locus-tag	class	description
AB895_0028	COG5410	chromosome segregation
AB895_0062	COG0069	glutamate synthase activity
AB895_0066	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AB895_0068	COG1454	alcohol dehydrogenase
AB895_0069	COG0824	Thioesterase
AB895_0073	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AB895_0079	COG0183	Belongs to the thiolase family
AB895_0081	COG0583	DNA-binding transcription factor activity
AB895_0084	COG1522	sequence-specific DNA binding
AB895_0085	COG3135	benzoate transporter
AB895_0087	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AB895_0091	COG0589	response to stress
AB895_0092	COG0488	(ABC) transporter
AB895_0096	COG4773	Receptor
AB895_0102	COG0668	transmembrane transport
AB895_0104	COG1309	transcriptional regulator
AB895_0107	COG1605	Chorismate mutase
AB895_0113	COG3293	Transposase
AB895_0117	COG0308	aminopeptidase N
AB895_0121	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AB895_0123	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AB895_0124	COG1454	alcohol dehydrogenase
AB895_0128	COG0531	amino acid
AB895_0129	COG4303	Ethanolamine ammonia lyase large subunit
AB895_0130	COG4302	ethanolamine ammonia-lyase activity
AB895_0131	COG0519	Catalyzes the synthesis of GMP from XMP
AB895_0131	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AB895_0138	COG0697	spore germination
AB895_0139	COG1923	regulation of RNA biosynthetic process
AB895_0141	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AB895_0142	COG0802	atpase or kinase
AB895_0146	COG1187	pseudouridine synthase activity
AB895_0150	COG0583	DNA-binding transcription factor activity
AB895_0153	COG2814	Major facilitator Superfamily
AB895_0154	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AB895_0159	COG0729	surface antigen
AB895_0163	COG0174	glutamine synthetase
AB895_0164	COG0745	RESPONSE REGULATOR receiver
AB895_0165	COG2205	protein histidine kinase activity
AB895_0167	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AB895_0168	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AB895_0173	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_0174	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AB895_0175	COG1960	acyl-CoA dehydrogenase activity
AB895_0181	COG0583	DNA-binding transcription factor activity
AB895_0184	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB895_0186	COG3658	cytochrome
AB895_0187	COG1215	transferase activity, transferring glycosyl groups
AB895_0188	COG0726	polysaccharide deacetylase
AB895_0188	COG1649	PFAM Uncharacterised BCR, COG1649
AB895_0193	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AB895_0194	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AB895_0196	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AB895_0201	COG0305	Participates in initiation and elongation during chromosome replication
AB895_0202	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AB895_0204	COG1305	Transglutaminase-like
AB895_0206	COG2308	Evidence 4 Homologs of previously reported genes of
AB895_0212	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AB895_0213	COG0138	bifunctional purine biosynthesis protein purh
AB895_0214	COG0151	Belongs to the GarS family
AB895_0215	COG1464	Belongs to the NlpA lipoprotein family
AB895_0216	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AB895_0217	COG2011	ABC-type metal ion transport system permease component
AB895_0218	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB895_0220	COG1301	dicarboxylic acid transport
AB895_0226	COG1794	racemase activity, acting on amino acids and derivatives
AB895_0228	COG3008	intermembrane lipid transfer
AB895_0228	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AB895_0229	COG2995	paraquat-inducible protein a
AB895_0234	COG0477	Major facilitator Superfamily
AB895_0245	COG2186	Transcriptional regulator
AB895_0247	COG0786	glutamate:sodium symporter activity
AB895_0248	COG3243	poly(R)-hydroxyalkanoic acid synthase
AB895_0253	COG3111	PFAM Bacterial OB fold (BOF) protein
AB895_0268	COG0515	serine threonine protein kinase
AB895_0273	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AB895_0274	COG1610	YqeY-like protein
AB895_0275	COG4783	chaperone-mediated protein folding
AB895_0286	COG0778	Nitroreductase
AB895_0288	COG0513	Belongs to the DEAD box helicase family
AB895_0292	COG2363	Small membrane protein
AB895_0298	COG1234	tRNA 3'-trailer cleavage
AB895_0299	COG2195	Cleaves the N-terminal amino acid of tripeptides
AB895_0301	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AB895_0304	COG1960	acyl-CoA dehydrogenase activity
AB895_0305	COG1301	dicarboxylic acid transport
AB895_0306	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AB895_0307	COG3139	Protein of unknown function (DUF1315)
AB895_0308	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AB895_0309	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AB895_0311	COG0494	nUDIX hydrolase
AB895_0313	COG0642	Histidine kinase
AB895_0314	COG0745	RESPONSE REGULATOR receiver
AB895_0318	COG1720	tRNA m6t6A37 methyltransferase activity
AB895_0321	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB895_0325	COG4598	ABC transporter
AB895_0326	COG4160	amino acid transport
AB895_0327	COG4215	(ABC) transporter
AB895_0331	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB895_0333	COG1538	Outer membrane efflux protein
AB895_0340	COG1131	(ABC) transporter
AB895_0341	COG0842	Transport permease protein
AB895_0344	COG0772	Belongs to the SEDS family
AB895_0345	COG2951	lytic endotransglycosylase activity
AB895_0349	COG2207	Transcriptional regulator
AB895_0352	COG0052	Belongs to the universal ribosomal protein uS2 family
AB895_0353	COG0024	Methionine aminopeptidase
AB895_0355	COG2223	nitrite transmembrane transporter activity
AB895_0358	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AB895_0359	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AB895_0360	COG1960	acyl-CoA dehydrogenase activity
AB895_0363	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AB895_0364	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AB895_0365	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AB895_0369	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AB895_0370	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AB895_0371	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AB895_0378	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AB895_0381	COG3104	oligopeptide transport
AB895_0383	COG0512	Glutamine amidotransferase of anthranilate synthase
AB895_0384	COG0308	aminopeptidase N
AB895_0390	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AB895_0396	COG3739	integral membrane protein
AB895_0399	COG1169	isochorismate synthase
AB895_0404	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
AB895_0406	COG1132	(ABC) transporter
AB895_0409	COG3433	isochorismatase activity
AB895_0409	COG1535	isochorismatase
AB895_0410	COG1021	2,3-dihydroxybenzoate-AMP ligase
AB895_0411	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB895_0413	COG4774	siderophore transport
AB895_0414	COG4607	ABC-type enterochelin transport system periplasmic component
AB895_0415	COG4604	ABC transporter, ATP-binding protein
AB895_0416	COG4605	iron ion homeostasis
AB895_0417	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AB895_0419	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB895_0422	COG2964	Protein conserved in bacteria
AB895_0424	COG1741	Belongs to the pirin family
AB895_0427	COG2879	small protein
AB895_0428	COG1966	Carbon starvation protein
AB895_0432	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AB895_0438	COG1067	ATP-dependent peptidase activity
AB895_0439	COG0583	DNA-binding transcription factor activity
AB895_0444	COG1686	Belongs to the peptidase S11 family
AB895_0445	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AB895_0452	COG0616	signal peptide processing
AB895_0453	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AB895_0455	COG0573	inorganic phosphate transmembrane transporter activity
AB895_0456	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AB895_0457	COG1113	amino acid transport
AB895_0458	COG3961	Belongs to the TPP enzyme family
AB895_0459	COG1522	sequence-specific DNA binding
AB895_0461	COG0076	glutamate decarboxylase activity
AB895_0462	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AB895_0465	COG2249	NAD(P)H dehydrogenase (quinone) activity
AB895_0467	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB895_0475	COG0352	thiamine-phosphate diphosphorylase activity
AB895_0480	COG0612	Peptidase, M16
AB895_0483	COG0583	DNA-binding transcription factor activity
AB895_0484	COG0477	Major facilitator Superfamily
AB895_0489	COG1187	pseudouridine synthase activity
AB895_0492	COG1686	Belongs to the peptidase S11 family
AB895_0493	COG1252	NADH dehydrogenase
AB895_0495	COG0415	Belongs to the DNA photolyase family
AB895_0498	COG1215	transferase activity, transferring glycosyl groups
AB895_0504	COG2070	2-Nitropropane dioxygenase
AB895_0515	COG0556	nucleotide-excision repair
AB895_0524	COG4221	oxidoreductase activity
AB895_0526	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AB895_0527	COG1381	Involved in DNA repair and RecF pathway recombination
AB895_0529	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AB895_0532	COG0681	Belongs to the peptidase S26 family
AB895_0534	COG3328	transposase activity
AB895_0536	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AB895_0540	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AB895_0541	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AB895_0542	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AB895_0545	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AB895_0546	COG4208	sulfate ABC transporter
AB895_0547	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AB895_0548	COG0583	DNA-binding transcription factor activity
AB895_0549	COG4625	pathogenesis
AB895_0552	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AB895_0555	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AB895_0557	COG1051	belongs to the nudix hydrolase family
AB895_0557	COG1056	cytidyltransferase-related domain
AB895_0558	COG1024	Enoyl-CoA hydratase
AB895_0559	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AB895_0561	COG2814	Major facilitator Superfamily
AB895_0562	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AB895_0562	COG0047	phosphoribosylformylglycinamidine synthase activity
AB895_0566	COG3293	Transposase
AB895_0567	COG1473	amidohydrolase
AB895_0568	COG0824	Thioesterase
AB895_0572	COG0823	Involved in the tonB-independent uptake of proteins
AB895_0576	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AB895_0583	COG0628	permease
AB895_0585	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AB895_0586	COG0596	Alpha beta hydrolase
AB895_0587	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AB895_0587	COG0616	signal peptide processing
AB895_0589	COG2333	competence protein COMEC
AB895_0589	COG0658	competence protein
AB895_0590	COG1136	(ABC) transporter
AB895_0591	COG4591	ABC-type transport system involved in lipoprotein release permease component
AB895_0597	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB895_0601	COG0463	Glycosyl transferase, family 2
AB895_0607	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AB895_0608	COG1280	lysine exporter protein (LysE YggA)
AB895_0609	COG2267	carboxylic ester hydrolase activity
AB895_0611	COG0019	diaminopimelate decarboxylase activity
AB895_0613	COG1113	amino acid transport
AB895_0617	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AB895_0619	COG3339	Conserved Protein
AB895_0620	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AB895_0621	COG0243	molybdopterin cofactor binding
AB895_0622	COG1929	Belongs to the glycerate kinase type-1 family
AB895_0625	COG0778	Nitroreductase
AB895_0630	COG3811	Belongs to the UPF0386 family
AB895_0632	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB895_0635	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AB895_0639	COG0741	lytic transglycosylase activity
AB895_0643	COG0584	glycerophosphoryl diester phosphodiesterase
AB895_0648	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AB895_0652	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AB895_0653	COG0477	Major facilitator Superfamily
AB895_0663	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AB895_0664	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AB895_0669	COG0505	Belongs to the CarA family
AB895_0673	COG0589	response to stress
AB895_0676	COG2843	Capsule synthesis protein
AB895_0680	COG2321	neutral zinc metallopeptidase
AB895_0681	COG2354	Protein conserved in bacteria
AB895_0685	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AB895_0688	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AB895_0689	COG1053	succinate dehydrogenase
AB895_0690	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AB895_0691	COG2009	succinate dehydrogenase
AB895_0699	COG2921	Belongs to the UPF0250 family
AB895_0700	COG0321	lipoyl(octanoyl) transferase activity
AB895_0703	COG0531	amino acid
AB895_0705	COG1733	regulation of RNA biosynthetic process
AB895_0706	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AB895_0707	COG1648	precorrin-2 dehydrogenase activity
AB895_0707	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AB895_0710	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AB895_0716	COG0671	phosphoesterase, PA-phosphatase related
AB895_0717	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB895_0719	COG1538	Outer membrane efflux protein
AB895_0720	COG0393	Putative heavy-metal-binding
AB895_0721	COG0393	Putative heavy-metal-binding
AB895_0723	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_0725	COG0525	valine-tRNA ligase activity
AB895_0729	COG0583	DNA-binding transcription factor activity
AB895_0730	COG0004	ammonium transporteR
AB895_0732	COG0642	Histidine kinase
AB895_0733	COG0745	RESPONSE REGULATOR receiver
AB895_0734	COG2194	sulfuric ester hydrolase activity
AB895_0738	COG1752	Esterase of the alpha-beta hydrolase superfamily
AB895_0741	COG2315	Protein conserved in bacteria
AB895_0742	COG0142	geranyltranstransferase activity
AB895_0743	COG2828	Protein conserved in bacteria
AB895_0744	COG1113	amino acid transport
AB895_0748	COG2207	Transcriptional regulator
AB895_0753	COG2249	NAD(P)H dehydrogenase (quinone) activity
AB895_0757	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB895_0759	COG1530	ribonuclease E activity
AB895_0760	COG0424	maF-like protein
AB895_0762	COG1792	Involved in formation and maintenance of cell shape
AB895_0763	COG1077	Cell shape determining protein MreB Mrl
AB895_0764	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AB895_0766	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AB895_0773	COG3590	peptidase
AB895_0774	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AB895_0775	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AB895_0776	COG1752	Esterase of the alpha-beta hydrolase superfamily
AB895_0777	COG1115	amino acid carrier protein
AB895_0781	COG2814	Major facilitator Superfamily
AB895_0782	COG1289	transmembrane transporter activity
AB895_0792	COG1376	ErfK ybiS ycfS ynhG family protein
AB895_0793	COG2832	Protein of unknown function (DUF454)
AB895_0795	COG5510	response to toxic substance
AB895_0799	COG0840	transmembrane signaling receptor activity
AB895_0808	COG3422	double-strand break repair
AB895_0809	COG2824	Alkylphosphonate utilization operon protein PhnA
AB895_0810	COG3189	MarR family transcriptional regulator
AB895_0811	COG0596	Alpha beta hydrolase
AB895_0812	COG0778	Nitroreductase
AB895_0813	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB895_0814	COG1335	isochorismatase
AB895_0815	COG0251	oxidation-reduction process
AB895_0816	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_0817	COG2233	PERMEase
AB895_0820	COG0354	folic acid binding
AB895_0821	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AB895_0823	COG0679	Auxin Efflux Carrier
AB895_0824	COG1902	pentaerythritol trinitrate reductase activity
AB895_0825	COG4772	TonB-dependent receptor
AB895_0826	COG2094	Belongs to the DNA glycosylase MPG family
AB895_0833	COG2233	PERMEase
AB895_0835	COG0833	amino acid
AB895_0836	COG1690	Belongs to the RtcB family
AB895_0838	COG2885	chlorophyll binding
AB895_0838	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AB895_0840	COG0183	Belongs to the thiolase family
AB895_0844	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB895_0849	COG2207	Transcriptional regulator
AB895_0850	COG0183	Belongs to the thiolase family
AB895_0854	COG2153	protein acetylation
AB895_0856	COG1272	protein, Hemolysin III
AB895_0857	COG0477	Major facilitator Superfamily
AB895_0860	COG0450	alkyl hydroperoxide reductase
AB895_0864	COG0285	dihydrofolate synthase activity
AB895_0872	COG0133	tryptophan synthase activity
AB895_0875	COG2096	Adenosyltransferase
AB895_0879	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AB895_0880	COG0745	RESPONSE REGULATOR receiver
AB895_0881	COG2205	protein histidine kinase activity
AB895_0883	COG1960	acyl-CoA dehydrogenase activity
AB895_0884	COG1960	acyl-CoA dehydrogenase activity
AB895_0895	COG1215	transferase activity, transferring glycosyl groups
AB895_0898	COG1091	dTDP-4-dehydrorhamnose reductase activity
AB895_0901	COG0438	transferase activity, transferring glycosyl groups
AB895_0902	COG0726	polysaccharide deacetylase
AB895_0905	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AB895_0906	COG2205	protein histidine kinase activity
AB895_0909	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AB895_0912	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AB895_0916	COG0732	type I restriction modification DNA specificity domain
AB895_0917	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AB895_0923	COG3328	transposase activity
AB895_0924	COG0582	viral genome integration into host DNA
AB895_0931	COG1862	Preprotein translocase
AB895_0933	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AB895_0934	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AB895_0936	COG3781	membrane
AB895_0937	COG0613	PHP domain protein
AB895_0939	COG2350	Protein conserved in bacteria
AB895_0945	COG1607	acyl-coa hydrolase
AB895_0948	COG3453	Protein conserved in bacteria
AB895_0948	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB895_0958	COG2199	diguanylate cyclase activity
AB895_0960	COG1408	metallophosphoesterase
AB895_0961	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AB895_0963	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AB895_0967	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AB895_0968	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AB895_0971	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AB895_0973	COG2969	positive regulation of protein catabolic process
AB895_0977	COG1960	acyl-CoA dehydrogenase activity
AB895_0978	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AB895_0983	COG1309	transcriptional regulator
AB895_0984	COG1960	acyl-CoA dehydrogenase activity
AB895_0994	COG1183	phosphatidylcholine synthase activity
AB895_0995	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AB895_1001	COG0739	heme binding
AB895_1001	COG1196	nuclear chromosome segregation
AB895_1001	COG0741	lytic transglycosylase activity
AB895_1003	COG1702	phosphate starvation-inducible protein PhoH
AB895_1010	COG1295	ribonuclease BN
AB895_1011	COG0697	spore germination
AB895_1012	COG2169	Transcriptional regulator
AB895_1013	COG0179	Fumarylacetoacetate (FAA) hydrolase
AB895_1022	COG0557	exoribonuclease II activity
AB895_1023	COG0339	signal peptide processing
AB895_1024	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AB895_1030	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AB895_1031	COG1960	acyl-CoA dehydrogenase activity
AB895_1037	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AB895_1039	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AB895_1063	COG0626	cystathionine gamma-synthase activity
AB895_1064	COG0433	COG0433 Predicted ATPase
AB895_1065	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB895_1065	COG1017	nitric oxide dioxygenase activity
AB895_1066	COG1959	2 iron, 2 sulfur cluster binding
AB895_1069	COG1301	dicarboxylic acid transport
AB895_1070	COG1946	Acyl-CoA thioesterase
AB895_1074	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AB895_1075	COG1040	competence protein
AB895_1076	COG0494	nUDIX hydrolase
AB895_1078	COG0598	Magnesium transport protein CorA
AB895_1080	COG2854	intermembrane phospholipid transfer
AB895_1082	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AB895_1083	COG1127	ABC transporter
AB895_1085	COG0513	Belongs to the DEAD box helicase family
AB895_1089	COG0408	coproporphyrinogen oxidase activity
AB895_1092	COG1960	acyl-CoA dehydrogenase activity
AB895_1094	COG1983	PspC domain protein
AB895_1095	COG0517	IMP dehydrogenase activity
AB895_1102	COG1106	Psort location Cytoplasmic, score
AB895_1106	COG0583	DNA-binding transcription factor activity
AB895_1117	COG1012	belongs to the aldehyde dehydrogenase family
AB895_1119	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AB895_1120	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AB895_1122	COG0833	amino acid
AB895_1128	COG1192	Involved in chromosome partitioning
AB895_1129	COG0628	permease
AB895_1131	COG1289	transmembrane transporter activity
AB895_1134	COG2249	NAD(P)H dehydrogenase (quinone) activity
AB895_1135	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AB895_1137	COG0277	FAD linked oxidase domain protein
AB895_1138	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AB895_1145	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AB895_1146	COG5380	lipid catabolic process
AB895_1150	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AB895_1160	COG0194	GDP metabolic process
AB895_1162	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AB895_1166	COG3307	-O-antigen
AB895_1171	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AB895_1172	COG1704	LemA family
AB895_1174	COG0493	'glutamate synthase
AB895_1175	COG0067	glutamate synthase
AB895_1175	COG0070	glutamate synthase
AB895_1175	COG0069	glutamate synthase activity
AB895_1185	COG2226	methyltransferase
AB895_1188	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AB895_1189	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AB895_1198	COG0833	amino acid
AB895_1212	COG0488	(ABC) transporter
AB895_1214	COG4221	oxidoreductase activity
AB895_1215	COG0659	secondary active sulfate transmembrane transporter activity
AB895_1217	COG0745	RESPONSE REGULATOR receiver
AB895_1219	COG0427	acetyl-CoA hydrolase
AB895_1225	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AB895_1231	COG2329	Antibiotic biosynthesis monooxygenase
AB895_1234	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AB895_1238	COG3293	Transposase
AB895_1249	COG0582	viral genome integration into host DNA
AB895_1250	COG0582	viral genome integration into host DNA
AB895_1265	COG0667	Aldo Keto reductase
AB895_1269	COG0583	DNA-binding transcription factor activity
AB895_1270	COG2814	Major facilitator Superfamily
AB895_1277	COG1335	isochorismatase
AB895_1279	COG1012	belongs to the aldehyde dehydrogenase family
AB895_1280	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AB895_1282	COG1113	amino acid transport
AB895_1284	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AB895_1287	COG2814	Major facilitator Superfamily
AB895_1289	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AB895_1289	COG0351	phosphomethylpyrimidine kinase
AB895_1289	COG0352	thiamine-phosphate diphosphorylase activity
AB895_1293	COG1309	transcriptional regulator
AB895_1294	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AB895_1295	COG3706	GGDEF domain
AB895_1297	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AB895_1299	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AB895_1300	COG3162	membrane
AB895_1301	COG2205	protein histidine kinase activity
AB895_1301	COG0784	Response regulator, receiver
AB895_1301	COG2198	Histidine kinase
AB895_1306	COG1522	sequence-specific DNA binding
AB895_1307	COG1335	isochorismatase
AB895_1308	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AB895_1311	COG0668	transmembrane transport
AB895_1312	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AB895_1313	COG1519	Transferase
AB895_1314	COG1902	pentaerythritol trinitrate reductase activity
AB895_1319	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AB895_1324	COG0426	domain, Protein
AB895_1324	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_1325	COG2119	membrane
AB895_1327	COG0508	dehydrogenase complex catalyzes the overall conversion of
AB895_1329	COG4942	peptidase
AB895_1332	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AB895_1334	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AB895_1338	COG0189	ligase activity
AB895_1344	COG0708	Exodeoxyribonuclease III
AB895_1345	COG1393	Belongs to the ArsC family
AB895_1348	COG3706	GGDEF domain
AB895_1355	COG2351	hydroxyisourate hydrolase activity
AB895_1356	COG2233	PERMEase
AB895_1358	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB895_1360	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
AB895_1361	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_1364	COG3150	esterase
AB895_1372	COG3501	Rhs element vgr protein
AB895_1374	COG2918	glutathione biosynthetic process
AB895_1377	COG2733	membrane
AB895_1378	COG0436	Aminotransferase
AB895_1379	COG0534	Mate efflux family protein
AB895_1389	COG0753	catalase activity
AB895_1393	COG3830	Belongs to the UPF0237 family
AB895_1393	COG0560	Phosphoserine phosphatase
AB895_1398	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AB895_1400	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AB895_1402	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AB895_1409	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AB895_1410	COG0010	Belongs to the arginase family
AB895_1416	COG2188	Transcriptional regulator
AB895_1418	COG0523	cobalamin synthesis protein
AB895_1420	COG1113	amino acid transport
AB895_1422	COG0625	glutathione transferase activity
AB895_1426	COG1683	Conserved Protein
AB895_1427	COG0534	Mate efflux family protein
AB895_1428	COG0385	Bile acid
AB895_1429	COG1335	isochorismatase
AB895_1430	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB895_1434	COG2116	formate transmembrane transporter activity
AB895_1435	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AB895_1436	COG2133	pyrroloquinoline quinone binding
AB895_1437	COG2983	Belongs to the UPF0260 family
AB895_1442	COG1194	a g-specific adenine glycosylase
AB895_1445	COG2818	Glycosylase
AB895_1446	COG1064	alcohol dehydrogenase
AB895_1447	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB895_1449	COG2814	Major facilitator Superfamily
AB895_1456	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB895_1459	COG2233	PERMEase
AB895_1460	COG0583	DNA-binding transcription factor activity
AB895_1465	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AB895_1467	COG0733	neurotransmitter:sodium symporter activity
AB895_1477	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AB895_1483	COG0583	DNA-binding transcription factor activity
AB895_1489	COG2951	lytic endotransglycosylase activity
AB895_1490	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AB895_1494	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AB895_1496	COG0671	phosphoesterase, PA-phosphatase related
AB895_1497	COG0861	Integral membrane protein TerC family
AB895_1499	COG0754	glutathionylspermidine amidase activity
AB895_1501	COG0402	S-adenosylhomocysteine deaminase activity
AB895_1505	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AB895_1506	COG1230	cation diffusion facilitator family transporter
AB895_1509	COG0706	membrane insertase activity
AB895_1512	COG0230	Belongs to the bacterial ribosomal protein bL34 family
AB895_1514	COG0592	DNA-directed DNA polymerase activity
AB895_1516	COG0187	DNA topoisomerase II activity
AB895_1518	COG0586	Pfam SNARE associated Golgi protein
AB895_1519	COG0488	(ABC) transporter
AB895_1524	COG0596	Alpha beta hydrolase
AB895_1525	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AB895_1526	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AB895_1535	COG1047	Peptidyl-prolyl cis-trans
AB895_1537	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AB895_1538	COG0196	riboflavin kinase activity
AB895_1540	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AB895_1541	COG1309	transcriptional regulator
AB895_1542	COG1116	anion transmembrane transporter activity
AB895_1543	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB895_1544	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB895_1545	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB895_1546	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB895_1550	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_1551	COG0546	phosphoglycolate phosphatase activity
AB895_1562	COG3023	N-Acetylmuramoyl-L-alanine amidase
AB895_1563	COG0728	peptidoglycan biosynthetic process
AB895_1568	COG1596	polysaccharide export
AB895_1569	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AB895_1571	COG1091	dTDP-4-dehydrorhamnose reductase activity
AB895_1572	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AB895_1574	COG2244	polysaccharide biosynthetic process
AB895_1575	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AB895_1580	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AB895_1581	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AB895_1586	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AB895_1588	COG2186	Transcriptional regulator
AB895_1590	COG0277	FAD linked oxidase domain protein
AB895_1591	COG1448	Aminotransferase
AB895_1593	COG1802	Transcriptional regulator
AB895_1596	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AB895_1603	COG0564	pseudouridine synthase activity
AB895_1608	COG1522	sequence-specific DNA binding
AB895_1611	COG0251	oxidation-reduction process
AB895_1612	COG1113	amino acid transport
AB895_1613	COG1113	amino acid transport
AB895_1614	COG1113	amino acid transport
AB895_1621	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AB895_1624	COG3756	Protein conserved in bacteria
AB895_1631	COG0271	Belongs to the BolA IbaG family
AB895_1633	COG1192	Involved in chromosome partitioning
AB895_1636	COG0586	Pfam SNARE associated Golgi protein
AB895_1637	COG2259	Doxx family
AB895_1638	COG4399	Belongs to the UPF0754 family
AB895_1639	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AB895_1639	COG0519	Catalyzes the synthesis of GMP from XMP
AB895_1648	COG0281	malic enzyme
AB895_1649	COG2837	iron assimilation
AB895_1650	COG1280	lysine exporter protein (LysE YggA)
AB895_1651	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AB895_1652	COG1121	(ABC) transporter
AB895_1665	COG0386	Belongs to the glutathione peroxidase family
AB895_1668	COG1309	transcriptional regulator
AB895_1669	COG0697	spore germination
AB895_1671	COG0758	DNA mediated transformation
AB895_1678	COG1309	transcriptional regulator
AB895_1688	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AB895_1690	COG0655	NAD(P)H dehydrogenase (quinone) activity
AB895_1697	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AB895_1699	COG0477	Major facilitator Superfamily
AB895_1701	COG1253	flavin adenine dinucleotide binding
AB895_1703	COG2860	membrane
AB895_1704	COG0477	Major facilitator Superfamily
AB895_1706	COG0318	PFAM AMP-dependent synthetase and ligase
AB895_1709	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AB895_1713	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB895_1715	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB895_1716	COG0606	chelatase, subunit chli
AB895_1718	COG0347	Belongs to the P(II) protein family
AB895_1719	COG0004	ammonium transporteR
AB895_1721	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AB895_1721	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AB895_1729	COG0795	lipopolysaccharide-transporting ATPase activity
AB895_1730	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AB895_1731	COG0793	Belongs to the peptidase S41A family
AB895_1734	COG2197	response regulator
AB895_1736	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AB895_1738	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AB895_1739	COG4974	Belongs to the 'phage' integrase family
AB895_1744	COG0772	Belongs to the SEDS family
AB895_1745	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AB895_1746	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AB895_1747	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AB895_1752	COG0697	spore germination
AB895_1753	COG1538	Outer membrane efflux protein
AB895_1757	COG3275	phosphorelay sensor kinase activity
AB895_1759	COG0181	hydroxymethylbilane synthase activity
AB895_1768	COG1716	ATPase activity
AB895_1769	COG0546	phosphoglycolate phosphatase activity
AB895_1788	COG0596	Alpha beta hydrolase
AB895_1789	COG2056	Na+-H+ antiporter family
AB895_1792	COG0326	Molecular chaperone. Has ATPase activity
AB895_1795	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AB895_1807	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AB895_1808	COG2169	Transcriptional regulator
AB895_1808	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AB895_1814	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AB895_1816	COG0497	DNA recombination
AB895_1819	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AB895_1821	COG0237	dephospho-CoA kinase activity
AB895_1831	COG0195	Participates in both transcription termination and antitermination
AB895_1835	COG2212	antiporter activity
AB895_1837	COG0651	ATP synthesis coupled electron transport
AB895_1838	COG1006	Multisubunit Na H antiporter MnhC subunit
AB895_1839	COG2111	Na H antiporter
AB895_1839	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AB895_1842	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AB895_1845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB895_1848	COG2226	methyltransferase
AB895_1852	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AB895_1853	COG1074	ATP-dependent DNA helicase activity
AB895_1854	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AB895_1858	COG0598	Magnesium transport protein CorA
AB895_1859	COG0789	Transcriptional regulator
AB895_1860	COG0484	heat shock protein binding
AB895_1863	COG0475	glutathione-regulated potassium exporter activity
AB895_1863	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AB895_1864	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AB895_1868	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AB895_1870	COG4535	Mg2 and Co2 transporter CorC
AB895_1871	COG0425	Belongs to the sulfur carrier protein TusA family
AB895_1873	COG0644	oxidoreductase
AB895_1873	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AB895_1875	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AB895_1879	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB895_1880	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AB895_1898	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AB895_1901	COG0534	Mate efflux family protein
AB895_1903	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AB895_1904	COG4221	oxidoreductase activity
AB895_1905	COG0583	DNA-binding transcription factor activity
AB895_1909	COG1530	ribonuclease E activity
AB895_1912	COG0546	phosphoglycolate phosphatase activity
AB895_1913	COG2378	regulation of single-species biofilm formation
AB895_1914	COG0625	glutathione transferase activity
AB895_1916	COG0583	DNA-binding transcription factor activity
AB895_1930	COG0473	3-isopropylmalate dehydrogenase activity
AB895_1941	COG1301	dicarboxylic acid transport
AB895_1943	COG1560	Kdo2-lipid A biosynthetic process
AB895_1944	COG1280	lysine exporter protein (LysE YggA)
AB895_1949	COG1733	regulation of RNA biosynthetic process
AB895_1954	COG0210	DNA helicase
AB895_1955	COG0724	RNA recognition motif
AB895_1959	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AB895_1959	COG4651	solute:proton antiporter activity
AB895_1960	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AB895_1961	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AB895_1964	COG0788	formyltetrahydrofolate deformylase activity
AB895_1995	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AB895_1995	COG2813	Specifically methylates the guanine in position
AB895_1997	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AB895_1999	COG4774	siderophore transport
AB895_2001	COG0740	serine-type endopeptidase activity
AB895_2005	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AB895_2005	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AB895_2006	COG3328	transposase activity
AB895_2007	COG0857	belongs to the CobB CobQ family
AB895_2007	COG0280	phosphate acetyltransferase
AB895_2008	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AB895_2010	COG0800	Aldolase
AB895_2012	COG3265	gluconokinase activity
AB895_2013	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2015	COG2267	carboxylic ester hydrolase activity
AB895_2018	COG0793	Belongs to the peptidase S41A family
AB895_2025	COG1426	Protein conserved in bacteria
AB895_2033	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AB895_2035	COG1162	GTPase activity
AB895_2036	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AB895_2039	COG1538	Outer membrane efflux protein
AB895_2040	COG1136	(ABC) transporter
AB895_2040	COG0577	efflux transmembrane transporter activity
AB895_2041	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB895_2046	COG0028	Belongs to the TPP enzyme family
AB895_2047	COG0440	acetolactate synthase activity
AB895_2051	COG2801	Transposase and inactivated derivatives
AB895_2061	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AB895_2064	COG0084	hydrolase, TatD family'
AB895_2067	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AB895_2069	COG0583	DNA-binding transcription factor activity
AB895_2071	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AB895_2084	COG2205	protein histidine kinase activity
AB895_2087	COG2132	Multicopper oxidase
AB895_2090	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AB895_2099	COG2814	Major facilitator Superfamily
AB895_2101	COG0697	spore germination
AB895_2102	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AB895_2103	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AB895_2104	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AB895_2109	COG3622	Belongs to the hyi family
AB895_2110	COG2084	Dehydrogenase
AB895_2111	COG1024	Enoyl-CoA hydratase
AB895_2112	COG5002	protein histidine kinase activity
AB895_2112	COG2205	protein histidine kinase activity
AB895_2112	COG0784	Response regulator, receiver
AB895_2116	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AB895_2118	COG3956	TIGRFAM MazG family protein
AB895_2119	COG1555	photosystem II stabilization
AB895_2120	COG0617	tRNA 3'-terminal CCA addition
AB895_2121	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AB895_2125	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AB895_2126	COG3028	Belongs to the UPF0307 family
AB895_2127	COG0318	PFAM AMP-dependent synthetase and ligase
AB895_2130	COG0625	glutathione transferase activity
AB895_2131	COG1238	metal cluster binding
AB895_2134	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AB895_2139	COG0072	phenylalanine-tRNA ligase activity
AB895_2145	COG0248	Ppx GppA phosphatase
AB895_2147	COG0037	tRNA processing
AB895_2155	COG1764	response to oxidative stress
AB895_2156	COG1846	Transcriptional regulator
AB895_2158	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AB895_2172	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AB895_2173	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AB895_2174	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AB895_2176	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AB895_2181	COG1214	PFAM Peptidase M22, glycoprotease
AB895_2184	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AB895_2186	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AB895_2187	COG0561	phosphatase activity
AB895_2189	COG2132	Multicopper oxidase
AB895_2193	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AB895_2194	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AB895_2195	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AB895_2201	COG1063	alcohol dehydrogenase
AB895_2202	COG0583	DNA-binding transcription factor activity
AB895_2203	COG1960	acyl-CoA dehydrogenase activity
AB895_2204	COG2814	Major facilitator Superfamily
AB895_2205	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AB895_2207	COG1053	succinate dehydrogenase
AB895_2208	COG0583	DNA-binding transcription factor activity
AB895_2211	COG0583	DNA-binding transcription factor activity
AB895_2213	COG1473	amidohydrolase
AB895_2218	COG0583	DNA-binding transcription factor activity
AB895_2220	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AB895_2221	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_2226	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AB895_2229	COG0745	RESPONSE REGULATOR receiver
AB895_2230	COG2205	protein histidine kinase activity
AB895_2237	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AB895_2243	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AB895_2244	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AB895_2248	COG0583	DNA-binding transcription factor activity
AB895_2252	COG0668	transmembrane transport
AB895_2254	COG2081	HI0933 family
AB895_2255	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AB895_2261	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AB895_2261	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AB895_2263	COG0489	protein tyrosine kinase activity
AB895_2274	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AB895_2276	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AB895_2279	COG0730	response to heat
AB895_2281	COG1196	nuclear chromosome segregation
AB895_2285	COG2223	nitrite transmembrane transporter activity
AB895_2286	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
AB895_2287	COG1877	trehalose-phosphatase activity
AB895_2288	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AB895_2288	COG2226	methyltransferase
AB895_2288	COG0596	Alpha beta hydrolase
AB895_2291	COG4106	trans-aconitate 2-methyltransferase activity
AB895_2294	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AB895_2295	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AB895_2296	COG0009	L-threonylcarbamoyladenylate synthase
AB895_2297	COG3101	peptidyl-lysine hydroxylation
AB895_2298	COG1399	metal-binding, possibly nucleic acid-binding protein
AB895_2303	COG1652	LysM domain
AB895_2304	COG0352	thiamine-phosphate diphosphorylase activity
AB895_2304	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AB895_2304	COG0351	phosphomethylpyrimidine kinase
AB895_2306	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AB895_2312	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AB895_2319	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AB895_2322	COG0358	DNA primase activity
AB895_2324	COG0564	pseudouridine synthase activity
AB895_2329	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AB895_2332	COG0583	DNA-binding transcription factor activity
AB895_2333	COG0473	3-isopropylmalate dehydrogenase activity
AB895_2337	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2341	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AB895_2341	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AB895_2343	COG3328	transposase activity
AB895_2354	COG0456	acetyltransferase
AB895_2356	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AB895_2357	COG0492	ferredoxin-NADP+ reductase activity
AB895_2358	COG1674	ftsk spoiiie
AB895_2358	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AB895_2359	COG1280	lysine exporter protein (LysE YggA)
AB895_2362	COG2894	cell division
AB895_2365	COG0204	Acyl-transferase
AB895_2366	COG2885	chlorophyll binding
AB895_2367	COG0210	DNA helicase
AB895_2369	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AB895_2372	COG0121	glutamine amidotransferase
AB895_2376	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AB895_2377	COG0735	belongs to the Fur family
AB895_2382	COG0420	3'-5' exonuclease activity
AB895_2388	COG1090	epimerase
AB895_2391	COG2050	protein possibly involved in aromatic compounds catabolism
AB895_2393	COG2814	Major facilitator Superfamily
AB895_2394	COG0405	Gamma-glutamyltransferase
AB895_2419	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AB895_2423	COG0582	viral genome integration into host DNA
AB895_2434	COG2801	Transposase and inactivated derivatives
AB895_2436	COG0477	Major facilitator Superfamily
AB895_2437	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB895_2439	COG1595	DNA-templated transcription, initiation
AB895_2451	COG0531	amino acid
AB895_2452	COG2040	homocysteine
AB895_2457	COG1309	transcriptional regulator
AB895_2458	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AB895_2459	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AB895_2461	COG1607	acyl-coa hydrolase
AB895_2463	COG0523	cobalamin synthesis protein
AB895_2466	COG1301	dicarboxylic acid transport
AB895_2467	COG4681	YaeQ
AB895_2469	COG0726	polysaccharide deacetylase
AB895_2469	COG1649	PFAM Uncharacterised BCR, COG1649
AB895_2470	COG1215	transferase activity, transferring glycosyl groups
AB895_2472	COG1024	Enoyl-CoA hydratase
AB895_2475	COG1414	Transcriptional regulator
AB895_2479	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_2482	COG2271	Major facilitator Superfamily
AB895_2484	COG2267	carboxylic ester hydrolase activity
AB895_2485	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_2488	COG0028	Belongs to the TPP enzyme family
AB895_2490	COG0477	Major facilitator Superfamily
AB895_2491	COG0242	peptide deformylase activity
AB895_2492	COG2066	Belongs to the glutaminase family
AB895_2493	COG2207	Transcriptional regulator
AB895_2494	COG2223	nitrite transmembrane transporter activity
AB895_2497	COG0583	DNA-binding transcription factor activity
AB895_2498	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_2499	COG2271	Major facilitator Superfamily
AB895_2500	COG3959	Transketolase, thiamine diphosphate binding domain
AB895_2501	COG3958	Transketolase
AB895_2504	COG0306	phosphate transporter
AB895_2508	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AB895_2518	COG4181	ATPase activity
AB895_2519	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AB895_2524	COG0583	DNA-binding transcription factor activity
AB895_2526	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB895_2527	COG1773	rubredoxin
AB895_2537	COG2851	Citrate transporter
AB895_2538	COG1253	flavin adenine dinucleotide binding
AB895_2548	COG0804	urea catabolic process
AB895_2550	COG0830	nickel cation binding
AB895_2553	COG0742	ribosomal rna small subunit methyltransferase
AB895_2554	COG0768	penicillin binding
AB895_2559	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AB895_2560	COG2878	Part of a membrane complex involved in electron transport
AB895_2561	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AB895_2563	COG3384	dioxygenase
AB895_2568	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AB895_2575	COG0006	proline dipeptidase activity
AB895_2576	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB895_2577	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB895_2582	COG1279	arginine transmembrane transporter activity
AB895_2583	COG0583	DNA-binding transcription factor activity
AB895_2592	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AB895_2593	COG1388	LysM domain
AB895_2593	COG0741	lytic transglycosylase activity
AB895_2595	COG4174	ABC transporter (Permease)
AB895_2596	COG4239	(ABC) transporter, permease
AB895_2597	COG4172	Belongs to the ABC transporter superfamily
AB895_2601	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AB895_2603	COG5001	Diguanylate cyclase
AB895_2603	COG4251	negative regulation of phosphorylation
AB895_2603	COG3706	GGDEF domain
AB895_2603	COG2203	Gaf domain
AB895_2606	COG1902	pentaerythritol trinitrate reductase activity
AB895_2606	COG0446	pyridine nucleotide-disulphide oxidoreductase
AB895_2608	COG0582	viral genome integration into host DNA
AB895_2610	COG3328	transposase activity
AB895_2614	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AB895_2616	COG2072	flavoprotein involved in K transport
AB895_2619	COG0583	DNA-binding transcription factor activity
AB895_2621	COG1126	abc transporter atp-binding protein
AB895_2624	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AB895_2646	COG1309	transcriptional regulator
AB895_2656	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
AB895_2660	COG4993	Dehydrogenase
AB895_2668	COG4269	membrane
AB895_2678	COG1113	amino acid transport
AB895_2680	COG0531	amino acid
AB895_2684	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2688	COG1741	Belongs to the pirin family
AB895_2692	COG2072	flavoprotein involved in K transport
AB895_2694	COG2252	PERMEase
AB895_2695	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AB895_2696	COG3038	cytochrome b561
AB895_2698	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AB895_2733	COG5410	chromosome segregation
AB895_2753	COG1598	PFAM Uncharacterised protein family UPF0150
AB895_2770	COG1278	Cold shock
AB895_2773	COG0582	viral genome integration into host DNA
AB895_2775	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AB895_2777	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AB895_2780	COG0667	Aldo Keto reductase
AB895_2782	COG1765	OsmC-like protein
AB895_2792	COG2885	chlorophyll binding
AB895_2794	COG0625	glutathione transferase activity
AB895_2795	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AB895_2799	COG3634	alkyl hydroperoxide reductase activity
AB895_2801	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AB895_2803	COG0450	alkyl hydroperoxide reductase
AB895_2804	COG1643	Atp-dependent helicase
AB895_2807	COG2814	Major facilitator Superfamily
AB895_2808	COG3135	benzoate transporter
AB895_2809	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_2810	COG0633	Ferredoxin
AB895_2810	COG0543	2 iron, 2 sulfur cluster binding
AB895_2811	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AB895_2812	COG4638	Rieske (2fe-2S)
AB895_2813	COG0583	DNA-binding transcription factor activity
AB895_2823	COG1570	exodeoxyribonuclease VII activity
AB895_2829	COG1280	lysine exporter protein (LysE YggA)
AB895_2830	COG1278	Cold shock
AB895_2836	COG3293	Transposase
AB895_2838	COG2814	Major facilitator Superfamily
AB895_2839	COG1733	regulation of RNA biosynthetic process
AB895_2848	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AB895_2850	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AB895_2851	COG1137	ATPase activity
AB895_2852	COG1538	Outer membrane efflux protein
AB895_2860	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AB895_2864	COG1522	sequence-specific DNA binding
AB895_2865	COG5006	permease, DMT superfamily
AB895_2867	COG1560	Kdo2-lipid A biosynthetic process
AB895_2870	COG2814	Major facilitator Superfamily
AB895_2874	COG1250	3-hydroxyacyl-CoA dehydrogenase
AB895_2881	COG0583	DNA-binding transcription factor activity
AB895_2882	COG1914	H( )-stimulated, divalent metal cation uptake system
AB895_2886	COG4770	biotin carboxylase activity
AB895_2887	COG0038	chloride channel
AB895_2893	COG1063	alcohol dehydrogenase
AB895_2896	COG2807	transmembrane transport
AB895_2899	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AB895_2900	COG0789	Transcriptional regulator
AB895_2902	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AB895_2906	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AB895_2911	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2912	COG0531	amino acid
AB895_2913	COG1760	l-serine dehydratase
AB895_2914	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2914	COG2030	dehydratase
AB895_2915	COG3396	Phenylacetate-CoA oxygenase
AB895_2916	COG3460	Phenylacetate-CoA oxygenase
AB895_2917	COG3396	Phenylacetate-CoA oxygenase
AB895_2918	COG2151	metal-sulfur cluster biosynthetic enzyme
AB895_2919	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB895_2920	COG1024	Enoyl-CoA hydratase
AB895_2921	COG1024	Enoyl-CoA hydratase
AB895_2922	COG1250	3-hydroxyacyl-CoA dehydrogenase
AB895_2923	COG0183	Belongs to the thiolase family
AB895_2924	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
AB895_2925	COG3327	negative regulation of DNA-templated transcription, initiation
AB895_2927	COG2050	protein possibly involved in aromatic compounds catabolism
AB895_2928	COG3209	COG3209 Rhs family protein
AB895_2935	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AB895_2936	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AB895_2937	COG2271	Major facilitator Superfamily
AB895_2938	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AB895_2941	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AB895_2943	COG0531	amino acid
AB895_2944	COG0753	catalase activity
AB895_2945	COG3038	cytochrome b561
AB895_2949	COG2267	carboxylic ester hydrolase activity
AB895_2950	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_2951	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AB895_2952	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2954	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AB895_2956	COG1012	belongs to the aldehyde dehydrogenase family
AB895_2957	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AB895_2958	COG0583	DNA-binding transcription factor activity
AB895_2960	COG1414	Transcriptional regulator
AB895_2961	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AB895_2963	COG1840	ABC-type Fe3 transport system, periplasmic component
AB895_2964	COG3842	ATPase activity
AB895_2967	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AB895_2968	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AB895_2969	COG2814	Major facilitator Superfamily
AB895_2970	COG1960	acyl-CoA dehydrogenase activity
AB895_2973	COG1024	Enoyl-CoA hydratase
AB895_2975	COG2814	Major facilitator Superfamily
AB895_2977	COG0183	Belongs to the thiolase family
AB895_2978	COG1250	3-hydroxyacyl-CoA dehydrogenase
AB895_2979	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_2980	COG1024	Enoyl-CoA hydratase
AB895_2981	COG1960	acyl-CoA dehydrogenase activity
AB895_2982	COG2814	Major facilitator Superfamily
AB895_2983	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AB895_2984	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AB895_2986	COG2814	Major facilitator Superfamily
AB895_2988	COG1960	acyl-CoA dehydrogenase activity
AB895_2991	COG0583	DNA-binding transcription factor activity
AB895_2994	COG1024	Enoyl-CoA hydratase
AB895_2995	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AB895_2996	COG1960	acyl-CoA dehydrogenase activity
AB895_2997	COG1309	transcriptional regulator
AB895_2998	COG0318	PFAM AMP-dependent synthetase and ligase
AB895_3003	COG0583	DNA-binding transcription factor activity
AB895_3013	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3017	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AB895_3021	COG0784	Response regulator, receiver
AB895_3021	COG2205	protein histidine kinase activity
AB895_3024	COG0765	amino acid transport
AB895_3025	COG0765	amino acid transport
AB895_3026	COG1126	abc transporter atp-binding protein
AB895_3027	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AB895_3028	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AB895_3031	COG1280	lysine exporter protein (LysE YggA)
AB895_3032	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AB895_3033	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AB895_3034	COG1045	serine acetyltransferase
AB895_3037	COG0583	DNA-binding transcription factor activity
AB895_3038	COG0625	glutathione transferase activity
AB895_3039	COG0625	glutathione transferase activity
AB895_3040	COG0583	DNA-binding transcription factor activity
AB895_3042	COG1346	cytolysis
AB895_3046	COG2814	Major facilitator Superfamily
AB895_3048	COG0583	DNA-binding transcription factor activity
AB895_3050	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
AB895_3051	COG3052	prosthetic group binding
AB895_3055	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AB895_3059	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB895_3061	COG1294	oxidase, subunit
AB895_3062	COG1271	oxidase subunit
AB895_3067	COG0477	Major facilitator Superfamily
AB895_3069	COG4521	taurine ABC transporter
AB895_3070	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AB895_3071	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB895_3072	COG2175	clavaminate synthase activity
AB895_3074	COG1953	Uracil, thiamine, allantoin
AB895_3076	COG0583	DNA-binding transcription factor activity
AB895_3078	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AB895_3082	COG0640	Transcriptional regulator
AB895_3083	COG0798	PFAM Bile acid sodium symporter
AB895_3084	COG0583	DNA-binding transcription factor activity
AB895_3087	COG3634	alkyl hydroperoxide reductase activity
AB895_3095	COG0436	Aminotransferase
AB895_3097	COG0386	Belongs to the glutathione peroxidase family
AB895_3105	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AB895_3110	COG0012	GTP binding
AB895_3111	COG2011	ABC-type metal ion transport system permease component
AB895_3112	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AB895_3113	COG1464	Belongs to the NlpA lipoprotein family
AB895_3114	COG1464	Belongs to the NlpA lipoprotein family
AB895_3121	COG0765	amino acid transport
AB895_3122	COG0765	amino acid transport
AB895_3123	COG1126	abc transporter atp-binding protein
AB895_3125	COG1522	sequence-specific DNA binding
AB895_3132	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AB895_3137	COG2932	Transcriptional regulator
AB895_3193	COG1309	transcriptional regulator
AB895_3200	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AB895_3202	COG0697	spore germination
AB895_3209	COG3121	Chaperone
AB895_3210	COG3539	Fimbrial protein
AB895_3215	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AB895_3215	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AB895_3226	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AB895_3228	COG2353	YceI-like domain
AB895_3230	COG3698	Phosphodiester glycosidase
AB895_3233	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AB895_3234	COG0506	proline dehydrogenase activity
AB895_3234	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AB895_3234	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AB895_3236	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AB895_3237	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AB895_3241	COG1132	(ABC) transporter
AB895_3242	COG3122	Protein conserved in bacteria
AB895_3243	COG3619	membrane
AB895_3245	COG0640	Transcriptional regulator
AB895_3247	COG2850	peptidyl-arginine hydroxylation
AB895_3248	COG0424	maF-like protein
AB895_3252	COG0191	fructose-bisphosphate aldolase activity
AB895_3253	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AB895_3256	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AB895_3258	COG1192	Involved in chromosome partitioning
AB895_3259	COG1475	DNA binding
AB895_3260	COG0811	peptide transport
AB895_3262	COG1132	(ABC) transporter
AB895_3263	COG1663	tetraacyldisaccharide 4'-kinase activity
AB895_3267	COG0084	hydrolase, TatD family'
AB895_3270	COG2165	general secretion pathway protein
AB895_3276	COG0590	tRNA wobble adenosine to inosine editing
AB895_3280	COG0776	regulation of translation
AB895_3286	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AB895_3297	COG0305	Participates in initiation and elongation during chromosome replication
AB895_3313	COG4695	Portal protein
AB895_3325	COG0741	lytic transglycosylase activity
AB895_3325	COG1196	nuclear chromosome segregation
AB895_3325	COG0739	heme binding
AB895_3338	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AB895_3347	COG0339	signal peptide processing
AB895_3349	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AB895_3356	COG0702	epimerase
AB895_3357	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AB895_3361	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AB895_3367	COG0316	Belongs to the HesB IscA family
AB895_3368	COG0822	iron-sulfur transferase activity
AB895_3373	COG0776	regulation of translation
AB895_3374	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AB895_3375	COG2207	Transcriptional regulator
AB895_3376	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AB895_3377	COG1960	acyl-CoA dehydrogenase activity
AB895_3378	COG1960	acyl-CoA dehydrogenase activity
AB895_3381	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AB895_3385	COG4264	IucA IucC family
AB895_3386	COG4264	IucA IucC family
AB895_3388	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AB895_3399	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AB895_3400	COG0406	alpha-ribazole phosphatase activity
AB895_3403	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AB895_3404	COG0730	response to heat
AB895_3407	COG4773	Receptor
AB895_3408	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AB895_3411	COG1131	(ABC) transporter
AB895_3412	COG0842	Transport permease protein
AB895_3413	COG0842	Transport permease protein
AB895_3426	COG2226	methyltransferase
AB895_3432	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AB895_3433	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AB895_3441	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AB895_3443	COG0133	tryptophan synthase activity
AB895_3446	COG3706	GGDEF domain
AB895_3450	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AB895_3451	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AB895_3452	COG0022	dehydrogenase e1 component
AB895_3453	COG0508	dehydrogenase complex catalyzes the overall conversion of
AB895_3454	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AB895_3456	COG1063	alcohol dehydrogenase
AB895_3457	COG3781	membrane
AB895_3459	COG3453	Protein conserved in bacteria
AB895_3459	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AB895_3461	COG0730	response to heat
AB895_3465	COG3708	Transcriptional regulator
AB895_3465	COG2207	Transcriptional regulator
AB895_3466	COG1733	regulation of RNA biosynthetic process
AB895_3467	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AB895_3472	COG4521	taurine ABC transporter
AB895_3473	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AB895_3477	COG0477	Major facilitator Superfamily
AB895_3479	COG1027	Aspartate ammonia-lyase
AB895_3482	COG0583	DNA-binding transcription factor activity
AB895_3483	COG0583	DNA-binding transcription factor activity
AB895_3484	COG0183	Belongs to the thiolase family
AB895_3485	COG2031	fatty acid transporter
AB895_3488	COG0583	DNA-binding transcription factor activity
AB895_3490	COG2610	gluconate transmembrane transporter activity
AB895_3491	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3493	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3494	COG2207	Transcriptional regulator
AB895_3496	COG0412	Dienelactone hydrolase
AB895_3497	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3499	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_3502	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AB895_3502	COG0543	2 iron, 2 sulfur cluster binding
AB895_3503	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AB895_3504	COG4638	Rieske (2fe-2S)
AB895_3506	COG0725	ABC transporter, periplasmic molybdate-binding protein
AB895_3507	COG4149	molybdate abc transporter
AB895_3508	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AB895_3509	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3510	COG3433	isochorismatase activity
AB895_3510	COG1535	isochorismatase
AB895_3513	COG3293	Transposase
AB895_3524	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AB895_3527	COG0753	catalase activity
AB895_3529	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AB895_3534	COG3539	Fimbrial protein
AB895_3558	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AB895_3560	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AB895_3560	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
AB895_3560	COG3321	synthase
AB895_3560	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AB895_3565	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AB895_3574	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AB895_3575	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AB895_3576	COG0745	RESPONSE REGULATOR receiver
AB895_3577	COG2205	protein histidine kinase activity
AB895_3579	COG2207	Transcriptional regulator
AB895_3582	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3583	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AB895_3584	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AB895_3585	COG2851	Citrate transporter
AB895_3587	COG1414	Transcriptional regulator
AB895_3590	COG0583	DNA-binding transcription factor activity
AB895_3592	COG0477	Major facilitator Superfamily
AB895_3609	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AB895_3621	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AB895_3625	COG1120	ATPase activity
AB895_3629	COG1064	alcohol dehydrogenase
AB895_3632	COG2207	Transcriptional regulator
AB895_3633	COG2084	Dehydrogenase
AB895_3635	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AB895_3636	COG0583	DNA-binding transcription factor activity
AB895_3638	COG0129	dihydroxy-acid dehydratase activity
AB895_3639	COG1012	belongs to the aldehyde dehydrogenase family
AB895_3643	COG1566	PFAM secretion protein HlyD family protein
AB895_3646	COG0583	DNA-binding transcription factor activity
AB895_3655	COG3210	domain, Protein
AB895_3656	COG2831	hemolysin activation secretion protein
AB895_3659	COG0318	PFAM AMP-dependent synthetase and ligase
AB895_3661	COG1960	acyl-CoA dehydrogenase activity
AB895_3663	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3664	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3665	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3666	COG0583	DNA-binding transcription factor activity
AB895_3667	COG1309	transcriptional regulator
AB895_3675	COG1902	pentaerythritol trinitrate reductase activity
AB895_3675	COG0446	pyridine nucleotide-disulphide oxidoreductase
AB895_3678	COG1012	belongs to the aldehyde dehydrogenase family
AB895_3682	COG2186	Transcriptional regulator
AB895_3684	COG0583	DNA-binding transcription factor activity
AB895_3685	COG4948	Mandelate Racemase Muconate Lactonizing
AB895_3686	COG4829	muconolactone delta-isomerase
AB895_3688	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AB895_3689	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AB895_3690	COG0183	Belongs to the thiolase family
AB895_3691	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AB895_3693	COG1012	belongs to the aldehyde dehydrogenase family
AB895_3695	COG3733	amine oxidase
AB895_3697	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AB895_3699	COG1028	Short-chain dehydrogenase reductase Sdr
AB895_3701	COG4638	Rieske (2fe-2S)
AB895_3705	COG0154	amidase activity
AB895_3707	COG2814	Major facilitator Superfamily
AB895_3712	COG1960	acyl-CoA dehydrogenase activity
AB895_3713	COG0583	DNA-binding transcription factor activity
AB895_3714	COG1414	Transcriptional regulator
AB895_3717	COG2391	methyltransferase activity
AB895_3719	COG4993	Dehydrogenase
AB895_3720	COG3659	wide pore channel activity
AB895_3721	COG3420	alginic acid biosynthetic process
AB895_3722	COG0710	3-dehydroquinate dehydratase activity
AB895_3723	COG3485	protocatechuate 3,4-dioxygenase
AB895_3724	COG3485	protocatechuate 3,4-dioxygenase
AB895_3725	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AB895_3726	COG2271	Major facilitator Superfamily
AB895_3727	COG0596	Alpha beta hydrolase
AB895_3728	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AB895_3729	COG0183	Belongs to the thiolase family
AB895_3730	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AB895_3731	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AB895_3733	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AB895_3734	COG2323	membrane
AB895_3743	COG0446	pyridine nucleotide-disulphide oxidoreductase
AB895_3743	COG1902	pentaerythritol trinitrate reductase activity
AB895_3746	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AB895_3748	COG0542	response to heat
AB895_3749	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AB895_3756	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AB895_3757	COG0569	domain protein
AB895_3758	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AB895_3761	COG4774	siderophore transport
AB895_3762	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AB895_3764	COG1585	Membrane protein implicated in regulation of membrane protease activity
AB895_3766	COG1294	oxidase, subunit
AB895_3769	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AB895_3771	COG0552	protein localization to endoplasmic reticulum
AB895_3777	COG0516	GMP reductase activity
AB895_3777	COG0517	IMP dehydrogenase activity
AB895_3778	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AB895_3779	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AB895_3781	COG0583	DNA-binding transcription factor activity
AB895_3782	COG0024	Methionine aminopeptidase
AB895_3787	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AB895_3787	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AB895_3788	COG1105	Belongs to the carbohydrate kinase PfkB family
AB895_3789	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AB895_3789	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AB895_3789	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AB895_3793	COG5001	Diguanylate cyclase
AB895_3793	COG3300	MHYT domain
AB895_3797	COG0659	secondary active sulfate transmembrane transporter activity
AB895_3800	COG1113	amino acid transport
AB895_3802	COG1522	sequence-specific DNA binding
AB895_3807	COG1011	Hydrolase
AB895_3808	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AB895_3810	COG2137	regulation of response to DNA damage stimulus
AB895_3812	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AB895_3816	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AB895_3819	COG0575	Belongs to the CDS family
AB895_3820	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AB895_3825	COG3852	Histidine kinase
AB895_3826	COG2204	response regulator
AB895_3837	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AB895_3838	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AB895_3842	COG0697	spore germination
AB895_3843	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AB895_3845	COG0303	'Molybdopterin
AB895_3846	COG0521	Mo-molybdopterin cofactor biosynthetic process
AB895_3846	COG0315	cyclic pyranopterin monophosphate synthase activity
AB895_3849	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AB895_3850	COG0243	molybdopterin cofactor binding
AB895_3852	COG0243	molybdopterin cofactor binding
AB895_3853	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB895_3854	COG2146	nitrite reductase [NAD(P)H] activity
AB895_3854	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AB895_3855	COG0745	RESPONSE REGULATOR receiver
AB895_3856	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AB895_3856	COG1116	anion transmembrane transporter activity
AB895_3858	COG1196	nuclear chromosome segregation
AB895_3864	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AB895_3866	COG0511	ligase activity, forming carbon-carbon bonds
AB895_3869	COG2814	Major facilitator Superfamily
AB895_3872	COG3293	Transposase
AB895_3873	COG1063	alcohol dehydrogenase