CTI08_00005 SM00382 ATPases associated with a variety of cellular activities CTI08_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CTI08_00010 SM00480 DNA polymerase III beta subunit CTI08_00020 SM00387 Histidine kinase-like ATPases CTI08_00020 SM00433 TopoisomeraseII CTI08_00035 SM00382 ATPases associated with a variety of cellular activities CTI08_00185 SM00271 DnaJ molecular chaperone homology domain CTI08_00230 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_00235 SM00829 Enoylreductase CTI08_00255 SM00478 endonuclease III CTI08_00255 SM00525 CTI08_00255 CTI08_00285 SM00382 ATPases associated with a variety of cellular activities CTI08_00315 SM01130 CTI08_00315 CTI08_00345 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_00375 SM00833 Cobalamin synthesis protein cobW C-terminal domain CTI08_00385 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_00385 SM00866 CTI08_00385 CTI08_00465 SM00342 helix_turn_helix, arabinose operon control protein CTI08_00495 SM00823 Phosphopantetheine attachment site CTI08_00515 SM01006 Siderophore biosynthesis protein domain CTI08_00555 SM00382 ATPases associated with a variety of cellular activities CTI08_00565 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CTI08_00620 SM00382 ATPases associated with a variety of cellular activities CTI08_00700 SM01060 CTI08_00700 CTI08_00705 SM00248 ankyrin repeats CTI08_00715 SM00450 Rhodanese Homology Domain CTI08_00740 SM00387 Histidine kinase-like ATPases CTI08_00740 SM00388 His Kinase A (phosphoacceptor) domain CTI08_00745 SM00448 cheY-homologous receiver domain CTI08_00745 SM00862 Transcriptional regulatory protein, C terminal CTI08_00800 SM00257 Lysin motif CTI08_00830 SM00387 Histidine kinase-like ATPases CTI08_00830 SM00433 TopoisomeraseII CTI08_00960 SM00842 Cell division protein FtsA CTI08_00965 SM00864 Tubulin/FtsZ family, GTPase domain CTI08_00965 SM00865 Tubulin/FtsZ family, C-terminal domain CTI08_01010 SM00849 Metallo-beta-lactamase superfamily CTI08_01020 SM00116 Domain in cystathionine beta-synthase and other proteins. CTI08_01020 SM01240 CTI08_01020 CTI08_01050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CTI08_01090 SM00344 helix_turn_helix ASNC type CTI08_01105 SM00421 helix_turn_helix, Lux Regulon CTI08_01105 SM00448 cheY-homologous receiver domain CTI08_01115 SM00387 Histidine kinase-like ATPases CTI08_01115 SM00388 His Kinase A (phosphoacceptor) domain CTI08_01115 SM00448 cheY-homologous receiver domain CTI08_01170 SM00829 Enoylreductase CTI08_01215 SM00530 Helix-turn-helix XRE-family like proteins CTI08_01225 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_01310 SM00342 helix_turn_helix, arabinose operon control protein CTI08_01375 SM00342 helix_turn_helix, arabinose operon control protein CTI08_01395 SM00477 DNA/RNA non-specific endonuclease CTI08_01395 SM00892 DNA/RNA non-specific endonuclease CTI08_01415 SM00342 helix_turn_helix, arabinose operon control protein CTI08_01435 SM00357 Cold shock protein domain CTI08_01450 SM00530 Helix-turn-helix XRE-family like proteins CTI08_01460 SM00474 3'-5' exonuclease CTI08_01510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CTI08_01510 SM00387 Histidine kinase-like ATPases CTI08_01510 SM00388 His Kinase A (phosphoacceptor) domain CTI08_01515 SM00448 cheY-homologous receiver domain CTI08_01515 SM00862 Transcriptional regulatory protein, C terminal CTI08_01520 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_01520 SM00732 Likely ribonuclease with RNase H fold. CTI08_01550 SM00382 ATPases associated with a variety of cellular activities CTI08_01555 SM00671 Sel1-like repeats. CTI08_01690 SM00842 Cell division protein FtsA CTI08_01710 SM00965 Secretin and TonB N terminus short domain CTI08_01790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CTI08_01790 SM00954 Region found in RelA / SpoT proteins CTI08_01795 SM01409 CTI08_01795 CTI08_01800 SM00072 Guanylate kinase homologues. CTI08_01985 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CTI08_02085 SM00116 Domain in cystathionine beta-synthase and other proteins. CTI08_02125 SM00861 Transketolase, pyrimidine binding domain CTI08_02135 SM00487 DEAD-like helicases superfamily CTI08_02135 SM00490 helicase superfamily c-terminal domain CTI08_02140 SM00382 ATPases associated with a variety of cellular activities CTI08_02185 SM00487 DEAD-like helicases superfamily CTI08_02185 SM00490 helicase superfamily c-terminal domain CTI08_02200 SM00563 Phosphate acyltransferases CTI08_02250 SM01403 CTI08_02250 CTI08_02270 SM01382 CTI08_02270 CTI08_02270 SM01383 CTI08_02270 CTI08_02285 SM00322 K homology RNA-binding domain CTI08_02305 SM01374 CTI08_02305 CTI08_02310 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CTI08_02375 SM00363 S4 RNA-binding domain CTI08_02375 SM01390 CTI08_02375 CTI08_02380 SM00662 RNA polymerases D CTI08_02440 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_02440 SM00955 CTI08_02440 CTI08_02490 SM00342 helix_turn_helix, arabinose operon control protein CTI08_02540 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_02570 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CTI08_02660 SM00878 Biotin carboxylase C-terminal domain CTI08_02695 SM00650 Ribosomal RNA adenine dimethylases CTI08_02725 SM00563 Phosphate acyltransferases CTI08_02730 SM00155 Phospholipase D. Active site motifs. CTI08_02745 SM00267 diguanylate cyclase CTI08_02830 SM00450 Rhodanese Homology Domain CTI08_02855 SM00481 DNA polymerase alpha chain like domain CTI08_02885 SM01323 CTI08_02885 CTI08_02935 SM00387 Histidine kinase-like ATPases CTI08_02935 SM00388 His Kinase A (phosphoacceptor) domain CTI08_03060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CTI08_03060 SM00387 Histidine kinase-like ATPases CTI08_03060 SM00388 His Kinase A (phosphoacceptor) domain CTI08_03065 SM00448 cheY-homologous receiver domain CTI08_03065 SM00862 Transcriptional regulatory protein, C terminal CTI08_03125 SM00342 helix_turn_helix, arabinose operon control protein CTI08_03155 SM00849 Metallo-beta-lactamase superfamily CTI08_03165 SM00957 SecA DEAD-like domain CTI08_03165 SM00958 SecA preprotein cross-linking domain CTI08_03215 SM00342 helix_turn_helix, arabinose operon control protein CTI08_03230 SM00564 beta-propeller repeat CTI08_03295 SM00838 Elongation factor G C-terminus CTI08_03315 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CTI08_03315 SM01232 CTI08_03315 CTI08_03340 SM00671 Sel1-like repeats. CTI08_03400 SM00448 cheY-homologous receiver domain CTI08_03405 SM00448 cheY-homologous receiver domain CTI08_03410 SM00260 Two component signalling adaptor domain CTI08_03415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CTI08_03420 SM00073 Histidine Phosphotransfer domain CTI08_03420 SM00260 Two component signalling adaptor domain CTI08_03420 SM00387 Histidine kinase-like ATPases CTI08_03420 SM00448 cheY-homologous receiver domain CTI08_03420 SM01231 CTI08_03420 CTI08_03570 SM00845 GatB domain CTI08_03605 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_03640 SM00342 helix_turn_helix, arabinose operon control protein CTI08_03660 SM00342 helix_turn_helix, arabinose operon control protein CTI08_03665 SM00829 Enoylreductase CTI08_03700 SM00244 prohibitin homologues CTI08_03715 SM00563 Phosphate acyltransferases CTI08_03735 SM00448 cheY-homologous receiver domain CTI08_03735 SM00862 Transcriptional regulatory protein, C terminal CTI08_03740 SM00387 Histidine kinase-like ATPases CTI08_03740 SM00388 His Kinase A (phosphoacceptor) domain CTI08_03790 SM00822 CTI08_03790 CTI08_03825 SM00014 Acid phosphatase homologues CTI08_03935 SM00450 Rhodanese Homology Domain CTI08_03980 SM00861 Transketolase, pyrimidine binding domain CTI08_04000 SM00881 CoA binding domain CTI08_04035 SM00854 Bacterial capsule synthesis protein PGA_cap CTI08_04065 SM00851 MGS-like domain CTI08_04065 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CTI08_04070 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CTI08_04090 SM01103 CTI08_04090 CTI08_04100 SM00382 ATPases associated with a variety of cellular activities CTI08_04175 SM00046 Diacylglycerol kinase catalytic domain (presumed) CTI08_04190 SM00883 Chaperonin 10 Kd subunit CTI08_04205 SM00849 Metallo-beta-lactamase superfamily CTI08_04340 SM00978 CTI08_04340 CTI08_04345 SM00382 ATPases associated with a variety of cellular activities CTI08_04380 SM00893 Electron transfer flavoprotein domain CTI08_04385 SM00893 Electron transfer flavoprotein domain CTI08_04390 SM00434 DNA Topoisomerase IV CTI08_04460 SM00382 ATPases associated with a variety of cellular activities CTI08_04465 SM00849 Metallo-beta-lactamase superfamily CTI08_04580 SM00382 ATPases associated with a variety of cellular activities CTI08_04585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CTI08_04590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CTI08_04595 SM01211 CTI08_04595 CTI08_04665 SM00382 ATPases associated with a variety of cellular activities CTI08_04715 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CTI08_04725 SM00838 Elongation factor G C-terminus CTI08_04740 SM00358 Double-stranded RNA binding motif CTI08_04740 SM00535 Ribonuclease III family CTI08_04810 SM00267 diguanylate cyclase CTI08_04820 SM00487 DEAD-like helicases superfamily CTI08_04820 SM00490 helicase superfamily c-terminal domain CTI08_04835 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTI08_04855 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CTI08_04955 SM01329 CTI08_04955 CTI08_05010 SM00880 CTI08_05010 CTI08_05010 SM01118 CTI08_05010 CTI08_05040 SM00487 DEAD-like helicases superfamily CTI08_05040 SM00490 helicase superfamily c-terminal domain CTI08_05095 SM00344 helix_turn_helix ASNC type CTI08_05125 SM00382 ATPases associated with a variety of cellular activities CTI08_05170 SM00936 Penicillin-binding protein 5, C-terminal domain CTI08_05190 SM00257 Lysin motif CTI08_05225 SM00052 Putative diguanylate phosphodiesterase CTI08_05240 SM00841 Elongation factor P, C-terminal CTI08_05240 SM01185 CTI08_05240 CTI08_05380 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CTI08_05385 SM00829 Enoylreductase CTI08_05590 SM00530 Helix-turn-helix XRE-family like proteins CTI08_05615 SM00382 ATPases associated with a variety of cellular activities CTI08_05645 SM00411 bacterial (prokaryotic) histone like domain CTI08_05710 SM00382 ATPases associated with a variety of cellular activities CTI08_05755 SM00382 ATPases associated with a variety of cellular activities CTI08_05760 SM00382 ATPases associated with a variety of cellular activities CTI08_05830 SM01092 CO dehydrogenase flavoprotein C-terminal domain CTI08_05835 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CTI08_05845 SM00463 Small MutS-related domain CTI08_05955 SM00530 Helix-turn-helix XRE-family like proteins CTI08_06275 SM01011 Aminopeptidase P, N-terminal domain CTI08_06295 SM00422 helix_turn_helix, mercury resistance CTI08_06350 SM00479 CTI08_06350 CTI08_06355 SM00257 Lysin motif CTI08_06375 SM00382 ATPases associated with a variety of cellular activities CTI08_06395 SM00479 CTI08_06395 CTI08_06405 SM00267 diguanylate cyclase CTI08_06620 SM00530 Helix-turn-helix XRE-family like proteins CTI08_06820 SM00060 Fibronectin type 3 domain CTI08_06865 SM00382 ATPases associated with a variety of cellular activities CTI08_06910 SM01130 CTI08_06910 CTI08_07005 SM01322 CTI08_07005 CTI08_07045 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_07065 SM00822 CTI08_07065 CTI08_07135 SM00342 helix_turn_helix, arabinose operon control protein CTI08_07165 SM00822 CTI08_07165 CTI08_07180 SM00861 Transketolase, pyrimidine binding domain CTI08_07185 SM01018 B12 binding domain CTI08_07245 SM00947 Carbonic anhydrase CTI08_07255 SM00382 ATPases associated with a variety of cellular activities CTI08_07365 SM01091 Transporter associated domain CTI08_07410 SM00988 UreE urease accessory protein, N-terminal domain CTI08_07460 SM00478 endonuclease III CTI08_07470 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CTI08_07490 SM00382 ATPases associated with a variety of cellular activities CTI08_07490 SM00464 Found in ATP-dependent protease La (LON) CTI08_07585 SM00530 Helix-turn-helix XRE-family like proteins CTI08_07605 SM00382 ATPases associated with a variety of cellular activities CTI08_07760 SM00287 Bacterial SH3 domain homologues CTI08_07795 SM00530 Helix-turn-helix XRE-family like proteins CTI08_07850 SM00530 Helix-turn-helix XRE-family like proteins CTI08_07890 SM00507 HNH nucleases CTI08_08025 SM00287 Bacterial SH3 domain homologues CTI08_08060 SM00530 Helix-turn-helix XRE-family like proteins CTI08_08135 SM01230 CTI08_08135 CTI08_08190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CTI08_08200 SM00919 Malic enzyme, NAD binding domain CTI08_08200 SM01274 CTI08_08200 CTI08_08205 SM00052 Putative diguanylate phosphodiesterase CTI08_08205 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CTI08_08205 SM00091 PAS domain CTI08_08205 SM00267 diguanylate cyclase CTI08_08220 SM00996 S-adenosyl-L-homocysteine hydrolase CTI08_08220 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CTI08_08240 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_08285 SM00342 helix_turn_helix, arabinose operon control protein CTI08_08335 SM00382 ATPases associated with a variety of cellular activities CTI08_08350 SM00479 CTI08_08350 CTI08_08390 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_08405 SM00382 ATPases associated with a variety of cellular activities CTI08_08425 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_08450 SM00382 ATPases associated with a variety of cellular activities CTI08_08460 SM00448 cheY-homologous receiver domain CTI08_08460 SM00862 Transcriptional regulatory protein, C terminal CTI08_08465 SM00387 Histidine kinase-like ATPases CTI08_08465 SM00388 His Kinase A (phosphoacceptor) domain CTI08_08525 SM00830 Chorismate mutase type II CTI08_08590 SM00357 Cold shock protein domain CTI08_08595 SM00487 DEAD-like helicases superfamily CTI08_08595 SM00490 helicase superfamily c-terminal domain CTI08_08615 SM00855 Phosphoglycerate mutase family CTI08_08695 SM00220 Serine/Threonine protein kinases, catalytic domain CTI08_08780 SM01034 Sensors of blue-light using FAD CTI08_08795 SM00342 helix_turn_helix, arabinose operon control protein CTI08_08815 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_08815 SM00895 CTI08_08815 CTI08_08830 SM00972 Spore Coat Protein U domain CTI08_08855 SM00972 Spore Coat Protein U domain CTI08_08960 SM00849 Metallo-beta-lactamase superfamily CTI08_08970 SM00382 ATPases associated with a variety of cellular activities CTI08_08970 SM00930 CTI08_08970 CTI08_08980 SM01209 CTI08_08980 CTI08_08980 SM01210 CTI08_08980 CTI08_08985 SM00798 AICARFT/IMPCHase bienzyme CTI08_08985 SM00851 MGS-like domain CTI08_09010 SM01228 CTI08_09010 CTI08_09030 SM00460 Transglutaminase/protease-like homologues CTI08_09040 SM01005 Alanine racemase, C-terminal domain CTI08_09160 SM00937 CTI08_09160 CTI08_09175 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_09180 SM00342 helix_turn_helix, arabinose operon control protein CTI08_09185 SM00822 CTI08_09185 CTI08_09200 SM00903 Flavin reductase like domain CTI08_09215 SM00905 Dihydroneopterin aldolase CTI08_09240 SM00387 Histidine kinase-like ATPases CTI08_09240 SM00388 His Kinase A (phosphoacceptor) domain CTI08_09245 SM00448 cheY-homologous receiver domain CTI08_09245 SM00862 Transcriptional regulatory protein, C terminal CTI08_09250 SM01230 CTI08_09250 CTI08_09335 SM00363 S4 RNA-binding domain CTI08_09360 SM00853 MutL C terminal dimerisation domain CTI08_09360 SM01340 CTI08_09360 CTI08_09430 SM00862 Transcriptional regulatory protein, C terminal CTI08_09445 SM00382 ATPases associated with a variety of cellular activities CTI08_09455 SM00342 helix_turn_helix, arabinose operon control protein CTI08_09455 SM00871 Bacterial transcription activator, effector binding domain CTI08_09495 SM00830 Chorismate mutase type II CTI08_09500 SM00344 helix_turn_helix ASNC type CTI08_09575 SM00382 ATPases associated with a variety of cellular activities CTI08_09600 SM00831 Cation transporter/ATPase, N-terminus CTI08_09615 SM00344 helix_turn_helix ASNC type CTI08_09645 SM00822 CTI08_09645 CTI08_09670 SM00382 ATPases associated with a variety of cellular activities CTI08_09695 SM00226 Low molecular weight phosphatase family CTI08_09730 SM01236 CTI08_09730 CTI08_09745 SM00878 Biotin carboxylase C-terminal domain CTI08_09770 SM00448 cheY-homologous receiver domain CTI08_09770 SM01012 CTI08_09770 CTI08_09790 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CTI08_09800 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CTI08_09805 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_09820 SM00852 Probable molybdopterin binding domain CTI08_09825 SM00852 Probable molybdopterin binding domain CTI08_09835 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_09925 SM00382 ATPases associated with a variety of cellular activities CTI08_09925 SM00448 cheY-homologous receiver domain CTI08_09930 SM00091 PAS domain CTI08_09930 SM00387 Histidine kinase-like ATPases CTI08_09930 SM00388 His Kinase A (phosphoacceptor) domain CTI08_09935 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_09965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CTI08_09975 SM00935 Outer membrane protein (OmpH-like) CTI08_10010 SM00382 ATPases associated with a variety of cellular activities CTI08_10015 SM00363 S4 RNA-binding domain CTI08_10045 SM00344 helix_turn_helix ASNC type CTI08_10095 SM00052 Putative diguanylate phosphodiesterase CTI08_10095 SM00091 PAS domain CTI08_10095 SM00267 diguanylate cyclase CTI08_10105 SM00347 helix_turn_helix multiple antibiotic resistance protein CTI08_10180 SM00116 Domain in cystathionine beta-synthase and other proteins. CTI08_10205 SM00382 ATPases associated with a variety of cellular activities CTI08_10205 SM00962 SRP54-type protein, GTPase domain CTI08_10205 SM00963 SRP54-type protein, helical bundle domain CTI08_10275 SM01264 CTI08_10275 CTI08_10315 SM00859 Semialdehyde dehydrogenase, NAD binding domain CTI08_10330 SM00382 ATPases associated with a variety of cellular activities CTI08_10330 SM01086 C-terminal, D2-small domain, of ClpB protein CTI08_10395 SM01192 CTI08_10395 CTI08_10395 SM01193 CTI08_10395 CTI08_10415 SM00882 Coenzyme A transferase CTI08_10420 SM00882 Coenzyme A transferase CTI08_10430 SM00998 Adenylosuccinate lyase C-terminus CTI08_10465 SM00710 Parallel beta-helix repeats CTI08_10475 SM00564 beta-propeller repeat CTI08_10495 SM00849 Metallo-beta-lactamase superfamily CTI08_10500 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_10520 SM00855 Phosphoglycerate mutase family CTI08_10540 SM00347 helix_turn_helix multiple antibiotic resistance protein CTI08_10585 SM00903 Flavin reductase like domain CTI08_10590 SM00342 helix_turn_helix, arabinose operon control protein CTI08_10625 SM00882 Coenzyme A transferase CTI08_10660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_10660 SM00895 CTI08_10660 CTI08_10695 SM00855 Phosphoglycerate mutase family CTI08_10710 SM00091 PAS domain CTI08_10710 SM00382 ATPases associated with a variety of cellular activities CTI08_10730 SM00829 Enoylreductase CTI08_10750 SM01060 CTI08_10750 CTI08_10775 SM00347 helix_turn_helix multiple antibiotic resistance protein CTI08_10795 SM00422 helix_turn_helix, mercury resistance CTI08_10875 SM00912 haemagglutination activity domain CTI08_10905 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_10905 SM00866 CTI08_10905 CTI08_10935 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_11020 SM00342 helix_turn_helix, arabinose operon control protein CTI08_11035 SM00829 Enoylreductase CTI08_11050 SM00382 ATPases associated with a variety of cellular activities CTI08_11060 SM00342 helix_turn_helix, arabinose operon control protein CTI08_11070 SM01400 CTI08_11070 CTI08_11155 SM00421 helix_turn_helix, Lux Regulon CTI08_11210 SM00530 Helix-turn-helix XRE-family like proteins CTI08_11245 SM00822 CTI08_11245 CTI08_11250 SM00822 CTI08_11250 CTI08_11260 SM00342 helix_turn_helix, arabinose operon control protein CTI08_11275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CTI08_11275 SM00387 Histidine kinase-like ATPases CTI08_11275 SM00388 His Kinase A (phosphoacceptor) domain CTI08_11280 SM00448 cheY-homologous receiver domain CTI08_11280 SM00862 Transcriptional regulatory protein, C terminal CTI08_11370 SM00829 Enoylreductase CTI08_11395 SM00155 Phospholipase D. Active site motifs. CTI08_11420 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_11470 SM00382 ATPases associated with a variety of cellular activities CTI08_11505 SM00342 helix_turn_helix, arabinose operon control protein CTI08_11515 SM00903 Flavin reductase like domain CTI08_11540 SM00342 helix_turn_helix, arabinose operon control protein CTI08_11565 SM00882 Coenzyme A transferase CTI08_11570 SM00882 Coenzyme A transferase CTI08_11625 SM00567 E-Z type HEAT repeats CTI08_11630 SM00382 ATPases associated with a variety of cellular activities CTI08_11655 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_11655 SM00866 CTI08_11655 CTI08_11675 SM00342 helix_turn_helix, arabinose operon control protein CTI08_11700 SM00849 Metallo-beta-lactamase superfamily CTI08_11705 SM00382 ATPases associated with a variety of cellular activities CTI08_11715 SM00829 Enoylreductase CTI08_11735 SM00861 Transketolase, pyrimidine binding domain CTI08_11745 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_11760 SM00267 diguanylate cyclase CTI08_11785 SM00382 ATPases associated with a variety of cellular activities CTI08_11815 SM00341 Helicase and RNase D C-terminal CTI08_11815 SM00474 3'-5' exonuclease CTI08_11820 SM00493 CTI08_11820 CTI08_11870 SM01324 CTI08_11870 CTI08_11910 SM00382 ATPases associated with a variety of cellular activities CTI08_11970 SM00855 Phosphoglycerate mutase family CTI08_11995 SM01006 Siderophore biosynthesis protein domain CTI08_12105 SM00342 helix_turn_helix, arabinose operon control protein CTI08_12115 SM00411 bacterial (prokaryotic) histone like domain CTI08_12150 SM00271 DnaJ molecular chaperone homology domain CTI08_12165 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain CTI08_12175 SM00487 DEAD-like helicases superfamily CTI08_12175 SM00490 helicase superfamily c-terminal domain CTI08_12175 SM00982 CTI08_12175 CTI08_12175 SM01058 CarD-like/TRCF domain CTI08_12230 SM00382 ATPases associated with a variety of cellular activities CTI08_12440 SM00507 HNH nucleases CTI08_12500 SM00382 ATPases associated with a variety of cellular activities CTI08_12530 SM00530 Helix-turn-helix XRE-family like proteins CTI08_12565 SM00342 helix_turn_helix, arabinose operon control protein CTI08_12580 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CTI08_12590 SM00411 bacterial (prokaryotic) histone like domain CTI08_12595 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_12620 SM00986 Uracil DNA glycosylase superfamily CTI08_12620 SM00987 UreE urease accessory protein, C-terminal domain CTI08_12680 SM00382 ATPases associated with a variety of cellular activities CTI08_12695 SM00470 ParB-like nuclease domain CTI08_12755 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CTI08_12765 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CTI08_12785 SM00382 ATPases associated with a variety of cellular activities CTI08_12795 SM00342 helix_turn_helix, arabinose operon control protein CTI08_12815 SM00344 helix_turn_helix ASNC type CTI08_12850 SM00867 YceI-like domain CTI08_12860 SM00861 Transketolase, pyrimidine binding domain CTI08_12895 SM00530 Helix-turn-helix XRE-family like proteins CTI08_12915 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_12915 SM00876 Biotin and Thiamin Synthesis associated domain CTI08_13000 SM01236 CTI08_13000 CTI08_13010 SM00563 Phosphate acyltransferases CTI08_13020 SM00344 helix_turn_helix ASNC type CTI08_13030 SM00382 ATPases associated with a variety of cellular activities CTI08_13045 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_13080 SM00382 ATPases associated with a variety of cellular activities CTI08_13080 SM00930 CTI08_13080 CTI08_13100 SM00100 Cyclic nucleotide-monophosphate binding domain CTI08_13100 SM00419 helix_turn_helix, cAMP Regulatory protein CTI08_13135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CTI08_13150 SM00342 helix_turn_helix, arabinose operon control protein CTI08_13175 SM00870 CTI08_13175 CTI08_13180 SM00481 DNA polymerase alpha chain like domain CTI08_13230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CTI08_13260 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_13260 SM00895 CTI08_13260 CTI08_13285 SM00382 ATPases associated with a variety of cellular activities CTI08_13290 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_13345 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_13365 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CTI08_13415 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_13450 SM00822 CTI08_13450 CTI08_13455 SM00450 Rhodanese Homology Domain CTI08_13490 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_13495 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_13500 SM00382 ATPases associated with a variety of cellular activities CTI08_13525 SM00421 helix_turn_helix, Lux Regulon CTI08_13525 SM00448 cheY-homologous receiver domain CTI08_13530 SM00387 Histidine kinase-like ATPases CTI08_13530 SM00388 His Kinase A (phosphoacceptor) domain CTI08_13530 SM00448 cheY-homologous receiver domain CTI08_13540 SM00344 helix_turn_helix ASNC type CTI08_13560 SM00384 DNA binding domain with preference for A/T rich regions CTI08_13575 SM01060 CTI08_13575 CTI08_13580 SM01236 CTI08_13580 CTI08_13660 SM00878 Biotin carboxylase C-terminal domain CTI08_13705 SM00882 Coenzyme A transferase CTI08_13710 SM00882 Coenzyme A transferase CTI08_13745 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_13765 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_13805 SM00382 ATPases associated with a variety of cellular activities CTI08_13815 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_13815 SM00866 CTI08_13815 CTI08_13825 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_13875 SM00903 Flavin reductase like domain CTI08_13890 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_13890 SM00895 CTI08_13890 CTI08_13905 SM01060 CTI08_13905 CTI08_14045 SM00342 helix_turn_helix, arabinose operon control protein CTI08_14070 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_14070 SM00895 CTI08_14070 CTI08_14080 SM01130 CTI08_14080 CTI08_14095 SM00422 helix_turn_helix, mercury resistance CTI08_14130 SM00248 ankyrin repeats CTI08_14165 SM00382 ATPases associated with a variety of cellular activities CTI08_14165 SM01086 C-terminal, D2-small domain, of ClpB protein CTI08_14245 SM00382 ATPases associated with a variety of cellular activities CTI08_14285 SM00796 Allophanate hydrolase subunit 1 CTI08_14285 SM00797 Allophanate hydrolase subunit 2 CTI08_14285 SM00878 Biotin carboxylase C-terminal domain CTI08_14300 SM00829 Enoylreductase CTI08_14330 SM00671 Sel1-like repeats. CTI08_14340 SM00878 Biotin carboxylase C-terminal domain CTI08_14345 SM00796 Allophanate hydrolase subunit 1 CTI08_14345 SM00797 Allophanate hydrolase subunit 2 CTI08_14430 SM00422 helix_turn_helix, mercury resistance CTI08_14465 SM00052 Putative diguanylate phosphodiesterase CTI08_14475 SM00344 helix_turn_helix ASNC type CTI08_14480 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CTI08_14480 SM00534 ATPase domain of DNA mismatch repair MUTS family CTI08_14525 SM00382 ATPases associated with a variety of cellular activities CTI08_14540 SM00382 ATPases associated with a variety of cellular activities CTI08_14560 SM00116 Domain in cystathionine beta-synthase and other proteins. CTI08_14565 SM00840 CTI08_14565 CTI08_14640 SM00357 Cold shock protein domain CTI08_14665 SM00530 Helix-turn-helix XRE-family like proteins CTI08_14720 SM00422 helix_turn_helix, mercury resistance CTI08_14780 SM00382 ATPases associated with a variety of cellular activities CTI08_14780 SM00487 DEAD-like helicases superfamily CTI08_14780 SM00490 helicase superfamily c-terminal domain CTI08_14780 SM00847 Helicase associated domain (HA2) Add an annotation CTI08_14860 SM00981 CTI08_14860 CTI08_14875 SM00382 ATPases associated with a variety of cellular activities CTI08_14875 SM01086 C-terminal, D2-small domain, of ClpB protein CTI08_14900 SM00100 Cyclic nucleotide-monophosphate binding domain CTI08_14900 SM00419 helix_turn_helix, cAMP Regulatory protein CTI08_14920 SM00788 Adenylosuccinate synthetase CTI08_14930 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CTI08_14935 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CTI08_14990 SM01040 BRO family, N-terminal domain CTI08_15120 SM01004 Delta-aminolevulinic acid dehydratase CTI08_15165 SM00382 ATPases associated with a variety of cellular activities CTI08_15240 SM00563 Phosphate acyltransferases CTI08_15280 SM00843 CTI08_15280 CTI08_15320 SM00838 Elongation factor G C-terminus CTI08_15320 SM00889 Elongation factor G, domain IV CTI08_15340 SM00825 Beta-ketoacyl synthase CTI08_15400 SM01329 CTI08_15400 CTI08_15450 SM00363 S4 RNA-binding domain CTI08_15460 SM00400 zinc finger CTI08_15460 SM00493 CTI08_15460 CTI08_15470 SM00028 Tetratricopeptide repeats CTI08_15505 SM01400 CTI08_15505 CTI08_15550 SM00257 Lysin motif CTI08_15560 SM00822 CTI08_15560 CTI08_15565 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CTI08_15600 SM00363 S4 RNA-binding domain CTI08_15650 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CTI08_15650 SM00292 breast cancer carboxy-terminal domain CTI08_15650 SM00532 Ligase N family CTI08_15655 SM00771 ZipA, C-terminal domain (FtsZ-binding) CTI08_15665 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_15685 SM00382 ATPases associated with a variety of cellular activities CTI08_15685 SM00962 SRP54-type protein, GTPase domain CTI08_15685 SM00963 SRP54-type protein, helical bundle domain CTI08_15830 SM00357 Cold shock protein domain CTI08_15875 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CTI08_15875 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CTI08_15880 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CTI08_15905 SM00267 diguanylate cyclase CTI08_15915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CTI08_15915 SM00387 Histidine kinase-like ATPases CTI08_15915 SM00388 His Kinase A (phosphoacceptor) domain CTI08_15920 SM00448 cheY-homologous receiver domain CTI08_15920 SM00862 Transcriptional regulatory protein, C terminal CTI08_15950 SM00387 Histidine kinase-like ATPases CTI08_16035 SM00564 beta-propeller repeat CTI08_16085 SM00903 Flavin reductase like domain CTI08_16115 SM00342 helix_turn_helix, arabinose operon control protein CTI08_16405 SM00331 Sigma factor PP2C-like phosphatases CTI08_16425 SM00347 helix_turn_helix multiple antibiotic resistance protein CTI08_16435 SM00382 ATPases associated with a variety of cellular activities CTI08_16455 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CTI08_16455 SM00474 3'-5' exonuclease CTI08_16455 SM00475 5'-3' exonuclease CTI08_16455 SM00482 DNA polymerase A domain CTI08_16470 SM00977 TilS substrate C-terminal domain CTI08_16490 SM00357 Cold shock protein domain CTI08_16490 SM00382 ATPases associated with a variety of cellular activities CTI08_16490 SM00959 Rho termination factor, N-terminal domain CTI08_16505 SM00411 bacterial (prokaryotic) histone like domain CTI08_16510 SM00873 B3/4 domain CTI08_16510 SM00874 tRNA synthetase B5 domain CTI08_16510 SM00896 Ferredoxin-fold anticodon binding domain CTI08_16570 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CTI08_16615 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CTI08_16645 SM00954 Region found in RelA / SpoT proteins CTI08_16665 SM00073 Histidine Phosphotransfer domain CTI08_16665 SM00387 Histidine kinase-like ATPases CTI08_16665 SM00388 His Kinase A (phosphoacceptor) domain CTI08_16665 SM00448 cheY-homologous receiver domain CTI08_16705 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CTI08_16705 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CTI08_16780 SM01236 CTI08_16780 CTI08_16800 SM00052 Putative diguanylate phosphodiesterase CTI08_16800 SM00267 diguanylate cyclase CTI08_16845 SM00382 ATPases associated with a variety of cellular activities CTI08_16865 SM00479 CTI08_16865 CTI08_16875 SM00450 Rhodanese Homology Domain CTI08_16900 SM00825 Beta-ketoacyl synthase CTI08_16905 SM00822 CTI08_16905 CTI08_16915 SM00825 Beta-ketoacyl synthase CTI08_16980 SM00563 Phosphate acyltransferases CTI08_16995 SM00564 beta-propeller repeat CTI08_17020 SM00028 Tetratricopeptide repeats CTI08_17030 SM00562 CTI08_17030 CTI08_17040 SM00014 Acid phosphatase homologues CTI08_17050 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CTI08_17050 SM00245 tail specific protease CTI08_17125 SM00382 ATPases associated with a variety of cellular activities CTI08_17125 SM00994 ClpX C4-type zinc finger CTI08_17125 SM01086 C-terminal, D2-small domain, of ClpB protein CTI08_17145 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CTI08_17150 SM00917 LeuA allosteric (dimerisation) domain CTI08_17165 SM00671 Sel1-like repeats. CTI08_17310 SM00360 RNA recognition motif CTI08_17330 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CTI08_17330 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CTI08_17330 SM00493 CTI08_17330 CTI08_17345 SM00829 Enoylreductase CTI08_17355 SM00382 ATPases associated with a variety of cellular activities CTI08_17400 SM00859 Semialdehyde dehydrogenase, NAD binding domain CTI08_17415 SM00870 CTI08_17415 CTI08_17425 SM00342 helix_turn_helix, arabinose operon control protein CTI08_17430 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_17445 SM01329 CTI08_17445 CTI08_17495 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CTI08_17535 SM00363 S4 RNA-binding domain CTI08_17545 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_17575 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_17645 SM00849 Metallo-beta-lactamase superfamily CTI08_17680 SM00116 Domain in cystathionine beta-synthase and other proteins. CTI08_17680 SM01091 Transporter associated domain CTI08_17710 SM00487 DEAD-like helicases superfamily CTI08_17710 SM00490 helicase superfamily c-terminal domain CTI08_17730 SM00271 DnaJ molecular chaperone homology domain CTI08_17745 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_17745 SM00322 K homology RNA-binding domain CTI08_17750 SM01387 CTI08_17750 CTI08_17760 SM00382 ATPases associated with a variety of cellular activities CTI08_17865 SM00316 Ribosomal protein S1-like RNA-binding domain CTI08_17925 SM00967 RNA 2'-O ribose methyltransferase substrate binding CTI08_17950 SM00732 Likely ribonuclease with RNase H fold. CTI08_17970 SM00346 helix_turn_helix isocitrate lyase regulation CTI08_17980 SM00342 helix_turn_helix, arabinose operon control protein CTI08_17995 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CTI08_17995 SM00465 GIY-YIG type nucleases (URI domain) CTI08_18045 SM00422 helix_turn_helix, mercury resistance CTI08_18070 SM00387 Histidine kinase-like ATPases CTI08_18110 SM00663 RNA polymerase I subunit A N-terminus CTI08_18135 SM00649 Ribosomal protein L11/L12 CTI08_18140 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CTI08_18140 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CTI08_18190 SM00240 Forkhead associated domain CTI08_18200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CTI08_18210 SM00528 Domain in histone-like proteins of HNS family CTI08_18240 SM00448 cheY-homologous receiver domain CTI08_18240 SM00850 LytTr DNA-binding domain CTI08_18330 SM00899 CTI08_18330 CTI08_18360 SM00421 helix_turn_helix, Lux Regulon CTI08_18360 SM00448 cheY-homologous receiver domain CTI08_18365 SM00387 Histidine kinase-like ATPases CTI08_18365 SM00388 His Kinase A (phosphoacceptor) domain CTI08_18370 SM00382 ATPases associated with a variety of cellular activities CTI08_18370 SM00448 cheY-homologous receiver domain CTI08_18375 SM00245 tail specific protease CTI08_18440 SM00938 Nitrogen regulatory protein P-II CTI08_18635 SM00382 ATPases associated with a variety of cellular activities CTI08_18655 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_18660 SM01007 Class II Aldolase and Adducin N-terminal domain CTI08_18665 SM01130 CTI08_18665 CTI08_18700 SM00434 DNA Topoisomerase IV CTI08_18720 SM01091 Transporter associated domain CTI08_18735 SM00641 Glycosyl hydrolases family 25 CTI08_18755 SM00729 Elongator protein 3, MiaB family, Radical SAM CTI08_18765 SM00422 helix_turn_helix, mercury resistance CTI08_18880 SM00342 helix_turn_helix, arabinose operon control protein CTI08_18900 SM00382 ATPases associated with a variety of cellular activities CTI08_18950 SM00382 ATPases associated with a variety of cellular activities CTI08_18975 SM00919 Malic enzyme, NAD binding domain CTI08_18975 SM01274 CTI08_18975 CTI08_18980 SM00836 DALR anticodon binding domain CTI08_18980 SM01016 Arginyl tRNA synthetase N terminal dom CTI08_19095 SM00823 Phosphopantetheine attachment site CTI08_19095 SM00824 Thioesterase CTI08_19100 SM00823 Phosphopantetheine attachment site CTI08_19100 SM01294 CTI08_19100 CTI08_19115 SM00421 helix_turn_helix, Lux Regulon CTI08_19185 SM01005 Alanine racemase, C-terminal domain CTI08_19195 SM00344 helix_turn_helix ASNC type CTI08_19235 SM00825 Beta-ketoacyl synthase CTI08_19285 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_19285 SM00895 CTI08_19285 CTI08_19310 SM00345 helix_turn_helix gluconate operon transcriptional repressor CTI08_19310 SM00895 CTI08_19310 CTI08_19335 SM00984 UDP binding domain CTI08_19410 SM00226 Low molecular weight phosphatase family CTI08_19435 SM00644 CTI08_19435 CTI08_19520 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_19525 SM00062 Bacterial periplasmic substrate-binding proteins CTI08_19540 SM00382 ATPases associated with a variety of cellular activities CTI08_19560 SM00904 Riboflavin kinase CTI08_19585 SM00248 ankyrin repeats CTI08_19640 SM00849 Metallo-beta-lactamase superfamily CTI08_19660 SM00235 Zinc-dependent metalloprotease CTI08_19665 SM00235 Zinc-dependent metalloprotease CTI08_19685 SM01001 AIR carboxylase CTI08_19710 SM00014 Acid phosphatase homologues CTI08_19780 SM01234 CTI08_19780 CTI08_19845 SM00857 Resolvase, N terminal domain CTI08_19925 SM00318 Staphylococcal nuclease homologues CTI08_19930 SM00528 Domain in histone-like proteins of HNS family CTI08_20000 SM00470 ParB-like nuclease domain CTI08_20105 SM00530 Helix-turn-helix XRE-family like proteins CTI08_20245 SM00857 Resolvase, N terminal domain