locus-tag class description OQH41_00005 PF00308 Bacterial dnaA protein OQH41_00005 PF08299 Bacterial dnaA protein helix-turn-helix OQH41_00005 PF11638 DnaA N-terminal domain OQH41_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain OQH41_00010 PF02767 DNA polymerase III beta subunit, central domain OQH41_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain OQH41_00015 PF02463 RecF/RecN/SMC N terminal domain OQH41_00020 PF01751 Toprim domain OQH41_00020 PF18053 DNA gyrase B subunit insert domain OQH41_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_00020 PF00204 DNA gyrase B OQH41_00020 PF00986 DNA gyrase B subunit, carboxyl terminus OQH41_00030 PF09335 SNARE associated Golgi protein OQH41_00035 PF00005 ABC transporter OQH41_00035 PF12848 ABC transporter OQH41_00055 PF01521 Iron-sulphur cluster biosynthesis OQH41_00060 PF00561 alpha/beta hydrolase fold OQH41_00065 PF03702 Anhydro-N-acetylmuramic acid kinase OQH41_00070 PF00579 tRNA synthetases class I (W and Y) OQH41_00100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OQH41_00105 PF01252 Signal peptidase (SPase) II OQH41_00110 PF06827 Zinc finger found in FPG and IleRS OQH41_00110 PF00133 tRNA synthetases class I (I, L, M and V) OQH41_00110 PF08264 Anticodon-binding domain of tRNA OQH41_00115 PF06574 FAD synthetase OQH41_00115 PF01687 Riboflavin kinase OQH41_00125 PF01048 Phosphorylase superfamily OQH41_00130 PF08362 YcdC-like protein, C-terminal region OQH41_00130 PF00440 Bacterial regulatory proteins, tetR family OQH41_00135 PF00005 ABC transporter OQH41_00140 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_00145 PF00296 Luciferase-like monooxygenase OQH41_00150 PF09084 NMT1/THI5 like OQH41_00155 PF09084 NMT1/THI5 like OQH41_00160 PF00696 Amino acid kinase family OQH41_00160 PF00583 Acetyltransferase (GNAT) family OQH41_00175 PF00106 short chain dehydrogenase OQH41_00180 PF13419 Haloacid dehalogenase-like hydrolase OQH41_00190 PF01323 DSBA-like thioredoxin domain OQH41_00195 PF08360 QacR-like protein, C-terminal region OQH41_00195 PF00440 Bacterial regulatory proteins, tetR family OQH41_00200 PF00440 Bacterial regulatory proteins, tetR family OQH41_00205 PF00175 Oxidoreductase NAD-binding domain OQH41_00210 PF00487 Fatty acid desaturase OQH41_00215 PF03725 3' exoribonuclease family, domain 2 OQH41_00215 PF01138 3' exoribonuclease family, domain 1 OQH41_00225 PF04185 Phosphoesterase family OQH41_00225 PF05506 Domain of unknown function (DUF756) OQH41_00235 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain OQH41_00235 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain OQH41_00240 PF01510 N-acetylmuramoyl-L-alanine amidase OQH41_00245 PF03023 Lipid II flippase MurJ OQH41_00250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase OQH41_00250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OQH41_00255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OQH41_00255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase OQH41_00260 PF13614 AAA domain OQH41_00260 PF13807 G-rich domain on putative tyrosine kinase OQH41_00260 PF02706 Chain length determinant protein OQH41_00265 PF01451 Low molecular weight phosphotyrosine protein phosphatase OQH41_00270 PF10531 SLBB domain OQH41_00270 PF02563 Polysaccharide biosynthesis/export protein OQH41_00270 PF18412 Outer-membrane lipoprotein Wza C-terminal domain OQH41_00275 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain OQH41_00275 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain OQH41_00275 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain OQH41_00285 PF00535 Glycosyl transferase family 2 OQH41_00290 PF13439 Glycosyltransferase Family 4 OQH41_00290 PF00534 Glycosyl transferases group 1 OQH41_00300 PF13439 Glycosyltransferase Family 4 OQH41_00300 PF00534 Glycosyl transferases group 1 OQH41_00305 PF13477 Glycosyl transferase 4-like OQH41_00305 PF00534 Glycosyl transferases group 1 OQH41_00310 PF02397 Bacterial sugar transferase OQH41_00315 PF00483 Nucleotidyl transferase OQH41_00320 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain OQH41_00320 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain OQH41_00320 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain OQH41_00325 PF00342 Phosphoglucose isomerase OQH41_00330 PF16363 GDP-mannose 4,6 dehydratase OQH41_00340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III OQH41_00340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II OQH41_00340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OQH41_00340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain OQH41_00345 PF02652 L-lactate permease OQH41_00350 PF00392 Bacterial regulatory proteins, gntR family OQH41_00350 PF07729 FCD domain OQH41_00355 PF01070 FMN-dependent dehydrogenase OQH41_00360 PF09330 D-lactate dehydrogenase, membrane binding OQH41_00360 PF01565 FAD binding domain OQH41_00365 PF00155 Aminotransferase class I and II OQH41_00375 PF00392 Bacterial regulatory proteins, gntR family OQH41_00375 PF07729 FCD domain OQH41_00390 PF00330 Aconitase family (aconitate hydratase) OQH41_00390 PF00694 Aconitase C-terminal domain OQH41_00420 PF00849 RNA pseudouridylate synthase OQH41_00435 PF07715 TonB-dependent Receptor Plug Domain OQH41_00435 PF00593 TonB dependent receptor OQH41_00445 PF01037 Lrp/AsnC ligand binding domain OQH41_00450 PF01266 FAD dependent oxidoreductase OQH41_00455 PF00842 Alanine racemase, C-terminal domain OQH41_00455 PF01168 Alanine racemase, N-terminal domain OQH41_00460 PF01042 Endoribonuclease L-PSP OQH41_00465 PF00324 Amino acid permease OQH41_00470 PF00324 Amino acid permease OQH41_00480 PF00171 Aldehyde dehydrogenase family OQH41_00485 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase OQH41_00485 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase OQH41_00490 PF13193 AMP-binding enzyme C-terminal domain OQH41_00490 PF00501 AMP-binding enzyme OQH41_00495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_00495 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_00495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_00500 PF00378 Enoyl-CoA hydratase/isomerase OQH41_00505 PF00378 Enoyl-CoA hydratase/isomerase OQH41_00510 PF07690 Major Facilitator Superfamily OQH41_00510 PF00083 Sugar (and other) transporter OQH41_00515 PF00765 Autoinducer synthase OQH41_00525 PF03472 Autoinducer binding domain OQH41_00525 PF00196 Bacterial regulatory proteins, luxR family OQH41_00530 PF00501 AMP-binding enzyme OQH41_00535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_00535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_00535 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_00540 PF02801 Beta-ketoacyl synthase, C-terminal domain OQH41_00540 PF16197 Ketoacyl-synthetase C-terminal extension OQH41_00540 PF00975 Thioesterase domain OQH41_00540 PF14765 Polyketide synthase dehydratase OQH41_00540 PF00550 Phosphopantetheine attachment site OQH41_00540 PF00109 Beta-ketoacyl synthase, N-terminal domain OQH41_00540 PF08242 Methyltransferase domain OQH41_00545 PF00550 Phosphopantetheine attachment site OQH41_00545 PF13193 AMP-binding enzyme C-terminal domain OQH41_00545 PF00501 AMP-binding enzyme OQH41_00545 PF00975 Thioesterase domain OQH41_00545 PF00668 Condensation domain OQH41_00560 PF16363 GDP-mannose 4,6 dehydratase OQH41_00565 PF01648 4'-phosphopantetheinyl transferase superfamily OQH41_00580 PF01722 BolA-like protein OQH41_00590 PF13614 AAA domain OQH41_00605 PF09335 SNARE associated Golgi protein OQH41_00610 PF07681 DoxX OQH41_00615 PF04286 Protein of unknown function (DUF445) OQH41_00620 PF02540 NAD synthase OQH41_00620 PF00958 GMP synthase C terminal domain OQH41_00620 PF00117 Glutamine amidotransferase class-I OQH41_00625 PF01909 Nucleotidyltransferase domain OQH41_00625 PF13427 Domain of unknown function (DUF4111) OQH41_00630 PF03551 Transcriptional regulator PadR-like family OQH41_00640 PF05726 Pirin C-terminal cupin domain OQH41_00640 PF02678 Pirin OQH41_00660 PF03485 Arginyl tRNA synthetase N terminal domain OQH41_00660 PF05746 DALR anticodon binding domain OQH41_00660 PF00750 tRNA synthetases class I (R) OQH41_00665 PF03949 Malic enzyme, NAD binding domain OQH41_00665 PF00390 Malic enzyme, N-terminal domain OQH41_00670 PF04261 Dyp-type peroxidase family OQH41_00675 PF01810 LysE type translocator OQH41_00680 PF00950 ABC 3 transport family OQH41_00685 PF00005 ABC transporter OQH41_00705 PF00119 ATP synthase A chain OQH41_00710 PF00137 ATP synthase subunit C OQH41_00715 PF00430 ATP synthase B/B' CF(0) OQH41_00720 PF00213 ATP synthase delta (OSCP) subunit OQH41_00725 PF00306 ATP synthase alpha/beta chain, C terminal domain OQH41_00725 PF02874 ATP synthase alpha/beta family, beta-barrel domain OQH41_00725 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OQH41_00730 PF00231 ATP synthase OQH41_00735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OQH41_00735 PF02874 ATP synthase alpha/beta family, beta-barrel domain OQH41_00740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain OQH41_00750 PF00255 Glutathione peroxidase OQH41_00760 PF07690 Major Facilitator Superfamily OQH41_00765 PF00440 Bacterial regulatory proteins, tetR family OQH41_00770 PF00892 EamA-like transporter family OQH41_00775 PF01300 Telomere recombination OQH41_00780 PF02481 DNA recombination-mediator protein A OQH41_00780 PF17782 DprA winged helix domain OQH41_00790 PF01327 Polypeptide deformylase OQH41_00850 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_00860 PF03358 NADPH-dependent FMN reductase OQH41_00880 PF11842 Domain of unknown function (DUF3362) OQH41_00880 PF04055 Radical SAM superfamily OQH41_00880 PF08497 Radical SAM N-terminal OQH41_00900 PF06123 Inner membrane protein CreD OQH41_00905 PF00512 His Kinase A (phospho-acceptor) domain OQH41_00905 PF00672 HAMP domain OQH41_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_00910 PF00486 Transcriptional regulatory protein, C terminal OQH41_00910 PF00072 Response regulator receiver domain OQH41_00920 PF00817 impB/mucB/samB family OQH41_00920 PF11799 impB/mucB/samB family C-terminal domain OQH41_00920 PF11798 IMS family HHH motif OQH41_00930 PF07690 Major Facilitator Superfamily OQH41_00935 PF03641 Possible lysine decarboxylase OQH41_00940 PF03471 Transporter associated domain OQH41_00940 PF03741 Integral membrane protein TerC family OQH41_00945 PF02810 SEC-C motif OQH41_00950 PF03458 UPF0126 domain OQH41_00955 PF07690 Major Facilitator Superfamily OQH41_00960 PF03989 DNA gyrase C-terminal domain, beta-propeller OQH41_00960 PF00521 DNA gyrase/topoisomerase IV, subunit A OQH41_00965 PF00501 AMP-binding enzyme OQH41_00965 PF13193 AMP-binding enzyme C-terminal domain OQH41_00980 PF00719 Inorganic pyrophosphatase OQH41_00985 PF03573 outer membrane porin, OprD family OQH41_01000 PF00701 Dihydrodipicolinate synthetase family OQH41_01065 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_01075 PF09278 MerR, DNA binding OQH41_01075 PF00376 MerR family regulatory protein OQH41_01080 PF00403 Heavy-metal-associated domain OQH41_01085 PF01022 Bacterial regulatory protein, arsR family OQH41_01090 PF00529 HlyD membrane-fusion protein of T1SS OQH41_01090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_01095 PF00873 AcrB/AcrD/AcrF family OQH41_01100 PF02321 Outer membrane efflux protein OQH41_01115 PF01545 Cation efflux family OQH41_01115 PF16916 Dimerisation domain of Zinc Transporter OQH41_01135 PF14461 Prokaryotic E2 family B OQH41_01135 PF00899 ThiF family OQH41_01170 PF00543 Nitrogen regulatory protein P-II OQH41_01175 PF00909 Ammonium Transporter Family OQH41_01180 PF03477 ATP cone domain OQH41_01185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region OQH41_01185 PF01872 RibD C-terminal domain OQH41_01195 PF00677 Lumazine binding domain OQH41_01215 PF00883 Cytosol aminopeptidase family, catalytic domain OQH41_01215 PF02789 Cytosol aminopeptidase family, N-terminal domain OQH41_01225 PF03739 Lipopolysaccharide export system permease LptF/LptG OQH41_01230 PF06415 BPG-independent PGAM N-terminus (iPGM_N) OQH41_01230 PF01676 Metalloenzyme superfamily OQH41_01235 PF00595 PDZ domain OQH41_01235 PF03572 Peptidase family S41 OQH41_01240 PF00072 Response regulator receiver domain OQH41_01240 PF00158 Sigma-54 interaction domain OQH41_01240 PF02954 Bacterial regulatory protein, Fis family OQH41_01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_01245 PF00512 His Kinase A (phospho-acceptor) domain OQH41_01250 PF00196 Bacterial regulatory proteins, luxR family OQH41_01250 PF00072 Response regulator receiver domain OQH41_01255 PF00768 D-alanyl-D-alanine carboxypeptidase OQH41_01260 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_01265 PF01842 ACT domain OQH41_01265 PF00742 Homoserine dehydrogenase OQH41_01265 PF03447 Homoserine dehydrogenase, NAD binding domain OQH41_01270 PF13098 Thioredoxin-like domain OQH41_01270 PF10411 Disulfide bond isomerase protein N-terminus OQH41_01275 PF00589 Phage integrase family OQH41_01275 PF02899 Phage integrase, N-terminal SAM-like domain OQH41_01285 PF07670 Nucleoside recognition OQH41_01285 PF02421 Ferrous iron transport protein B OQH41_01285 PF07664 Ferrous iron transport protein B C terminus OQH41_01295 PF08245 Mur ligase middle domain OQH41_01295 PF02875 Mur ligase family, glutamate ligase domain OQH41_01300 PF01098 Cell cycle protein OQH41_01305 PF00749 tRNA synthetases class I (E and Q), catalytic domain OQH41_01310 PF01258 Prokaryotic dksA/traR C4-type zinc finger OQH41_01315 PF00149 Calcineurin-like phosphoesterase OQH41_01320 PF00293 NUDIX domain OQH41_01325 PF13667 ThiC-associated domain OQH41_01325 PF01964 Radical SAM ThiC family OQH41_01340 PF00892 EamA-like transporter family OQH41_01345 PF02321 Outer membrane efflux protein OQH41_01350 PF01895 PhoU domain OQH41_01355 PF04362 Bacterial Fe(2+) trafficking OQH41_01360 PF14698 Argininosuccinate lyase C-terminal OQH41_01360 PF00206 Lyase OQH41_01365 PF06580 Histidine kinase OQH41_01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_01365 PF07694 5TMR of 5TMR-LYT OQH41_01370 PF04397 LytTr DNA-binding domain OQH41_01370 PF00072 Response regulator receiver domain OQH41_01375 PF03900 Porphobilinogen deaminase, C-terminal domain OQH41_01375 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain OQH41_01400 PF00816 H-NS histone family OQH41_01415 PF00263 Bacterial type II and III secretion system protein OQH41_01415 PF03958 Bacterial type II/III secretion system short domain OQH41_01420 PF12401 Protein of unknown function (DUF2662) OQH41_01420 PF00498 FHA domain OQH41_01425 PF13419 Haloacid dehalogenase-like hydrolase OQH41_01430 PF04715 Anthranilate synthase component I, N terminal region OQH41_01430 PF00425 chorismate binding enzyme OQH41_01455 PF00009 Elongation factor Tu GTP binding domain OQH41_01455 PF03144 Elongation factor Tu domain 2 OQH41_01455 PF03143 Elongation factor Tu C-terminal domain OQH41_01465 PF00584 SecE/Sec61-gamma subunits of protein translocation complex OQH41_01470 PF00467 KOW motif OQH41_01470 PF02357 Transcription termination factor nusG OQH41_01475 PF03946 Ribosomal protein L11, N-terminal domain OQH41_01475 PF00298 Ribosomal protein L11, RNA binding domain OQH41_01480 PF00687 Ribosomal protein L1p/L10e family OQH41_01485 PF00466 Ribosomal protein L10 OQH41_01490 PF16320 Ribosomal protein L7/L12 dimerisation domain OQH41_01490 PF00542 Ribosomal protein L7/L12 C-terminal domain OQH41_01495 PF10385 RNA polymerase beta subunit external 1 domain OQH41_01495 PF00562 RNA polymerase Rpb2, domain 6 OQH41_01495 PF04560 RNA polymerase Rpb2, domain 7 OQH41_01495 PF04563 RNA polymerase beta subunit OQH41_01495 PF04565 RNA polymerase Rpb2, domain 3 OQH41_01495 PF04561 RNA polymerase Rpb2, domain 2 OQH41_01500 PF04997 RNA polymerase Rpb1, domain 1 OQH41_01500 PF00623 RNA polymerase Rpb1, domain 2 OQH41_01500 PF04998 RNA polymerase Rpb1, domain 5 OQH41_01500 PF04983 RNA polymerase Rpb1, domain 3 OQH41_01500 PF05000 RNA polymerase Rpb1, domain 4 OQH41_01520 PF00561 alpha/beta hydrolase fold OQH41_01525 PF13726 Na+-H+ antiporter family OQH41_01525 PF03553 Na+/H+ antiporter family OQH41_01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_01540 PF00183 Hsp90 protein OQH41_01555 PF01323 DSBA-like thioredoxin domain OQH41_01565 PF00376 MerR family regulatory protein OQH41_01565 PF09278 MerR, DNA binding OQH41_01585 PF02803 Thiolase, C-terminal domain OQH41_01585 PF00108 Thiolase, N-terminal domain OQH41_01590 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OQH41_01590 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OQH41_01590 PF00378 Enoyl-CoA hydratase/isomerase OQH41_01615 PF01541 GIY-YIG catalytic domain OQH41_01615 PF02151 UvrB/uvrC motif OQH41_01615 PF08459 UvrC Helix-hairpin-helix N-terminal OQH41_01625 PF01066 CDP-alcohol phosphatidyltransferase OQH41_01655 PF13533 Biotin-lipoyl like OQH41_01660 PF03652 Holliday junction resolvase OQH41_01665 PF02622 Uncharacterized ACR, COG1678 OQH41_01670 PF02463 RecF/RecN/SMC N terminal domain OQH41_01680 PF06865 Pyrimidine/purine nucleoside phosphorylase OQH41_01685 PF00588 SpoU rRNA Methylase family OQH41_01685 PF08032 RNA 2'-O ribose methyltransferase substrate binding OQH41_01695 PF01121 Dephospho-CoA kinase OQH41_01700 PF06750 Bacterial Peptidase A24 N-terminal domain OQH41_01700 PF01478 Type IV leader peptidase family OQH41_01705 PF00482 Type II secretion system (T2SS), protein F OQH41_01710 PF00437 Type II/IV secretion system protein OQH41_01710 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain OQH41_01715 PF00121 Triosephosphate isomerase OQH41_01720 PF03840 Preprotein translocase SecG subunit OQH41_01740 PF17384 RimP C-terminal SH3 domain OQH41_01740 PF02576 RimP N-terminal domain OQH41_01745 PF08529 NusA N-terminal domain OQH41_01745 PF13184 NusA-like KH domain OQH41_01745 PF00575 S1 RNA binding domain OQH41_01750 PF00009 Elongation factor Tu GTP binding domain OQH41_01750 PF11987 Translation-initiation factor 2 OQH41_01750 PF08364 Bacterial translation initiation factor IF-2 associated region OQH41_01750 PF04760 Translation initiation factor IF-2, N-terminal region OQH41_01755 PF02033 Ribosome-binding factor A OQH41_01760 PF03334 Na+/H+ antiporter subunit OQH41_01765 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) OQH41_01770 PF01899 Na+/H+ ion antiporter subunit OQH41_01775 PF00361 Proton-conducting membrane transporter OQH41_01780 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L OQH41_01785 PF13244 Domain of unknown function (DUF4040) OQH41_01785 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter OQH41_01785 PF00361 Proton-conducting membrane transporter OQH41_01785 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OQH41_01800 PF01502 Phosphoribosyl-AMP cyclohydrolase OQH41_01810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OQH41_01815 PF01494 FAD binding domain OQH41_01820 PF03109 ABC1 family OQH41_01830 PF01209 ubiE/COQ5 methyltransferase family OQH41_01840 PF03976 Polyphosphate kinase 2 (PPK2) OQH41_01850 PF17946 RecC C-terminal domain OQH41_01855 PF12705 PD-(D/E)XK nuclease superfamily OQH41_01855 PF00580 UvrD/REP helicase N-terminal domain OQH41_01855 PF13361 UvrD-like helicase C-terminal domain OQH41_01860 PF13538 UvrD-like helicase C-terminal domain OQH41_01865 PF00144 Beta-lactamase OQH41_01870 PF00312 Ribosomal protein S15 OQH41_01875 PF00013 KH domain OQH41_01875 PF01138 3' exoribonuclease family, domain 1 OQH41_01875 PF03725 3' exoribonuclease family, domain 2 OQH41_01875 PF00575 S1 RNA binding domain OQH41_01875 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain OQH41_01880 PF01544 CorA-like Mg2+ transporter protein OQH41_01890 PF00226 DnaJ domain OQH41_01890 PF01556 DnaJ C terminal domain OQH41_01900 PF01430 Hsp33 protein OQH41_01905 PF00999 Sodium/hydrogen exchanger family OQH41_01905 PF02254 TrkA-N domain OQH41_01910 PF18074 Primosomal protein N C-terminal domain OQH41_01910 PF17764 3′ DNA-binding domain (3′BD) OQH41_01910 PF18319 PriA DNA helicase Cys-rich region (CRR) domain OQH41_01910 PF00270 DEAD/DEAH box helicase OQH41_01910 PF00271 Helicase conserved C-terminal domain OQH41_01915 PF00482 Type II secretion system (T2SS), protein F OQH41_01920 PF08334 Type II secretion system (T2SS), protein G OQH41_01920 PF07963 Prokaryotic N-terminal methylation motif OQH41_01930 PF01588 Putative tRNA binding domain OQH41_01935 PF00795 Carbon-nitrogen hydrolase OQH41_01940 PF00571 CBS domain OQH41_01940 PF03471 Transporter associated domain OQH41_01945 PF01206 Sulfurtransferase TusA OQH41_01965 PF01177 Asp/Glu/Hydantoin racemase OQH41_01975 PF00762 Ferrochelatase OQH41_01980 PF00753 Metallo-beta-lactamase superfamily OQH41_01985 PF03884 DNA gyrase inhibitor YacG OQH41_01995 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster OQH41_01995 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_01995 PF13247 4Fe-4S dicluster domain OQH41_02005 PF02537 CrcB-like protein, Camphor Resistance (CrcB) OQH41_02015 PF01197 Ribosomal protein L31 OQH41_02020 PF03109 ABC1 family OQH41_02025 PF08028 Acyl-CoA dehydrogenase, C-terminal domain OQH41_02025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_02030 PF08028 Acyl-CoA dehydrogenase, C-terminal domain OQH41_02030 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_02030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_02035 PF01554 MatE OQH41_02045 PF04055 Radical SAM superfamily OQH41_02045 PF06969 HemN C-terminal domain OQH41_02055 PF03466 LysR substrate binding domain OQH41_02055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_02070 PF00501 AMP-binding enzyme OQH41_02070 PF13193 AMP-binding enzyme C-terminal domain OQH41_02075 PF10150 Ribonuclease E/G family OQH41_02075 PF00575 S1 RNA binding domain OQH41_02075 PF12111 Polyribonucleotide phosphorylase C terminal OQH41_02080 PF00849 RNA pseudouridylate synthase OQH41_02080 PF01479 S4 domain OQH41_02085 PF13419 Haloacid dehalogenase-like hydrolase OQH41_02090 PF08279 HTH domain OQH41_02090 PF13280 WYL domain OQH41_02095 PF02798 Glutathione S-transferase, N-terminal domain OQH41_02105 PF03466 LysR substrate binding domain OQH41_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_02110 PF12706 Beta-lactamase superfamily domain OQH41_02115 PF00141 Peroxidase OQH41_02120 PF01590 GAF domain OQH41_02120 PF05524 PEP-utilising enzyme, N-terminal OQH41_02120 PF00391 PEP-utilising enzyme, mobile domain OQH41_02120 PF02896 PEP-utilising enzyme, TIM barrel domain OQH41_02125 PF00293 NUDIX domain OQH41_02145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_02145 PF03466 LysR substrate binding domain OQH41_02155 PF00330 Aconitase family (aconitate hydratase) OQH41_02160 PF00694 Aconitase C-terminal domain OQH41_02170 PF00180 Isocitrate/isopropylmalate dehydrogenase OQH41_02185 PF01176 Translation initiation factor 1A / IF-1 OQH41_02195 PF01416 tRNA pseudouridine synthase OQH41_02215 PF01118 Semialdehyde dehydrogenase, NAD binding domain OQH41_02215 PF02774 Semialdehyde dehydrogenase, dimerisation domain OQH41_02225 PF00375 Sodium:dicarboxylate symporter family OQH41_02235 PF03279 Bacterial lipid A biosynthesis acyltransferase OQH41_02240 PF01810 LysE type translocator OQH41_02250 PF16326 ABC transporter C-terminal domain OQH41_02250 PF00005 ABC transporter OQH41_02250 PF12848 ABC transporter OQH41_02255 PF04102 SlyX OQH41_02260 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_02260 PF00107 Zinc-binding dehydrogenase OQH41_02265 PF01638 HxlR-like helix-turn-helix OQH41_02275 PF08272 Topoisomerase I zinc-ribbon-like OQH41_02275 PF01131 DNA topoisomerase OQH41_02275 PF01751 Toprim domain OQH41_02275 PF01396 Topoisomerase DNA binding C4 zinc finger OQH41_02290 PF00580 UvrD/REP helicase N-terminal domain OQH41_02290 PF13361 UvrD-like helicase C-terminal domain OQH41_02295 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) OQH41_02315 PF02254 TrkA-N domain OQH41_02315 PF00999 Sodium/hydrogen exchanger family OQH41_02320 PF00471 Ribosomal protein L33 OQH41_02325 PF00830 Ribosomal L28 family OQH41_02330 PF00171 Aldehyde dehydrogenase family OQH41_02340 PF01842 ACT domain OQH41_02340 PF00551 Formyl transferase OQH41_02350 PF01618 MotA/TolQ/ExbB proton channel family OQH41_02360 PF01625 Peptide methionine sulfoxide reductase OQH41_02370 PF00186 Dihydrofolate reductase OQH41_02375 PF00303 Thymidylate synthase OQH41_02390 PF01790 Prolipoprotein diacylglyceryl transferase OQH41_02410 PF00902 Sec-independent protein translocase protein (TatC) OQH41_02415 PF02416 mttA/Hcf106 family OQH41_02420 PF02416 mttA/Hcf106 family OQH41_02430 PF01725 Ham1 family OQH41_02440 PF00561 alpha/beta hydrolase fold OQH41_02440 PF07021 Methionine biosynthesis protein MetW OQH41_02445 PF00561 alpha/beta hydrolase fold OQH41_02450 PF08502 LeuA allosteric (dimerisation) domain OQH41_02450 PF00682 HMGL-like OQH41_02455 PF18331 PKHD-type hydroxylase C-terminal domain OQH41_02455 PF13640 2OG-Fe(II) oxygenase superfamily OQH41_02460 PF00593 TonB dependent receptor OQH41_02460 PF07715 TonB-dependent Receptor Plug Domain OQH41_02465 PF05697 Bacterial trigger factor protein (TF) OQH41_02465 PF05698 Bacterial trigger factor protein (TF) C-terminus OQH41_02465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OQH41_02470 PF00574 Clp protease OQH41_02475 PF06689 ClpX C4-type zinc finger OQH41_02475 PF10431 C-terminal, D2-small domain, of ClpB protein OQH41_02475 PF07724 AAA domain (Cdc48 subfamily) OQH41_02490 PF05681 Fumarate hydratase (Fumerase) OQH41_02490 PF05683 Fumarase C-terminus OQH41_02495 PF07085 DRTGG domain OQH41_02495 PF01515 Phosphate acetyl/butaryl transferase OQH41_02500 PF00871 Acetokinase family OQH41_02505 PF00920 Dehydratase family OQH41_02510 PF01081 KDPG and KHG aldolase OQH41_02515 PF02447 GntP family permease OQH41_02520 PF01202 Shikimate kinase OQH41_02525 PF00171 Aldehyde dehydrogenase family OQH41_02530 PF00171 Aldehyde dehydrogenase family OQH41_02535 PF00561 alpha/beta hydrolase fold OQH41_02545 PF00933 Glycosyl hydrolase family 3 N terminal domain OQH41_02550 PF03572 Peptidase family S41 OQH41_02550 PF17804 Tail specific protease N-terminal domain OQH41_02550 PF00595 PDZ domain OQH41_02550 PF11818 C-terminal domain of tail specific protease (DUF3340) OQH41_02555 PF00534 Glycosyl transferases group 1 OQH41_02555 PF13439 Glycosyltransferase Family 4 OQH41_02560 PF01569 PAP2 superfamily OQH41_02565 PF04384 Iron-sulphur cluster assembly OQH41_02570 PF00334 Nucleoside diphosphate kinase OQH41_02575 PF04055 Radical SAM superfamily OQH41_02585 PF13464 Domain of unknown function (DUF4115) OQH41_02590 PF04551 GcpE protein OQH41_02595 PF03129 Anticodon binding domain OQH41_02595 PF13393 Histidyl-tRNA synthetase OQH41_02605 PF01011 PQQ enzyme repeat OQH41_02605 PF13360 PQQ-like domain OQH41_02610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal OQH41_02610 PF01926 50S ribosome-binding GTPase OQH41_02620 PF02556 Preprotein translocase subunit SecB OQH41_02625 PF00462 Glutaredoxin OQH41_02635 PF03193 RsgA GTPase OQH41_02640 PF00929 Exonuclease OQH41_02655 PF02321 Outer membrane efflux protein OQH41_02660 PF00005 ABC transporter OQH41_02660 PF02687 FtsX-like permease family OQH41_02660 PF12704 MacB-like periplasmic core domain OQH41_02665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_02680 PF09334 tRNA synthetases class I (M) OQH41_02680 PF13603 Leucyl-tRNA synthetase, Domain 2 OQH41_02680 PF00133 tRNA synthetases class I (I, L, M and V) OQH41_02680 PF08264 Anticodon-binding domain of tRNA OQH41_02690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OQH41_02690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain OQH41_02690 PF00205 Thiamine pyrophosphate enzyme, central domain OQH41_02695 PF10369 Small subunit of acetolactate synthase OQH41_02700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain OQH41_02700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain OQH41_02735 PF00009 Elongation factor Tu GTP binding domain OQH41_02735 PF03144 Elongation factor Tu domain 2 OQH41_02735 PF16658 Class II release factor RF3, C-terminal domain OQH41_02750 PF01026 TatD related DNase OQH41_02755 PF00694 Aconitase C-terminal domain OQH41_02755 PF00330 Aconitase family (aconitate hydratase) OQH41_02765 PF00899 ThiF family OQH41_02775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_02775 PF03466 LysR substrate binding domain OQH41_02785 PF01207 Dihydrouridine synthase (Dus) OQH41_02790 PF00589 Phage integrase family OQH41_02810 PF13005 zinc-finger binding domain of transposase IS66 OQH41_02810 PF13007 Transposase C of IS166 homeodomain OQH41_02810 PF13817 IS66 C-terminal element OQH41_02810 PF03050 Transposase IS66 family OQH41_02885 PF04945 YHS domain OQH41_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_02890 PF00512 His Kinase A (phospho-acceptor) domain OQH41_02890 PF00672 HAMP domain OQH41_02895 PF00072 Response regulator receiver domain OQH41_02895 PF00486 Transcriptional regulatory protein, C terminal OQH41_02905 PF07732 Multicopper oxidase OQH41_02905 PF00394 Multicopper oxidase OQH41_02905 PF07731 Multicopper oxidase OQH41_02925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_02930 PF00873 AcrB/AcrD/AcrF family OQH41_02940 PF07664 Ferrous iron transport protein B C terminus OQH41_02940 PF02421 Ferrous iron transport protein B OQH41_02940 PF07670 Nucleoside recognition OQH41_02955 PF13411 MerR HTH family regulatory protein OQH41_02960 PF03960 ArsC family OQH41_02965 PF01022 Bacterial regulatory protein, arsR family OQH41_02975 PF01758 Sodium Bile acid symporter family OQH41_02980 PF03358 NADPH-dependent FMN reductase OQH41_02985 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_03025 PF11202 Phosphoribosyl transferase (PRTase) OQH41_03025 PF15608 PELOTA RNA binding domain OQH41_03035 PF02342 TerD domain OQH41_03040 PF02342 TerD domain OQH41_03050 PF02342 TerD domain OQH41_03065 PF02342 TerD domain OQH41_03070 PF07690 Major Facilitator Superfamily OQH41_03080 PF00892 EamA-like transporter family OQH41_03085 PF01262 Alanine dehydrogenase/PNT, C-terminal domain OQH41_03085 PF05222 Alanine dehydrogenase/PNT, N-terminal domain OQH41_03090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch OQH41_03095 PF02233 NAD(P) transhydrogenase beta subunit OQH41_03100 PF00106 short chain dehydrogenase OQH41_03110 PF01261 Xylose isomerase-like TIM barrel OQH41_03115 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase OQH41_03115 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase OQH41_03120 PF00378 Enoyl-CoA hydratase/isomerase OQH41_03125 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) OQH41_03125 PF00672 HAMP domain OQH41_03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_03125 PF00512 His Kinase A (phospho-acceptor) domain OQH41_03125 PF01627 Hpt domain OQH41_03125 PF00072 Response regulator receiver domain OQH41_03130 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_03140 PF05958 tRNA (Uracil-5-)-methyltransferase OQH41_03145 PF02824 TGS domain OQH41_03145 PF04607 Region found in RelA / SpoT proteins OQH41_03145 PF13291 ACT domain OQH41_03155 PF03819 MazG nucleotide pyrophosphohydrolase domain OQH41_03165 PF01743 Poly A polymerase head domain OQH41_03165 PF12626 Polymerase A arginine-rich C-terminus OQH41_03165 PF12627 Probable RNA and SrmB- binding site of polymerase A OQH41_03170 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) OQH41_03175 PF02548 Ketopantoate hydroxymethyltransferase OQH41_03180 PF02569 Pantoate-beta-alanine ligase OQH41_03185 PF03668 P-loop ATPase protein family OQH41_03190 PF00381 PTS HPr component phosphorylation site OQH41_03195 PF04751 Protein of unknown function (DUF615) OQH41_03200 PF00501 AMP-binding enzyme OQH41_03200 PF13193 AMP-binding enzyme C-terminal domain OQH41_03205 PF03129 Anticodon binding domain OQH41_03205 PF02824 TGS domain OQH41_03205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) OQH41_03205 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain OQH41_03210 PF00707 Translation initiation factor IF-3, C-terminal domain OQH41_03210 PF05198 Translation initiation factor IF-3, N-terminal domain OQH41_03215 PF02798 Glutathione S-transferase, N-terminal domain OQH41_03215 PF00043 Glutathione S-transferase, C-terminal domain OQH41_03220 PF09335 SNARE associated Golgi protein OQH41_03225 PF07690 Major Facilitator Superfamily OQH41_03235 PF01632 Ribosomal protein L35 OQH41_03240 PF00453 Ribosomal protein L20 OQH41_03260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain OQH41_03260 PF01409 tRNA synthetases class II core domain (F) OQH41_03265 PF03483 B3/4 domain OQH41_03265 PF03484 tRNA synthetase B5 domain OQH41_03265 PF03147 Ferredoxin-fold anticodon binding domain OQH41_03265 PF01588 Putative tRNA binding domain OQH41_03265 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain OQH41_03270 PF00216 Bacterial DNA-binding protein OQH41_03285 PF07497 Rho termination factor, RNA-binding domain OQH41_03285 PF07498 Rho termination factor, N-terminal domain OQH41_03285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain OQH41_03290 PF00085 Thioredoxin OQH41_03295 PF02541 Ppx/GppA phosphatase family OQH41_03300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit OQH41_03305 PF01171 PP-loop family OQH41_03305 PF09179 TilS substrate binding domain OQH41_03305 PF11734 TilS substrate C-terminal domain OQH41_03310 PF03807 NADP oxidoreductase coenzyme F420-dependent OQH41_03310 PF14748 Pyrroline-5-carboxylate reductase dimerisation OQH41_03315 PF02325 YGGT family OQH41_03320 PF01367 5'-3' exonuclease, C-terminal SAM fold OQH41_03320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain OQH41_03320 PF00476 DNA polymerase family A OQH41_03320 PF01612 3'-5' exonuclease OQH41_03340 PF00437 Type II/IV secretion system protein OQH41_03345 PF02566 OsmC-like protein OQH41_03350 PF01047 MarR family OQH41_03360 PF00795 Carbon-nitrogen hydrolase OQH41_03405 PF04963 Sigma-54 factor, core binding domain OQH41_03405 PF00309 Sigma-54 factor, Activator interacting domain (AID) OQH41_03405 PF04552 Sigma-54, DNA binding domain OQH41_03410 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein OQH41_03415 PF01722 BolA-like protein OQH41_03420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) OQH41_03425 PF01634 ATP phosphoribosyltransferase OQH41_03430 PF00815 Histidinol dehydrogenase OQH41_03435 PF00155 Aminotransferase class I and II OQH41_03440 PF04715 Anthranilate synthase component I, N terminal region OQH41_03440 PF00425 chorismate binding enzyme OQH41_03480 PF00293 NUDIX domain OQH41_03485 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_03490 PF00814 Glycoprotease family OQH41_03495 PF04445 Putative SAM-dependent methyltransferase OQH41_03505 PF00756 Putative esterase OQH41_03515 PF00834 Ribulose-phosphate 3 epimerase family OQH41_03530 PF07732 Multicopper oxidase OQH41_03530 PF07731 Multicopper oxidase OQH41_03530 PF00394 Multicopper oxidase OQH41_03535 PF05275 Copper resistance protein B precursor (CopB) OQH41_03545 PF00893 Small Multidrug Resistance protein OQH41_03550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain OQH41_03550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain OQH41_03555 PF01960 ArgJ family OQH41_03560 PF02445 Quinolinate synthetase A protein OQH41_03590 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system OQH41_03595 PF07927 HicA toxin of bacterial toxin-antitoxin, OQH41_03685 PF07484 Phage Tail Collar Domain OQH41_03685 PF03335 Phage tail fibre repeat OQH41_03685 PF08400 Prophage tail fibre N-terminal OQH41_03805 PF00436 Single-strand binding protein family OQH41_03815 PF12167 Arm DNA-binding domain OQH41_03815 PF00589 Phage integrase family OQH41_03825 PF00962 Adenosine/AMP deaminase OQH41_03830 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_03830 PF00107 Zinc-binding dehydrogenase OQH41_03835 PF03466 LysR substrate binding domain OQH41_03835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_03840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_03840 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_03840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_03845 PF07690 Major Facilitator Superfamily OQH41_03850 PF02515 CoA-transferase family III OQH41_03855 PF17932 Tetracyclin repressor-like, C-terminal domain OQH41_03855 PF00440 Bacterial regulatory proteins, tetR family OQH41_03870 PF14537 Cytochrome c3 OQH41_03870 PF00890 FAD binding domain OQH41_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_03875 PF03466 LysR substrate binding domain OQH41_03885 PF07690 Major Facilitator Superfamily OQH41_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_03890 PF03466 LysR substrate binding domain OQH41_03900 PF01546 Peptidase family M20/M25/M40 OQH41_03900 PF07687 Peptidase dimerisation domain OQH41_03905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term OQH41_03905 PF12833 Helix-turn-helix domain OQH41_03915 PF01810 LysE type translocator OQH41_03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_03920 PF03466 LysR substrate binding domain OQH41_03930 PF08267 Cobalamin-independent synthase, N-terminal domain OQH41_03930 PF01717 Cobalamin-independent synthase, Catalytic domain OQH41_03935 PF01613 Flavin reductase like domain OQH41_03965 PF17074 Darcynin, domain of unknown function OQH41_04000 PF02567 Phenazine biosynthesis-like protein OQH41_04015 PF00268 Ribonucleotide reductase, small chain OQH41_04025 PF02867 Ribonucleotide reductase, barrel domain OQH41_04025 PF00317 Ribonucleotide reductase, all-alpha domain OQH41_04025 PF03477 ATP cone domain OQH41_04035 PF00072 Response regulator receiver domain OQH41_04035 PF00486 Transcriptional regulatory protein, C terminal OQH41_04040 PF00672 HAMP domain OQH41_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_04040 PF00512 His Kinase A (phospho-acceptor) domain OQH41_04050 PF17151 Periplasmic sensor domain OQH41_04050 PF00990 Diguanylate cyclase, GGDEF domain OQH41_04055 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 OQH41_04060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit OQH41_04065 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit OQH41_04065 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit OQH41_04075 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit OQH41_04075 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region OQH41_04075 PF10531 SLBB domain OQH41_04080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain OQH41_04080 PF00384 Molybdopterin oxidoreductase OQH41_04080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region OQH41_04085 PF00146 NADH dehydrogenase OQH41_04090 PF12838 4Fe-4S dicluster domain OQH41_04095 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 OQH41_04100 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L OQH41_04105 PF00361 Proton-conducting membrane transporter OQH41_04105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OQH41_04110 PF00361 Proton-conducting membrane transporter OQH41_04115 PF00361 Proton-conducting membrane transporter OQH41_04125 PF00313 'Cold-shock' DNA-binding domain OQH41_04130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_04130 PF03466 LysR substrate binding domain OQH41_04135 PF00970 Oxidoreductase FAD-binding domain OQH41_04135 PF00175 Oxidoreductase NAD-binding domain OQH41_04150 PF05552 Conserved TM helix OQH41_04165 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_04170 PF13533 Biotin-lipoyl like OQH41_04195 PF09334 tRNA synthetases class I (M) OQH41_04195 PF01588 Putative tRNA binding domain OQH41_04205 PF10609 NUBPL iron-transfer P-loop NTPase OQH41_04210 PF01048 Phosphorylase superfamily OQH41_04225 PF00692 dUTPase OQH41_04255 PF01207 Dihydrouridine synthase (Dus) OQH41_04265 PF02978 Signal peptide binding domain OQH41_04265 PF00448 SRP54-type protein, GTPase domain OQH41_04265 PF02881 SRP54-type protein, helical bundle domain OQH41_04270 PF03309 Type III pantothenate kinase OQH41_04280 PF01925 Sulfite exporter TauE/SafE OQH41_04290 PF06470 SMC proteins Flexible Hinge Domain OQH41_04290 PF02463 RecF/RecN/SMC N terminal domain OQH41_04300 PF12826 Helix-hairpin-helix motif OQH41_04300 PF03120 NAD-dependent DNA ligase OB-fold domain OQH41_04300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain OQH41_04300 PF00533 BRCA1 C Terminus (BRCT) domain OQH41_04300 PF01653 NAD-dependent DNA ligase adenylation domain OQH41_04305 PF00210 Ferritin-like domain OQH41_04310 PF07690 Major Facilitator Superfamily OQH41_04315 PF00982 Glycosyltransferase family 20 OQH41_04320 PF02358 Trehalose-phosphatase OQH41_04325 PF12697 Alpha/beta hydrolase family OQH41_04325 PF08241 Methyltransferase domain OQH41_04330 PF04055 Radical SAM superfamily OQH41_04330 PF00202 Aminotransferase class-III OQH41_04330 PF06968 Biotin and Thiamin Synthesis associated domain OQH41_04335 PF00155 Aminotransferase class I and II OQH41_04350 PF00849 RNA pseudouridylate synthase OQH41_04350 PF01479 S4 domain OQH41_04355 PF04079 Segregation and condensation complex subunit ScpB OQH41_04360 PF02616 Segregation and condensation protein ScpA OQH41_04365 PF01300 Telomere recombination OQH41_04370 PF04315 Elongation factor P hydroxylase OQH41_04375 PF02620 Large ribosomal RNA subunit accumulation protein YceD OQH41_04380 PF01783 Ribosomal L32p protein family OQH41_04385 PF00698 Acyl transferase domain OQH41_04395 PF00550 Phosphopantetheine attachment site OQH41_04400 PF01476 LysM domain OQH41_04400 PF04972 BON domain OQH41_04405 PF08543 Phosphomethylpyrimidine kinase OQH41_04405 PF03070 TENA/THI-4/PQQC family OQH41_04405 PF02581 Thiamine monophosphate synthase OQH41_04415 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase OQH41_04430 PF02261 Aspartate decarboxylase OQH41_04435 PF01195 Peptidyl-tRNA hydrolase OQH41_04440 PF01386 Ribosomal L25p family OQH41_04445 PF14572 Phosphoribosyl synthetase-associated domain OQH41_04445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase OQH41_04470 PF08544 GHMP kinases C terminal OQH41_04470 PF00288 GHMP kinases N terminal domain OQH41_04475 PF03550 Outer membrane lipoprotein LolB OQH41_04485 PF01488 Shikimate / quinate 5-dehydrogenase OQH41_04485 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain OQH41_04485 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain OQH41_04490 PF10410 DnaB-helicase binding domain of primase OQH41_04490 PF08278 DNA primase DnaG DnaB-binding OQH41_04490 PF08275 DNA primase catalytic core, N-terminal domain OQH41_04490 PF01807 CHC2 zinc finger OQH41_04495 PF13525 Outer membrane lipoprotein OQH41_04500 PF00849 RNA pseudouridylate synthase OQH41_04500 PF01479 S4 domain OQH41_04505 PF02578 Multi-copper polyphenol oxidoreductase laccase OQH41_04510 PF03358 NADPH-dependent FMN reductase OQH41_04515 PF01668 SmpB protein OQH41_04520 PF01467 Cytidylyltransferase-like OQH41_04525 PF00037 4Fe-4S binding domain OQH41_04545 PF03466 LysR substrate binding domain OQH41_04545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_04550 PF00180 Isocitrate/isopropylmalate dehydrogenase OQH41_04555 PF02028 BCCT, betaine/carnitine/choline family transporter OQH41_04560 PF07859 alpha/beta hydrolase fold OQH41_04565 PF00355 Rieske [2Fe-2S] domain OQH41_04565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) OQH41_04570 PF00171 Aldehyde dehydrogenase family OQH41_04575 PF00970 Oxidoreductase FAD-binding domain OQH41_04575 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_04575 PF00175 Oxidoreductase NAD-binding domain OQH41_04590 PF00795 Carbon-nitrogen hydrolase OQH41_04590 PF02540 NAD synthase OQH41_04600 PF02678 Pirin OQH41_04600 PF05726 Pirin C-terminal cupin domain OQH41_04605 PF03653 Uncharacterised protein family (UPF0093) OQH41_04610 PF00109 Beta-ketoacyl synthase, N-terminal domain OQH41_04610 PF02801 Beta-ketoacyl synthase, C-terminal domain OQH41_04620 PF00164 Ribosomal protein S12/S23 OQH41_04625 PF00177 Ribosomal protein S7p/S5e OQH41_04630 PF00009 Elongation factor Tu GTP binding domain OQH41_04630 PF03764 Elongation factor G, domain IV OQH41_04630 PF03144 Elongation factor Tu domain 2 OQH41_04630 PF00679 Elongation factor G C-terminus OQH41_04630 PF14492 Elongation Factor G, domain II OQH41_04635 PF03143 Elongation factor Tu C-terminal domain OQH41_04635 PF03144 Elongation factor Tu domain 2 OQH41_04635 PF00009 Elongation factor Tu GTP binding domain OQH41_04650 PF00583 Acetyltransferase (GNAT) family OQH41_04655 PF04377 Arginine-tRNA-protein transferase, C terminus OQH41_04655 PF04376 Arginine-tRNA-protein transferase, N terminus OQH41_04660 PF03588 Leucyl/phenylalanyl-tRNA protein transferase OQH41_04665 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_04670 PF09397 Ftsk gamma domain OQH41_04670 PF01580 FtsK/SpoIIIE family OQH41_04670 PF17854 FtsK alpha domain OQH41_04670 PF13491 4TM region of DNA translocase FtsK/SpoIIIE OQH41_04675 PF01810 LysE type translocator OQH41_04685 PF03776 Septum formation topological specificity factor MinE OQH41_04690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain OQH41_04695 PF03775 Septum formation inhibitor MinC, C-terminal domain OQH41_04705 PF01553 Acyltransferase OQH41_04710 PF13488 Glycine zipper OQH41_04710 PF00691 OmpA family OQH41_04715 PF13361 UvrD-like helicase C-terminal domain OQH41_04715 PF00580 UvrD/REP helicase N-terminal domain OQH41_04720 PF00692 dUTPase OQH41_04725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III OQH41_04725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OQH41_04725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain OQH41_04725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II OQH41_04730 PF00696 Amino acid kinase family OQH41_04740 PF13230 Glutamine amidotransferases class-II OQH41_04745 PF01814 Hemerythrin HHE cation binding domain OQH41_04755 PF03658 RnfH family Ubiquitin OQH41_04760 PF04355 SmpA / OmlA family OQH41_04765 PF01475 Ferric uptake regulator family OQH41_04770 PF00437 Type II/IV secretion system protein OQH41_04775 PF00437 Type II/IV secretion system protein OQH41_04780 PF01168 Alanine racemase, N-terminal domain OQH41_04790 PF00149 Calcineurin-like phosphoesterase OQH41_04790 PF12320 Type 5 capsule protein repressor C-terminal domain OQH41_04810 PF01370 NAD dependent epimerase/dehydratase family OQH41_04810 PF08338 Domain of unknown function (DUF1731) OQH41_04815 PF01266 FAD dependent oxidoreductase OQH41_04820 PF00490 Delta-aminolevulinic acid dehydratase OQH41_04825 PF03061 Thioesterase superfamily OQH41_04830 PF13533 Biotin-lipoyl like OQH41_04835 PF07690 Major Facilitator Superfamily OQH41_04850 PF00589 Phage integrase family OQH41_04850 PF13356 Arm DNA-binding domain OQH41_04905 PF03354 Phage Terminase OQH41_04955 PF08671 Anti-repressor SinI OQH41_04955 PF01381 Helix-turn-helix OQH41_04980 PF00701 Dihydrodipicolinate synthetase family OQH41_05005 PF13520 Amino acid permease OQH41_05010 PF02574 Homocysteine S-methyltransferase OQH41_05020 PF06039 Malate:quinone oxidoreductase (Mqo) OQH41_05025 PF00732 GMC oxidoreductase OQH41_05025 PF05199 GMC oxidoreductase OQH41_05030 PF00171 Aldehyde dehydrogenase family OQH41_05035 PF13977 BetI-type transcriptional repressor, C-terminal OQH41_05035 PF00440 Bacterial regulatory proteins, tetR family OQH41_05040 PF02028 BCCT, betaine/carnitine/choline family transporter OQH41_05045 PF02028 BCCT, betaine/carnitine/choline family transporter OQH41_05055 PF03061 Thioesterase superfamily OQH41_05065 PF02492 CobW/HypB/UreG, nucleotide-binding domain OQH41_05065 PF07683 Cobalamin synthesis protein cobW C-terminal domain OQH41_05070 PF00375 Sodium:dicarboxylate symporter family OQH41_05075 PF07152 YaeQ protein OQH41_05080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OQH41_05085 PF01522 Polysaccharide deacetylase OQH41_05085 PF14883 Hypothetical glycosyl hydrolase family 13 OQH41_05090 PF00535 Glycosyl transferase family 2 OQH41_05100 PF00378 Enoyl-CoA hydratase/isomerase OQH41_05115 PF01614 Bacterial transcriptional regulator OQH41_05115 PF09339 IclR helix-turn-helix domain OQH41_05120 PF00355 Rieske [2Fe-2S] domain OQH41_05130 PF00355 Rieske [2Fe-2S] domain OQH41_05140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OQH41_05145 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_05145 PF14759 Reductase C-terminal OQH41_05150 PF07690 Major Facilitator Superfamily OQH41_05160 PF12697 Alpha/beta hydrolase family OQH41_05170 PF03447 Homoserine dehydrogenase, NAD binding domain OQH41_05170 PF01958 Domain of unknown function DUF108 OQH41_05175 PF00171 Aldehyde dehydrogenase family OQH41_05180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain OQH41_05180 PF00205 Thiamine pyrophosphate enzyme, central domain OQH41_05180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OQH41_05190 PF07690 Major Facilitator Superfamily OQH41_05195 PF01327 Polypeptide deformylase OQH41_05200 PF04960 Glutaminase OQH41_05205 PF12833 Helix-turn-helix domain OQH41_05205 PF02311 AraC-like ligand binding domain OQH41_05210 PF07690 Major Facilitator Superfamily OQH41_05215 PF01263 Aldose 1-epimerase OQH41_05225 PF03466 LysR substrate binding domain OQH41_05225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_05235 PF07690 Major Facilitator Superfamily OQH41_05240 PF00456 Transketolase, thiamine diphosphate binding domain OQH41_05245 PF02779 Transketolase, pyrimidine binding domain OQH41_05245 PF02780 Transketolase, C-terminal domain OQH41_05280 PF02310 B12 binding domain OQH41_05280 PF02607 B12 binding domain OQH41_05280 PF02965 Vitamin B12 dependent methionine synthase, activation domain OQH41_05280 PF00809 Pterin binding enzyme OQH41_05280 PF02574 Homocysteine S-methyltransferase OQH41_05285 PF01384 Phosphate transporter family OQH41_05290 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_05305 PF03781 Sulfatase-modifying factor enzyme 1 OQH41_05310 PF00884 Sulfatase OQH41_05320 PF01521 Iron-sulphur cluster biosynthesis OQH41_05320 PF01106 NifU-like domain OQH41_05325 PF07715 TonB-dependent Receptor Plug Domain OQH41_05325 PF00593 TonB dependent receptor OQH41_05335 PF00561 alpha/beta hydrolase fold OQH41_05340 PF00484 Carbonic anhydrase OQH41_05345 PF13472 GDSL-like Lipase/Acylhydrolase family OQH41_05350 PF00005 ABC transporter OQH41_05360 PF01694 Rhomboid family OQH41_05365 PF00912 Transglycosylase OQH41_05370 PF13090 Polyphosphate kinase C-terminal domain 2 OQH41_05370 PF17941 Polyphosphate kinase C-terminal domain 1 OQH41_05370 PF13089 Polyphosphate kinase N-terminal domain OQH41_05370 PF02503 Polyphosphate kinase middle domain OQH41_05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_05385 PF03466 LysR substrate binding domain OQH41_05390 PF00561 alpha/beta hydrolase fold OQH41_05395 PF18113 Rubredoxin binding C-terminal domain OQH41_05395 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_05400 PF00301 Rubredoxin OQH41_05415 PF00152 tRNA synthetases class II (D, K and N) OQH41_05415 PF01336 OB-fold nucleic acid binding domain OQH41_05420 PF14052 Capsule assembly protein Wzi OQH41_05430 PF01507 Phosphoadenosine phosphosulfate reductase family OQH41_05435 PF00009 Elongation factor Tu GTP binding domain OQH41_05450 PF03600 Citrate transporter OQH41_05455 PF00571 CBS domain OQH41_05455 PF03471 Transporter associated domain OQH41_05455 PF01595 Cyclin M transmembrane N-terminal domain OQH41_05460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_05460 PF03466 LysR substrate binding domain OQH41_05465 PF00463 Isocitrate lyase family OQH41_05480 PF01774 UreD urease accessory protein OQH41_05485 PF00547 Urease, gamma subunit OQH41_05490 PF00699 Urease beta subunit OQH41_05495 PF00449 Urease alpha-subunit, N-terminal domain OQH41_05495 PF01979 Amidohydrolase family OQH41_05500 PF05194 UreE urease accessory protein, C-terminal domain OQH41_05500 PF02814 UreE urease accessory protein, N-terminal domain OQH41_05505 PF01730 UreF OQH41_05510 PF02492 CobW/HypB/UreG, nucleotide-binding domain OQH41_05525 PF03717 Penicillin-binding Protein dimerisation domain OQH41_05525 PF00905 Penicillin binding protein transpeptidase domain OQH41_05540 PF05191 Adenylate kinase, active site lid OQH41_05550 PF10576 Iron-sulfur binding domain of endonuclease III OQH41_05550 PF00633 Helix-hairpin-helix motif OQH41_05550 PF00730 HhH-GPD superfamily base excision DNA repair protein OQH41_05555 PF04060 Putative Fe-S cluster OQH41_05560 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain OQH41_05560 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase OQH41_05570 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase OQH41_05575 PF02590 Predicted SPOUT methyltransferase OQH41_05580 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_05580 PF05362 Lon protease (S16) C-terminal proteolytic domain OQH41_05580 PF02190 ATP-dependent protease La (LON) substrate-binding domain OQH41_05585 PF13018 Extended Signal Peptide of Type V secretion system OQH41_05585 PF03895 YadA-like membrane anchor domain OQH41_05585 PF05658 Head domain of trimeric autotransporter adhesin OQH41_05585 PF05662 Coiled stalk of trimeric autotransporter adhesin OQH41_05590 PF00691 OmpA family OQH41_05590 PF04355 SmpA / OmlA family OQH41_05595 PF05662 Coiled stalk of trimeric autotransporter adhesin OQH41_05595 PF05658 Head domain of trimeric autotransporter adhesin OQH41_05595 PF03895 YadA-like membrane anchor domain OQH41_05595 PF13018 Extended Signal Peptide of Type V secretion system OQH41_05595 PF03895 YadA-like membrane anchor domain OQH41_05595 PF05658 Head domain of trimeric autotransporter adhesin OQH41_05595 PF13018 Extended Signal Peptide of Type V secretion system OQH41_05595 PF05662 Coiled stalk of trimeric autotransporter adhesin OQH41_05600 PF04355 SmpA / OmlA family OQH41_05600 PF00691 OmpA family OQH41_05605 PF01812 5-formyltetrahydrofolate cyclo-ligase family OQH41_05645 PF05195 Aminopeptidase P, N-terminal domain OQH41_05645 PF00557 Metallopeptidase family M24 OQH41_05650 PF01494 FAD binding domain OQH41_05655 PF01494 FAD binding domain OQH41_05675 PF01810 LysE type translocator OQH41_05680 PF03466 LysR substrate binding domain OQH41_05680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_05690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases OQH41_05695 PF02021 Uncharacterised protein family UPF0102 OQH41_05700 PF04972 BON domain OQH41_05710 PF00293 NUDIX domain OQH41_05710 PF09297 NADH pyrophosphatase zinc ribbon domain OQH41_05720 PF00929 Exonuclease OQH41_05725 PF01464 Transglycosylase SLT domain OQH41_05725 PF01464 Transglycosylase SLT domain OQH41_05725 PF01476 LysM domain OQH41_05725 PF01476 LysM domain OQH41_05730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle OQH41_05735 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_05740 PF12911 N-terminal TM domain of oligopeptide transport permease C OQH41_05740 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_05745 PF00005 ABC transporter OQH41_05745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region OQH41_05750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OQH41_05750 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_05755 PF07715 TonB-dependent Receptor Plug Domain OQH41_05755 PF00593 TonB dependent receptor OQH41_05765 PF00929 Exonuclease OQH41_05770 PF01979 Amidohydrolase family OQH41_05775 PF00360 Phytochrome region OQH41_05775 PF01590 GAF domain OQH41_05775 PF00563 EAL domain OQH41_05775 PF00990 Diguanylate cyclase, GGDEF domain OQH41_05780 PF00764 Arginosuccinate synthase OQH41_05785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OQH41_05785 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_05795 PF00515 Tetratricopeptide repeat OQH41_05795 PF13176 Tetratricopeptide repeat OQH41_05805 PF01042 Endoribonuclease L-PSP OQH41_05810 PF01266 FAD dependent oxidoreductase OQH41_05815 PF03466 LysR substrate binding domain OQH41_05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_05825 PF03180 NLPA lipoprotein OQH41_05830 PF13333 Integrase core domain OQH41_05830 PF00665 Integrase core domain OQH41_05830 PF13276 HTH-like domain OQH41_05845 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) OQH41_05845 PF04717 Type VI secretion system, phage-baseplate injector OQH41_05845 PF13296 Putative type VI secretion system Rhs element Vgr OQH41_05910 PF03527 RHS protein OQH41_05970 PF03050 Transposase IS66 family OQH41_05970 PF13817 IS66 C-terminal element OQH41_05970 PF13007 Transposase C of IS166 homeodomain OQH41_05970 PF13005 zinc-finger binding domain of transposase IS66 OQH41_05990 PF00324 Amino acid permease OQH41_05995 PF01266 FAD dependent oxidoreductase OQH41_06000 PF00324 Amino acid permease OQH41_06010 PF00392 Bacterial regulatory proteins, gntR family OQH41_06010 PF07729 FCD domain OQH41_06020 PF00171 Aldehyde dehydrogenase family OQH41_06030 PF00202 Aminotransferase class-III OQH41_06040 PF00324 Amino acid permease OQH41_06045 PF00171 Aldehyde dehydrogenase family OQH41_06050 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term OQH41_06050 PF12833 Helix-turn-helix domain OQH41_06055 PF00892 EamA-like transporter family OQH41_06060 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus OQH41_06060 PF08666 SAF domain OQH41_06065 PF07690 Major Facilitator Superfamily OQH41_06070 PF13378 Enolase C-terminal domain-like OQH41_06075 PF00701 Dihydrodipicolinate synthetase family OQH41_06080 PF00171 Aldehyde dehydrogenase family OQH41_06085 PF07729 FCD domain OQH41_06085 PF00392 Bacterial regulatory proteins, gntR family OQH41_06090 PF07519 Tannase and feruloyl esterase OQH41_06105 PF03573 outer membrane porin, OprD family OQH41_06110 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_06110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_06110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_06120 PF00171 Aldehyde dehydrogenase family OQH41_06125 PF00378 Enoyl-CoA hydratase/isomerase OQH41_06130 PF07690 Major Facilitator Superfamily OQH41_06145 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_06145 PF00175 Oxidoreductase NAD-binding domain OQH41_06150 PF00355 Rieske [2Fe-2S] domain OQH41_06160 PF03781 Sulfatase-modifying factor enzyme 1 OQH41_06165 PF00884 Sulfatase OQH41_06170 PF07690 Major Facilitator Superfamily OQH41_06175 PF03573 outer membrane porin, OprD family OQH41_06180 PF05199 GMC oxidoreductase OQH41_06185 PF07859 alpha/beta hydrolase fold OQH41_06195 PF00743 Flavin-binding monooxygenase-like OQH41_06200 PF12833 Helix-turn-helix domain OQH41_06205 PF04072 Leucine carboxyl methyltransferase OQH41_06210 PF00743 Flavin-binding monooxygenase-like OQH41_06215 PF00106 short chain dehydrogenase OQH41_06225 PF17932 Tetracyclin repressor-like, C-terminal domain OQH41_06225 PF00440 Bacterial regulatory proteins, tetR family OQH41_06230 PF17954 Quercetinase C-terminal cupin domain OQH41_06230 PF02678 Pirin OQH41_06240 PF00106 short chain dehydrogenase OQH41_06245 PF00743 Flavin-binding monooxygenase-like OQH41_06255 PF00860 Permease family OQH41_06260 PF00962 Adenosine/AMP deaminase OQH41_06280 PF01351 Ribonuclease HII OQH41_06285 PF02599 Global regulator protein family OQH41_06290 PF13840 ACT domain OQH41_06290 PF00696 Amino acid kinase family OQH41_06290 PF01842 ACT domain OQH41_06295 PF01411 tRNA synthetases class II (A) OQH41_06295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain OQH41_06295 PF02272 DHHA1 domain OQH41_06300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain OQH41_06300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain OQH41_06305 PF13393 Histidyl-tRNA synthetase OQH41_06310 PF00709 Adenylosuccinate synthetase OQH41_06325 PF00248 Aldo/keto reductase family OQH41_06330 PF00027 Cyclic nucleotide-binding domain OQH41_06330 PF13545 Crp-like helix-turn-helix domain OQH41_06340 PF02566 OsmC-like protein OQH41_06355 PF07724 AAA domain (Cdc48 subfamily) OQH41_06355 PF02861 Clp amino terminal domain, pathogenicity island component OQH41_06355 PF10431 C-terminal, D2-small domain, of ClpB protein OQH41_06355 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_06355 PF17871 AAA lid domain OQH41_06370 PF10672 S-adenosylmethionine-dependent methyltransferase OQH41_06370 PF02926 THUMP domain OQH41_06370 PF01170 Putative RNA methylase family UPF0020 OQH41_06380 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OQH41_06380 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OQH41_06385 PF01979 Amidohydrolase family OQH41_06390 PF00691 OmpA family OQH41_06390 PF13488 Glycine zipper OQH41_06400 PF00043 Glutathione S-transferase, C-terminal domain OQH41_06400 PF13417 Glutathione S-transferase, N-terminal domain OQH41_06405 PF02390 Putative methyltransferase OQH41_06415 PF00043 Glutathione S-transferase, C-terminal domain OQH41_06415 PF02798 Glutathione S-transferase, N-terminal domain OQH41_06425 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_06425 PF13192 Thioredoxin domain OQH41_06445 PF10417 C-terminal domain of 1-Cys peroxiredoxin OQH41_06445 PF00578 AhpC/TSA family OQH41_06450 PF00270 DEAD/DEAH box helicase OQH41_06450 PF11898 Domain of unknown function (DUF3418) OQH41_06450 PF04408 Helicase associated domain (HA2) OQH41_06450 PF00271 Helicase conserved C-terminal domain OQH41_06450 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold OQH41_06455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal OQH41_06455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OQH41_06465 PF07690 Major Facilitator Superfamily OQH41_06470 PF03594 Benzoate membrane transport protein OQH41_06475 PF00106 short chain dehydrogenase OQH41_06480 PF00175 Oxidoreductase NAD-binding domain OQH41_06480 PF00970 Oxidoreductase FAD-binding domain OQH41_06480 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_06490 PF00848 Ring hydroxylating alpha subunit (catalytic domain) OQH41_06490 PF00355 Rieske [2Fe-2S] domain OQH41_06500 PF03466 LysR substrate binding domain OQH41_06500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_06510 PF00403 Heavy-metal-associated domain OQH41_06515 PF09278 MerR, DNA binding OQH41_06515 PF00376 MerR family regulatory protein OQH41_06550 PF13742 OB-fold nucleic acid binding domain OQH41_06550 PF02601 Exonuclease VII, large subunit OQH41_06580 PF01810 LysE type translocator OQH41_06585 PF00313 'Cold-shock' DNA-binding domain OQH41_06595 PF14748 Pyrroline-5-carboxylate reductase dimerisation OQH41_06595 PF03807 NADP oxidoreductase coenzyme F420-dependent OQH41_06620 PF07690 Major Facilitator Superfamily OQH41_06625 PF01638 HxlR-like helix-turn-helix OQH41_06660 PF09190 DALR domain OQH41_06660 PF01406 tRNA synthetases class I (C) catalytic domain OQH41_06665 PF01380 SIS domain OQH41_06665 PF00571 CBS domain OQH41_06680 PF03968 OstA-like protein OQH41_06685 PF12399 Branched-chain amino acid ATP-binding cassette transporter OQH41_06685 PF00005 ABC transporter OQH41_06690 PF02321 Outer membrane efflux protein OQH41_06695 PF00664 ABC transporter transmembrane region OQH41_06695 PF00005 ABC transporter OQH41_06695 PF03412 Peptidase C39 family OQH41_06705 PF01205 Uncharacterized protein family UPF0029 OQH41_06710 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_06720 PF01596 O-methyltransferase OQH41_06730 PF00037 4Fe-4S binding domain OQH41_06730 PF11953 Domain of unknown function (DUF3470) OQH41_06740 PF01624 MutS domain I OQH41_06740 PF05192 MutS domain III OQH41_06740 PF05190 MutS family domain IV OQH41_06740 PF00488 MutS domain V OQH41_06740 PF05188 MutS domain II OQH41_06745 PF01037 Lrp/AsnC ligand binding domain OQH41_06750 PF00892 EamA-like transporter family OQH41_06755 PF00563 EAL domain OQH41_06755 PF00990 Diguanylate cyclase, GGDEF domain OQH41_06755 PF03707 Bacterial signalling protein N terminal repeat OQH41_06760 PF03279 Bacterial lipid A biosynthesis acyltransferase OQH41_06775 PF07690 Major Facilitator Superfamily OQH41_06795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OQH41_06795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OQH41_06815 PF13419 Haloacid dehalogenase-like hydrolase OQH41_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_06930 PF03466 LysR substrate binding domain OQH41_06935 PF01566 Natural resistance-associated macrophage protein OQH41_06940 PF03746 LamB/YcsF family OQH41_06945 PF07286 Protein of unknown function (DUF1445) OQH41_06955 PF00289 Biotin carboxylase, N-terminal domain OQH41_06955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OQH41_06955 PF02785 Biotin carboxylase C-terminal domain OQH41_06955 PF00364 Biotin-requiring enzyme OQH41_06960 PF00654 Voltage gated chloride channel OQH41_06965 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB OQH41_06965 PF17287 POTRA domain OQH41_06965 PF08479 POTRA domain, ShlB-type OQH41_06970 PF13018 Extended Signal Peptide of Type V secretion system OQH41_06970 PF05860 haemagglutination activity domain OQH41_06970 PF13332 Hemagglutinin repeat OQH41_06970 PF04829 Pre-toxin domain with VENN motif OQH41_06990 PF00665 Integrase core domain OQH41_06990 PF13276 HTH-like domain OQH41_06990 PF13333 Integrase core domain OQH41_07015 PF00694 Aconitase C-terminal domain OQH41_07020 PF00330 Aconitase family (aconitate hydratase) OQH41_07030 PF02515 CoA-transferase family III OQH41_07035 PF00682 HMGL-like OQH41_07040 PF07690 Major Facilitator Superfamily OQH41_07045 PF00199 Catalase OQH41_07050 PF01292 Prokaryotic cytochrome b561 OQH41_07070 PF12697 Alpha/beta hydrolase family OQH41_07075 PF01613 Flavin reductase like domain OQH41_07080 PF00296 Luciferase-like monooxygenase OQH41_07085 PF00171 Aldehyde dehydrogenase family OQH41_07095 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin OQH41_07105 PF00171 Aldehyde dehydrogenase family OQH41_07110 PF02627 Carboxymuconolactone decarboxylase family OQH41_07115 PF03466 LysR substrate binding domain OQH41_07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07120 PF02525 Flavodoxin-like fold OQH41_07125 PF01614 Bacterial transcriptional regulator OQH41_07125 PF09339 IclR helix-turn-helix domain OQH41_07130 PF01494 FAD binding domain OQH41_07135 PF00392 Bacterial regulatory proteins, gntR family OQH41_07135 PF07702 UTRA domain OQH41_07145 PF00005 ABC transporter OQH41_07145 PF08402 TOBE domain OQH41_07150 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07155 PF01266 FAD dependent oxidoreductase OQH41_07160 PF00266 Aminotransferase class-V OQH41_07165 PF13419 Haloacid dehalogenase-like hydrolase OQH41_07170 PF07690 Major Facilitator Superfamily OQH41_07175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_07175 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_07175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_07180 PF02515 CoA-transferase family III OQH41_07185 PF09339 IclR helix-turn-helix domain OQH41_07190 PF00378 Enoyl-CoA hydratase/isomerase OQH41_07195 PF03060 Nitronate monooxygenase OQH41_07200 PF07690 Major Facilitator Superfamily OQH41_07205 PF09339 IclR helix-turn-helix domain OQH41_07210 PF00108 Thiolase, N-terminal domain OQH41_07210 PF02803 Thiolase, C-terminal domain OQH41_07215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OQH41_07215 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain OQH41_07215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OQH41_07225 PF00378 Enoyl-CoA hydratase/isomerase OQH41_07230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_07230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_07230 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_07235 PF07690 Major Facilitator Superfamily OQH41_07240 PF01144 Coenzyme A transferase OQH41_07245 PF01144 Coenzyme A transferase OQH41_07255 PF07690 Major Facilitator Superfamily OQH41_07265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_07265 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_07265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_07265 PF12806 Acetyl-CoA dehydrogenase C-terminal like OQH41_07280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07280 PF03466 LysR substrate binding domain OQH41_07285 PF00682 HMGL-like OQH41_07290 PF02785 Biotin carboxylase C-terminal domain OQH41_07290 PF00289 Biotin carboxylase, N-terminal domain OQH41_07290 PF00364 Biotin-requiring enzyme OQH41_07290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OQH41_07290 PF18140 Propionyl-coenzyme A carboxylase BT domain OQH41_07295 PF00378 Enoyl-CoA hydratase/isomerase OQH41_07300 PF01039 Carboxyl transferase domain OQH41_07305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_07305 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_07305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_07310 PF00440 Bacterial regulatory proteins, tetR family OQH41_07315 PF00501 AMP-binding enzyme OQH41_07315 PF13193 AMP-binding enzyme C-terminal domain OQH41_07335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07335 PF03466 LysR substrate binding domain OQH41_07370 PF18146 Damage-inducible protein CinA KH domain OQH41_07370 PF00994 Probable molybdopterin binding domain OQH41_07370 PF02464 Competence-damaged protein OQH41_07380 PF18011 C-terminal domain found in long catalases OQH41_07380 PF00199 Catalase OQH41_07380 PF06628 Catalase-related immune-responsive OQH41_07415 PF00717 Peptidase S24-like OQH41_07425 PF01037 Lrp/AsnC ligand binding domain OQH41_07425 PF13404 AsnC-type helix-turn-helix domain OQH41_07435 PF00072 Response regulator receiver domain OQH41_07435 PF09308 LuxQ, periplasmic OQH41_07435 PF00512 His Kinase A (phospho-acceptor) domain OQH41_07435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_07440 PF00072 Response regulator receiver domain OQH41_07455 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07460 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07465 PF00005 ABC transporter OQH41_07470 PF00497 Bacterial extracellular solute-binding proteins, family 3 OQH41_07475 PF00497 Bacterial extracellular solute-binding proteins, family 3 OQH41_07485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07485 PF03466 LysR substrate binding domain OQH41_07490 PF01810 LysE type translocator OQH41_07495 PF00266 Aminotransferase class-V OQH41_07505 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_07510 PF00581 Rhodanese-like domain OQH41_07520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07520 PF03466 LysR substrate binding domain OQH41_07525 PF02798 Glutathione S-transferase, N-terminal domain OQH41_07530 PF14834 Glutathione S-transferase, C-terminal domain OQH41_07530 PF02798 Glutathione S-transferase, N-terminal domain OQH41_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07535 PF03466 LysR substrate binding domain OQH41_07540 PF03788 LrgA family OQH41_07545 PF04172 LrgB-like family OQH41_07550 PF00155 Aminotransferase class I and II OQH41_07550 PF00392 Bacterial regulatory proteins, gntR family OQH41_07565 PF07690 Major Facilitator Superfamily OQH41_07575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07575 PF03466 LysR substrate binding domain OQH41_07580 PF16957 Malonate decarboxylase, alpha subunit, transporter OQH41_07585 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase OQH41_07590 PF06857 Malonate decarboxylase delta subunit (MdcD) OQH41_07595 PF01039 Carboxyl transferase domain OQH41_07605 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG OQH41_07610 PF00698 Acyl transferase domain OQH41_07625 PF03466 LysR substrate binding domain OQH41_07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07630 PF00392 Bacterial regulatory proteins, gntR family OQH41_07630 PF00155 Aminotransferase class I and II OQH41_07640 PF02322 Cytochrome bd terminal oxidase subunit II OQH41_07645 PF01654 Cytochrome bd terminal oxidase subunit I OQH41_07660 PF00296 Luciferase-like monooxygenase OQH41_07665 PF00083 Sugar (and other) transporter OQH41_07675 PF04069 Substrate binding domain of ABC-type glycine betaine transport system OQH41_07680 PF00005 ABC transporter OQH41_07685 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07690 PF02668 Taurine catabolism dioxygenase TauD, TfdA family OQH41_07695 PF01177 Asp/Glu/Hydantoin racemase OQH41_07700 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin OQH41_07710 PF03466 LysR substrate binding domain OQH41_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07720 PF01979 Amidohydrolase family OQH41_07720 PF13382 Adenine deaminase C-terminal domain OQH41_07730 PF03960 ArsC family OQH41_07735 PF01022 Bacterial regulatory protein, arsR family OQH41_07740 PF01758 Sodium Bile acid symporter family OQH41_07745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07745 PF03466 LysR substrate binding domain OQH41_07760 PF13192 Thioredoxin domain OQH41_07760 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_07775 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_07780 PF00588 SpoU rRNA Methylase family OQH41_07785 PF07733 Bacterial DNA polymerase III alpha NTPase domain OQH41_07785 PF01336 OB-fold nucleic acid binding domain OQH41_07785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain OQH41_07785 PF02811 PHP domain OQH41_07785 PF14579 Helix-hairpin-helix motif OQH41_07790 PF17763 Glutaminase/Asparaginase C-terminal domain OQH41_07790 PF00710 Asparaginase, N-terminal OQH41_07795 PF00375 Sodium:dicarboxylate symporter family OQH41_07800 PF00155 Aminotransferase class I and II OQH41_07805 PF01641 SelR domain OQH41_07810 PF00255 Glutathione peroxidase OQH41_07815 PF12833 Helix-turn-helix domain OQH41_07815 PF12852 Cupin OQH41_07825 PF00155 Aminotransferase class I and II OQH41_07830 PF01909 Nucleotidyltransferase domain OQH41_07830 PF01966 HD domain OQH41_07830 PF08335 GlnD PII-uridylyltransferase OQH41_07835 PF02222 ATP-grasp domain OQH41_07845 PF05437 Branched-chain amino acid transport protein (AzlD) OQH41_07850 PF03591 AzlC protein OQH41_07875 PF01926 50S ribosome-binding GTPase OQH41_07875 PF06071 Protein of unknown function (DUF933) OQH41_07880 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07885 PF00005 ABC transporter OQH41_07885 PF09383 NIL domain OQH41_07890 PF03180 NLPA lipoprotein OQH41_07895 PF03180 NLPA lipoprotein OQH41_07900 PF00296 Luciferase-like monooxygenase OQH41_07910 PF08028 Acyl-CoA dehydrogenase, C-terminal domain OQH41_07910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_07925 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07930 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_07935 PF00005 ABC transporter OQH41_07945 PF01037 Lrp/AsnC ligand binding domain OQH41_07950 PF01709 Transcriptional regulator OQH41_07960 PF00440 Bacterial regulatory proteins, tetR family OQH41_07980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_07980 PF03466 LysR substrate binding domain OQH41_07990 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin OQH41_08000 PF00892 EamA-like transporter family OQH41_08015 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term OQH41_08015 PF12833 Helix-turn-helix domain OQH41_08030 PF13953 PapC C-terminal domain OQH41_08030 PF13954 PapC N-terminal domain OQH41_08030 PF00577 Outer membrane usher protein OQH41_08035 PF02753 Pili assembly chaperone PapD, C-terminal domain OQH41_08035 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain OQH41_08040 PF16970 Type-1 fimbrial protein, A OQH41_08055 PF06968 Biotin and Thiamin Synthesis associated domain OQH41_08055 PF04055 Radical SAM superfamily OQH41_08060 PF08331 Domain of unknown function (DUF1730) OQH41_08065 PF01256 Carbohydrate kinase OQH41_08065 PF03853 YjeF-related protein N-terminus OQH41_08070 PF02075 Crossover junction endodeoxyribonuclease RuvC OQH41_08085 PF00905 Penicillin binding protein transpeptidase domain OQH41_08105 PF00438 S-adenosylmethionine synthetase, N-terminal domain OQH41_08105 PF02772 S-adenosylmethionine synthetase, central domain OQH41_08105 PF02773 S-adenosylmethionine synthetase, C-terminal domain OQH41_08110 PF00456 Transketolase, thiamine diphosphate binding domain OQH41_08110 PF02780 Transketolase, C-terminal domain OQH41_08110 PF02779 Transketolase, pyrimidine binding domain OQH41_08120 PF04264 YceI-like domain OQH41_08130 PF09992 Phosphodiester glycosidase OQH41_08140 PF05958 tRNA (Uracil-5-)-methyltransferase OQH41_08145 PF04229 GrpB protein OQH41_08150 PF00171 Aldehyde dehydrogenase family OQH41_08150 PF01619 Proline dehydrogenase OQH41_08150 PF18327 Proline utilization A proline dehydrogenase N-terminal domain OQH41_08150 PF14850 DNA-binding domain of Proline dehydrogenase OQH41_08155 PF01037 Lrp/AsnC ligand binding domain OQH41_08160 PF00474 Sodium:solute symporter family OQH41_08165 PF02146 Sir2 family OQH41_08170 PF01597 Glycine cleavage H-protein OQH41_08175 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term OQH41_08175 PF12833 Helix-turn-helix domain OQH41_08185 PF00664 ABC transporter transmembrane region OQH41_08185 PF00005 ABC transporter OQH41_08190 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) OQH41_08195 PF06912 Protein of unknown function (DUF1275) OQH41_08200 PF00375 Sodium:dicarboxylate symporter family OQH41_08215 PF08007 Cupin superfamily protein OQH41_08220 PF02545 Maf-like protein OQH41_08230 PF00162 Phosphoglycerate kinase OQH41_08240 PF01116 Fructose-bisphosphate aldolase class-II OQH41_08245 PF00639 PPIC-type PPIASE domain OQH41_08245 PF09312 SurA N-terminal domain OQH41_08250 PF04453 LPS transport system D OQH41_08250 PF03968 OstA-like protein OQH41_08255 PF01636 Phosphotransferase enzyme family OQH41_08260 PF00483 Nucleotidyl transferase OQH41_08265 PF02527 rRNA small subunit methyltransferase G OQH41_08270 PF13614 AAA domain OQH41_08275 PF17762 HTH domain found in ParB protein OQH41_08275 PF02195 ParB-like nuclease domain OQH41_08280 PF01618 MotA/TolQ/ExbB proton channel family OQH41_08290 PF00664 ABC transporter transmembrane region OQH41_08290 PF00005 ABC transporter OQH41_08295 PF02606 Tetraacyldisaccharide-1-P 4'-kinase OQH41_08300 PF02348 Cytidylyltransferase OQH41_08305 PF09115 DNA polymerase III, delta subunit, C terminal OQH41_08315 PF01026 TatD related DNase OQH41_08330 PF02501 Type II secretion system (T2SS), protein I OQH41_08330 PF07963 Prokaryotic N-terminal methylation motif OQH41_08335 PF07963 Prokaryotic N-terminal methylation motif OQH41_08335 PF11612 Type II secretion system (T2SS), protein J OQH41_08340 PF03934 Type II secretion system (T2SS), protein K OQH41_08350 PF03167 Uracil DNA glycosylase superfamily OQH41_08360 PF14437 MafB19-like deaminase OQH41_08370 PF02224 Cytidylate kinase OQH41_08375 PF00575 S1 RNA binding domain OQH41_08380 PF00216 Bacterial DNA-binding protein OQH41_08390 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family OQH41_08400 PF00743 Flavin-binding monooxygenase-like OQH41_08410 PF03969 AFG1-like ATPase OQH41_08415 PF01274 Malate synthase OQH41_08420 PF02472 Biopolymer transport protein ExbD/TolR OQH41_08425 PF02472 Biopolymer transport protein ExbD/TolR OQH41_08430 PF01618 MotA/TolQ/ExbB proton channel family OQH41_08440 PF07715 TonB-dependent Receptor Plug Domain OQH41_08440 PF00593 TonB dependent receptor OQH41_08455 PF01432 Peptidase family M3 OQH41_08460 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_08465 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_08470 PF00005 ABC transporter OQH41_08470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region OQH41_08485 PF00459 Inositol monophosphatase family OQH41_08495 PF01649 Ribosomal protein S20 OQH41_08500 PF13460 NAD(P)H-binding OQH41_08505 PF03737 Aldolase/RraA OQH41_08525 PF17757 UvrB interaction domain OQH41_08525 PF02559 CarD-like/TRCF domain OQH41_08525 PF00270 DEAD/DEAH box helicase OQH41_08525 PF00271 Helicase conserved C-terminal domain OQH41_08525 PF03461 TRCF domain OQH41_08535 PF00211 Adenylate and Guanylate cyclase catalytic domain OQH41_08540 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_08545 PF00012 Hsp70 protein OQH41_08550 PF07743 HSCB C-terminal oligomerisation domain OQH41_08550 PF00226 DnaJ domain OQH41_08555 PF01521 Iron-sulphur cluster biosynthesis OQH41_08560 PF01592 NifU-like N terminal domain OQH41_08565 PF00266 Aminotransferase class-V OQH41_08570 PF02082 Transcriptional regulator OQH41_08585 PF00216 Bacterial DNA-binding protein OQH41_08590 PF00639 PPIC-type PPIASE domain OQH41_08590 PF09312 SurA N-terminal domain OQH41_08595 PF12852 Cupin OQH41_08595 PF12833 Helix-turn-helix domain OQH41_08600 PF00487 Fatty acid desaturase OQH41_08605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_08605 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_08605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_08610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_08610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_08610 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_08615 PF03109 ABC1 family OQH41_08625 PF04073 Aminoacyl-tRNA editing domain OQH41_08630 PF06276 Ferric iron reductase FhuF-like transporter OQH41_08630 PF04183 IucA / IucC family OQH41_08635 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) OQH41_08640 PF07690 Major Facilitator Superfamily OQH41_08645 PF06276 Ferric iron reductase FhuF-like transporter OQH41_08645 PF04183 IucA / IucC family OQH41_08650 PF06276 Ferric iron reductase FhuF-like transporter OQH41_08650 PF04183 IucA / IucC family OQH41_08660 PF03737 Aldolase/RraA OQH41_08665 PF00593 TonB dependent receptor OQH41_08665 PF07715 TonB-dependent Receptor Plug Domain OQH41_08690 PF13419 Haloacid dehalogenase-like hydrolase OQH41_08700 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase OQH41_08705 PF02277 Phosphoribosyltransferase OQH41_08710 PF00300 Histidine phosphatase superfamily (branch 1) OQH41_08720 PF02654 Cobalamin-5-phosphate synthase OQH41_08725 PF00793 DAHP synthetase I family OQH41_08730 PF01925 Sulfite exporter TauE/SafE OQH41_08745 PF13007 Transposase C of IS166 homeodomain OQH41_08745 PF13817 IS66 C-terminal element OQH41_08745 PF03050 Transposase IS66 family OQH41_08745 PF13005 zinc-finger binding domain of transposase IS66 OQH41_08765 PF00593 TonB dependent receptor OQH41_08765 PF07715 TonB-dependent Receptor Plug Domain OQH41_08770 PF02684 Lipid-A-disaccharide synthetase OQH41_08780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_08785 PF00005 ABC transporter OQH41_08820 PF01230 HIT domain OQH41_08850 PF08241 Methyltransferase domain OQH41_08855 PF00561 alpha/beta hydrolase fold OQH41_08860 PF01053 Cys/Met metabolism PLP-dependent enzyme OQH41_08870 PF02575 YbaB/EbfC DNA-binding family OQH41_08875 PF02132 RecR protein OQH41_08875 PF13662 Toprim domain OQH41_08880 PF01612 3'-5' exonuclease OQH41_08880 PF00570 HRDC domain OQH41_08900 PF05166 YcgL domain OQH41_08910 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_08910 PF01434 Peptidase family M41 OQH41_08910 PF17862 AAA+ lid domain OQH41_08920 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_08925 PF05175 Methyltransferase small domain OQH41_08930 PF01264 Chorismate synthase OQH41_08935 PF00990 Diguanylate cyclase, GGDEF domain OQH41_08935 PF08448 PAS fold OQH41_08950 PF04055 Radical SAM superfamily OQH41_08955 PF00676 Dehydrogenase E1 component OQH41_08960 PF02779 Transketolase, pyrimidine binding domain OQH41_08960 PF02780 Transketolase, C-terminal domain OQH41_08965 PF02817 e3 binding domain OQH41_08965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OQH41_08965 PF00364 Biotin-requiring enzyme OQH41_08970 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_08970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OQH41_08975 PF00106 short chain dehydrogenase OQH41_08980 PF00107 Zinc-binding dehydrogenase OQH41_08980 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_08985 PF01062 Bestrophin, RFP-TM, chloride channel OQH41_08990 PF02954 Bacterial regulatory protein, Fis family OQH41_08990 PF00072 Response regulator receiver domain OQH41_08990 PF00158 Sigma-54 interaction domain OQH41_08995 PF00753 Metallo-beta-lactamase superfamily OQH41_08995 PF04273 Putative phosphatase (DUF442) OQH41_09010 PF01925 Sulfite exporter TauE/SafE OQH41_09025 PF06445 GyrI-like small molecule binding domain OQH41_09025 PF12833 Helix-turn-helix domain OQH41_09030 PF01638 HxlR-like helix-turn-helix OQH41_09035 PF02525 Flavodoxin-like fold OQH41_09045 PF00392 Bacterial regulatory proteins, gntR family OQH41_09045 PF07702 UTRA domain OQH41_09060 PF04069 Substrate binding domain of ABC-type glycine betaine transport system OQH41_09065 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_09070 PF00005 ABC transporter OQH41_09085 PF00083 Sugar (and other) transporter OQH41_09090 PF07715 TonB-dependent Receptor Plug Domain OQH41_09090 PF00593 TonB dependent receptor OQH41_09095 PF00206 Lyase OQH41_09095 PF10415 Fumarase C C-terminus OQH41_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09125 PF03466 LysR substrate binding domain OQH41_09130 PF02803 Thiolase, C-terminal domain OQH41_09130 PF00108 Thiolase, N-terminal domain OQH41_09135 PF02667 Short chain fatty acid transporter OQH41_09140 PF01144 Coenzyme A transferase OQH41_09145 PF01144 Coenzyme A transferase OQH41_09150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09150 PF03466 LysR substrate binding domain OQH41_09170 PF06719 AraC-type transcriptional regulator N-terminus OQH41_09170 PF12833 Helix-turn-helix domain OQH41_09175 PF07690 Major Facilitator Superfamily OQH41_09180 PF01738 Dienelactone hydrolase family OQH41_09195 PF01613 Flavin reductase like domain OQH41_09205 PF14525 AraC-binding-like domain OQH41_09205 PF12833 Helix-turn-helix domain OQH41_09210 PF00970 Oxidoreductase FAD-binding domain OQH41_09210 PF00175 Oxidoreductase NAD-binding domain OQH41_09210 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_09215 PF00866 Ring hydroxylating beta subunit OQH41_09220 PF00355 Rieske [2Fe-2S] domain OQH41_09220 PF00848 Ring hydroxylating alpha subunit (catalytic domain) OQH41_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09225 PF03459 TOBE domain OQH41_09235 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_09240 PF00005 ABC transporter OQH41_09240 PF03459 TOBE domain OQH41_09245 PF00106 short chain dehydrogenase OQH41_09250 PF00550 Phosphopantetheine attachment site OQH41_09250 PF00857 Isochorismatase family OQH41_09260 PF00149 Calcineurin-like phosphoesterase OQH41_09265 PF13089 Polyphosphate kinase N-terminal domain OQH41_09265 PF13090 Polyphosphate kinase C-terminal domain 2 OQH41_09265 PF02503 Polyphosphate kinase middle domain OQH41_09265 PF17941 Polyphosphate kinase C-terminal domain 1 OQH41_09270 PF08042 PqqA family OQH41_09275 PF12706 Beta-lactamase superfamily domain OQH41_09280 PF03070 TENA/THI-4/PQQC family OQH41_09285 PF05402 Coenzyme PQQ synthesis protein D (PqqD) OQH41_09290 PF13186 Iron-sulfur cluster-binding domain OQH41_09290 PF04055 Radical SAM superfamily OQH41_09295 PF01244 Membrane dipeptidase (Peptidase family M19) OQH41_09310 PF13091 PLD-like domain OQH41_09325 PF00199 Catalase OQH41_09335 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_09335 PF00107 Zinc-binding dehydrogenase OQH41_09345 PF00419 Fimbrial protein OQH41_09350 PF13953 PapC C-terminal domain OQH41_09350 PF13954 PapC N-terminal domain OQH41_09350 PF00577 Outer membrane usher protein OQH41_09355 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain OQH41_09355 PF02753 Pili assembly chaperone PapD, C-terminal domain OQH41_09360 PF16970 Type-1 fimbrial protein, A OQH41_09425 PF01266 FAD dependent oxidoreductase OQH41_09435 PF00743 Flavin-binding monooxygenase-like OQH41_09440 PF12146 Serine aminopeptidase, S33 OQH41_09445 PF02321 Outer membrane efflux protein OQH41_09450 PF00873 AcrB/AcrD/AcrF family OQH41_09455 PF00529 HlyD membrane-fusion protein of T1SS OQH41_09455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_09460 PF00072 Response regulator receiver domain OQH41_09460 PF00486 Transcriptional regulatory protein, C terminal OQH41_09465 PF00512 His Kinase A (phospho-acceptor) domain OQH41_09465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_09465 PF00672 HAMP domain OQH41_09465 PF16527 Two-component sensor protein CpxA, periplasmic domain OQH41_09480 PF02311 AraC-like ligand binding domain OQH41_09480 PF12833 Helix-turn-helix domain OQH41_09485 PF12146 Serine aminopeptidase, S33 OQH41_09500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09500 PF03466 LysR substrate binding domain OQH41_09505 PF12146 Serine aminopeptidase, S33 OQH41_09535 PF13276 HTH-like domain OQH41_09535 PF00665 Integrase core domain OQH41_09535 PF13333 Integrase core domain OQH41_09550 PF02824 TGS domain OQH41_09550 PF04607 Region found in RelA / SpoT proteins OQH41_09550 PF13291 ACT domain OQH41_09560 PF01975 Survival protein SurE OQH41_09585 PF07690 Major Facilitator Superfamily OQH41_09590 PF13533 Biotin-lipoyl like OQH41_09610 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family OQH41_09635 PF00005 ABC transporter OQH41_09640 PF01032 FecCD transport family OQH41_09655 PF00107 Zinc-binding dehydrogenase OQH41_09655 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_09660 PF06719 AraC-type transcriptional regulator N-terminus OQH41_09660 PF12833 Helix-turn-helix domain OQH41_09665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase OQH41_09665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase OQH41_09670 PF07690 Major Facilitator Superfamily OQH41_09675 PF01370 NAD dependent epimerase/dehydratase family OQH41_09705 PF00920 Dehydratase family OQH41_09710 PF00171 Aldehyde dehydrogenase family OQH41_09725 PF13533 Biotin-lipoyl like OQH41_09740 PF03466 LysR substrate binding domain OQH41_09740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09750 PF08450 SMP-30/Gluconolactonase/LRE-like region OQH41_09755 PF00392 Bacterial regulatory proteins, gntR family OQH41_09755 PF07702 UTRA domain OQH41_09765 PF04909 Amidohydrolase OQH41_09770 PF07690 Major Facilitator Superfamily OQH41_09775 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) OQH41_09825 PF07687 Peptidase dimerisation domain OQH41_09825 PF01546 Peptidase family M20/M25/M40 OQH41_09835 PF02254 TrkA-N domain OQH41_09835 PF00999 Sodium/hydrogen exchanger family OQH41_09840 PF07995 Glucose / Sorbosone dehydrogenase OQH41_09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09845 PF03466 LysR substrate binding domain OQH41_09850 PF00857 Isochorismatase family OQH41_09860 PF00440 Bacterial regulatory proteins, tetR family OQH41_09860 PF08359 YsiA-like protein, C-terminal region OQH41_09865 PF12706 Beta-lactamase superfamily domain OQH41_09875 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_09885 PF00376 MerR family regulatory protein OQH41_09885 PF09278 MerR, DNA binding OQH41_09890 PF01872 RibD C-terminal domain OQH41_09895 PF00106 short chain dehydrogenase OQH41_09900 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_09900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OQH41_09905 PF00561 alpha/beta hydrolase fold OQH41_09915 PF00171 Aldehyde dehydrogenase family OQH41_09925 PF07690 Major Facilitator Superfamily OQH41_09930 PF00920 Dehydratase family OQH41_09935 PF07729 FCD domain OQH41_09935 PF00392 Bacterial regulatory proteins, gntR family OQH41_09945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_09945 PF03466 LysR substrate binding domain OQH41_09950 PF13378 Enolase C-terminal domain-like OQH41_09950 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain OQH41_09955 PF02426 Muconolactone delta-isomerase OQH41_09965 PF01144 Coenzyme A transferase OQH41_09970 PF01144 Coenzyme A transferase OQH41_09975 PF02803 Thiolase, C-terminal domain OQH41_09975 PF00108 Thiolase, N-terminal domain OQH41_09980 PF12146 Serine aminopeptidase, S33 OQH41_09985 PF01804 Penicillin amidase OQH41_10000 PF07833 Copper amine oxidase N-terminal domain OQH41_10000 PF02727 Copper amine oxidase, N2 domain OQH41_10000 PF02728 Copper amine oxidase, N3 domain OQH41_10000 PF01179 Copper amine oxidase, enzyme domain OQH41_10005 PF02311 AraC-like ligand binding domain OQH41_10005 PF12833 Helix-turn-helix domain OQH41_10010 PF01613 Flavin reductase like domain OQH41_10015 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_10015 PF00175 Oxidoreductase NAD-binding domain OQH41_10030 PF00355 Rieske [2Fe-2S] domain OQH41_10030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) OQH41_10045 PF08028 Acyl-CoA dehydrogenase, C-terminal domain OQH41_10050 PF01425 Amidase OQH41_10060 PF07690 Major Facilitator Superfamily OQH41_10070 PF00106 short chain dehydrogenase OQH41_10085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_10085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_10085 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_10090 PF03466 LysR substrate binding domain OQH41_10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_10095 PF01614 Bacterial transcriptional regulator OQH41_10095 PF09339 IclR helix-turn-helix domain OQH41_10100 PF00753 Metallo-beta-lactamase superfamily OQH41_10110 PF04143 Sulphur transport OQH41_10120 PF01011 PQQ enzyme repeat OQH41_10120 PF13360 PQQ-like domain OQH41_10125 PF04966 Carbohydrate-selective porin, OprB family OQH41_10130 PF05048 Periplasmic copper-binding protein (NosD) OQH41_10135 PF01487 Type I 3-dehydroquinase OQH41_10140 PF00775 Dioxygenase OQH41_10145 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal OQH41_10145 PF00775 Dioxygenase OQH41_10150 PF02627 Carboxymuconolactone decarboxylase family OQH41_10155 PF07690 Major Facilitator Superfamily OQH41_10160 PF00561 alpha/beta hydrolase fold OQH41_10165 PF10397 Adenylosuccinate lyase C-terminus OQH41_10165 PF00206 Lyase OQH41_10170 PF00108 Thiolase, N-terminal domain OQH41_10170 PF02803 Thiolase, C-terminal domain OQH41_10175 PF01144 Coenzyme A transferase OQH41_10180 PF01144 Coenzyme A transferase OQH41_10185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OQH41_10190 PF04977 Septum formation initiator OQH41_10195 PF04239 Protein of unknown function (DUF421) OQH41_10200 PF03952 Enolase, N-terminal domain OQH41_10200 PF00113 Enolase, C-terminal TIM barrel domain OQH41_10205 PF00793 DAHP synthetase I family OQH41_10210 PF00117 Glutamine amidotransferase class-I OQH41_10210 PF06418 CTP synthase N-terminus OQH41_10240 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_10240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OQH41_10255 PF00793 DAHP synthetase I family OQH41_10260 PF02694 Uncharacterised BCR, YnfA/UPF0060 family OQH41_10265 PF10431 C-terminal, D2-small domain, of ClpB protein OQH41_10265 PF02861 Clp amino terminal domain, pathogenicity island component OQH41_10265 PF17871 AAA lid domain OQH41_10265 PF07724 AAA domain (Cdc48 subfamily) OQH41_10265 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_10270 PF02617 ATP-dependent Clp protease adaptor protein ClpS OQH41_10280 PF02774 Semialdehyde dehydrogenase, dimerisation domain OQH41_10280 PF01118 Semialdehyde dehydrogenase, NAD binding domain OQH41_10295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) OQH41_10300 PF00585 C-terminal regulatory domain of Threonine dehydratase OQH41_10300 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_10305 PF02080 TrkA-C domain OQH41_10305 PF02254 TrkA-N domain OQH41_10310 PF02386 Cation transport protein OQH41_10315 PF02253 Phospholipase A1 OQH41_10320 PF08367 Peptidase M16C associated OQH41_10320 PF00675 Insulinase (Peptidase family M16) OQH41_10320 PF05193 Peptidase M16 inactive domain OQH41_10325 PF00593 TonB dependent receptor OQH41_10325 PF07715 TonB-dependent Receptor Plug Domain OQH41_10330 PF00294 pfkB family carbohydrate kinase OQH41_10340 PF07290 Protein of unknown function (DUF1449) OQH41_10350 PF01654 Cytochrome bd terminal oxidase subunit I OQH41_10355 PF02322 Cytochrome bd terminal oxidase subunit II OQH41_10360 PF08173 Membrane bound YbgT-like protein OQH41_10380 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) OQH41_10390 PF02881 SRP54-type protein, helical bundle domain OQH41_10390 PF00448 SRP54-type protein, GTPase domain OQH41_10415 PF00571 CBS domain OQH41_10415 PF00478 IMP dehydrogenase / GMP reductase domain OQH41_10420 PF00202 Aminotransferase class-III OQH41_10425 PF00462 Glutaredoxin OQH41_10435 PF03466 LysR substrate binding domain OQH41_10435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_10440 PF00557 Metallopeptidase family M24 OQH41_10445 PF05525 Branched-chain amino acid transport protein OQH41_10470 PF00381 PTS HPr component phosphorylation site OQH41_10470 PF05524 PEP-utilising enzyme, N-terminal OQH41_10470 PF00391 PEP-utilising enzyme, mobile domain OQH41_10470 PF02896 PEP-utilising enzyme, TIM barrel domain OQH41_10470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 OQH41_10475 PF00294 pfkB family carbohydrate kinase OQH41_10480 PF02378 Phosphotransferase system, EIIC OQH41_10480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit OQH41_10515 PF07995 Glucose / Sorbosone dehydrogenase OQH41_10520 PF02586 SOS response associated peptidase (SRAP) OQH41_10525 PF00916 Sulfate permease family OQH41_10525 PF01740 STAS domain OQH41_10530 PF05922 Peptidase inhibitor I9 OQH41_10530 PF00082 Subtilase family OQH41_10545 PF00324 Amino acid permease OQH41_10550 PF00266 Aminotransferase class-V OQH41_10555 PF01037 Lrp/AsnC ligand binding domain OQH41_10580 PF13419 Haloacid dehalogenase-like hydrolase OQH41_10585 PF01479 S4 domain OQH41_10590 PF00154 recA bacterial DNA recombination protein OQH41_10595 PF02631 RecX family OQH41_10610 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_10610 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 OQH41_10615 PF07977 FabA-like domain OQH41_10620 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_10620 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD OQH41_10630 PF01103 Surface antigen OQH41_10630 PF07244 Surface antigen variable number repeat OQH41_10635 PF02163 Peptidase family M50 OQH41_10635 PF17820 PDZ domain OQH41_10635 PF13180 PDZ domain OQH41_10640 PF13288 DXP reductoisomerase C-terminal domain OQH41_10640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase OQH41_10640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain OQH41_10650 PF01255 Putative undecaprenyl diphosphate synthase OQH41_10655 PF01765 Ribosome recycling factor OQH41_10660 PF00696 Amino acid kinase family OQH41_10665 PF18693 TRAM domain OQH41_10665 PF04055 Radical SAM superfamily OQH41_10665 PF00919 Uncharacterized protein family UPF0004 OQH41_10670 PF00989 PAS fold OQH41_10670 PF00512 His Kinase A (phospho-acceptor) domain OQH41_10670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_10675 PF00158 Sigma-54 interaction domain OQH41_10675 PF00072 Response regulator receiver domain OQH41_10675 PF02954 Bacterial regulatory protein, Fis family OQH41_10680 PF00440 Bacterial regulatory proteins, tetR family OQH41_10685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OQH41_10685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OQH41_10695 PF02542 YgbB family OQH41_10705 PF01266 FAD dependent oxidoreductase OQH41_10725 PF10415 Fumarase C C-terminus OQH41_10725 PF00206 Lyase OQH41_10730 PF16363 GDP-mannose 4,6 dehydratase OQH41_10735 PF02635 DsrE/DsrF-like family OQH41_10755 PF00892 EamA-like transporter family OQH41_10760 PF00155 Aminotransferase class I and II OQH41_10760 PF00392 Bacterial regulatory proteins, gntR family OQH41_10765 PF01638 HxlR-like helix-turn-helix OQH41_10770 PF00994 Probable molybdopterin binding domain OQH41_10770 PF03454 MoeA C-terminal region (domain IV) OQH41_10770 PF03453 MoeA N-terminal region (domain I and II) OQH41_10775 PF01967 MoaC family OQH41_10775 PF00994 Probable molybdopterin binding domain OQH41_10780 PF02391 MoaE protein OQH41_10790 PF06463 Molybdenum Cofactor Synthesis C OQH41_10790 PF04055 Radical SAM superfamily OQH41_10795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain OQH41_10795 PF00384 Molybdopterin oxidoreductase OQH41_10795 PF01568 Molydopterin dinucleotide binding domain OQH41_10800 PF12804 MobA-like NTP transferase domain OQH41_10805 PF04324 BFD-like [2Fe-2S] binding domain OQH41_10805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain OQH41_10805 PF00384 Molybdopterin oxidoreductase OQH41_10805 PF01568 Molydopterin dinucleotide binding domain OQH41_10810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain OQH41_10810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain OQH41_10810 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_10810 PF18267 Rubredoxin NAD+ reductase C-terminal domain OQH41_10810 PF04324 BFD-like [2Fe-2S] binding domain OQH41_10815 PF18267 Rubredoxin NAD+ reductase C-terminal domain OQH41_10815 PF13806 Rieske-like [2Fe-2S] domain OQH41_10815 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain OQH41_10815 PF01077 Nitrite and sulphite reductase 4Fe-4S domain OQH41_10815 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_10815 PF04324 BFD-like [2Fe-2S] binding domain OQH41_10825 PF00072 Response regulator receiver domain OQH41_10825 PF00486 Transcriptional regulatory protein, C terminal OQH41_10830 PF00005 ABC transporter OQH41_10840 PF13438 Domain of unknown function (DUF4113) OQH41_10840 PF00817 impB/mucB/samB family OQH41_10840 PF11799 impB/mucB/samB family C-terminal domain OQH41_10845 PF01220 Dehydroquinase class II OQH41_10850 PF00364 Biotin-requiring enzyme OQH41_10855 PF02785 Biotin carboxylase C-terminal domain OQH41_10855 PF00289 Biotin carboxylase, N-terminal domain OQH41_10855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OQH41_10865 PF12832 MFS_1 like family OQH41_10885 PF01645 Conserved region in glutamate synthase OQH41_10900 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain OQH41_10900 PF01565 FAD binding domain OQH41_10905 PF01451 Low molecular weight phosphotyrosine protein phosphatase OQH41_10915 PF00465 Iron-containing alcohol dehydrogenase OQH41_10920 PF03061 Thioesterase superfamily OQH41_10925 PF05506 Domain of unknown function (DUF756) OQH41_10925 PF04185 Phosphoesterase family OQH41_10935 PF12169 DNA polymerase III subunits gamma and tau domain III OQH41_10935 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding OQH41_10935 PF12170 DNA polymerase III tau subunit V interacting with alpha OQH41_10950 PF07690 Major Facilitator Superfamily OQH41_10960 PF00144 Beta-lactamase OQH41_10965 PF01575 MaoC like domain OQH41_10975 PF00108 Thiolase, N-terminal domain OQH41_10975 PF02803 Thiolase, C-terminal domain OQH41_10990 PF00923 Transaldolase/Fructose-6-phosphate aldolase OQH41_10995 PF01810 LysE type translocator OQH41_11000 PF01037 Lrp/AsnC ligand binding domain OQH41_11005 PF03594 Benzoate membrane transport protein OQH41_11010 PF02308 MgtC family OQH41_11015 PF00689 Cation transporting ATPase, C-terminus OQH41_11015 PF00690 Cation transporter/ATPase, N-terminus OQH41_11040 PF00582 Universal stress protein family OQH41_11045 PF00005 ABC transporter OQH41_11045 PF12848 ABC transporter OQH41_11065 PF00593 TonB dependent receptor OQH41_11065 PF07715 TonB-dependent Receptor Plug Domain OQH41_11095 PF00924 Mechanosensitive ion channel OQH41_11100 PF07715 TonB-dependent Receptor Plug Domain OQH41_11100 PF00593 TonB dependent receptor OQH41_11105 PF00440 Bacterial regulatory proteins, tetR family OQH41_11115 PF13333 Integrase core domain OQH41_11115 PF00665 Integrase core domain OQH41_11115 PF13276 HTH-like domain OQH41_11125 PF01037 Lrp/AsnC ligand binding domain OQH41_11130 PF01817 Chorismate mutase type II OQH41_11140 PF00106 short chain dehydrogenase OQH41_11155 PF13954 PapC N-terminal domain OQH41_11155 PF00577 Outer membrane usher protein OQH41_11155 PF13953 PapC C-terminal domain OQH41_11170 PF01433 Peptidase family M1 domain OQH41_11170 PF17432 Domain of unknown function (DUF3458_C) ARM repeats OQH41_11170 PF11940 Domain of unknown function (DUF3458) Ig-like fold OQH41_11185 PF02110 Hydroxyethylthiazole kinase family OQH41_11195 PF14493 Helix-turn-helix domain OQH41_11195 PF05970 PIF1-like helicase OQH41_11200 PF00465 Iron-containing alcohol dehydrogenase OQH41_11215 PF00171 Aldehyde dehydrogenase family OQH41_11220 PF13520 Amino acid permease OQH41_11225 PF06751 Ethanolamine ammonia lyase large subunit (EutB) OQH41_11230 PF05985 Ethanolamine ammonia-lyase light chain (EutC) OQH41_11235 PF00958 GMP synthase C terminal domain OQH41_11235 PF02540 NAD synthase OQH41_11235 PF00117 Glutamine amidotransferase class-I OQH41_11240 PF00749 tRNA synthetases class I (E and Q), catalytic domain OQH41_11240 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain OQH41_11245 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD OQH41_11250 PF00149 Calcineurin-like phosphoesterase OQH41_11260 PF00881 Nitroreductase family OQH41_11270 PF17209 Hfq protein OQH41_11280 PF08676 MutL C terminal dimerisation domain OQH41_11280 PF01119 DNA mismatch repair protein, C-terminal domain OQH41_11285 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE OQH41_11290 PF00849 RNA pseudouridylate synthase OQH41_11290 PF01479 S4 domain OQH41_11305 PF01479 S4 domain OQH41_11305 PF00849 RNA pseudouridylate synthase OQH41_11315 PF04284 Protein of unknown function (DUF441) OQH41_11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_11320 PF03466 LysR substrate binding domain OQH41_11335 PF07690 Major Facilitator Superfamily OQH41_11340 PF00520 Ion transport protein OQH41_11340 PF00027 Cyclic nucleotide-binding domain OQH41_11350 PF00330 Aconitase family (aconitate hydratase) OQH41_11350 PF06434 Aconitate hydratase 2 N-terminus OQH41_11350 PF11791 Aconitate B N-terminal domain OQH41_11365 PF01103 Surface antigen OQH41_11365 PF07244 Surface antigen variable number repeat OQH41_11365 PF17243 POTRA domain TamA domain 1 OQH41_11370 PF07690 Major Facilitator Superfamily OQH41_11375 PF03232 Ubiquinone biosynthesis protein COQ7 OQH41_11385 PF00120 Glutamine synthetase, catalytic domain OQH41_11390 PF00072 Response regulator receiver domain OQH41_11390 PF00486 Transcriptional regulatory protein, C terminal OQH41_11395 PF13493 Domain of unknown function (DUF4118) OQH41_11395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_11395 PF00512 His Kinase A (phospho-acceptor) domain OQH41_11395 PF02702 Osmosensitive K+ channel His kinase sensor domain OQH41_11400 PF02669 K+-transporting ATPase, c chain OQH41_11410 PF03814 Potassium-transporting ATPase A subunit OQH41_11425 PF03109 ABC1 family OQH41_11430 PF00899 ThiF family OQH41_11435 PF01613 Flavin reductase like domain OQH41_11440 PF13193 AMP-binding enzyme C-terminal domain OQH41_11440 PF00501 AMP-binding enzyme OQH41_11445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_11445 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_11445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_11450 PF00106 short chain dehydrogenase OQH41_11455 PF12833 Helix-turn-helix domain OQH41_11460 PF13847 Methyltransferase domain OQH41_11460 PF17827 PrmC N-terminal domain OQH41_11465 PF03462 PCRF domain OQH41_11465 PF00472 RF-1 domain OQH41_11475 PF03466 LysR substrate binding domain OQH41_11475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_11490 PF00296 Luciferase-like monooxygenase OQH41_11500 PF13994 PgaD-like protein OQH41_11505 PF00535 Glycosyl transferase family 2 OQH41_11510 PF01522 Polysaccharide deacetylase OQH41_11510 PF14883 Hypothetical glycosyl hydrolase family 13 OQH41_11520 PF03618 Kinase/pyrophosphorylase OQH41_11525 PF00391 PEP-utilising enzyme, mobile domain OQH41_11525 PF02896 PEP-utilising enzyme, TIM barrel domain OQH41_11525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain OQH41_11535 PF06481 COX Aromatic Rich Motif OQH41_11535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain OQH41_11540 PF00115 Cytochrome C and Quinol oxidase polypeptide I OQH41_11545 PF00510 Cytochrome c oxidase subunit III OQH41_11550 PF03626 Prokaryotic Cytochrome C oxidase subunit IV OQH41_11555 PF01040 UbiA prenyltransferase family OQH41_11560 PF01250 Ribosomal protein S6 OQH41_11565 PF01084 Ribosomal protein S18 OQH41_11570 PF01281 Ribosomal protein L9, N-terminal domain OQH41_11570 PF03948 Ribosomal protein L9, C-terminal domain OQH41_11575 PF00772 DnaB-like helicase N terminal domain OQH41_11575 PF03796 DnaB-like helicase C terminal domain OQH41_11580 PF00842 Alanine racemase, C-terminal domain OQH41_11580 PF01168 Alanine racemase, N-terminal domain OQH41_11590 PF01841 Transglutaminase-like superfamily OQH41_11590 PF08379 Bacterial transglutaminase-like N-terminal region OQH41_11600 PF14403 Circularly permuted ATP-grasp type 2 OQH41_11610 PF01134 Glucose inhibited division protein A OQH41_11610 PF13932 GidA associated domain OQH41_11630 PF02954 Bacterial regulatory protein, Fis family OQH41_11635 PF01808 AICARFT/IMPCHase bienzyme OQH41_11635 PF02142 MGS-like domain OQH41_11640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain OQH41_11640 PF02843 Phosphoribosylglycinamide synthetase, C domain OQH41_11640 PF02844 Phosphoribosylglycinamide synthetase, N domain OQH41_11645 PF03180 NLPA lipoprotein OQH41_11650 PF00005 ABC transporter OQH41_11650 PF09383 NIL domain OQH41_11655 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_11660 PF16123 Hydroxyacylglutathione hydrolase C-terminus OQH41_11660 PF00753 Metallo-beta-lactamase superfamily OQH41_11670 PF00375 Sodium:dicarboxylate symporter family OQH41_11690 PF07995 Glucose / Sorbosone dehydrogenase OQH41_11700 PF01177 Asp/Glu/Hydantoin racemase OQH41_11720 PF00072 Response regulator receiver domain OQH41_11720 PF00486 Transcriptional regulatory protein, C terminal OQH41_11725 PF08521 Two-component sensor kinase N-terminal OQH41_11725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_11725 PF00512 His Kinase A (phospho-acceptor) domain OQH41_11765 PF00672 HAMP domain OQH41_11765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_11765 PF00512 His Kinase A (phospho-acceptor) domain OQH41_11770 PF00072 Response regulator receiver domain OQH41_11770 PF00486 Transcriptional regulatory protein, C terminal OQH41_11780 PF00576 HIUase/Transthyretin family OQH41_11790 PF02470 MlaD protein OQH41_11795 PF04403 Paraquat-inducible protein A OQH41_11815 PF13276 HTH-like domain OQH41_11815 PF13333 Integrase core domain OQH41_11815 PF00665 Integrase core domain OQH41_11845 PF00293 NUDIX domain OQH41_11850 PF00083 Sugar (and other) transporter OQH41_11850 PF08946 Osmosensory transporter coiled coil OQH41_11900 PF00392 Bacterial regulatory proteins, gntR family OQH41_11900 PF07729 FCD domain OQH41_11910 PF03616 Sodium/glutamate symporter OQH41_11925 PF00561 alpha/beta hydrolase fold OQH41_11950 PF04076 Bacterial OB fold (BOF) protein OQH41_11980 PF00324 Amino acid permease OQH41_11985 PF00171 Aldehyde dehydrogenase family OQH41_11990 PF00202 Aminotransferase class-III OQH41_11995 PF03466 LysR substrate binding domain OQH41_11995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_12020 PF08479 POTRA domain, ShlB-type OQH41_12020 PF17287 POTRA domain OQH41_12020 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB OQH41_12045 PF00069 Protein kinase domain OQH41_12065 PF00814 Glycoprotease family OQH41_12070 PF01165 Ribosomal protein S21 OQH41_12075 PF09424 Yqey-like protein OQH41_12080 PF01435 Peptidase family M48 OQH41_12085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OQH41_12085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain OQH41_12100 PF00156 Phosphoribosyl transferase domain OQH41_12105 PF02674 Colicin V production protein OQH41_12110 PF01180 Dihydroorotate dehydrogenase OQH41_12130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus OQH41_12130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus OQH41_12135 PF00881 Nitroreductase family OQH41_12145 PF00270 DEAD/DEAH box helicase OQH41_12145 PF00271 Helicase conserved C-terminal domain OQH41_12150 PF00313 'Cold-shock' DNA-binding domain OQH41_12165 PF00140 Sigma-70 factor, region 1.2 OQH41_12165 PF04542 Sigma-70 region 2 OQH41_12165 PF04545 Sigma-70, region 4 OQH41_12170 PF04241 Protein of unknown function (DUF423) OQH41_12180 PF05690 Thiazole biosynthesis protein ThiG OQH41_12190 PF03883 Peroxide stress protein YaaA OQH41_12200 PF00753 Metallo-beta-lactamase superfamily OQH41_12205 PF07687 Peptidase dimerisation domain OQH41_12205 PF01546 Peptidase family M20/M25/M40 OQH41_12215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) OQH41_12220 PF01842 ACT domain OQH41_12220 PF01817 Chorismate mutase type II OQH41_12220 PF00800 Prephenate dehydratase OQH41_12230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_12230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_12230 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_12235 PF00375 Sodium:dicarboxylate symporter family OQH41_12240 PF00591 Glycosyl transferase family, a/b domain OQH41_12240 PF02885 Glycosyl transferase family, helical bundle domain OQH41_12245 PF07023 Protein of unknown function (DUF1315) OQH41_12250 PF01513 ATP-NAD kinase OQH41_12255 PF00912 Transglycosylase OQH41_12255 PF00905 Penicillin binding protein transpeptidase domain OQH41_12255 PF14814 Bifunctional transglycosylase second domain OQH41_12265 PF00293 NUDIX domain OQH41_12275 PF08521 Two-component sensor kinase N-terminal OQH41_12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_12275 PF00512 His Kinase A (phospho-acceptor) domain OQH41_12280 PF00486 Transcriptional regulatory protein, C terminal OQH41_12280 PF00072 Response regulator receiver domain OQH41_12290 PF00437 Type II/IV secretion system protein OQH41_12290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain OQH41_12300 PF18389 TrmO C-terminal domain OQH41_12300 PF01980 tRNA-methyltransferase O OQH41_12305 PF00970 Oxidoreductase FAD-binding domain OQH41_12305 PF00175 Oxidoreductase NAD-binding domain OQH41_12310 PF02567 Phenazine biosynthesis-like protein OQH41_12320 PF16325 Peptidase family U32 C-terminal domain OQH41_12320 PF01136 Peptidase family U32 OQH41_12325 PF00037 4Fe-4S binding domain OQH41_12330 PF00893 Small Multidrug Resistance protein OQH41_12335 PF00005 ABC transporter OQH41_12340 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_12345 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_12350 PF00497 Bacterial extracellular solute-binding proteins, family 3 OQH41_12355 PF03466 LysR substrate binding domain OQH41_12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_12360 PF13533 Biotin-lipoyl like OQH41_12365 PF00873 AcrB/AcrD/AcrF family OQH41_12375 PF00464 Serine hydroxymethyltransferase OQH41_12405 PF00005 ABC transporter OQH41_12410 PF01061 ABC-2 type transporter OQH41_12415 PF14489 QueF-like protein OQH41_12415 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term OQH41_12425 PF01098 Cell cycle protein OQH41_12430 PF13406 Transglycosylase SLT domain OQH41_12435 PF03330 Lytic transglycolase OQH41_12435 PF05036 Sporulation related domain OQH41_12455 PF12833 Helix-turn-helix domain OQH41_12465 PF00889 Elongation factor TS OQH41_12470 PF00318 Ribosomal protein S2 OQH41_12475 PF00557 Metallopeptidase family M24 OQH41_12485 PF07690 Major Facilitator Superfamily OQH41_12495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OQH41_12495 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_12500 PF04055 Radical SAM superfamily OQH41_12505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_12505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_12505 PF09317 Domain of unknown function (DUF1974) OQH41_12520 PF05221 S-adenosyl-L-homocysteine hydrolase OQH41_12520 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain OQH41_12525 PF02219 Methylenetetrahydrofolate reductase OQH41_12530 PF04452 RNA methyltransferase OQH41_12535 PF00563 EAL domain OQH41_12535 PF00990 Diguanylate cyclase, GGDEF domain OQH41_12535 PF03707 Bacterial signalling protein N terminal repeat OQH41_12540 PF00390 Malic enzyme, N-terminal domain OQH41_12540 PF01515 Phosphate acetyl/butaryl transferase OQH41_12540 PF03949 Malic enzyme, NAD binding domain OQH41_12545 PF01743 Poly A polymerase head domain OQH41_12545 PF12627 Probable RNA and SrmB- binding site of polymerase A OQH41_12550 PF13180 PDZ domain OQH41_12555 PF01784 NIF3 (NGG1p interacting factor 3) OQH41_12560 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain OQH41_12560 PF02777 Iron/manganese superoxide dismutases, C-terminal domain OQH41_12595 PF01040 UbiA prenyltransferase family OQH41_12600 PF04345 Chorismate lyase OQH41_12605 PF00120 Glutamine synthetase, catalytic domain OQH41_12605 PF03951 Glutamine synthetase, beta-Grasp domain OQH41_12610 PF00854 POT family OQH41_12620 PF00117 Glutamine amidotransferase class-I OQH41_12625 PF11838 ERAP1-like C-terminal domain OQH41_12625 PF01433 Peptidase family M1 domain OQH41_12630 PF00593 TonB dependent receptor OQH41_12630 PF07715 TonB-dependent Receptor Plug Domain OQH41_12635 PF02885 Glycosyl transferase family, helical bundle domain OQH41_12635 PF00591 Glycosyl transferase family, a/b domain OQH41_12640 PF00218 Indole-3-glycerol phosphate synthase OQH41_12655 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase OQH41_12655 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain OQH41_12660 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_12660 PF01799 [2Fe-2S] binding domain OQH41_12665 PF01227 GTP cyclohydrolase I OQH41_12670 PF00144 Beta-lactamase OQH41_12685 PF05675 Protein of unknown function (DUF817) OQH41_12690 PF01208 Uroporphyrinogen decarboxylase (URO-D) OQH41_12700 PF00425 chorismate binding enzyme OQH41_12705 PF17837 4'-phosphopantetheinyl transferase N-terminal domain OQH41_12705 PF01648 4'-phosphopantetheinyl transferase superfamily OQH41_12710 PF00975 Thioesterase domain OQH41_12715 PF00005 ABC transporter OQH41_12720 PF00664 ABC transporter transmembrane region OQH41_12720 PF00005 ABC transporter OQH41_12730 PF00282 Pyridoxal-dependent decarboxylase conserved domain OQH41_12735 PF00857 Isochorismatase family OQH41_12735 PF00550 Phosphopantetheine attachment site OQH41_12740 PF00501 AMP-binding enzyme OQH41_12740 PF13193 AMP-binding enzyme C-terminal domain OQH41_12745 PF00550 Phosphopantetheine attachment site OQH41_12745 PF00501 AMP-binding enzyme OQH41_12745 PF00668 Condensation domain OQH41_12750 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) OQH41_12755 PF07715 TonB-dependent Receptor Plug Domain OQH41_12755 PF00593 TonB dependent receptor OQH41_12760 PF01497 Periplasmic binding protein OQH41_12765 PF00005 ABC transporter OQH41_12770 PF01032 FecCD transport family OQH41_12775 PF01032 FecCD transport family OQH41_12780 PF00550 Phosphopantetheine attachment site OQH41_12780 PF00501 AMP-binding enzyme OQH41_12780 PF00668 Condensation domain OQH41_12780 PF13193 AMP-binding enzyme C-terminal domain OQH41_12780 PF00975 Thioesterase domain OQH41_12785 PF00501 AMP-binding enzyme OQH41_12785 PF00550 Phosphopantetheine attachment site OQH41_12785 PF00668 Condensation domain OQH41_12785 PF13193 AMP-binding enzyme C-terminal domain OQH41_12795 PF13309 HTH domain OQH41_12795 PF08348 YheO-like PAS domain OQH41_12800 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_12805 PF02678 Pirin OQH41_12805 PF17954 Quercetinase C-terminal cupin domain OQH41_12820 PF13333 Integrase core domain OQH41_12820 PF13276 HTH-like domain OQH41_12820 PF00665 Integrase core domain OQH41_12855 PF04328 Selenoprotein, putative OQH41_12860 PF02554 Carbon starvation protein CstA OQH41_12860 PF13722 5TM C-terminal transporter carbon starvation CstA OQH41_12865 PF01132 Elongation factor P (EF-P) OB domain OQH41_12865 PF08207 Elongation factor P (EF-P) KOW-like domain OQH41_12865 PF09285 Elongation factor P, C-terminal OQH41_12870 PF04055 Radical SAM superfamily OQH41_12880 PF00563 EAL domain OQH41_12880 PF12792 CSS motif domain associated with EAL OQH41_12885 PF01197 Ribosomal protein L31 OQH41_12890 PF13593 SBF-like CPA transporter family (DUF4137) OQH41_12895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OQH41_12900 PF07690 Major Facilitator Superfamily OQH41_12905 PF13654 AAA domain OQH41_12905 PF05362 Lon protease (S16) C-terminal proteolytic domain OQH41_12910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_12910 PF03466 LysR substrate binding domain OQH41_12915 PF01476 LysM domain OQH41_12915 PF01551 Peptidase family M23 OQH41_12920 PF01975 Survival protein SurE OQH41_12935 PF07943 Penicillin-binding protein 5, C-terminal domain OQH41_12935 PF00768 D-alanyl-D-alanine carboxypeptidase OQH41_12940 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_12945 PF13344 Haloacid dehalogenase-like hydrolase OQH41_12945 PF00293 NUDIX domain OQH41_12955 PF04356 Protein of unknown function (DUF489) OQH41_12960 PF00206 Lyase OQH41_12960 PF08328 Adenylosuccinate lyase C-terminal OQH41_12975 PF08496 Peptidase family S49 N-terminal OQH41_12975 PF01343 Peptidase family S49 OQH41_12980 PF00005 ABC transporter OQH41_12985 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_12990 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_12995 PF12849 PBP superfamily domain OQH41_13000 PF00324 Amino acid permease OQH41_13005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OQH41_13005 PF00205 Thiamine pyrophosphate enzyme, central domain OQH41_13005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain OQH41_13010 PF01037 Lrp/AsnC ligand binding domain OQH41_13015 PF00171 Aldehyde dehydrogenase family OQH41_13020 PF00282 Pyridoxal-dependent decarboxylase conserved domain OQH41_13025 PF00202 Aminotransferase class-III OQH41_13055 PF00487 Fatty acid desaturase OQH41_13060 PF00970 Oxidoreductase FAD-binding domain OQH41_13060 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_13060 PF00175 Oxidoreductase NAD-binding domain OQH41_13065 PF00440 Bacterial regulatory proteins, tetR family OQH41_13075 PF00271 Helicase conserved C-terminal domain OQH41_13075 PF12137 RNA polymerase recycling family C-terminal OQH41_13075 PF00176 SNF2 family N-terminal domain OQH41_13075 PF18339 RapA N-terminal Tudor like domain 1 OQH41_13075 PF18337 RapA N-terminal Tudor like domain OQH41_13080 PF00849 RNA pseudouridylate synthase OQH41_13090 PF00202 Aminotransferase class-III OQH41_13095 PF02581 Thiamine monophosphate synthase OQH41_13120 PF00675 Insulinase (Peptidase family M16) OQH41_13120 PF05193 Peptidase M16 inactive domain OQH41_13125 PF02567 Phenazine biosynthesis-like protein OQH41_13130 PF00375 Sodium:dicarboxylate symporter family OQH41_13135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_13135 PF03466 LysR substrate binding domain OQH41_13140 PF06779 Uncharacterised MFS-type transporter YbfB OQH41_13160 PF00180 Isocitrate/isopropylmalate dehydrogenase OQH41_13165 PF00849 RNA pseudouridylate synthase OQH41_13170 PF03971 Monomeric isocitrate dehydrogenase OQH41_13180 PF07943 Penicillin-binding protein 5, C-terminal domain OQH41_13180 PF00768 D-alanyl-D-alanine carboxypeptidase OQH41_13185 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_13190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase OQH41_13195 PF03441 FAD binding domain of DNA photolyase OQH41_13195 PF00875 DNA photolyase OQH41_13225 PF02350 UDP-N-acetylglucosamine 2-epimerase OQH41_13240 PF03060 Nitronate monooxygenase OQH41_13245 PF01207 Dihydrouridine synthase (Dus) OQH41_13250 PF07759 Protein of unknown function (DUF1615) OQH41_13260 PF00696 Amino acid kinase family OQH41_13260 PF01472 PUA domain OQH41_13265 PF01018 GTP1/OBG OQH41_13265 PF01926 50S ribosome-binding GTPase OQH41_13280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain OQH41_13280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain OQH41_13285 PF00892 EamA-like transporter family OQH41_13295 PF00271 Helicase conserved C-terminal domain OQH41_13295 PF04851 Type III restriction enzyme, res subunit OQH41_13295 PF02151 UvrB/uvrC motif OQH41_13295 PF12344 Ultra-violet resistance protein B OQH41_13295 PF17757 UvrB interaction domain OQH41_13305 PF00990 Diguanylate cyclase, GGDEF domain OQH41_13305 PF17151 Periplasmic sensor domain OQH41_13315 PF00155 Aminotransferase class I and II OQH41_13345 PF00106 short chain dehydrogenase OQH41_13350 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) OQH41_13355 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ OQH41_13360 PF02565 Recombination protein O C terminal OQH41_13360 PF11967 Recombination protein O N terminal OQH41_13370 PF07650 KH domain OQH41_13370 PF01926 50S ribosome-binding GTPase OQH41_13375 PF00035 Double-stranded RNA binding motif OQH41_13375 PF14622 Ribonuclease-III-like OQH41_13385 PF10502 Signal peptidase, peptidase S26 OQH41_13390 PF00679 Elongation factor G C-terminus OQH41_13390 PF00009 Elongation factor Tu GTP binding domain OQH41_13390 PF03144 Elongation factor Tu domain 2 OQH41_13390 PF06421 GTP-binding protein LepA C-terminus OQH41_13400 PF13180 PDZ domain OQH41_13405 PF00890 FAD binding domain OQH41_13405 PF02910 Fumarate reductase flavoprotein C-term OQH41_13415 PF02223 Thymidylate kinase OQH41_13420 PF02618 YceG-like family OQH41_13425 PF01063 Amino-transferase class IV OQH41_13440 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_13445 PF00528 Binding-protein-dependent transport system inner membrane component OQH41_13450 PF12857 TOBE-like domain OQH41_13450 PF00005 ABC transporter OQH41_13455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_13455 PF03466 LysR substrate binding domain OQH41_13465 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_13465 PF14602 Hexapeptide repeat of succinyl-transferase OQH41_13465 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal OQH41_13475 PF06508 Queuosine biosynthesis protein QueC OQH41_13490 PF00578 AhpC/TSA family OQH41_13500 PF01467 Cytidylyltransferase-like OQH41_13500 PF00293 NUDIX domain OQH41_13505 PF00378 Enoyl-CoA hydratase/isomerase OQH41_13510 PF01784 NIF3 (NGG1p interacting factor 3) OQH41_13520 PF07690 Major Facilitator Superfamily OQH41_13525 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal OQH41_13525 PF02769 AIR synthase related protein, C-terminal domain OQH41_13525 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain OQH41_13530 PF01966 HD domain OQH41_13535 PF07499 RuvA, C-terminal domain OQH41_13535 PF01330 RuvA N terminal domain OQH41_13540 PF05496 Holliday junction DNA helicase RuvB P-loop domain OQH41_13540 PF17864 RuvB AAA lid domain OQH41_13540 PF05491 RuvB C-terminal winged helix domain OQH41_13550 PF03061 Thioesterase superfamily OQH41_13555 PF01618 MotA/TolQ/ExbB proton channel family OQH41_13560 PF02472 Biopolymer transport protein ExbD/TolR OQH41_13570 PF07676 WD40-like Beta Propeller Repeat OQH41_13570 PF04052 TolB amino-terminal domain OQH41_13575 PF00691 OmpA family OQH41_13585 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain OQH41_13590 PF00588 SpoU rRNA Methylase family OQH41_13590 PF08032 RNA 2'-O ribose methyltransferase substrate binding OQH41_13620 PF00308 Bacterial dnaA protein OQH41_13620 PF08299 Bacterial dnaA protein helix-turn-helix OQH41_13620 PF11638 DnaA N-terminal domain OQH41_13625 PF01594 AI-2E family transporter OQH41_13630 PF00586 AIR synthase related protein, N-terminal domain OQH41_13630 PF02769 AIR synthase related protein, C-terminal domain OQH41_13635 PF00551 Formyl transferase OQH41_13640 PF12697 Alpha/beta hydrolase family OQH41_13645 PF06965 Na+/H+ antiporter 1 OQH41_13645 PF01343 Peptidase family S49 OQH41_13655 PF03772 Competence protein OQH41_13655 PF13567 Domain of unknown function (DUF4131) OQH41_13655 PF00753 Metallo-beta-lactamase superfamily OQH41_13660 PF00005 ABC transporter OQH41_13665 PF02687 FtsX-like permease family OQH41_13665 PF12704 MacB-like periplasmic core domain OQH41_13675 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 OQH41_13690 PF00266 Aminotransferase class-V OQH41_13700 PF13533 Biotin-lipoyl like OQH41_13720 PF00535 Glycosyl transferase family 2 OQH41_13745 PF03989 DNA gyrase C-terminal domain, beta-propeller OQH41_13745 PF00521 DNA gyrase/topoisomerase IV, subunit A OQH41_13750 PF01012 Electron transfer flavoprotein domain OQH41_13750 PF00766 Electron transfer flavoprotein FAD-binding domain OQH41_13755 PF01012 Electron transfer flavoprotein domain OQH41_13760 PF02899 Phage integrase, N-terminal SAM-like domain OQH41_13760 PF00589 Phage integrase family OQH41_13765 PF01810 LysE type translocator OQH41_13770 PF00561 alpha/beta hydrolase fold OQH41_13775 PF01678 Diaminopimelate epimerase OQH41_13780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain OQH41_13780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain OQH41_13790 PF00324 Amino acid permease OQH41_13795 PF18073 Rubredoxin metal binding domain OQH41_13805 PF00152 tRNA synthetases class II (D, K and N) OQH41_13810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OQH41_13810 PF11890 Domain of unknown function (DUF3410) OQH41_13810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain OQH41_13815 PF06803 Protein of unknown function (DUF1232) OQH41_13820 PF02634 FdhD/NarQ family OQH41_13825 PF00384 Molybdopterin oxidoreductase OQH41_13830 PF02595 Glycerate kinase family OQH41_13845 PF00881 Nitroreductase family OQH41_13860 PF13276 HTH-like domain OQH41_13860 PF13333 Integrase core domain OQH41_13860 PF00665 Integrase core domain OQH41_13890 PF09857 Putative toxin of bacterial toxin-antitoxin pair OQH41_13900 PF00975 Thioesterase domain OQH41_13900 PF00550 Phosphopantetheine attachment site OQH41_13900 PF00668 Condensation domain OQH41_13900 PF13193 AMP-binding enzyme C-terminal domain OQH41_13900 PF00501 AMP-binding enzyme OQH41_13915 PF03449 Transcription elongation factor, N-terminal OQH41_13915 PF01272 Transcription elongation factor, GreA/GreB, C-term OQH41_13920 PF00497 Bacterial extracellular solute-binding proteins, family 3 OQH41_13920 PF01464 Transglycosylase SLT domain OQH41_13930 PF01171 PP-loop family OQH41_13935 PF01464 Transglycosylase SLT domain OQH41_13940 PF01435 Peptidase family M48 OQH41_13950 PF00873 AcrB/AcrD/AcrF family OQH41_13955 PF03009 Glycerophosphoryl diester phosphodiesterase family OQH41_13960 PF00753 Metallo-beta-lactamase superfamily OQH41_13965 PF01219 Prokaryotic diacylglycerol kinase OQH41_13970 PF00118 TCP-1/cpn60 chaperonin family OQH41_13975 PF00166 Chaperonin 10 Kd subunit OQH41_13980 PF00149 Calcineurin-like phosphoesterase OQH41_13985 PF00781 Diacylglycerol kinase catalytic domain OQH41_13990 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain OQH41_13990 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain OQH41_13995 PF01266 FAD dependent oxidoreductase OQH41_13995 PF16901 C-terminal domain of alpha-glycerophosphate oxidase OQH41_14000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain OQH41_14000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain OQH41_14005 PF00083 Sugar (and other) transporter OQH41_14020 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OQH41_14020 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OQH41_14035 PF09423 PhoD-like phosphatase OQH41_14035 PF16655 PhoD-like phosphatase, N-terminal domain OQH41_14055 PF00809 Pterin binding enzyme OQH41_14060 PF06480 FtsH Extracellular OQH41_14060 PF01434 Peptidase family M41 OQH41_14060 PF17862 AAA+ lid domain OQH41_14060 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_14065 PF01728 FtsJ-like methyltransferase OQH41_14070 PF01985 CRS1 / YhbY (CRM) domain OQH41_14085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain OQH41_14085 PF00117 Glutamine amidotransferase class-I OQH41_14090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OQH41_14090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain OQH41_14090 PF02142 MGS-like domain OQH41_14095 PF01272 Transcription elongation factor, GreA/GreB, C-term OQH41_14095 PF03449 Transcription elongation factor, N-terminal OQH41_14100 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_14105 PF00582 Universal stress protein family OQH41_14110 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain OQH41_14150 PF00999 Sodium/hydrogen exchanger family OQH41_14155 PF04228 Putative neutral zinc metallopeptidase OQH41_14160 PF05661 Protein of unknown function (DUF808) OQH41_14165 PF00579 tRNA synthetases class I (W and Y) OQH41_14170 PF02629 CoA binding domain OQH41_14170 PF00549 CoA-ligase OQH41_14175 PF00549 CoA-ligase OQH41_14175 PF08442 ATP-grasp domain OQH41_14180 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_14180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OQH41_14185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OQH41_14185 PF00364 Biotin-requiring enzyme OQH41_14185 PF02817 e3 binding domain OQH41_14190 PF16078 2-oxoglutarate dehydrogenase N-terminus OQH41_14190 PF16870 2-oxoglutarate dehydrogenase C-terminal OQH41_14190 PF02779 Transketolase, pyrimidine binding domain OQH41_14190 PF00676 Dehydrogenase E1 component OQH41_14205 PF13085 2Fe-2S iron-sulfur cluster binding domain OQH41_14210 PF00890 FAD binding domain OQH41_14210 PF02910 Fumarate reductase flavoprotein C-term OQH41_14215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit OQH41_14220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit OQH41_14225 PF00285 Citrate synthase, C-terminal domain OQH41_14235 PF00581 Rhodanese-like domain OQH41_14235 PF17773 UPF0176 acylphosphatase like domain OQH41_14250 PF04545 Sigma-70, region 4 OQH41_14250 PF04542 Sigma-70 region 2 OQH41_14250 PF04539 Sigma-70 region 3 OQH41_14250 PF00140 Sigma-70 factor, region 1.2 OQH41_14250 PF03979 Sigma-70 factor, region 1.1 OQH41_14250 PF04546 Sigma-70, non-essential region OQH41_14255 PF04359 Protein of unknown function (DUF493) OQH41_14260 PF03099 Biotin/lipoate A/B protein ligase family OQH41_14270 PF00465 Iron-containing alcohol dehydrogenase OQH41_14275 PF13817 IS66 C-terminal element OQH41_14275 PF13005 zinc-finger binding domain of transposase IS66 OQH41_14275 PF13007 Transposase C of IS166 homeodomain OQH41_14275 PF03050 Transposase IS66 family OQH41_14290 PF13520 Amino acid permease OQH41_14295 PF03358 NADPH-dependent FMN reductase OQH41_14300 PF01638 HxlR-like helix-turn-helix OQH41_14305 PF00588 SpoU rRNA Methylase family OQH41_14310 PF14824 Sirohaem biosynthesis protein central OQH41_14310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases OQH41_14310 PF10414 Sirohaem synthase dimerisation region OQH41_14315 PF02403 Seryl-tRNA synthetase N-terminal domain OQH41_14315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) OQH41_14325 PF03548 Outer membrane lipoprotein carrier protein LolA OQH41_14330 PF01016 Ribosomal L27 protein OQH41_14335 PF00829 Ribosomal prokaryotic L21 protein OQH41_14345 PF00348 Polyprenyl synthetase OQH41_14355 PF01569 PAP2 superfamily OQH41_14360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_14360 PF00529 HlyD membrane-fusion protein of T1SS OQH41_14365 PF00873 AcrB/AcrD/AcrF family OQH41_14370 PF02321 Outer membrane efflux protein OQH41_14375 PF01906 Putative heavy-metal-binding OQH41_14400 PF00133 tRNA synthetases class I (I, L, M and V) OQH41_14400 PF10458 Valyl tRNA synthetase tRNA binding arm OQH41_14400 PF08264 Anticodon-binding domain of tRNA OQH41_14405 PF01119 DNA mismatch repair protein, C-terminal domain OQH41_14405 PF08676 MutL C terminal dimerisation domain OQH41_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_14420 PF03466 LysR substrate binding domain OQH41_14425 PF00909 Ammonium Transporter Family OQH41_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_14435 PF00512 His Kinase A (phospho-acceptor) domain OQH41_14435 PF08521 Two-component sensor kinase N-terminal OQH41_14440 PF00072 Response regulator receiver domain OQH41_14440 PF00486 Transcriptional regulatory protein, C terminal OQH41_14445 PF08019 Phosphoethanolamine transferase EptA/EptB OQH41_14445 PF00884 Sulfatase OQH41_14465 PF01734 Patatin-like phospholipase OQH41_14475 PF01145 SPFH domain / Band 7 family OQH41_14480 PF04237 YjbR OQH41_14485 PF00348 Polyprenyl synthetase OQH41_14490 PF04303 PrpF protein OQH41_14495 PF00324 Amino acid permease OQH41_14505 PF01965 DJ-1/PfpI family OQH41_14510 PF00550 Phosphopantetheine attachment site OQH41_14510 PF08659 KR domain OQH41_14510 PF02801 Beta-ketoacyl synthase, C-terminal domain OQH41_14510 PF00109 Beta-ketoacyl synthase, N-terminal domain OQH41_14510 PF16197 Ketoacyl-synthetase C-terminal extension OQH41_14510 PF14765 Polyketide synthase dehydratase OQH41_14510 PF08990 Erythronolide synthase docking OQH41_14510 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_14510 PF00698 Acyl transferase domain OQH41_14510 PF09277 Erythronolide synthase, docking OQH41_14515 PF06719 AraC-type transcriptional regulator N-terminus OQH41_14515 PF12833 Helix-turn-helix domain OQH41_14520 PF02673 Bacitracin resistance protein BacA OQH41_14540 PF02525 Flavodoxin-like fold OQH41_14555 PF01507 Phosphoadenosine phosphosulfate reductase family OQH41_14560 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain OQH41_14560 PF06974 Protein of unknown function (DUF1298) OQH41_14570 PF10150 Ribonuclease E/G family OQH41_14570 PF00575 S1 RNA binding domain OQH41_14575 PF02545 Maf-like protein OQH41_14580 PF04093 rod shape-determining protein MreD OQH41_14585 PF04085 rod shape-determining protein MreC OQH41_14595 PF02686 Glu-tRNAGln amidotransferase C subunit OQH41_14600 PF01425 Amidase OQH41_14605 PF02934 GatB/GatE catalytic domain OQH41_14605 PF02637 GatB domain OQH41_14630 PF01431 Peptidase family M13 OQH41_14630 PF05649 Peptidase family M13 OQH41_14635 PF05992 SbmA/BacA-like family OQH41_14640 PF13291 ACT domain OQH41_14640 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_14645 PF01734 Patatin-like phospholipase OQH41_14650 PF01235 Sodium:alanine symporter family OQH41_14665 PF00881 Nitroreductase family OQH41_14670 PF07690 Major Facilitator Superfamily OQH41_14675 PF12805 FUSC-like inner membrane protein yccS OQH41_14685 PF00667 FAD binding domain OQH41_14685 PF00258 Flavodoxin OQH41_14685 PF00175 Oxidoreductase NAD-binding domain OQH41_14725 PF03734 L,D-transpeptidase catalytic domain OQH41_14725 PF17969 L,D-transpeptidase C-terminal domain OQH41_14730 PF04304 Protein of unknown function (DUF454) OQH41_14740 PF08085 Entericidin EcnA/B family OQH41_14745 PF01546 Peptidase family M20/M25/M40 OQH41_14745 PF07687 Peptidase dimerisation domain OQH41_14760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_14760 PF01584 CheW-like domain OQH41_14760 PF00072 Response regulator receiver domain OQH41_14760 PF01627 Hpt domain OQH41_14765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain OQH41_14765 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term OQH41_14770 PF01584 CheW-like domain OQH41_14775 PF00072 Response regulator receiver domain OQH41_14780 PF00072 Response regulator receiver domain OQH41_14795 PF00873 AcrB/AcrD/AcrF family OQH41_14800 PF03129 Anticodon binding domain OQH41_14800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) OQH41_14800 PF04073 Aminoacyl-tRNA editing domain OQH41_14805 PF07411 Domain of unknown function (DUF1508) OQH41_14810 PF03831 PhnA domain OQH41_14810 PF08274 PhnA Zinc-Ribbon OQH41_14815 PF04343 Protein of unknown function, DUF488 OQH41_14825 PF01571 Aminomethyltransferase folate-binding domain OQH41_14830 PF13098 Thioredoxin-like domain OQH41_14830 PF10411 Disulfide bond isomerase protein N-terminus OQH41_14840 PF03547 Membrane transport protein OQH41_14845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OQH41_14850 PF07715 TonB-dependent Receptor Plug Domain OQH41_14850 PF00593 TonB dependent receptor OQH41_14855 PF02245 Methylpurine-DNA glycosylase (MPG) OQH41_14860 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain OQH41_14860 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain OQH41_14860 PF06827 Zinc finger found in FPG and IleRS OQH41_14875 PF01741 Large-conductance mechanosensitive channel, MscL OQH41_14880 PF00679 Elongation factor G C-terminus OQH41_14880 PF00009 Elongation factor Tu GTP binding domain OQH41_14880 PF03144 Elongation factor Tu domain 2 OQH41_14885 PF00860 Permease family OQH41_14890 PF05175 Methyltransferase small domain OQH41_14890 PF08468 Methyltransferase small domain N-terminal OQH41_14895 PF00324 Amino acid permease OQH41_14900 PF01139 tRNA-splicing ligase RtcB OQH41_14910 PF00691 OmpA family OQH41_14910 PF13505 Outer membrane protein beta-barrel domain OQH41_14920 PF02803 Thiolase, C-terminal domain OQH41_14920 PF00108 Thiolase, N-terminal domain OQH41_14930 PF00893 Small Multidrug Resistance protein OQH41_14940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain OQH41_14940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain OQH41_14945 PF01011 PQQ enzyme repeat OQH41_14950 PF04966 Carbohydrate-selective porin, OprB family OQH41_14955 PF02515 CoA-transferase family III OQH41_14960 PF02311 AraC-like ligand binding domain OQH41_14960 PF12833 Helix-turn-helix domain OQH41_14965 PF02803 Thiolase, C-terminal domain OQH41_14965 PF00108 Thiolase, N-terminal domain OQH41_14970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OQH41_14970 PF00378 Enoyl-CoA hydratase/isomerase OQH41_14970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OQH41_14995 PF03006 Haemolysin-III related OQH41_15000 PF07690 Major Facilitator Superfamily OQH41_15000 PF00083 Sugar (and other) transporter OQH41_15010 PF02810 SEC-C motif OQH41_15010 PF07517 SecA DEAD-like domain OQH41_15010 PF01043 SecA preprotein cross-linking domain OQH41_15010 PF07516 SecA Wing and Scaffold domain OQH41_15015 PF00578 AhpC/TSA family OQH41_15015 PF10417 C-terminal domain of 1-Cys peroxiredoxin OQH41_15020 PF00753 Metallo-beta-lactamase superfamily OQH41_15035 PF08245 Mur ligase middle domain OQH41_15035 PF02875 Mur ligase family, glutamate ligase domain OQH41_15040 PF01039 Carboxyl transferase domain OQH41_15045 PF00290 Tryptophan synthase alpha chain OQH41_15070 PF00291 Pyridoxal-phosphate dependent enzyme OQH41_15075 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase OQH41_15080 PF00593 TonB dependent receptor OQH41_15080 PF07715 TonB-dependent Receptor Plug Domain OQH41_15085 PF01923 Cobalamin adenosyltransferase OQH41_15105 PF02696 Uncharacterized ACR, YdiU/UPF0061 family OQH41_15110 PF00072 Response regulator receiver domain OQH41_15110 PF00486 Transcriptional regulatory protein, C terminal OQH41_15115 PF00672 HAMP domain OQH41_15115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_15115 PF00512 His Kinase A (phospho-acceptor) domain OQH41_15125 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_15125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_15125 PF12806 Acetyl-CoA dehydrogenase C-terminal like OQH41_15125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_15130 PF12806 Acetyl-CoA dehydrogenase C-terminal like OQH41_15130 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_15130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_15130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_15135 PF06146 Phosphate-starvation-inducible E OQH41_15155 PF07715 TonB-dependent Receptor Plug Domain OQH41_15155 PF00593 TonB dependent receptor OQH41_15165 PF02938 GAD domain OQH41_15165 PF00152 tRNA synthetases class II (D, K and N) OQH41_15165 PF01336 OB-fold nucleic acid binding domain OQH41_15180 PF00535 Glycosyl transferase family 2 OQH41_15185 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase OQH41_15190 PF00483 Nucleotidyl transferase OQH41_15195 PF04321 RmlD substrate binding domain OQH41_15200 PF16363 GDP-mannose 4,6 dehydratase OQH41_15210 PF00534 Glycosyl transferases group 1 OQH41_15210 PF13439 Glycosyltransferase Family 4 OQH41_15215 PF01522 Polysaccharide deacetylase OQH41_15225 PF01063 Amino-transferase class IV OQH41_15230 PF08335 GlnD PII-uridylyltransferase OQH41_15230 PF03710 Glutamate-ammonia ligase adenylyltransferase OQH41_15235 PF07689 KaiB domain OQH41_15235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_15235 PF00512 His Kinase A (phospho-acceptor) domain OQH41_15245 PF02547 Queuosine biosynthesis protein OQH41_15260 PF01702 Queuine tRNA-ribosyltransferase OQH41_15265 PF02699 Preprotein translocase subunit OQH41_15270 PF07549 SecD/SecF GG Motif OQH41_15270 PF13721 SecD export protein N-terminal TM region OQH41_15270 PF02355 Protein export membrane protein OQH41_15275 PF07549 SecD/SecF GG Motif OQH41_15275 PF02355 Protein export membrane protein OQH41_15285 PF02441 Flavoprotein OQH41_15285 PF04127 DNA / pantothenate metabolism flavoprotein OQH41_15290 PF04002 RadC-like JAB domain OQH41_15295 PF01062 Bestrophin, RFP-TM, chloride channel OQH41_15300 PF02811 PHP domain OQH41_15305 PF04279 Intracellular septation protein A OQH41_15310 PF03795 YCII-related domain OQH41_15320 PF01266 FAD dependent oxidoreductase OQH41_15320 PF05430 S-adenosyl-L-methionine-dependent methyltransferase OQH41_15330 PF04461 Protein of unknown function (DUF520) OQH41_15340 PF03061 Thioesterase superfamily OQH41_15345 PF00085 Thioredoxin OQH41_15350 PF00561 alpha/beta hydrolase fold OQH41_15355 PF04273 Putative phosphatase (DUF442) OQH41_15355 PF00753 Metallo-beta-lactamase superfamily OQH41_15365 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_15365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain OQH41_15400 PF17152 Periplasmic sensor domain OQH41_15400 PF00990 Diguanylate cyclase, GGDEF domain OQH41_15405 PF00691 OmpA family OQH41_15405 PF01389 OmpA-like transmembrane domain OQH41_15410 PF00149 Calcineurin-like phosphoesterase OQH41_15410 PF10518 TAT (twin-arginine translocation) pathway signal sequence OQH41_15415 PF13091 PLD-like domain OQH41_15425 PF01926 50S ribosome-binding GTPase OQH41_15425 PF16360 GTP-binding GTPase Middle Region OQH41_15425 PF13167 GTP-binding GTPase N-terminal OQH41_15445 PF00149 Calcineurin-like phosphoesterase OQH41_15450 PF00398 Ribosomal RNA adenine dimethylase OQH41_15455 PF04166 Pyridoxal phosphate biosynthetic protein PdxA OQH41_15460 PF00572 Ribosomal protein L13 OQH41_15465 PF00380 Ribosomal protein S9/S16 OQH41_15470 PF00043 Glutathione S-transferase, C-terminal domain OQH41_15470 PF13417 Glutathione S-transferase, N-terminal domain OQH41_15475 PF04386 Stringent starvation protein B OQH41_15485 PF00364 Biotin-requiring enzyme OQH41_15485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain OQH41_15485 PF02785 Biotin carboxylase C-terminal domain OQH41_15485 PF00289 Biotin carboxylase, N-terminal domain OQH41_15495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_15495 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_15495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_15500 PF01039 Carboxyl transferase domain OQH41_15515 PF00440 Bacterial regulatory proteins, tetR family OQH41_15515 PF17932 Tetracyclin repressor-like, C-terminal domain OQH41_15520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_15520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_15520 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_15565 PF01066 CDP-alcohol phosphatidyltransferase OQH41_15570 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ OQH41_15590 PF00056 lactate/malate dehydrogenase, NAD binding domain OQH41_15590 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain OQH41_15600 PF01551 Peptidase family M23 OQH41_15600 PF10145 Phage-related minor tail protein OQH41_15600 PF01464 Transglycosylase SLT domain OQH41_15605 PF04055 Radical SAM superfamily OQH41_15605 PF01938 TRAM domain OQH41_15605 PF00919 Uncharacterized protein family UPF0004 OQH41_15610 PF02562 PhoH-like protein OQH41_15615 PF02130 Uncharacterized protein family UPF0054 OQH41_15640 PF03358 NADPH-dependent FMN reductase OQH41_15645 PF03631 Virulence factor BrkB OQH41_15650 PF00892 EamA-like transporter family OQH41_15655 PF12833 Helix-turn-helix domain OQH41_15660 PF01557 Fumarylacetoacetate (FAA) hydrolase family OQH41_15705 PF17876 Cold shock domain OQH41_15705 PF08461 Ribonuclease R winged-helix domain OQH41_15705 PF08206 Ribonuclease B OB domain OQH41_15705 PF00773 RNB domain OQH41_15705 PF00575 S1 RNA binding domain OQH41_15710 PF01432 Peptidase family M3 OQH41_15715 PF09526 Probable metal-binding protein (DUF2387) OQH41_15745 PF03937 Flavinator of succinate dehydrogenase OQH41_15750 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_15750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_15750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_15755 PF00743 Flavin-binding monooxygenase-like OQH41_15760 PF01196 Ribosomal protein L17 OQH41_15765 PF01000 RNA polymerase Rpb3/RpoA insert domain OQH41_15765 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain OQH41_15765 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain OQH41_15770 PF00163 Ribosomal protein S4/S9 N-terminal domain OQH41_15770 PF01479 S4 domain OQH41_15775 PF00411 Ribosomal protein S11 OQH41_15780 PF00416 Ribosomal protein S13/S18 OQH41_15785 PF00444 Ribosomal protein L36 OQH41_15790 PF00344 SecY translocase OQH41_15795 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A OQH41_15800 PF00327 Ribosomal protein L30p/L7e OQH41_15805 PF00333 Ribosomal protein S5, N-terminal domain OQH41_15805 PF03719 Ribosomal protein S5, C-terminal domain OQH41_15810 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast OQH41_15815 PF00347 Ribosomal protein L6 OQH41_15820 PF00410 Ribosomal protein S8 OQH41_15825 PF00253 Ribosomal protein S14p/S29e OQH41_15830 PF00281 Ribosomal protein L5 OQH41_15830 PF00673 ribosomal L5P family C-terminus OQH41_15835 PF00467 KOW motif OQH41_15835 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 OQH41_15840 PF00238 Ribosomal protein L14p/L23e OQH41_15845 PF00366 Ribosomal protein S17 OQH41_15850 PF00831 Ribosomal L29 protein OQH41_15855 PF00252 Ribosomal protein L16p/L10e OQH41_15865 PF00237 Ribosomal protein L22p/L17e OQH41_15870 PF00203 Ribosomal protein S19 OQH41_15875 PF00181 Ribosomal Proteins L2, RNA binding domain OQH41_15875 PF03947 Ribosomal Proteins L2, C-terminal domain OQH41_15880 PF00276 Ribosomal protein L23 OQH41_15885 PF00573 Ribosomal protein L4/L1 family OQH41_15890 PF00297 Ribosomal protein L3 OQH41_15895 PF00338 Ribosomal protein S10p/S20e OQH41_15900 PF00117 Glutamine amidotransferase class-I OQH41_15905 PF01053 Cys/Met metabolism PLP-dependent enzyme OQH41_15910 PF05872 Bacterial protein of unknown function (DUF853) OQH41_15920 PF00970 Oxidoreductase FAD-binding domain OQH41_15920 PF00042 Globin OQH41_15920 PF00175 Oxidoreductase NAD-binding domain OQH41_15925 PF02082 Transcriptional regulator OQH41_15930 PF01926 50S ribosome-binding GTPase OQH41_15940 PF00375 Sodium:dicarboxylate symporter family OQH41_15950 PF01553 Acyltransferase OQH41_15965 PF00270 DEAD/DEAH box helicase OQH41_15965 PF00271 Helicase conserved C-terminal domain OQH41_15965 PF17191 RecG wedge domain OQH41_15970 PF00156 Phosphoribosyl transferase domain OQH41_15975 PF00293 NUDIX domain OQH41_15980 PF03641 Possible lysine decarboxylase OQH41_15985 PF01544 CorA-like Mg2+ transporter protein OQH41_15995 PF05494 MlaC protein OQH41_16005 PF02405 Permease MlaE OQH41_16010 PF00005 ABC transporter OQH41_16020 PF00271 Helicase conserved C-terminal domain OQH41_16020 PF03880 DbpA RNA binding domain OQH41_16020 PF00270 DEAD/DEAH box helicase OQH41_16020 PF12343 Cold shock protein DEAD box A OQH41_16025 PF00459 Inositol monophosphatase family OQH41_16030 PF13292 1-deoxy-D-xylulose-5-phosphate synthase OQH41_16030 PF02779 Transketolase, pyrimidine binding domain OQH41_16030 PF02780 Transketolase, C-terminal domain OQH41_16035 PF00925 GTP cyclohydrolase II OQH41_16040 PF01218 Coproporphyrinogen III oxidase OQH41_16045 PF18317 Shikimate 5'-dehydrogenase C-terminal domain OQH41_16045 PF01488 Shikimate / quinate 5-dehydrogenase OQH41_16045 PF08501 Shikimate dehydrogenase substrate binding domain OQH41_16055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain OQH41_16055 PF02770 Acyl-CoA dehydrogenase, middle domain OQH41_16055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain OQH41_16055 PF12806 Acetyl-CoA dehydrogenase C-terminal like OQH41_16065 PF04024 PspC domain OQH41_16070 PF00571 CBS domain OQH41_16095 PF02091 Glycyl-tRNA synthetase alpha subunit OQH41_16100 PF05746 DALR anticodon binding domain OQH41_16100 PF02092 Glycyl-tRNA synthetase beta subunit OQH41_16105 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system OQH41_16125 PF00892 EamA-like transporter family OQH41_16130 PF03466 LysR substrate binding domain OQH41_16130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_16160 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family OQH41_16165 PF04996 Succinylarginine dihydrolase OQH41_16170 PF00171 Aldehyde dehydrogenase family OQH41_16175 PF04958 Arginine N-succinyltransferase beta subunit OQH41_16180 PF00202 Aminotransferase class-III OQH41_16185 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain OQH41_16185 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase OQH41_16190 PF00324 Amino acid permease OQH41_16200 PF08241 Methyltransferase domain OQH41_16220 PF13614 AAA domain OQH41_16225 PF01594 AI-2E family transporter OQH41_16230 PF00080 Copper/zinc superoxide dismutase (SODC) OQH41_16235 PF12805 FUSC-like inner membrane protein yccS OQH41_16240 PF07690 Major Facilitator Superfamily OQH41_16250 PF02525 Flavodoxin-like fold OQH41_16255 PF03992 Antibiotic biosynthesis monooxygenase OQH41_16265 PF02913 FAD linked oxidases, C-terminal domain OQH41_16265 PF01565 FAD binding domain OQH41_16270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain OQH41_16270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain OQH41_16275 PF00892 EamA-like transporter family OQH41_16280 PF00892 EamA-like transporter family OQH41_16290 PF01925 Sulfite exporter TauE/SafE OQH41_16295 PF09157 Pseudouridine synthase II TruB, C-terminal OQH41_16295 PF16198 tRNA pseudouridylate synthase B C-terminal domain OQH41_16295 PF01509 TruB family pseudouridylate synthase (N terminal domain) OQH41_16300 PF03280 Proteobacterial lipase chaperone protein OQH41_16305 PF00561 alpha/beta hydrolase fold OQH41_16310 PF01245 Ribosomal protein L19 OQH41_16315 PF01746 tRNA (Guanine-1)-methyltransferase OQH41_16320 PF05239 PRC-barrel domain OQH41_16320 PF01782 RimM N-terminal domain OQH41_16325 PF00886 Ribosomal protein S16 OQH41_16365 PF02401 LytB protein OQH41_16370 PF00625 Guanylate kinase OQH41_16375 PF01192 RNA polymerase Rpb6 OQH41_16385 PF04607 Region found in RelA / SpoT proteins OQH41_16385 PF02824 TGS domain OQH41_16385 PF13291 ACT domain OQH41_16390 PF01042 Endoribonuclease L-PSP OQH41_16395 PF04324 BFD-like [2Fe-2S] binding domain OQH41_16400 PF00210 Ferritin-like domain OQH41_16405 PF15864 Protein glycosylation ligase OQH41_16405 PF04932 O-Antigen ligase OQH41_16405 PF11846 Virulence factor membrane-bound polymerase, C-terminal OQH41_16415 PF00114 Pilin (bacterial filament) OQH41_16415 PF07963 Prokaryotic N-terminal methylation motif OQH41_16425 PF04536 TPM domain OQH41_16430 PF04011 LemA family OQH41_16440 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster OQH41_16440 PF07992 Pyridine nucleotide-disulphide oxidoreductase OQH41_16445 PF04898 Glutamate synthase central domain OQH41_16445 PF01645 Conserved region in glutamate synthase OQH41_16445 PF01493 GXGXG motif OQH41_16445 PF00310 Glutamine amidotransferases class-II OQH41_16455 PF01761 3-dehydroquinate synthase OQH41_16460 PF01202 Shikimate kinase OQH41_16465 PF03958 Bacterial type II/III secretion system short domain OQH41_16465 PF07660 Secretin and TonB N terminus short domain OQH41_16465 PF11741 AMIN domain OQH41_16465 PF00263 Bacterial type II and III secretion system protein OQH41_16475 PF04350 Pilus assembly protein, PilO OQH41_16480 PF05137 Fimbrial assembly protein (PilN) OQH41_16485 PF11104 Type IV pilus assembly protein PilM; OQH41_16490 PF17092 Penicillin-binding protein OB-like domain OQH41_16490 PF00912 Transglycosylase OQH41_16490 PF00905 Penicillin binding protein transpeptidase domain OQH41_16495 PF13847 Methyltransferase domain OQH41_16505 PF00953 Glycosyl transferase family 4 OQH41_16510 PF01225 Mur ligase family, catalytic domain OQH41_16510 PF08245 Mur ligase middle domain OQH41_16510 PF02875 Mur ligase family, glutamate ligase domain OQH41_16515 PF01225 Mur ligase family, catalytic domain OQH41_16515 PF02875 Mur ligase family, glutamate ligase domain OQH41_16515 PF08245 Mur ligase middle domain OQH41_16520 PF03717 Penicillin-binding Protein dimerisation domain OQH41_16520 PF00905 Penicillin binding protein transpeptidase domain OQH41_16530 PF01795 MraW methylase family OQH41_16545 PF00749 tRNA synthetases class I (E and Q), catalytic domain OQH41_16560 PF00324 Amino acid permease OQH41_16590 PF01545 Cation efflux family OQH41_16595 PF00873 AcrB/AcrD/AcrF family OQH41_16600 PF00529 HlyD membrane-fusion protein of T1SS OQH41_16600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_16625 PF00005 ABC transporter OQH41_16625 PF12848 ABC transporter OQH41_16630 PF01053 Cys/Met metabolism PLP-dependent enzyme OQH41_16635 PF00106 short chain dehydrogenase OQH41_16640 PF00916 Sulfate permease family OQH41_16640 PF01740 STAS domain OQH41_16645 PF17674 HHH domain OQH41_16645 PF09371 Tex-like protein N-terminal domain OQH41_16645 PF00575 S1 RNA binding domain OQH41_16645 PF16921 Tex protein YqgF-like domain OQH41_16650 PF00072 Response regulator receiver domain OQH41_16650 PF00486 Transcriptional regulatory protein, C terminal OQH41_16655 PF00672 HAMP domain OQH41_16655 PF00512 His Kinase A (phospho-acceptor) domain OQH41_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_16665 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain OQH41_16665 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain OQH41_16670 PF00583 Acetyltransferase (GNAT) family OQH41_16690 PF00475 Imidazoleglycerol-phosphate dehydratase OQH41_16695 PF00117 Glutamine amidotransferase class-I OQH41_16710 PF00977 Histidine biosynthesis protein OQH41_16735 PF01636 Phosphotransferase enzyme family OQH41_16740 PF00977 Histidine biosynthesis protein OQH41_16780 PF02705 K+ potassium transporter OQH41_16790 PF00589 Phage integrase family OQH41_16790 PF13356 Arm DNA-binding domain OQH41_16810 PF01555 DNA methylase OQH41_16810 PF18273 Type III R-M EcoP15I C-terminal domain OQH41_16825 PF13007 Transposase C of IS166 homeodomain OQH41_16825 PF13817 IS66 C-terminal element OQH41_16825 PF03050 Transposase IS66 family OQH41_16825 PF13005 zinc-finger binding domain of transposase IS66 OQH41_16835 PF00664 ABC transporter transmembrane region OQH41_16835 PF00005 ABC transporter OQH41_16840 PF02321 Outer membrane efflux protein OQH41_16850 PF01389 OmpA-like transmembrane domain OQH41_16850 PF00691 OmpA family OQH41_16855 PF13359 DDE superfamily endonuclease OQH41_16855 PF13613 Helix-turn-helix of DDE superfamily endonuclease OQH41_16870 PF00271 Helicase conserved C-terminal domain OQH41_16870 PF00176 SNF2 family N-terminal domain OQH41_16935 PF07690 Major Facilitator Superfamily OQH41_16955 PF00873 AcrB/AcrD/AcrF family OQH41_16960 PF00529 HlyD membrane-fusion protein of T1SS OQH41_16960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_17010 PF02525 Flavodoxin-like fold OQH41_17015 PF01638 HxlR-like helix-turn-helix OQH41_17040 PF12833 Helix-turn-helix domain OQH41_17040 PF02311 AraC-like ligand binding domain OQH41_17045 PF00248 Aldo/keto reductase family OQH41_17065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_17065 PF03466 LysR substrate binding domain OQH41_17070 PF07690 Major Facilitator Superfamily OQH41_17090 PF01593 Flavin containing amine oxidoreductase OQH41_17095 PF05726 Pirin C-terminal cupin domain OQH41_17095 PF02678 Pirin OQH41_17100 PF00857 Isochorismatase family OQH41_17105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_17110 PF00171 Aldehyde dehydrogenase family OQH41_17115 PF00202 Aminotransferase class-III OQH41_17120 PF00155 Aminotransferase class I and II OQH41_17120 PF00392 Bacterial regulatory proteins, gntR family OQH41_17125 PF00324 Amino acid permease OQH41_17135 PF03591 AzlC protein OQH41_17145 PF00436 Single-strand binding protein family OQH41_17150 PF07690 Major Facilitator Superfamily OQH41_17160 PF03070 TENA/THI-4/PQQC family OQH41_17160 PF08543 Phosphomethylpyrimidine kinase OQH41_17160 PF02581 Thiamine monophosphate synthase OQH41_17165 PF06942 GlpM protein OQH41_17175 PF00107 Zinc-binding dehydrogenase OQH41_17175 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_17180 PF00440 Bacterial regulatory proteins, tetR family OQH41_17180 PF16925 Tetracyclin repressor-like, C-terminal domain OQH41_17185 PF17760 UvrA interaction domain OQH41_17185 PF17755 UvrA DNA-binding domain OQH41_17185 PF00005 ABC transporter OQH41_17200 PF02028 BCCT, betaine/carnitine/choline family transporter OQH41_17210 PF00474 Sodium:solute symporter family OQH41_17215 PF04341 Protein of unknown function, DUF485 OQH41_17220 PF00512 His Kinase A (phospho-acceptor) domain OQH41_17220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_17220 PF00672 HAMP domain OQH41_17220 PF01627 Hpt domain OQH41_17220 PF00072 Response regulator receiver domain OQH41_17230 PF00072 Response regulator receiver domain OQH41_17230 PF00196 Bacterial regulatory proteins, luxR family OQH41_17235 PF03358 NADPH-dependent FMN reductase OQH41_17240 PF00296 Luciferase-like monooxygenase OQH41_17245 PF01037 Lrp/AsnC ligand binding domain OQH41_17250 PF00857 Isochorismatase family OQH41_17255 PF00501 AMP-binding enzyme OQH41_17255 PF13193 AMP-binding enzyme C-terminal domain OQH41_17255 PF16177 Acetyl-coenzyme A synthetase N-terminus OQH41_17265 PF00924 Mechanosensitive ion channel OQH41_17270 PF04452 RNA methyltransferase OQH41_17275 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) OQH41_17280 PF00724 NADH:flavin oxidoreductase / NADH oxidase family OQH41_17300 PF02272 DHHA1 domain OQH41_17300 PF01368 DHH family OQH41_17300 PF17768 RecJ OB domain OQH41_17305 PF01243 Pyridoxamine 5'-phosphate oxidase OQH41_17305 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region OQH41_17310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I OQH41_17310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II OQH41_17310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III OQH41_17310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain OQH41_17315 PF00571 CBS domain OQH41_17315 PF00478 IMP dehydrogenase / GMP reductase domain OQH41_17320 PF03692 Putative zinc- or iron-chelating domain OQH41_17325 PF01613 Flavin reductase like domain OQH41_17325 PF00258 Flavodoxin OQH41_17330 PF00593 TonB dependent receptor OQH41_17330 PF07715 TonB-dependent Receptor Plug Domain OQH41_17335 PF01169 Uncharacterized protein family UPF0016 OQH41_17345 PF00364 Biotin-requiring enzyme OQH41_17345 PF02817 e3 binding domain OQH41_17345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OQH41_17350 PF17831 Pyruvate dehydrogenase E1 component middle domain OQH41_17350 PF00456 Transketolase, thiamine diphosphate binding domain OQH41_17355 PF01551 Peptidase family M23 OQH41_17365 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase OQH41_17370 PF12327 FtsZ family, C-terminal domain OQH41_17370 PF00091 Tubulin/FtsZ family, GTPase domain OQH41_17375 PF02491 SHS2 domain inserted in FTSA OQH41_17380 PF03799 Cell division protein FtsQ OQH41_17380 PF08478 POTRA domain, FtsQ-type OQH41_17385 PF07478 D-ala D-ala ligase C-terminus OQH41_17385 PF01820 D-ala D-ala ligase N-terminus OQH41_17390 PF08245 Mur ligase middle domain OQH41_17390 PF02875 Mur ligase family, glutamate ligase domain OQH41_17390 PF01225 Mur ligase family, catalytic domain OQH41_17395 PF04101 Glycosyltransferase family 28 C-terminal domain OQH41_17395 PF03033 Glycosyltransferase family 28 N-terminal domain OQH41_17400 PF02951 Prokaryotic glutathione synthetase, N-terminal domain OQH41_17400 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain OQH41_17410 PF00593 TonB dependent receptor OQH41_17410 PF07715 TonB-dependent Receptor Plug Domain OQH41_17420 PF00156 Phosphoribosyl transferase domain OQH41_17425 PF03372 Endonuclease/Exonuclease/phosphatase family OQH41_17440 PF07859 alpha/beta hydrolase fold OQH41_17445 PF07694 5TMR of 5TMR-LYT OQH41_17445 PF00990 Diguanylate cyclase, GGDEF domain OQH41_17450 PF02683 Cytochrome C biogenesis protein transmembrane region OQH41_17450 PF11412 Disulphide bond corrector protein DsbC OQH41_17480 PF00576 HIUase/Transthyretin family OQH41_17485 PF00860 Permease family OQH41_17495 PF01494 FAD binding domain OQH41_17500 PF03561 Allantoicase repeat OQH41_17505 PF04115 Ureidoglycolate lyase OQH41_17510 PF00106 short chain dehydrogenase OQH41_17515 PF00204 DNA gyrase B OQH41_17515 PF00986 DNA gyrase B subunit, carboxyl terminus OQH41_17515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_17515 PF01751 Toprim domain OQH41_17520 PF05728 Uncharacterised protein family (UPF0227) OQH41_17565 PF01476 LysM domain OQH41_17565 PF01510 N-acetylmuramoyl-L-alanine amidase OQH41_17565 PF01471 Putative peptidoglycan binding domain OQH41_17570 PF13296 Putative type VI secretion system Rhs element Vgr OQH41_17570 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) OQH41_17570 PF04717 Type VI secretion system, phage-baseplate injector OQH41_17575 PF02600 Disulfide bond formation protein DsbB OQH41_17580 PF04262 Glutamate-cysteine ligase OQH41_17595 PF04286 Protein of unknown function (DUF445) OQH41_17600 PF00155 Aminotransferase class I and II OQH41_17605 PF01554 MatE OQH41_17610 PF00106 short chain dehydrogenase OQH41_17620 PF00072 Response regulator receiver domain OQH41_17620 PF00486 Transcriptional regulatory protein, C terminal OQH41_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_17625 PF00512 His Kinase A (phospho-acceptor) domain OQH41_17625 PF00989 PAS fold OQH41_17625 PF11808 Phosphate regulon sensor protein PhoR OQH41_17635 PF02666 Phosphatidylserine decarboxylase OQH41_17640 PF00581 Rhodanese-like domain OQH41_17645 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family OQH41_17645 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain OQH41_17650 PF02580 D-Tyr-tRNA(Tyr) deacylase OQH41_17675 PF00925 GTP cyclohydrolase II OQH41_17675 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase OQH41_17680 PF00885 6,7-dimethyl-8-ribityllumazine synthase OQH41_17685 PF01029 NusB family OQH41_17690 PF00586 AIR synthase related protein, N-terminal domain OQH41_17690 PF02769 AIR synthase related protein, C-terminal domain OQH41_17695 PF04608 Phosphatidylglycerophosphatase A OQH41_17700 PF14602 Hexapeptide repeat of succinyl-transferase OQH41_17700 PF00132 Bacterial transferase hexapeptide (six repeats) OQH41_17700 PF12804 MobA-like NTP transferase domain OQH41_17705 PF01380 SIS domain OQH41_17715 PF01177 Asp/Glu/Hydantoin racemase OQH41_17730 PF00491 Arginase family OQH41_17735 PF01979 Amidohydrolase family OQH41_17740 PF00324 Amino acid permease OQH41_17745 PF00221 Aromatic amino acid lyase OQH41_17750 PF17392 Urocanase C-terminal domain OQH41_17750 PF17391 Urocanase N-terminal domain OQH41_17750 PF01175 Urocanase Rossmann-like domain OQH41_17755 PF05962 HutD OQH41_17760 PF00392 Bacterial regulatory proteins, gntR family OQH41_17760 PF07702 UTRA domain OQH41_17770 PF07683 Cobalamin synthesis protein cobW C-terminal domain OQH41_17770 PF02492 CobW/HypB/UreG, nucleotide-binding domain OQH41_17780 PF00324 Amino acid permease OQH41_17790 PF14497 Glutathione S-transferase, C-terminal domain OQH41_17790 PF02798 Glutathione S-transferase, N-terminal domain OQH41_17795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OQH41_17805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily OQH41_17810 PF04463 Protein of unknown function (DUF523) OQH41_17815 PF01554 MatE OQH41_17820 PF01758 Sodium Bile acid symporter family OQH41_17825 PF00857 Isochorismatase family OQH41_17830 PF00701 Dihydrodipicolinate synthetase family OQH41_17840 PF01259 SAICAR synthetase OQH41_17850 PF01226 Formate/nitrite transporter OQH41_17855 PF12002 MgsA AAA+ ATPase C terminal OQH41_17855 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_17855 PF16193 AAA C-terminal domain OQH41_17860 PF07995 Glucose / Sorbosone dehydrogenase OQH41_17865 PF03692 Putative zinc- or iron-chelating domain OQH41_17870 PF07043 Protein of unknown function (DUF1328) OQH41_17885 PF00730 HhH-GPD superfamily base excision DNA repair protein OQH41_17885 PF10576 Iron-sulfur binding domain of endonuclease III OQH41_17885 PF00633 Helix-hairpin-helix motif OQH41_17885 PF14815 NUDIX domain OQH41_17900 PF03352 Methyladenine glycosylase OQH41_17905 PF08240 Alcohol dehydrogenase GroES-like domain OQH41_17905 PF00107 Zinc-binding dehydrogenase OQH41_17910 PF00155 Aminotransferase class I and II OQH41_17910 PF00392 Bacterial regulatory proteins, gntR family OQH41_17925 PF03466 LysR substrate binding domain OQH41_17925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_17930 PF00248 Aldo/keto reductase family OQH41_17935 PF07690 Major Facilitator Superfamily OQH41_17945 PF01113 Dihydrodipicolinate reductase, N-terminus OQH41_17945 PF05173 Dihydrodipicolinate reductase, C-terminus OQH41_17955 PF01556 DnaJ C terminal domain OQH41_17955 PF00684 DnaJ central domain OQH41_17955 PF00226 DnaJ domain OQH41_17965 PF00873 AcrB/AcrD/AcrF family OQH41_17970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion OQH41_17975 PF08361 MAATS-type transcriptional repressor, C-terminal region OQH41_17975 PF00440 Bacterial regulatory proteins, tetR family OQH41_17980 PF00311 Phosphoenolpyruvate carboxylase OQH41_17985 PF00860 Permease family OQH41_17990 PF03466 LysR substrate binding domain OQH41_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_18005 PF00920 Dehydratase family OQH41_18010 PF00551 Formyl transferase OQH41_18010 PF02911 Formyl transferase, C-terminal domain OQH41_18015 PF01189 16S rRNA methyltransferase RsmB/F OQH41_18015 PF01029 NusB family OQH41_18025 PF00209 Sodium:neurotransmitter symporter family OQH41_18065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD OQH41_18070 PF07859 alpha/beta hydrolase fold OQH41_18090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_18090 PF03466 LysR substrate binding domain OQH41_18095 PF01025 GrpE OQH41_18100 PF00012 Hsp70 protein OQH41_18125 PF13406 Transglycosylase SLT domain OQH41_18130 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain OQH41_18130 PF02222 ATP-grasp domain OQH41_18135 PF00731 AIR carboxylase OQH41_18145 PF08245 Mur ligase middle domain OQH41_18145 PF02875 Mur ligase family, glutamate ligase domain OQH41_18145 PF01225 Mur ligase family, catalytic domain OQH41_18155 PF01569 PAP2 superfamily OQH41_18160 PF03741 Integral membrane protein TerC family OQH41_18170 PF03738 Glutathionylspermidine synthase preATP-grasp OQH41_18175 PF00355 Rieske [2Fe-2S] domain OQH41_18180 PF01979 Amidohydrolase family OQH41_18185 PF00156 Phosphoribosyl transferase domain OQH41_18195 PF13098 Thioredoxin-like domain OQH41_18195 PF10411 Disulfide bond isomerase protein N-terminus OQH41_18200 PF16916 Dimerisation domain of Zinc Transporter OQH41_18200 PF01545 Cation efflux family OQH41_18205 PF02583 Metal-sensitive transcriptional repressor OQH41_18260 PF00589 Phage integrase family OQH41_18260 PF14659 Phage integrase, N-terminal SAM-like domain OQH41_18260 PF13356 Arm DNA-binding domain OQH41_18265 PF12631 MnmE helical domain OQH41_18265 PF01926 50S ribosome-binding GTPase OQH41_18265 PF10396 GTP-binding protein TrmE N-terminus OQH41_18270 PF02096 60Kd inner membrane protein OQH41_18270 PF14849 YidC periplasmic domain OQH41_18275 PF01809 Putative membrane protein insertion efficiency factor OQH41_18280 PF00825 Ribonuclease P OQH41_18285 PF00468 Ribosomal protein L34 OQH41_18295 PF04267 Sarcosine oxidase, delta subunit family OQH41_18300 PF01266 FAD dependent oxidoreductase OQH41_18305 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain OQH41_18305 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain OQH41_18310 PF00551 Formyl transferase OQH41_18320 PF00893 Small Multidrug Resistance protein OQH41_18325 PF00551 Formyl transferase OQH41_18330 PF00543 Nitrogen regulatory protein P-II OQH41_18335 PF01571 Aminomethyltransferase folate-binding domain OQH41_18335 PF08669 Glycine cleavage T-protein C-terminal barrel domain OQH41_18345 PF00970 Oxidoreductase FAD-binding domain OQH41_18345 PF00111 2Fe-2S iron-sulfur cluster binding domain OQH41_18345 PF00175 Oxidoreductase NAD-binding domain OQH41_18365 PF00072 Response regulator receiver domain OQH41_18365 PF00196 Bacterial regulatory proteins, luxR family OQH41_18370 PF00672 HAMP domain OQH41_18370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OQH41_18370 PF07730 Histidine kinase OQH41_18370 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term OQH41_18375 PF01571 Aminomethyltransferase folate-binding domain OQH41_18375 PF08669 Glycine cleavage T-protein C-terminal barrel domain OQH41_18400 PF17762 HTH domain found in ParB protein OQH41_18400 PF02195 ParB-like nuclease domain OQH41_18405 PF13614 AAA domain OQH41_18460 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system OQH41_18465 PF13173 AAA domain OQH41_18465 PF13635 Domain of unknown function (DUF4143) OQH41_18495 PF13610 DDE domain OQH41_18500 PF02600 Disulfide bond formation protein DsbB OQH41_18505 PF00158 Sigma-54 interaction domain OQH41_18505 PF01590 GAF domain OQH41_18515 PF00795 Carbon-nitrogen hydrolase OQH41_18520 PF04055 Radical SAM superfamily OQH41_18530 PF00586 AIR synthase related protein, N-terminal domain OQH41_18530 PF02769 AIR synthase related protein, C-terminal domain OQH41_18640 PF05973 Phage derived protein Gp49-like (DUF891) OQH41_18660 PF13737 Transposase DDE domain OQH41_18690 PF13180 PDZ domain OQH41_18715 PF13737 Transposase DDE domain OQH41_18725 PF00990 Diguanylate cyclase, GGDEF domain OQH41_18730 PF02080 TrkA-C domain OQH41_18730 PF02254 TrkA-N domain OQH41_18730 PF00999 Sodium/hydrogen exchanger family OQH41_18735 PF00085 Thioredoxin OQH41_18770 PF00004 ATPase family associated with various cellular activities (AAA) OQH41_18770 PF07724 AAA domain (Cdc48 subfamily) OQH41_18770 PF17871 AAA lid domain OQH41_18770 PF10431 C-terminal, D2-small domain, of ClpB protein OQH41_18770 PF02861 Clp amino terminal domain, pathogenicity island component OQH41_18775 PF00011 Hsp20/alpha crystallin family OQH41_18785 PF13737 Transposase DDE domain OQH41_18790 PF00892 EamA-like transporter family OQH41_18795 PF00753 Metallo-beta-lactamase superfamily OQH41_18805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_18805 PF03466 LysR substrate binding domain OQH41_18810 PF00296 Luciferase-like monooxygenase OQH41_18820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family OQH41_18820 PF03466 LysR substrate binding domain OQH41_18825 PF01638 HxlR-like helix-turn-helix OQH41_18845 PF00589 Phage integrase family OQH41_18845 PF13356 Arm DNA-binding domain OQH41_18850 PF01645 Conserved region in glutamate synthase OQH41_18855 PF01493 GXGXG motif OQH41_18865 PF00120 Glutamine synthetase, catalytic domain OQH41_18875 PF00909 Ammonium Transporter Family OQH41_18880 PF00909 Ammonium Transporter Family OQH41_18900 PF07660 Secretin and TonB N terminus short domain OQH41_18900 PF00593 TonB dependent receptor OQH41_18900 PF07715 TonB-dependent Receptor Plug Domain OQH41_18925 PF00239 Resolvase, N terminal domain OQH41_18925 PF02796 Helix-turn-helix domain of resolvase OQH41_18935 PF02627 Carboxymuconolactone decarboxylase family OQH41_18940 PF01381 Helix-turn-helix OQH41_18945 PF05973 Phage derived protein Gp49-like (DUF891) OQH41_18955 PF07669 Eco57I restriction-modification methylase OQH41_18960 PF06616 BsuBI/PstI restriction endonuclease domain OQH41_18960 PF17728 BsuBI/PstI restriction endonuclease HTH domain OQH41_19005 PF01051 Initiator Replication protein OQH41_19010 PF00892 EamA-like transporter family OQH41_19020 PF01051 Initiator Replication protein OQH41_19040 PF00313 'Cold-shock' DNA-binding domain OQH41_19065 PF01965 DJ-1/PfpI family OQH41_19065 PF12833 Helix-turn-helix domain OQH41_19070 PF00557 Metallopeptidase family M24 OQH41_19070 PF01321 Creatinase/Prolidase N-terminal domain OQH41_19075 PF00083 Sugar (and other) transporter OQH41_19075 PF08946 Osmosensory transporter coiled coil OQH41_19080 PF01051 Initiator Replication protein OQH41_19105 PF01850 PIN domain OQH41_19110 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin OQH41_19130 PF04221 RelB antitoxin OQH41_19165 PF03389 MobA/MobL family OQH41_19205 PF03389 MobA/MobL family