HIN88_08125 PF12833 Helix-turn-helix domain HIN88_08125 PF02311 AraC-like ligand binding domain HIN88_08130 PF07833 Copper amine oxidase N-terminal domain HIN88_08130 PF02727 Copper amine oxidase, N2 domain HIN88_08130 PF01179 Copper amine oxidase, enzyme domain HIN88_08130 PF02728 Copper amine oxidase, N3 domain HIN88_08140 PF00171 Aldehyde dehydrogenase family HIN88_08145 PF12146 Serine aminopeptidase, S33 HIN88_08150 PF02803 Thiolase, C-terminal domain HIN88_08150 PF00108 Thiolase, N-terminal domain HIN88_08155 PF01144 Coenzyme A transferase HIN88_08160 PF01144 Coenzyme A transferase HIN88_08165 PF00775 Dioxygenase HIN88_08165 PF04444 Catechol dioxygenase N terminus HIN88_08170 PF02426 Muconolactone delta-isomerase HIN88_08175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain HIN88_08175 PF13378 Enolase C-terminal domain-like HIN88_08180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_08180 PF03466 LysR substrate binding domain HIN88_08190 PF00392 Bacterial regulatory proteins, gntR family HIN88_08190 PF07729 FCD domain HIN88_08195 PF00920 Dehydratase family HIN88_08200 PF07690 Major Facilitator Superfamily HIN88_08210 PF00171 Aldehyde dehydrogenase family HIN88_08215 PF01636 Phosphotransferase enzyme family HIN88_08230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_08230 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_08230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_08240 PF02954 Bacterial regulatory protein, Fis family HIN88_08240 PF06506 Propionate catabolism activator HIN88_08240 PF00158 Sigma-54 interaction domain HIN88_08245 PF00501 AMP-binding enzyme HIN88_08245 PF13193 AMP-binding enzyme C-terminal domain HIN88_08250 PF04341 Protein of unknown function, DUF485 HIN88_08255 PF00474 Sodium:solute symporter family HIN88_08260 PF00107 Zinc-binding dehydrogenase HIN88_08260 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_08265 PF00171 Aldehyde dehydrogenase family HIN88_08275 PF00561 alpha/beta hydrolase fold HIN88_08280 PF06628 Catalase-related immune-responsive HIN88_08280 PF00199 Catalase HIN88_08300 PF07859 alpha/beta hydrolase fold HIN88_08305 PF01047 MarR family HIN88_08310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HIN88_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_08315 PF00106 short chain dehydrogenase HIN88_08320 PF01872 RibD C-terminal domain HIN88_08325 PF00376 MerR family regulatory protein HIN88_08325 PF09278 MerR, DNA binding HIN88_08335 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_08345 PF12706 Beta-lactamase superfamily domain HIN88_08350 PF00440 Bacterial regulatory proteins, tetR family HIN88_08350 PF08359 YsiA-like protein, C-terminal region HIN88_08355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_08355 PF03466 LysR substrate binding domain HIN88_08370 PF00106 short chain dehydrogenase HIN88_08375 PF01575 MaoC like domain HIN88_08380 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_08380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_08380 PF12806 Acetyl-CoA dehydrogenase C-terminal like HIN88_08380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_08390 PF00501 AMP-binding enzyme HIN88_08390 PF13193 AMP-binding enzyme C-terminal domain HIN88_08440 PF07690 Major Facilitator Superfamily HIN88_08445 PF04909 Amidohydrolase HIN88_08455 PF07702 UTRA domain HIN88_08455 PF00392 Bacterial regulatory proteins, gntR family HIN88_08460 PF08450 SMP-30/Gluconolactonase/LRE-like region HIN88_08470 PF03466 LysR substrate binding domain HIN88_08470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_08490 PF07690 Major Facilitator Superfamily HIN88_08495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HIN88_08495 PF01842 ACT domain HIN88_08495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HIN88_08500 PF03737 Aldolase/RraA HIN88_08510 PF00529 HlyD membrane-fusion protein of T1SS HIN88_08510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_08525 PF00171 Aldehyde dehydrogenase family HIN88_08530 PF00920 Dehydratase family HIN88_08540 PF03466 LysR substrate binding domain HIN88_08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_08545 PF01370 NAD dependent epimerase/dehydratase family HIN88_08550 PF07690 Major Facilitator Superfamily HIN88_08555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HIN88_08555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HIN88_08560 PF06719 AraC-type transcriptional regulator N-terminus HIN88_08560 PF12833 Helix-turn-helix domain HIN88_08565 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_08565 PF00107 Zinc-binding dehydrogenase HIN88_08580 PF00005 ABC transporter HIN88_08600 PF14572 Phosphoribosyl synthetase-associated domain HIN88_08600 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HIN88_08605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HIN88_08620 PF13533 Biotin-lipoyl like HIN88_08625 PF07690 Major Facilitator Superfamily HIN88_08650 PF01975 Survival protein SurE HIN88_08660 PF13291 ACT domain HIN88_08660 PF04607 Region found in RelA / SpoT proteins HIN88_08660 PF02824 TGS domain HIN88_08680 PF05970 PIF1-like helicase HIN88_08680 PF02689 Helicase HIN88_08715 PF12146 Serine aminopeptidase, S33 HIN88_08720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_08720 PF03466 LysR substrate binding domain HIN88_08725 PF01266 FAD dependent oxidoreductase HIN88_08750 PF02321 Outer membrane efflux protein HIN88_08755 PF00873 AcrB/AcrD/AcrF family HIN88_08760 PF00529 HlyD membrane-fusion protein of T1SS HIN88_08760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_08765 PF00072 Response regulator receiver domain HIN88_08765 PF00486 Transcriptional regulatory protein, C terminal HIN88_08770 PF00512 His Kinase A (phospho-acceptor) domain HIN88_08770 PF00672 HAMP domain HIN88_08770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_08780 PF12146 Serine aminopeptidase, S33 HIN88_08785 PF00743 Flavin-binding monooxygenase-like HIN88_08865 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HIN88_08870 PF13545 Crp-like helix-turn-helix domain HIN88_08870 PF00027 Cyclic nucleotide-binding domain HIN88_08875 PF00884 Sulfatase HIN88_08880 PF07715 TonB-dependent Receptor Plug Domain HIN88_08880 PF00593 TonB dependent receptor HIN88_08885 PF00248 Aldo/keto reductase family HIN88_08890 PF00296 Luciferase-like monooxygenase HIN88_08895 PF00593 TonB dependent receptor HIN88_08895 PF07715 TonB-dependent Receptor Plug Domain HIN88_08905 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HIN88_08915 PF02472 Biopolymer transport protein ExbD/TolR HIN88_08920 PF01618 MotA/TolQ/ExbB proton channel family HIN88_08925 PF03544 Gram-negative bacterial TonB protein C-terminal HIN88_08930 PF00005 ABC transporter HIN88_08935 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_08940 PF00296 Luciferase-like monooxygenase HIN88_08945 PF07715 TonB-dependent Receptor Plug Domain HIN88_08945 PF00593 TonB dependent receptor HIN88_08955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HIN88_08960 PF02472 Biopolymer transport protein ExbD/TolR HIN88_08965 PF01618 MotA/TolQ/ExbB proton channel family HIN88_08970 PF03544 Gram-negative bacterial TonB protein C-terminal HIN88_08975 PF00296 Luciferase-like monooxygenase HIN88_08980 PF09084 NMT1/THI5 like HIN88_08985 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_08990 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_08995 PF00005 ABC transporter HIN88_09000 PF02416 mttA/Hcf106 family HIN88_09005 PF02416 mttA/Hcf106 family HIN88_09010 PF00902 Sec-independent protein translocase protein (TatC) HIN88_09015 PF00158 Sigma-54 interaction domain HIN88_09020 PF00296 Luciferase-like monooxygenase HIN88_09030 PF00593 TonB dependent receptor HIN88_09030 PF07715 TonB-dependent Receptor Plug Domain HIN88_09040 PF00664 ABC transporter transmembrane region HIN88_09040 PF00005 ABC transporter HIN88_09045 PF00664 ABC transporter transmembrane region HIN88_09045 PF00005 ABC transporter HIN88_09055 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_09055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_09055 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HIN88_09060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HIN88_09060 PF00005 ABC transporter HIN88_09065 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_09065 PF12911 N-terminal TM domain of oligopeptide transport permease C HIN88_09070 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_09075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HIN88_09080 PF00296 Luciferase-like monooxygenase HIN88_09100 PF16970 Type-1 fimbrial protein, A HIN88_09105 PF02753 Pili assembly chaperone PapD, C-terminal domain HIN88_09105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HIN88_09110 PF13953 PapC C-terminal domain HIN88_09110 PF00577 Outer membrane usher protein HIN88_09110 PF13954 PapC N-terminal domain HIN88_09125 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_09125 PF00107 Zinc-binding dehydrogenase HIN88_09135 PF00199 Catalase HIN88_09150 PF13091 PLD-like domain HIN88_09170 PF01244 Membrane dipeptidase (Peptidase family M19) HIN88_09175 PF13186 Iron-sulfur cluster-binding domain HIN88_09175 PF04055 Radical SAM superfamily HIN88_09180 PF05402 Coenzyme PQQ synthesis protein D (PqqD) HIN88_09185 PF03070 TENA/THI-4/PQQC family HIN88_09190 PF12706 Beta-lactamase superfamily domain HIN88_09195 PF08042 PqqA family HIN88_09200 PF13089 Polyphosphate kinase N-terminal domain HIN88_09200 PF02503 Polyphosphate kinase middle domain HIN88_09200 PF13090 Polyphosphate kinase C-terminal domain 2 HIN88_09200 PF17941 Polyphosphate kinase C-terminal domain 1 HIN88_09205 PF00149 Calcineurin-like phosphoesterase HIN88_09215 PF00857 Isochorismatase family HIN88_09215 PF00550 Phosphopantetheine attachment site HIN88_09220 PF00106 short chain dehydrogenase HIN88_09225 PF03459 TOBE domain HIN88_09225 PF00005 ABC transporter HIN88_09230 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_09240 PF03459 TOBE domain HIN88_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_09245 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HIN88_09245 PF00355 Rieske [2Fe-2S] domain HIN88_09250 PF00866 Ring hydroxylating beta subunit HIN88_09255 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_09255 PF00175 Oxidoreductase NAD-binding domain HIN88_09255 PF00970 Oxidoreductase FAD-binding domain HIN88_09260 PF12833 Helix-turn-helix domain HIN88_09260 PF14525 AraC-binding-like domain HIN88_09270 PF01613 Flavin reductase like domain HIN88_09285 PF01738 Dienelactone hydrolase family HIN88_09290 PF07690 Major Facilitator Superfamily HIN88_09295 PF12833 Helix-turn-helix domain HIN88_09295 PF06719 AraC-type transcriptional regulator N-terminus HIN88_09315 PF03466 LysR substrate binding domain HIN88_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_09320 PF01144 Coenzyme A transferase HIN88_09325 PF01144 Coenzyme A transferase HIN88_09330 PF02667 Short chain fatty acid transporter HIN88_09335 PF02803 Thiolase, C-terminal domain HIN88_09335 PF00108 Thiolase, N-terminal domain HIN88_09340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_09340 PF03466 LysR substrate binding domain HIN88_09345 PF03466 LysR substrate binding domain HIN88_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_09360 PF00206 Lyase HIN88_09360 PF10415 Fumarase C C-terminus HIN88_09365 PF07715 TonB-dependent Receptor Plug Domain HIN88_09365 PF00593 TonB dependent receptor HIN88_09370 PF00083 Sugar (and other) transporter HIN88_09385 PF00005 ABC transporter HIN88_09390 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_09395 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HIN88_09410 PF00392 Bacterial regulatory proteins, gntR family HIN88_09410 PF07702 UTRA domain HIN88_09415 PF02417 Chromate transporter HIN88_09420 PF02525 Flavodoxin-like fold HIN88_09425 PF01638 HxlR-like helix-turn-helix HIN88_09430 PF06445 GyrI-like small molecule binding domain HIN88_09430 PF12833 Helix-turn-helix domain HIN88_09445 PF01925 Sulfite exporter TauE/SafE HIN88_09450 PF04273 Putative phosphatase (DUF442) HIN88_09450 PF00753 Metallo-beta-lactamase superfamily HIN88_09455 PF00753 Metallo-beta-lactamase superfamily HIN88_09455 PF04273 Putative phosphatase (DUF442) HIN88_09460 PF00158 Sigma-54 interaction domain HIN88_09460 PF00072 Response regulator receiver domain HIN88_09460 PF02954 Bacterial regulatory protein, Fis family HIN88_09465 PF01062 Bestrophin, RFP-TM, chloride channel HIN88_09470 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_09470 PF00107 Zinc-binding dehydrogenase HIN88_09475 PF00106 short chain dehydrogenase HIN88_09480 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_09480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HIN88_09485 PF00364 Biotin-requiring enzyme HIN88_09485 PF02817 e3 binding domain HIN88_09485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HIN88_09490 PF02779 Transketolase, pyrimidine binding domain HIN88_09490 PF02780 Transketolase, C-terminal domain HIN88_09495 PF00676 Dehydrogenase E1 component HIN88_09500 PF04055 Radical SAM superfamily HIN88_09515 PF08448 PAS fold HIN88_09515 PF00990 Diguanylate cyclase, GGDEF domain HIN88_09520 PF01264 Chorismate synthase HIN88_09525 PF05175 Methyltransferase small domain HIN88_09530 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_09540 PF17862 AAA+ lid domain HIN88_09540 PF00004 ATPase family associated with various cellular activities (AAA) HIN88_09540 PF01434 Peptidase family M41 HIN88_09550 PF05166 YcgL domain HIN88_09570 PF00570 HRDC domain HIN88_09570 PF01612 3'-5' exonuclease HIN88_09575 PF02132 RecR protein HIN88_09575 PF13662 Toprim domain HIN88_09580 PF02575 YbaB/EbfC DNA-binding family HIN88_09590 PF01053 Cys/Met metabolism PLP-dependent enzyme HIN88_09595 PF00561 alpha/beta hydrolase fold HIN88_09600 PF08241 Methyltransferase domain HIN88_09630 PF01230 HIT domain HIN88_09655 PF02684 Lipid-A-disaccharide synthetase HIN88_09660 PF00593 TonB dependent receptor HIN88_09660 PF07715 TonB-dependent Receptor Plug Domain HIN88_09680 PF01925 Sulfite exporter TauE/SafE HIN88_09685 PF00793 DAHP synthetase I family HIN88_09690 PF02654 Cobalamin-5-phosphate synthase HIN88_09700 PF00300 Histidine phosphatase superfamily (branch 1) HIN88_09705 PF02277 Phosphoribosyltransferase HIN88_09710 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase HIN88_09720 PF08125 Mannitol dehydrogenase C-terminal domain HIN88_09720 PF01232 Mannitol dehydrogenase Rossmann domain HIN88_09745 PF00593 TonB dependent receptor HIN88_09745 PF07715 TonB-dependent Receptor Plug Domain HIN88_09750 PF03737 Aldolase/RraA HIN88_09760 PF04183 IucA / IucC family HIN88_09760 PF06276 Ferric iron reductase FhuF-like transporter HIN88_09765 PF06276 Ferric iron reductase FhuF-like transporter HIN88_09765 PF04183 IucA / IucC family HIN88_09770 PF07690 Major Facilitator Superfamily HIN88_09775 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) HIN88_09780 PF04183 IucA / IucC family HIN88_09780 PF06276 Ferric iron reductase FhuF-like transporter HIN88_09785 PF04073 Aminoacyl-tRNA editing domain HIN88_09795 PF03109 ABC1 family HIN88_09800 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_09800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_09800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_09805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_09805 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_09805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_09810 PF00487 Fatty acid desaturase HIN88_09815 PF12852 Cupin HIN88_09815 PF12833 Helix-turn-helix domain HIN88_09820 PF00639 PPIC-type PPIASE domain HIN88_09820 PF09312 SurA N-terminal domain HIN88_09825 PF00216 Bacterial DNA-binding protein HIN88_09840 PF02082 Transcriptional regulator HIN88_09845 PF00266 Aminotransferase class-V HIN88_09850 PF01592 NifU-like N terminal domain HIN88_09855 PF01521 Iron-sulphur cluster biosynthesis HIN88_09860 PF07743 HSCB C-terminal oligomerisation domain HIN88_09860 PF00226 DnaJ domain HIN88_09865 PF00012 Hsp70 protein HIN88_09870 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_09875 PF00211 Adenylate and Guanylate cyclase catalytic domain HIN88_09885 PF02559 CarD-like/TRCF domain HIN88_09885 PF00270 DEAD/DEAH box helicase HIN88_09885 PF00271 Helicase conserved C-terminal domain HIN88_09885 PF03461 TRCF domain HIN88_09885 PF17757 UvrB interaction domain HIN88_09905 PF03737 Aldolase/RraA HIN88_09910 PF13460 NAD(P)H-binding HIN88_09915 PF01649 Ribosomal protein S20 HIN88_09925 PF00459 Inositol monophosphatase family HIN88_09940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HIN88_09940 PF00005 ABC transporter HIN88_09945 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_09950 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_09955 PF01432 Peptidase family M3 HIN88_09975 PF00593 TonB dependent receptor HIN88_09975 PF07715 TonB-dependent Receptor Plug Domain HIN88_09985 PF01618 MotA/TolQ/ExbB proton channel family HIN88_09990 PF02472 Biopolymer transport protein ExbD/TolR HIN88_09995 PF02472 Biopolymer transport protein ExbD/TolR HIN88_10005 PF01274 Malate synthase HIN88_10010 PF03969 AFG1-like ATPase HIN88_10020 PF00743 Flavin-binding monooxygenase-like HIN88_10030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HIN88_10040 PF00216 Bacterial DNA-binding protein HIN88_10045 PF00575 S1 RNA binding domain HIN88_10050 PF02224 Cytidylate kinase HIN88_10060 PF14437 MafB19-like deaminase HIN88_10070 PF03167 Uracil DNA glycosylase superfamily HIN88_10080 PF03934 Type II secretion system (T2SS), protein K HIN88_10085 PF07963 Prokaryotic N-terminal methylation motif HIN88_10085 PF11612 Type II secretion system (T2SS), protein J HIN88_10090 PF02501 Type II secretion system (T2SS), protein I HIN88_10090 PF07963 Prokaryotic N-terminal methylation motif HIN88_10105 PF01026 TatD related DNase HIN88_10115 PF09115 DNA polymerase III, delta subunit, C terminal HIN88_10120 PF02348 Cytidylyltransferase HIN88_10125 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HIN88_10130 PF00005 ABC transporter HIN88_10130 PF00664 ABC transporter transmembrane region HIN88_10140 PF01618 MotA/TolQ/ExbB proton channel family HIN88_10145 PF17762 HTH domain found in ParB protein HIN88_10145 PF02195 ParB-like nuclease domain HIN88_10150 PF13614 AAA domain HIN88_10155 PF02527 rRNA small subunit methyltransferase G HIN88_10160 PF00483 Nucleotidyl transferase HIN88_10165 PF01636 Phosphotransferase enzyme family HIN88_10170 PF04453 LPS transport system D HIN88_10170 PF03968 OstA-like protein HIN88_10175 PF09312 SurA N-terminal domain HIN88_10175 PF00639 PPIC-type PPIASE domain HIN88_10180 PF01116 Fructose-bisphosphate aldolase class-II HIN88_10190 PF00162 Phosphoglycerate kinase HIN88_10200 PF02545 Maf-like protein HIN88_10205 PF08007 Cupin superfamily protein HIN88_10220 PF00375 Sodium:dicarboxylate symporter family HIN88_10225 PF06912 Protein of unknown function (DUF1275) HIN88_10230 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) HIN88_10235 PF00664 ABC transporter transmembrane region HIN88_10235 PF00005 ABC transporter HIN88_10245 PF12833 Helix-turn-helix domain HIN88_10245 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HIN88_10250 PF01597 Glycine cleavage H-protein HIN88_10255 PF02146 Sir2 family HIN88_10260 PF00474 Sodium:solute symporter family HIN88_10265 PF01037 Lrp/AsnC ligand binding domain HIN88_10270 PF00171 Aldehyde dehydrogenase family HIN88_10270 PF01619 Proline dehydrogenase HIN88_10270 PF14850 DNA-binding domain of Proline dehydrogenase HIN88_10270 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HIN88_10275 PF04229 GrpB protein HIN88_10280 PF05958 tRNA (Uracil-5-)-methyltransferase HIN88_10290 PF09992 Phosphodiester glycosidase HIN88_10300 PF04264 YceI-like domain HIN88_10310 PF00456 Transketolase, thiamine diphosphate binding domain HIN88_10310 PF02780 Transketolase, C-terminal domain HIN88_10310 PF02779 Transketolase, pyrimidine binding domain HIN88_10315 PF00438 S-adenosylmethionine synthetase, N-terminal domain HIN88_10315 PF02772 S-adenosylmethionine synthetase, central domain HIN88_10315 PF02773 S-adenosylmethionine synthetase, C-terminal domain HIN88_10335 PF00905 Penicillin binding protein transpeptidase domain HIN88_10350 PF02075 Crossover junction endodeoxyribonuclease RuvC HIN88_10360 PF08331 Domain of unknown function (DUF1730) HIN88_10365 PF04055 Radical SAM superfamily HIN88_10365 PF06968 Biotin and Thiamin Synthesis associated domain HIN88_10380 PF16970 Type-1 fimbrial protein, A HIN88_10385 PF02753 Pili assembly chaperone PapD, C-terminal domain HIN88_10385 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HIN88_10390 PF13953 PapC C-terminal domain HIN88_10390 PF13954 PapC N-terminal domain HIN88_10390 PF00577 Outer membrane usher protein HIN88_10410 PF00892 EamA-like transporter family HIN88_10420 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HIN88_10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10430 PF03466 LysR substrate binding domain HIN88_10450 PF00440 Bacterial regulatory proteins, tetR family HIN88_10460 PF01709 Transcriptional regulator HIN88_10465 PF01037 Lrp/AsnC ligand binding domain HIN88_10475 PF00005 ABC transporter HIN88_10480 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_10485 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_10500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_10500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HIN88_10510 PF00296 Luciferase-like monooxygenase HIN88_10515 PF03180 NLPA lipoprotein HIN88_10520 PF03180 NLPA lipoprotein HIN88_10525 PF00005 ABC transporter HIN88_10525 PF09383 NIL domain HIN88_10530 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_10535 PF06071 Protein of unknown function (DUF933) HIN88_10535 PF01926 50S ribosome-binding GTPase HIN88_10560 PF03591 AzlC protein HIN88_10565 PF05437 Branched-chain amino acid transport protein (AzlD) HIN88_10575 PF02222 ATP-grasp domain HIN88_10580 PF01909 Nucleotidyltransferase domain HIN88_10580 PF01966 HD domain HIN88_10580 PF08335 GlnD PII-uridylyltransferase HIN88_10585 PF00155 Aminotransferase class I and II HIN88_10595 PF12833 Helix-turn-helix domain HIN88_10595 PF12852 Cupin HIN88_10600 PF00255 Glutathione peroxidase HIN88_10605 PF01641 SelR domain HIN88_10610 PF00155 Aminotransferase class I and II HIN88_10615 PF00375 Sodium:dicarboxylate symporter family HIN88_10620 PF17763 Glutaminase/Asparaginase C-terminal domain HIN88_10620 PF00710 Asparaginase, N-terminal HIN88_10625 PF14579 Helix-hairpin-helix motif HIN88_10625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HIN88_10625 PF02811 PHP domain HIN88_10625 PF07733 Bacterial DNA polymerase III alpha NTPase domain HIN88_10625 PF01336 OB-fold nucleic acid binding domain HIN88_10630 PF00588 SpoU rRNA Methylase family HIN88_10635 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_10650 PF13192 Thioredoxin domain HIN88_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10665 PF03466 LysR substrate binding domain HIN88_10670 PF01758 Sodium Bile acid symporter family HIN88_10675 PF01022 Bacterial regulatory protein, arsR family HIN88_10680 PF03960 ArsC family HIN88_10690 PF13382 Adenine deaminase C-terminal domain HIN88_10690 PF01979 Amidohydrolase family HIN88_10700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10700 PF03466 LysR substrate binding domain HIN88_10710 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HIN88_10715 PF01177 Asp/Glu/Hydantoin racemase HIN88_10720 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HIN88_10725 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_10730 PF00005 ABC transporter HIN88_10735 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HIN88_10745 PF00083 Sugar (and other) transporter HIN88_10750 PF00296 Luciferase-like monooxygenase HIN88_10755 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HIN88_10755 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_10755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_10765 PF01654 Cytochrome bd terminal oxidase subunit I HIN88_10770 PF02322 Cytochrome bd terminal oxidase subunit II HIN88_10780 PF00392 Bacterial regulatory proteins, gntR family HIN88_10780 PF00155 Aminotransferase class I and II HIN88_10785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10785 PF03466 LysR substrate binding domain HIN88_10800 PF00698 Acyl transferase domain HIN88_10805 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG HIN88_10815 PF01039 Carboxyl transferase domain HIN88_10820 PF06857 Malonate decarboxylase delta subunit (MdcD) HIN88_10825 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase HIN88_10830 PF16957 Malonate decarboxylase, alpha subunit, transporter HIN88_10835 PF07690 Major Facilitator Superfamily HIN88_10850 PF00155 Aminotransferase class I and II HIN88_10850 PF00392 Bacterial regulatory proteins, gntR family HIN88_10855 PF04172 LrgB-like family HIN88_10860 PF03788 LrgA family HIN88_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10865 PF03466 LysR substrate binding domain HIN88_10870 PF14834 Glutathione S-transferase, C-terminal domain HIN88_10870 PF02798 Glutathione S-transferase, N-terminal domain HIN88_10875 PF02798 Glutathione S-transferase, N-terminal domain HIN88_10880 PF03466 LysR substrate binding domain HIN88_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10890 PF00581 Rhodanese-like domain HIN88_10895 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_10905 PF00266 Aminotransferase class-V HIN88_10910 PF01810 LysE type translocator HIN88_10915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10915 PF03466 LysR substrate binding domain HIN88_10925 PF00497 Bacterial extracellular solute-binding proteins, family 3 HIN88_10930 PF00497 Bacterial extracellular solute-binding proteins, family 3 HIN88_10935 PF00005 ABC transporter HIN88_10940 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_10945 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_10960 PF07690 Major Facilitator Superfamily HIN88_10965 PF01638 HxlR-like helix-turn-helix HIN88_10980 PF03466 LysR substrate binding domain HIN88_10980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_10990 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HIN88_10995 PF00072 Response regulator receiver domain HIN88_11000 PF09308 LuxQ, periplasmic HIN88_11000 PF00512 His Kinase A (phospho-acceptor) domain HIN88_11000 PF00072 Response regulator receiver domain HIN88_11000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_11010 PF01037 Lrp/AsnC ligand binding domain HIN88_11010 PF13404 AsnC-type helix-turn-helix domain HIN88_11020 PF00717 Peptidase S24-like HIN88_11045 PF06628 Catalase-related immune-responsive HIN88_11045 PF00199 Catalase HIN88_11045 PF18011 C-terminal domain found in long catalases HIN88_11055 PF00994 Probable molybdopterin binding domain HIN88_11055 PF18146 Damage-inducible protein CinA KH domain HIN88_11055 PF02464 Competence-damaged protein HIN88_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_11090 PF03466 LysR substrate binding domain HIN88_11110 PF00501 AMP-binding enzyme HIN88_11110 PF13193 AMP-binding enzyme C-terminal domain HIN88_11115 PF00440 Bacterial regulatory proteins, tetR family HIN88_11120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_11120 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_11120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_11125 PF01039 Carboxyl transferase domain HIN88_11130 PF00378 Enoyl-CoA hydratase/isomerase HIN88_11135 PF00289 Biotin carboxylase, N-terminal domain HIN88_11135 PF18140 Propionyl-coenzyme A carboxylase BT domain HIN88_11135 PF02785 Biotin carboxylase C-terminal domain HIN88_11135 PF00364 Biotin-requiring enzyme HIN88_11135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HIN88_11140 PF00682 HMGL-like HIN88_11145 PF03466 LysR substrate binding domain HIN88_11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_11160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_11160 PF12806 Acetyl-CoA dehydrogenase C-terminal like HIN88_11160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_11160 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_11170 PF07690 Major Facilitator Superfamily HIN88_11180 PF01144 Coenzyme A transferase HIN88_11185 PF01144 Coenzyme A transferase HIN88_11190 PF07690 Major Facilitator Superfamily HIN88_11195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_11195 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_11195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_11200 PF00378 Enoyl-CoA hydratase/isomerase HIN88_11210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HIN88_11210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HIN88_11210 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain HIN88_11215 PF02803 Thiolase, C-terminal domain HIN88_11215 PF00108 Thiolase, N-terminal domain HIN88_11220 PF09339 IclR helix-turn-helix domain HIN88_11225 PF07690 Major Facilitator Superfamily HIN88_11230 PF03060 Nitronate monooxygenase HIN88_11235 PF00378 Enoyl-CoA hydratase/isomerase HIN88_11240 PF09339 IclR helix-turn-helix domain HIN88_11265 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_11265 PF13823 Alcohol dehydrogenase GroES-associated HIN88_11265 PF00107 Zinc-binding dehydrogenase HIN88_11270 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HIN88_11270 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HIN88_11275 PF01965 DJ-1/PfpI family HIN88_11280 PF00892 EamA-like transporter family HIN88_11285 PF00892 EamA-like transporter family HIN88_11290 PF02436 Conserved carboxylase domain HIN88_11290 PF00682 HMGL-like HIN88_11290 PF00364 Biotin-requiring enzyme HIN88_11290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HIN88_11290 PF02785 Biotin carboxylase C-terminal domain HIN88_11290 PF00289 Biotin carboxylase, N-terminal domain HIN88_11300 PF00171 Aldehyde dehydrogenase family HIN88_11305 PF00701 Dihydrodipicolinate synthetase family HIN88_11310 PF00083 Sugar (and other) transporter HIN88_11320 PF07729 FCD domain HIN88_11320 PF00392 Bacterial regulatory proteins, gntR family HIN88_11345 PF00654 Voltage gated chloride channel HIN88_11350 PF00364 Biotin-requiring enzyme HIN88_11350 PF02785 Biotin carboxylase C-terminal domain HIN88_11350 PF00289 Biotin carboxylase, N-terminal domain HIN88_11350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HIN88_11360 PF07286 Protein of unknown function (DUF1445) HIN88_11365 PF03746 LamB/YcsF family HIN88_11370 PF01566 Natural resistance-associated macrophage protein HIN88_11375 PF03466 LysR substrate binding domain HIN88_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_11390 PF13419 Haloacid dehalogenase-like hydrolase HIN88_11410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HIN88_11410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HIN88_11430 PF07690 Major Facilitator Superfamily HIN88_11450 PF05192 MutS domain III HIN88_11450 PF05188 MutS domain II HIN88_11450 PF05190 MutS family domain IV HIN88_11450 PF00488 MutS domain V HIN88_11450 PF01624 MutS domain I HIN88_11460 PF11953 Domain of unknown function (DUF3470) HIN88_11460 PF00037 4Fe-4S binding domain HIN88_11470 PF01596 O-methyltransferase HIN88_11480 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_11485 PF01205 Uncharacterized protein family UPF0029 HIN88_11495 PF00664 ABC transporter transmembrane region HIN88_11495 PF00005 ABC transporter HIN88_11495 PF03412 Peptidase C39 family HIN88_11500 PF02321 Outer membrane efflux protein HIN88_11510 PF12399 Branched-chain amino acid ATP-binding cassette transporter HIN88_11510 PF00005 ABC transporter HIN88_11515 PF03968 OstA-like protein HIN88_11530 PF01380 SIS domain HIN88_11530 PF00571 CBS domain HIN88_11535 PF01406 tRNA synthetases class I (C) catalytic domain HIN88_11535 PF09190 DALR domain HIN88_11570 PF01638 HxlR-like helix-turn-helix HIN88_11575 PF07690 Major Facilitator Superfamily HIN88_11600 PF03807 NADP oxidoreductase coenzyme F420-dependent HIN88_11600 PF14748 Pyrroline-5-carboxylate reductase dimerisation HIN88_11610 PF00313 'Cold-shock' DNA-binding domain HIN88_11615 PF01810 LysE type translocator HIN88_11650 PF13742 OB-fold nucleic acid binding domain HIN88_11650 PF02601 Exonuclease VII, large subunit HIN88_11685 PF00376 MerR family regulatory protein HIN88_11685 PF09278 MerR, DNA binding HIN88_11690 PF00403 Heavy-metal-associated domain HIN88_11700 PF03466 LysR substrate binding domain HIN88_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_11705 PF00355 Rieske [2Fe-2S] domain HIN88_11705 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HIN88_11710 PF00866 Ring hydroxylating beta subunit HIN88_11715 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_11715 PF00175 Oxidoreductase NAD-binding domain HIN88_11715 PF00970 Oxidoreductase FAD-binding domain HIN88_11720 PF00106 short chain dehydrogenase HIN88_11725 PF03594 Benzoate membrane transport protein HIN88_11730 PF07690 Major Facilitator Superfamily HIN88_11740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HIN88_11740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HIN88_11745 PF00270 DEAD/DEAH box helicase HIN88_11745 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HIN88_11745 PF00271 Helicase conserved C-terminal domain HIN88_11745 PF04408 Helicase associated domain (HA2) HIN88_11745 PF11898 Domain of unknown function (DUF3418) HIN88_11750 PF10417 C-terminal domain of 1-Cys peroxiredoxin HIN88_11750 PF00578 AhpC/TSA family HIN88_11770 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_11770 PF13192 Thioredoxin domain HIN88_11780 PF00043 Glutathione S-transferase, C-terminal domain HIN88_11780 PF02798 Glutathione S-transferase, N-terminal domain HIN88_11790 PF02390 Putative methyltransferase HIN88_11795 PF00043 Glutathione S-transferase, C-terminal domain HIN88_11795 PF13417 Glutathione S-transferase, N-terminal domain HIN88_11805 PF13488 Glycine zipper HIN88_11805 PF00691 OmpA family HIN88_11810 PF01979 Amidohydrolase family HIN88_11815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HIN88_11815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HIN88_11825 PF01170 Putative RNA methylase family UPF0020 HIN88_11825 PF10672 S-adenosylmethionine-dependent methyltransferase HIN88_11825 PF02926 THUMP domain HIN88_11840 PF17871 AAA lid domain HIN88_11840 PF02861 Clp amino terminal domain, pathogenicity island component HIN88_11840 PF10431 C-terminal, D2-small domain, of ClpB protein HIN88_11840 PF00004 ATPase family associated with various cellular activities (AAA) HIN88_11840 PF07724 AAA domain (Cdc48 subfamily) HIN88_11855 PF02566 OsmC-like protein HIN88_11860 PF00027 Cyclic nucleotide-binding domain HIN88_11860 PF13545 Crp-like helix-turn-helix domain HIN88_11865 PF00248 Aldo/keto reductase family HIN88_11880 PF00709 Adenylosuccinate synthetase HIN88_11885 PF13393 Histidyl-tRNA synthetase HIN88_11890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HIN88_11890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HIN88_11895 PF01411 tRNA synthetases class II (A) HIN88_11895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HIN88_11895 PF02272 DHHA1 domain HIN88_11900 PF00589 Phage integrase family HIN88_11900 PF13356 Arm DNA-binding domain HIN88_11905 PF00884 Sulfatase HIN88_11905 PF08019 Phosphoethanolamine transferase EptA/EptB HIN88_11945 PF00149 Calcineurin-like phosphoesterase HIN88_11970 PF05154 TM2 domain HIN88_12025 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) HIN88_12040 PF06381 Protein of unknown function (DUF1073) HIN88_12145 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HIN88_12150 PF00717 Peptidase S24-like HIN88_12150 PF01726 LexA DNA binding domain HIN88_12205 PF01842 ACT domain HIN88_12205 PF00696 Amino acid kinase family HIN88_12205 PF13840 ACT domain HIN88_12210 PF02599 Global regulator protein family HIN88_12215 PF01351 Ribonuclease HII HIN88_12225 PF01292 Prokaryotic cytochrome b561 HIN88_12230 PF00962 Adenosine/AMP deaminase HIN88_12235 PF00860 Permease family HIN88_12245 PF00743 Flavin-binding monooxygenase-like HIN88_12250 PF00106 short chain dehydrogenase HIN88_12260 PF02678 Pirin HIN88_12260 PF17954 Quercetinase C-terminal cupin domain HIN88_12265 PF17932 Tetracyclin repressor-like, C-terminal domain HIN88_12265 PF00440 Bacterial regulatory proteins, tetR family HIN88_12275 PF00106 short chain dehydrogenase HIN88_12280 PF00743 Flavin-binding monooxygenase-like HIN88_12285 PF04072 Leucine carboxyl methyltransferase HIN88_12290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_12290 PF03466 LysR substrate binding domain HIN88_12295 PF07690 Major Facilitator Superfamily HIN88_12300 PF05681 Fumarate hydratase (Fumerase) HIN88_12305 PF05683 Fumarase C-terminus HIN88_12310 PF12833 Helix-turn-helix domain HIN88_12310 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HIN88_12315 PF00743 Flavin-binding monooxygenase-like HIN88_12320 PF00106 short chain dehydrogenase HIN88_12325 PF07859 alpha/beta hydrolase fold HIN88_12330 PF05199 GMC oxidoreductase HIN88_12335 PF03573 outer membrane porin, OprD family HIN88_12340 PF07690 Major Facilitator Superfamily HIN88_12345 PF00884 Sulfatase HIN88_12350 PF03781 Sulfatase-modifying factor enzyme 1 HIN88_12360 PF00355 Rieske [2Fe-2S] domain HIN88_12365 PF00175 Oxidoreductase NAD-binding domain HIN88_12365 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_12380 PF07690 Major Facilitator Superfamily HIN88_12385 PF00378 Enoyl-CoA hydratase/isomerase HIN88_12390 PF00171 Aldehyde dehydrogenase family HIN88_12400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_12400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_12400 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_12405 PF03573 outer membrane porin, OprD family HIN88_12420 PF07519 Tannase and feruloyl esterase HIN88_12425 PF00392 Bacterial regulatory proteins, gntR family HIN88_12425 PF07729 FCD domain HIN88_12430 PF00171 Aldehyde dehydrogenase family HIN88_12435 PF00701 Dihydrodipicolinate synthetase family HIN88_12440 PF13378 Enolase C-terminal domain-like HIN88_12445 PF07690 Major Facilitator Superfamily HIN88_12450 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus HIN88_12450 PF08666 SAF domain HIN88_12455 PF00892 EamA-like transporter family HIN88_12460 PF12833 Helix-turn-helix domain HIN88_12460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HIN88_12465 PF00171 Aldehyde dehydrogenase family HIN88_12485 PF05860 haemagglutination activity domain HIN88_12485 PF13018 Extended Signal Peptide of Type V secretion system HIN88_12485 PF13332 Hemagglutinin repeat HIN88_12485 PF04829 Pre-toxin domain with VENN motif HIN88_12490 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HIN88_12490 PF17287 POTRA domain HIN88_12490 PF08479 POTRA domain, ShlB-type HIN88_12495 PF00324 Amino acid permease HIN88_12500 PF04958 Arginine N-succinyltransferase beta subunit HIN88_12505 PF00202 Aminotransferase class-III HIN88_12515 PF00171 Aldehyde dehydrogenase family HIN88_12525 PF07729 FCD domain HIN88_12525 PF00392 Bacterial regulatory proteins, gntR family HIN88_12535 PF00324 Amino acid permease HIN88_12540 PF01266 FAD dependent oxidoreductase HIN88_12545 PF00324 Amino acid permease HIN88_12555 PF05643 Putative bacterial lipoprotein (DUF799) HIN88_12565 PF03783 Curli production assembly/transport component CsgG HIN88_12585 PF03180 NLPA lipoprotein HIN88_12590 PF05987 Bacterial protein of unknown function (DUF898) HIN88_12605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HIN88_12605 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_12610 PF00764 Arginosuccinate synthase HIN88_12615 PF00563 EAL domain HIN88_12615 PF01590 GAF domain HIN88_12615 PF00990 Diguanylate cyclase, GGDEF domain HIN88_12615 PF00360 Phytochrome region HIN88_12620 PF01979 Amidohydrolase family HIN88_12625 PF00929 Exonuclease HIN88_12640 PF00593 TonB dependent receptor HIN88_12640 PF07715 TonB-dependent Receptor Plug Domain HIN88_12645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HIN88_12645 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_12650 PF00005 ABC transporter HIN88_12650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HIN88_12655 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_12655 PF12911 N-terminal TM domain of oligopeptide transport permease C HIN88_12660 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_12665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HIN88_12670 PF01464 Transglycosylase SLT domain HIN88_12670 PF01476 LysM domain HIN88_12670 PF01476 LysM domain HIN88_12670 PF01464 Transglycosylase SLT domain HIN88_12675 PF00929 Exonuclease HIN88_12685 PF09297 NADH pyrophosphatase zinc ribbon domain HIN88_12685 PF00293 NUDIX domain HIN88_12695 PF04972 BON domain HIN88_12700 PF02021 Uncharacterised protein family UPF0102 HIN88_12705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HIN88_12715 PF03466 LysR substrate binding domain HIN88_12715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_12720 PF01810 LysE type translocator HIN88_12730 PF13411 MerR HTH family regulatory protein HIN88_12740 PF01494 FAD binding domain HIN88_12745 PF01494 FAD binding domain HIN88_12750 PF00557 Metallopeptidase family M24 HIN88_12750 PF05195 Aminopeptidase P, N-terminal domain HIN88_12840 PF01464 Transglycosylase SLT domain HIN88_12840 PF01551 Peptidase family M23 HIN88_12840 PF10145 Phage-related minor tail protein HIN88_12900 PF04860 Phage portal protein HIN88_13000 PF03796 DnaB-like helicase C terminal domain HIN88_13000 PF00772 DnaB-like helicase N terminal domain HIN88_13075 PF00717 Peptidase S24-like HIN88_13080 PF13438 Domain of unknown function (DUF4113) HIN88_13080 PF11799 impB/mucB/samB family C-terminal domain HIN88_13080 PF00817 impB/mucB/samB family HIN88_13345 PF01695 IstB-like ATP binding protein HIN88_13380 PF01381 Helix-turn-helix HIN88_13455 PF01812 5-formyltetrahydrofolate cyclo-ligase family HIN88_13465 PF05658 Head domain of trimeric autotransporter adhesin HIN88_13465 PF03895 YadA-like membrane anchor domain HIN88_13465 PF13018 Extended Signal Peptide of Type V secretion system HIN88_13465 PF05662 Coiled stalk of trimeric autotransporter adhesin HIN88_13470 PF00004 ATPase family associated with various cellular activities (AAA) HIN88_13470 PF02190 ATP-dependent protease La (LON) substrate-binding domain HIN88_13470 PF05362 Lon protease (S16) C-terminal proteolytic domain HIN88_13475 PF02590 Predicted SPOUT methyltransferase HIN88_13480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HIN88_13490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HIN88_13490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HIN88_13495 PF04060 Putative Fe-S cluster HIN88_13500 PF00633 Helix-hairpin-helix motif HIN88_13500 PF00730 HhH-GPD superfamily base excision DNA repair protein HIN88_13500 PF10576 Iron-sulfur binding domain of endonuclease III HIN88_13510 PF05191 Adenylate kinase, active site lid HIN88_13525 PF03717 Penicillin-binding Protein dimerisation domain HIN88_13525 PF00905 Penicillin binding protein transpeptidase domain HIN88_13540 PF02492 CobW/HypB/UreG, nucleotide-binding domain HIN88_13545 PF01730 UreF HIN88_13550 PF05194 UreE urease accessory protein, C-terminal domain HIN88_13550 PF02814 UreE urease accessory protein, N-terminal domain HIN88_13555 PF01979 Amidohydrolase family HIN88_13555 PF00449 Urease alpha-subunit, N-terminal domain HIN88_13565 PF00699 Urease beta subunit HIN88_13570 PF00547 Urease, gamma subunit HIN88_13575 PF01774 UreD urease accessory protein HIN88_13590 PF00463 Isocitrate lyase family HIN88_13595 PF03466 LysR substrate binding domain HIN88_13595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_13600 PF00571 CBS domain HIN88_13600 PF03471 Transporter associated domain HIN88_13600 PF01595 Cyclin M transmembrane N-terminal domain HIN88_13605 PF03600 Citrate transporter HIN88_13620 PF00009 Elongation factor Tu GTP binding domain HIN88_13625 PF01507 Phosphoadenosine phosphosulfate reductase family HIN88_13635 PF14052 Capsule assembly protein Wzi HIN88_13640 PF00152 tRNA synthetases class II (D, K and N) HIN88_13640 PF01336 OB-fold nucleic acid binding domain HIN88_13655 PF00301 Rubredoxin HIN88_13660 PF18113 Rubredoxin binding C-terminal domain HIN88_13660 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_13665 PF00561 alpha/beta hydrolase fold HIN88_13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_13670 PF03466 LysR substrate binding domain HIN88_13685 PF02503 Polyphosphate kinase middle domain HIN88_13685 PF13089 Polyphosphate kinase N-terminal domain HIN88_13685 PF17941 Polyphosphate kinase C-terminal domain 1 HIN88_13685 PF13090 Polyphosphate kinase C-terminal domain 2 HIN88_13690 PF00912 Transglycosylase HIN88_13695 PF01694 Rhomboid family HIN88_13705 PF00005 ABC transporter HIN88_13710 PF13472 GDSL-like Lipase/Acylhydrolase family HIN88_13715 PF00484 Carbonic anhydrase HIN88_13720 PF00561 alpha/beta hydrolase fold HIN88_13730 PF00593 TonB dependent receptor HIN88_13730 PF07715 TonB-dependent Receptor Plug Domain HIN88_13735 PF01521 Iron-sulphur cluster biosynthesis HIN88_13735 PF01106 NifU-like domain HIN88_13745 PF00884 Sulfatase HIN88_13750 PF03781 Sulfatase-modifying factor enzyme 1 HIN88_13765 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_13770 PF01384 Phosphate transporter family HIN88_13775 PF02574 Homocysteine S-methyltransferase HIN88_13775 PF00809 Pterin binding enzyme HIN88_13775 PF02965 Vitamin B12 dependent methionine synthase, activation domain HIN88_13775 PF02607 B12 binding domain HIN88_13775 PF02310 B12 binding domain HIN88_13780 PF02780 Transketolase, C-terminal domain HIN88_13780 PF02779 Transketolase, pyrimidine binding domain HIN88_13785 PF00456 Transketolase, thiamine diphosphate binding domain HIN88_13790 PF07690 Major Facilitator Superfamily HIN88_13800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_13800 PF03466 LysR substrate binding domain HIN88_13810 PF01263 Aldose 1-epimerase HIN88_13815 PF07690 Major Facilitator Superfamily HIN88_13820 PF12833 Helix-turn-helix domain HIN88_13820 PF02311 AraC-like ligand binding domain HIN88_13825 PF04960 Glutaminase HIN88_13830 PF01327 Polypeptide deformylase HIN88_13835 PF07690 Major Facilitator Superfamily HIN88_13845 PF00205 Thiamine pyrophosphate enzyme, central domain HIN88_13845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HIN88_13845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HIN88_13850 PF00171 Aldehyde dehydrogenase family HIN88_13855 PF01958 Domain of unknown function DUF108 HIN88_13855 PF03447 Homoserine dehydrogenase, NAD binding domain HIN88_13865 PF12697 Alpha/beta hydrolase family HIN88_13875 PF07690 Major Facilitator Superfamily HIN88_13880 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_13880 PF14759 Reductase C-terminal HIN88_13885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HIN88_13895 PF00355 Rieske [2Fe-2S] domain HIN88_13905 PF00355 Rieske [2Fe-2S] domain HIN88_13910 PF09339 IclR helix-turn-helix domain HIN88_13910 PF01614 Bacterial transcriptional regulator HIN88_13925 PF00378 Enoyl-CoA hydratase/isomerase HIN88_13935 PF00535 Glycosyl transferase family 2 HIN88_13940 PF01522 Polysaccharide deacetylase HIN88_13940 PF14883 Hypothetical glycosyl hydrolase family 13 HIN88_13945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HIN88_13950 PF07152 YaeQ protein HIN88_13955 PF00375 Sodium:dicarboxylate symporter family HIN88_13960 PF07683 Cobalamin synthesis protein cobW C-terminal domain HIN88_13960 PF02492 CobW/HypB/UreG, nucleotide-binding domain HIN88_13970 PF03061 Thioesterase superfamily HIN88_13980 PF02028 BCCT, betaine/carnitine/choline family transporter HIN88_13985 PF02028 BCCT, betaine/carnitine/choline family transporter HIN88_13990 PF13977 BetI-type transcriptional repressor, C-terminal HIN88_13990 PF00440 Bacterial regulatory proteins, tetR family HIN88_13995 PF00171 Aldehyde dehydrogenase family HIN88_14000 PF05199 GMC oxidoreductase HIN88_14000 PF00732 GMC oxidoreductase HIN88_14005 PF06039 Malate:quinone oxidoreductase (Mqo) HIN88_14015 PF02574 Homocysteine S-methyltransferase HIN88_14020 PF13520 Amino acid permease HIN88_14045 PF00701 Dihydrodipicolinate synthetase family HIN88_14050 PF00083 Sugar (and other) transporter HIN88_14125 PF01381 Helix-turn-helix HIN88_14140 PF13356 Arm DNA-binding domain HIN88_14140 PF00589 Phage integrase family HIN88_14155 PF07690 Major Facilitator Superfamily HIN88_14160 PF13533 Biotin-lipoyl like HIN88_14165 PF03061 Thioesterase superfamily HIN88_14170 PF00490 Delta-aminolevulinic acid dehydratase HIN88_14175 PF01266 FAD dependent oxidoreductase HIN88_14180 PF01370 NAD dependent epimerase/dehydratase family HIN88_14180 PF08338 Domain of unknown function (DUF1731) HIN88_14200 PF12320 Type 5 capsule protein repressor C-terminal domain HIN88_14200 PF00149 Calcineurin-like phosphoesterase HIN88_14210 PF01168 Alanine racemase, N-terminal domain HIN88_14215 PF00437 Type II/IV secretion system protein HIN88_14220 PF00437 Type II/IV secretion system protein HIN88_14225 PF01475 Ferric uptake regulator family HIN88_14230 PF04355 SmpA / OmlA family HIN88_14235 PF03658 RnfH family Ubiquitin HIN88_14245 PF01814 Hemerythrin HHE cation binding domain HIN88_14250 PF13230 Glutamine amidotransferases class-II HIN88_14260 PF00696 Amino acid kinase family HIN88_14265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HIN88_14265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HIN88_14265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HIN88_14265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HIN88_14270 PF00692 dUTPase HIN88_14275 PF00580 UvrD/REP helicase N-terminal domain HIN88_14275 PF13361 UvrD-like helicase C-terminal domain HIN88_14280 PF00691 OmpA family HIN88_14280 PF13488 Glycine zipper HIN88_14285 PF01553 Acyltransferase HIN88_14295 PF03775 Septum formation inhibitor MinC, C-terminal domain HIN88_14300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HIN88_14305 PF03776 Septum formation topological specificity factor MinE HIN88_14315 PF01810 LysE type translocator HIN88_14320 PF17854 FtsK alpha domain HIN88_14320 PF09397 Ftsk gamma domain HIN88_14320 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HIN88_14320 PF01580 FtsK/SpoIIIE family HIN88_14325 PF07992 Pyridine nucleotide-disulphide oxidoreductase HIN88_14330 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HIN88_14335 PF04377 Arginine-tRNA-protein transferase, C terminus HIN88_14335 PF04376 Arginine-tRNA-protein transferase, N terminus HIN88_14340 PF00583 Acetyltransferase (GNAT) family HIN88_14355 PF03143 Elongation factor Tu C-terminal domain HIN88_14355 PF00009 Elongation factor Tu GTP binding domain HIN88_14355 PF03144 Elongation factor Tu domain 2 HIN88_14360 PF00679 Elongation factor G C-terminus HIN88_14360 PF14492 Elongation Factor G, domain II HIN88_14360 PF03764 Elongation factor G, domain IV HIN88_14360 PF03144 Elongation factor Tu domain 2 HIN88_14360 PF00009 Elongation factor Tu GTP binding domain HIN88_14365 PF00177 Ribosomal protein S7p/S5e HIN88_14370 PF00164 Ribosomal protein S12/S23 HIN88_14380 PF02801 Beta-ketoacyl synthase, C-terminal domain HIN88_14380 PF00109 Beta-ketoacyl synthase, N-terminal domain HIN88_14390 PF05726 Pirin C-terminal cupin domain HIN88_14390 PF02678 Pirin HIN88_14400 PF00795 Carbon-nitrogen hydrolase HIN88_14400 PF02540 NAD synthase HIN88_14415 PF00970 Oxidoreductase FAD-binding domain HIN88_14415 PF00111 2Fe-2S iron-sulfur cluster binding domain HIN88_14415 PF00175 Oxidoreductase NAD-binding domain HIN88_14420 PF00171 Aldehyde dehydrogenase family HIN88_14425 PF00848 Ring hydroxylating alpha subunit (catalytic domain) HIN88_14425 PF00355 Rieske [2Fe-2S] domain HIN88_14430 PF07859 alpha/beta hydrolase fold HIN88_14435 PF02028 BCCT, betaine/carnitine/choline family transporter HIN88_14440 PF00180 Isocitrate/isopropylmalate dehydrogenase HIN88_14445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_14445 PF03466 LysR substrate binding domain HIN88_14465 PF00037 4Fe-4S binding domain HIN88_14470 PF01467 Cytidylyltransferase-like HIN88_14475 PF01668 SmpB protein HIN88_14480 PF03358 NADPH-dependent FMN reductase HIN88_14490 PF01479 S4 domain HIN88_14490 PF00849 RNA pseudouridylate synthase HIN88_14495 PF13525 Outer membrane lipoprotein HIN88_14500 PF10410 DnaB-helicase binding domain of primase HIN88_14500 PF08278 DNA primase DnaG DnaB-binding HIN88_14500 PF08275 DNA primase catalytic core, N-terminal domain HIN88_14500 PF01807 CHC2 zinc finger HIN88_14505 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HIN88_14505 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HIN88_14505 PF01488 Shikimate / quinate 5-dehydrogenase HIN88_14515 PF03550 Outer membrane lipoprotein LolB HIN88_14520 PF08544 GHMP kinases C terminal HIN88_14520 PF00288 GHMP kinases N terminal domain HIN88_14545 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HIN88_14545 PF14572 Phosphoribosyl synthetase-associated domain HIN88_14550 PF01386 Ribosomal L25p family HIN88_14555 PF01195 Peptidyl-tRNA hydrolase HIN88_14560 PF02261 Aspartate decarboxylase HIN88_14575 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HIN88_14585 PF08543 Phosphomethylpyrimidine kinase HIN88_14585 PF02581 Thiamine monophosphate synthase HIN88_14585 PF03070 TENA/THI-4/PQQC family HIN88_14590 PF01476 LysM domain HIN88_14590 PF04972 BON domain HIN88_14595 PF00550 Phosphopantetheine attachment site HIN88_14605 PF00698 Acyl transferase domain HIN88_14610 PF01783 Ribosomal L32p protein family HIN88_14615 PF02620 Large ribosomal RNA subunit accumulation protein YceD HIN88_14620 PF04315 Elongation factor P hydroxylase HIN88_14625 PF01300 Telomere recombination HIN88_14630 PF02616 Segregation and condensation protein ScpA HIN88_14635 PF04079 Segregation and condensation complex subunit ScpB HIN88_14640 PF00849 RNA pseudouridylate synthase HIN88_14640 PF01479 S4 domain HIN88_14655 PF00155 Aminotransferase class I and II HIN88_14660 PF06968 Biotin and Thiamin Synthesis associated domain HIN88_14660 PF04055 Radical SAM superfamily HIN88_14660 PF00202 Aminotransferase class-III HIN88_14665 PF12697 Alpha/beta hydrolase family HIN88_14665 PF08241 Methyltransferase domain HIN88_14670 PF02358 Trehalose-phosphatase HIN88_14675 PF00982 Glycosyltransferase family 20 HIN88_14680 PF07690 Major Facilitator Superfamily HIN88_14685 PF00210 Ferritin-like domain HIN88_14690 PF12826 Helix-hairpin-helix motif HIN88_14690 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HIN88_14690 PF03120 NAD-dependent DNA ligase OB-fold domain HIN88_14690 PF01653 NAD-dependent DNA ligase adenylation domain HIN88_14690 PF00533 BRCA1 C Terminus (BRCT) domain HIN88_14700 PF02463 RecF/RecN/SMC N terminal domain HIN88_14700 PF06470 SMC proteins Flexible Hinge Domain HIN88_14710 PF01925 Sulfite exporter TauE/SafE HIN88_14720 PF03309 Type III pantothenate kinase HIN88_14725 PF00448 SRP54-type protein, GTPase domain HIN88_14725 PF02881 SRP54-type protein, helical bundle domain HIN88_14725 PF02978 Signal peptide binding domain HIN88_14735 PF01207 Dihydrouridine synthase (Dus) HIN88_14765 PF00692 dUTPase HIN88_14780 PF01048 Phosphorylase superfamily HIN88_14785 PF10609 NUBPL iron-transfer P-loop NTPase HIN88_14795 PF09334 tRNA synthetases class I (M) HIN88_14795 PF01588 Putative tRNA binding domain HIN88_14820 PF13533 Biotin-lipoyl like HIN88_14825 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_14840 PF05552 Conserved TM helix HIN88_14855 PF00175 Oxidoreductase NAD-binding domain HIN88_14855 PF00970 Oxidoreductase FAD-binding domain HIN88_14860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_14860 PF03466 LysR substrate binding domain HIN88_14865 PF00313 'Cold-shock' DNA-binding domain HIN88_14875 PF00361 Proton-conducting membrane transporter HIN88_14880 PF00361 Proton-conducting membrane transporter HIN88_14885 PF00361 Proton-conducting membrane transporter HIN88_14885 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HIN88_14890 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HIN88_14895 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HIN88_14900 PF12838 4Fe-4S dicluster domain HIN88_14905 PF00146 NADH dehydrogenase HIN88_14910 PF00384 Molybdopterin oxidoreductase HIN88_14910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HIN88_14910 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HIN88_14915 PF10531 SLBB domain HIN88_14915 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HIN88_14915 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HIN88_14925 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HIN88_14925 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HIN88_14930 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HIN88_14935 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HIN88_14940 PF00990 Diguanylate cyclase, GGDEF domain HIN88_14940 PF17151 Periplasmic sensor domain HIN88_14950 PF00512 His Kinase A (phospho-acceptor) domain HIN88_14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_14950 PF00672 HAMP domain HIN88_14955 PF00072 Response regulator receiver domain HIN88_14955 PF00486 Transcriptional regulatory protein, C terminal HIN88_14965 PF03477 ATP cone domain HIN88_14965 PF00317 Ribonucleotide reductase, all-alpha domain HIN88_14965 PF02867 Ribonucleotide reductase, barrel domain HIN88_14975 PF00268 Ribonucleotide reductase, small chain HIN88_15040 PF01613 Flavin reductase like domain HIN88_15045 PF08267 Cobalamin-independent synthase, N-terminal domain HIN88_15045 PF01717 Cobalamin-independent synthase, Catalytic domain HIN88_15060 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HIN88_15060 PF12833 Helix-turn-helix domain HIN88_15065 PF07687 Peptidase dimerisation domain HIN88_15065 PF01546 Peptidase family M20/M25/M40 HIN88_15075 PF03466 LysR substrate binding domain HIN88_15075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_15080 PF07690 Major Facilitator Superfamily HIN88_15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_15090 PF03466 LysR substrate binding domain HIN88_15095 PF14537 Cytochrome c3 HIN88_15095 PF00890 FAD binding domain HIN88_15105 PF02515 CoA-transferase family III HIN88_15110 PF07690 Major Facilitator Superfamily HIN88_15115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_15115 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_15115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_15120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_15120 PF03466 LysR substrate binding domain HIN88_15125 PF00107 Zinc-binding dehydrogenase HIN88_15125 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_15130 PF00962 Adenosine/AMP deaminase HIN88_15155 PF02445 Quinolinate synthetase A protein HIN88_15160 PF01960 ArgJ family HIN88_15165 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HIN88_15165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HIN88_15170 PF00893 Small Multidrug Resistance protein HIN88_15180 PF05275 Copper resistance protein B precursor (CopB) HIN88_15185 PF07732 Multicopper oxidase HIN88_15185 PF00394 Multicopper oxidase HIN88_15185 PF07731 Multicopper oxidase HIN88_15200 PF00834 Ribulose-phosphate 3 epimerase family HIN88_15210 PF00756 Putative esterase HIN88_15220 PF04445 Putative SAM-dependent methyltransferase HIN88_15225 PF00814 Glycoprotease family HIN88_15230 PF00132 Bacterial transferase hexapeptide (six repeats) HIN88_15235 PF00293 NUDIX domain HIN88_15275 PF04715 Anthranilate synthase component I, N terminal region HIN88_15275 PF00425 chorismate binding enzyme HIN88_15280 PF00155 Aminotransferase class I and II HIN88_15285 PF00815 Histidinol dehydrogenase HIN88_15290 PF01634 ATP phosphoribosyltransferase HIN88_15295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HIN88_15300 PF01722 BolA-like protein HIN88_15305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HIN88_15310 PF00309 Sigma-54 factor, Activator interacting domain (AID) HIN88_15310 PF04552 Sigma-54, DNA binding domain HIN88_15310 PF04963 Sigma-54 factor, core binding domain HIN88_15355 PF00795 Carbon-nitrogen hydrolase HIN88_15365 PF01047 MarR family HIN88_15370 PF02566 OsmC-like protein HIN88_15375 PF00437 Type II/IV secretion system protein HIN88_15395 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HIN88_15395 PF00476 DNA polymerase family A HIN88_15395 PF01612 3'-5' exonuclease HIN88_15395 PF01367 5'-3' exonuclease, C-terminal SAM fold HIN88_15400 PF02325 YGGT family HIN88_15405 PF03807 NADP oxidoreductase coenzyme F420-dependent HIN88_15405 PF14748 Pyrroline-5-carboxylate reductase dimerisation HIN88_15410 PF09179 TilS substrate binding domain HIN88_15410 PF11734 TilS substrate C-terminal domain HIN88_15410 PF01171 PP-loop family HIN88_15415 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HIN88_15420 PF02541 Ppx/GppA phosphatase family HIN88_15425 PF00085 Thioredoxin HIN88_15430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HIN88_15430 PF07497 Rho termination factor, RNA-binding domain HIN88_15430 PF07498 Rho termination factor, N-terminal domain HIN88_15445 PF00216 Bacterial DNA-binding protein HIN88_15450 PF03483 B3/4 domain HIN88_15450 PF03147 Ferredoxin-fold anticodon binding domain HIN88_15450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HIN88_15450 PF01588 Putative tRNA binding domain HIN88_15450 PF03484 tRNA synthetase B5 domain HIN88_15455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HIN88_15455 PF01409 tRNA synthetases class II core domain (F) HIN88_15475 PF00453 Ribosomal protein L20 HIN88_15480 PF01632 Ribosomal protein L35 HIN88_15485 PF07690 Major Facilitator Superfamily HIN88_15490 PF09335 SNARE associated Golgi protein HIN88_15495 PF00043 Glutathione S-transferase, C-terminal domain HIN88_15495 PF02798 Glutathione S-transferase, N-terminal domain HIN88_15500 PF05198 Translation initiation factor IF-3, N-terminal domain HIN88_15500 PF00707 Translation initiation factor IF-3, C-terminal domain HIN88_15505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HIN88_15505 PF03129 Anticodon binding domain HIN88_15505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HIN88_15505 PF02824 TGS domain HIN88_15510 PF13193 AMP-binding enzyme C-terminal domain HIN88_15510 PF00501 AMP-binding enzyme HIN88_15515 PF04751 Protein of unknown function (DUF615) HIN88_15520 PF00381 PTS HPr component phosphorylation site HIN88_15525 PF03668 P-loop ATPase protein family HIN88_15530 PF02569 Pantoate-beta-alanine ligase HIN88_15535 PF02548 Ketopantoate hydroxymethyltransferase HIN88_15540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HIN88_15545 PF01743 Poly A polymerase head domain HIN88_15545 PF12627 Probable RNA and SrmB- binding site of polymerase A HIN88_15545 PF12626 Polymerase A arginine-rich C-terminus HIN88_15555 PF03819 MazG nucleotide pyrophosphohydrolase domain HIN88_15565 PF02824 TGS domain HIN88_15565 PF04607 Region found in RelA / SpoT proteins HIN88_15565 PF13291 ACT domain HIN88_15570 PF05958 tRNA (Uracil-5-)-methyltransferase HIN88_15580 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_15585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HIN88_15585 PF00072 Response regulator receiver domain HIN88_15585 PF00672 HAMP domain HIN88_15585 PF01627 Hpt domain HIN88_15585 PF00512 His Kinase A (phospho-acceptor) domain HIN88_15585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_15590 PF00378 Enoyl-CoA hydratase/isomerase HIN88_15595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HIN88_15595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HIN88_15600 PF01261 Xylose isomerase-like TIM barrel HIN88_15610 PF00106 short chain dehydrogenase HIN88_15615 PF02233 NAD(P) transhydrogenase beta subunit HIN88_15620 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HIN88_15625 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HIN88_15625 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HIN88_15630 PF00892 EamA-like transporter family HIN88_15640 PF07690 Major Facilitator Superfamily HIN88_15645 PF01207 Dihydrouridine synthase (Dus) HIN88_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_15655 PF03466 LysR substrate binding domain HIN88_15665 PF00899 ThiF family HIN88_15670 PF00330 Aconitase family (aconitate hydratase) HIN88_15670 PF00694 Aconitase C-terminal domain HIN88_15675 PF01026 TatD related DNase HIN88_15690 PF00009 Elongation factor Tu GTP binding domain HIN88_15690 PF03144 Elongation factor Tu domain 2 HIN88_15690 PF16658 Class II release factor RF3, C-terminal domain HIN88_15710 PF00990 Diguanylate cyclase, GGDEF domain HIN88_15710 PF03707 Bacterial signalling protein N terminal repeat HIN88_15710 PF00563 EAL domain HIN88_15715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HIN88_15715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HIN88_15720 PF10369 Small subunit of acetolactate synthase HIN88_15725 PF00205 Thiamine pyrophosphate enzyme, central domain HIN88_15725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HIN88_15725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HIN88_15735 PF13603 Leucyl-tRNA synthetase, Domain 2 HIN88_15735 PF00133 tRNA synthetases class I (I, L, M and V) HIN88_15735 PF08264 Anticodon-binding domain of tRNA HIN88_15735 PF09334 tRNA synthetases class I (M) HIN88_15750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_15755 PF02687 FtsX-like permease family HIN88_15755 PF00005 ABC transporter HIN88_15755 PF12704 MacB-like periplasmic core domain HIN88_15760 PF02321 Outer membrane efflux protein HIN88_15775 PF00929 Exonuclease HIN88_15780 PF03193 RsgA GTPase HIN88_15790 PF00462 Glutaredoxin HIN88_15795 PF02556 Preprotein translocase subunit SecB HIN88_15805 PF01926 50S ribosome-binding GTPase HIN88_15805 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HIN88_15810 PF13360 PQQ-like domain HIN88_15820 PF13393 Histidyl-tRNA synthetase HIN88_15820 PF03129 Anticodon binding domain HIN88_15825 PF04551 GcpE protein HIN88_15830 PF13464 Domain of unknown function (DUF4115) HIN88_15840 PF04055 Radical SAM superfamily HIN88_15845 PF00334 Nucleoside diphosphate kinase HIN88_15850 PF04384 Iron-sulphur cluster assembly HIN88_15855 PF01569 PAP2 superfamily HIN88_15860 PF13439 Glycosyltransferase Family 4 HIN88_15860 PF00534 Glycosyl transferases group 1 HIN88_15865 PF11818 C-terminal domain of tail specific protease (DUF3340) HIN88_15865 PF17804 Tail specific protease N-terminal domain HIN88_15865 PF00595 PDZ domain HIN88_15865 PF03572 Peptidase family S41 HIN88_15870 PF00933 Glycosyl hydrolase family 3 N terminal domain HIN88_15880 PF00561 alpha/beta hydrolase fold HIN88_15885 PF00171 Aldehyde dehydrogenase family HIN88_15890 PF00171 Aldehyde dehydrogenase family HIN88_15895 PF01202 Shikimate kinase HIN88_15900 PF02447 GntP family permease HIN88_15905 PF01081 KDPG and KHG aldolase HIN88_15910 PF00920 Dehydratase family HIN88_15915 PF00871 Acetokinase family HIN88_15920 PF01515 Phosphate acetyl/butaryl transferase HIN88_15920 PF07085 DRTGG domain HIN88_15925 PF05681 Fumarate hydratase (Fumerase) HIN88_15925 PF05683 Fumarase C-terminus HIN88_15940 PF06689 ClpX C4-type zinc finger HIN88_15940 PF10431 C-terminal, D2-small domain, of ClpB protein HIN88_15940 PF07724 AAA domain (Cdc48 subfamily) HIN88_15945 PF00574 Clp protease HIN88_15950 PF05698 Bacterial trigger factor protein (TF) C-terminus HIN88_15950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HIN88_15950 PF05697 Bacterial trigger factor protein (TF) HIN88_15955 PF00593 TonB dependent receptor HIN88_15955 PF07715 TonB-dependent Receptor Plug Domain HIN88_15960 PF13640 2OG-Fe(II) oxygenase superfamily HIN88_15960 PF18331 PKHD-type hydroxylase C-terminal domain HIN88_15965 PF08502 LeuA allosteric (dimerisation) domain HIN88_15965 PF00682 HMGL-like HIN88_15970 PF00561 alpha/beta hydrolase fold HIN88_15975 PF00561 alpha/beta hydrolase fold HIN88_15975 PF07021 Methionine biosynthesis protein MetW HIN88_15985 PF01725 Ham1 family HIN88_15995 PF02416 mttA/Hcf106 family HIN88_16000 PF02416 mttA/Hcf106 family HIN88_16005 PF00902 Sec-independent protein translocase protein (TatC) HIN88_16025 PF01790 Prolipoprotein diacylglyceryl transferase HIN88_16040 PF00303 Thymidylate synthase HIN88_16045 PF00186 Dihydrofolate reductase HIN88_16055 PF01625 Peptide methionine sulfoxide reductase HIN88_16065 PF01618 MotA/TolQ/ExbB proton channel family HIN88_16075 PF00551 Formyl transferase HIN88_16075 PF01842 ACT domain HIN88_16085 PF00171 Aldehyde dehydrogenase family HIN88_16090 PF00830 Ribosomal L28 family HIN88_16095 PF00471 Ribosomal protein L33 HIN88_16100 PF02254 TrkA-N domain HIN88_16100 PF00999 Sodium/hydrogen exchanger family HIN88_16120 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HIN88_16125 PF00580 UvrD/REP helicase N-terminal domain HIN88_16125 PF13361 UvrD-like helicase C-terminal domain HIN88_16140 PF08272 Topoisomerase I zinc-ribbon-like HIN88_16140 PF01751 Toprim domain HIN88_16140 PF01396 Topoisomerase DNA binding C4 zinc finger HIN88_16140 PF01131 DNA topoisomerase HIN88_16150 PF01638 HxlR-like helix-turn-helix HIN88_16155 PF00107 Zinc-binding dehydrogenase HIN88_16155 PF08240 Alcohol dehydrogenase GroES-like domain HIN88_16160 PF04102 SlyX HIN88_16175 PF01810 LysE type translocator HIN88_16180 PF03279 Bacterial lipid A biosynthesis acyltransferase HIN88_16190 PF00375 Sodium:dicarboxylate symporter family HIN88_16200 PF02774 Semialdehyde dehydrogenase, dimerisation domain HIN88_16200 PF01118 Semialdehyde dehydrogenase, NAD binding domain HIN88_16220 PF01416 tRNA pseudouridine synthase HIN88_16230 PF01176 Translation initiation factor 1A / IF-1 HIN88_16245 PF00180 Isocitrate/isopropylmalate dehydrogenase HIN88_16255 PF00694 Aconitase C-terminal domain HIN88_16260 PF00330 Aconitase family (aconitate hydratase) HIN88_16270 PF03466 LysR substrate binding domain HIN88_16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_16280 PF00293 NUDIX domain HIN88_16285 PF00391 PEP-utilising enzyme, mobile domain HIN88_16285 PF01590 GAF domain HIN88_16285 PF02896 PEP-utilising enzyme, TIM barrel domain HIN88_16285 PF05524 PEP-utilising enzyme, N-terminal HIN88_16290 PF00141 Peroxidase HIN88_16295 PF12706 Beta-lactamase superfamily domain HIN88_16300 PF03466 LysR substrate binding domain HIN88_16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_16310 PF02798 Glutathione S-transferase, N-terminal domain HIN88_16315 PF08279 HTH domain HIN88_16315 PF13280 WYL domain HIN88_16320 PF13419 Haloacid dehalogenase-like hydrolase HIN88_16325 PF01479 S4 domain HIN88_16325 PF00849 RNA pseudouridylate synthase HIN88_16335 PF00575 S1 RNA binding domain HIN88_16335 PF12111 Polyribonucleotide phosphorylase C terminal HIN88_16335 PF10150 Ribonuclease E/G family HIN88_16340 PF13193 AMP-binding enzyme C-terminal domain HIN88_16340 PF00501 AMP-binding enzyme HIN88_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HIN88_16355 PF03466 LysR substrate binding domain HIN88_16365 PF06969 HemN C-terminal domain HIN88_16365 PF04055 Radical SAM superfamily HIN88_16375 PF01554 MatE HIN88_16380 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_16380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_16380 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HIN88_16385 PF08028 Acyl-CoA dehydrogenase, C-terminal domain HIN88_16385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_16390 PF03109 ABC1 family HIN88_16395 PF01197 Ribosomal protein L31 HIN88_16410 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HIN88_16430 PF03884 DNA gyrase inhibitor YacG HIN88_16435 PF00753 Metallo-beta-lactamase superfamily HIN88_16440 PF00762 Ferrochelatase HIN88_16450 PF01177 Asp/Glu/Hydantoin racemase HIN88_16470 PF01206 Sulfurtransferase TusA HIN88_16475 PF03471 Transporter associated domain HIN88_16475 PF00571 CBS domain HIN88_16480 PF00795 Carbon-nitrogen hydrolase HIN88_16485 PF01588 Putative tRNA binding domain HIN88_16495 PF07963 Prokaryotic N-terminal methylation motif HIN88_16495 PF08334 Type II secretion system (T2SS), protein G HIN88_16500 PF00482 Type II secretion system (T2SS), protein F HIN88_16505 PF18074 Primosomal protein N C-terminal domain HIN88_16505 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HIN88_16505 PF00271 Helicase conserved C-terminal domain HIN88_16505 PF00270 DEAD/DEAH box helicase HIN88_16505 PF17764 3′ DNA-binding domain (3′BD) HIN88_16510 PF00999 Sodium/hydrogen exchanger family HIN88_16510 PF02254 TrkA-N domain HIN88_16515 PF01430 Hsp33 protein HIN88_16525 PF00226 DnaJ domain HIN88_16525 PF01556 DnaJ C terminal domain HIN88_16535 PF01544 CorA-like Mg2+ transporter protein HIN88_16540 PF03725 3' exoribonuclease family, domain 2 HIN88_16540 PF00575 S1 RNA binding domain HIN88_16540 PF01138 3' exoribonuclease family, domain 1 HIN88_16540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HIN88_16540 PF00013 KH domain HIN88_16545 PF00312 Ribosomal protein S15 HIN88_16555 PF13538 UvrD-like helicase C-terminal domain HIN88_16560 PF13361 UvrD-like helicase C-terminal domain HIN88_16560 PF12705 PD-(D/E)XK nuclease superfamily HIN88_16560 PF00580 UvrD/REP helicase N-terminal domain HIN88_16565 PF17946 RecC C-terminal domain HIN88_16575 PF03976 Polyphosphate kinase 2 (PPK2) HIN88_16585 PF01209 ubiE/COQ5 methyltransferase family HIN88_16595 PF03109 ABC1 family HIN88_16600 PF01494 FAD binding domain HIN88_16605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HIN88_16615 PF01502 Phosphoribosyl-AMP cyclohydrolase HIN88_16630 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter HIN88_16630 PF00361 Proton-conducting membrane transporter HIN88_16630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HIN88_16630 PF13244 Domain of unknown function (DUF4040) HIN88_16635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HIN88_16640 PF00361 Proton-conducting membrane transporter HIN88_16650 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) HIN88_16660 PF02033 Ribosome-binding factor A HIN88_16665 PF11987 Translation-initiation factor 2 HIN88_16665 PF08364 Bacterial translation initiation factor IF-2 associated region HIN88_16665 PF00009 Elongation factor Tu GTP binding domain HIN88_16665 PF04760 Translation initiation factor IF-2, N-terminal region HIN88_16670 PF00575 S1 RNA binding domain HIN88_16670 PF08529 NusA N-terminal domain HIN88_16670 PF13184 NusA-like KH domain HIN88_16675 PF02576 RimP N-terminal domain HIN88_16675 PF17384 RimP C-terminal SH3 domain HIN88_16695 PF03840 Preprotein translocase SecG subunit HIN88_16700 PF00121 Triosephosphate isomerase HIN88_16705 PF00437 Type II/IV secretion system protein HIN88_16705 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HIN88_16710 PF00482 Type II secretion system (T2SS), protein F HIN88_16715 PF06750 Bacterial Peptidase A24 N-terminal domain HIN88_16715 PF01478 Type IV leader peptidase family HIN88_16720 PF01121 Dephospho-CoA kinase HIN88_16730 PF08032 RNA 2'-O ribose methyltransferase substrate binding HIN88_16730 PF00588 SpoU rRNA Methylase family HIN88_16735 PF06865 Pyrimidine/purine nucleoside phosphorylase HIN88_16745 PF02463 RecF/RecN/SMC N terminal domain HIN88_16750 PF02622 Uncharacterized ACR, COG1678 HIN88_16755 PF03652 Holliday junction resolvase HIN88_16760 PF13533 Biotin-lipoyl like HIN88_16785 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HIN88_16785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HIN88_16785 PF12833 Helix-turn-helix domain HIN88_16785 PF02805 Metal binding domain of Ada HIN88_16790 PF01066 CDP-alcohol phosphatidyltransferase HIN88_16800 PF02151 UvrB/uvrC motif HIN88_16800 PF01541 GIY-YIG catalytic domain HIN88_16800 PF08459 UvrC Helix-hairpin-helix N-terminal HIN88_16820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HIN88_16820 PF00378 Enoyl-CoA hydratase/isomerase HIN88_16820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HIN88_16825 PF00108 Thiolase, N-terminal domain HIN88_16825 PF02803 Thiolase, C-terminal domain HIN88_16845 PF00376 MerR family regulatory protein HIN88_16845 PF09278 MerR, DNA binding HIN88_16855 PF01323 DSBA-like thioredoxin domain HIN88_16870 PF00183 Hsp90 protein HIN88_16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_16885 PF03553 Na+/H+ antiporter family HIN88_16885 PF13726 Na+-H+ antiporter family HIN88_16890 PF00561 alpha/beta hydrolase fold HIN88_16910 PF00623 RNA polymerase Rpb1, domain 2 HIN88_16910 PF04997 RNA polymerase Rpb1, domain 1 HIN88_16910 PF05000 RNA polymerase Rpb1, domain 4 HIN88_16910 PF04998 RNA polymerase Rpb1, domain 5 HIN88_16910 PF04983 RNA polymerase Rpb1, domain 3 HIN88_16915 PF04560 RNA polymerase Rpb2, domain 7 HIN88_16915 PF00562 RNA polymerase Rpb2, domain 6 HIN88_16915 PF04565 RNA polymerase Rpb2, domain 3 HIN88_16915 PF04561 RNA polymerase Rpb2, domain 2 HIN88_16915 PF10385 RNA polymerase beta subunit external 1 domain HIN88_16915 PF04563 RNA polymerase beta subunit HIN88_16920 PF00542 Ribosomal protein L7/L12 C-terminal domain HIN88_16920 PF16320 Ribosomal protein L7/L12 dimerisation domain HIN88_16925 PF00466 Ribosomal protein L10 HIN88_16930 PF00687 Ribosomal protein L1p/L10e family HIN88_16935 PF03946 Ribosomal protein L11, N-terminal domain HIN88_16935 PF00298 Ribosomal protein L11, RNA binding domain HIN88_16940 PF02357 Transcription termination factor nusG HIN88_16940 PF00467 KOW motif HIN88_16945 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HIN88_16955 PF03144 Elongation factor Tu domain 2 HIN88_16955 PF00009 Elongation factor Tu GTP binding domain HIN88_16955 PF03143 Elongation factor Tu C-terminal domain HIN88_16980 PF04715 Anthranilate synthase component I, N terminal region HIN88_16980 PF00425 chorismate binding enzyme HIN88_16985 PF13419 Haloacid dehalogenase-like hydrolase HIN88_16990 PF00498 FHA domain HIN88_16990 PF12401 Protein of unknown function (DUF2662) HIN88_16995 PF03958 Bacterial type II/III secretion system short domain HIN88_16995 PF00263 Bacterial type II and III secretion system protein HIN88_17010 PF00816 H-NS histone family HIN88_17035 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HIN88_17035 PF03900 Porphobilinogen deaminase, C-terminal domain HIN88_17040 PF00072 Response regulator receiver domain HIN88_17040 PF04397 LytTr DNA-binding domain HIN88_17045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_17045 PF07694 5TMR of 5TMR-LYT HIN88_17045 PF06580 Histidine kinase HIN88_17050 PF14698 Argininosuccinate lyase C-terminal HIN88_17050 PF00206 Lyase HIN88_17055 PF04362 Bacterial Fe(2+) trafficking HIN88_17060 PF01895 PhoU domain HIN88_17065 PF02321 Outer membrane efflux protein HIN88_17070 PF00892 EamA-like transporter family HIN88_17085 PF01964 Radical SAM ThiC family HIN88_17085 PF13667 ThiC-associated domain HIN88_17090 PF00293 NUDIX domain HIN88_17095 PF00149 Calcineurin-like phosphoesterase HIN88_17100 PF01258 Prokaryotic dksA/traR C4-type zinc finger HIN88_17105 PF00749 tRNA synthetases class I (E and Q), catalytic domain HIN88_17110 PF01098 Cell cycle protein HIN88_17115 PF02875 Mur ligase family, glutamate ligase domain HIN88_17115 PF08245 Mur ligase middle domain HIN88_17125 PF02421 Ferrous iron transport protein B HIN88_17125 PF07670 Nucleoside recognition HIN88_17125 PF07664 Ferrous iron transport protein B C terminus HIN88_17135 PF02899 Phage integrase, N-terminal SAM-like domain HIN88_17135 PF00589 Phage integrase family HIN88_17140 PF10411 Disulfide bond isomerase protein N-terminus HIN88_17140 PF13098 Thioredoxin-like domain HIN88_17145 PF03447 Homoserine dehydrogenase, NAD binding domain HIN88_17145 PF00742 Homoserine dehydrogenase HIN88_17145 PF01842 ACT domain HIN88_17150 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_17155 PF00768 D-alanyl-D-alanine carboxypeptidase HIN88_17160 PF00196 Bacterial regulatory proteins, luxR family HIN88_17160 PF00072 Response regulator receiver domain HIN88_17165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_17165 PF00512 His Kinase A (phospho-acceptor) domain HIN88_17170 PF00158 Sigma-54 interaction domain HIN88_17170 PF02954 Bacterial regulatory protein, Fis family HIN88_17170 PF00072 Response regulator receiver domain HIN88_17175 PF00595 PDZ domain HIN88_17175 PF03572 Peptidase family S41 HIN88_17180 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HIN88_17180 PF01676 Metalloenzyme superfamily HIN88_17185 PF03739 Lipopolysaccharide export system permease LptF/LptG HIN88_17195 PF00883 Cytosol aminopeptidase family, catalytic domain HIN88_17195 PF02789 Cytosol aminopeptidase family, N-terminal domain HIN88_17215 PF00677 Lumazine binding domain HIN88_17225 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HIN88_17225 PF01872 RibD C-terminal domain HIN88_17230 PF03477 ATP cone domain HIN88_17235 PF00909 Ammonium Transporter Family HIN88_17240 PF00543 Nitrogen regulatory protein P-II HIN88_17250 PF13335 Magnesium chelatase, subunit ChlI C-terminal HIN88_17250 PF01078 Magnesium chelatase, subunit ChlI HIN88_17265 PF00149 Calcineurin-like phosphoesterase HIN88_17280 PF00899 ThiF family HIN88_17280 PF14461 Prokaryotic E2 family B HIN88_17300 PF13411 MerR HTH family regulatory protein HIN88_17315 PF02421 Ferrous iron transport protein B HIN88_17315 PF07670 Nucleoside recognition HIN88_17315 PF07664 Ferrous iron transport protein B C terminus HIN88_17325 PF00873 AcrB/AcrD/AcrF family HIN88_17330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HIN88_17350 PF07731 Multicopper oxidase HIN88_17350 PF07732 Multicopper oxidase HIN88_17350 PF00394 Multicopper oxidase HIN88_17360 PF00486 Transcriptional regulatory protein, C terminal HIN88_17360 PF00072 Response regulator receiver domain HIN88_17365 PF00672 HAMP domain HIN88_17365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HIN88_17365 PF00512 His Kinase A (phospho-acceptor) domain HIN88_17410 PF00665 Integrase core domain HIN88_17420 PF13335 Magnesium chelatase, subunit ChlI C-terminal HIN88_17420 PF01078 Magnesium chelatase, subunit ChlI HIN88_17425 PF00392 Bacterial regulatory proteins, gntR family HIN88_17425 PF00155 Aminotransferase class I and II HIN88_17430 PF00596 Class II Aldolase and Adducin N-terminal domain HIN88_17435 PF00701 Dihydrodipicolinate synthetase family HIN88_17445 PF03573 outer membrane porin, OprD family HIN88_17450 PF00719 Inorganic pyrophosphatase HIN88_17465 PF13193 AMP-binding enzyme C-terminal domain HIN88_17465 PF00501 AMP-binding enzyme HIN88_17470 PF03989 DNA gyrase C-terminal domain, beta-propeller HIN88_17470 PF00521 DNA gyrase/topoisomerase IV, subunit A HIN88_17475 PF07690 Major Facilitator Superfamily HIN88_17480 PF03458 UPF0126 domain HIN88_17485 PF02810 SEC-C motif HIN88_17490 PF03471 Transporter associated domain HIN88_17490 PF03741 Integral membrane protein TerC family HIN88_17495 PF03641 Possible lysine decarboxylase HIN88_17500 PF07690 Major Facilitator Superfamily HIN88_17510 PF11799 impB/mucB/samB family C-terminal domain HIN88_17510 PF11798 IMS family HHH motif HIN88_17510 PF00817 impB/mucB/samB family HIN88_17525 PF11842 Domain of unknown function (DUF3362) HIN88_17525 PF04055 Radical SAM superfamily HIN88_17525 PF08497 Radical SAM N-terminal HIN88_17545 PF03358 NADPH-dependent FMN reductase HIN88_17555 PF00291 Pyridoxal-phosphate dependent enzyme HIN88_17590 PF00440 Bacterial regulatory proteins, tetR family HIN88_17615 PF01327 Polypeptide deformylase HIN88_17625 PF02481 DNA recombination-mediator protein A HIN88_17625 PF17782 DprA winged helix domain HIN88_17630 PF01300 Telomere recombination HIN88_17635 PF00892 EamA-like transporter family HIN88_17640 PF00440 Bacterial regulatory proteins, tetR family HIN88_17645 PF07690 Major Facilitator Superfamily HIN88_17655 PF00255 Glutathione peroxidase HIN88_17665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HIN88_17670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HIN88_17670 PF02874 ATP synthase alpha/beta family, beta-barrel domain HIN88_17675 PF00231 ATP synthase HIN88_17680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HIN88_17680 PF00306 ATP synthase alpha/beta chain, C terminal domain HIN88_17680 PF02874 ATP synthase alpha/beta family, beta-barrel domain HIN88_17685 PF00213 ATP synthase delta (OSCP) subunit HIN88_17690 PF00430 ATP synthase B/B' CF(0) HIN88_17695 PF00137 ATP synthase subunit C HIN88_17700 PF00119 ATP synthase A chain HIN88_17720 PF00005 ABC transporter HIN88_17725 PF00950 ABC 3 transport family HIN88_17730 PF01810 LysE type translocator HIN88_17735 PF04261 Dyp-type peroxidase family HIN88_17740 PF03949 Malic enzyme, NAD binding domain HIN88_17740 PF00390 Malic enzyme, N-terminal domain HIN88_17745 PF05746 DALR anticodon binding domain HIN88_17745 PF00750 tRNA synthetases class I (R) HIN88_17745 PF03485 Arginyl tRNA synthetase N terminal domain HIN88_17765 PF05726 Pirin C-terminal cupin domain HIN88_17765 PF02678 Pirin HIN88_17775 PF03551 Transcriptional regulator PadR-like family HIN88_17780 PF01909 Nucleotidyltransferase domain HIN88_17780 PF13427 Domain of unknown function (DUF4111) HIN88_17785 PF00958 GMP synthase C terminal domain HIN88_17785 PF00117 Glutamine amidotransferase class-I HIN88_17785 PF02540 NAD synthase HIN88_17790 PF04286 Protein of unknown function (DUF445) HIN88_17795 PF07681 DoxX HIN88_17800 PF09335 SNARE associated Golgi protein HIN88_17815 PF13614 AAA domain HIN88_17825 PF01722 BolA-like protein HIN88_17840 PF01648 4'-phosphopantetheinyl transferase superfamily HIN88_17845 PF12697 Alpha/beta hydrolase family HIN88_17860 PF00550 Phosphopantetheine attachment site HIN88_17860 PF00668 Condensation domain HIN88_17860 PF00975 Thioesterase domain HIN88_17860 PF13193 AMP-binding enzyme C-terminal domain HIN88_17860 PF00501 AMP-binding enzyme HIN88_17865 PF08242 Methyltransferase domain HIN88_17865 PF02801 Beta-ketoacyl synthase, C-terminal domain HIN88_17865 PF16197 Ketoacyl-synthetase C-terminal extension HIN88_17865 PF00550 Phosphopantetheine attachment site HIN88_17865 PF14765 Polyketide synthase dehydratase HIN88_17865 PF00109 Beta-ketoacyl synthase, N-terminal domain HIN88_17865 PF00975 Thioesterase domain HIN88_17870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_17870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_17870 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_17875 PF00501 AMP-binding enzyme HIN88_17880 PF03472 Autoinducer binding domain HIN88_17880 PF00196 Bacterial regulatory proteins, luxR family HIN88_17890 PF00765 Autoinducer synthase HIN88_17895 PF00083 Sugar (and other) transporter HIN88_17895 PF07690 Major Facilitator Superfamily HIN88_17900 PF00378 Enoyl-CoA hydratase/isomerase HIN88_17905 PF00378 Enoyl-CoA hydratase/isomerase HIN88_17910 PF02770 Acyl-CoA dehydrogenase, middle domain HIN88_17910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HIN88_17910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HIN88_17915 PF13193 AMP-binding enzyme C-terminal domain HIN88_17915 PF00501 AMP-binding enzyme HIN88_17920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HIN88_17920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HIN88_17925 PF00171 Aldehyde dehydrogenase family HIN88_17935 PF00324 Amino acid permease HIN88_17940 PF00324 Amino acid permease HIN88_17945 PF01042 Endoribonuclease L-PSP HIN88_17950 PF01168 Alanine racemase, N-terminal domain HIN88_17950 PF00842 Alanine racemase, C-terminal domain HIN88_17955 PF01266 FAD dependent oxidoreductase HIN88_17960 PF01037 Lrp/AsnC ligand binding domain HIN88_17970 PF07715 TonB-dependent Receptor Plug Domain HIN88_17970 PF00593 TonB dependent receptor HIN88_17985 PF00849 RNA pseudouridylate synthase HIN88_17995 PF00106 short chain dehydrogenase HIN88_18060 PF00330 Aconitase family (aconitate hydratase) HIN88_18060 PF00694 Aconitase C-terminal domain HIN88_18065 PF00285 Citrate synthase, C-terminal domain HIN88_18075 PF00392 Bacterial regulatory proteins, gntR family HIN88_18075 PF07729 FCD domain HIN88_18080 PF00155 Aminotransferase class I and II HIN88_18085 PF01565 FAD binding domain HIN88_18085 PF09330 D-lactate dehydrogenase, membrane binding HIN88_18090 PF01070 FMN-dependent dehydrogenase HIN88_18095 PF07729 FCD domain HIN88_18095 PF00392 Bacterial regulatory proteins, gntR family HIN88_18100 PF02652 L-lactate permease HIN88_18105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HIN88_18105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HIN88_18105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HIN88_18105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HIN88_18115 PF16363 GDP-mannose 4,6 dehydratase HIN88_18120 PF00342 Phosphoglucose isomerase HIN88_18125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HIN88_18125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HIN88_18125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HIN88_18130 PF00483 Nucleotidyl transferase HIN88_18135 PF02397 Bacterial sugar transferase HIN88_18140 PF13477 Glycosyl transferase 4-like HIN88_18140 PF00534 Glycosyl transferases group 1 HIN88_18145 PF00534 Glycosyl transferases group 1 HIN88_18145 PF13439 Glycosyltransferase Family 4 HIN88_18155 PF13439 Glycosyltransferase Family 4 HIN88_18155 PF00534 Glycosyl transferases group 1 HIN88_18160 PF00535 Glycosyl transferase family 2 HIN88_18170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HIN88_18170 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HIN88_18170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HIN88_18175 PF02563 Polysaccharide biosynthesis/export protein HIN88_18175 PF18412 Outer-membrane lipoprotein Wza C-terminal domain HIN88_18175 PF10531 SLBB domain HIN88_18180 PF01451 Low molecular weight phosphotyrosine protein phosphatase HIN88_18185 PF13807 G-rich domain on putative tyrosine kinase HIN88_18185 PF13614 AAA domain HIN88_18185 PF02706 Chain length determinant protein HIN88_18190 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HIN88_18190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HIN88_18195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HIN88_18195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HIN88_18200 PF03023 Lipid II flippase MurJ HIN88_18205 PF01510 N-acetylmuramoyl-L-alanine amidase HIN88_18210 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HIN88_18210 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HIN88_18220 PF05506 Domain of unknown function (DUF756) HIN88_18220 PF04185 Phosphoesterase family HIN88_18225 PF01138 3' exoribonuclease family, domain 1 HIN88_18225 PF03725 3' exoribonuclease family, domain 2 HIN88_18230 PF00487 Fatty acid desaturase HIN88_18235 PF00175 Oxidoreductase NAD-binding domain HIN88_18240 PF00440 Bacterial regulatory proteins, tetR family HIN88_18245 PF08360 QacR-like protein, C-terminal region HIN88_18245 PF00440 Bacterial regulatory proteins, tetR family HIN88_18250 PF01323 DSBA-like thioredoxin domain HIN88_18260 PF13419 Haloacid dehalogenase-like hydrolase HIN88_18265 PF00106 short chain dehydrogenase HIN88_18280 PF00696 Amino acid kinase family HIN88_18280 PF00583 Acetyltransferase (GNAT) family HIN88_18285 PF09084 NMT1/THI5 like HIN88_18290 PF09084 NMT1/THI5 like HIN88_18295 PF00296 Luciferase-like monooxygenase HIN88_18300 PF00528 Binding-protein-dependent transport system inner membrane component HIN88_18305 PF00005 ABC transporter HIN88_18310 PF08362 YcdC-like protein, C-terminal region HIN88_18310 PF00440 Bacterial regulatory proteins, tetR family HIN88_18315 PF01048 Phosphorylase superfamily HIN88_18325 PF06574 FAD synthetase HIN88_18325 PF01687 Riboflavin kinase HIN88_18330 PF08264 Anticodon-binding domain of tRNA HIN88_18330 PF00133 tRNA synthetases class I (I, L, M and V) HIN88_18330 PF06827 Zinc finger found in FPG and IleRS HIN88_18335 PF01252 Signal peptidase (SPase) II HIN88_18340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HIN88_18380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HIN88_18385 PF07859 alpha/beta hydrolase fold HIN88_18410 PF01025 GrpE HIN88_18415 PF00012 Hsp70 protein HIN88_18435 PF13406 Transglycosylase SLT domain HIN88_18440 PF02222 ATP-grasp domain HIN88_18440 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HIN88_18445 PF00731 AIR carboxylase HIN88_18455 PF02875 Mur ligase family, glutamate ligase domain HIN88_18455 PF08245 Mur ligase middle domain HIN88_18455 PF01225 Mur ligase family, catalytic domain HIN88_18465 PF01569 PAP2 superfamily HIN88_18470 PF03741 Integral membrane protein TerC family HIN88_18480 PF03738 Glutathionylspermidine synthase preATP-grasp HIN88_18485 PF00355 Rieske [2Fe-2S] domain HIN88_18490 PF01979 Amidohydrolase family HIN88_18495 PF00156 Phosphoribosyl transferase domain HIN88_18505 PF13098 Thioredoxin-like domain HIN88_18505 PF10411 Disulfide bond isomerase protein N-terminus HIN88_18510 PF16916 Dimerisation domain of Zinc Transporter HIN88_18510 PF01545 Cation efflux family HIN88_18515 PF02583 Metal-sensitive transcriptional repressor HIN88_18520 PF01926 50S ribosome-binding GTPase HIN88_18520 PF12631 MnmE helical domain HIN88_18520 PF10396 GTP-binding protein TrmE N-terminus HIN88_18525 PF14849 YidC periplasmic domain HIN88_18525 PF02096 60Kd inner membrane protein HIN88_18530 PF01809 Putative membrane protein insertion efficiency factor HIN88_18535 PF00825 Ribonuclease P HIN88_18540 PF00468 Ribosomal protein L34 HIN88_18560 PF13635 Domain of unknown function (DUF4143) HIN88_18560 PF13173 AAA domain HIN88_18645 PF00239 Resolvase, N terminal domain HIN88_18645 PF02796 Helix-turn-helix domain of resolvase HIN88_18650 PF07690 Major Facilitator Superfamily HIN88_18655 PF02909 Tetracyclin repressor-like, C-terminal domain HIN88_18655 PF00440 Bacterial regulatory proteins, tetR family HIN88_18660 PF05973 Phage derived protein Gp49-like (DUF891) HIN88_18665 PF01381 Helix-turn-helix HIN88_18690 PF01636 Phosphotransferase enzyme family HIN88_18695 PF02796 Helix-turn-helix domain of resolvase HIN88_18695 PF00239 Resolvase, N terminal domain HIN88_18705 PF02417 Chromate transporter HIN88_18710 PF09828 Chromate resistance exported protein HIN88_18725 PF13610 DDE domain HIN88_18735 PF01636 Phosphotransferase enzyme family HIN88_18740 PF10706 Aminoglycoside-2''-adenylyltransferase HIN88_18745 PF13610 DDE domain HIN88_18750 PF00905 Penicillin binding protein transpeptidase domain HIN88_18755 PF13610 DDE domain HIN88_18765 PF01636 Phosphotransferase enzyme family HIN88_18770 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase HIN88_18790 PF02332 Methane/Phenol/Toluene Hydroxylase HIN88_18805 PF00809 Pterin binding enzyme HIN88_18815 PF01131 DNA topoisomerase HIN88_18815 PF01751 Toprim domain HIN88_18820 PF00186 Dihydrofolate reductase HIN88_18825 PF00303 Thymidylate synthase HIN88_18835 PF13610 DDE domain HIN88_18845 PF11798 IMS family HHH motif HIN88_18845 PF00817 impB/mucB/samB family HIN88_18845 PF13438 Domain of unknown function (DUF4113) HIN88_18845 PF11799 impB/mucB/samB family C-terminal domain HIN88_18850 PF00717 Peptidase S24-like HIN88_18850 PF01726 LexA DNA binding domain HIN88_18870 PF04233 Phage Mu protein F like protein HIN88_18875 PF00589 Phage integrase family HIN88_18875 PF13356 Arm DNA-binding domain HIN88_18915 PF13614 AAA domain HIN88_18920 PF02195 ParB-like nuclease domain HIN88_18920 PF17762 HTH domain found in ParB protein HIN88_18940 PF02796 Helix-turn-helix domain of resolvase HIN88_18940 PF00665 Integrase core domain HIN88_18945 PF01695 IstB-like ATP binding protein HIN88_18990 PF07715 TonB-dependent Receptor Plug Domain HIN88_18990 PF00593 TonB dependent receptor HIN88_19025 PF03389 MobA/MobL family