locus-tag class description CTI08_00005 PF08299 Bacterial dnaA protein helix-turn-helix CTI08_00005 PF00308 Bacterial dnaA protein CTI08_00005 PF11638 DnaA N-terminal domain CTI08_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CTI08_00010 PF02767 DNA polymerase III beta subunit, central domain CTI08_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CTI08_00015 PF02463 RecF/RecN/SMC N terminal domain CTI08_00020 PF00204 DNA gyrase B CTI08_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CTI08_00020 PF18053 DNA gyrase B subunit insert domain CTI08_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_00020 PF01751 Toprim domain CTI08_00030 PF09335 SNARE associated Golgi protein CTI08_00035 PF12848 ABC transporter CTI08_00035 PF00005 ABC transporter CTI08_00055 PF01521 Iron-sulphur cluster biosynthesis CTI08_00060 PF00561 alpha/beta hydrolase fold CTI08_00065 PF03702 Anhydro-N-acetylmuramic acid kinase CTI08_00070 PF00579 tRNA synthetases class I (W and Y) CTI08_00115 PF00209 Sodium:neurotransmitter symporter family CTI08_00125 PF01029 NusB family CTI08_00125 PF01189 16S rRNA methyltransferase RsmB/F CTI08_00130 PF02911 Formyl transferase, C-terminal domain CTI08_00130 PF00551 Formyl transferase CTI08_00135 PF00920 Dehydratase family CTI08_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_00150 PF03466 LysR substrate binding domain CTI08_00155 PF00860 Permease family CTI08_00160 PF00311 Phosphoenolpyruvate carboxylase CTI08_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region CTI08_00165 PF00440 Bacterial regulatory proteins, tetR family CTI08_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_00175 PF00873 AcrB/AcrD/AcrF family CTI08_00185 PF01556 DnaJ C terminal domain CTI08_00185 PF00226 DnaJ domain CTI08_00185 PF00684 DnaJ central domain CTI08_00195 PF01113 Dihydrodipicolinate reductase, N-terminus CTI08_00195 PF05173 Dihydrodipicolinate reductase, C-terminus CTI08_00205 PF07690 Major Facilitator Superfamily CTI08_00210 PF00248 Aldo/keto reductase family CTI08_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_00215 PF03466 LysR substrate binding domain CTI08_00230 PF00155 Aminotransferase class I and II CTI08_00230 PF00392 Bacterial regulatory proteins, gntR family CTI08_00235 PF00107 Zinc-binding dehydrogenase CTI08_00235 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_00240 PF03352 Methyladenine glycosylase CTI08_00255 PF00633 Helix-hairpin-helix motif CTI08_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein CTI08_00255 PF14815 NUDIX domain CTI08_00255 PF10576 Iron-sulfur binding domain of endonuclease III CTI08_00270 PF07043 Protein of unknown function (DUF1328) CTI08_00275 PF03692 Putative zinc- or iron-chelating domain CTI08_00280 PF07995 Glucose / Sorbosone dehydrogenase CTI08_00285 PF16193 AAA C-terminal domain CTI08_00285 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_00285 PF12002 MgsA AAA+ ATPase C terminal CTI08_00290 PF01226 Formate/nitrite transporter CTI08_00305 PF01259 SAICAR synthetase CTI08_00315 PF00701 Dihydrodipicolinate synthetase family CTI08_00320 PF00857 Isochorismatase family CTI08_00325 PF01758 Sodium Bile acid symporter family CTI08_00330 PF01554 MatE CTI08_00335 PF04463 Protein of unknown function (DUF523) CTI08_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTI08_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTI08_00355 PF14497 Glutathione S-transferase, C-terminal domain CTI08_00355 PF02798 Glutathione S-transferase, N-terminal domain CTI08_00365 PF00324 Amino acid permease CTI08_00375 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTI08_00375 PF07683 Cobalamin synthesis protein cobW C-terminal domain CTI08_00385 PF00392 Bacterial regulatory proteins, gntR family CTI08_00385 PF07702 UTRA domain CTI08_00390 PF05962 HutD CTI08_00395 PF01175 Urocanase Rossmann-like domain CTI08_00395 PF17392 Urocanase C-terminal domain CTI08_00395 PF17391 Urocanase N-terminal domain CTI08_00400 PF00221 Aromatic amino acid lyase CTI08_00405 PF00324 Amino acid permease CTI08_00410 PF01979 Amidohydrolase family CTI08_00415 PF00491 Arginase family CTI08_00425 PF13419 Haloacid dehalogenase-like hydrolase CTI08_00430 PF01177 Asp/Glu/Hydantoin racemase CTI08_00445 PF01026 TatD related DNase CTI08_00460 PF07693 KAP family P-loop domain CTI08_00470 PF00425 chorismate binding enzyme CTI08_00475 PF00550 Phosphopantetheine attachment site CTI08_00475 PF00857 Isochorismatase family CTI08_00480 PF00106 short chain dehydrogenase CTI08_00485 PF00550 Phosphopantetheine attachment site CTI08_00485 PF00668 Condensation domain CTI08_00485 PF00501 AMP-binding enzyme CTI08_00490 PF08242 Methyltransferase domain CTI08_00490 PF00501 AMP-binding enzyme CTI08_00490 PF00550 Phosphopantetheine attachment site CTI08_00490 PF00668 Condensation domain CTI08_00495 PF00550 Phosphopantetheine attachment site CTI08_00495 PF00975 Thioesterase domain CTI08_00495 PF13193 AMP-binding enzyme C-terminal domain CTI08_00495 PF00501 AMP-binding enzyme CTI08_00495 PF00668 Condensation domain CTI08_00500 PF13193 AMP-binding enzyme C-terminal domain CTI08_00500 PF00501 AMP-binding enzyme CTI08_00505 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CTI08_00510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CTI08_00510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CTI08_00525 PF01648 4'-phosphopantetheinyl transferase superfamily CTI08_00525 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CTI08_00530 PF00975 Thioesterase domain CTI08_00535 PF07715 TonB-dependent Receptor Plug Domain CTI08_00535 PF00593 TonB dependent receptor CTI08_00550 PF01554 MatE CTI08_00555 PF03412 Peptidase C39 family CTI08_00555 PF00005 ABC transporter CTI08_00555 PF00664 ABC transporter transmembrane region CTI08_00580 PF13737 Transposase DDE domain CTI08_00615 PF15978 Tn7-like transposition protein D CTI08_00615 PF06527 TniQ CTI08_00620 PF11426 Tn7 transposition regulator TnsC CTI08_00620 PF13401 AAA domain CTI08_00625 PF00665 Integrase core domain CTI08_00630 PF08722 TnsA endonuclease N terminal CTI08_00630 PF08721 TnsA endonuclease C terminal CTI08_00635 PF01380 SIS domain CTI08_00640 PF12804 MobA-like NTP transferase domain CTI08_00640 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_00640 PF14602 Hexapeptide repeat of succinyl-transferase CTI08_00645 PF04608 Phosphatidylglycerophosphatase A CTI08_00650 PF02769 AIR synthase related protein, C-terminal domain CTI08_00650 PF00586 AIR synthase related protein, N-terminal domain CTI08_00655 PF01029 NusB family CTI08_00660 PF00885 6,7-dimethyl-8-ribityllumazine synthase CTI08_00665 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CTI08_00665 PF00925 GTP cyclohydrolase II CTI08_00695 PF02580 D-Tyr-tRNA(Tyr) deacylase CTI08_00700 PF06628 Catalase-related immune-responsive CTI08_00700 PF00199 Catalase CTI08_00710 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CTI08_00710 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CTI08_00715 PF00581 Rhodanese-like domain CTI08_00720 PF02666 Phosphatidylserine decarboxylase CTI08_00725 PF03069 Acetamidase/Formamidase family CTI08_00740 PF00512 His Kinase A (phospho-acceptor) domain CTI08_00740 PF00989 PAS fold CTI08_00740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_00740 PF11808 Phosphate regulon sensor protein PhoR CTI08_00745 PF00486 Transcriptional regulatory protein, C terminal CTI08_00745 PF00072 Response regulator receiver domain CTI08_00755 PF00106 short chain dehydrogenase CTI08_00760 PF01554 MatE CTI08_00765 PF00155 Aminotransferase class I and II CTI08_00770 PF04286 Protein of unknown function (DUF445) CTI08_00785 PF04262 Glutamate-cysteine ligase CTI08_00790 PF02600 Disulfide bond formation protein DsbB CTI08_00795 PF04717 Type VI secretion system, phage-baseplate injector CTI08_00800 PF00182 Chitinase class I CTI08_00825 PF05728 Uncharacterised protein family (UPF0227) CTI08_00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_00830 PF01751 Toprim domain CTI08_00830 PF00204 DNA gyrase B CTI08_00830 PF00986 DNA gyrase B subunit, carboxyl terminus CTI08_00835 PF04115 Ureidoglycolate lyase CTI08_00840 PF03561 Allantoicase repeat CTI08_00845 PF01494 FAD binding domain CTI08_00855 PF00860 Permease family CTI08_00860 PF00576 HIUase/Transthyretin family CTI08_00890 PF11412 Disulphide bond corrector protein DsbC CTI08_00890 PF02683 Cytochrome C biogenesis protein transmembrane region CTI08_00900 PF07859 alpha/beta hydrolase fold CTI08_00910 PF03960 ArsC family CTI08_00915 PF03372 Endonuclease/Exonuclease/phosphatase family CTI08_00920 PF00156 Phosphoribosyl transferase domain CTI08_00925 PF00593 TonB dependent receptor CTI08_00925 PF07715 TonB-dependent Receptor Plug Domain CTI08_00935 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CTI08_00935 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CTI08_00940 PF03033 Glycosyltransferase family 28 N-terminal domain CTI08_00940 PF04101 Glycosyltransferase family 28 C-terminal domain CTI08_00945 PF02875 Mur ligase family, glutamate ligase domain CTI08_00945 PF01225 Mur ligase family, catalytic domain CTI08_00945 PF08245 Mur ligase middle domain CTI08_00950 PF07478 D-ala D-ala ligase C-terminus CTI08_00950 PF01820 D-ala D-ala ligase N-terminus CTI08_00955 PF03799 Cell division protein FtsQ CTI08_00955 PF08478 POTRA domain, FtsQ-type CTI08_00960 PF02491 SHS2 domain inserted in FTSA CTI08_00965 PF00091 Tubulin/FtsZ family, GTPase domain CTI08_00965 PF12327 FtsZ family, C-terminal domain CTI08_00970 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CTI08_00980 PF01551 Peptidase family M23 CTI08_00985 PF00456 Transketolase, thiamine diphosphate binding domain CTI08_00985 PF17831 Pyruvate dehydrogenase E1 component middle domain CTI08_00990 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTI08_00990 PF00364 Biotin-requiring enzyme CTI08_00990 PF02817 e3 binding domain CTI08_01000 PF01169 Uncharacterized protein family UPF0016 CTI08_01005 PF00593 TonB dependent receptor CTI08_01005 PF07715 TonB-dependent Receptor Plug Domain CTI08_01010 PF01613 Flavin reductase like domain CTI08_01010 PF00258 Flavodoxin CTI08_01015 PF03692 Putative zinc- or iron-chelating domain CTI08_01020 PF00571 CBS domain CTI08_01020 PF00478 IMP dehydrogenase / GMP reductase domain CTI08_01025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTI08_01025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTI08_01025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTI08_01025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTI08_01030 PF01243 Pyridoxamine 5'-phosphate oxidase CTI08_01030 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CTI08_01035 PF01368 DHH family CTI08_01035 PF17768 RecJ OB domain CTI08_01035 PF02272 DHHA1 domain CTI08_01055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTI08_01060 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CTI08_01065 PF04452 RNA methyltransferase CTI08_01070 PF00924 Mechanosensitive ion channel CTI08_01080 PF16177 Acetyl-coenzyme A synthetase N-terminus CTI08_01080 PF00501 AMP-binding enzyme CTI08_01080 PF13193 AMP-binding enzyme C-terminal domain CTI08_01085 PF00857 Isochorismatase family CTI08_01090 PF01037 Lrp/AsnC ligand binding domain CTI08_01095 PF00296 Luciferase-like monooxygenase CTI08_01100 PF03358 NADPH-dependent FMN reductase CTI08_01105 PF00196 Bacterial regulatory proteins, luxR family CTI08_01105 PF00072 Response regulator receiver domain CTI08_01115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_01115 PF00672 HAMP domain CTI08_01115 PF01627 Hpt domain CTI08_01115 PF00512 His Kinase A (phospho-acceptor) domain CTI08_01115 PF00072 Response regulator receiver domain CTI08_01120 PF04341 Protein of unknown function, DUF485 CTI08_01125 PF00474 Sodium:solute symporter family CTI08_01135 PF02028 BCCT, betaine/carnitine/choline family transporter CTI08_01160 PF00005 ABC transporter CTI08_01160 PF17755 UvrA DNA-binding domain CTI08_01160 PF17760 UvrA interaction domain CTI08_01165 PF16925 Tetracyclin repressor-like, C-terminal domain CTI08_01165 PF00440 Bacterial regulatory proteins, tetR family CTI08_01170 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_01170 PF00107 Zinc-binding dehydrogenase CTI08_01180 PF06942 GlpM protein CTI08_01185 PF03070 TENA/THI-4/PQQC family CTI08_01185 PF08543 Phosphomethylpyrimidine kinase CTI08_01185 PF02581 Thiamine monophosphate synthase CTI08_01195 PF07690 Major Facilitator Superfamily CTI08_01200 PF00436 Single-strand binding protein family CTI08_01210 PF03591 AzlC protein CTI08_01220 PF00324 Amino acid permease CTI08_01225 PF00392 Bacterial regulatory proteins, gntR family CTI08_01225 PF00155 Aminotransferase class I and II CTI08_01230 PF00202 Aminotransferase class-III CTI08_01235 PF00171 Aldehyde dehydrogenase family CTI08_01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_01245 PF00857 Isochorismatase family CTI08_01250 PF02678 Pirin CTI08_01250 PF05726 Pirin C-terminal cupin domain CTI08_01255 PF01593 Flavin containing amine oxidoreductase CTI08_01275 PF07690 Major Facilitator Superfamily CTI08_01280 PF03466 LysR substrate binding domain CTI08_01280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_01305 PF00248 Aldo/keto reductase family CTI08_01310 PF12833 Helix-turn-helix domain CTI08_01310 PF02311 AraC-like ligand binding domain CTI08_01330 PF01638 HxlR-like helix-turn-helix CTI08_01345 PF01638 HxlR-like helix-turn-helix CTI08_01355 PF02525 Flavodoxin-like fold CTI08_01375 PF12833 Helix-turn-helix domain CTI08_01385 PF02705 K+ potassium transporter CTI08_01410 PF00230 Major intrinsic protein CTI08_01425 PF00977 Histidine biosynthesis protein CTI08_01430 PF01636 Phosphotransferase enzyme family CTI08_01455 PF00977 Histidine biosynthesis protein CTI08_01470 PF00117 Glutamine amidotransferase class-I CTI08_01475 PF00475 Imidazoleglycerol-phosphate dehydratase CTI08_01495 PF00583 Acetyltransferase (GNAT) family CTI08_01500 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CTI08_01500 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CTI08_01510 PF00672 HAMP domain CTI08_01510 PF00512 His Kinase A (phospho-acceptor) domain CTI08_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_01515 PF00072 Response regulator receiver domain CTI08_01515 PF00486 Transcriptional regulatory protein, C terminal CTI08_01520 PF09371 Tex-like protein N-terminal domain CTI08_01520 PF16921 Tex protein YqgF-like domain CTI08_01520 PF17674 HHH domain CTI08_01520 PF00575 S1 RNA binding domain CTI08_01540 PF00106 short chain dehydrogenase CTI08_01545 PF01053 Cys/Met metabolism PLP-dependent enzyme CTI08_01550 PF00005 ABC transporter CTI08_01550 PF12848 ABC transporter CTI08_01575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_01575 PF00529 HlyD membrane-fusion protein of T1SS CTI08_01580 PF00873 AcrB/AcrD/AcrF family CTI08_01585 PF01545 Cation efflux family CTI08_01615 PF00324 Amino acid permease CTI08_01630 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTI08_01645 PF01795 MraW methylase family CTI08_01655 PF00905 Penicillin binding protein transpeptidase domain CTI08_01655 PF03717 Penicillin-binding Protein dimerisation domain CTI08_01660 PF02875 Mur ligase family, glutamate ligase domain CTI08_01660 PF01225 Mur ligase family, catalytic domain CTI08_01660 PF08245 Mur ligase middle domain CTI08_01665 PF01225 Mur ligase family, catalytic domain CTI08_01665 PF02875 Mur ligase family, glutamate ligase domain CTI08_01665 PF08245 Mur ligase middle domain CTI08_01670 PF00953 Glycosyl transferase family 4 CTI08_01680 PF13847 Methyltransferase domain CTI08_01685 PF00912 Transglycosylase CTI08_01685 PF00905 Penicillin binding protein transpeptidase domain CTI08_01685 PF17092 Penicillin-binding protein OB-like domain CTI08_01710 PF11741 AMIN domain CTI08_01710 PF00263 Bacterial type II and III secretion system protein CTI08_01710 PF03958 Bacterial type II/III secretion system short domain CTI08_01710 PF07660 Secretin and TonB N terminus short domain CTI08_01715 PF01202 Shikimate kinase CTI08_01720 PF01761 3-dehydroquinate synthase CTI08_01730 PF01645 Conserved region in glutamate synthase CTI08_01730 PF00310 Glutamine amidotransferases class-II CTI08_01730 PF04898 Glutamate synthase central domain CTI08_01730 PF01493 GXGXG motif CTI08_01735 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CTI08_01735 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_01745 PF04011 LemA family CTI08_01750 PF04536 TPM domain CTI08_01760 PF00114 Pilin (bacterial filament) CTI08_01760 PF07963 Prokaryotic N-terminal methylation motif CTI08_01770 PF15864 Protein glycosylation ligase CTI08_01770 PF11846 Virulence factor membrane-bound polymerase, C-terminal CTI08_01770 PF04932 O-Antigen ligase CTI08_01775 PF00210 Ferritin-like domain CTI08_01780 PF04324 BFD-like [2Fe-2S] binding domain CTI08_01785 PF01042 Endoribonuclease L-PSP CTI08_01790 PF04607 Region found in RelA / SpoT proteins CTI08_01790 PF13291 ACT domain CTI08_01790 PF02824 TGS domain CTI08_01795 PF01192 RNA polymerase Rpb6 CTI08_01800 PF00625 Guanylate kinase CTI08_01805 PF02401 LytB protein CTI08_01845 PF00886 Ribosomal protein S16 CTI08_01850 PF05239 PRC-barrel domain CTI08_01850 PF01782 RimM N-terminal domain CTI08_01855 PF01746 tRNA (Guanine-1)-methyltransferase CTI08_01860 PF01245 Ribosomal protein L19 CTI08_01865 PF00561 alpha/beta hydrolase fold CTI08_01870 PF03280 Proteobacterial lipase chaperone protein CTI08_01875 PF01509 TruB family pseudouridylate synthase (N terminal domain) CTI08_01875 PF16198 tRNA pseudouridylate synthase B C-terminal domain CTI08_01875 PF09157 Pseudouridine synthase II TruB, C-terminal CTI08_01880 PF01925 Sulfite exporter TauE/SafE CTI08_01890 PF00892 EamA-like transporter family CTI08_01895 PF00892 EamA-like transporter family CTI08_01900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTI08_01900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTI08_01905 PF02913 FAD linked oxidases, C-terminal domain CTI08_01905 PF01565 FAD binding domain CTI08_01915 PF03992 Antibiotic biosynthesis monooxygenase CTI08_01920 PF02525 Flavodoxin-like fold CTI08_01930 PF07690 Major Facilitator Superfamily CTI08_01935 PF12805 FUSC-like inner membrane protein yccS CTI08_01940 PF00080 Copper/zinc superoxide dismutase (SODC) CTI08_01945 PF01594 AI-2E family transporter CTI08_01950 PF13614 AAA domain CTI08_01980 PF00324 Amino acid permease CTI08_01985 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CTI08_01985 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CTI08_01990 PF00202 Aminotransferase class-III CTI08_01995 PF04958 Arginine N-succinyltransferase beta subunit CTI08_02000 PF00171 Aldehyde dehydrogenase family CTI08_02005 PF04996 Succinylarginine dihydrolase CTI08_02010 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CTI08_02040 PF03466 LysR substrate binding domain CTI08_02040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_02045 PF00892 EamA-like transporter family CTI08_02055 PF02092 Glycyl-tRNA synthetase beta subunit CTI08_02055 PF05746 DALR anticodon binding domain CTI08_02060 PF02091 Glycyl-tRNA synthetase alpha subunit CTI08_02085 PF00571 CBS domain CTI08_02090 PF04024 PspC domain CTI08_02100 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTI08_02100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_02100 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_02100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_02110 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CTI08_02110 PF01488 Shikimate / quinate 5-dehydrogenase CTI08_02110 PF08501 Shikimate dehydrogenase substrate binding domain CTI08_02115 PF01218 Coproporphyrinogen III oxidase CTI08_02120 PF00925 GTP cyclohydrolase II CTI08_02125 PF02780 Transketolase, C-terminal domain CTI08_02125 PF02779 Transketolase, pyrimidine binding domain CTI08_02125 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CTI08_02130 PF00459 Inositol monophosphatase family CTI08_02135 PF00271 Helicase conserved C-terminal domain CTI08_02135 PF12343 Cold shock protein DEAD box A CTI08_02135 PF00270 DEAD/DEAH box helicase CTI08_02135 PF03880 DbpA RNA binding domain CTI08_02140 PF00005 ABC transporter CTI08_02145 PF02405 Permease MlaE CTI08_02155 PF05494 MlaC protein CTI08_02165 PF01544 CorA-like Mg2+ transporter protein CTI08_02170 PF03641 Possible lysine decarboxylase CTI08_02175 PF00293 NUDIX domain CTI08_02180 PF00156 Phosphoribosyl transferase domain CTI08_02185 PF17191 RecG wedge domain CTI08_02185 PF00270 DEAD/DEAH box helicase CTI08_02185 PF00271 Helicase conserved C-terminal domain CTI08_02200 PF01553 Acyltransferase CTI08_02210 PF00375 Sodium:dicarboxylate symporter family CTI08_02220 PF01926 50S ribosome-binding GTPase CTI08_02225 PF02082 Transcriptional regulator CTI08_02230 PF00175 Oxidoreductase NAD-binding domain CTI08_02230 PF00970 Oxidoreductase FAD-binding domain CTI08_02230 PF00042 Globin CTI08_02235 PF05872 Bacterial protein of unknown function (DUF853) CTI08_02240 PF01053 Cys/Met metabolism PLP-dependent enzyme CTI08_02245 PF00117 Glutamine amidotransferase class-I CTI08_02250 PF00338 Ribosomal protein S10p/S20e CTI08_02255 PF00297 Ribosomal protein L3 CTI08_02260 PF00573 Ribosomal protein L4/L1 family CTI08_02265 PF00276 Ribosomal protein L23 CTI08_02270 PF03947 Ribosomal Proteins L2, C-terminal domain CTI08_02270 PF00181 Ribosomal Proteins L2, RNA binding domain CTI08_02275 PF00203 Ribosomal protein S19 CTI08_02280 PF00237 Ribosomal protein L22p/L17e CTI08_02285 PF07650 KH domain CTI08_02285 PF00189 Ribosomal protein S3, C-terminal domain CTI08_02290 PF00252 Ribosomal protein L16p/L10e CTI08_02295 PF00831 Ribosomal L29 protein CTI08_02300 PF00366 Ribosomal protein S17 CTI08_02305 PF00238 Ribosomal protein L14p/L23e CTI08_02310 PF00467 KOW motif CTI08_02310 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CTI08_02315 PF00673 ribosomal L5P family C-terminus CTI08_02315 PF00281 Ribosomal protein L5 CTI08_02320 PF00253 Ribosomal protein S14p/S29e CTI08_02325 PF00410 Ribosomal protein S8 CTI08_02330 PF00347 Ribosomal protein L6 CTI08_02335 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CTI08_02340 PF00333 Ribosomal protein S5, N-terminal domain CTI08_02340 PF03719 Ribosomal protein S5, C-terminal domain CTI08_02345 PF00327 Ribosomal protein L30p/L7e CTI08_02350 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CTI08_02355 PF00344 SecY translocase CTI08_02360 PF00444 Ribosomal protein L36 CTI08_02365 PF00416 Ribosomal protein S13/S18 CTI08_02370 PF00411 Ribosomal protein S11 CTI08_02375 PF01479 S4 domain CTI08_02375 PF00163 Ribosomal protein S4/S9 N-terminal domain CTI08_02380 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CTI08_02380 PF01000 RNA polymerase Rpb3/RpoA insert domain CTI08_02380 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CTI08_02385 PF01196 Ribosomal protein L17 CTI08_02390 PF00743 Flavin-binding monooxygenase-like CTI08_02395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_02395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_02395 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_02400 PF03937 Flavinator of succinate dehydrogenase CTI08_02430 PF09526 Probable metal-binding protein (DUF2387) CTI08_02435 PF01432 Peptidase family M3 CTI08_02440 PF08206 Ribonuclease B OB domain CTI08_02440 PF00773 RNB domain CTI08_02440 PF08461 Ribonuclease R winged-helix domain CTI08_02440 PF00575 S1 RNA binding domain CTI08_02440 PF17876 Cold shock domain CTI08_02485 PF01557 Fumarylacetoacetate (FAA) hydrolase family CTI08_02490 PF12833 Helix-turn-helix domain CTI08_02495 PF00892 EamA-like transporter family CTI08_02500 PF03631 Virulence factor BrkB CTI08_02505 PF03358 NADPH-dependent FMN reductase CTI08_02530 PF02130 Uncharacterized protein family UPF0054 CTI08_02535 PF02562 PhoH-like protein CTI08_02540 PF01938 TRAM domain CTI08_02540 PF00919 Uncharacterized protein family UPF0004 CTI08_02540 PF04055 Radical SAM superfamily CTI08_02545 PF01464 Transglycosylase SLT domain CTI08_02545 PF10145 Phage-related minor tail protein CTI08_02545 PF01551 Peptidase family M23 CTI08_02555 PF00056 lactate/malate dehydrogenase, NAD binding domain CTI08_02555 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CTI08_02575 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CTI08_02580 PF01066 CDP-alcohol phosphatidyltransferase CTI08_02625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_02625 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_02625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_02630 PF17932 Tetracyclin repressor-like, C-terminal domain CTI08_02630 PF00440 Bacterial regulatory proteins, tetR family CTI08_02645 PF01039 Carboxyl transferase domain CTI08_02650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_02650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_02650 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_02660 PF02785 Biotin carboxylase C-terminal domain CTI08_02660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTI08_02660 PF00364 Biotin-requiring enzyme CTI08_02660 PF00289 Biotin carboxylase, N-terminal domain CTI08_02670 PF04386 Stringent starvation protein B CTI08_02675 PF13417 Glutathione S-transferase, N-terminal domain CTI08_02675 PF00043 Glutathione S-transferase, C-terminal domain CTI08_02680 PF00380 Ribosomal protein S9/S16 CTI08_02685 PF00572 Ribosomal protein L13 CTI08_02690 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CTI08_02695 PF00398 Ribosomal RNA adenine dimethylase CTI08_02700 PF00149 Calcineurin-like phosphoesterase CTI08_02720 PF01926 50S ribosome-binding GTPase CTI08_02720 PF16360 GTP-binding GTPase Middle Region CTI08_02720 PF13167 GTP-binding GTPase N-terminal CTI08_02730 PF13091 PLD-like domain CTI08_02735 PF10518 TAT (twin-arginine translocation) pathway signal sequence CTI08_02735 PF00149 Calcineurin-like phosphoesterase CTI08_02740 PF00691 OmpA family CTI08_02740 PF01389 OmpA-like transmembrane domain CTI08_02745 PF17152 Periplasmic sensor domain CTI08_02745 PF00990 Diguanylate cyclase, GGDEF domain CTI08_02790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_02790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTI08_02800 PF04273 Putative phosphatase (DUF442) CTI08_02800 PF00753 Metallo-beta-lactamase superfamily CTI08_02805 PF00561 alpha/beta hydrolase fold CTI08_02810 PF00085 Thioredoxin CTI08_02815 PF03061 Thioesterase superfamily CTI08_02825 PF04461 Protein of unknown function (DUF520) CTI08_02835 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CTI08_02835 PF01266 FAD dependent oxidoreductase CTI08_02845 PF03795 YCII-related domain CTI08_02850 PF04279 Intracellular septation protein A CTI08_02855 PF02811 PHP domain CTI08_02860 PF01062 Bestrophin, RFP-TM, chloride channel CTI08_02865 PF04002 RadC-like JAB domain CTI08_02870 PF04127 DNA / pantothenate metabolism flavoprotein CTI08_02870 PF02441 Flavoprotein CTI08_02875 PF02355 Protein export membrane protein CTI08_02875 PF07549 SecD/SecF GG Motif CTI08_02880 PF13721 SecD export protein N-terminal TM region CTI08_02880 PF07549 SecD/SecF GG Motif CTI08_02880 PF02355 Protein export membrane protein CTI08_02885 PF02699 Preprotein translocase subunit CTI08_02890 PF01702 Queuine tRNA-ribosyltransferase CTI08_02905 PF02547 Queuosine biosynthesis protein CTI08_02935 PF07689 KaiB domain CTI08_02935 PF00512 His Kinase A (phospho-acceptor) domain CTI08_02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_02940 PF08335 GlnD PII-uridylyltransferase CTI08_02940 PF03710 Glutamate-ammonia ligase adenylyltransferase CTI08_02945 PF01063 Amino-transferase class IV CTI08_02960 PF01522 Polysaccharide deacetylase CTI08_02965 PF00535 Glycosyl transferase family 2 CTI08_02970 PF13439 Glycosyltransferase Family 4 CTI08_02970 PF00534 Glycosyl transferases group 1 CTI08_02995 PF17102 Stealth protein CR3, conserved region 3 CTI08_02995 PF17101 Stealth protein CR1, conserved region 1 CTI08_02995 PF11380 Stealth protein CR2, conserved region 2 CTI08_03000 PF01336 OB-fold nucleic acid binding domain CTI08_03000 PF00152 tRNA synthetases class II (D, K and N) CTI08_03000 PF02938 GAD domain CTI08_03010 PF00593 TonB dependent receptor CTI08_03010 PF07715 TonB-dependent Receptor Plug Domain CTI08_03030 PF06146 Phosphate-starvation-inducible E CTI08_03035 PF02798 Glutathione S-transferase, N-terminal domain CTI08_03035 PF00043 Glutathione S-transferase, C-terminal domain CTI08_03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_03040 PF03466 LysR substrate binding domain CTI08_03045 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTI08_03045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_03045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_03045 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_03050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_03050 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTI08_03050 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_03050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_03060 PF00512 His Kinase A (phospho-acceptor) domain CTI08_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_03060 PF00672 HAMP domain CTI08_03065 PF00486 Transcriptional regulatory protein, C terminal CTI08_03065 PF00072 Response regulator receiver domain CTI08_03070 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CTI08_03090 PF01923 Cobalamin adenosyltransferase CTI08_03095 PF00593 TonB dependent receptor CTI08_03095 PF07715 TonB-dependent Receptor Plug Domain CTI08_03100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CTI08_03105 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_03130 PF00290 Tryptophan synthase alpha chain CTI08_03135 PF01039 Carboxyl transferase domain CTI08_03140 PF08245 Mur ligase middle domain CTI08_03140 PF02875 Mur ligase family, glutamate ligase domain CTI08_03155 PF00753 Metallo-beta-lactamase superfamily CTI08_03160 PF10417 C-terminal domain of 1-Cys peroxiredoxin CTI08_03160 PF00578 AhpC/TSA family CTI08_03165 PF01043 SecA preprotein cross-linking domain CTI08_03165 PF07516 SecA Wing and Scaffold domain CTI08_03165 PF02810 SEC-C motif CTI08_03165 PF07517 SecA DEAD-like domain CTI08_03175 PF00083 Sugar (and other) transporter CTI08_03175 PF07690 Major Facilitator Superfamily CTI08_03180 PF03006 Haemolysin-III related CTI08_03205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTI08_03205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTI08_03205 PF00378 Enoyl-CoA hydratase/isomerase CTI08_03210 PF00108 Thiolase, N-terminal domain CTI08_03210 PF02803 Thiolase, C-terminal domain CTI08_03215 PF02311 AraC-like ligand binding domain CTI08_03215 PF12833 Helix-turn-helix domain CTI08_03220 PF02515 CoA-transferase family III CTI08_03225 PF04966 Carbohydrate-selective porin, OprB family CTI08_03230 PF01011 PQQ enzyme repeat CTI08_03235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTI08_03235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTI08_03245 PF00893 Small Multidrug Resistance protein CTI08_03255 PF00108 Thiolase, N-terminal domain CTI08_03255 PF02803 Thiolase, C-terminal domain CTI08_03265 PF13505 Outer membrane protein beta-barrel domain CTI08_03265 PF00691 OmpA family CTI08_03275 PF01139 tRNA-splicing ligase RtcB CTI08_03280 PF00324 Amino acid permease CTI08_03285 PF05175 Methyltransferase small domain CTI08_03285 PF08468 Methyltransferase small domain N-terminal CTI08_03290 PF00860 Permease family CTI08_03300 PF01741 Large-conductance mechanosensitive channel, MscL CTI08_03315 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CTI08_03315 PF06827 Zinc finger found in FPG and IleRS CTI08_03315 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CTI08_03320 PF02245 Methylpurine-DNA glycosylase (MPG) CTI08_03325 PF07715 TonB-dependent Receptor Plug Domain CTI08_03325 PF00593 TonB dependent receptor CTI08_03330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTI08_03335 PF03547 Membrane transport protein CTI08_03345 PF13098 Thioredoxin-like domain CTI08_03345 PF10411 Disulfide bond isomerase protein N-terminus CTI08_03350 PF01571 Aminomethyltransferase folate-binding domain CTI08_03360 PF04343 Protein of unknown function, DUF488 CTI08_03365 PF03831 PhnA domain CTI08_03365 PF08274 PhnA Zinc-Ribbon CTI08_03370 PF07411 Domain of unknown function (DUF1508) CTI08_03375 PF04073 Aminoacyl-tRNA editing domain CTI08_03375 PF03129 Anticodon binding domain CTI08_03375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTI08_03380 PF00873 AcrB/AcrD/AcrF family CTI08_03400 PF00072 Response regulator receiver domain CTI08_03405 PF00072 Response regulator receiver domain CTI08_03410 PF01584 CheW-like domain CTI08_03415 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CTI08_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CTI08_03420 PF01627 Hpt domain CTI08_03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_03420 PF00072 Response regulator receiver domain CTI08_03420 PF01584 CheW-like domain CTI08_03430 PF07687 Peptidase dimerisation domain CTI08_03430 PF01546 Peptidase family M20/M25/M40 CTI08_03435 PF08085 Entericidin EcnA/B family CTI08_03445 PF04304 Protein of unknown function (DUF454) CTI08_03450 PF03734 L,D-transpeptidase catalytic domain CTI08_03450 PF17969 L,D-transpeptidase C-terminal domain CTI08_03490 PF00175 Oxidoreductase NAD-binding domain CTI08_03490 PF00258 Flavodoxin CTI08_03490 PF00667 FAD binding domain CTI08_03500 PF12805 FUSC-like inner membrane protein yccS CTI08_03505 PF07690 Major Facilitator Superfamily CTI08_03510 PF00881 Nitroreductase family CTI08_03525 PF01235 Sodium:alanine symporter family CTI08_03530 PF01734 Patatin-like phospholipase CTI08_03535 PF13291 ACT domain CTI08_03535 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_03540 PF05992 SbmA/BacA-like family CTI08_03570 PF02934 GatB/GatE catalytic domain CTI08_03570 PF02637 GatB domain CTI08_03575 PF01425 Amidase CTI08_03580 PF02686 Glu-tRNAGln amidotransferase C subunit CTI08_03590 PF04085 rod shape-determining protein MreC CTI08_03595 PF04093 rod shape-determining protein MreD CTI08_03600 PF02545 Maf-like protein CTI08_03605 PF10150 Ribonuclease E/G family CTI08_03605 PF00575 S1 RNA binding domain CTI08_03615 PF06974 Protein of unknown function (DUF1298) CTI08_03615 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CTI08_03620 PF01507 Phosphoadenosine phosphosulfate reductase family CTI08_03635 PF02525 Flavodoxin-like fold CTI08_03655 PF02673 Bacitracin resistance protein BacA CTI08_03660 PF06719 AraC-type transcriptional regulator N-terminus CTI08_03660 PF12833 Helix-turn-helix domain CTI08_03665 PF09277 Erythronolide synthase, docking CTI08_03665 PF16197 Ketoacyl-synthetase C-terminal extension CTI08_03665 PF08990 Erythronolide synthase docking CTI08_03665 PF00550 Phosphopantetheine attachment site CTI08_03665 PF08659 KR domain CTI08_03665 PF14765 Polyketide synthase dehydratase CTI08_03665 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_03665 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_03665 PF00698 Acyl transferase domain CTI08_03665 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_03670 PF01965 DJ-1/PfpI family CTI08_03680 PF00324 Amino acid permease CTI08_03685 PF04303 PrpF protein CTI08_03690 PF00348 Polyprenyl synthetase CTI08_03695 PF04237 YjbR CTI08_03700 PF01145 SPFH domain / Band 7 family CTI08_03710 PF01734 Patatin-like phospholipase CTI08_03730 PF00884 Sulfatase CTI08_03730 PF08019 Phosphoethanolamine transferase EptA/EptB CTI08_03735 PF00486 Transcriptional regulatory protein, C terminal CTI08_03735 PF00072 Response regulator receiver domain CTI08_03740 PF08521 Two-component sensor kinase N-terminal CTI08_03740 PF00512 His Kinase A (phospho-acceptor) domain CTI08_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_03750 PF00909 Ammonium Transporter Family CTI08_03780 PF10458 Valyl tRNA synthetase tRNA binding arm CTI08_03780 PF00133 tRNA synthetases class I (I, L, M and V) CTI08_03780 PF08264 Anticodon-binding domain of tRNA CTI08_03800 PF01906 Putative heavy-metal-binding CTI08_03805 PF01906 Putative heavy-metal-binding CTI08_03810 PF02321 Outer membrane efflux protein CTI08_03815 PF00873 AcrB/AcrD/AcrF family CTI08_03820 PF00529 HlyD membrane-fusion protein of T1SS CTI08_03820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_03825 PF01569 PAP2 superfamily CTI08_03835 PF00348 Polyprenyl synthetase CTI08_03845 PF00829 Ribosomal prokaryotic L21 protein CTI08_03850 PF01016 Ribosomal L27 protein CTI08_03855 PF03548 Outer membrane lipoprotein carrier protein LolA CTI08_03865 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTI08_03865 PF02403 Seryl-tRNA synthetase N-terminal domain CTI08_03870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTI08_03870 PF14824 Sirohaem biosynthesis protein central CTI08_03870 PF10414 Sirohaem synthase dimerisation region CTI08_03875 PF00588 SpoU rRNA Methylase family CTI08_03880 PF01638 HxlR-like helix-turn-helix CTI08_03885 PF03358 NADPH-dependent FMN reductase CTI08_03890 PF13520 Amino acid permease CTI08_03895 PF00465 Iron-containing alcohol dehydrogenase CTI08_03905 PF03099 Biotin/lipoate A/B protein ligase family CTI08_03910 PF04359 Protein of unknown function (DUF493) CTI08_03915 PF03979 Sigma-70 factor, region 1.1 CTI08_03915 PF04545 Sigma-70, region 4 CTI08_03915 PF00140 Sigma-70 factor, region 1.2 CTI08_03915 PF04546 Sigma-70, non-essential region CTI08_03915 PF04539 Sigma-70 region 3 CTI08_03915 PF04542 Sigma-70 region 2 CTI08_03945 PF00285 Citrate synthase, C-terminal domain CTI08_03950 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CTI08_03955 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CTI08_03960 PF00890 FAD binding domain CTI08_03960 PF02910 Fumarate reductase flavoprotein C-term CTI08_03965 PF13085 2Fe-2S iron-sulfur cluster binding domain CTI08_03980 PF02779 Transketolase, pyrimidine binding domain CTI08_03980 PF16870 2-oxoglutarate dehydrogenase C-terminal CTI08_03980 PF00676 Dehydrogenase E1 component CTI08_03980 PF16078 2-oxoglutarate dehydrogenase N-terminus CTI08_03985 PF02817 e3 binding domain CTI08_03985 PF00364 Biotin-requiring enzyme CTI08_03985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTI08_03990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_03990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTI08_03995 PF00549 CoA-ligase CTI08_03995 PF08442 ATP-grasp domain CTI08_04000 PF02629 CoA binding domain CTI08_04000 PF00549 CoA-ligase CTI08_04005 PF00579 tRNA synthetases class I (W and Y) CTI08_04010 PF05661 Protein of unknown function (DUF808) CTI08_04015 PF04228 Putative neutral zinc metallopeptidase CTI08_04020 PF00999 Sodium/hydrogen exchanger family CTI08_04035 PF09587 Bacterial capsule synthesis protein PGA_cap CTI08_04045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTI08_04050 PF00582 Universal stress protein family CTI08_04055 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_04060 PF03449 Transcription elongation factor, N-terminal CTI08_04060 PF01272 Transcription elongation factor, GreA/GreB, C-term CTI08_04065 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CTI08_04065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTI08_04065 PF02142 MGS-like domain CTI08_04070 PF00117 Glutamine amidotransferase class-I CTI08_04070 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CTI08_04090 PF01985 CRS1 / YhbY (CRM) domain CTI08_04095 PF01728 FtsJ-like methyltransferase CTI08_04100 PF06480 FtsH Extracellular CTI08_04100 PF17862 AAA+ lid domain CTI08_04100 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_04100 PF01434 Peptidase family M41 CTI08_04125 PF16655 PhoD-like phosphatase, N-terminal domain CTI08_04125 PF09423 PhoD-like phosphatase CTI08_04140 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CTI08_04140 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CTI08_04155 PF00083 Sugar (and other) transporter CTI08_04160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CTI08_04160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CTI08_04165 PF01266 FAD dependent oxidoreductase CTI08_04165 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CTI08_04170 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CTI08_04170 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CTI08_04175 PF00781 Diacylglycerol kinase catalytic domain CTI08_04180 PF00149 Calcineurin-like phosphoesterase CTI08_04190 PF00166 Chaperonin 10 Kd subunit CTI08_04195 PF00118 TCP-1/cpn60 chaperonin family CTI08_04200 PF01219 Prokaryotic diacylglycerol kinase CTI08_04205 PF00753 Metallo-beta-lactamase superfamily CTI08_04210 PF03009 Glycerophosphoryl diester phosphodiesterase family CTI08_04215 PF00873 AcrB/AcrD/AcrF family CTI08_04225 PF01435 Peptidase family M48 CTI08_04230 PF01464 Transglycosylase SLT domain CTI08_04240 PF01171 PP-loop family CTI08_04250 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTI08_04250 PF01464 Transglycosylase SLT domain CTI08_04255 PF03449 Transcription elongation factor, N-terminal CTI08_04255 PF01272 Transcription elongation factor, GreA/GreB, C-term CTI08_04270 PF00668 Condensation domain CTI08_04270 PF13193 AMP-binding enzyme C-terminal domain CTI08_04270 PF00501 AMP-binding enzyme CTI08_04270 PF00550 Phosphopantetheine attachment site CTI08_04270 PF00975 Thioesterase domain CTI08_04295 PF00881 Nitroreductase family CTI08_04310 PF02595 Glycerate kinase family CTI08_04315 PF00384 Molybdopterin oxidoreductase CTI08_04320 PF02634 FdhD/NarQ family CTI08_04325 PF06803 Protein of unknown function (DUF1232) CTI08_04330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTI08_04330 PF11890 Domain of unknown function (DUF3410) CTI08_04330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTI08_04335 PF00152 tRNA synthetases class II (D, K and N) CTI08_04345 PF18073 Rubredoxin metal binding domain CTI08_04350 PF00324 Amino acid permease CTI08_04360 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CTI08_04360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CTI08_04365 PF01678 Diaminopimelate epimerase CTI08_04370 PF01810 LysE type translocator CTI08_04375 PF02899 Phage integrase, N-terminal SAM-like domain CTI08_04375 PF00589 Phage integrase family CTI08_04380 PF01012 Electron transfer flavoprotein domain CTI08_04385 PF00766 Electron transfer flavoprotein FAD-binding domain CTI08_04385 PF01012 Electron transfer flavoprotein domain CTI08_04390 PF00521 DNA gyrase/topoisomerase IV, subunit A CTI08_04390 PF03989 DNA gyrase C-terminal domain, beta-propeller CTI08_04405 PF00535 Glycosyl transferase family 2 CTI08_04425 PF13533 Biotin-lipoyl like CTI08_04435 PF00266 Aminotransferase class-V CTI08_04445 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CTI08_04455 PF02687 FtsX-like permease family CTI08_04455 PF12704 MacB-like periplasmic core domain CTI08_04460 PF00005 ABC transporter CTI08_04465 PF03772 Competence protein CTI08_04465 PF13567 Domain of unknown function (DUF4131) CTI08_04465 PF00753 Metallo-beta-lactamase superfamily CTI08_04475 PF01343 Peptidase family S49 CTI08_04475 PF06965 Na+/H+ antiporter 1 CTI08_04480 PF12697 Alpha/beta hydrolase family CTI08_04485 PF00551 Formyl transferase CTI08_04490 PF02769 AIR synthase related protein, C-terminal domain CTI08_04490 PF00586 AIR synthase related protein, N-terminal domain CTI08_04495 PF01594 AI-2E family transporter CTI08_04500 PF00308 Bacterial dnaA protein CTI08_04500 PF08299 Bacterial dnaA protein helix-turn-helix CTI08_04500 PF11638 DnaA N-terminal domain CTI08_04530 PF00588 SpoU rRNA Methylase family CTI08_04530 PF08032 RNA 2'-O ribose methyltransferase substrate binding CTI08_04535 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CTI08_04545 PF00691 OmpA family CTI08_04550 PF07676 WD40-like Beta Propeller Repeat CTI08_04550 PF04052 TolB amino-terminal domain CTI08_04560 PF02472 Biopolymer transport protein ExbD/TolR CTI08_04565 PF01618 MotA/TolQ/ExbB proton channel family CTI08_04570 PF03061 Thioesterase superfamily CTI08_04575 PF07687 Peptidase dimerisation domain CTI08_04575 PF01546 Peptidase family M20/M25/M40 CTI08_04580 PF17864 RuvB AAA lid domain CTI08_04580 PF05496 Holliday junction DNA helicase RuvB P-loop domain CTI08_04580 PF05491 RuvB C-terminal winged helix domain CTI08_04585 PF01330 RuvA N terminal domain CTI08_04585 PF07499 RuvA, C-terminal domain CTI08_04590 PF01966 HD domain CTI08_04595 PF02769 AIR synthase related protein, C-terminal domain CTI08_04595 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CTI08_04595 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CTI08_04600 PF07690 Major Facilitator Superfamily CTI08_04605 PF01784 NIF3 (NGG1p interacting factor 3) CTI08_04610 PF00378 Enoyl-CoA hydratase/isomerase CTI08_04615 PF00293 NUDIX domain CTI08_04615 PF01467 Cytidylyltransferase-like CTI08_04625 PF00578 AhpC/TSA family CTI08_04640 PF06508 Queuosine biosynthesis protein QueC CTI08_04650 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_04650 PF14602 Hexapeptide repeat of succinyl-transferase CTI08_04650 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CTI08_04660 PF03466 LysR substrate binding domain CTI08_04660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_04665 PF00005 ABC transporter CTI08_04665 PF12857 TOBE-like domain CTI08_04670 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_04675 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_04690 PF01063 Amino-transferase class IV CTI08_04695 PF02618 YceG-like family CTI08_04700 PF02223 Thymidylate kinase CTI08_04710 PF00890 FAD binding domain CTI08_04710 PF02910 Fumarate reductase flavoprotein C-term CTI08_04715 PF13180 PDZ domain CTI08_04725 PF00679 Elongation factor G C-terminus CTI08_04725 PF00009 Elongation factor Tu GTP binding domain CTI08_04725 PF03144 Elongation factor Tu domain 2 CTI08_04725 PF06421 GTP-binding protein LepA C-terminus CTI08_04730 PF10502 Signal peptidase, peptidase S26 CTI08_04740 PF00035 Double-stranded RNA binding motif CTI08_04740 PF14622 Ribonuclease-III-like CTI08_04745 PF01926 50S ribosome-binding GTPase CTI08_04745 PF07650 KH domain CTI08_04755 PF11967 Recombination protein O N terminal CTI08_04755 PF02565 Recombination protein O C terminal CTI08_04760 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CTI08_04765 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CTI08_04770 PF00106 short chain dehydrogenase CTI08_04810 PF00990 Diguanylate cyclase, GGDEF domain CTI08_04810 PF17151 Periplasmic sensor domain CTI08_04820 PF02151 UvrB/uvrC motif CTI08_04820 PF04851 Type III restriction enzyme, res subunit CTI08_04820 PF00271 Helicase conserved C-terminal domain CTI08_04820 PF17757 UvrB interaction domain CTI08_04820 PF12344 Ultra-violet resistance protein B CTI08_04830 PF00892 EamA-like transporter family CTI08_04835 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTI08_04835 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTI08_04850 PF01926 50S ribosome-binding GTPase CTI08_04850 PF01018 GTP1/OBG CTI08_04855 PF00696 Amino acid kinase family CTI08_04855 PF01472 PUA domain CTI08_04865 PF07759 Protein of unknown function (DUF1615) CTI08_04870 PF01207 Dihydrouridine synthase (Dus) CTI08_04875 PF03060 Nitronate monooxygenase CTI08_04890 PF02350 UDP-N-acetylglucosamine 2-epimerase CTI08_04920 PF00875 DNA photolyase CTI08_04920 PF03441 FAD binding domain of DNA photolyase CTI08_04925 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTI08_04930 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_04935 PF07943 Penicillin-binding protein 5, C-terminal domain CTI08_04935 PF00768 D-alanyl-D-alanine carboxypeptidase CTI08_04945 PF03971 Monomeric isocitrate dehydrogenase CTI08_04950 PF00849 RNA pseudouridylate synthase CTI08_04955 PF00180 Isocitrate/isopropylmalate dehydrogenase CTI08_04975 PF06779 Uncharacterised MFS-type transporter YbfB CTI08_04980 PF03466 LysR substrate binding domain CTI08_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_04990 PF02567 Phenazine biosynthesis-like protein CTI08_04995 PF05193 Peptidase M16 inactive domain CTI08_04995 PF00675 Insulinase (Peptidase family M16) CTI08_05020 PF02581 Thiamine monophosphate synthase CTI08_05025 PF00202 Aminotransferase class-III CTI08_05035 PF00849 RNA pseudouridylate synthase CTI08_05040 PF18339 RapA N-terminal Tudor like domain 1 CTI08_05040 PF00176 SNF2 family N-terminal domain CTI08_05040 PF12137 RNA polymerase recycling family C-terminal CTI08_05040 PF00271 Helicase conserved C-terminal domain CTI08_05040 PF18337 RapA N-terminal Tudor like domain CTI08_05050 PF00440 Bacterial regulatory proteins, tetR family CTI08_05055 PF00970 Oxidoreductase FAD-binding domain CTI08_05055 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_05055 PF00175 Oxidoreductase NAD-binding domain CTI08_05060 PF00487 Fatty acid desaturase CTI08_05070 PF00440 Bacterial regulatory proteins, tetR family CTI08_05070 PF17754 MftR C-terminal domain CTI08_05080 PF00202 Aminotransferase class-III CTI08_05085 PF00282 Pyridoxal-dependent decarboxylase conserved domain CTI08_05090 PF00171 Aldehyde dehydrogenase family CTI08_05095 PF01037 Lrp/AsnC ligand binding domain CTI08_05100 PF00205 Thiamine pyrophosphate enzyme, central domain CTI08_05100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTI08_05100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTI08_05105 PF00324 Amino acid permease CTI08_05110 PF12849 PBP superfamily domain CTI08_05115 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_05120 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_05125 PF00005 ABC transporter CTI08_05130 PF08496 Peptidase family S49 N-terminal CTI08_05130 PF01343 Peptidase family S49 CTI08_05145 PF00206 Lyase CTI08_05145 PF08328 Adenylosuccinate lyase C-terminal CTI08_05150 PF04356 Protein of unknown function (DUF489) CTI08_05160 PF00293 NUDIX domain CTI08_05160 PF13344 Haloacid dehalogenase-like hydrolase CTI08_05165 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_05170 PF07943 Penicillin-binding protein 5, C-terminal domain CTI08_05170 PF00768 D-alanyl-D-alanine carboxypeptidase CTI08_05185 PF01975 Survival protein SurE CTI08_05190 PF01551 Peptidase family M23 CTI08_05190 PF01476 LysM domain CTI08_05195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_05195 PF03466 LysR substrate binding domain CTI08_05200 PF13654 AAA domain CTI08_05200 PF05362 Lon protease (S16) C-terminal proteolytic domain CTI08_05205 PF07690 Major Facilitator Superfamily CTI08_05210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTI08_05215 PF13593 SBF-like CPA transporter family (DUF4137) CTI08_05220 PF01197 Ribosomal protein L31 CTI08_05235 PF04055 Radical SAM superfamily CTI08_05240 PF08207 Elongation factor P (EF-P) KOW-like domain CTI08_05240 PF01132 Elongation factor P (EF-P) OB domain CTI08_05240 PF09285 Elongation factor P, C-terminal CTI08_05245 PF13722 5TM C-terminal transporter carbon starvation CstA CTI08_05245 PF02554 Carbon starvation protein CstA CTI08_05250 PF04328 Selenoprotein, putative CTI08_05285 PF13556 PucR C-terminal helix-turn-helix domain CTI08_05285 PF17853 GGDEF-like domain CTI08_05285 PF06018 CodY GAF-like domain CTI08_05300 PF00171 Aldehyde dehydrogenase family CTI08_05305 PF00324 Amino acid permease CTI08_05310 PF03466 LysR substrate binding domain CTI08_05310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_05315 PF02028 BCCT, betaine/carnitine/choline family transporter CTI08_05320 PF02028 BCCT, betaine/carnitine/choline family transporter CTI08_05325 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTI08_05325 PF00355 Rieske [2Fe-2S] domain CTI08_05335 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_05335 PF18113 Rubredoxin binding C-terminal domain CTI08_05340 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CTI08_05340 PF01266 FAD dependent oxidoreductase CTI08_05360 PF00892 EamA-like transporter family CTI08_05370 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CTI08_05375 PF00083 Sugar (and other) transporter CTI08_05380 PF13378 Enolase C-terminal domain-like CTI08_05380 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CTI08_05385 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_05385 PF00698 Acyl transferase domain CTI08_05385 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_05385 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_05385 PF14765 Polyketide synthase dehydratase CTI08_05385 PF00550 Phosphopantetheine attachment site CTI08_05385 PF09277 Erythronolide synthase, docking CTI08_05385 PF08990 Erythronolide synthase docking CTI08_05385 PF08659 KR domain CTI08_05385 PF16197 Ketoacyl-synthetase C-terminal extension CTI08_05390 PF00440 Bacterial regulatory proteins, tetR family CTI08_05410 PF02678 Pirin CTI08_05410 PF17954 Quercetinase C-terminal cupin domain CTI08_05420 PF08348 YheO-like PAS domain CTI08_05420 PF13309 HTH domain CTI08_05535 PF04233 Phage Mu protein F like protein CTI08_05540 PF06074 Protein of unknown function (DUF935) CTI08_05555 PF03237 Terminase-like family CTI08_05590 PF10502 Signal peptidase, peptidase S26 CTI08_05615 PF01471 Putative peptidoglycan binding domain CTI08_05615 PF13401 AAA domain CTI08_05645 PF00216 Bacterial DNA-binding protein CTI08_05690 PF00668 Condensation domain CTI08_05690 PF13193 AMP-binding enzyme C-terminal domain CTI08_05690 PF00550 Phosphopantetheine attachment site CTI08_05690 PF00501 AMP-binding enzyme CTI08_05695 PF00975 Thioesterase domain CTI08_05695 PF00501 AMP-binding enzyme CTI08_05695 PF00668 Condensation domain CTI08_05695 PF13193 AMP-binding enzyme C-terminal domain CTI08_05695 PF00550 Phosphopantetheine attachment site CTI08_05700 PF01032 FecCD transport family CTI08_05705 PF01032 FecCD transport family CTI08_05710 PF00005 ABC transporter CTI08_05715 PF01497 Periplasmic binding protein CTI08_05720 PF07715 TonB-dependent Receptor Plug Domain CTI08_05720 PF00593 TonB dependent receptor CTI08_05725 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CTI08_05730 PF00668 Condensation domain CTI08_05730 PF00501 AMP-binding enzyme CTI08_05730 PF00550 Phosphopantetheine attachment site CTI08_05735 PF00501 AMP-binding enzyme CTI08_05735 PF13193 AMP-binding enzyme C-terminal domain CTI08_05740 PF00857 Isochorismatase family CTI08_05740 PF00550 Phosphopantetheine attachment site CTI08_05745 PF00282 Pyridoxal-dependent decarboxylase conserved domain CTI08_05755 PF00005 ABC transporter CTI08_05755 PF00664 ABC transporter transmembrane region CTI08_05760 PF00664 ABC transporter transmembrane region CTI08_05760 PF00005 ABC transporter CTI08_05765 PF00975 Thioesterase domain CTI08_05775 PF00425 chorismate binding enzyme CTI08_05785 PF01208 Uroporphyrinogen decarboxylase (URO-D) CTI08_05790 PF05675 Protein of unknown function (DUF817) CTI08_05815 PF00144 Beta-lactamase CTI08_05830 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_05830 PF01799 [2Fe-2S] binding domain CTI08_05835 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CTI08_05835 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CTI08_05850 PF00218 Indole-3-glycerol phosphate synthase CTI08_05855 PF00591 Glycosyl transferase family, a/b domain CTI08_05855 PF02885 Glycosyl transferase family, helical bundle domain CTI08_05860 PF00593 TonB dependent receptor CTI08_05860 PF07715 TonB-dependent Receptor Plug Domain CTI08_05865 PF01433 Peptidase family M1 domain CTI08_05865 PF11838 ERAP1-like C-terminal domain CTI08_05870 PF00117 Glutamine amidotransferase class-I CTI08_06180 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CTI08_06190 PF01551 Peptidase family M23 CTI08_06190 PF10145 Phage-related minor tail protein CTI08_06190 PF01464 Transglycosylase SLT domain CTI08_06240 PF08019 Phosphoethanolamine transferase EptA/EptB CTI08_06240 PF00884 Sulfatase CTI08_06275 PF05195 Aminopeptidase P, N-terminal domain CTI08_06275 PF00557 Metallopeptidase family M24 CTI08_06280 PF01494 FAD binding domain CTI08_06285 PF01494 FAD binding domain CTI08_06295 PF13411 MerR HTH family regulatory protein CTI08_06305 PF01810 LysE type translocator CTI08_06310 PF03466 LysR substrate binding domain CTI08_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_06320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CTI08_06325 PF02021 Uncharacterised protein family UPF0102 CTI08_06330 PF04972 BON domain CTI08_06340 PF00293 NUDIX domain CTI08_06340 PF09297 NADH pyrophosphatase zinc ribbon domain CTI08_06350 PF00929 Exonuclease CTI08_06355 PF01464 Transglycosylase SLT domain CTI08_06355 PF01476 LysM domain CTI08_06355 PF01464 Transglycosylase SLT domain CTI08_06355 PF01476 LysM domain CTI08_06360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CTI08_06365 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_06370 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_06370 PF12911 N-terminal TM domain of oligopeptide transport permease C CTI08_06375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTI08_06375 PF00005 ABC transporter CTI08_06380 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_06380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTI08_06385 PF07715 TonB-dependent Receptor Plug Domain CTI08_06385 PF00593 TonB dependent receptor CTI08_06395 PF00929 Exonuclease CTI08_06400 PF01979 Amidohydrolase family CTI08_06405 PF01590 GAF domain CTI08_06405 PF00990 Diguanylate cyclase, GGDEF domain CTI08_06405 PF00360 Phytochrome region CTI08_06405 PF00563 EAL domain CTI08_06410 PF00764 Arginosuccinate synthase CTI08_06415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTI08_06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_06430 PF05987 Bacterial protein of unknown function (DUF898) CTI08_06435 PF03180 NLPA lipoprotein CTI08_06455 PF13610 DDE domain CTI08_06475 PF00583 Acetyltransferase (GNAT) family CTI08_06485 PF13610 DDE domain CTI08_06495 PF00106 short chain dehydrogenase CTI08_06505 PF17932 Tetracyclin repressor-like, C-terminal domain CTI08_06505 PF00440 Bacterial regulatory proteins, tetR family CTI08_06510 PF02678 Pirin CTI08_06510 PF17954 Quercetinase C-terminal cupin domain CTI08_06520 PF00106 short chain dehydrogenase CTI08_06525 PF00743 Flavin-binding monooxygenase-like CTI08_06535 PF00860 Permease family CTI08_06540 PF00962 Adenosine/AMP deaminase CTI08_06545 PF01292 Prokaryotic cytochrome b561 CTI08_06555 PF01351 Ribonuclease HII CTI08_06560 PF02599 Global regulator protein family CTI08_06565 PF13840 ACT domain CTI08_06565 PF01842 ACT domain CTI08_06565 PF00696 Amino acid kinase family CTI08_06620 PF01726 LexA DNA binding domain CTI08_06620 PF00717 Peptidase S24-like CTI08_06625 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT CTI08_06715 PF06381 Protein of unknown function (DUF1073) CTI08_06730 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) CTI08_06845 PF13438 Domain of unknown function (DUF4113) CTI08_06845 PF00817 impB/mucB/samB family CTI08_06845 PF11799 impB/mucB/samB family C-terminal domain CTI08_06850 PF00717 Peptidase S24-like CTI08_06905 PF00083 Sugar (and other) transporter CTI08_06910 PF00701 Dihydrodipicolinate synthetase family CTI08_06935 PF13520 Amino acid permease CTI08_06940 PF02574 Homocysteine S-methyltransferase CTI08_06950 PF06039 Malate:quinone oxidoreductase (Mqo) CTI08_06955 PF05199 GMC oxidoreductase CTI08_06955 PF00732 GMC oxidoreductase CTI08_06960 PF00171 Aldehyde dehydrogenase family CTI08_06965 PF00440 Bacterial regulatory proteins, tetR family CTI08_06965 PF13977 BetI-type transcriptional repressor, C-terminal CTI08_06970 PF02028 BCCT, betaine/carnitine/choline family transporter CTI08_06975 PF02028 BCCT, betaine/carnitine/choline family transporter CTI08_06985 PF03061 Thioesterase superfamily CTI08_06995 PF07683 Cobalamin synthesis protein cobW C-terminal domain CTI08_06995 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTI08_07000 PF00375 Sodium:dicarboxylate symporter family CTI08_07005 PF07152 YaeQ protein CTI08_07010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTI08_07015 PF01522 Polysaccharide deacetylase CTI08_07015 PF14883 Hypothetical glycosyl hydrolase family 13 CTI08_07020 PF00535 Glycosyl transferase family 2 CTI08_07030 PF00378 Enoyl-CoA hydratase/isomerase CTI08_07045 PF01614 Bacterial transcriptional regulator CTI08_07045 PF09339 IclR helix-turn-helix domain CTI08_07050 PF00355 Rieske [2Fe-2S] domain CTI08_07060 PF00355 Rieske [2Fe-2S] domain CTI08_07070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CTI08_07075 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_07075 PF14759 Reductase C-terminal CTI08_07080 PF07690 Major Facilitator Superfamily CTI08_07090 PF12697 Alpha/beta hydrolase family CTI08_07100 PF03447 Homoserine dehydrogenase, NAD binding domain CTI08_07100 PF01958 Domain of unknown function DUF108 CTI08_07105 PF00171 Aldehyde dehydrogenase family CTI08_07110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTI08_07110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTI08_07110 PF00205 Thiamine pyrophosphate enzyme, central domain CTI08_07120 PF07690 Major Facilitator Superfamily CTI08_07125 PF01327 Polypeptide deformylase CTI08_07130 PF04960 Glutaminase CTI08_07135 PF02311 AraC-like ligand binding domain CTI08_07135 PF12833 Helix-turn-helix domain CTI08_07140 PF07690 Major Facilitator Superfamily CTI08_07145 PF01263 Aldose 1-epimerase CTI08_07160 PF03466 LysR substrate binding domain CTI08_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_07170 PF07690 Major Facilitator Superfamily CTI08_07175 PF00456 Transketolase, thiamine diphosphate binding domain CTI08_07180 PF02779 Transketolase, pyrimidine binding domain CTI08_07180 PF02780 Transketolase, C-terminal domain CTI08_07185 PF02310 B12 binding domain CTI08_07185 PF02607 B12 binding domain CTI08_07185 PF02574 Homocysteine S-methyltransferase CTI08_07185 PF00809 Pterin binding enzyme CTI08_07185 PF02965 Vitamin B12 dependent methionine synthase, activation domain CTI08_07190 PF01384 Phosphate transporter family CTI08_07195 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_07210 PF03781 Sulfatase-modifying factor enzyme 1 CTI08_07215 PF00884 Sulfatase CTI08_07225 PF01106 NifU-like domain CTI08_07225 PF01521 Iron-sulphur cluster biosynthesis CTI08_07230 PF07715 TonB-dependent Receptor Plug Domain CTI08_07230 PF00593 TonB dependent receptor CTI08_07240 PF00561 alpha/beta hydrolase fold CTI08_07245 PF00484 Carbonic anhydrase CTI08_07250 PF13472 GDSL-like Lipase/Acylhydrolase family CTI08_07255 PF00005 ABC transporter CTI08_07265 PF01694 Rhomboid family CTI08_07270 PF00912 Transglycosylase CTI08_07275 PF13090 Polyphosphate kinase C-terminal domain 2 CTI08_07275 PF02503 Polyphosphate kinase middle domain CTI08_07275 PF17941 Polyphosphate kinase C-terminal domain 1 CTI08_07275 PF13089 Polyphosphate kinase N-terminal domain CTI08_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_07290 PF03466 LysR substrate binding domain CTI08_07295 PF00561 alpha/beta hydrolase fold CTI08_07300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_07300 PF18113 Rubredoxin binding C-terminal domain CTI08_07305 PF00301 Rubredoxin CTI08_07320 PF00152 tRNA synthetases class II (D, K and N) CTI08_07320 PF01336 OB-fold nucleic acid binding domain CTI08_07325 PF14052 Capsule assembly protein Wzi CTI08_07335 PF01507 Phosphoadenosine phosphosulfate reductase family CTI08_07340 PF00009 Elongation factor Tu GTP binding domain CTI08_07355 PF03600 Citrate transporter CTI08_07365 PF00571 CBS domain CTI08_07365 PF03471 Transporter associated domain CTI08_07365 PF01595 Cyclin M transmembrane N-terminal domain CTI08_07370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_07370 PF03466 LysR substrate binding domain CTI08_07375 PF00463 Isocitrate lyase family CTI08_07390 PF01774 UreD urease accessory protein CTI08_07395 PF00547 Urease, gamma subunit CTI08_07400 PF00699 Urease beta subunit CTI08_07405 PF01979 Amidohydrolase family CTI08_07405 PF00449 Urease alpha-subunit, N-terminal domain CTI08_07410 PF05194 UreE urease accessory protein, C-terminal domain CTI08_07410 PF02814 UreE urease accessory protein, N-terminal domain CTI08_07415 PF01730 UreF CTI08_07420 PF02492 CobW/HypB/UreG, nucleotide-binding domain CTI08_07435 PF03717 Penicillin-binding Protein dimerisation domain CTI08_07435 PF00905 Penicillin binding protein transpeptidase domain CTI08_07450 PF05191 Adenylate kinase, active site lid CTI08_07460 PF00730 HhH-GPD superfamily base excision DNA repair protein CTI08_07460 PF00633 Helix-hairpin-helix motif CTI08_07460 PF10576 Iron-sulfur binding domain of endonuclease III CTI08_07465 PF04060 Putative Fe-S cluster CTI08_07470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CTI08_07470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CTI08_07480 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CTI08_07485 PF02590 Predicted SPOUT methyltransferase CTI08_07490 PF05362 Lon protease (S16) C-terminal proteolytic domain CTI08_07490 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_07490 PF02190 ATP-dependent protease La (LON) substrate-binding domain CTI08_07495 PF03895 YadA-like membrane anchor domain CTI08_07495 PF05658 Head domain of trimeric autotransporter adhesin CTI08_07495 PF05662 Coiled stalk of trimeric autotransporter adhesin CTI08_07495 PF13018 Extended Signal Peptide of Type V secretion system CTI08_07505 PF01812 5-formyltetrahydrofolate cyclo-ligase family CTI08_07605 PF03796 DnaB-like helicase C terminal domain CTI08_07605 PF00772 DnaB-like helicase N terminal domain CTI08_07870 PF01555 DNA methylase CTI08_08075 PF08525 Opacity-associated protein A N-terminal motif CTI08_08075 PF01551 Peptidase family M23 CTI08_08075 PF01476 LysM domain CTI08_08120 PF13356 Arm DNA-binding domain CTI08_08120 PF00589 Phage integrase family CTI08_08130 PF00854 POT family CTI08_08140 PF04345 Chorismate lyase CTI08_08145 PF01040 UbiA prenyltransferase family CTI08_08180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CTI08_08180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CTI08_08185 PF01784 NIF3 (NGG1p interacting factor 3) CTI08_08190 PF13180 PDZ domain CTI08_08195 PF12627 Probable RNA and SrmB- binding site of polymerase A CTI08_08195 PF01743 Poly A polymerase head domain CTI08_08200 PF01515 Phosphate acetyl/butaryl transferase CTI08_08200 PF03949 Malic enzyme, NAD binding domain CTI08_08200 PF00390 Malic enzyme, N-terminal domain CTI08_08205 PF00563 EAL domain CTI08_08205 PF03707 Bacterial signalling protein N terminal repeat CTI08_08205 PF00990 Diguanylate cyclase, GGDEF domain CTI08_08210 PF04452 RNA methyltransferase CTI08_08215 PF02219 Methylenetetrahydrofolate reductase CTI08_08220 PF05221 S-adenosyl-L-homocysteine hydrolase CTI08_08220 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CTI08_08235 PF09317 Domain of unknown function (DUF1974) CTI08_08235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_08235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_08240 PF04055 Radical SAM superfamily CTI08_08245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTI08_08245 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_08255 PF07690 Major Facilitator Superfamily CTI08_08265 PF00557 Metallopeptidase family M24 CTI08_08270 PF00318 Ribosomal protein S2 CTI08_08275 PF00889 Elongation factor TS CTI08_08285 PF12833 Helix-turn-helix domain CTI08_08305 PF05036 Sporulation related domain CTI08_08305 PF03330 Lytic transglycolase CTI08_08310 PF13406 Transglycosylase SLT domain CTI08_08315 PF01098 Cell cycle protein CTI08_08325 PF14489 QueF-like protein CTI08_08325 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CTI08_08330 PF01061 ABC-2 type transporter CTI08_08335 PF00005 ABC transporter CTI08_08365 PF00464 Serine hydroxymethyltransferase CTI08_08370 PF02321 Outer membrane efflux protein CTI08_08375 PF00873 AcrB/AcrD/AcrF family CTI08_08380 PF13533 Biotin-lipoyl like CTI08_08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_08385 PF03466 LysR substrate binding domain CTI08_08390 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTI08_08395 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_08400 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_08405 PF00005 ABC transporter CTI08_08410 PF00893 Small Multidrug Resistance protein CTI08_08415 PF00037 4Fe-4S binding domain CTI08_08425 PF00392 Bacterial regulatory proteins, gntR family CTI08_08425 PF00155 Aminotransferase class I and II CTI08_08430 PF02567 Phenazine biosynthesis-like protein CTI08_08435 PF00175 Oxidoreductase NAD-binding domain CTI08_08435 PF00970 Oxidoreductase FAD-binding domain CTI08_08440 PF01980 tRNA-methyltransferase O CTI08_08440 PF18389 TrmO C-terminal domain CTI08_08450 PF00437 Type II/IV secretion system protein CTI08_08460 PF00072 Response regulator receiver domain CTI08_08460 PF00486 Transcriptional regulatory protein, C terminal CTI08_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_08465 PF08521 Two-component sensor kinase N-terminal CTI08_08465 PF00512 His Kinase A (phospho-acceptor) domain CTI08_08475 PF00293 NUDIX domain CTI08_08485 PF00912 Transglycosylase CTI08_08485 PF00905 Penicillin binding protein transpeptidase domain CTI08_08485 PF14814 Bifunctional transglycosylase second domain CTI08_08490 PF01513 ATP-NAD kinase CTI08_08495 PF07023 Protein of unknown function (DUF1315) CTI08_08500 PF00591 Glycosyl transferase family, a/b domain CTI08_08500 PF02885 Glycosyl transferase family, helical bundle domain CTI08_08510 PF00375 Sodium:dicarboxylate symporter family CTI08_08515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_08515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_08515 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_08520 PF00756 Putative esterase CTI08_08525 PF01842 ACT domain CTI08_08525 PF01817 Chorismate mutase type II CTI08_08525 PF00800 Prephenate dehydratase CTI08_08530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CTI08_08540 PF01546 Peptidase family M20/M25/M40 CTI08_08540 PF07687 Peptidase dimerisation domain CTI08_08545 PF12706 Beta-lactamase superfamily domain CTI08_08555 PF03883 Peroxide stress protein YaaA CTI08_08565 PF05690 Thiazole biosynthesis protein ThiG CTI08_08575 PF04241 Protein of unknown function (DUF423) CTI08_08580 PF00140 Sigma-70 factor, region 1.2 CTI08_08580 PF04545 Sigma-70, region 4 CTI08_08580 PF04542 Sigma-70 region 2 CTI08_08590 PF00313 'Cold-shock' DNA-binding domain CTI08_08595 PF00271 Helicase conserved C-terminal domain CTI08_08595 PF00270 DEAD/DEAH box helicase CTI08_08605 PF00881 Nitroreductase family CTI08_08610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CTI08_08610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CTI08_08630 PF01180 Dihydroorotate dehydrogenase CTI08_08635 PF02674 Colicin V production protein CTI08_08640 PF00156 Phosphoribosyl transferase domain CTI08_08655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTI08_08655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTI08_08660 PF01435 Peptidase family M48 CTI08_08665 PF09424 Yqey-like protein CTI08_08670 PF01165 Ribosomal protein S21 CTI08_08675 PF00814 Glycoprotease family CTI08_08695 PF00069 Protein kinase domain CTI08_08720 PF03466 LysR substrate binding domain CTI08_08720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_08725 PF00202 Aminotransferase class-III CTI08_08730 PF00171 Aldehyde dehydrogenase family CTI08_08735 PF00324 Amino acid permease CTI08_08775 PF04076 Bacterial OB fold (BOF) protein CTI08_08800 PF00561 alpha/beta hydrolase fold CTI08_08805 PF03616 Sodium/glutamate symporter CTI08_08815 PF00392 Bacterial regulatory proteins, gntR family CTI08_08815 PF07729 FCD domain CTI08_08865 PF08946 Osmosensory transporter coiled coil CTI08_08865 PF00083 Sugar (and other) transporter CTI08_08890 PF00155 Aminotransferase class I and II CTI08_08895 PF02080 TrkA-C domain CTI08_08895 PF06826 Predicted Permease Membrane Region CTI08_08905 PF04403 Paraquat-inducible protein A CTI08_08910 PF02470 MlaD protein CTI08_08920 PF01177 Asp/Glu/Hydantoin racemase CTI08_08925 PF00892 EamA-like transporter family CTI08_08930 PF07995 Glucose / Sorbosone dehydrogenase CTI08_08950 PF00375 Sodium:dicarboxylate symporter family CTI08_08960 PF16123 Hydroxyacylglutathione hydrolase C-terminus CTI08_08960 PF00753 Metallo-beta-lactamase superfamily CTI08_08965 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_08970 PF00005 ABC transporter CTI08_08970 PF09383 NIL domain CTI08_08975 PF03180 NLPA lipoprotein CTI08_08980 PF02843 Phosphoribosylglycinamide synthetase, C domain CTI08_08980 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CTI08_08980 PF02844 Phosphoribosylglycinamide synthetase, N domain CTI08_08985 PF02142 MGS-like domain CTI08_08985 PF01808 AICARFT/IMPCHase bienzyme CTI08_08990 PF02954 Bacterial regulatory protein, Fis family CTI08_09010 PF01134 Glucose inhibited division protein A CTI08_09010 PF13932 GidA associated domain CTI08_09020 PF14403 Circularly permuted ATP-grasp type 2 CTI08_09030 PF01841 Transglutaminase-like superfamily CTI08_09030 PF08379 Bacterial transglutaminase-like N-terminal region CTI08_09040 PF01168 Alanine racemase, N-terminal domain CTI08_09040 PF00842 Alanine racemase, C-terminal domain CTI08_09045 PF03796 DnaB-like helicase C terminal domain CTI08_09045 PF00772 DnaB-like helicase N terminal domain CTI08_09050 PF03948 Ribosomal protein L9, C-terminal domain CTI08_09050 PF01281 Ribosomal protein L9, N-terminal domain CTI08_09055 PF01084 Ribosomal protein S18 CTI08_09060 PF01250 Ribosomal protein S6 CTI08_09065 PF01040 UbiA prenyltransferase family CTI08_09070 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CTI08_09075 PF00510 Cytochrome c oxidase subunit III CTI08_09080 PF00115 Cytochrome C and Quinol oxidase polypeptide I CTI08_09085 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CTI08_09085 PF06481 COX Aromatic Rich Motif CTI08_09095 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CTI08_09095 PF02896 PEP-utilising enzyme, TIM barrel domain CTI08_09095 PF00391 PEP-utilising enzyme, mobile domain CTI08_09100 PF03618 Kinase/pyrophosphorylase CTI08_09110 PF14883 Hypothetical glycosyl hydrolase family 13 CTI08_09110 PF01522 Polysaccharide deacetylase CTI08_09115 PF00535 Glycosyl transferase family 2 CTI08_09120 PF13994 PgaD-like protein CTI08_09130 PF00296 Luciferase-like monooxygenase CTI08_09150 PF03466 LysR substrate binding domain CTI08_09150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_09160 PF00472 RF-1 domain CTI08_09160 PF03462 PCRF domain CTI08_09165 PF13847 Methyltransferase domain CTI08_09165 PF17827 PrmC N-terminal domain CTI08_09170 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_09175 PF09084 NMT1/THI5 like CTI08_09180 PF12833 Helix-turn-helix domain CTI08_09185 PF00106 short chain dehydrogenase CTI08_09190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_09190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_09190 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_09195 PF00501 AMP-binding enzyme CTI08_09195 PF13193 AMP-binding enzyme C-terminal domain CTI08_09200 PF01613 Flavin reductase like domain CTI08_09205 PF00899 ThiF family CTI08_09210 PF03109 ABC1 family CTI08_09225 PF03814 Potassium-transporting ATPase A subunit CTI08_09235 PF02669 K+-transporting ATPase, c chain CTI08_09240 PF02702 Osmosensitive K+ channel His kinase sensor domain CTI08_09240 PF00512 His Kinase A (phospho-acceptor) domain CTI08_09240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_09240 PF13493 Domain of unknown function (DUF4118) CTI08_09245 PF00486 Transcriptional regulatory protein, C terminal CTI08_09245 PF00072 Response regulator receiver domain CTI08_09250 PF00120 Glutamine synthetase, catalytic domain CTI08_09260 PF03232 Ubiquinone biosynthesis protein COQ7 CTI08_09265 PF07690 Major Facilitator Superfamily CTI08_09270 PF07244 Surface antigen variable number repeat CTI08_09270 PF01103 Surface antigen CTI08_09270 PF17243 POTRA domain TamA domain 1 CTI08_09290 PF11791 Aconitate B N-terminal domain CTI08_09290 PF06434 Aconitate hydratase 2 N-terminus CTI08_09290 PF00330 Aconitase family (aconitate hydratase) CTI08_09300 PF00027 Cyclic nucleotide-binding domain CTI08_09300 PF00520 Ion transport protein CTI08_09305 PF07690 Major Facilitator Superfamily CTI08_09320 PF03466 LysR substrate binding domain CTI08_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_09325 PF04284 Protein of unknown function (DUF441) CTI08_09335 PF00849 RNA pseudouridylate synthase CTI08_09335 PF01479 S4 domain CTI08_09350 PF00849 RNA pseudouridylate synthase CTI08_09350 PF01479 S4 domain CTI08_09355 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CTI08_09360 PF01119 DNA mismatch repair protein, C-terminal domain CTI08_09360 PF08676 MutL C terminal dimerisation domain CTI08_09370 PF17209 Hfq protein CTI08_09380 PF00881 Nitroreductase family CTI08_09390 PF00149 Calcineurin-like phosphoesterase CTI08_09395 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CTI08_09400 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTI08_09400 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CTI08_09405 PF00117 Glutamine amidotransferase class-I CTI08_09405 PF02540 NAD synthase CTI08_09405 PF00958 GMP synthase C terminal domain CTI08_09410 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CTI08_09415 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CTI08_09420 PF13520 Amino acid permease CTI08_09425 PF00171 Aldehyde dehydrogenase family CTI08_09440 PF00465 Iron-containing alcohol dehydrogenase CTI08_09445 PF05970 PIF1-like helicase CTI08_09445 PF14493 Helix-turn-helix domain CTI08_09455 PF06445 GyrI-like small molecule binding domain CTI08_09460 PF02110 Hydroxyethylthiazole kinase family CTI08_09475 PF11940 Domain of unknown function (DUF3458) Ig-like fold CTI08_09475 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CTI08_09475 PF01433 Peptidase family M1 domain CTI08_09485 PF00106 short chain dehydrogenase CTI08_09495 PF01817 Chorismate mutase type II CTI08_09500 PF01037 Lrp/AsnC ligand binding domain CTI08_09515 PF00440 Bacterial regulatory proteins, tetR family CTI08_09520 PF00593 TonB dependent receptor CTI08_09520 PF07715 TonB-dependent Receptor Plug Domain CTI08_09525 PF00924 Mechanosensitive ion channel CTI08_09555 PF07715 TonB-dependent Receptor Plug Domain CTI08_09555 PF00593 TonB dependent receptor CTI08_09575 PF12848 ABC transporter CTI08_09575 PF00005 ABC transporter CTI08_09580 PF00582 Universal stress protein family CTI08_09600 PF00690 Cation transporter/ATPase, N-terminus CTI08_09600 PF00689 Cation transporting ATPase, C-terminus CTI08_09605 PF02308 MgtC family CTI08_09610 PF03594 Benzoate membrane transport protein CTI08_09615 PF01037 Lrp/AsnC ligand binding domain CTI08_09620 PF01810 LysE type translocator CTI08_09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_09630 PF03466 LysR substrate binding domain CTI08_09640 PF00108 Thiolase, N-terminal domain CTI08_09640 PF02803 Thiolase, C-terminal domain CTI08_09665 PF07690 Major Facilitator Superfamily CTI08_09670 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CTI08_09670 PF12170 DNA polymerase III tau subunit V interacting with alpha CTI08_09670 PF12169 DNA polymerase III subunits gamma and tau domain III CTI08_09680 PF03061 Thioesterase superfamily CTI08_09685 PF00465 Iron-containing alcohol dehydrogenase CTI08_09695 PF01451 Low molecular weight phosphotyrosine protein phosphatase CTI08_09700 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CTI08_09700 PF01565 FAD binding domain CTI08_09715 PF01645 Conserved region in glutamate synthase CTI08_09735 PF12832 MFS_1 like family CTI08_09745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTI08_09745 PF00289 Biotin carboxylase, N-terminal domain CTI08_09745 PF02785 Biotin carboxylase C-terminal domain CTI08_09750 PF00364 Biotin-requiring enzyme CTI08_09755 PF01220 Dehydroquinase class II CTI08_09760 PF11799 impB/mucB/samB family C-terminal domain CTI08_09760 PF00817 impB/mucB/samB family CTI08_09760 PF13438 Domain of unknown function (DUF4113) CTI08_09765 PF00005 ABC transporter CTI08_09770 PF00486 Transcriptional regulatory protein, C terminal CTI08_09770 PF00072 Response regulator receiver domain CTI08_09780 PF13806 Rieske-like [2Fe-2S] domain CTI08_09780 PF18267 Rubredoxin NAD+ reductase C-terminal domain CTI08_09780 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_09780 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTI08_09780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTI08_09780 PF04324 BFD-like [2Fe-2S] binding domain CTI08_09785 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CTI08_09785 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_09785 PF18267 Rubredoxin NAD+ reductase C-terminal domain CTI08_09785 PF04324 BFD-like [2Fe-2S] binding domain CTI08_09785 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CTI08_09790 PF04324 BFD-like [2Fe-2S] binding domain CTI08_09790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTI08_09790 PF00384 Molybdopterin oxidoreductase CTI08_09790 PF01568 Molydopterin dinucleotide binding domain CTI08_09795 PF12804 MobA-like NTP transferase domain CTI08_09800 PF01568 Molydopterin dinucleotide binding domain CTI08_09800 PF00384 Molybdopterin oxidoreductase CTI08_09800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTI08_09805 PF04055 Radical SAM superfamily CTI08_09805 PF06463 Molybdenum Cofactor Synthesis C CTI08_09815 PF02391 MoaE protein CTI08_09820 PF00994 Probable molybdopterin binding domain CTI08_09820 PF01967 MoaC family CTI08_09825 PF03453 MoeA N-terminal region (domain I and II) CTI08_09825 PF00994 Probable molybdopterin binding domain CTI08_09825 PF03454 MoeA C-terminal region (domain IV) CTI08_09830 PF01638 HxlR-like helix-turn-helix CTI08_09835 PF00392 Bacterial regulatory proteins, gntR family CTI08_09835 PF00155 Aminotransferase class I and II CTI08_09840 PF00892 EamA-like transporter family CTI08_09860 PF02635 DsrE/DsrF-like family CTI08_09865 PF16363 GDP-mannose 4,6 dehydratase CTI08_09870 PF00206 Lyase CTI08_09870 PF10415 Fumarase C C-terminus CTI08_09895 PF01266 FAD dependent oxidoreductase CTI08_09905 PF02542 YgbB family CTI08_09915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTI08_09915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTI08_09920 PF00440 Bacterial regulatory proteins, tetR family CTI08_09925 PF02954 Bacterial regulatory protein, Fis family CTI08_09925 PF00072 Response regulator receiver domain CTI08_09925 PF00158 Sigma-54 interaction domain CTI08_09930 PF00512 His Kinase A (phospho-acceptor) domain CTI08_09930 PF00989 PAS fold CTI08_09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_09935 PF04055 Radical SAM superfamily CTI08_09935 PF18693 TRAM domain CTI08_09935 PF00919 Uncharacterized protein family UPF0004 CTI08_09940 PF00696 Amino acid kinase family CTI08_09945 PF01765 Ribosome recycling factor CTI08_09950 PF01255 Putative undecaprenyl diphosphate synthase CTI08_09960 PF13288 DXP reductoisomerase C-terminal domain CTI08_09960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CTI08_09960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CTI08_09965 PF02163 Peptidase family M50 CTI08_09965 PF17820 PDZ domain CTI08_09965 PF13180 PDZ domain CTI08_09970 PF07244 Surface antigen variable number repeat CTI08_09970 PF01103 Surface antigen CTI08_09980 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CTI08_09980 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_09985 PF07977 FabA-like domain CTI08_09990 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_09990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CTI08_10005 PF02631 RecX family CTI08_10010 PF00154 recA bacterial DNA recombination protein CTI08_10015 PF01479 S4 domain CTI08_10020 PF13419 Haloacid dehalogenase-like hydrolase CTI08_10045 PF01037 Lrp/AsnC ligand binding domain CTI08_10050 PF00266 Aminotransferase class-V CTI08_10055 PF00324 Amino acid permease CTI08_10070 PF05922 Peptidase inhibitor I9 CTI08_10070 PF00082 Subtilase family CTI08_10075 PF00916 Sulfate permease family CTI08_10075 PF01740 STAS domain CTI08_10080 PF02586 SOS response associated peptidase (SRAP) CTI08_10085 PF07995 Glucose / Sorbosone dehydrogenase CTI08_10095 PF00990 Diguanylate cyclase, GGDEF domain CTI08_10095 PF00563 EAL domain CTI08_10095 PF03707 Bacterial signalling protein N terminal repeat CTI08_10115 PF02378 Phosphotransferase system, EIIC CTI08_10115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CTI08_10120 PF00294 pfkB family carbohydrate kinase CTI08_10125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CTI08_10125 PF00381 PTS HPr component phosphorylation site CTI08_10125 PF02896 PEP-utilising enzyme, TIM barrel domain CTI08_10125 PF00391 PEP-utilising enzyme, mobile domain CTI08_10125 PF05524 PEP-utilising enzyme, N-terminal CTI08_10150 PF05525 Branched-chain amino acid transport protein CTI08_10155 PF00557 Metallopeptidase family M24 CTI08_10160 PF03466 LysR substrate binding domain CTI08_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_10170 PF00462 Glutaredoxin CTI08_10175 PF00202 Aminotransferase class-III CTI08_10180 PF00478 IMP dehydrogenase / GMP reductase domain CTI08_10180 PF00571 CBS domain CTI08_10205 PF00448 SRP54-type protein, GTPase domain CTI08_10205 PF02881 SRP54-type protein, helical bundle domain CTI08_10215 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CTI08_10235 PF08173 Membrane bound YbgT-like protein CTI08_10240 PF02322 Cytochrome bd terminal oxidase subunit II CTI08_10245 PF01654 Cytochrome bd terminal oxidase subunit I CTI08_10255 PF07290 Protein of unknown function (DUF1449) CTI08_10265 PF00294 pfkB family carbohydrate kinase CTI08_10270 PF07715 TonB-dependent Receptor Plug Domain CTI08_10270 PF00593 TonB dependent receptor CTI08_10275 PF08367 Peptidase M16C associated CTI08_10275 PF00675 Insulinase (Peptidase family M16) CTI08_10275 PF05193 Peptidase M16 inactive domain CTI08_10280 PF02253 Phospholipase A1 CTI08_10285 PF02386 Cation transport protein CTI08_10290 PF02254 TrkA-N domain CTI08_10290 PF02080 TrkA-C domain CTI08_10295 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_10295 PF00585 C-terminal regulatory domain of Threonine dehydratase CTI08_10300 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CTI08_10315 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTI08_10315 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTI08_10325 PF02617 ATP-dependent Clp protease adaptor protein ClpS CTI08_10330 PF17871 AAA lid domain CTI08_10330 PF07724 AAA domain (Cdc48 subfamily) CTI08_10330 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_10330 PF02861 Clp amino terminal domain, pathogenicity island component CTI08_10330 PF10431 C-terminal, D2-small domain, of ClpB protein CTI08_10335 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CTI08_10340 PF00793 DAHP synthetase I family CTI08_10355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_10355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTI08_10385 PF06418 CTP synthase N-terminus CTI08_10385 PF00117 Glutamine amidotransferase class-I CTI08_10390 PF00793 DAHP synthetase I family CTI08_10395 PF03952 Enolase, N-terminal domain CTI08_10395 PF00113 Enolase, C-terminal TIM barrel domain CTI08_10400 PF04239 Protein of unknown function (DUF421) CTI08_10405 PF04977 Septum formation initiator CTI08_10410 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTI08_10415 PF01144 Coenzyme A transferase CTI08_10420 PF01144 Coenzyme A transferase CTI08_10425 PF02803 Thiolase, C-terminal domain CTI08_10425 PF00108 Thiolase, N-terminal domain CTI08_10430 PF00206 Lyase CTI08_10430 PF10397 Adenylosuccinate lyase C-terminus CTI08_10435 PF00561 alpha/beta hydrolase fold CTI08_10440 PF07690 Major Facilitator Superfamily CTI08_10445 PF02627 Carboxymuconolactone decarboxylase family CTI08_10450 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CTI08_10450 PF00775 Dioxygenase CTI08_10455 PF00775 Dioxygenase CTI08_10460 PF01487 Type I 3-dehydroquinase CTI08_10465 PF05048 Periplasmic copper-binding protein (NosD) CTI08_10470 PF04966 Carbohydrate-selective porin, OprB family CTI08_10475 PF01011 PQQ enzyme repeat CTI08_10475 PF13360 PQQ-like domain CTI08_10485 PF04143 Sulphur transport CTI08_10495 PF00753 Metallo-beta-lactamase superfamily CTI08_10500 PF01614 Bacterial transcriptional regulator CTI08_10500 PF09339 IclR helix-turn-helix domain CTI08_10505 PF03466 LysR substrate binding domain CTI08_10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_10510 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_10510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_10510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_10525 PF00106 short chain dehydrogenase CTI08_10535 PF07690 Major Facilitator Superfamily CTI08_10545 PF01425 Amidase CTI08_10550 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTI08_10565 PF00355 Rieske [2Fe-2S] domain CTI08_10565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTI08_10580 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_10580 PF00175 Oxidoreductase NAD-binding domain CTI08_10585 PF01613 Flavin reductase like domain CTI08_10590 PF12833 Helix-turn-helix domain CTI08_10590 PF02311 AraC-like ligand binding domain CTI08_10595 PF01179 Copper amine oxidase, enzyme domain CTI08_10595 PF07833 Copper amine oxidase N-terminal domain CTI08_10595 PF02728 Copper amine oxidase, N3 domain CTI08_10595 PF02727 Copper amine oxidase, N2 domain CTI08_10605 PF00171 Aldehyde dehydrogenase family CTI08_10610 PF01804 Penicillin amidase CTI08_10615 PF12146 Serine aminopeptidase, S33 CTI08_10620 PF02803 Thiolase, C-terminal domain CTI08_10620 PF00108 Thiolase, N-terminal domain CTI08_10625 PF01144 Coenzyme A transferase CTI08_10635 PF04444 Catechol dioxygenase N terminus CTI08_10635 PF00775 Dioxygenase CTI08_10640 PF02426 Muconolactone delta-isomerase CTI08_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_10650 PF03466 LysR substrate binding domain CTI08_10660 PF07729 FCD domain CTI08_10660 PF00392 Bacterial regulatory proteins, gntR family CTI08_10665 PF00920 Dehydratase family CTI08_10670 PF07690 Major Facilitator Superfamily CTI08_10680 PF00171 Aldehyde dehydrogenase family CTI08_10700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_10700 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_10700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_10710 PF02954 Bacterial regulatory protein, Fis family CTI08_10710 PF06506 Propionate catabolism activator CTI08_10710 PF00158 Sigma-54 interaction domain CTI08_10715 PF00501 AMP-binding enzyme CTI08_10715 PF13193 AMP-binding enzyme C-terminal domain CTI08_10720 PF04341 Protein of unknown function, DUF485 CTI08_10725 PF00474 Sodium:solute symporter family CTI08_10730 PF00107 Zinc-binding dehydrogenase CTI08_10730 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_10735 PF00171 Aldehyde dehydrogenase family CTI08_10745 PF00561 alpha/beta hydrolase fold CTI08_10750 PF06628 Catalase-related immune-responsive CTI08_10750 PF00199 Catalase CTI08_10770 PF07859 alpha/beta hydrolase fold CTI08_10775 PF01047 MarR family CTI08_10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_10780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CTI08_10785 PF00106 short chain dehydrogenase CTI08_10790 PF01872 RibD C-terminal domain CTI08_10795 PF09278 MerR, DNA binding CTI08_10795 PF00376 MerR family regulatory protein CTI08_10805 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_10815 PF12706 Beta-lactamase superfamily domain CTI08_10820 PF08359 YsiA-like protein, C-terminal region CTI08_10820 PF00440 Bacterial regulatory proteins, tetR family CTI08_10830 PF00857 Isochorismatase family CTI08_10835 PF03466 LysR substrate binding domain CTI08_10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_10840 PF07995 Glucose / Sorbosone dehydrogenase CTI08_10845 PF02254 TrkA-N domain CTI08_10845 PF00999 Sodium/hydrogen exchanger family CTI08_10855 PF01546 Peptidase family M20/M25/M40 CTI08_10855 PF07687 Peptidase dimerisation domain CTI08_10870 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CTI08_10870 PF17287 POTRA domain CTI08_10870 PF08479 POTRA domain, ShlB-type CTI08_10875 PF13332 Hemagglutinin repeat CTI08_10875 PF05860 haemagglutination activity domain CTI08_10875 PF04829 Pre-toxin domain with VENN motif CTI08_10875 PF13018 Extended Signal Peptide of Type V secretion system CTI08_10890 PF07690 Major Facilitator Superfamily CTI08_10895 PF04909 Amidohydrolase CTI08_10910 PF08450 SMP-30/Gluconolactonase/LRE-like region CTI08_10920 PF03466 LysR substrate binding domain CTI08_10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_10940 PF07690 Major Facilitator Superfamily CTI08_10945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CTI08_10945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CTI08_10945 PF01842 ACT domain CTI08_10950 PF03737 Aldolase/RraA CTI08_10970 PF00529 HlyD membrane-fusion protein of T1SS CTI08_10970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_10985 PF00171 Aldehyde dehydrogenase family CTI08_10990 PF00920 Dehydratase family CTI08_11000 PF03466 LysR substrate binding domain CTI08_11000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_11005 PF01370 NAD dependent epimerase/dehydratase family CTI08_11010 PF07690 Major Facilitator Superfamily CTI08_11015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTI08_11015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTI08_11020 PF06719 AraC-type transcriptional regulator N-terminus CTI08_11020 PF12833 Helix-turn-helix domain CTI08_11035 PF00107 Zinc-binding dehydrogenase CTI08_11035 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_11050 PF00005 ABC transporter CTI08_11070 PF14572 Phosphoribosyl synthetase-associated domain CTI08_11070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CTI08_11075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CTI08_11155 PF00196 Bacterial regulatory proteins, luxR family CTI08_11160 PF01425 Amidase CTI08_11165 PF13533 Biotin-lipoyl like CTI08_11170 PF07690 Major Facilitator Superfamily CTI08_11195 PF01975 Survival protein SurE CTI08_11205 PF02824 TGS domain CTI08_11205 PF04607 Region found in RelA / SpoT proteins CTI08_11205 PF13291 ACT domain CTI08_11255 PF12146 Serine aminopeptidase, S33 CTI08_11275 PF00512 His Kinase A (phospho-acceptor) domain CTI08_11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_11275 PF00672 HAMP domain CTI08_11275 PF16527 Two-component sensor protein CpxA, periplasmic domain CTI08_11280 PF00486 Transcriptional regulatory protein, C terminal CTI08_11280 PF00072 Response regulator receiver domain CTI08_11285 PF00529 HlyD membrane-fusion protein of T1SS CTI08_11285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_11290 PF00873 AcrB/AcrD/AcrF family CTI08_11295 PF02321 Outer membrane efflux protein CTI08_11300 PF12146 Serine aminopeptidase, S33 CTI08_11305 PF00743 Flavin-binding monooxygenase-like CTI08_11310 PF01593 Flavin containing amine oxidoreductase CTI08_11325 PF01266 FAD dependent oxidoreductase CTI08_11350 PF02753 Pili assembly chaperone PapD, C-terminal domain CTI08_11350 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CTI08_11355 PF00577 Outer membrane usher protein CTI08_11355 PF13954 PapC N-terminal domain CTI08_11355 PF13953 PapC C-terminal domain CTI08_11360 PF00419 Fimbrial protein CTI08_11370 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_11370 PF00107 Zinc-binding dehydrogenase CTI08_11380 PF00199 Catalase CTI08_11395 PF13091 PLD-like domain CTI08_11415 PF01244 Membrane dipeptidase (Peptidase family M19) CTI08_11420 PF04055 Radical SAM superfamily CTI08_11420 PF13186 Iron-sulfur cluster-binding domain CTI08_11425 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CTI08_11430 PF03070 TENA/THI-4/PQQC family CTI08_11435 PF12706 Beta-lactamase superfamily domain CTI08_11440 PF08042 PqqA family CTI08_11445 PF13089 Polyphosphate kinase N-terminal domain CTI08_11445 PF17941 Polyphosphate kinase C-terminal domain 1 CTI08_11445 PF13090 Polyphosphate kinase C-terminal domain 2 CTI08_11445 PF02503 Polyphosphate kinase middle domain CTI08_11450 PF00149 Calcineurin-like phosphoesterase CTI08_11460 PF00857 Isochorismatase family CTI08_11460 PF00550 Phosphopantetheine attachment site CTI08_11465 PF00106 short chain dehydrogenase CTI08_11470 PF00005 ABC transporter CTI08_11470 PF03459 TOBE domain CTI08_11475 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_11485 PF03459 TOBE domain CTI08_11485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_11490 PF00355 Rieske [2Fe-2S] domain CTI08_11490 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTI08_11495 PF00866 Ring hydroxylating beta subunit CTI08_11500 PF00175 Oxidoreductase NAD-binding domain CTI08_11500 PF00970 Oxidoreductase FAD-binding domain CTI08_11500 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_11505 PF12833 Helix-turn-helix domain CTI08_11505 PF14525 AraC-binding-like domain CTI08_11515 PF01613 Flavin reductase like domain CTI08_11530 PF01738 Dienelactone hydrolase family CTI08_11535 PF07690 Major Facilitator Superfamily CTI08_11540 PF12833 Helix-turn-helix domain CTI08_11540 PF06719 AraC-type transcriptional regulator N-terminus CTI08_11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_11560 PF03466 LysR substrate binding domain CTI08_11565 PF01144 Coenzyme A transferase CTI08_11570 PF01144 Coenzyme A transferase CTI08_11575 PF02667 Short chain fatty acid transporter CTI08_11580 PF00108 Thiolase, N-terminal domain CTI08_11580 PF02803 Thiolase, C-terminal domain CTI08_11585 PF03466 LysR substrate binding domain CTI08_11585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_11590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_11590 PF03466 LysR substrate binding domain CTI08_11605 PF00206 Lyase CTI08_11605 PF10415 Fumarase C C-terminus CTI08_11610 PF00593 TonB dependent receptor CTI08_11610 PF07715 TonB-dependent Receptor Plug Domain CTI08_11615 PF00083 Sugar (and other) transporter CTI08_11630 PF00005 ABC transporter CTI08_11635 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_11640 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CTI08_11665 PF02525 Flavodoxin-like fold CTI08_11670 PF01638 HxlR-like helix-turn-helix CTI08_11675 PF12833 Helix-turn-helix domain CTI08_11675 PF06445 GyrI-like small molecule binding domain CTI08_11690 PF01925 Sulfite exporter TauE/SafE CTI08_11695 PF04273 Putative phosphatase (DUF442) CTI08_11695 PF00753 Metallo-beta-lactamase superfamily CTI08_11700 PF00753 Metallo-beta-lactamase superfamily CTI08_11700 PF04273 Putative phosphatase (DUF442) CTI08_11705 PF00072 Response regulator receiver domain CTI08_11705 PF00158 Sigma-54 interaction domain CTI08_11705 PF02954 Bacterial regulatory protein, Fis family CTI08_11710 PF01062 Bestrophin, RFP-TM, chloride channel CTI08_11715 PF00107 Zinc-binding dehydrogenase CTI08_11715 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_11720 PF00106 short chain dehydrogenase CTI08_11725 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_11725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CTI08_11730 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CTI08_11730 PF02817 e3 binding domain CTI08_11730 PF00364 Biotin-requiring enzyme CTI08_11735 PF02780 Transketolase, C-terminal domain CTI08_11735 PF02779 Transketolase, pyrimidine binding domain CTI08_11740 PF00676 Dehydrogenase E1 component CTI08_11745 PF04055 Radical SAM superfamily CTI08_11760 PF00990 Diguanylate cyclase, GGDEF domain CTI08_11760 PF08448 PAS fold CTI08_11765 PF01264 Chorismate synthase CTI08_11770 PF05175 Methyltransferase small domain CTI08_11775 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_11785 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_11785 PF01434 Peptidase family M41 CTI08_11785 PF17862 AAA+ lid domain CTI08_11795 PF05166 YcgL domain CTI08_11815 PF01612 3'-5' exonuclease CTI08_11815 PF00570 HRDC domain CTI08_11820 PF13662 Toprim domain CTI08_11820 PF02132 RecR protein CTI08_11825 PF02575 YbaB/EbfC DNA-binding family CTI08_11835 PF01053 Cys/Met metabolism PLP-dependent enzyme CTI08_11840 PF00561 alpha/beta hydrolase fold CTI08_11845 PF08241 Methyltransferase domain CTI08_11875 PF01230 HIT domain CTI08_11910 PF00005 ABC transporter CTI08_11915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_11925 PF02684 Lipid-A-disaccharide synthetase CTI08_11930 PF07715 TonB-dependent Receptor Plug Domain CTI08_11930 PF00593 TonB dependent receptor CTI08_11950 PF01925 Sulfite exporter TauE/SafE CTI08_11955 PF00793 DAHP synthetase I family CTI08_11960 PF02654 Cobalamin-5-phosphate synthase CTI08_11975 PF02277 Phosphoribosyltransferase CTI08_11980 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CTI08_12015 PF07715 TonB-dependent Receptor Plug Domain CTI08_12015 PF00593 TonB dependent receptor CTI08_12040 PF04183 IucA / IucC family CTI08_12040 PF06276 Ferric iron reductase FhuF-like transporter CTI08_12045 PF06276 Ferric iron reductase FhuF-like transporter CTI08_12045 PF04183 IucA / IucC family CTI08_12050 PF07690 Major Facilitator Superfamily CTI08_12055 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CTI08_12075 PF04073 Aminoacyl-tRNA editing domain CTI08_12085 PF03109 ABC1 family CTI08_12090 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_12090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_12090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_12095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_12095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_12095 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_12100 PF00487 Fatty acid desaturase CTI08_12105 PF12852 Cupin CTI08_12105 PF12833 Helix-turn-helix domain CTI08_12110 PF00639 PPIC-type PPIASE domain CTI08_12110 PF09312 SurA N-terminal domain CTI08_12115 PF00216 Bacterial DNA-binding protein CTI08_12130 PF02082 Transcriptional regulator CTI08_12135 PF00266 Aminotransferase class-V CTI08_12140 PF01592 NifU-like N terminal domain CTI08_12145 PF01521 Iron-sulphur cluster biosynthesis CTI08_12150 PF07743 HSCB C-terminal oligomerisation domain CTI08_12150 PF00226 DnaJ domain CTI08_12155 PF00012 Hsp70 protein CTI08_12160 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_12165 PF00211 Adenylate and Guanylate cyclase catalytic domain CTI08_12175 PF02559 CarD-like/TRCF domain CTI08_12175 PF00270 DEAD/DEAH box helicase CTI08_12175 PF17757 UvrB interaction domain CTI08_12175 PF03461 TRCF domain CTI08_12175 PF00271 Helicase conserved C-terminal domain CTI08_12195 PF03737 Aldolase/RraA CTI08_12200 PF13460 NAD(P)H-binding CTI08_12205 PF01649 Ribosomal protein S20 CTI08_12215 PF00459 Inositol monophosphatase family CTI08_12230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CTI08_12230 PF00005 ABC transporter CTI08_12235 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_12240 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_12245 PF01432 Peptidase family M3 CTI08_12260 PF07715 TonB-dependent Receptor Plug Domain CTI08_12260 PF00593 TonB dependent receptor CTI08_12270 PF01618 MotA/TolQ/ExbB proton channel family CTI08_12275 PF02472 Biopolymer transport protein ExbD/TolR CTI08_12285 PF02472 Biopolymer transport protein ExbD/TolR CTI08_12290 PF02472 Biopolymer transport protein ExbD/TolR CTI08_12300 PF01274 Malate synthase CTI08_12415 PF04860 Phage portal protein CTI08_12500 PF00772 DnaB-like helicase N terminal domain CTI08_12500 PF03796 DnaB-like helicase C terminal domain CTI08_12555 PF02899 Phage integrase, N-terminal SAM-like domain CTI08_12555 PF00589 Phage integrase family CTI08_12560 PF03969 AFG1-like ATPase CTI08_12570 PF00743 Flavin-binding monooxygenase-like CTI08_12580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CTI08_12590 PF00216 Bacterial DNA-binding protein CTI08_12595 PF00575 S1 RNA binding domain CTI08_12600 PF02224 Cytidylate kinase CTI08_12610 PF14437 MafB19-like deaminase CTI08_12620 PF03167 Uracil DNA glycosylase superfamily CTI08_12630 PF03934 Type II secretion system (T2SS), protein K CTI08_12635 PF07963 Prokaryotic N-terminal methylation motif CTI08_12635 PF11612 Type II secretion system (T2SS), protein J CTI08_12640 PF07963 Prokaryotic N-terminal methylation motif CTI08_12640 PF02501 Type II secretion system (T2SS), protein I CTI08_12655 PF01026 TatD related DNase CTI08_12665 PF09115 DNA polymerase III, delta subunit, C terminal CTI08_12670 PF02348 Cytidylyltransferase CTI08_12675 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CTI08_12680 PF00005 ABC transporter CTI08_12680 PF00664 ABC transporter transmembrane region CTI08_12690 PF01618 MotA/TolQ/ExbB proton channel family CTI08_12695 PF17762 HTH domain found in ParB protein CTI08_12695 PF02195 ParB-like nuclease domain CTI08_12700 PF13614 AAA domain CTI08_12705 PF02527 rRNA small subunit methyltransferase G CTI08_12710 PF00483 Nucleotidyl transferase CTI08_12715 PF01636 Phosphotransferase enzyme family CTI08_12720 PF03968 OstA-like protein CTI08_12720 PF04453 LPS transport system D CTI08_12725 PF09312 SurA N-terminal domain CTI08_12725 PF00639 PPIC-type PPIASE domain CTI08_12730 PF01116 Fructose-bisphosphate aldolase class-II CTI08_12740 PF00162 Phosphoglycerate kinase CTI08_12750 PF02545 Maf-like protein CTI08_12755 PF08007 Cupin superfamily protein CTI08_12770 PF00375 Sodium:dicarboxylate symporter family CTI08_12775 PF06912 Protein of unknown function (DUF1275) CTI08_12780 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CTI08_12785 PF00005 ABC transporter CTI08_12785 PF00664 ABC transporter transmembrane region CTI08_12795 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTI08_12795 PF12833 Helix-turn-helix domain CTI08_12800 PF01597 Glycine cleavage H-protein CTI08_12805 PF02146 Sir2 family CTI08_12810 PF00474 Sodium:solute symporter family CTI08_12815 PF01037 Lrp/AsnC ligand binding domain CTI08_12820 PF14850 DNA-binding domain of Proline dehydrogenase CTI08_12820 PF00171 Aldehyde dehydrogenase family CTI08_12820 PF01619 Proline dehydrogenase CTI08_12820 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CTI08_12825 PF04229 GrpB protein CTI08_12830 PF05958 tRNA (Uracil-5-)-methyltransferase CTI08_12840 PF09992 Phosphodiester glycosidase CTI08_12850 PF04264 YceI-like domain CTI08_12860 PF00456 Transketolase, thiamine diphosphate binding domain CTI08_12860 PF02780 Transketolase, C-terminal domain CTI08_12860 PF02779 Transketolase, pyrimidine binding domain CTI08_12865 PF02773 S-adenosylmethionine synthetase, C-terminal domain CTI08_12865 PF02772 S-adenosylmethionine synthetase, central domain CTI08_12865 PF00438 S-adenosylmethionine synthetase, N-terminal domain CTI08_12885 PF00905 Penicillin binding protein transpeptidase domain CTI08_12900 PF02075 Crossover junction endodeoxyribonuclease RuvC CTI08_12905 PF03853 YjeF-related protein N-terminus CTI08_12905 PF01256 Carbohydrate kinase CTI08_12910 PF08331 Domain of unknown function (DUF1730) CTI08_12915 PF06968 Biotin and Thiamin Synthesis associated domain CTI08_12915 PF04055 Radical SAM superfamily CTI08_12930 PF16970 Type-1 fimbrial protein, A CTI08_12935 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CTI08_12935 PF02753 Pili assembly chaperone PapD, C-terminal domain CTI08_12940 PF00577 Outer membrane usher protein CTI08_12940 PF13954 PapC N-terminal domain CTI08_12940 PF13953 PapC C-terminal domain CTI08_12965 PF00892 EamA-like transporter family CTI08_12975 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTI08_12985 PF03466 LysR substrate binding domain CTI08_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13005 PF00440 Bacterial regulatory proteins, tetR family CTI08_13015 PF01709 Transcriptional regulator CTI08_13020 PF01037 Lrp/AsnC ligand binding domain CTI08_13030 PF00005 ABC transporter CTI08_13035 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13040 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_13055 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTI08_13065 PF00296 Luciferase-like monooxygenase CTI08_13070 PF03180 NLPA lipoprotein CTI08_13075 PF03180 NLPA lipoprotein CTI08_13080 PF00005 ABC transporter CTI08_13080 PF09383 NIL domain CTI08_13085 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13090 PF01926 50S ribosome-binding GTPase CTI08_13090 PF06071 Protein of unknown function (DUF933) CTI08_13115 PF03591 AzlC protein CTI08_13120 PF05437 Branched-chain amino acid transport protein (AzlD) CTI08_13130 PF02222 ATP-grasp domain CTI08_13135 PF08335 GlnD PII-uridylyltransferase CTI08_13135 PF01966 HD domain CTI08_13135 PF01909 Nucleotidyltransferase domain CTI08_13140 PF00155 Aminotransferase class I and II CTI08_13150 PF12852 Cupin CTI08_13150 PF12833 Helix-turn-helix domain CTI08_13155 PF00255 Glutathione peroxidase CTI08_13160 PF01641 SelR domain CTI08_13165 PF00155 Aminotransferase class I and II CTI08_13170 PF00375 Sodium:dicarboxylate symporter family CTI08_13175 PF00710 Asparaginase, N-terminal CTI08_13175 PF17763 Glutaminase/Asparaginase C-terminal domain CTI08_13180 PF01336 OB-fold nucleic acid binding domain CTI08_13180 PF14579 Helix-hairpin-helix motif CTI08_13180 PF07733 Bacterial DNA polymerase III alpha NTPase domain CTI08_13180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CTI08_13180 PF02811 PHP domain CTI08_13185 PF00588 SpoU rRNA Methylase family CTI08_13190 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_13205 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_13205 PF13192 Thioredoxin domain CTI08_13220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13220 PF03466 LysR substrate binding domain CTI08_13225 PF01758 Sodium Bile acid symporter family CTI08_13230 PF01022 Bacterial regulatory protein, arsR family CTI08_13235 PF03960 ArsC family CTI08_13245 PF13382 Adenine deaminase C-terminal domain CTI08_13245 PF01979 Amidohydrolase family CTI08_13255 PF03466 LysR substrate binding domain CTI08_13255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13265 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTI08_13270 PF01177 Asp/Glu/Hydantoin racemase CTI08_13275 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CTI08_13280 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13285 PF00005 ABC transporter CTI08_13290 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CTI08_13310 PF00296 Luciferase-like monooxygenase CTI08_13315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_13315 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTI08_13315 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_13330 PF01654 Cytochrome bd terminal oxidase subunit I CTI08_13335 PF02322 Cytochrome bd terminal oxidase subunit II CTI08_13345 PF00392 Bacterial regulatory proteins, gntR family CTI08_13345 PF00155 Aminotransferase class I and II CTI08_13350 PF03466 LysR substrate binding domain CTI08_13350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13365 PF00698 Acyl transferase domain CTI08_13370 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CTI08_13380 PF01039 Carboxyl transferase domain CTI08_13385 PF06857 Malonate decarboxylase delta subunit (MdcD) CTI08_13390 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CTI08_13395 PF16957 Malonate decarboxylase, alpha subunit, transporter CTI08_13400 PF07690 Major Facilitator Superfamily CTI08_13415 PF00392 Bacterial regulatory proteins, gntR family CTI08_13415 PF00155 Aminotransferase class I and II CTI08_13420 PF04172 LrgB-like family CTI08_13425 PF03788 LrgA family CTI08_13430 PF03466 LysR substrate binding domain CTI08_13430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13435 PF02798 Glutathione S-transferase, N-terminal domain CTI08_13435 PF14834 Glutathione S-transferase, C-terminal domain CTI08_13440 PF02798 Glutathione S-transferase, N-terminal domain CTI08_13445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13445 PF03466 LysR substrate binding domain CTI08_13455 PF00581 Rhodanese-like domain CTI08_13460 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_13470 PF00266 Aminotransferase class-V CTI08_13475 PF01810 LysE type translocator CTI08_13480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13480 PF03466 LysR substrate binding domain CTI08_13490 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTI08_13495 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTI08_13500 PF00005 ABC transporter CTI08_13505 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13510 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13525 PF00072 Response regulator receiver domain CTI08_13530 PF00512 His Kinase A (phospho-acceptor) domain CTI08_13530 PF09308 LuxQ, periplasmic CTI08_13530 PF00072 Response regulator receiver domain CTI08_13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_13540 PF13404 AsnC-type helix-turn-helix domain CTI08_13540 PF01037 Lrp/AsnC ligand binding domain CTI08_13550 PF00717 Peptidase S24-like CTI08_13575 PF06628 Catalase-related immune-responsive CTI08_13575 PF00199 Catalase CTI08_13575 PF18011 C-terminal domain found in long catalases CTI08_13585 PF02464 Competence-damaged protein CTI08_13585 PF00994 Probable molybdopterin binding domain CTI08_13585 PF18146 Damage-inducible protein CinA KH domain CTI08_13615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13615 PF03466 LysR substrate binding domain CTI08_13635 PF00501 AMP-binding enzyme CTI08_13635 PF13193 AMP-binding enzyme C-terminal domain CTI08_13640 PF00440 Bacterial regulatory proteins, tetR family CTI08_13645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_13645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_13645 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_13650 PF01039 Carboxyl transferase domain CTI08_13655 PF00378 Enoyl-CoA hydratase/isomerase CTI08_13660 PF02785 Biotin carboxylase C-terminal domain CTI08_13660 PF00364 Biotin-requiring enzyme CTI08_13660 PF00289 Biotin carboxylase, N-terminal domain CTI08_13660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTI08_13665 PF00682 HMGL-like CTI08_13670 PF03466 LysR substrate binding domain CTI08_13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13685 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_13685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_13685 PF12806 Acetyl-CoA dehydrogenase C-terminal like CTI08_13685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_13695 PF07690 Major Facilitator Superfamily CTI08_13705 PF01144 Coenzyme A transferase CTI08_13710 PF01144 Coenzyme A transferase CTI08_13715 PF07690 Major Facilitator Superfamily CTI08_13720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_13720 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_13720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_13725 PF00378 Enoyl-CoA hydratase/isomerase CTI08_13740 PF02803 Thiolase, C-terminal domain CTI08_13740 PF00108 Thiolase, N-terminal domain CTI08_13745 PF09339 IclR helix-turn-helix domain CTI08_13750 PF07690 Major Facilitator Superfamily CTI08_13755 PF03060 Nitronate monooxygenase CTI08_13760 PF00378 Enoyl-CoA hydratase/isomerase CTI08_13765 PF09339 IclR helix-turn-helix domain CTI08_13770 PF02515 CoA-transferase family III CTI08_13775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_13775 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_13775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_13780 PF07690 Major Facilitator Superfamily CTI08_13785 PF13419 Haloacid dehalogenase-like hydrolase CTI08_13790 PF00266 Aminotransferase class-V CTI08_13795 PF01266 FAD dependent oxidoreductase CTI08_13800 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_13805 PF00005 ABC transporter CTI08_13805 PF08402 TOBE domain CTI08_13815 PF00392 Bacterial regulatory proteins, gntR family CTI08_13815 PF07702 UTRA domain CTI08_13820 PF01494 FAD binding domain CTI08_13825 PF01614 Bacterial transcriptional regulator CTI08_13825 PF09339 IclR helix-turn-helix domain CTI08_13830 PF02525 Flavodoxin-like fold CTI08_13835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_13835 PF03466 LysR substrate binding domain CTI08_13840 PF02627 Carboxymuconolactone decarboxylase family CTI08_13845 PF00171 Aldehyde dehydrogenase family CTI08_13855 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CTI08_13865 PF00171 Aldehyde dehydrogenase family CTI08_13870 PF00296 Luciferase-like monooxygenase CTI08_13875 PF01613 Flavin reductase like domain CTI08_13880 PF12697 Alpha/beta hydrolase family CTI08_13900 PF01292 Prokaryotic cytochrome b561 CTI08_13905 PF00199 Catalase CTI08_13945 PF03061 Thioesterase superfamily CTI08_13950 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_13955 PF07848 PaaX-like protein CTI08_13955 PF08223 PaaX-like protein C-terminal domain CTI08_13960 PF14535 AMP-binding enzyme C-terminal domain CTI08_13960 PF00501 AMP-binding enzyme CTI08_13965 PF00108 Thiolase, N-terminal domain CTI08_13965 PF02803 Thiolase, C-terminal domain CTI08_13970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTI08_13970 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CTI08_13970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTI08_13975 PF00378 Enoyl-CoA hydratase/isomerase CTI08_13980 PF00378 Enoyl-CoA hydratase/isomerase CTI08_13985 PF00175 Oxidoreductase NAD-binding domain CTI08_13985 PF00970 Oxidoreductase FAD-binding domain CTI08_13985 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_13990 PF01883 Iron-sulfur cluster assembly protein CTI08_13995 PF05138 Phenylacetic acid catabolic protein CTI08_14000 PF06243 Phenylacetic acid degradation B CTI08_14005 PF05138 Phenylacetic acid catabolic protein CTI08_14010 PF00171 Aldehyde dehydrogenase family CTI08_14010 PF01575 MaoC like domain CTI08_14015 PF03313 Serine dehydratase alpha chain CTI08_14015 PF03315 Serine dehydratase beta chain CTI08_14020 PF13520 Amino acid permease CTI08_14025 PF00171 Aldehyde dehydrogenase family CTI08_14050 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_14050 PF04324 BFD-like [2Fe-2S] binding domain CTI08_14060 PF01266 FAD dependent oxidoreductase CTI08_14065 PF05544 Proline racemase CTI08_14070 PF00392 Bacterial regulatory proteins, gntR family CTI08_14080 PF00701 Dihydrodipicolinate synthetase family CTI08_14095 PF00376 MerR family regulatory protein CTI08_14095 PF09278 MerR, DNA binding CTI08_14105 PF02677 Epoxyqueuosine reductase QueH CTI08_14120 PF07690 Major Facilitator Superfamily CTI08_14125 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTI08_14135 PF03466 LysR substrate binding domain CTI08_14135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_14165 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_14165 PF07724 AAA domain (Cdc48 subfamily) CTI08_14165 PF17871 AAA lid domain CTI08_14165 PF10431 C-terminal, D2-small domain, of ClpB protein CTI08_14175 PF01389 OmpA-like transmembrane domain CTI08_14175 PF00691 OmpA family CTI08_14245 PF00005 ABC transporter CTI08_14250 PF00497 Bacterial extracellular solute-binding proteins, family 3 CTI08_14255 PF01425 Amidase CTI08_14260 PF08753 NikR C terminal nickel binding domain CTI08_14260 PF01402 Ribbon-helix-helix protein, copG family CTI08_14280 PF02525 Flavodoxin-like fold CTI08_14285 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTI08_14285 PF00289 Biotin carboxylase, N-terminal domain CTI08_14285 PF02785 Biotin carboxylase C-terminal domain CTI08_14300 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_14300 PF13823 Alcohol dehydrogenase GroES-associated CTI08_14300 PF00107 Zinc-binding dehydrogenase CTI08_14310 PF00440 Bacterial regulatory proteins, tetR family CTI08_14335 PF00654 Voltage gated chloride channel CTI08_14340 PF00289 Biotin carboxylase, N-terminal domain CTI08_14340 PF00364 Biotin-requiring enzyme CTI08_14340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CTI08_14340 PF02785 Biotin carboxylase C-terminal domain CTI08_14350 PF07286 Protein of unknown function (DUF1445) CTI08_14355 PF03746 LamB/YcsF family CTI08_14360 PF01566 Natural resistance-associated macrophage protein CTI08_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_14365 PF03466 LysR substrate binding domain CTI08_14380 PF05593 RHS Repeat CTI08_14380 PF14220 Domain of unknown function (DUF4329) CTI08_14380 PF03527 RHS protein CTI08_14385 PF16671 Actin cross-linking domain CTI08_14385 PF04717 Type VI secretion system, phage-baseplate injector CTI08_14400 PF13419 Haloacid dehalogenase-like hydrolase CTI08_14420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTI08_14420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTI08_14445 PF07690 Major Facilitator Superfamily CTI08_14460 PF03279 Bacterial lipid A biosynthesis acyltransferase CTI08_14465 PF03707 Bacterial signalling protein N terminal repeat CTI08_14465 PF00990 Diguanylate cyclase, GGDEF domain CTI08_14465 PF00563 EAL domain CTI08_14470 PF00892 EamA-like transporter family CTI08_14475 PF01037 Lrp/AsnC ligand binding domain CTI08_14480 PF00488 MutS domain V CTI08_14480 PF05190 MutS family domain IV CTI08_14480 PF05192 MutS domain III CTI08_14480 PF05188 MutS domain II CTI08_14480 PF01624 MutS domain I CTI08_14490 PF11953 Domain of unknown function (DUF3470) CTI08_14490 PF00037 4Fe-4S binding domain CTI08_14500 PF01596 O-methyltransferase CTI08_14510 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_14515 PF01205 Uncharacterized protein family UPF0029 CTI08_14525 PF00664 ABC transporter transmembrane region CTI08_14525 PF00005 ABC transporter CTI08_14525 PF03412 Peptidase C39 family CTI08_14530 PF02321 Outer membrane efflux protein CTI08_14540 PF00005 ABC transporter CTI08_14540 PF12399 Branched-chain amino acid ATP-binding cassette transporter CTI08_14545 PF03968 OstA-like protein CTI08_14560 PF00571 CBS domain CTI08_14560 PF01380 SIS domain CTI08_14565 PF09190 DALR domain CTI08_14565 PF01406 tRNA synthetases class I (C) catalytic domain CTI08_14595 PF01638 HxlR-like helix-turn-helix CTI08_14600 PF07690 Major Facilitator Superfamily CTI08_14630 PF14748 Pyrroline-5-carboxylate reductase dimerisation CTI08_14630 PF03807 NADP oxidoreductase coenzyme F420-dependent CTI08_14640 PF00313 'Cold-shock' DNA-binding domain CTI08_14645 PF01810 LysE type translocator CTI08_14680 PF13742 OB-fold nucleic acid binding domain CTI08_14680 PF02601 Exonuclease VII, large subunit CTI08_14720 PF09278 MerR, DNA binding CTI08_14720 PF00376 MerR family regulatory protein CTI08_14725 PF00403 Heavy-metal-associated domain CTI08_14735 PF03466 LysR substrate binding domain CTI08_14735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_14740 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTI08_14740 PF00355 Rieske [2Fe-2S] domain CTI08_14745 PF00866 Ring hydroxylating beta subunit CTI08_14750 PF00970 Oxidoreductase FAD-binding domain CTI08_14750 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_14750 PF00175 Oxidoreductase NAD-binding domain CTI08_14755 PF00106 short chain dehydrogenase CTI08_14760 PF03594 Benzoate membrane transport protein CTI08_14765 PF07690 Major Facilitator Superfamily CTI08_14775 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CTI08_14775 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CTI08_14780 PF00271 Helicase conserved C-terminal domain CTI08_14780 PF11898 Domain of unknown function (DUF3418) CTI08_14780 PF00270 DEAD/DEAH box helicase CTI08_14780 PF04408 Helicase associated domain (HA2) CTI08_14780 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CTI08_14785 PF10417 C-terminal domain of 1-Cys peroxiredoxin CTI08_14785 PF00578 AhpC/TSA family CTI08_14805 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_14805 PF13192 Thioredoxin domain CTI08_14815 PF00043 Glutathione S-transferase, C-terminal domain CTI08_14815 PF02798 Glutathione S-transferase, N-terminal domain CTI08_14825 PF02390 Putative methyltransferase CTI08_14830 PF00043 Glutathione S-transferase, C-terminal domain CTI08_14830 PF13417 Glutathione S-transferase, N-terminal domain CTI08_14840 PF13488 Glycine zipper CTI08_14840 PF00691 OmpA family CTI08_14845 PF01979 Amidohydrolase family CTI08_14850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CTI08_14850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CTI08_14860 PF02926 THUMP domain CTI08_14860 PF01170 Putative RNA methylase family UPF0020 CTI08_14860 PF10672 S-adenosylmethionine-dependent methyltransferase CTI08_14875 PF02861 Clp amino terminal domain, pathogenicity island component CTI08_14875 PF17871 AAA lid domain CTI08_14875 PF00004 ATPase family associated with various cellular activities (AAA) CTI08_14875 PF10431 C-terminal, D2-small domain, of ClpB protein CTI08_14875 PF07724 AAA domain (Cdc48 subfamily) CTI08_14890 PF02566 OsmC-like protein CTI08_14900 PF13545 Crp-like helix-turn-helix domain CTI08_14900 PF00027 Cyclic nucleotide-binding domain CTI08_14905 PF00248 Aldo/keto reductase family CTI08_14920 PF00709 Adenylosuccinate synthetase CTI08_14925 PF13393 Histidyl-tRNA synthetase CTI08_14930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CTI08_14930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTI08_14935 PF02272 DHHA1 domain CTI08_14935 PF01411 tRNA synthetases class II (A) CTI08_14935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTI08_14940 PF00589 Phage integrase family CTI08_14940 PF13356 Arm DNA-binding domain CTI08_14955 PF00717 Peptidase S24-like CTI08_14960 PF13438 Domain of unknown function (DUF4113) CTI08_14960 PF11799 impB/mucB/samB family C-terminal domain CTI08_14960 PF00817 impB/mucB/samB family CTI08_15105 PF07690 Major Facilitator Superfamily CTI08_15110 PF13533 Biotin-lipoyl like CTI08_15115 PF03061 Thioesterase superfamily CTI08_15120 PF00490 Delta-aminolevulinic acid dehydratase CTI08_15125 PF01266 FAD dependent oxidoreductase CTI08_15130 PF01370 NAD dependent epimerase/dehydratase family CTI08_15130 PF08338 Domain of unknown function (DUF1731) CTI08_15150 PF12320 Type 5 capsule protein repressor C-terminal domain CTI08_15150 PF00149 Calcineurin-like phosphoesterase CTI08_15160 PF01168 Alanine racemase, N-terminal domain CTI08_15165 PF00437 Type II/IV secretion system protein CTI08_15170 PF00437 Type II/IV secretion system protein CTI08_15175 PF01475 Ferric uptake regulator family CTI08_15180 PF04355 SmpA / OmlA family CTI08_15185 PF03658 RnfH family Ubiquitin CTI08_15200 PF01814 Hemerythrin HHE cation binding domain CTI08_15205 PF13230 Glutamine amidotransferases class-II CTI08_15215 PF00696 Amino acid kinase family CTI08_15220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTI08_15220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTI08_15220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTI08_15220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTI08_15225 PF00692 dUTPase CTI08_15230 PF00580 UvrD/REP helicase N-terminal domain CTI08_15230 PF13361 UvrD-like helicase C-terminal domain CTI08_15235 PF13488 Glycine zipper CTI08_15235 PF00691 OmpA family CTI08_15240 PF01553 Acyltransferase CTI08_15250 PF03775 Septum formation inhibitor MinC, C-terminal domain CTI08_15255 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CTI08_15260 PF03776 Septum formation topological specificity factor MinE CTI08_15275 PF01810 LysE type translocator CTI08_15280 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CTI08_15280 PF17854 FtsK alpha domain CTI08_15280 PF09397 Ftsk gamma domain CTI08_15280 PF01580 FtsK/SpoIIIE family CTI08_15285 PF07992 Pyridine nucleotide-disulphide oxidoreductase CTI08_15290 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CTI08_15295 PF04377 Arginine-tRNA-protein transferase, C terminus CTI08_15295 PF04376 Arginine-tRNA-protein transferase, N terminus CTI08_15300 PF00583 Acetyltransferase (GNAT) family CTI08_15315 PF00009 Elongation factor Tu GTP binding domain CTI08_15315 PF03144 Elongation factor Tu domain 2 CTI08_15315 PF03143 Elongation factor Tu C-terminal domain CTI08_15320 PF00679 Elongation factor G C-terminus CTI08_15320 PF14492 Elongation Factor G, domain II CTI08_15320 PF03144 Elongation factor Tu domain 2 CTI08_15320 PF03764 Elongation factor G, domain IV CTI08_15320 PF00009 Elongation factor Tu GTP binding domain CTI08_15325 PF00177 Ribosomal protein S7p/S5e CTI08_15330 PF00164 Ribosomal protein S12/S23 CTI08_15340 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_15340 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_15350 PF05726 Pirin C-terminal cupin domain CTI08_15350 PF02678 Pirin CTI08_15360 PF00795 Carbon-nitrogen hydrolase CTI08_15360 PF02540 NAD synthase CTI08_15375 PF00175 Oxidoreductase NAD-binding domain CTI08_15375 PF00111 2Fe-2S iron-sulfur cluster binding domain CTI08_15375 PF00970 Oxidoreductase FAD-binding domain CTI08_15380 PF00171 Aldehyde dehydrogenase family CTI08_15385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CTI08_15385 PF00355 Rieske [2Fe-2S] domain CTI08_15390 PF07859 alpha/beta hydrolase fold CTI08_15395 PF02028 BCCT, betaine/carnitine/choline family transporter CTI08_15400 PF00180 Isocitrate/isopropylmalate dehydrogenase CTI08_15405 PF03466 LysR substrate binding domain CTI08_15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_15425 PF00037 4Fe-4S binding domain CTI08_15430 PF01467 Cytidylyltransferase-like CTI08_15435 PF01668 SmpB protein CTI08_15440 PF03358 NADPH-dependent FMN reductase CTI08_15450 PF00849 RNA pseudouridylate synthase CTI08_15450 PF01479 S4 domain CTI08_15455 PF13525 Outer membrane lipoprotein CTI08_15460 PF01807 CHC2 zinc finger CTI08_15460 PF08275 DNA primase catalytic core, N-terminal domain CTI08_15460 PF08278 DNA primase DnaG DnaB-binding CTI08_15460 PF10410 DnaB-helicase binding domain of primase CTI08_15465 PF01488 Shikimate / quinate 5-dehydrogenase CTI08_15465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CTI08_15465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CTI08_15475 PF03550 Outer membrane lipoprotein LolB CTI08_15480 PF00288 GHMP kinases N terminal domain CTI08_15480 PF08544 GHMP kinases C terminal CTI08_15505 PF14572 Phosphoribosyl synthetase-associated domain CTI08_15505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CTI08_15510 PF01386 Ribosomal L25p family CTI08_15515 PF01195 Peptidyl-tRNA hydrolase CTI08_15520 PF02261 Aspartate decarboxylase CTI08_15535 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CTI08_15545 PF03070 TENA/THI-4/PQQC family CTI08_15545 PF08543 Phosphomethylpyrimidine kinase CTI08_15545 PF02581 Thiamine monophosphate synthase CTI08_15550 PF04972 BON domain CTI08_15550 PF01476 LysM domain CTI08_15555 PF00550 Phosphopantetheine attachment site CTI08_15565 PF00698 Acyl transferase domain CTI08_15570 PF01783 Ribosomal L32p protein family CTI08_15575 PF02620 Large ribosomal RNA subunit accumulation protein YceD CTI08_15580 PF04315 Elongation factor P hydroxylase CTI08_15585 PF01300 Telomere recombination CTI08_15590 PF02616 Segregation and condensation protein ScpA CTI08_15595 PF04079 Segregation and condensation complex subunit ScpB CTI08_15600 PF01479 S4 domain CTI08_15600 PF00849 RNA pseudouridylate synthase CTI08_15615 PF00155 Aminotransferase class I and II CTI08_15620 PF04055 Radical SAM superfamily CTI08_15620 PF06968 Biotin and Thiamin Synthesis associated domain CTI08_15620 PF00202 Aminotransferase class-III CTI08_15625 PF12697 Alpha/beta hydrolase family CTI08_15625 PF08241 Methyltransferase domain CTI08_15630 PF02358 Trehalose-phosphatase CTI08_15635 PF00982 Glycosyltransferase family 20 CTI08_15640 PF07690 Major Facilitator Superfamily CTI08_15645 PF00210 Ferritin-like domain CTI08_15650 PF03120 NAD-dependent DNA ligase OB-fold domain CTI08_15650 PF12826 Helix-hairpin-helix motif CTI08_15650 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CTI08_15650 PF00533 BRCA1 C Terminus (BRCT) domain CTI08_15650 PF01653 NAD-dependent DNA ligase adenylation domain CTI08_15660 PF06470 SMC proteins Flexible Hinge Domain CTI08_15660 PF02463 RecF/RecN/SMC N terminal domain CTI08_15670 PF01925 Sulfite exporter TauE/SafE CTI08_15680 PF03309 Type III pantothenate kinase CTI08_15685 PF02881 SRP54-type protein, helical bundle domain CTI08_15685 PF00448 SRP54-type protein, GTPase domain CTI08_15685 PF02978 Signal peptide binding domain CTI08_15695 PF01207 Dihydrouridine synthase (Dus) CTI08_15725 PF00692 dUTPase CTI08_15740 PF01048 Phosphorylase superfamily CTI08_15750 PF10609 NUBPL iron-transfer P-loop NTPase CTI08_15760 PF01588 Putative tRNA binding domain CTI08_15760 PF09334 tRNA synthetases class I (M) CTI08_15785 PF13533 Biotin-lipoyl like CTI08_15790 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_15805 PF05552 Conserved TM helix CTI08_15820 PF00175 Oxidoreductase NAD-binding domain CTI08_15820 PF00970 Oxidoreductase FAD-binding domain CTI08_15825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_15825 PF03466 LysR substrate binding domain CTI08_15830 PF00313 'Cold-shock' DNA-binding domain CTI08_15840 PF00361 Proton-conducting membrane transporter CTI08_15845 PF00361 Proton-conducting membrane transporter CTI08_15850 PF00361 Proton-conducting membrane transporter CTI08_15850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CTI08_15855 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CTI08_15860 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CTI08_15865 PF12838 4Fe-4S dicluster domain CTI08_15870 PF00146 NADH dehydrogenase CTI08_15875 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CTI08_15875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CTI08_15875 PF00384 Molybdopterin oxidoreductase CTI08_15880 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CTI08_15880 PF10531 SLBB domain CTI08_15880 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CTI08_15890 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CTI08_15890 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CTI08_15895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CTI08_15900 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CTI08_15905 PF00990 Diguanylate cyclase, GGDEF domain CTI08_15905 PF17151 Periplasmic sensor domain CTI08_15915 PF00512 His Kinase A (phospho-acceptor) domain CTI08_15915 PF00672 HAMP domain CTI08_15915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_15920 PF00072 Response regulator receiver domain CTI08_15920 PF00486 Transcriptional regulatory protein, C terminal CTI08_15930 PF00317 Ribonucleotide reductase, all-alpha domain CTI08_15930 PF02867 Ribonucleotide reductase, barrel domain CTI08_15930 PF03477 ATP cone domain CTI08_15940 PF00268 Ribonucleotide reductase, small chain CTI08_15950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_15950 PF00672 HAMP domain CTI08_15950 PF13756 Stimulus-sensing domain CTI08_15950 PF13755 Sensor N-terminal transmembrane domain CTI08_15950 PF00512 His Kinase A (phospho-acceptor) domain CTI08_16035 PF13360 PQQ-like domain CTI08_16035 PF01011 PQQ enzyme repeat CTI08_16055 PF02567 Phenazine biosynthesis-like protein CTI08_16085 PF01613 Flavin reductase like domain CTI08_16090 PF01717 Cobalamin-independent synthase, Catalytic domain CTI08_16090 PF08267 Cobalamin-independent synthase, N-terminal domain CTI08_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_16100 PF03466 LysR substrate binding domain CTI08_16105 PF01810 LysE type translocator CTI08_16115 PF12833 Helix-turn-helix domain CTI08_16115 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CTI08_16120 PF07687 Peptidase dimerisation domain CTI08_16120 PF01546 Peptidase family M20/M25/M40 CTI08_16130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_16130 PF03466 LysR substrate binding domain CTI08_16140 PF07690 Major Facilitator Superfamily CTI08_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_16150 PF03466 LysR substrate binding domain CTI08_16155 PF00890 FAD binding domain CTI08_16155 PF14537 Cytochrome c3 CTI08_16165 PF02515 CoA-transferase family III CTI08_16170 PF07690 Major Facilitator Superfamily CTI08_16175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_16175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_16175 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_16180 PF03466 LysR substrate binding domain CTI08_16185 PF00107 Zinc-binding dehydrogenase CTI08_16185 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_16190 PF00962 Adenosine/AMP deaminase CTI08_16215 PF02445 Quinolinate synthetase A protein CTI08_16220 PF01960 ArgJ family CTI08_16225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTI08_16225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CTI08_16230 PF00893 Small Multidrug Resistance protein CTI08_16240 PF05275 Copper resistance protein B precursor (CopB) CTI08_16245 PF07731 Multicopper oxidase CTI08_16245 PF00394 Multicopper oxidase CTI08_16245 PF07732 Multicopper oxidase CTI08_16260 PF00834 Ribulose-phosphate 3 epimerase family CTI08_16270 PF00756 Putative esterase CTI08_16280 PF04445 Putative SAM-dependent methyltransferase CTI08_16285 PF00814 Glycoprotease family CTI08_16290 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_16295 PF00293 NUDIX domain CTI08_16335 PF04715 Anthranilate synthase component I, N terminal region CTI08_16335 PF00425 chorismate binding enzyme CTI08_16340 PF00155 Aminotransferase class I and II CTI08_16345 PF00815 Histidinol dehydrogenase CTI08_16350 PF01634 ATP phosphoribosyltransferase CTI08_16355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CTI08_16360 PF01722 BolA-like protein CTI08_16365 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CTI08_16370 PF04552 Sigma-54, DNA binding domain CTI08_16370 PF00309 Sigma-54 factor, Activator interacting domain (AID) CTI08_16370 PF04963 Sigma-54 factor, core binding domain CTI08_16415 PF00795 Carbon-nitrogen hydrolase CTI08_16425 PF01047 MarR family CTI08_16430 PF02566 OsmC-like protein CTI08_16435 PF00437 Type II/IV secretion system protein CTI08_16455 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CTI08_16455 PF00476 DNA polymerase family A CTI08_16455 PF01612 3'-5' exonuclease CTI08_16455 PF01367 5'-3' exonuclease, C-terminal SAM fold CTI08_16460 PF02325 YGGT family CTI08_16465 PF03807 NADP oxidoreductase coenzyme F420-dependent CTI08_16465 PF14748 Pyrroline-5-carboxylate reductase dimerisation CTI08_16470 PF01171 PP-loop family CTI08_16470 PF09179 TilS substrate binding domain CTI08_16470 PF11734 TilS substrate C-terminal domain CTI08_16475 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CTI08_16480 PF02541 Ppx/GppA phosphatase family CTI08_16485 PF00085 Thioredoxin CTI08_16490 PF07497 Rho termination factor, RNA-binding domain CTI08_16490 PF07498 Rho termination factor, N-terminal domain CTI08_16490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTI08_16505 PF00216 Bacterial DNA-binding protein CTI08_16510 PF01588 Putative tRNA binding domain CTI08_16510 PF03484 tRNA synthetase B5 domain CTI08_16510 PF03483 B3/4 domain CTI08_16510 PF03147 Ferredoxin-fold anticodon binding domain CTI08_16510 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CTI08_16515 PF01409 tRNA synthetases class II core domain (F) CTI08_16515 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CTI08_16535 PF00453 Ribosomal protein L20 CTI08_16540 PF01632 Ribosomal protein L35 CTI08_16545 PF07690 Major Facilitator Superfamily CTI08_16550 PF09335 SNARE associated Golgi protein CTI08_16555 PF02798 Glutathione S-transferase, N-terminal domain CTI08_16555 PF00043 Glutathione S-transferase, C-terminal domain CTI08_16565 PF00707 Translation initiation factor IF-3, C-terminal domain CTI08_16565 PF05198 Translation initiation factor IF-3, N-terminal domain CTI08_16570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CTI08_16570 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CTI08_16570 PF03129 Anticodon binding domain CTI08_16570 PF02824 TGS domain CTI08_16575 PF00501 AMP-binding enzyme CTI08_16575 PF13193 AMP-binding enzyme C-terminal domain CTI08_16580 PF04751 Protein of unknown function (DUF615) CTI08_16585 PF00381 PTS HPr component phosphorylation site CTI08_16590 PF03668 P-loop ATPase protein family CTI08_16595 PF02569 Pantoate-beta-alanine ligase CTI08_16600 PF02548 Ketopantoate hydroxymethyltransferase CTI08_16605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CTI08_16610 PF12627 Probable RNA and SrmB- binding site of polymerase A CTI08_16610 PF12626 Polymerase A arginine-rich C-terminus CTI08_16610 PF01743 Poly A polymerase head domain CTI08_16620 PF03819 MazG nucleotide pyrophosphohydrolase domain CTI08_16630 PF00905 Penicillin binding protein transpeptidase domain CTI08_16645 PF02824 TGS domain CTI08_16645 PF13291 ACT domain CTI08_16645 PF04607 Region found in RelA / SpoT proteins CTI08_16650 PF05958 tRNA (Uracil-5-)-methyltransferase CTI08_16660 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_16665 PF00512 His Kinase A (phospho-acceptor) domain CTI08_16665 PF01627 Hpt domain CTI08_16665 PF00072 Response regulator receiver domain CTI08_16665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CTI08_16665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_16665 PF00672 HAMP domain CTI08_16670 PF00378 Enoyl-CoA hydratase/isomerase CTI08_16675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTI08_16675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTI08_16680 PF01261 Xylose isomerase-like TIM barrel CTI08_16690 PF00106 short chain dehydrogenase CTI08_16695 PF02233 NAD(P) transhydrogenase beta subunit CTI08_16700 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CTI08_16705 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CTI08_16705 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CTI08_16710 PF00892 EamA-like transporter family CTI08_16720 PF07690 Major Facilitator Superfamily CTI08_16725 PF01207 Dihydrouridine synthase (Dus) CTI08_16735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_16735 PF03466 LysR substrate binding domain CTI08_16745 PF00899 ThiF family CTI08_16755 PF00694 Aconitase C-terminal domain CTI08_16755 PF00330 Aconitase family (aconitate hydratase) CTI08_16760 PF01026 TatD related DNase CTI08_16775 PF03144 Elongation factor Tu domain 2 CTI08_16775 PF16658 Class II release factor RF3, C-terminal domain CTI08_16775 PF00009 Elongation factor Tu GTP binding domain CTI08_16800 PF00563 EAL domain CTI08_16800 PF00990 Diguanylate cyclase, GGDEF domain CTI08_16800 PF03707 Bacterial signalling protein N terminal repeat CTI08_16805 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CTI08_16805 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CTI08_16810 PF10369 Small subunit of acetolactate synthase CTI08_16815 PF00205 Thiamine pyrophosphate enzyme, central domain CTI08_16815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CTI08_16815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CTI08_16825 PF09334 tRNA synthetases class I (M) CTI08_16825 PF00133 tRNA synthetases class I (I, L, M and V) CTI08_16825 PF08264 Anticodon-binding domain of tRNA CTI08_16825 PF13603 Leucyl-tRNA synthetase, Domain 2 CTI08_16840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CTI08_16845 PF12704 MacB-like periplasmic core domain CTI08_16845 PF02687 FtsX-like permease family CTI08_16845 PF00005 ABC transporter CTI08_16850 PF02321 Outer membrane efflux protein CTI08_16865 PF00929 Exonuclease CTI08_16870 PF03193 RsgA GTPase CTI08_16880 PF00462 Glutaredoxin CTI08_16885 PF02556 Preprotein translocase subunit SecB CTI08_16900 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_16900 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_16915 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_16915 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_16925 PF04820 Tryptophan halogenase CTI08_16945 PF00221 Aromatic amino acid lyase CTI08_16960 PF00501 AMP-binding enzyme CTI08_16960 PF13193 AMP-binding enzyme C-terminal domain CTI08_16970 PF00550 Phosphopantetheine attachment site CTI08_16975 PF00550 Phosphopantetheine attachment site CTI08_16990 PF01926 50S ribosome-binding GTPase CTI08_16990 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CTI08_16995 PF13360 PQQ-like domain CTI08_17005 PF13393 Histidyl-tRNA synthetase CTI08_17005 PF03129 Anticodon binding domain CTI08_17010 PF04551 GcpE protein CTI08_17015 PF13464 Domain of unknown function (DUF4115) CTI08_17025 PF04055 Radical SAM superfamily CTI08_17030 PF00334 Nucleoside diphosphate kinase CTI08_17035 PF04384 Iron-sulphur cluster assembly CTI08_17040 PF01569 PAP2 superfamily CTI08_17045 PF13439 Glycosyltransferase Family 4 CTI08_17045 PF00534 Glycosyl transferases group 1 CTI08_17050 PF00595 PDZ domain CTI08_17050 PF03572 Peptidase family S41 CTI08_17050 PF17804 Tail specific protease N-terminal domain CTI08_17050 PF11818 C-terminal domain of tail specific protease (DUF3340) CTI08_17055 PF00933 Glycosyl hydrolase family 3 N terminal domain CTI08_17065 PF00561 alpha/beta hydrolase fold CTI08_17070 PF00171 Aldehyde dehydrogenase family CTI08_17075 PF00171 Aldehyde dehydrogenase family CTI08_17080 PF01202 Shikimate kinase CTI08_17085 PF02447 GntP family permease CTI08_17090 PF01081 KDPG and KHG aldolase CTI08_17095 PF00920 Dehydratase family CTI08_17100 PF00871 Acetokinase family CTI08_17105 PF01515 Phosphate acetyl/butaryl transferase CTI08_17105 PF07085 DRTGG domain CTI08_17110 PF05683 Fumarase C-terminus CTI08_17110 PF05681 Fumarate hydratase (Fumerase) CTI08_17125 PF07724 AAA domain (Cdc48 subfamily) CTI08_17125 PF10431 C-terminal, D2-small domain, of ClpB protein CTI08_17125 PF06689 ClpX C4-type zinc finger CTI08_17130 PF00574 Clp protease CTI08_17135 PF05698 Bacterial trigger factor protein (TF) C-terminus CTI08_17135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTI08_17135 PF05697 Bacterial trigger factor protein (TF) CTI08_17140 PF07715 TonB-dependent Receptor Plug Domain CTI08_17140 PF00593 TonB dependent receptor CTI08_17145 PF13640 2OG-Fe(II) oxygenase superfamily CTI08_17145 PF18331 PKHD-type hydroxylase C-terminal domain CTI08_17150 PF00682 HMGL-like CTI08_17150 PF08502 LeuA allosteric (dimerisation) domain CTI08_17155 PF00561 alpha/beta hydrolase fold CTI08_17160 PF07021 Methionine biosynthesis protein MetW CTI08_17160 PF00561 alpha/beta hydrolase fold CTI08_17170 PF01725 Ham1 family CTI08_17180 PF02416 mttA/Hcf106 family CTI08_17185 PF02416 mttA/Hcf106 family CTI08_17190 PF00902 Sec-independent protein translocase protein (TatC) CTI08_17210 PF01790 Prolipoprotein diacylglyceryl transferase CTI08_17225 PF00303 Thymidylate synthase CTI08_17235 PF00186 Dihydrofolate reductase CTI08_17245 PF01625 Peptide methionine sulfoxide reductase CTI08_17255 PF01618 MotA/TolQ/ExbB proton channel family CTI08_17265 PF01842 ACT domain CTI08_17265 PF00551 Formyl transferase CTI08_17275 PF00171 Aldehyde dehydrogenase family CTI08_17280 PF00830 Ribosomal L28 family CTI08_17285 PF00471 Ribosomal protein L33 CTI08_17290 PF00999 Sodium/hydrogen exchanger family CTI08_17290 PF02254 TrkA-N domain CTI08_17310 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CTI08_17315 PF00580 UvrD/REP helicase N-terminal domain CTI08_17315 PF13361 UvrD-like helicase C-terminal domain CTI08_17330 PF01131 DNA topoisomerase CTI08_17330 PF08272 Topoisomerase I zinc-ribbon-like CTI08_17330 PF01751 Toprim domain CTI08_17330 PF01396 Topoisomerase DNA binding C4 zinc finger CTI08_17340 PF01638 HxlR-like helix-turn-helix CTI08_17345 PF08240 Alcohol dehydrogenase GroES-like domain CTI08_17345 PF00107 Zinc-binding dehydrogenase CTI08_17360 PF01810 LysE type translocator CTI08_17365 PF03279 Bacterial lipid A biosynthesis acyltransferase CTI08_17375 PF00375 Sodium:dicarboxylate symporter family CTI08_17385 PF00905 Penicillin binding protein transpeptidase domain CTI08_17400 PF01118 Semialdehyde dehydrogenase, NAD binding domain CTI08_17400 PF02774 Semialdehyde dehydrogenase, dimerisation domain CTI08_17420 PF01416 tRNA pseudouridine synthase CTI08_17430 PF01176 Translation initiation factor 1A / IF-1 CTI08_17445 PF00180 Isocitrate/isopropylmalate dehydrogenase CTI08_17455 PF00694 Aconitase C-terminal domain CTI08_17460 PF00330 Aconitase family (aconitate hydratase) CTI08_17470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_17470 PF03466 LysR substrate binding domain CTI08_17490 PF00293 NUDIX domain CTI08_17495 PF01590 GAF domain CTI08_17495 PF02896 PEP-utilising enzyme, TIM barrel domain CTI08_17495 PF00391 PEP-utilising enzyme, mobile domain CTI08_17495 PF05524 PEP-utilising enzyme, N-terminal CTI08_17500 PF00141 Peroxidase CTI08_17505 PF12706 Beta-lactamase superfamily domain CTI08_17510 PF03466 LysR substrate binding domain CTI08_17510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_17520 PF02798 Glutathione S-transferase, N-terminal domain CTI08_17525 PF13280 WYL domain CTI08_17525 PF08279 HTH domain CTI08_17530 PF13419 Haloacid dehalogenase-like hydrolase CTI08_17535 PF01479 S4 domain CTI08_17535 PF00849 RNA pseudouridylate synthase CTI08_17545 PF10150 Ribonuclease E/G family CTI08_17545 PF12111 Polyribonucleotide phosphorylase C terminal CTI08_17545 PF00575 S1 RNA binding domain CTI08_17550 PF00501 AMP-binding enzyme CTI08_17550 PF13193 AMP-binding enzyme C-terminal domain CTI08_17565 PF03466 LysR substrate binding domain CTI08_17565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CTI08_17570 PF00106 short chain dehydrogenase CTI08_17575 PF04055 Radical SAM superfamily CTI08_17575 PF06969 HemN C-terminal domain CTI08_17585 PF01554 MatE CTI08_17590 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_17590 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTI08_17590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_17595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_17595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CTI08_17600 PF03109 ABC1 family CTI08_17605 PF01197 Ribosomal protein L31 CTI08_17620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CTI08_17640 PF03884 DNA gyrase inhibitor YacG CTI08_17645 PF00753 Metallo-beta-lactamase superfamily CTI08_17650 PF00762 Ferrochelatase CTI08_17660 PF01177 Asp/Glu/Hydantoin racemase CTI08_17675 PF01206 Sulfurtransferase TusA CTI08_17680 PF00571 CBS domain CTI08_17680 PF03471 Transporter associated domain CTI08_17685 PF00795 Carbon-nitrogen hydrolase CTI08_17690 PF01588 Putative tRNA binding domain CTI08_17700 PF07963 Prokaryotic N-terminal methylation motif CTI08_17700 PF08334 Type II secretion system (T2SS), protein G CTI08_17705 PF00482 Type II secretion system (T2SS), protein F CTI08_17710 PF00271 Helicase conserved C-terminal domain CTI08_17710 PF00270 DEAD/DEAH box helicase CTI08_17710 PF18074 Primosomal protein N C-terminal domain CTI08_17710 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CTI08_17710 PF17764 3′ DNA-binding domain (3′BD) CTI08_17715 PF02254 TrkA-N domain CTI08_17715 PF00999 Sodium/hydrogen exchanger family CTI08_17720 PF01430 Hsp33 protein CTI08_17730 PF00226 DnaJ domain CTI08_17730 PF01556 DnaJ C terminal domain CTI08_17740 PF01544 CorA-like Mg2+ transporter protein CTI08_17745 PF00013 KH domain CTI08_17745 PF01138 3' exoribonuclease family, domain 1 CTI08_17745 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CTI08_17745 PF03725 3' exoribonuclease family, domain 2 CTI08_17745 PF00575 S1 RNA binding domain CTI08_17750 PF00312 Ribosomal protein S15 CTI08_17760 PF13538 UvrD-like helicase C-terminal domain CTI08_17765 PF13361 UvrD-like helicase C-terminal domain CTI08_17765 PF00580 UvrD/REP helicase N-terminal domain CTI08_17765 PF12705 PD-(D/E)XK nuclease superfamily CTI08_17770 PF17946 RecC C-terminal domain CTI08_17780 PF03976 Polyphosphate kinase 2 (PPK2) CTI08_17790 PF01209 ubiE/COQ5 methyltransferase family CTI08_17800 PF03109 ABC1 family CTI08_17805 PF01494 FAD binding domain CTI08_17810 PF01502 Phosphoribosyl-AMP cyclohydrolase CTI08_17825 PF13244 Domain of unknown function (DUF4040) CTI08_17825 PF00361 Proton-conducting membrane transporter CTI08_17825 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CTI08_17825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CTI08_17830 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CTI08_17835 PF00361 Proton-conducting membrane transporter CTI08_17845 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CTI08_17855 PF02033 Ribosome-binding factor A CTI08_17860 PF11987 Translation-initiation factor 2 CTI08_17860 PF00009 Elongation factor Tu GTP binding domain CTI08_17860 PF04760 Translation initiation factor IF-2, N-terminal region CTI08_17860 PF08364 Bacterial translation initiation factor IF-2 associated region CTI08_17865 PF00575 S1 RNA binding domain CTI08_17865 PF08529 NusA N-terminal domain CTI08_17865 PF13184 NusA-like KH domain CTI08_17870 PF17384 RimP C-terminal SH3 domain CTI08_17870 PF02576 RimP N-terminal domain CTI08_17890 PF03840 Preprotein translocase SecG subunit CTI08_17895 PF00121 Triosephosphate isomerase CTI08_17900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CTI08_17900 PF00437 Type II/IV secretion system protein CTI08_17905 PF00482 Type II secretion system (T2SS), protein F CTI08_17910 PF06750 Bacterial Peptidase A24 N-terminal domain CTI08_17910 PF01478 Type IV leader peptidase family CTI08_17915 PF01121 Dephospho-CoA kinase CTI08_17925 PF00588 SpoU rRNA Methylase family CTI08_17925 PF08032 RNA 2'-O ribose methyltransferase substrate binding CTI08_17930 PF06865 Pyrimidine/purine nucleoside phosphorylase CTI08_17940 PF02463 RecF/RecN/SMC N terminal domain CTI08_17945 PF02622 Uncharacterized ACR, COG1678 CTI08_17950 PF03652 Holliday junction resolvase CTI08_17955 PF13533 Biotin-lipoyl like CTI08_17980 PF02805 Metal binding domain of Ada CTI08_17980 PF12833 Helix-turn-helix domain CTI08_17980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CTI08_17980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CTI08_17985 PF01066 CDP-alcohol phosphatidyltransferase CTI08_17995 PF08459 UvrC Helix-hairpin-helix N-terminal CTI08_17995 PF01541 GIY-YIG catalytic domain CTI08_17995 PF02151 UvrB/uvrC motif CTI08_18020 PF00378 Enoyl-CoA hydratase/isomerase CTI08_18020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CTI08_18020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CTI08_18025 PF02803 Thiolase, C-terminal domain CTI08_18025 PF00108 Thiolase, N-terminal domain CTI08_18045 PF09278 MerR, DNA binding CTI08_18045 PF00376 MerR family regulatory protein CTI08_18055 PF01323 DSBA-like thioredoxin domain CTI08_18070 PF00183 Hsp90 protein CTI08_18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_18085 PF03553 Na+/H+ antiporter family CTI08_18085 PF13726 Na+-H+ antiporter family CTI08_18090 PF00561 alpha/beta hydrolase fold CTI08_18110 PF00623 RNA polymerase Rpb1, domain 2 CTI08_18110 PF04983 RNA polymerase Rpb1, domain 3 CTI08_18110 PF04997 RNA polymerase Rpb1, domain 1 CTI08_18110 PF04998 RNA polymerase Rpb1, domain 5 CTI08_18110 PF05000 RNA polymerase Rpb1, domain 4 CTI08_18115 PF04565 RNA polymerase Rpb2, domain 3 CTI08_18115 PF10385 RNA polymerase beta subunit external 1 domain CTI08_18115 PF04561 RNA polymerase Rpb2, domain 2 CTI08_18115 PF04560 RNA polymerase Rpb2, domain 7 CTI08_18115 PF00562 RNA polymerase Rpb2, domain 6 CTI08_18115 PF04563 RNA polymerase beta subunit CTI08_18120 PF16320 Ribosomal protein L7/L12 dimerisation domain CTI08_18120 PF00542 Ribosomal protein L7/L12 C-terminal domain CTI08_18125 PF00466 Ribosomal protein L10 CTI08_18130 PF00687 Ribosomal protein L1p/L10e family CTI08_18135 PF00298 Ribosomal protein L11, RNA binding domain CTI08_18135 PF03946 Ribosomal protein L11, N-terminal domain CTI08_18140 PF00467 KOW motif CTI08_18140 PF02357 Transcription termination factor nusG CTI08_18145 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CTI08_18155 PF03144 Elongation factor Tu domain 2 CTI08_18155 PF00009 Elongation factor Tu GTP binding domain CTI08_18155 PF03143 Elongation factor Tu C-terminal domain CTI08_18180 PF00425 chorismate binding enzyme CTI08_18180 PF04715 Anthranilate synthase component I, N terminal region CTI08_18185 PF13419 Haloacid dehalogenase-like hydrolase CTI08_18190 PF12401 Protein of unknown function (DUF2662) CTI08_18190 PF00498 FHA domain CTI08_18195 PF03958 Bacterial type II/III secretion system short domain CTI08_18195 PF00263 Bacterial type II and III secretion system protein CTI08_18210 PF00816 H-NS histone family CTI08_18235 PF03900 Porphobilinogen deaminase, C-terminal domain CTI08_18235 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CTI08_18240 PF04397 LytTr DNA-binding domain CTI08_18240 PF00072 Response regulator receiver domain CTI08_18245 PF07694 5TMR of 5TMR-LYT CTI08_18245 PF06580 Histidine kinase CTI08_18245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_18250 PF00206 Lyase CTI08_18250 PF14698 Argininosuccinate lyase C-terminal CTI08_18255 PF04362 Bacterial Fe(2+) trafficking CTI08_18260 PF01895 PhoU domain CTI08_18265 PF02321 Outer membrane efflux protein CTI08_18270 PF00892 EamA-like transporter family CTI08_18285 PF01964 Radical SAM ThiC family CTI08_18285 PF13667 ThiC-associated domain CTI08_18290 PF00293 NUDIX domain CTI08_18295 PF00149 Calcineurin-like phosphoesterase CTI08_18300 PF01258 Prokaryotic dksA/traR C4-type zinc finger CTI08_18305 PF00749 tRNA synthetases class I (E and Q), catalytic domain CTI08_18310 PF01098 Cell cycle protein CTI08_18315 PF02875 Mur ligase family, glutamate ligase domain CTI08_18315 PF08245 Mur ligase middle domain CTI08_18325 PF07664 Ferrous iron transport protein B C terminus CTI08_18325 PF02421 Ferrous iron transport protein B CTI08_18325 PF07670 Nucleoside recognition CTI08_18335 PF02899 Phage integrase, N-terminal SAM-like domain CTI08_18335 PF00589 Phage integrase family CTI08_18340 PF10411 Disulfide bond isomerase protein N-terminus CTI08_18340 PF13098 Thioredoxin-like domain CTI08_18345 PF03447 Homoserine dehydrogenase, NAD binding domain CTI08_18345 PF00742 Homoserine dehydrogenase CTI08_18345 PF01842 ACT domain CTI08_18350 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_18355 PF00768 D-alanyl-D-alanine carboxypeptidase CTI08_18360 PF00196 Bacterial regulatory proteins, luxR family CTI08_18360 PF00072 Response regulator receiver domain CTI08_18365 PF00512 His Kinase A (phospho-acceptor) domain CTI08_18365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CTI08_18370 PF02954 Bacterial regulatory protein, Fis family CTI08_18370 PF00072 Response regulator receiver domain CTI08_18370 PF00158 Sigma-54 interaction domain CTI08_18375 PF00595 PDZ domain CTI08_18375 PF03572 Peptidase family S41 CTI08_18380 PF01676 Metalloenzyme superfamily CTI08_18380 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CTI08_18385 PF03739 Lipopolysaccharide export system permease LptF/LptG CTI08_18395 PF00883 Cytosol aminopeptidase family, catalytic domain CTI08_18395 PF02789 Cytosol aminopeptidase family, N-terminal domain CTI08_18415 PF00677 Lumazine binding domain CTI08_18425 PF01872 RibD C-terminal domain CTI08_18425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CTI08_18430 PF03477 ATP cone domain CTI08_18435 PF00909 Ammonium Transporter Family CTI08_18440 PF00543 Nitrogen regulatory protein P-II CTI08_18450 PF13335 Magnesium chelatase, subunit ChlI C-terminal CTI08_18450 PF01078 Magnesium chelatase, subunit ChlI CTI08_18460 PF01636 Phosphotransferase enzyme family CTI08_18470 PF01636 Phosphotransferase enzyme family CTI08_18480 PF01609 Transposase DDE domain CTI08_18495 PF01609 Transposase DDE domain CTI08_18505 PF01636 Phosphotransferase enzyme family CTI08_18510 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CTI08_18535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTI08_18535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTI08_18535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTI08_18535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTI08_18540 PF00809 Pterin binding enzyme CTI08_18560 PF00665 Integrase core domain CTI08_18585 PF00589 Phage integrase family CTI08_18585 PF02899 Phage integrase, N-terminal SAM-like domain CTI08_18615 PF00916 Sulfate permease family CTI08_18615 PF01740 STAS domain CTI08_18620 PF00582 Universal stress protein family CTI08_18640 PF00665 Integrase core domain CTI08_18650 PF01078 Magnesium chelatase, subunit ChlI CTI08_18650 PF13335 Magnesium chelatase, subunit ChlI C-terminal CTI08_18655 PF00392 Bacterial regulatory proteins, gntR family CTI08_18655 PF00155 Aminotransferase class I and II CTI08_18665 PF00701 Dihydrodipicolinate synthetase family CTI08_18675 PF03573 outer membrane porin, OprD family CTI08_18680 PF00719 Inorganic pyrophosphatase CTI08_18695 PF13193 AMP-binding enzyme C-terminal domain CTI08_18695 PF00501 AMP-binding enzyme CTI08_18700 PF00521 DNA gyrase/topoisomerase IV, subunit A CTI08_18700 PF03989 DNA gyrase C-terminal domain, beta-propeller CTI08_18705 PF07690 Major Facilitator Superfamily CTI08_18710 PF03458 UPF0126 domain CTI08_18715 PF02810 SEC-C motif CTI08_18720 PF03471 Transporter associated domain CTI08_18720 PF03741 Integral membrane protein TerC family CTI08_18725 PF03641 Possible lysine decarboxylase CTI08_18730 PF07690 Major Facilitator Superfamily CTI08_18740 PF00817 impB/mucB/samB family CTI08_18740 PF11798 IMS family HHH motif CTI08_18740 PF11799 impB/mucB/samB family C-terminal domain CTI08_18755 PF08497 Radical SAM N-terminal CTI08_18755 PF11842 Domain of unknown function (DUF3362) CTI08_18755 PF04055 Radical SAM superfamily CTI08_18775 PF03358 NADPH-dependent FMN reductase CTI08_18785 PF00291 Pyridoxal-phosphate dependent enzyme CTI08_18845 PF01327 Polypeptide deformylase CTI08_18855 PF02481 DNA recombination-mediator protein A CTI08_18855 PF17782 DprA winged helix domain CTI08_18860 PF01300 Telomere recombination CTI08_18865 PF00892 EamA-like transporter family CTI08_18870 PF00440 Bacterial regulatory proteins, tetR family CTI08_18875 PF07690 Major Facilitator Superfamily CTI08_18885 PF00255 Glutathione peroxidase CTI08_18895 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CTI08_18900 PF02874 ATP synthase alpha/beta family, beta-barrel domain CTI08_18900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTI08_18905 PF00231 ATP synthase CTI08_18910 PF00306 ATP synthase alpha/beta chain, C terminal domain CTI08_18910 PF02874 ATP synthase alpha/beta family, beta-barrel domain CTI08_18910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CTI08_18915 PF00213 ATP synthase delta (OSCP) subunit CTI08_18920 PF00430 ATP synthase B/B' CF(0) CTI08_18925 PF00137 ATP synthase subunit C CTI08_18930 PF00119 ATP synthase A chain CTI08_18950 PF00005 ABC transporter CTI08_18955 PF00950 ABC 3 transport family CTI08_18960 PF01810 LysE type translocator CTI08_18965 PF04261 Dyp-type peroxidase family CTI08_18975 PF03949 Malic enzyme, NAD binding domain CTI08_18975 PF00390 Malic enzyme, N-terminal domain CTI08_18980 PF00750 tRNA synthetases class I (R) CTI08_18980 PF05746 DALR anticodon binding domain CTI08_18980 PF03485 Arginyl tRNA synthetase N terminal domain CTI08_19000 PF05726 Pirin C-terminal cupin domain CTI08_19000 PF02678 Pirin CTI08_19010 PF03551 Transcriptional regulator PadR-like family CTI08_19015 PF01909 Nucleotidyltransferase domain CTI08_19015 PF13427 Domain of unknown function (DUF4111) CTI08_19020 PF00117 Glutamine amidotransferase class-I CTI08_19020 PF02540 NAD synthase CTI08_19020 PF00958 GMP synthase C terminal domain CTI08_19025 PF04286 Protein of unknown function (DUF445) CTI08_19030 PF07681 DoxX CTI08_19035 PF09335 SNARE associated Golgi protein CTI08_19050 PF13614 AAA domain CTI08_19060 PF01722 BolA-like protein CTI08_19075 PF01648 4'-phosphopantetheinyl transferase superfamily CTI08_19080 PF12697 Alpha/beta hydrolase family CTI08_19095 PF13193 AMP-binding enzyme C-terminal domain CTI08_19095 PF00501 AMP-binding enzyme CTI08_19095 PF00550 Phosphopantetheine attachment site CTI08_19095 PF00975 Thioesterase domain CTI08_19095 PF00668 Condensation domain CTI08_19100 PF00975 Thioesterase domain CTI08_19100 PF14765 Polyketide synthase dehydratase CTI08_19100 PF00550 Phosphopantetheine attachment site CTI08_19100 PF08242 Methyltransferase domain CTI08_19100 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_19100 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_19100 PF16197 Ketoacyl-synthetase C-terminal extension CTI08_19105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_19105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_19105 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_19110 PF00501 AMP-binding enzyme CTI08_19115 PF03472 Autoinducer binding domain CTI08_19115 PF00196 Bacterial regulatory proteins, luxR family CTI08_19125 PF00765 Autoinducer synthase CTI08_19130 PF00083 Sugar (and other) transporter CTI08_19130 PF07690 Major Facilitator Superfamily CTI08_19135 PF00378 Enoyl-CoA hydratase/isomerase CTI08_19140 PF00378 Enoyl-CoA hydratase/isomerase CTI08_19145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CTI08_19145 PF02770 Acyl-CoA dehydrogenase, middle domain CTI08_19145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CTI08_19150 PF00501 AMP-binding enzyme CTI08_19150 PF13193 AMP-binding enzyme C-terminal domain CTI08_19155 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CTI08_19155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CTI08_19160 PF00171 Aldehyde dehydrogenase family CTI08_19170 PF00324 Amino acid permease CTI08_19175 PF00324 Amino acid permease CTI08_19180 PF01042 Endoribonuclease L-PSP CTI08_19185 PF01168 Alanine racemase, N-terminal domain CTI08_19185 PF00842 Alanine racemase, C-terminal domain CTI08_19190 PF01266 FAD dependent oxidoreductase CTI08_19195 PF01037 Lrp/AsnC ligand binding domain CTI08_19205 PF07715 TonB-dependent Receptor Plug Domain CTI08_19205 PF00593 TonB dependent receptor CTI08_19220 PF00849 RNA pseudouridylate synthase CTI08_19235 PF00109 Beta-ketoacyl synthase, N-terminal domain CTI08_19235 PF02801 Beta-ketoacyl synthase, C-terminal domain CTI08_19250 PF00293 NUDIX domain CTI08_19270 PF00694 Aconitase C-terminal domain CTI08_19270 PF00330 Aconitase family (aconitate hydratase) CTI08_19275 PF00285 Citrate synthase, C-terminal domain CTI08_19285 PF07729 FCD domain CTI08_19285 PF00392 Bacterial regulatory proteins, gntR family CTI08_19295 PF00155 Aminotransferase class I and II CTI08_19300 PF01565 FAD binding domain CTI08_19300 PF09330 D-lactate dehydrogenase, membrane binding CTI08_19305 PF01070 FMN-dependent dehydrogenase CTI08_19310 PF00392 Bacterial regulatory proteins, gntR family CTI08_19310 PF07729 FCD domain CTI08_19315 PF02652 L-lactate permease CTI08_19320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CTI08_19320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CTI08_19320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CTI08_19320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CTI08_19325 PF16363 GDP-mannose 4,6 dehydratase CTI08_19330 PF00342 Phosphoglucose isomerase CTI08_19335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CTI08_19335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CTI08_19335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CTI08_19340 PF00483 Nucleotidyl transferase CTI08_19345 PF02397 Bacterial sugar transferase CTI08_19350 PF00535 Glycosyl transferase family 2 CTI08_19355 PF00534 Glycosyl transferases group 1 CTI08_19370 PF00534 Glycosyl transferases group 1 CTI08_19370 PF13439 Glycosyltransferase Family 4 CTI08_19375 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_19375 PF14602 Hexapeptide repeat of succinyl-transferase CTI08_19375 PF12464 Maltose acetyltransferase CTI08_19385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CTI08_19390 PF00132 Bacterial transferase hexapeptide (six repeats) CTI08_19395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CTI08_19395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CTI08_19405 PF02563 Polysaccharide biosynthesis/export protein CTI08_19405 PF10531 SLBB domain CTI08_19405 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CTI08_19410 PF01451 Low molecular weight phosphotyrosine protein phosphatase CTI08_19415 PF13807 G-rich domain on putative tyrosine kinase CTI08_19415 PF02706 Chain length determinant protein CTI08_19415 PF13614 AAA domain CTI08_19420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTI08_19420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTI08_19425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTI08_19425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CTI08_19430 PF03023 Lipid II flippase MurJ CTI08_19435 PF01510 N-acetylmuramoyl-L-alanine amidase CTI08_19440 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CTI08_19440 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CTI08_19450 PF04185 Phosphoesterase family CTI08_19450 PF05506 Domain of unknown function (DUF756) CTI08_19460 PF03725 3' exoribonuclease family, domain 2 CTI08_19460 PF01138 3' exoribonuclease family, domain 1 CTI08_19465 PF00487 Fatty acid desaturase CTI08_19470 PF00175 Oxidoreductase NAD-binding domain CTI08_19475 PF00440 Bacterial regulatory proteins, tetR family CTI08_19480 PF08360 QacR-like protein, C-terminal region CTI08_19480 PF00440 Bacterial regulatory proteins, tetR family CTI08_19485 PF01323 DSBA-like thioredoxin domain CTI08_19495 PF13419 Haloacid dehalogenase-like hydrolase CTI08_19500 PF00106 short chain dehydrogenase CTI08_19515 PF00583 Acetyltransferase (GNAT) family CTI08_19515 PF00696 Amino acid kinase family CTI08_19520 PF09084 NMT1/THI5 like CTI08_19525 PF09084 NMT1/THI5 like CTI08_19530 PF00296 Luciferase-like monooxygenase CTI08_19535 PF00528 Binding-protein-dependent transport system inner membrane component CTI08_19540 PF00005 ABC transporter CTI08_19545 PF00440 Bacterial regulatory proteins, tetR family CTI08_19545 PF08362 YcdC-like protein, C-terminal region CTI08_19550 PF01048 Phosphorylase superfamily CTI08_19560 PF01687 Riboflavin kinase CTI08_19560 PF06574 FAD synthetase CTI08_19565 PF08264 Anticodon-binding domain of tRNA CTI08_19565 PF00133 tRNA synthetases class I (I, L, M and V) CTI08_19565 PF06827 Zinc finger found in FPG and IleRS CTI08_19570 PF01252 Signal peptidase (SPase) II CTI08_19575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CTI08_19615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CTI08_19620 PF07859 alpha/beta hydrolase fold CTI08_19650 PF01025 GrpE CTI08_19655 PF00012 Hsp70 protein CTI08_19675 PF13406 Transglycosylase SLT domain CTI08_19680 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CTI08_19680 PF02222 ATP-grasp domain CTI08_19685 PF00731 AIR carboxylase CTI08_19700 PF08245 Mur ligase middle domain CTI08_19700 PF01225 Mur ligase family, catalytic domain CTI08_19700 PF02875 Mur ligase family, glutamate ligase domain CTI08_19710 PF01569 PAP2 superfamily CTI08_19715 PF03741 Integral membrane protein TerC family CTI08_19730 PF03738 Glutathionylspermidine synthase preATP-grasp CTI08_19735 PF00355 Rieske [2Fe-2S] domain CTI08_19740 PF01979 Amidohydrolase family CTI08_19745 PF00156 Phosphoribosyl transferase domain CTI08_19755 PF10411 Disulfide bond isomerase protein N-terminus CTI08_19755 PF13098 Thioredoxin-like domain CTI08_19760 PF16916 Dimerisation domain of Zinc Transporter CTI08_19760 PF01545 Cation efflux family CTI08_19765 PF02583 Metal-sensitive transcriptional repressor CTI08_19770 PF01926 50S ribosome-binding GTPase CTI08_19770 PF10396 GTP-binding protein TrmE N-terminus CTI08_19770 PF12631 MnmE helical domain CTI08_19775 PF02096 60Kd inner membrane protein CTI08_19775 PF14849 YidC periplasmic domain CTI08_19780 PF01809 Putative membrane protein insertion efficiency factor CTI08_19785 PF00825 Ribonuclease P CTI08_19790 PF00468 Ribosomal protein L34 CTI08_19795 PF01051 Initiator Replication protein CTI08_19825 PF07715 TonB-dependent Receptor Plug Domain CTI08_19825 PF00593 TonB dependent receptor CTI08_19845 PF02796 Helix-turn-helix domain of resolvase CTI08_19845 PF00239 Resolvase, N terminal domain CTI08_19850 PF01126 Heme oxygenase CTI08_19855 PF00593 TonB dependent receptor CTI08_19855 PF07715 TonB-dependent Receptor Plug Domain CTI08_19860 PF04304 Protein of unknown function (DUF454) CTI08_19925 PF00565 Staphylococcal nuclease homologue CTI08_19930 PF00816 H-NS histone family CTI08_19995 PF13614 AAA domain CTI08_20000 PF02195 ParB-like nuclease domain CTI08_20000 PF17762 HTH domain found in ParB protein CTI08_20020 PF05816 Toxic anion resistance protein (TelA) CTI08_20085 PF00905 Penicillin binding protein transpeptidase domain CTI08_20150 PF00684 DnaJ central domain CTI08_20150 PF00226 DnaJ domain CTI08_20150 PF01556 DnaJ C terminal domain CTI08_20185 PF07057 DNA helicase TraI CTI08_20185 PF18272 single-stranded DNA binding TraI N-terminal subdomain CTI08_20185 PF18340 DNA relaxase TraI 2B/2B-like domain CTI08_20185 PF08751 TrwC relaxase CTI08_20205 PF00665 Integrase core domain CTI08_20205 PF13936 Helix-turn-helix domain CTI08_20220 PF13936 Helix-turn-helix domain CTI08_20220 PF00665 Integrase core domain CTI08_20225 PF01636 Phosphotransferase enzyme family CTI08_20230 PF00665 Integrase core domain CTI08_20230 PF13936 Helix-turn-helix domain CTI08_20245 PF00239 Resolvase, N terminal domain CTI08_20245 PF02796 Helix-turn-helix domain of resolvase CTI08_20260 PF01464 Transglycosylase SLT domain CTI08_20295 PF10411 Disulfide bond isomerase protein N-terminus CTI08_20295 PF13098 Thioredoxin-like domain CTI08_20330 PF06834 TraU protein CTI08_20340 PF06986 Type-1V conjugative transfer system mating pair stabilisation CTI08_20355 PF06122 Conjugative relaxosome accessory transposon protein CTI08_20375 PF11798 IMS family HHH motif CTI08_20375 PF11799 impB/mucB/samB family C-terminal domain CTI08_20375 PF13438 Domain of unknown function (DUF4113) CTI08_20375 PF00817 impB/mucB/samB family