locus-tag	class	description
AB987_0002	COG1309	transcriptional regulator
AB987_0003	COG1960	acyl-CoA dehydrogenase activity
AB987_0004	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AB987_0005	COG1024	Enoyl-CoA hydratase
AB987_0008	COG0583	DNA-binding transcription factor activity
AB987_0011	COG1280	lysine exporter protein (LysE YggA)
AB987_0013	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AB987_0014	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AB987_0017	COG3842	ATPase activity
AB987_0018	COG1840	ABC-type Fe3 transport system, periplasmic component
AB987_0019	COG1840	ABC-type Fe3 transport system, periplasmic component
AB987_0021	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB987_0022	COG1414	Transcriptional regulator
AB987_0024	COG0583	DNA-binding transcription factor activity
AB987_0026	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0027	COG2814	Major facilitator Superfamily
AB987_0030	COG4638	Rieske (2fe-2S)
AB987_0032	COG0154	amidase activity
AB987_0033	COG3038	cytochrome b561
AB987_0034	COG0753	catalase activity
AB987_0037	COG3327	negative regulation of DNA-templated transcription, initiation
AB987_0038	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
AB987_0039	COG0183	Belongs to the thiolase family
AB987_0040	COG1250	3-hydroxyacyl-CoA dehydrogenase
AB987_0041	COG1024	Enoyl-CoA hydratase
AB987_0042	COG1024	Enoyl-CoA hydratase
AB987_0043	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB987_0044	COG2151	metal-sulfur cluster biosynthetic enzyme
AB987_0045	COG3396	Phenylacetate-CoA oxygenase
AB987_0046	COG3460	Phenylacetate-CoA oxygenase
AB987_0047	COG3396	Phenylacetate-CoA oxygenase
AB987_0048	COG2030	dehydratase
AB987_0048	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0049	COG1760	l-serine dehydratase
AB987_0050	COG0531	amino acid
AB987_0051	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0054	COG3328	transposase activity
AB987_0062	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB987_0064	COG0789	Transcriptional regulator
AB987_0068	COG1116	anion transmembrane transporter activity
AB987_0069	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AB987_0071	COG0864	Transcriptional regulator
AB987_0073	COG1733	regulation of RNA biosynthetic process
AB987_0074	COG2249	NAD(P)H dehydrogenase (quinone) activity
AB987_0075	COG0439	Biotin carboxylase
AB987_0079	COG1063	alcohol dehydrogenase
AB987_0082	COG1309	transcriptional regulator
AB987_0084	COG2801	Transposase and inactivated derivatives
AB987_0089	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0098	COG0038	chloride channel
AB987_0099	COG4770	biotin carboxylase activity
AB987_0103	COG1914	H( )-stimulated, divalent metal cation uptake system
AB987_0104	COG0583	DNA-binding transcription factor activity
AB987_0118	COG1560	Kdo2-lipid A biosynthetic process
AB987_0121	COG1522	sequence-specific DNA binding
AB987_0125	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AB987_0133	COG1538	Outer membrane efflux protein
AB987_0134	COG1137	ATPase activity
AB987_0135	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AB987_0137	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AB987_0138	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AB987_0138	COG0517	IMP dehydrogenase activity
AB987_0199	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0200	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0202	COG1278	Cold shock
AB987_0203	COG1280	lysine exporter protein (LysE YggA)
AB987_0210	COG1570	exodeoxyribonuclease VII activity
AB987_0227	COG2871	sodium ion transport
AB987_0229	COG0583	DNA-binding transcription factor activity
AB987_0231	COG4638	Rieske (2fe-2S)
AB987_0232	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AB987_0233	COG0633	Ferredoxin
AB987_0233	COG0543	2 iron, 2 sulfur cluster binding
AB987_0234	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_0235	COG3135	benzoate transporter
AB987_0236	COG2814	Major facilitator Superfamily
AB987_0237	COG3328	transposase activity
AB987_0238	COG2814	Major facilitator Superfamily
AB987_0241	COG1643	Atp-dependent helicase
AB987_0242	COG0450	alkyl hydroperoxide reductase
AB987_0244	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AB987_0246	COG3634	alkyl hydroperoxide reductase activity
AB987_0250	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AB987_0251	COG0625	glutathione transferase activity
AB987_0253	COG2885	chlorophyll binding
AB987_0263	COG1765	OsmC-like protein
AB987_0265	COG0667	Aldo Keto reductase
AB987_0268	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AB987_0270	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AB987_0272	COG0582	viral genome integration into host DNA
AB987_0274	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AB987_0280	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AB987_0299	COG3567	Phage-associated protein, HI1409 family
AB987_0305	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0332	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AB987_0334	COG3038	cytochrome b561
AB987_0335	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AB987_0336	COG2252	PERMEase
AB987_0338	COG2072	flavoprotein involved in K transport
AB987_0341	COG1741	Belongs to the pirin family
AB987_0342	COG1309	transcriptional regulator
AB987_0344	COG0300	oxidoreductase activity
AB987_0345	COG2072	flavoprotein involved in K transport
AB987_0346	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AB987_0347	COG0583	DNA-binding transcription factor activity
AB987_0349	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AB987_0361	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AB987_0364	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB987_0367	COG2814	Major facilitator Superfamily
AB987_0368	COG1024	Enoyl-CoA hydratase
AB987_0369	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0371	COG1960	acyl-CoA dehydrogenase activity
AB987_0376	COG2186	Transcriptional regulator
AB987_0377	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0379	COG4948	Mandelate Racemase Muconate Lactonizing
AB987_0380	COG2271	Major facilitator Superfamily
AB987_0381	COG2721	sulfolactate sulfo-lyase activity
AB987_0382	COG0697	spore germination
AB987_0386	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0387	COG1113	amino acid transport
AB987_0391	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0395	COG0531	amino acid
AB987_0397	COG1113	amino acid transport
AB987_0401	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0406	COG1902	pentaerythritol trinitrate reductase activity
AB987_0406	COG0446	pyridine nucleotide-disulphide oxidoreductase
AB987_0408	COG5001	Diguanylate cyclase
AB987_0408	COG3706	GGDEF domain
AB987_0408	COG2203	Gaf domain
AB987_0408	COG4251	negative regulation of phosphorylation
AB987_0410	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AB987_0414	COG4172	Belongs to the ABC transporter superfamily
AB987_0415	COG4239	(ABC) transporter, permease
AB987_0416	COG4174	ABC transporter (Permease)
AB987_0418	COG0741	lytic transglycosylase activity
AB987_0418	COG1388	LysM domain
AB987_0418	COG1388	LysM domain
AB987_0418	COG0741	lytic transglycosylase activity
AB987_0419	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AB987_0428	COG0583	DNA-binding transcription factor activity
AB987_0429	COG1279	arginine transmembrane transporter activity
AB987_0434	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB987_0435	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB987_0436	COG0006	proline dipeptidase activity
AB987_0443	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AB987_0448	COG3384	dioxygenase
AB987_0450	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AB987_0451	COG2878	Part of a membrane complex involved in electron transport
AB987_0452	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AB987_0458	COG0768	penicillin binding
AB987_0459	COG0742	ribosomal rna small subunit methyltransferase
AB987_0462	COG0830	nickel cation binding
AB987_0464	COG0804	urea catabolic process
AB987_0473	COG1253	flavin adenine dinucleotide binding
AB987_0475	COG2851	Citrate transporter
AB987_0484	COG1773	rubredoxin
AB987_0485	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB987_0487	COG0583	DNA-binding transcription factor activity
AB987_0492	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AB987_0493	COG4181	ATPase activity
AB987_0503	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AB987_0511	COG0306	phosphate transporter
AB987_0518	COG3958	Transketolase
AB987_0519	COG3959	Transketolase, thiamine diphosphate binding domain
AB987_0520	COG2271	Major facilitator Superfamily
AB987_0521	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_0522	COG0583	DNA-binding transcription factor activity
AB987_0525	COG2223	nitrite transmembrane transporter activity
AB987_0526	COG2207	Transcriptional regulator
AB987_0527	COG2066	Belongs to the glutaminase family
AB987_0528	COG0242	peptide deformylase activity
AB987_0530	COG0477	Major facilitator Superfamily
AB987_0532	COG0028	Belongs to the TPP enzyme family
AB987_0533	COG1414	Transcriptional regulator
AB987_0536	COG1024	Enoyl-CoA hydratase
AB987_0538	COG1215	transferase activity, transferring glycosyl groups
AB987_0539	COG1649	PFAM Uncharacterised BCR, COG1649
AB987_0539	COG0726	polysaccharide deacetylase
AB987_0541	COG4681	YaeQ
AB987_0542	COG3328	transposase activity
AB987_0544	COG1301	dicarboxylic acid transport
AB987_0545	COG0523	cobalamin synthesis protein
AB987_0547	COG1607	acyl-coa hydrolase
AB987_0549	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AB987_0550	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AB987_0551	COG1309	transcriptional regulator
AB987_0556	COG2040	homocysteine
AB987_0557	COG0531	amino acid
AB987_0576	COG2826	transposase and inactivated derivatives, IS30 family
AB987_0584	COG3617	BRO family, N-terminal domain
AB987_0588	COG0582	viral genome integration into host DNA
AB987_0589	COG0405	Gamma-glutamyltransferase
AB987_0590	COG2814	Major facilitator Superfamily
AB987_0592	COG2050	protein possibly involved in aromatic compounds catabolism
AB987_0595	COG1090	epimerase
AB987_0599	COG0420	3'-5' exonuclease activity
AB987_0604	COG0735	belongs to the Fur family
AB987_0605	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AB987_0609	COG0121	glutamine amidotransferase
AB987_0612	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AB987_0614	COG0210	DNA helicase
AB987_0615	COG2885	chlorophyll binding
AB987_0616	COG0204	Acyl-transferase
AB987_0619	COG2894	cell division
AB987_0622	COG1280	lysine exporter protein (LysE YggA)
AB987_0623	COG1674	ftsk spoiiie
AB987_0623	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AB987_0624	COG0492	ferredoxin-NADP+ reductase activity
AB987_0625	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AB987_0627	COG0456	acetyltransferase
AB987_0640	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AB987_0640	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AB987_0644	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0648	COG0473	3-isopropylmalate dehydrogenase activity
AB987_0649	COG0583	DNA-binding transcription factor activity
AB987_0652	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AB987_0657	COG0564	pseudouridine synthase activity
AB987_0659	COG0358	DNA primase activity
AB987_0662	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AB987_0668	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AB987_0674	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AB987_0676	COG0351	phosphomethylpyrimidine kinase
AB987_0676	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AB987_0676	COG0352	thiamine-phosphate diphosphorylase activity
AB987_0677	COG1652	LysM domain
AB987_0682	COG1399	metal-binding, possibly nucleic acid-binding protein
AB987_0683	COG3101	peptidyl-lysine hydroxylation
AB987_0684	COG0009	L-threonylcarbamoyladenylate synthase
AB987_0685	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AB987_0686	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AB987_0689	COG4106	trans-aconitate 2-methyltransferase activity
AB987_0692	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AB987_0692	COG2226	methyltransferase
AB987_0692	COG0596	Alpha beta hydrolase
AB987_0693	COG1877	trehalose-phosphatase activity
AB987_0694	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
AB987_0695	COG2223	nitrite transmembrane transporter activity
AB987_0699	COG1196	nuclear chromosome segregation
AB987_0701	COG0730	response to heat
AB987_0704	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AB987_0706	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AB987_0717	COG0489	protein tyrosine kinase activity
AB987_0719	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AB987_0719	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AB987_0725	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AB987_0726	COG2081	HI0933 family
AB987_0728	COG0668	transmembrane transport
AB987_0732	COG0583	DNA-binding transcription factor activity
AB987_0737	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AB987_0738	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AB987_0744	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AB987_0751	COG2205	protein histidine kinase activity
AB987_0752	COG0745	RESPONSE REGULATOR receiver
AB987_0755	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AB987_0757	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB987_0758	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AB987_0760	COG0583	DNA-binding transcription factor activity
AB987_0762	COG0583	DNA-binding transcription factor activity
AB987_0765	COG0583	DNA-binding transcription factor activity
AB987_0767	COG1053	succinate dehydrogenase
AB987_0769	COG1063	alcohol dehydrogenase
AB987_0775	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AB987_0776	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AB987_0777	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AB987_0780	COG3667	copper resistance
AB987_0781	COG2132	Multicopper oxidase
AB987_0783	COG0561	phosphatase activity
AB987_0784	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AB987_0789	COG1214	PFAM Peptidase M22, glycoprotease
AB987_0796	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AB987_0798	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AB987_0799	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AB987_0800	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AB987_0814	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AB987_0816	COG1846	Transcriptional regulator
AB987_0817	COG1764	response to oxidative stress
AB987_0825	COG0037	tRNA processing
AB987_0827	COG0248	Ppx GppA phosphatase
AB987_0832	COG0072	phenylalanine-tRNA ligase activity
AB987_0837	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AB987_0840	COG1238	metal cluster binding
AB987_0841	COG0625	glutathione transferase activity
AB987_0844	COG0318	PFAM AMP-dependent synthetase and ligase
AB987_0845	COG3028	Belongs to the UPF0307 family
AB987_0846	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AB987_0850	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AB987_0851	COG0617	tRNA 3'-terminal CCA addition
AB987_0852	COG1555	photosystem II stabilization
AB987_0853	COG3956	TIGRFAM MazG family protein
AB987_0855	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AB987_0859	COG5002	protein histidine kinase activity
AB987_0859	COG2205	protein histidine kinase activity
AB987_0859	COG0784	Response regulator, receiver
AB987_0860	COG1024	Enoyl-CoA hydratase
AB987_0861	COG2084	Dehydrogenase
AB987_0862	COG3622	Belongs to the hyi family
AB987_0866	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AB987_0867	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AB987_0868	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AB987_0869	COG0697	spore germination
AB987_0871	COG2814	Major facilitator Superfamily
AB987_0876	COG2072	flavoprotein involved in K transport
AB987_0877	COG0492	ferredoxin-NADP+ reductase activity
AB987_0878	COG0431	NADPH-dependent FMN reductase
AB987_0879	COG0798	PFAM Bile acid sodium symporter
AB987_0881	COG0640	Transcriptional regulator
AB987_0887	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AB987_0892	COG2132	Multicopper oxidase
AB987_0895	COG2205	protein histidine kinase activity
AB987_0907	COG2801	Transposase and inactivated derivatives
AB987_0913	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AB987_0915	COG0583	DNA-binding transcription factor activity
AB987_0917	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AB987_0919	COG0084	hydrolase, TatD family'
AB987_0922	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AB987_0924	COG1401	restriction endodeoxyribonuclease activity
AB987_0944	COG2801	Transposase and inactivated derivatives
AB987_0948	COG0440	acetolactate synthase activity
AB987_0949	COG0028	Belongs to the TPP enzyme family
AB987_0954	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB987_0955	COG1136	(ABC) transporter
AB987_0955	COG0577	efflux transmembrane transporter activity
AB987_0956	COG1538	Outer membrane efflux protein
AB987_0959	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AB987_0960	COG1162	GTPase activity
AB987_0962	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AB987_0970	COG1426	Protein conserved in bacteria
AB987_0977	COG0793	Belongs to the peptidase S41A family
AB987_0983	COG1012	belongs to the aldehyde dehydrogenase family
AB987_0984	COG3265	gluconokinase activity
AB987_0988	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AB987_0989	COG0857	belongs to the CobB CobQ family
AB987_0989	COG0280	phosphate acetyltransferase
AB987_0990	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AB987_0990	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AB987_0994	COG0740	serine-type endopeptidase activity
AB987_0996	COG4774	siderophore transport
AB987_0998	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AB987_1000	COG2813	Specifically methylates the guanine in position
AB987_1000	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AB987_1020	COG0788	formyltetrahydrofolate deformylase activity
AB987_1023	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AB987_1024	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AB987_1025	COG4651	solute:proton antiporter activity
AB987_1025	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AB987_1029	COG0724	RNA recognition motif
AB987_1030	COG0210	DNA helicase
AB987_1035	COG1733	regulation of RNA biosynthetic process
AB987_1040	COG1280	lysine exporter protein (LysE YggA)
AB987_1041	COG1560	Kdo2-lipid A biosynthetic process
AB987_1043	COG1301	dicarboxylic acid transport
AB987_1054	COG0473	3-isopropylmalate dehydrogenase activity
AB987_1059	COG0583	DNA-binding transcription factor activity
AB987_1067	COG0583	DNA-binding transcription factor activity
AB987_1069	COG0625	glutathione transferase activity
AB987_1070	COG2378	regulation of single-species biofilm formation
AB987_1071	COG0546	phosphoglycolate phosphatase activity
AB987_1074	COG1530	ribonuclease E activity
AB987_1078	COG0583	DNA-binding transcription factor activity
AB987_1079	COG4221	oxidoreductase activity
AB987_1080	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AB987_1082	COG0534	Mate efflux family protein
AB987_1085	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AB987_1103	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AB987_1104	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB987_1107	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AB987_1109	COG0644	oxidoreductase
AB987_1109	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AB987_1111	COG0425	Belongs to the sulfur carrier protein TusA family
AB987_1112	COG4535	Mg2 and Co2 transporter CorC
AB987_1114	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AB987_1118	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AB987_1119	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AB987_1119	COG0475	glutathione-regulated potassium exporter activity
AB987_1122	COG0484	heat shock protein binding
AB987_1123	COG0789	Transcriptional regulator
AB987_1124	COG0598	Magnesium transport protein CorA
AB987_1128	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AB987_1129	COG1074	ATP-dependent DNA helicase activity
AB987_1130	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AB987_1134	COG2226	methyltransferase
AB987_1138	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AB987_1142	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AB987_1142	COG2111	Na H antiporter
AB987_1143	COG1006	Multisubunit Na H antiporter MnhC subunit
AB987_1144	COG0651	ATP synthesis coupled electron transport
AB987_1146	COG2212	antiporter activity
AB987_1150	COG0195	Participates in both transcription termination and antitermination
AB987_1160	COG0237	dephospho-CoA kinase activity
AB987_1162	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AB987_1165	COG0497	DNA recombination
AB987_1167	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AB987_1173	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AB987_1173	COG2169	Transcriptional regulator
AB987_1174	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AB987_1189	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AB987_1192	COG0326	Molecular chaperone. Has ATPase activity
AB987_1196	COG2056	Na+-H+ antiporter family
AB987_1198	COG0596	Alpha beta hydrolase
AB987_1218	COG0546	phosphoglycolate phosphatase activity
AB987_1219	COG1716	ATPase activity
AB987_1229	COG0181	hydroxymethylbilane synthase activity
AB987_1231	COG3275	phosphorelay sensor kinase activity
AB987_1235	COG1538	Outer membrane efflux protein
AB987_1236	COG0697	spore germination
AB987_1241	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AB987_1242	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AB987_1243	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AB987_1244	COG0772	Belongs to the SEDS family
AB987_1249	COG4974	Belongs to the 'phage' integrase family
AB987_1250	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AB987_1252	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AB987_1254	COG2197	response regulator
AB987_1257	COG0793	Belongs to the peptidase S41A family
AB987_1258	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AB987_1259	COG0795	lipopolysaccharide-transporting ATPase activity
AB987_1267	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AB987_1267	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AB987_1269	COG0004	ammonium transporteR
AB987_1270	COG0347	Belongs to the P(II) protein family
AB987_1272	COG0606	chelatase, subunit chli
AB987_1273	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB987_1275	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB987_1279	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AB987_1282	COG0318	PFAM AMP-dependent synthetase and ligase
AB987_1284	COG0477	Major facilitator Superfamily
AB987_1285	COG2860	membrane
AB987_1287	COG1253	flavin adenine dinucleotide binding
AB987_1290	COG2814	Major facilitator Superfamily
AB987_1292	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AB987_1293	COG0745	RESPONSE REGULATOR receiver
AB987_1294	COG2205	protein histidine kinase activity
AB987_1295	COG4452	Inner membrane protein CreD
AB987_1303	COG0655	NAD(P)H dehydrogenase (quinone) activity
AB987_1305	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AB987_1322	COG0758	DNA mediated transformation
AB987_1324	COG0697	spore germination
AB987_1325	COG1309	transcriptional regulator
AB987_1328	COG0386	Belongs to the glutathione peroxidase family
AB987_1341	COG1121	(ABC) transporter
AB987_1342	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AB987_1343	COG1280	lysine exporter protein (LysE YggA)
AB987_1344	COG2837	iron assimilation
AB987_1345	COG0281	malic enzyme
AB987_1354	COG0519	Catalyzes the synthesis of GMP from XMP
AB987_1354	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AB987_1355	COG4399	Belongs to the UPF0754 family
AB987_1356	COG2259	Doxx family
AB987_1357	COG0586	Pfam SNARE associated Golgi protein
AB987_1363	COG1192	Involved in chromosome partitioning
AB987_1365	COG0271	Belongs to the BolA IbaG family
AB987_1369	COG2267	carboxylic ester hydrolase activity
AB987_1371	COG0477	Major facilitator Superfamily
AB987_1372	COG1024	Enoyl-CoA hydratase
AB987_1373	COG1024	Enoyl-CoA hydratase
AB987_1374	COG1960	acyl-CoA dehydrogenase activity
AB987_1375	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AB987_1379	COG1113	amino acid transport
AB987_1380	COG0251	oxidation-reduction process
AB987_1383	COG1522	sequence-specific DNA binding
AB987_1388	COG0564	pseudouridine synthase activity
AB987_1395	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AB987_1398	COG1802	Transcriptional regulator
AB987_1399	COG1448	Aminotransferase
AB987_1400	COG0277	FAD linked oxidase domain protein
AB987_1402	COG2186	Transcriptional regulator
AB987_1404	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AB987_1406	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AB987_1409	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AB987_1416	COG2244	polysaccharide biosynthetic process
AB987_1417	COG1215	transferase activity, transferring glycosyl groups
AB987_1420	COG1091	dTDP-4-dehydrorhamnose reductase activity
AB987_1422	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AB987_1423	COG1596	polysaccharide export
AB987_1428	COG0728	peptidoglycan biosynthetic process
AB987_1429	COG3023	N-Acetylmuramoyl-L-alanine amidase
AB987_1441	COG0546	phosphoglycolate phosphatase activity
AB987_1442	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_1446	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB987_1447	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB987_1448	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB987_1449	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB987_1450	COG1116	anion transmembrane transporter activity
AB987_1451	COG1309	transcriptional regulator
AB987_1452	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AB987_1454	COG0196	riboflavin kinase activity
AB987_1455	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AB987_1457	COG1047	Peptidyl-prolyl cis-trans
AB987_1467	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AB987_1468	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AB987_1469	COG0596	Alpha beta hydrolase
AB987_1474	COG0488	(ABC) transporter
AB987_1475	COG0586	Pfam SNARE associated Golgi protein
AB987_1477	COG0187	DNA topoisomerase II activity
AB987_1479	COG0592	DNA-directed DNA polymerase activity
AB987_1481	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AB987_1484	COG0706	membrane insertase activity
AB987_1487	COG1230	cation diffusion facilitator family transporter
AB987_1488	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AB987_1492	COG0402	S-adenosylhomocysteine deaminase activity
AB987_1494	COG0754	glutathionylspermidine amidase activity
AB987_1496	COG0861	Integral membrane protein TerC family
AB987_1497	COG0671	phosphoesterase, PA-phosphatase related
AB987_1500	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AB987_1504	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AB987_1505	COG2951	lytic endotransglycosylase activity
AB987_1511	COG0583	DNA-binding transcription factor activity
AB987_1517	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AB987_1528	COG0733	neurotransmitter:sodium symporter activity
AB987_1530	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AB987_1535	COG0583	DNA-binding transcription factor activity
AB987_1536	COG2233	PERMEase
AB987_1539	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB987_1546	COG2814	Major facilitator Superfamily
AB987_1547	COG0656	L-ascorbic acid biosynthetic process
AB987_1548	COG0656	L-ascorbic acid biosynthetic process
AB987_1549	COG0583	DNA-binding transcription factor activity
AB987_1551	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB987_1552	COG1064	alcohol dehydrogenase
AB987_1553	COG2818	Glycosylase
AB987_1556	COG1194	a g-specific adenine glycosylase
AB987_1560	COG2983	Belongs to the UPF0260 family
AB987_1561	COG2133	pyrroloquinoline quinone binding
AB987_1562	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AB987_1563	COG2116	formate transmembrane transporter activity
AB987_1567	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB987_1568	COG1335	isochorismatase
AB987_1569	COG0385	Bile acid
AB987_1572	COG1683	Conserved Protein
AB987_1576	COG0625	glutathione transferase activity
AB987_1578	COG1113	amino acid transport
AB987_1580	COG0523	cobalamin synthesis protein
AB987_1584	COG2188	Transcriptional regulator
AB987_1590	COG0010	Belongs to the arginase family
AB987_1595	COG2826	transposase and inactivated derivatives, IS30 family
AB987_1596	COG0010	Belongs to the arginase family
AB987_1598	COG0546	phosphoglycolate phosphatase activity
AB987_1599	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AB987_1600	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AB987_1602	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AB987_1604	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AB987_1609	COG0560	Phosphoserine phosphatase
AB987_1609	COG3830	Belongs to the UPF0237 family
AB987_1621	COG0534	Mate efflux family protein
AB987_1622	COG0436	Aminotransferase
AB987_1623	COG2733	membrane
AB987_1626	COG2918	glutathione biosynthetic process
AB987_1631	COG3150	esterase
AB987_1633	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
AB987_1635	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB987_1637	COG2233	PERMEase
AB987_1638	COG2351	hydroxyisourate hydrolase activity
AB987_1645	COG3706	GGDEF domain
AB987_1648	COG1393	Belongs to the ArsC family
AB987_1649	COG0708	Exodeoxyribonuclease III
AB987_1654	COG0189	ligase activity
AB987_1658	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AB987_1660	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AB987_1663	COG4942	peptidase
AB987_1665	COG0508	dehydrogenase complex catalyzes the overall conversion of
AB987_1667	COG2119	membrane
AB987_1668	COG4774	siderophore transport
AB987_1669	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB987_1669	COG0426	domain, Protein
AB987_1674	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AB987_1678	COG1902	pentaerythritol trinitrate reductase activity
AB987_1679	COG1519	Transferase
AB987_1680	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AB987_1681	COG0668	transmembrane transport
AB987_1684	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AB987_1685	COG1335	isochorismatase
AB987_1686	COG1522	sequence-specific DNA binding
AB987_1692	COG2205	protein histidine kinase activity
AB987_1692	COG0784	Response regulator, receiver
AB987_1692	COG2198	Histidine kinase
AB987_1693	COG3162	membrane
AB987_1694	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AB987_1696	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AB987_1698	COG3706	GGDEF domain
AB987_1700	COG1309	transcriptional regulator
AB987_1704	COG0351	phosphomethylpyrimidine kinase
AB987_1704	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AB987_1704	COG0352	thiamine-phosphate diphosphorylase activity
AB987_1706	COG2814	Major facilitator Superfamily
AB987_1709	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AB987_1711	COG1113	amino acid transport
AB987_1713	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AB987_1714	COG1012	belongs to the aldehyde dehydrogenase family
AB987_1716	COG1335	isochorismatase
AB987_1722	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AB987_1755	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AB987_1762	COG0582	viral genome integration into host DNA
AB987_1774	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AB987_1777	COG2329	Antibiotic biosynthesis monooxygenase
AB987_1785	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AB987_1791	COG0427	acetyl-CoA hydrolase
AB987_1793	COG0745	RESPONSE REGULATOR receiver
AB987_1795	COG0659	secondary active sulfate transmembrane transporter activity
AB987_1796	COG4221	oxidoreductase activity
AB987_1798	COG0488	(ABC) transporter
AB987_1814	COG0833	amino acid
AB987_1823	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AB987_1824	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AB987_1827	COG2226	methyltransferase
AB987_1837	COG0070	glutamate synthase
AB987_1837	COG0069	glutamate synthase activity
AB987_1837	COG0067	glutamate synthase
AB987_1838	COG0493	'glutamate synthase
AB987_1840	COG1704	LemA family
AB987_1841	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AB987_1845	COG3307	-O-antigen
AB987_1849	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AB987_1851	COG0194	GDP metabolic process
AB987_1861	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AB987_1865	COG5380	lipid catabolic process
AB987_1866	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AB987_1871	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AB987_1872	COG0277	FAD linked oxidase domain protein
AB987_1874	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AB987_1875	COG2249	NAD(P)H dehydrogenase (quinone) activity
AB987_1879	COG1289	transmembrane transporter activity
AB987_1881	COG0628	permease
AB987_1888	COG0833	amino acid
AB987_1890	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AB987_1891	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AB987_1893	COG1012	belongs to the aldehyde dehydrogenase family
AB987_1902	COG0583	DNA-binding transcription factor activity
AB987_1911	COG0517	IMP dehydrogenase activity
AB987_1912	COG1983	PspC domain protein
AB987_1914	COG1960	acyl-CoA dehydrogenase activity
AB987_1917	COG0408	coproporphyrinogen oxidase activity
AB987_1921	COG0513	Belongs to the DEAD box helicase family
AB987_1923	COG1127	ABC transporter
AB987_1924	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AB987_1926	COG2854	intermembrane phospholipid transfer
AB987_1929	COG0598	Magnesium transport protein CorA
AB987_1931	COG0494	nUDIX hydrolase
AB987_1932	COG1040	competence protein
AB987_1933	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AB987_1937	COG1946	Acyl-CoA thioesterase
AB987_1938	COG1301	dicarboxylic acid transport
AB987_1941	COG1959	2 iron, 2 sulfur cluster binding
AB987_1942	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB987_1942	COG1017	nitric oxide dioxygenase activity
AB987_1943	COG0433	COG0433 Predicted ATPase
AB987_1944	COG0626	cystathionine gamma-synthase activity
AB987_1968	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AB987_1970	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AB987_1975	COG1960	acyl-CoA dehydrogenase activity
AB987_1976	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AB987_1982	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AB987_1983	COG0339	signal peptide processing
AB987_1984	COG0557	exoribonuclease II activity
AB987_1993	COG0179	Fumarylacetoacetate (FAA) hydrolase
AB987_1994	COG2169	Transcriptional regulator
AB987_1995	COG0697	spore germination
AB987_1996	COG1295	ribonuclease BN
AB987_2003	COG1702	phosphate starvation-inducible protein PhoH
AB987_2005	COG0739	heme binding
AB987_2005	COG0741	lytic transglycosylase activity
AB987_2005	COG1196	nuclear chromosome segregation
AB987_2011	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AB987_2012	COG1183	phosphatidylcholine synthase activity
AB987_2023	COG1960	acyl-CoA dehydrogenase activity
AB987_2024	COG1309	transcriptional regulator
AB987_2028	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AB987_2029	COG1960	acyl-CoA dehydrogenase activity
AB987_2033	COG2969	positive regulation of protein catabolic process
AB987_2035	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AB987_2037	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AB987_2038	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AB987_2039	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AB987_2043	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AB987_2045	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AB987_2046	COG1408	metallophosphoesterase
AB987_2048	COG2199	diguanylate cyclase activity
AB987_2058	COG3453	Protein conserved in bacteria
AB987_2058	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB987_2062	COG1607	acyl-coa hydrolase
AB987_2068	COG2350	Protein conserved in bacteria
AB987_2070	COG0613	PHP domain protein
AB987_2071	COG3781	membrane
AB987_2073	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AB987_2074	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AB987_2076	COG1862	Preprotein translocase
AB987_2082	COG2205	protein histidine kinase activity
AB987_2083	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AB987_2086	COG0726	polysaccharide deacetylase
AB987_2087	COG0438	transferase activity, transferring glycosyl groups
AB987_2090	COG1091	dTDP-4-dehydrorhamnose reductase activity
AB987_2093	COG1215	transferase activity, transferring glycosyl groups
AB987_2104	COG1960	acyl-CoA dehydrogenase activity
AB987_2105	COG1960	acyl-CoA dehydrogenase activity
AB987_2107	COG2205	protein histidine kinase activity
AB987_2108	COG0745	RESPONSE REGULATOR receiver
AB987_2109	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AB987_2113	COG2096	Adenosyltransferase
AB987_2116	COG0133	tryptophan synthase activity
AB987_2124	COG0285	dihydrofolate synthase activity
AB987_2128	COG0450	alkyl hydroperoxide reductase
AB987_2131	COG0477	Major facilitator Superfamily
AB987_2132	COG1272	protein, Hemolysin III
AB987_2138	COG1024	Enoyl-CoA hydratase
AB987_2138	COG1250	3-hydroxyacyl-CoA dehydrogenase
AB987_2139	COG0183	Belongs to the thiolase family
AB987_2140	COG2207	Transcriptional regulator
AB987_2145	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB987_2149	COG0183	Belongs to the thiolase family
AB987_2151	COG2885	chlorophyll binding
AB987_2151	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AB987_2153	COG1690	Belongs to the RtcB family
AB987_2154	COG0833	amino acid
AB987_2156	COG2233	PERMEase
AB987_2162	COG2094	Belongs to the DNA glycosylase MPG family
AB987_2163	COG4772	TonB-dependent receptor
AB987_2164	COG1902	pentaerythritol trinitrate reductase activity
AB987_2165	COG0679	Auxin Efflux Carrier
AB987_2167	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AB987_2168	COG0354	folic acid binding
AB987_2170	COG3189	MarR family transcriptional regulator
AB987_2171	COG2824	Alkylphosphonate utilization operon protein PhnA
AB987_2172	COG3422	double-strand break repair
AB987_2180	COG0840	transmembrane signaling receptor activity
AB987_2184	COG5510	response to toxic substance
AB987_2186	COG2832	Protein of unknown function (DUF454)
AB987_2187	COG1376	ErfK ybiS ycfS ynhG family protein
AB987_2197	COG1289	transmembrane transporter activity
AB987_2198	COG2814	Major facilitator Superfamily
AB987_2202	COG1115	amino acid carrier protein
AB987_2203	COG1752	Esterase of the alpha-beta hydrolase superfamily
AB987_2204	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AB987_2205	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AB987_2206	COG3590	peptidase
AB987_2211	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AB987_2213	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AB987_2214	COG1077	Cell shape determining protein MreB Mrl
AB987_2215	COG1792	Involved in formation and maintenance of cell shape
AB987_2217	COG0424	maF-like protein
AB987_2218	COG1530	ribonuclease E activity
AB987_2220	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB987_2224	COG2249	NAD(P)H dehydrogenase (quinone) activity
AB987_2229	COG2207	Transcriptional regulator
AB987_2240	COG0582	viral genome integration into host DNA
AB987_2242	COG1113	amino acid transport
AB987_2243	COG2828	Protein conserved in bacteria
AB987_2244	COG0142	geranyltranstransferase activity
AB987_2245	COG2315	Protein conserved in bacteria
AB987_2248	COG1752	Esterase of the alpha-beta hydrolase superfamily
AB987_2252	COG2194	sulfuric ester hydrolase activity
AB987_2253	COG0745	RESPONSE REGULATOR receiver
AB987_2254	COG0642	Histidine kinase
AB987_2256	COG0004	ammonium transporteR
AB987_2257	COG0583	DNA-binding transcription factor activity
AB987_2262	COG0525	valine-tRNA ligase activity
AB987_2264	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_2266	COG0393	Putative heavy-metal-binding
AB987_2267	COG0393	Putative heavy-metal-binding
AB987_2268	COG1538	Outer membrane efflux protein
AB987_2270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB987_2271	COG0671	phosphoesterase, PA-phosphatase related
AB987_2277	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AB987_2280	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AB987_2280	COG1648	precorrin-2 dehydrogenase activity
AB987_2281	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AB987_2282	COG1733	regulation of RNA biosynthetic process
AB987_2285	COG0531	amino acid
AB987_2288	COG0321	lipoyl(octanoyl) transferase activity
AB987_2289	COG2921	Belongs to the UPF0250 family
AB987_2298	COG2009	succinate dehydrogenase
AB987_2299	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AB987_2300	COG1053	succinate dehydrogenase
AB987_2301	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AB987_2304	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AB987_2308	COG2354	Protein conserved in bacteria
AB987_2309	COG2321	neutral zinc metallopeptidase
AB987_2315	COG3328	transposase activity
AB987_2320	COG2843	Capsule synthesis protein
AB987_2323	COG0589	response to stress
AB987_2325	COG0251	oxidation-reduction process
AB987_2326	COG1309	transcriptional regulator
AB987_2329	COG0505	Belongs to the CarA family
AB987_2334	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AB987_2335	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AB987_2345	COG0477	Major facilitator Superfamily
AB987_2351	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AB987_2355	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB987_2356	COG0584	glycerophosphoryl diester phosphodiesterase
AB987_2360	COG0741	lytic transglycosylase activity
AB987_2364	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AB987_2366	COG2801	Transposase and inactivated derivatives
AB987_2375	COG2184	nucleotidyltransferase activity
AB987_2377	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AB987_2392	COG1785	Belongs to the alkaline phosphatase family
AB987_2393	COG1785	Belongs to the alkaline phosphatase family
AB987_2396	COG3706	GGDEF domain
AB987_2396	COG0745	RESPONSE REGULATOR receiver
AB987_2402	COG0582	viral genome integration into host DNA
AB987_2404	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB987_2405	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AB987_2414	COG0778	Nitroreductase
AB987_2417	COG1929	Belongs to the glycerate kinase type-1 family
AB987_2418	COG0243	molybdopterin cofactor binding
AB987_2419	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AB987_2420	COG3339	Conserved Protein
AB987_2422	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AB987_2425	COG1113	amino acid transport
AB987_2427	COG0019	diaminopimelate decarboxylase activity
AB987_2429	COG1280	lysine exporter protein (LysE YggA)
AB987_2430	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AB987_2436	COG0463	Glycosyl transferase, family 2
AB987_2440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB987_2447	COG4591	ABC-type transport system involved in lipoprotein release permease component
AB987_2448	COG1136	(ABC) transporter
AB987_2449	COG2333	competence protein COMEC
AB987_2449	COG0658	competence protein
AB987_2451	COG0616	signal peptide processing
AB987_2451	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AB987_2452	COG0596	Alpha beta hydrolase
AB987_2453	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AB987_2455	COG0628	permease
AB987_2462	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AB987_2466	COG0823	Involved in the tonB-independent uptake of proteins
AB987_2470	COG0824	Thioesterase
AB987_2471	COG1473	amidohydrolase
AB987_2472	COG1473	amidohydrolase
AB987_2476	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AB987_2476	COG0047	phosphoribosylformylglycinamidine synthase activity
AB987_2477	COG2814	Major facilitator Superfamily
AB987_2479	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AB987_2480	COG1024	Enoyl-CoA hydratase
AB987_2481	COG1051	belongs to the nudix hydrolase family
AB987_2481	COG1056	cytidyltransferase-related domain
AB987_2483	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AB987_2486	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AB987_2489	COG4625	pathogenesis
AB987_2490	COG0583	DNA-binding transcription factor activity
AB987_2491	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AB987_2492	COG4208	sulfate ABC transporter
AB987_2493	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AB987_2496	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AB987_2497	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AB987_2498	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AB987_2502	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AB987_2504	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AB987_2506	COG0681	Belongs to the peptidase S26 family
AB987_2509	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AB987_2511	COG1381	Involved in DNA repair and RecF pathway recombination
AB987_2512	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AB987_2516	COG4221	oxidoreductase activity
AB987_2525	COG0556	nucleotide-excision repair
AB987_2536	COG2070	2-Nitropropane dioxygenase
AB987_2542	COG1215	transferase activity, transferring glycosyl groups
AB987_2545	COG0415	Belongs to the DNA photolyase family
AB987_2547	COG1252	NADH dehydrogenase
AB987_2548	COG1686	Belongs to the peptidase S11 family
AB987_2551	COG1187	pseudouridine synthase activity
AB987_2556	COG0477	Major facilitator Superfamily
AB987_2557	COG0583	DNA-binding transcription factor activity
AB987_2560	COG0612	Peptidase, M16
AB987_2565	COG0352	thiamine-phosphate diphosphorylase activity
AB987_2573	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB987_2576	COG1309	transcriptional regulator
AB987_2578	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AB987_2579	COG0076	glutamate decarboxylase activity
AB987_2581	COG1522	sequence-specific DNA binding
AB987_2582	COG3961	Belongs to the TPP enzyme family
AB987_2583	COG1113	amino acid transport
AB987_2584	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AB987_2585	COG0573	inorganic phosphate transmembrane transporter activity
AB987_2587	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AB987_2588	COG0616	signal peptide processing
AB987_2596	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AB987_2597	COG1686	Belongs to the peptidase S11 family
AB987_2602	COG0583	DNA-binding transcription factor activity
AB987_2603	COG1067	ATP-dependent peptidase activity
AB987_2609	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AB987_2613	COG1966	Carbon starvation protein
AB987_2614	COG2879	small protein
AB987_2621	COG1741	Belongs to the pirin family
AB987_2623	COG2964	Protein conserved in bacteria
AB987_2626	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB987_2628	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AB987_2629	COG4605	iron ion homeostasis
AB987_2630	COG4604	ABC transporter, ATP-binding protein
AB987_2631	COG4607	ABC-type enterochelin transport system periplasmic component
AB987_2632	COG4774	siderophore transport
AB987_2634	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB987_2635	COG1021	2,3-dihydroxybenzoate-AMP ligase
AB987_2636	COG1535	isochorismatase
AB987_2636	COG3433	isochorismatase activity
AB987_2639	COG1132	(ABC) transporter
AB987_2640	COG5265	(ABC) transporter
AB987_2641	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
AB987_2646	COG3739	integral membrane protein
AB987_2653	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AB987_2659	COG0308	aminopeptidase N
AB987_2660	COG0512	Glutamine amidotransferase of anthranilate synthase
AB987_2662	COG3104	oligopeptide transport
AB987_2665	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AB987_2672	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AB987_2673	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AB987_2674	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AB987_2678	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AB987_2679	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AB987_2680	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AB987_2683	COG1960	acyl-CoA dehydrogenase activity
AB987_2684	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AB987_2685	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AB987_2688	COG2223	nitrite transmembrane transporter activity
AB987_2690	COG0024	Methionine aminopeptidase
AB987_2691	COG0052	Belongs to the universal ribosomal protein uS2 family
AB987_2694	COG2207	Transcriptional regulator
AB987_2698	COG2951	lytic endotransglycosylase activity
AB987_2699	COG0772	Belongs to the SEDS family
AB987_2702	COG0842	Transport permease protein
AB987_2703	COG1131	(ABC) transporter
AB987_2710	COG1538	Outer membrane efflux protein
AB987_2712	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB987_2715	COG4215	(ABC) transporter
AB987_2716	COG4160	amino acid transport
AB987_2717	COG4598	ABC transporter
AB987_2719	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AB987_2721	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB987_2724	COG1720	tRNA m6t6A37 methyltransferase activity
AB987_2728	COG0745	RESPONSE REGULATOR receiver
AB987_2729	COG0642	Histidine kinase
AB987_2731	COG0494	nUDIX hydrolase
AB987_2733	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AB987_2734	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AB987_2735	COG3139	Protein of unknown function (DUF1315)
AB987_2737	COG1301	dicarboxylic acid transport
AB987_2738	COG1960	acyl-CoA dehydrogenase activity
AB987_2741	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AB987_2743	COG2195	Cleaves the N-terminal amino acid of tripeptides
AB987_2744	COG1234	tRNA 3'-trailer cleavage
AB987_2750	COG2363	Small membrane protein
AB987_2754	COG0513	Belongs to the DEAD box helicase family
AB987_2756	COG0778	Nitroreductase
AB987_2762	COG1286	toxin biosynthetic process
AB987_2767	COG4783	chaperone-mediated protein folding
AB987_2768	COG1610	YqeY-like protein
AB987_2769	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AB987_2789	COG3111	PFAM Bacterial OB fold (BOF) protein
AB987_2795	COG3243	poly(R)-hydroxyalkanoic acid synthase
AB987_2796	COG0786	glutamate:sodium symporter activity
AB987_2798	COG2186	Transcriptional regulator
AB987_2809	COG0477	Major facilitator Superfamily
AB987_2810	COG1051	belongs to the nudix hydrolase family
AB987_2815	COG2801	Transposase and inactivated derivatives
AB987_2821	COG2995	paraquat-inducible protein a
AB987_2822	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AB987_2822	COG3008	intermembrane lipid transfer
AB987_2824	COG1794	racemase activity, acting on amino acids and derivatives
AB987_2830	COG1301	dicarboxylic acid transport
AB987_2832	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB987_2833	COG2011	ABC-type metal ion transport system permease component
AB987_2834	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AB987_2835	COG1464	Belongs to the NlpA lipoprotein family
AB987_2836	COG0151	Belongs to the GarS family
AB987_2837	COG0138	bifunctional purine biosynthesis protein purh
AB987_2844	COG2308	Evidence 4 Homologs of previously reported genes of
AB987_2845	COG2308	Evidence 4 Homologs of previously reported genes of
AB987_2847	COG1305	Transglutaminase-like
AB987_2849	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AB987_2850	COG0305	Participates in initiation and elongation during chromosome replication
AB987_2855	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AB987_2856	COG1845	cytochrome c oxidase, subunit III
AB987_2858	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AB987_2859	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AB987_2864	COG1649	PFAM Uncharacterised BCR, COG1649
AB987_2864	COG0726	polysaccharide deacetylase
AB987_2866	COG1215	transferase activity, transferring glycosyl groups
AB987_2867	COG3658	cytochrome
AB987_2869	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB987_2872	COG0583	DNA-binding transcription factor activity
AB987_2876	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB987_2877	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB987_2880	COG1960	acyl-CoA dehydrogenase activity
AB987_2881	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AB987_2882	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB987_2885	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AB987_2887	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AB987_2888	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AB987_2890	COG2205	protein histidine kinase activity
AB987_2891	COG0745	RESPONSE REGULATOR receiver
AB987_2892	COG0174	glutamine synthetase
AB987_2896	COG0729	surface antigen
AB987_2901	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AB987_2902	COG2814	Major facilitator Superfamily
AB987_2911	COG0776	regulation of translation
AB987_2917	COG3267	Type II secretory pathway component ExeA
AB987_2917	COG3409	Peptidoglycan-binding domain 1 protein
AB987_2921	COG4383	Mu-like prophage protein gp29
AB987_2922	COG2369	cell adhesion
AB987_2923	COG5005	Phage virion morphogenesis
AB987_2926	COG4397	Mu-like prophage major head subunit gpT
AB987_2946	COG0583	DNA-binding transcription factor activity
AB987_2949	COG1187	pseudouridine synthase activity
AB987_2953	COG0802	atpase or kinase
AB987_2954	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AB987_2956	COG1923	regulation of RNA biosynthetic process
AB987_2957	COG0697	spore germination
AB987_2963	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AB987_2965	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AB987_2965	COG0519	Catalyzes the synthesis of GMP from XMP
AB987_2966	COG4302	ethanolamine ammonia-lyase activity
AB987_2967	COG4303	Ethanolamine ammonia lyase large subunit
AB987_2968	COG0531	amino acid
AB987_2972	COG1454	alcohol dehydrogenase
AB987_2973	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AB987_2975	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AB987_2979	COG0308	aminopeptidase N
AB987_2983	COG1605	Chorismate mutase
AB987_2991	COG4773	Receptor
AB987_2996	COG0488	(ABC) transporter
AB987_2997	COG0589	response to stress
AB987_3002	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AB987_3004	COG3135	benzoate transporter
AB987_3005	COG1522	sequence-specific DNA binding
AB987_3008	COG0583	DNA-binding transcription factor activity
AB987_3010	COG0183	Belongs to the thiolase family
AB987_3016	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AB987_3019	COG0824	Thioesterase
AB987_3020	COG1454	alcohol dehydrogenase
AB987_3022	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AB987_3026	COG0069	glutamate synthase activity
AB987_3029	COG2826	transposase and inactivated derivatives, IS30 family
AB987_3032	COG2814	Major facilitator Superfamily
AB987_3035	COG0511	ligase activity, forming carbon-carbon bonds
AB987_3038	COG1116	anion transmembrane transporter activity
AB987_3038	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB987_3039	COG0745	RESPONSE REGULATOR receiver
AB987_3041	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB987_3041	COG2146	nitrite reductase [NAD(P)H] activity
AB987_3042	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB987_3043	COG0243	molybdopterin cofactor binding
AB987_3045	COG0243	molybdopterin cofactor binding
AB987_3046	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AB987_3049	COG0315	cyclic pyranopterin monophosphate synthase activity
AB987_3049	COG0521	Mo-molybdopterin cofactor biosynthetic process
AB987_3050	COG0303	'Molybdopterin
AB987_3052	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB987_3054	COG0697	spore germination
AB987_3058	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AB987_3059	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AB987_3071	COG2204	response regulator
AB987_3072	COG3852	Histidine kinase
AB987_3076	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AB987_3077	COG0575	Belongs to the CDS family
AB987_3084	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AB987_3086	COG2137	regulation of response to DNA damage stimulus
AB987_3088	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AB987_3089	COG1011	Hydrolase
AB987_3095	COG1522	sequence-specific DNA binding
AB987_3097	COG1113	amino acid transport
AB987_3101	COG0659	secondary active sulfate transmembrane transporter activity
AB987_3105	COG3300	MHYT domain
AB987_3105	COG5001	Diguanylate cyclase
AB987_3108	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AB987_3108	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AB987_3108	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AB987_3109	COG1105	Belongs to the carbohydrate kinase PfkB family
AB987_3110	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AB987_3110	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AB987_3115	COG0024	Methionine aminopeptidase
AB987_3116	COG0583	DNA-binding transcription factor activity
AB987_3118	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AB987_3119	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AB987_3120	COG0516	GMP reductase activity
AB987_3120	COG0517	IMP dehydrogenase activity
AB987_3126	COG0552	protein localization to endoplasmic reticulum
AB987_3128	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AB987_3130	COG1294	oxidase, subunit
AB987_3132	COG1585	Membrane protein implicated in regulation of membrane protease activity
AB987_3134	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AB987_3135	COG4774	siderophore transport
AB987_3138	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AB987_3139	COG0569	domain protein
AB987_3140	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AB987_3147	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AB987_3148	COG0542	response to heat
AB987_3150	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AB987_3153	COG0446	pyridine nucleotide-disulphide oxidoreductase
AB987_3153	COG1902	pentaerythritol trinitrate reductase activity
AB987_3162	COG2323	membrane
AB987_3163	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AB987_3165	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AB987_3166	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AB987_3167	COG0183	Belongs to the thiolase family
AB987_3168	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AB987_3169	COG0596	Alpha beta hydrolase
AB987_3170	COG2271	Major facilitator Superfamily
AB987_3171	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AB987_3172	COG3485	protocatechuate 3,4-dioxygenase
AB987_3173	COG3485	protocatechuate 3,4-dioxygenase
AB987_3174	COG0710	3-dehydroquinate dehydratase activity
AB987_3175	COG3420	alginic acid biosynthetic process
AB987_3176	COG3659	wide pore channel activity
AB987_3177	COG4993	Dehydrogenase
AB987_3179	COG2391	methyltransferase activity
AB987_3182	COG1414	Transcriptional regulator
AB987_3183	COG0583	DNA-binding transcription factor activity
AB987_3184	COG1960	acyl-CoA dehydrogenase activity
AB987_3189	COG2814	Major facilitator Superfamily
AB987_3192	COG0154	amidase activity
AB987_3196	COG4638	Rieske (2fe-2S)
AB987_3198	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_3200	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB987_3202	COG3733	amine oxidase
AB987_3204	COG1012	belongs to the aldehyde dehydrogenase family
AB987_3205	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AB987_3206	COG0183	Belongs to the thiolase family
AB987_3207	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AB987_3208	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AB987_3210	COG4829	muconolactone delta-isomerase
AB987_3211	COG4948	Mandelate Racemase Muconate Lactonizing
AB987_3212	COG0583	DNA-binding transcription factor activity
AB987_3214	COG2186	Transcriptional regulator
AB987_3219	COG1012	belongs to the aldehyde dehydrogenase family
AB987_3222	COG1902	pentaerythritol trinitrate reductase activity
AB987_3222	COG0446	pyridine nucleotide-disulphide oxidoreductase
AB987_3225	COG0789	Transcriptional regulator
AB987_3230	COG1309	transcriptional regulator
AB987_3232	COG1335	isochorismatase
AB987_3233	COG0583	DNA-binding transcription factor activity
AB987_3235	COG0475	glutathione-regulated potassium exporter activity
AB987_3235	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AB987_3237	COG1473	amidohydrolase
AB987_3254	COG0583	DNA-binding transcription factor activity
AB987_3259	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB987_3262	COG2271	Major facilitator Superfamily
AB987_3264	COG1566	PFAM secretion protein HlyD family protein
AB987_3267	COG1012	belongs to the aldehyde dehydrogenase family
AB987_3268	COG0129	dihydroxy-acid dehydratase activity
AB987_3270	COG0583	DNA-binding transcription factor activity
AB987_3271	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AB987_3275	COG1120	ATPase activity
AB987_3279	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AB987_3289	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AB987_3300	COG2801	Transposase and inactivated derivatives
AB987_3302	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
AB987_3306	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AB987_3312	COG3706	GGDEF domain
AB987_3319	COG0542	response to heat
AB987_3322	COG0071	Belongs to the small heat shock protein (HSP20) family
AB987_3325	COG2130	NADP-dependent
AB987_3326	COG1309	transcriptional regulator
AB987_3327	COG1902	pentaerythritol trinitrate reductase activity
AB987_3329	COG1979	alcohol dehydrogenase
AB987_3331	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AB987_3337	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AB987_3339	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB987_3343	COG1132	(ABC) transporter
AB987_3344	COG1132	(ABC) transporter
AB987_3348	COG4608	Belongs to the ABC transporter superfamily
AB987_3349	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AB987_3350	COG0601	transmembrane transport
AB987_3351	COG0747	negative chemotaxis
AB987_3360	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AB987_3374	COG1535	isochorismatase
AB987_3374	COG3433	isochorismatase activity
AB987_3375	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_3376	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AB987_3377	COG4149	molybdate abc transporter
AB987_3378	COG0725	ABC transporter, periplasmic molybdate-binding protein
AB987_3380	COG4638	Rieske (2fe-2S)
AB987_3381	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AB987_3382	COG0543	2 iron, 2 sulfur cluster binding
AB987_3382	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB987_3387	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB987_3390	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_3392	COG3328	transposase activity
AB987_3393	COG0412	Dienelactone hydrolase
AB987_3395	COG2207	Transcriptional regulator
AB987_3396	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_3397	COG2610	gluconate transmembrane transporter activity
AB987_3398	COG2610	gluconate transmembrane transporter activity
AB987_3400	COG1309	transcriptional regulator
AB987_3404	COG0583	DNA-binding transcription factor activity
AB987_3407	COG2031	fatty acid transporter
AB987_3408	COG0183	Belongs to the thiolase family
AB987_3409	COG0583	DNA-binding transcription factor activity
AB987_3410	COG0583	DNA-binding transcription factor activity
AB987_3413	COG1027	Aspartate ammonia-lyase
AB987_3415	COG0477	Major facilitator Superfamily
AB987_3420	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB987_3421	COG4521	taurine ABC transporter
AB987_3426	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AB987_3427	COG1733	regulation of RNA biosynthetic process
AB987_3428	COG2207	Transcriptional regulator
AB987_3428	COG3708	Transcriptional regulator
AB987_3431	COG0730	response to heat
AB987_3433	COG3453	Protein conserved in bacteria
AB987_3433	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB987_3435	COG3781	membrane
AB987_3436	COG1063	alcohol dehydrogenase
AB987_3438	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AB987_3439	COG0508	dehydrogenase complex catalyzes the overall conversion of
AB987_3440	COG0022	dehydrogenase e1 component
AB987_3441	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AB987_3443	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AB987_3446	COG3706	GGDEF domain
AB987_3449	COG0133	tryptophan synthase activity
AB987_3451	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AB987_3458	COG2826	transposase and inactivated derivatives, IS30 family
AB987_3459	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AB987_3464	COG2226	methyltransferase
AB987_3479	COG0842	Transport permease protein
AB987_3480	COG0842	Transport permease protein
AB987_3481	COG1131	(ABC) transporter
AB987_3483	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AB987_3484	COG4773	Receptor
AB987_3487	COG0730	response to heat
AB987_3488	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AB987_3491	COG0406	alpha-ribazole phosphatase activity
AB987_3492	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AB987_3503	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AB987_3505	COG4264	IucA IucC family
AB987_3506	COG4264	IucA IucC family
AB987_3507	COG2814	Major facilitator Superfamily
AB987_3510	COG4264	IucA IucC family
AB987_3511	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AB987_3514	COG1960	acyl-CoA dehydrogenase activity
AB987_3515	COG1960	acyl-CoA dehydrogenase activity
AB987_3516	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AB987_3517	COG2207	Transcriptional regulator
AB987_3518	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AB987_3519	COG0776	regulation of translation
AB987_3524	COG0822	iron-sulfur transferase activity
AB987_3525	COG0316	Belongs to the HesB IscA family
AB987_3531	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AB987_3535	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AB987_3536	COG0702	epimerase
AB987_3546	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AB987_3548	COG0339	signal peptide processing
AB987_3557	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AB987_3558	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AB987_3563	COG2072	flavoprotein involved in K transport
AB987_3564	COG3328	transposase activity
AB987_3568	COG0776	regulation of translation
AB987_3573	COG0590	tRNA wobble adenosine to inosine editing
AB987_3579	COG2165	general secretion pathway protein
AB987_3582	COG0084	hydrolase, TatD family'
AB987_3586	COG1663	tetraacyldisaccharide 4'-kinase activity
AB987_3587	COG1132	(ABC) transporter
AB987_3589	COG0811	peptide transport
AB987_3590	COG1475	DNA binding
AB987_3591	COG1192	Involved in chromosome partitioning
AB987_3593	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AB987_3596	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AB987_3597	COG0191	fructose-bisphosphate aldolase activity
AB987_3601	COG0424	maF-like protein
AB987_3602	COG2850	peptidyl-arginine hydroxylation
AB987_3604	COG0640	Transcriptional regulator
AB987_3606	COG3619	membrane
AB987_3607	COG3122	Protein conserved in bacteria
AB987_3608	COG1132	(ABC) transporter
AB987_3612	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AB987_3613	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AB987_3615	COG0506	proline dehydrogenase activity
AB987_3615	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AB987_3615	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AB987_3616	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AB987_3619	COG3698	Phosphodiester glycosidase
AB987_3621	COG2353	YceI-like domain
AB987_3623	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AB987_3634	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AB987_3634	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AB987_3643	COG2826	transposase and inactivated derivatives, IS30 family
AB987_3644	COG1309	transcriptional regulator
AB987_3649	COG1522	sequence-specific DNA binding
AB987_3651	COG1126	abc transporter atp-binding protein
AB987_3652	COG0765	amino acid transport
AB987_3653	COG0765	amino acid transport
AB987_3660	COG1464	Belongs to the NlpA lipoprotein family
AB987_3663	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AB987_3664	COG2011	ABC-type metal ion transport system permease component
AB987_3665	COG0012	GTP binding
AB987_3670	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AB987_3678	COG0386	Belongs to the glutathione peroxidase family
AB987_3680	COG0436	Aminotransferase
AB987_3688	COG3634	alkyl hydroperoxide reductase activity
AB987_3691	COG0583	DNA-binding transcription factor activity
AB987_3692	COG0798	PFAM Bile acid sodium symporter
AB987_3693	COG0640	Transcriptional regulator
AB987_3696	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AB987_3699	COG2826	transposase and inactivated derivatives, IS30 family
AB987_3702	COG1953	Uracil, thiamine, allantoin
AB987_3704	COG2175	clavaminate synthase activity
AB987_3705	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB987_3706	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AB987_3707	COG4521	taurine ABC transporter
AB987_3709	COG0477	Major facilitator Superfamily
AB987_3714	COG1271	oxidase subunit
AB987_3715	COG1294	oxidase, subunit
AB987_3717	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB987_3721	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AB987_3725	COG3052	prosthetic group binding
AB987_3726	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
AB987_3728	COG0583	DNA-binding transcription factor activity
AB987_3730	COG2814	Major facilitator Superfamily
AB987_3734	COG1346	cytolysis
AB987_3736	COG0583	DNA-binding transcription factor activity
AB987_3737	COG0625	glutathione transferase activity
AB987_3738	COG0625	glutathione transferase activity
AB987_3739	COG0583	DNA-binding transcription factor activity
AB987_3740	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_3742	COG1045	serine acetyltransferase
AB987_3743	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AB987_3744	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AB987_3745	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AB987_3746	COG1280	lysine exporter protein (LysE YggA)
AB987_3750	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AB987_3751	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AB987_3752	COG1126	abc transporter atp-binding protein
AB987_3753	COG0765	amino acid transport
AB987_3754	COG0765	amino acid transport
AB987_3761	COG0784	Response regulator, receiver
AB987_3761	COG2205	protein histidine kinase activity
AB987_3765	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AB987_3770	COG1028	Short-chain dehydrogenase reductase Sdr
AB987_3780	COG0583	DNA-binding transcription factor activity
AB987_3787	COG0753	catalase activity
AB987_3809	COG1253	flavin adenine dinucleotide binding
AB987_3810	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system