locus-tag class description FI878_00005 PF00308 Bacterial dnaA protein FI878_00005 PF08299 Bacterial dnaA protein helix-turn-helix FI878_00005 PF11638 DnaA N-terminal domain FI878_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain FI878_00010 PF02767 DNA polymerase III beta subunit, central domain FI878_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain FI878_00015 PF02463 RecF/RecN/SMC N terminal domain FI878_00020 PF18053 DNA gyrase B subunit insert domain FI878_00020 PF01751 Toprim domain FI878_00020 PF00204 DNA gyrase B FI878_00020 PF00986 DNA gyrase B subunit, carboxyl terminus FI878_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_00030 PF09335 SNARE associated Golgi protein FI878_00035 PF12848 ABC transporter FI878_00035 PF00005 ABC transporter FI878_00055 PF01521 Iron-sulphur cluster biosynthesis FI878_00060 PF00561 alpha/beta hydrolase fold FI878_00065 PF03702 Anhydro-N-acetylmuramic acid kinase FI878_00070 PF00579 tRNA synthetases class I (W and Y) FI878_00115 PF00209 Sodium:neurotransmitter symporter family FI878_00125 PF01189 16S rRNA methyltransferase RsmB/F FI878_00125 PF01029 NusB family FI878_00130 PF02911 Formyl transferase, C-terminal domain FI878_00130 PF00551 Formyl transferase FI878_00135 PF00920 Dehydratase family FI878_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_00150 PF03466 LysR substrate binding domain FI878_00155 PF00860 Permease family FI878_00160 PF00311 Phosphoenolpyruvate carboxylase FI878_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region FI878_00165 PF00440 Bacterial regulatory proteins, tetR family FI878_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_00175 PF00873 AcrB/AcrD/AcrF family FI878_00185 PF00226 DnaJ domain FI878_00185 PF01556 DnaJ C terminal domain FI878_00185 PF00684 DnaJ central domain FI878_00195 PF01113 Dihydrodipicolinate reductase, N-terminus FI878_00195 PF05173 Dihydrodipicolinate reductase, C-terminus FI878_00205 PF07690 Major Facilitator Superfamily FI878_00210 PF00248 Aldo/keto reductase family FI878_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_00215 PF03466 LysR substrate binding domain FI878_00230 PF00155 Aminotransferase class I and II FI878_00230 PF00392 Bacterial regulatory proteins, gntR family FI878_00235 PF00107 Zinc-binding dehydrogenase FI878_00235 PF08240 Alcohol dehydrogenase GroES-like domain FI878_00240 PF03352 Methyladenine glycosylase FI878_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein FI878_00255 PF00633 Helix-hairpin-helix motif FI878_00255 PF10576 Iron-sulfur binding domain of endonuclease III FI878_00255 PF14815 NUDIX domain FI878_00270 PF07043 Protein of unknown function (DUF1328) FI878_00275 PF13737 Transposase DDE domain FI878_00280 PF03692 Putative zinc- or iron-chelating domain FI878_00285 PF07995 Glucose / Sorbosone dehydrogenase FI878_00290 PF12002 MgsA AAA+ ATPase C terminal FI878_00290 PF00004 ATPase family associated with various cellular activities (AAA) FI878_00290 PF16193 AAA C-terminal domain FI878_00295 PF01226 Formate/nitrite transporter FI878_00305 PF01259 SAICAR synthetase FI878_00315 PF00701 Dihydrodipicolinate synthetase family FI878_00320 PF00857 Isochorismatase family FI878_00325 PF01758 Sodium Bile acid symporter family FI878_00330 PF01554 MatE FI878_00335 PF04463 Protein of unknown function (DUF523) FI878_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FI878_00350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FI878_00355 PF14497 Glutathione S-transferase, C-terminal domain FI878_00355 PF02798 Glutathione S-transferase, N-terminal domain FI878_00385 PF02492 CobW/HypB/UreG, nucleotide-binding domain FI878_00385 PF07683 Cobalamin synthesis protein cobW C-terminal domain FI878_00395 PF00392 Bacterial regulatory proteins, gntR family FI878_00395 PF07702 UTRA domain FI878_00400 PF05962 HutD FI878_00405 PF17391 Urocanase N-terminal domain FI878_00405 PF01175 Urocanase Rossmann-like domain FI878_00405 PF17392 Urocanase C-terminal domain FI878_00410 PF00221 Aromatic amino acid lyase FI878_00415 PF00324 Amino acid permease FI878_00420 PF01979 Amidohydrolase family FI878_00425 PF00491 Arginase family FI878_00440 PF01177 Asp/Glu/Hydantoin racemase FI878_00445 PF03050 Transposase IS66 family FI878_00445 PF13817 IS66 C-terminal element FI878_00445 PF13007 Transposase C of IS166 homeodomain FI878_00445 PF13005 zinc-finger binding domain of transposase IS66 FI878_00460 PF07859 alpha/beta hydrolase fold FI878_00465 PF08240 Alcohol dehydrogenase GroES-like domain FI878_00465 PF00107 Zinc-binding dehydrogenase FI878_00470 PF00171 Aldehyde dehydrogenase family FI878_00475 PF00158 Sigma-54 interaction domain FI878_00475 PF02954 Bacterial regulatory protein, Fis family FI878_00475 PF13426 PAS domain FI878_00480 PF12762 ISXO2-like transposase domain FI878_00485 PF01494 FAD binding domain FI878_00490 PF07690 Major Facilitator Superfamily FI878_00495 PF03466 LysR substrate binding domain FI878_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_00540 PF00239 Resolvase, N terminal domain FI878_00540 PF02796 Helix-turn-helix domain of resolvase FI878_00545 PF08774 VRR-NUC domain FI878_00545 PF04851 Type III restriction enzyme, res subunit FI878_00550 PF01380 SIS domain FI878_00555 PF14602 Hexapeptide repeat of succinyl-transferase FI878_00555 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_00555 PF12804 MobA-like NTP transferase domain FI878_00560 PF04608 Phosphatidylglycerophosphatase A FI878_00565 PF00586 AIR synthase related protein, N-terminal domain FI878_00565 PF02769 AIR synthase related protein, C-terminal domain FI878_00570 PF01029 NusB family FI878_00575 PF00885 6,7-dimethyl-8-ribityllumazine synthase FI878_00580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FI878_00580 PF00925 GTP cyclohydrolase II FI878_00610 PF02580 D-Tyr-tRNA(Tyr) deacylase FI878_00615 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FI878_00615 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FI878_00620 PF00581 Rhodanese-like domain FI878_00625 PF02666 Phosphatidylserine decarboxylase FI878_00630 PF03069 Acetamidase/Formamidase family FI878_00650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_00650 PF00512 His Kinase A (phospho-acceptor) domain FI878_00650 PF00989 PAS fold FI878_00650 PF11808 Phosphate regulon sensor protein PhoR FI878_00655 PF00486 Transcriptional regulatory protein, C terminal FI878_00655 PF00072 Response regulator receiver domain FI878_00665 PF00106 short chain dehydrogenase FI878_00670 PF01554 MatE FI878_00675 PF00155 Aminotransferase class I and II FI878_00680 PF04286 Protein of unknown function (DUF445) FI878_00695 PF04262 Glutamate-cysteine ligase FI878_00700 PF02600 Disulfide bond formation protein DsbB FI878_00705 PF04717 Type VI secretion system, phage-baseplate injector FI878_00710 PF01476 LysM domain FI878_00710 PF00877 NlpC/P60 family FI878_00725 PF05728 Uncharacterised protein family (UPF0227) FI878_00730 PF00204 DNA gyrase B FI878_00730 PF00986 DNA gyrase B subunit, carboxyl terminus FI878_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_00730 PF01751 Toprim domain FI878_00735 PF00106 short chain dehydrogenase FI878_00740 PF04115 Ureidoglycolate lyase FI878_00745 PF03561 Allantoicase repeat FI878_00750 PF01494 FAD binding domain FI878_00760 PF00860 Permease family FI878_00765 PF00576 HIUase/Transthyretin family FI878_00795 PF02683 Cytochrome C biogenesis protein transmembrane region FI878_00795 PF11412 Disulphide bond corrector protein DsbC FI878_00800 PF00990 Diguanylate cyclase, GGDEF domain FI878_00800 PF07694 5TMR of 5TMR-LYT FI878_00805 PF07859 alpha/beta hydrolase fold FI878_00815 PF03960 ArsC family FI878_00820 PF03372 Endonuclease/Exonuclease/phosphatase family FI878_00825 PF00156 Phosphoribosyl transferase domain FI878_00830 PF00593 TonB dependent receptor FI878_00830 PF07715 TonB-dependent Receptor Plug Domain FI878_00840 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FI878_00840 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FI878_00845 PF03033 Glycosyltransferase family 28 N-terminal domain FI878_00845 PF04101 Glycosyltransferase family 28 C-terminal domain FI878_00850 PF08245 Mur ligase middle domain FI878_00850 PF02875 Mur ligase family, glutamate ligase domain FI878_00850 PF01225 Mur ligase family, catalytic domain FI878_00855 PF01820 D-ala D-ala ligase N-terminus FI878_00855 PF07478 D-ala D-ala ligase C-terminus FI878_00860 PF08478 POTRA domain, FtsQ-type FI878_00860 PF03799 Cell division protein FtsQ FI878_00865 PF02491 SHS2 domain inserted in FTSA FI878_00870 PF00091 Tubulin/FtsZ family, GTPase domain FI878_00870 PF12327 FtsZ family, C-terminal domain FI878_00875 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FI878_00885 PF01551 Peptidase family M23 FI878_00890 PF17831 Pyruvate dehydrogenase E1 component middle domain FI878_00890 PF00456 Transketolase, thiamine diphosphate binding domain FI878_00895 PF02817 e3 binding domain FI878_00895 PF00364 Biotin-requiring enzyme FI878_00895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FI878_00905 PF01169 Uncharacterized protein family UPF0016 FI878_00910 PF07715 TonB-dependent Receptor Plug Domain FI878_00910 PF00593 TonB dependent receptor FI878_00915 PF01613 Flavin reductase like domain FI878_00915 PF00258 Flavodoxin FI878_00920 PF03692 Putative zinc- or iron-chelating domain FI878_00925 PF00571 CBS domain FI878_00925 PF00478 IMP dehydrogenase / GMP reductase domain FI878_00930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FI878_00930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FI878_00930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FI878_00930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FI878_00935 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FI878_00935 PF01243 Pyridoxamine 5'-phosphate oxidase FI878_00940 PF17768 RecJ OB domain FI878_00940 PF01368 DHH family FI878_00940 PF02272 DHHA1 domain FI878_00960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_00965 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FI878_00970 PF04452 RNA methyltransferase FI878_00975 PF00924 Mechanosensitive ion channel FI878_00985 PF16177 Acetyl-coenzyme A synthetase N-terminus FI878_00985 PF13193 AMP-binding enzyme C-terminal domain FI878_00985 PF00501 AMP-binding enzyme FI878_00990 PF00857 Isochorismatase family FI878_00995 PF01037 Lrp/AsnC ligand binding domain FI878_01000 PF00872 Transposase, Mutator family FI878_01005 PF00296 Luciferase-like monooxygenase FI878_01010 PF03358 NADPH-dependent FMN reductase FI878_01015 PF00196 Bacterial regulatory proteins, luxR family FI878_01015 PF00072 Response regulator receiver domain FI878_01025 PF00072 Response regulator receiver domain FI878_01025 PF00512 His Kinase A (phospho-acceptor) domain FI878_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_01025 PF00672 HAMP domain FI878_01025 PF01627 Hpt domain FI878_01030 PF04341 Protein of unknown function, DUF485 FI878_01035 PF00474 Sodium:solute symporter family FI878_01045 PF02028 BCCT, betaine/carnitine/choline family transporter FI878_01055 PF00990 Diguanylate cyclase, GGDEF domain FI878_01055 PF17158 Membrane-associated sensor, integral membrane domain FI878_01065 PF17755 UvrA DNA-binding domain FI878_01065 PF00005 ABC transporter FI878_01065 PF17760 UvrA interaction domain FI878_01070 PF00440 Bacterial regulatory proteins, tetR family FI878_01070 PF16925 Tetracyclin repressor-like, C-terminal domain FI878_01075 PF08240 Alcohol dehydrogenase GroES-like domain FI878_01075 PF00107 Zinc-binding dehydrogenase FI878_01085 PF06942 GlpM protein FI878_01090 PF03070 TENA/THI-4/PQQC family FI878_01090 PF08543 Phosphomethylpyrimidine kinase FI878_01090 PF02581 Thiamine monophosphate synthase FI878_01100 PF07690 Major Facilitator Superfamily FI878_01105 PF00436 Single-strand binding protein family FI878_01115 PF03591 AzlC protein FI878_01125 PF00324 Amino acid permease FI878_01130 PF00155 Aminotransferase class I and II FI878_01130 PF00392 Bacterial regulatory proteins, gntR family FI878_01135 PF00202 Aminotransferase class-III FI878_01140 PF00171 Aldehyde dehydrogenase family FI878_01145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_01150 PF00857 Isochorismatase family FI878_01170 PF01593 Flavin containing amine oxidoreductase FI878_01190 PF07690 Major Facilitator Superfamily FI878_01195 PF03466 LysR substrate binding domain FI878_01195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_01215 PF00248 Aldo/keto reductase family FI878_01220 PF02311 AraC-like ligand binding domain FI878_01220 PF12833 Helix-turn-helix domain FI878_01255 PF01638 HxlR-like helix-turn-helix FI878_01265 PF02525 Flavodoxin-like fold FI878_01285 PF02705 K+ potassium transporter FI878_01310 PF00230 Major intrinsic protein FI878_01325 PF00977 Histidine biosynthesis protein FI878_01330 PF01636 Phosphotransferase enzyme family FI878_01345 PF03992 Antibiotic biosynthesis monooxygenase FI878_01360 PF00977 Histidine biosynthesis protein FI878_01375 PF00117 Glutamine amidotransferase class-I FI878_01380 PF00475 Imidazoleglycerol-phosphate dehydratase FI878_01400 PF00583 Acetyltransferase (GNAT) family FI878_01405 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain FI878_01405 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain FI878_01415 PF00512 His Kinase A (phospho-acceptor) domain FI878_01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_01415 PF00672 HAMP domain FI878_01420 PF00072 Response regulator receiver domain FI878_01420 PF00486 Transcriptional regulatory protein, C terminal FI878_01425 PF09371 Tex-like protein N-terminal domain FI878_01425 PF17674 HHH domain FI878_01425 PF00575 S1 RNA binding domain FI878_01425 PF16921 Tex protein YqgF-like domain FI878_01430 PF01740 STAS domain FI878_01430 PF00916 Sulfate permease family FI878_01435 PF00106 short chain dehydrogenase FI878_01440 PF01053 Cys/Met metabolism PLP-dependent enzyme FI878_01445 PF12848 ABC transporter FI878_01445 PF00005 ABC transporter FI878_01470 PF04191 Phospholipid methyltransferase FI878_01490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_01490 PF00529 HlyD membrane-fusion protein of T1SS FI878_01495 PF00873 AcrB/AcrD/AcrF family FI878_01500 PF01545 Cation efflux family FI878_01530 PF00324 Amino acid permease FI878_01545 PF00749 tRNA synthetases class I (E and Q), catalytic domain FI878_01560 PF01795 MraW methylase family FI878_01570 PF03717 Penicillin-binding Protein dimerisation domain FI878_01570 PF00905 Penicillin binding protein transpeptidase domain FI878_01575 PF01225 Mur ligase family, catalytic domain FI878_01575 PF02875 Mur ligase family, glutamate ligase domain FI878_01575 PF08245 Mur ligase middle domain FI878_01580 PF01225 Mur ligase family, catalytic domain FI878_01580 PF02875 Mur ligase family, glutamate ligase domain FI878_01580 PF08245 Mur ligase middle domain FI878_01585 PF00953 Glycosyl transferase family 4 FI878_01595 PF13847 Methyltransferase domain FI878_01600 PF00905 Penicillin binding protein transpeptidase domain FI878_01600 PF00912 Transglycosylase FI878_01600 PF17092 Penicillin-binding protein OB-like domain FI878_01625 PF11741 AMIN domain FI878_01625 PF00263 Bacterial type II and III secretion system protein FI878_01625 PF07660 Secretin and TonB N terminus short domain FI878_01625 PF03958 Bacterial type II/III secretion system short domain FI878_01630 PF01202 Shikimate kinase FI878_01635 PF01761 3-dehydroquinate synthase FI878_01645 PF01493 GXGXG motif FI878_01645 PF04898 Glutamate synthase central domain FI878_01645 PF00310 Glutamine amidotransferases class-II FI878_01645 PF01645 Conserved region in glutamate synthase FI878_01650 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_01650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FI878_01660 PF04011 LemA family FI878_01665 PF04536 TPM domain FI878_01675 PF00114 Pilin (bacterial filament) FI878_01675 PF07963 Prokaryotic N-terminal methylation motif FI878_01685 PF04932 O-Antigen ligase FI878_01685 PF11846 Virulence factor membrane-bound polymerase, C-terminal FI878_01685 PF15864 Protein glycosylation ligase FI878_01690 PF00210 Ferritin-like domain FI878_01695 PF04324 BFD-like [2Fe-2S] binding domain FI878_01700 PF01042 Endoribonuclease L-PSP FI878_01705 PF13291 ACT domain FI878_01705 PF04607 Region found in RelA / SpoT proteins FI878_01705 PF02824 TGS domain FI878_01715 PF01192 RNA polymerase Rpb6 FI878_01720 PF00625 Guanylate kinase FI878_01725 PF02401 LytB protein FI878_01765 PF00886 Ribosomal protein S16 FI878_01770 PF01782 RimM N-terminal domain FI878_01770 PF05239 PRC-barrel domain FI878_01775 PF01746 tRNA (Guanine-1)-methyltransferase FI878_01780 PF01245 Ribosomal protein L19 FI878_01785 PF00561 alpha/beta hydrolase fold FI878_01790 PF03280 Proteobacterial lipase chaperone protein FI878_01795 PF16198 tRNA pseudouridylate synthase B C-terminal domain FI878_01795 PF09157 Pseudouridine synthase II TruB, C-terminal FI878_01795 PF01509 TruB family pseudouridylate synthase (N terminal domain) FI878_01800 PF01925 Sulfite exporter TauE/SafE FI878_01810 PF00892 EamA-like transporter family FI878_01815 PF00892 EamA-like transporter family FI878_01820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FI878_01820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FI878_01825 PF01565 FAD binding domain FI878_01825 PF02913 FAD linked oxidases, C-terminal domain FI878_01835 PF03992 Antibiotic biosynthesis monooxygenase FI878_01840 PF02525 Flavodoxin-like fold FI878_01850 PF07690 Major Facilitator Superfamily FI878_01855 PF12805 FUSC-like inner membrane protein yccS FI878_01860 PF00080 Copper/zinc superoxide dismutase (SODC) FI878_01865 PF01594 AI-2E family transporter FI878_01870 PF13614 AAA domain FI878_01900 PF00324 Amino acid permease FI878_01905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FI878_01905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FI878_01910 PF00202 Aminotransferase class-III FI878_01915 PF04958 Arginine N-succinyltransferase beta subunit FI878_01920 PF00171 Aldehyde dehydrogenase family FI878_01925 PF04996 Succinylarginine dihydrolase FI878_01930 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FI878_01945 PF05922 Peptidase inhibitor I9 FI878_01945 PF00082 Subtilase family FI878_01960 PF03466 LysR substrate binding domain FI878_01960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_01965 PF00892 EamA-like transporter family FI878_01975 PF02092 Glycyl-tRNA synthetase beta subunit FI878_01975 PF05746 DALR anticodon binding domain FI878_01980 PF02091 Glycyl-tRNA synthetase alpha subunit FI878_02005 PF00571 CBS domain FI878_02010 PF04024 PspC domain FI878_02020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_02020 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_02020 PF12806 Acetyl-CoA dehydrogenase C-terminal like FI878_02020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_02030 PF01488 Shikimate / quinate 5-dehydrogenase FI878_02030 PF08501 Shikimate dehydrogenase substrate binding domain FI878_02030 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FI878_02035 PF01218 Coproporphyrinogen III oxidase FI878_02040 PF00925 GTP cyclohydrolase II FI878_02045 PF02780 Transketolase, C-terminal domain FI878_02045 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FI878_02045 PF02779 Transketolase, pyrimidine binding domain FI878_02050 PF00459 Inositol monophosphatase family FI878_02055 PF12343 Cold shock protein DEAD box A FI878_02055 PF00270 DEAD/DEAH box helicase FI878_02055 PF03880 DbpA RNA binding domain FI878_02055 PF00271 Helicase conserved C-terminal domain FI878_02065 PF00005 ABC transporter FI878_02070 PF02405 Permease MlaE FI878_02080 PF05494 MlaC protein FI878_02090 PF01544 CorA-like Mg2+ transporter protein FI878_02095 PF03641 Possible lysine decarboxylase FI878_02100 PF00293 NUDIX domain FI878_02105 PF00156 Phosphoribosyl transferase domain FI878_02110 PF00270 DEAD/DEAH box helicase FI878_02110 PF00271 Helicase conserved C-terminal domain FI878_02110 PF17191 RecG wedge domain FI878_02125 PF01553 Acyltransferase FI878_02135 PF00375 Sodium:dicarboxylate symporter family FI878_02145 PF01926 50S ribosome-binding GTPase FI878_02150 PF02082 Transcriptional regulator FI878_02155 PF00970 Oxidoreductase FAD-binding domain FI878_02155 PF00175 Oxidoreductase NAD-binding domain FI878_02155 PF00042 Globin FI878_02160 PF05872 Bacterial protein of unknown function (DUF853) FI878_02165 PF01053 Cys/Met metabolism PLP-dependent enzyme FI878_02170 PF00117 Glutamine amidotransferase class-I FI878_02175 PF00338 Ribosomal protein S10p/S20e FI878_02180 PF00297 Ribosomal protein L3 FI878_02185 PF00573 Ribosomal protein L4/L1 family FI878_02190 PF00276 Ribosomal protein L23 FI878_02195 PF00181 Ribosomal Proteins L2, RNA binding domain FI878_02195 PF03947 Ribosomal Proteins L2, C-terminal domain FI878_02200 PF00203 Ribosomal protein S19 FI878_02205 PF00237 Ribosomal protein L22p/L17e FI878_02210 PF07650 KH domain FI878_02210 PF00189 Ribosomal protein S3, C-terminal domain FI878_02215 PF00252 Ribosomal protein L16p/L10e FI878_02220 PF00831 Ribosomal L29 protein FI878_02225 PF00366 Ribosomal protein S17 FI878_02230 PF00238 Ribosomal protein L14p/L23e FI878_02235 PF00467 KOW motif FI878_02235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FI878_02240 PF00673 ribosomal L5P family C-terminus FI878_02240 PF00281 Ribosomal protein L5 FI878_02245 PF00253 Ribosomal protein S14p/S29e FI878_02250 PF00410 Ribosomal protein S8 FI878_02255 PF00347 Ribosomal protein L6 FI878_02260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FI878_02265 PF00333 Ribosomal protein S5, N-terminal domain FI878_02265 PF03719 Ribosomal protein S5, C-terminal domain FI878_02270 PF00327 Ribosomal protein L30p/L7e FI878_02275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FI878_02280 PF00344 SecY translocase FI878_02285 PF00444 Ribosomal protein L36 FI878_02290 PF00416 Ribosomal protein S13/S18 FI878_02295 PF00411 Ribosomal protein S11 FI878_02300 PF00163 Ribosomal protein S4/S9 N-terminal domain FI878_02300 PF01479 S4 domain FI878_02305 PF01000 RNA polymerase Rpb3/RpoA insert domain FI878_02305 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FI878_02305 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FI878_02310 PF01196 Ribosomal protein L17 FI878_02315 PF00743 Flavin-binding monooxygenase-like FI878_02320 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_02320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_02320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_02325 PF03937 Flavinator of succinate dehydrogenase FI878_02355 PF09526 Probable metal-binding protein (DUF2387) FI878_02360 PF01432 Peptidase family M3 FI878_02365 PF08206 Ribonuclease B OB domain FI878_02365 PF00773 RNB domain FI878_02365 PF08461 Ribonuclease R winged-helix domain FI878_02365 PF17876 Cold shock domain FI878_02365 PF00575 S1 RNA binding domain FI878_02410 PF01557 Fumarylacetoacetate (FAA) hydrolase family FI878_02415 PF12833 Helix-turn-helix domain FI878_02420 PF00892 EamA-like transporter family FI878_02425 PF03631 Virulence factor BrkB FI878_02430 PF03358 NADPH-dependent FMN reductase FI878_02455 PF02130 Uncharacterized protein family UPF0054 FI878_02460 PF02562 PhoH-like protein FI878_02465 PF01938 TRAM domain FI878_02465 PF04055 Radical SAM superfamily FI878_02465 PF00919 Uncharacterized protein family UPF0004 FI878_02470 PF01464 Transglycosylase SLT domain FI878_02470 PF10145 Phage-related minor tail protein FI878_02470 PF01551 Peptidase family M23 FI878_02480 PF00056 lactate/malate dehydrogenase, NAD binding domain FI878_02480 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FI878_02500 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FI878_02505 PF01066 CDP-alcohol phosphatidyltransferase FI878_02550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_02550 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_02550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_02555 PF17932 Tetracyclin repressor-like, C-terminal domain FI878_02555 PF00440 Bacterial regulatory proteins, tetR family FI878_02570 PF01039 Carboxyl transferase domain FI878_02575 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_02575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_02575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_02585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FI878_02585 PF00364 Biotin-requiring enzyme FI878_02585 PF02785 Biotin carboxylase C-terminal domain FI878_02585 PF00289 Biotin carboxylase, N-terminal domain FI878_02595 PF04386 Stringent starvation protein B FI878_02600 PF13417 Glutathione S-transferase, N-terminal domain FI878_02600 PF00043 Glutathione S-transferase, C-terminal domain FI878_02605 PF00380 Ribosomal protein S9/S16 FI878_02610 PF00572 Ribosomal protein L13 FI878_02615 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FI878_02620 PF00398 Ribosomal RNA adenine dimethylase FI878_02625 PF00149 Calcineurin-like phosphoesterase FI878_02645 PF13167 GTP-binding GTPase N-terminal FI878_02645 PF16360 GTP-binding GTPase Middle Region FI878_02645 PF01926 50S ribosome-binding GTPase FI878_02655 PF13091 PLD-like domain FI878_02660 PF00149 Calcineurin-like phosphoesterase FI878_02660 PF10518 TAT (twin-arginine translocation) pathway signal sequence FI878_02665 PF01389 OmpA-like transmembrane domain FI878_02665 PF00691 OmpA family FI878_02670 PF17152 Periplasmic sensor domain FI878_02670 PF00990 Diguanylate cyclase, GGDEF domain FI878_02705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FI878_02705 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_02715 PF04273 Putative phosphatase (DUF442) FI878_02715 PF00753 Metallo-beta-lactamase superfamily FI878_02720 PF00561 alpha/beta hydrolase fold FI878_02725 PF00085 Thioredoxin FI878_02730 PF03061 Thioesterase superfamily FI878_02740 PF04461 Protein of unknown function (DUF520) FI878_02750 PF01266 FAD dependent oxidoreductase FI878_02750 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FI878_02760 PF03795 YCII-related domain FI878_02765 PF04279 Intracellular septation protein A FI878_02770 PF02811 PHP domain FI878_02775 PF01062 Bestrophin, RFP-TM, chloride channel FI878_02780 PF04002 RadC-like JAB domain FI878_02785 PF02441 Flavoprotein FI878_02785 PF04127 DNA / pantothenate metabolism flavoprotein FI878_02790 PF02355 Protein export membrane protein FI878_02790 PF07549 SecD/SecF GG Motif FI878_02795 PF13721 SecD export protein N-terminal TM region FI878_02795 PF07549 SecD/SecF GG Motif FI878_02795 PF02355 Protein export membrane protein FI878_02800 PF02699 Preprotein translocase subunit FI878_02805 PF01702 Queuine tRNA-ribosyltransferase FI878_02820 PF02547 Queuosine biosynthesis protein FI878_02850 PF00512 His Kinase A (phospho-acceptor) domain FI878_02850 PF07689 KaiB domain FI878_02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_02855 PF08335 GlnD PII-uridylyltransferase FI878_02855 PF03710 Glutamate-ammonia ligase adenylyltransferase FI878_02860 PF01063 Amino-transferase class IV FI878_02875 PF01522 Polysaccharide deacetylase FI878_02880 PF00535 Glycosyl transferase family 2 FI878_02885 PF00534 Glycosyl transferases group 1 FI878_02885 PF13439 Glycosyltransferase Family 4 FI878_02910 PF17102 Stealth protein CR3, conserved region 3 FI878_02910 PF11380 Stealth protein CR2, conserved region 2 FI878_02910 PF17101 Stealth protein CR1, conserved region 1 FI878_02915 PF00152 tRNA synthetases class II (D, K and N) FI878_02915 PF02938 GAD domain FI878_02915 PF01336 OB-fold nucleic acid binding domain FI878_02930 PF12762 ISXO2-like transposase domain FI878_02940 PF07715 TonB-dependent Receptor Plug Domain FI878_02940 PF00593 TonB dependent receptor FI878_02960 PF06146 Phosphate-starvation-inducible E FI878_02965 PF00043 Glutathione S-transferase, C-terminal domain FI878_02965 PF02798 Glutathione S-transferase, N-terminal domain FI878_02970 PF03466 LysR substrate binding domain FI878_02970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_02975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_02975 PF12806 Acetyl-CoA dehydrogenase C-terminal like FI878_02975 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_02975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_02980 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_02980 PF12806 Acetyl-CoA dehydrogenase C-terminal like FI878_02980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_02980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_02990 PF00672 HAMP domain FI878_02990 PF00512 His Kinase A (phospho-acceptor) domain FI878_02990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_02995 PF00486 Transcriptional regulatory protein, C terminal FI878_02995 PF00072 Response regulator receiver domain FI878_03000 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FI878_03020 PF01923 Cobalamin adenosyltransferase FI878_03025 PF07715 TonB-dependent Receptor Plug Domain FI878_03025 PF00593 TonB dependent receptor FI878_03030 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FI878_03035 PF00291 Pyridoxal-phosphate dependent enzyme FI878_03060 PF00290 Tryptophan synthase alpha chain FI878_03065 PF01039 Carboxyl transferase domain FI878_03070 PF02875 Mur ligase family, glutamate ligase domain FI878_03070 PF08245 Mur ligase middle domain FI878_03085 PF00753 Metallo-beta-lactamase superfamily FI878_03090 PF10417 C-terminal domain of 1-Cys peroxiredoxin FI878_03090 PF00578 AhpC/TSA family FI878_03095 PF07517 SecA DEAD-like domain FI878_03095 PF02810 SEC-C motif FI878_03095 PF01043 SecA preprotein cross-linking domain FI878_03095 PF07516 SecA Wing and Scaffold domain FI878_03105 PF00083 Sugar (and other) transporter FI878_03105 PF07690 Major Facilitator Superfamily FI878_03110 PF03006 Haemolysin-III related FI878_03135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FI878_03135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FI878_03135 PF00378 Enoyl-CoA hydratase/isomerase FI878_03140 PF00108 Thiolase, N-terminal domain FI878_03140 PF02803 Thiolase, C-terminal domain FI878_03145 PF02311 AraC-like ligand binding domain FI878_03145 PF12833 Helix-turn-helix domain FI878_03150 PF02515 CoA-transferase family III FI878_03155 PF04966 Carbohydrate-selective porin, OprB family FI878_03160 PF01011 PQQ enzyme repeat FI878_03165 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FI878_03165 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FI878_03175 PF00893 Small Multidrug Resistance protein FI878_03185 PF02803 Thiolase, C-terminal domain FI878_03185 PF00108 Thiolase, N-terminal domain FI878_03195 PF00691 OmpA family FI878_03195 PF13505 Outer membrane protein beta-barrel domain FI878_03205 PF01139 tRNA-splicing ligase RtcB FI878_03210 PF00324 Amino acid permease FI878_03215 PF08468 Methyltransferase small domain N-terminal FI878_03215 PF05175 Methyltransferase small domain FI878_03220 PF00860 Permease family FI878_03230 PF01741 Large-conductance mechanosensitive channel, MscL FI878_03245 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FI878_03245 PF06827 Zinc finger found in FPG and IleRS FI878_03245 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FI878_03250 PF02245 Methylpurine-DNA glycosylase (MPG) FI878_03255 PF00593 TonB dependent receptor FI878_03255 PF07715 TonB-dependent Receptor Plug Domain FI878_03260 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_03275 PF13098 Thioredoxin-like domain FI878_03275 PF10411 Disulfide bond isomerase protein N-terminus FI878_03280 PF01571 Aminomethyltransferase folate-binding domain FI878_03290 PF04343 Protein of unknown function, DUF488 FI878_03295 PF03831 PhnA domain FI878_03295 PF08274 PhnA Zinc-Ribbon FI878_03300 PF07411 Domain of unknown function (DUF1508) FI878_03305 PF04073 Aminoacyl-tRNA editing domain FI878_03305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FI878_03305 PF03129 Anticodon binding domain FI878_03310 PF00873 AcrB/AcrD/AcrF family FI878_03325 PF00072 Response regulator receiver domain FI878_03330 PF00072 Response regulator receiver domain FI878_03335 PF01584 CheW-like domain FI878_03340 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FI878_03340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FI878_03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_03345 PF01627 Hpt domain FI878_03345 PF01584 CheW-like domain FI878_03345 PF00072 Response regulator receiver domain FI878_03355 PF07687 Peptidase dimerisation domain FI878_03355 PF01546 Peptidase family M20/M25/M40 FI878_03360 PF08085 Entericidin EcnA/B family FI878_03370 PF04304 Protein of unknown function (DUF454) FI878_03375 PF17969 L,D-transpeptidase C-terminal domain FI878_03375 PF03734 L,D-transpeptidase catalytic domain FI878_03415 PF00175 Oxidoreductase NAD-binding domain FI878_03415 PF00667 FAD binding domain FI878_03415 PF00258 Flavodoxin FI878_03425 PF12805 FUSC-like inner membrane protein yccS FI878_03430 PF07690 Major Facilitator Superfamily FI878_03435 PF00881 Nitroreductase family FI878_03450 PF01235 Sodium:alanine symporter family FI878_03455 PF01734 Patatin-like phospholipase FI878_03460 PF13291 ACT domain FI878_03460 PF00291 Pyridoxal-phosphate dependent enzyme FI878_03465 PF05992 SbmA/BacA-like family FI878_03495 PF02637 GatB domain FI878_03495 PF02934 GatB/GatE catalytic domain FI878_03500 PF01425 Amidase FI878_03505 PF02686 Glu-tRNAGln amidotransferase C subunit FI878_03515 PF04085 rod shape-determining protein MreC FI878_03520 PF04093 rod shape-determining protein MreD FI878_03525 PF02545 Maf-like protein FI878_03530 PF10150 Ribonuclease E/G family FI878_03530 PF00575 S1 RNA binding domain FI878_03540 PF06974 Protein of unknown function (DUF1298) FI878_03540 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FI878_03545 PF01507 Phosphoadenosine phosphosulfate reductase family FI878_03560 PF02525 Flavodoxin-like fold FI878_03580 PF02673 Bacitracin resistance protein BacA FI878_03585 PF06719 AraC-type transcriptional regulator N-terminus FI878_03585 PF12833 Helix-turn-helix domain FI878_03590 PF00698 Acyl transferase domain FI878_03590 PF08240 Alcohol dehydrogenase GroES-like domain FI878_03590 PF08990 Erythronolide synthase docking FI878_03590 PF09277 Erythronolide synthase, docking FI878_03590 PF16197 Ketoacyl-synthetase C-terminal extension FI878_03590 PF00109 Beta-ketoacyl synthase, N-terminal domain FI878_03590 PF14765 Polyketide synthase dehydratase FI878_03590 PF02801 Beta-ketoacyl synthase, C-terminal domain FI878_03590 PF08659 KR domain FI878_03590 PF00550 Phosphopantetheine attachment site FI878_03595 PF01965 DJ-1/PfpI family FI878_03605 PF00324 Amino acid permease FI878_03610 PF04303 PrpF protein FI878_03615 PF00348 Polyprenyl synthetase FI878_03620 PF04237 YjbR FI878_03625 PF01145 SPFH domain / Band 7 family FI878_03635 PF01734 Patatin-like phospholipase FI878_03655 PF08019 Phosphoethanolamine transferase EptA/EptB FI878_03655 PF00884 Sulfatase FI878_03660 PF00486 Transcriptional regulatory protein, C terminal FI878_03660 PF00072 Response regulator receiver domain FI878_03665 PF08521 Two-component sensor kinase N-terminal FI878_03665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_03665 PF00512 His Kinase A (phospho-acceptor) domain FI878_03675 PF00909 Ammonium Transporter Family FI878_03685 PF03466 LysR substrate binding domain FI878_03685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_03705 PF00133 tRNA synthetases class I (I, L, M and V) FI878_03705 PF10458 Valyl tRNA synthetase tRNA binding arm FI878_03705 PF08264 Anticodon-binding domain of tRNA FI878_03725 PF01906 Putative heavy-metal-binding FI878_03730 PF01906 Putative heavy-metal-binding FI878_03735 PF02321 Outer membrane efflux protein FI878_03740 PF00873 AcrB/AcrD/AcrF family FI878_03745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_03745 PF00529 HlyD membrane-fusion protein of T1SS FI878_03750 PF01569 PAP2 superfamily FI878_03760 PF00348 Polyprenyl synthetase FI878_03770 PF00829 Ribosomal prokaryotic L21 protein FI878_03775 PF01016 Ribosomal L27 protein FI878_03780 PF03548 Outer membrane lipoprotein carrier protein LolA FI878_03790 PF02403 Seryl-tRNA synthetase N-terminal domain FI878_03790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FI878_03795 PF14824 Sirohaem biosynthesis protein central FI878_03795 PF10414 Sirohaem synthase dimerisation region FI878_03795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FI878_03800 PF00588 SpoU rRNA Methylase family FI878_03805 PF01638 HxlR-like helix-turn-helix FI878_03810 PF03358 NADPH-dependent FMN reductase FI878_03815 PF13520 Amino acid permease FI878_03820 PF00465 Iron-containing alcohol dehydrogenase FI878_03830 PF03099 Biotin/lipoate A/B protein ligase family FI878_03835 PF04359 Protein of unknown function (DUF493) FI878_03840 PF04542 Sigma-70 region 2 FI878_03840 PF04545 Sigma-70, region 4 FI878_03840 PF04546 Sigma-70, non-essential region FI878_03840 PF03979 Sigma-70 factor, region 1.1 FI878_03840 PF00140 Sigma-70 factor, region 1.2 FI878_03840 PF04539 Sigma-70 region 3 FI878_03870 PF00285 Citrate synthase, C-terminal domain FI878_03875 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FI878_03880 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FI878_03885 PF02910 Fumarate reductase flavoprotein C-term FI878_03885 PF00890 FAD binding domain FI878_03890 PF13085 2Fe-2S iron-sulfur cluster binding domain FI878_03905 PF00676 Dehydrogenase E1 component FI878_03905 PF16870 2-oxoglutarate dehydrogenase C-terminal FI878_03905 PF02779 Transketolase, pyrimidine binding domain FI878_03905 PF16078 2-oxoglutarate dehydrogenase N-terminus FI878_03910 PF02817 e3 binding domain FI878_03910 PF00364 Biotin-requiring enzyme FI878_03910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FI878_03915 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_03915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FI878_03920 PF08442 ATP-grasp domain FI878_03920 PF00549 CoA-ligase FI878_03925 PF00549 CoA-ligase FI878_03925 PF02629 CoA binding domain FI878_03930 PF00579 tRNA synthetases class I (W and Y) FI878_03935 PF05661 Protein of unknown function (DUF808) FI878_03940 PF04228 Putative neutral zinc metallopeptidase FI878_03945 PF00999 Sodium/hydrogen exchanger family FI878_03970 PF09587 Bacterial capsule synthesis protein PGA_cap FI878_03980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FI878_03985 PF00582 Universal stress protein family FI878_03990 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_03995 PF03449 Transcription elongation factor, N-terminal FI878_03995 PF01272 Transcription elongation factor, GreA/GreB, C-term FI878_04000 PF02142 MGS-like domain FI878_04000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FI878_04000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FI878_04005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FI878_04005 PF00117 Glutamine amidotransferase class-I FI878_04020 PF01985 CRS1 / YhbY (CRM) domain FI878_04025 PF01728 FtsJ-like methyltransferase FI878_04030 PF00004 ATPase family associated with various cellular activities (AAA) FI878_04030 PF17862 AAA+ lid domain FI878_04030 PF06480 FtsH Extracellular FI878_04030 PF01434 Peptidase family M41 FI878_04035 PF00809 Pterin binding enzyme FI878_04055 PF16655 PhoD-like phosphatase, N-terminal domain FI878_04055 PF09423 PhoD-like phosphatase FI878_04070 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FI878_04070 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FI878_04085 PF00083 Sugar (and other) transporter FI878_04100 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FI878_04100 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FI878_04105 PF01266 FAD dependent oxidoreductase FI878_04105 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FI878_04110 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain FI878_04110 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain FI878_04115 PF00781 Diacylglycerol kinase catalytic domain FI878_04120 PF00149 Calcineurin-like phosphoesterase FI878_04130 PF00166 Chaperonin 10 Kd subunit FI878_04135 PF00118 TCP-1/cpn60 chaperonin family FI878_04140 PF01219 Prokaryotic diacylglycerol kinase FI878_04145 PF00753 Metallo-beta-lactamase superfamily FI878_04150 PF03009 Glycerophosphoryl diester phosphodiesterase family FI878_04155 PF00873 AcrB/AcrD/AcrF family FI878_04165 PF01435 Peptidase family M48 FI878_04170 PF01464 Transglycosylase SLT domain FI878_04180 PF01171 PP-loop family FI878_04190 PF00497 Bacterial extracellular solute-binding proteins, family 3 FI878_04190 PF01464 Transglycosylase SLT domain FI878_04195 PF01272 Transcription elongation factor, GreA/GreB, C-term FI878_04195 PF03449 Transcription elongation factor, N-terminal FI878_04210 PF00550 Phosphopantetheine attachment site FI878_04210 PF00668 Condensation domain FI878_04210 PF00975 Thioesterase domain FI878_04210 PF13193 AMP-binding enzyme C-terminal domain FI878_04210 PF00501 AMP-binding enzyme FI878_04240 PF00881 Nitroreductase family FI878_04255 PF02595 Glycerate kinase family FI878_04260 PF00384 Molybdopterin oxidoreductase FI878_04265 PF02634 FdhD/NarQ family FI878_04270 PF06803 Protein of unknown function (DUF1232) FI878_04275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FI878_04275 PF11890 Domain of unknown function (DUF3410) FI878_04275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FI878_04280 PF00152 tRNA synthetases class II (D, K and N) FI878_04290 PF18073 Rubredoxin metal binding domain FI878_04295 PF00324 Amino acid permease FI878_04305 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FI878_04305 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FI878_04310 PF01678 Diaminopimelate epimerase FI878_04315 PF01810 LysE type translocator FI878_04320 PF02899 Phage integrase, N-terminal SAM-like domain FI878_04320 PF00589 Phage integrase family FI878_04325 PF12762 ISXO2-like transposase domain FI878_04335 PF01012 Electron transfer flavoprotein domain FI878_04340 PF00766 Electron transfer flavoprotein FAD-binding domain FI878_04340 PF01012 Electron transfer flavoprotein domain FI878_04345 PF00521 DNA gyrase/topoisomerase IV, subunit A FI878_04345 PF03989 DNA gyrase C-terminal domain, beta-propeller FI878_04370 PF00535 Glycosyl transferase family 2 FI878_04390 PF13533 Biotin-lipoyl like FI878_04400 PF00266 Aminotransferase class-V FI878_04410 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FI878_04420 PF12704 MacB-like periplasmic core domain FI878_04420 PF02687 FtsX-like permease family FI878_04425 PF00005 ABC transporter FI878_04430 PF03772 Competence protein FI878_04430 PF00753 Metallo-beta-lactamase superfamily FI878_04430 PF13567 Domain of unknown function (DUF4131) FI878_04440 PF01343 Peptidase family S49 FI878_04440 PF06965 Na+/H+ antiporter 1 FI878_04445 PF12697 Alpha/beta hydrolase family FI878_04450 PF00551 Formyl transferase FI878_04455 PF02769 AIR synthase related protein, C-terminal domain FI878_04455 PF00586 AIR synthase related protein, N-terminal domain FI878_04460 PF01594 AI-2E family transporter FI878_04465 PF00308 Bacterial dnaA protein FI878_04465 PF08299 Bacterial dnaA protein helix-turn-helix FI878_04465 PF11638 DnaA N-terminal domain FI878_04495 PF00588 SpoU rRNA Methylase family FI878_04495 PF08032 RNA 2'-O ribose methyltransferase substrate binding FI878_04500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FI878_04510 PF00691 OmpA family FI878_04515 PF04052 TolB amino-terminal domain FI878_04515 PF07676 WD40-like Beta Propeller Repeat FI878_04525 PF02472 Biopolymer transport protein ExbD/TolR FI878_04530 PF01618 MotA/TolQ/ExbB proton channel family FI878_04535 PF03061 Thioesterase superfamily FI878_04540 PF01546 Peptidase family M20/M25/M40 FI878_04540 PF07687 Peptidase dimerisation domain FI878_04545 PF05496 Holliday junction DNA helicase RuvB P-loop domain FI878_04545 PF05491 RuvB C-terminal winged helix domain FI878_04545 PF17864 RuvB AAA lid domain FI878_04550 PF07499 RuvA, C-terminal domain FI878_04550 PF01330 RuvA N terminal domain FI878_04555 PF01966 HD domain FI878_04560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FI878_04560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FI878_04560 PF02769 AIR synthase related protein, C-terminal domain FI878_04565 PF07690 Major Facilitator Superfamily FI878_04570 PF01784 NIF3 (NGG1p interacting factor 3) FI878_04575 PF00378 Enoyl-CoA hydratase/isomerase FI878_04580 PF01467 Cytidylyltransferase-like FI878_04580 PF00293 NUDIX domain FI878_04590 PF00578 AhpC/TSA family FI878_04605 PF06508 Queuosine biosynthesis protein QueC FI878_04615 PF14602 Hexapeptide repeat of succinyl-transferase FI878_04615 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_04615 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FI878_04625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_04625 PF03466 LysR substrate binding domain FI878_04630 PF00005 ABC transporter FI878_04630 PF12857 TOBE-like domain FI878_04635 PF00528 Binding-protein-dependent transport system inner membrane component FI878_04640 PF00528 Binding-protein-dependent transport system inner membrane component FI878_04655 PF01063 Amino-transferase class IV FI878_04660 PF02618 YceG-like family FI878_04665 PF02223 Thymidylate kinase FI878_04675 PF00890 FAD binding domain FI878_04675 PF02910 Fumarate reductase flavoprotein C-term FI878_04680 PF13180 PDZ domain FI878_04690 PF06421 GTP-binding protein LepA C-terminus FI878_04690 PF00009 Elongation factor Tu GTP binding domain FI878_04690 PF03144 Elongation factor Tu domain 2 FI878_04690 PF00679 Elongation factor G C-terminus FI878_04695 PF10502 Signal peptidase, peptidase S26 FI878_04705 PF14622 Ribonuclease-III-like FI878_04705 PF00035 Double-stranded RNA binding motif FI878_04710 PF01926 50S ribosome-binding GTPase FI878_04710 PF07650 KH domain FI878_04720 PF11967 Recombination protein O N terminal FI878_04720 PF02565 Recombination protein O C terminal FI878_04725 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FI878_04730 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FI878_04735 PF00106 short chain dehydrogenase FI878_04765 PF00155 Aminotransferase class I and II FI878_04775 PF17151 Periplasmic sensor domain FI878_04775 PF00990 Diguanylate cyclase, GGDEF domain FI878_04785 PF17757 UvrB interaction domain FI878_04785 PF00271 Helicase conserved C-terminal domain FI878_04785 PF04851 Type III restriction enzyme, res subunit FI878_04785 PF02151 UvrB/uvrC motif FI878_04785 PF12344 Ultra-violet resistance protein B FI878_04795 PF00892 EamA-like transporter family FI878_04800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FI878_04800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FI878_04815 PF01926 50S ribosome-binding GTPase FI878_04815 PF01018 GTP1/OBG FI878_04820 PF01472 PUA domain FI878_04820 PF00696 Amino acid kinase family FI878_04830 PF07759 Protein of unknown function (DUF1615) FI878_04835 PF01207 Dihydrouridine synthase (Dus) FI878_04840 PF03060 Nitronate monooxygenase FI878_04855 PF02350 UDP-N-acetylglucosamine 2-epimerase FI878_04885 PF00875 DNA photolyase FI878_04885 PF03441 FAD binding domain of DNA photolyase FI878_04890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FI878_04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_04900 PF07943 Penicillin-binding protein 5, C-terminal domain FI878_04900 PF00768 D-alanyl-D-alanine carboxypeptidase FI878_04910 PF03971 Monomeric isocitrate dehydrogenase FI878_04915 PF00849 RNA pseudouridylate synthase FI878_04920 PF00180 Isocitrate/isopropylmalate dehydrogenase FI878_04940 PF06779 Uncharacterised MFS-type transporter YbfB FI878_04945 PF03466 LysR substrate binding domain FI878_04945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_04955 PF02567 Phenazine biosynthesis-like protein FI878_04960 PF05193 Peptidase M16 inactive domain FI878_04960 PF00675 Insulinase (Peptidase family M16) FI878_04985 PF02581 Thiamine monophosphate synthase FI878_04990 PF00202 Aminotransferase class-III FI878_05000 PF00849 RNA pseudouridylate synthase FI878_05005 PF00271 Helicase conserved C-terminal domain FI878_05005 PF18337 RapA N-terminal Tudor like domain FI878_05005 PF12137 RNA polymerase recycling family C-terminal FI878_05005 PF18339 RapA N-terminal Tudor like domain 1 FI878_05005 PF00176 SNF2 family N-terminal domain FI878_05015 PF00440 Bacterial regulatory proteins, tetR family FI878_05020 PF00970 Oxidoreductase FAD-binding domain FI878_05020 PF00175 Oxidoreductase NAD-binding domain FI878_05020 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_05025 PF00487 Fatty acid desaturase FI878_05035 PF17754 MftR C-terminal domain FI878_05035 PF00440 Bacterial regulatory proteins, tetR family FI878_05045 PF00202 Aminotransferase class-III FI878_05050 PF00282 Pyridoxal-dependent decarboxylase conserved domain FI878_05055 PF00171 Aldehyde dehydrogenase family FI878_05060 PF01037 Lrp/AsnC ligand binding domain FI878_05065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FI878_05065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FI878_05065 PF00205 Thiamine pyrophosphate enzyme, central domain FI878_05070 PF00324 Amino acid permease FI878_05075 PF12849 PBP superfamily domain FI878_05080 PF00528 Binding-protein-dependent transport system inner membrane component FI878_05085 PF00528 Binding-protein-dependent transport system inner membrane component FI878_05090 PF00005 ABC transporter FI878_05095 PF01343 Peptidase family S49 FI878_05095 PF08496 Peptidase family S49 N-terminal FI878_05110 PF08328 Adenylosuccinate lyase C-terminal FI878_05110 PF00206 Lyase FI878_05115 PF04356 Protein of unknown function (DUF489) FI878_05125 PF13344 Haloacid dehalogenase-like hydrolase FI878_05125 PF00293 NUDIX domain FI878_05130 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_05140 PF12762 ISXO2-like transposase domain FI878_05145 PF07943 Penicillin-binding protein 5, C-terminal domain FI878_05145 PF00768 D-alanyl-D-alanine carboxypeptidase FI878_05160 PF01975 Survival protein SurE FI878_05165 PF01476 LysM domain FI878_05165 PF01551 Peptidase family M23 FI878_05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_05170 PF03466 LysR substrate binding domain FI878_05175 PF13654 AAA domain FI878_05175 PF05362 Lon protease (S16) C-terminal proteolytic domain FI878_05180 PF07690 Major Facilitator Superfamily FI878_05185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FI878_05190 PF13593 SBF-like CPA transporter family (DUF4137) FI878_05195 PF01197 Ribosomal protein L31 FI878_05210 PF04055 Radical SAM superfamily FI878_05215 PF01132 Elongation factor P (EF-P) OB domain FI878_05215 PF08207 Elongation factor P (EF-P) KOW-like domain FI878_05215 PF09285 Elongation factor P, C-terminal FI878_05220 PF02554 Carbon starvation protein CstA FI878_05220 PF13722 5TM C-terminal transporter carbon starvation CstA FI878_05225 PF04328 Selenoprotein, putative FI878_05235 PF00589 Phage integrase family FI878_05275 PF01381 Helix-turn-helix FI878_05275 PF00717 Peptidase S24-like FI878_05335 PF03354 Phage Terminase FI878_05350 PF12762 ISXO2-like transposase domain FI878_05405 PF01464 Transglycosylase SLT domain FI878_05405 PF00497 Bacterial extracellular solute-binding proteins, family 3 FI878_05500 PF17853 GGDEF-like domain FI878_05500 PF06018 CodY GAF-like domain FI878_05500 PF13556 PucR C-terminal helix-turn-helix domain FI878_05515 PF00171 Aldehyde dehydrogenase family FI878_05520 PF00324 Amino acid permease FI878_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_05525 PF03466 LysR substrate binding domain FI878_05530 PF02028 BCCT, betaine/carnitine/choline family transporter FI878_05535 PF02028 BCCT, betaine/carnitine/choline family transporter FI878_05540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FI878_05540 PF00355 Rieske [2Fe-2S] domain FI878_05545 PF00171 Aldehyde dehydrogenase family FI878_05550 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_05550 PF18113 Rubredoxin binding C-terminal domain FI878_05555 PF01266 FAD dependent oxidoreductase FI878_05555 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FI878_05575 PF00892 EamA-like transporter family FI878_05585 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system FI878_05590 PF00083 Sugar (and other) transporter FI878_05595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FI878_05595 PF13378 Enolase C-terminal domain-like FI878_05600 PF08659 KR domain FI878_05600 PF00550 Phosphopantetheine attachment site FI878_05600 PF00698 Acyl transferase domain FI878_05600 PF08240 Alcohol dehydrogenase GroES-like domain FI878_05600 PF14765 Polyketide synthase dehydratase FI878_05600 PF02801 Beta-ketoacyl synthase, C-terminal domain FI878_05600 PF09277 Erythronolide synthase, docking FI878_05600 PF08990 Erythronolide synthase docking FI878_05600 PF16197 Ketoacyl-synthetase C-terminal extension FI878_05600 PF00109 Beta-ketoacyl synthase, N-terminal domain FI878_05605 PF00440 Bacterial regulatory proteins, tetR family FI878_05625 PF02678 Pirin FI878_05625 PF17954 Quercetinase C-terminal cupin domain FI878_05635 PF13309 HTH domain FI878_05635 PF08348 YheO-like PAS domain FI878_05645 PF00550 Phosphopantetheine attachment site FI878_05645 PF00501 AMP-binding enzyme FI878_05645 PF00668 Condensation domain FI878_05645 PF13193 AMP-binding enzyme C-terminal domain FI878_05650 PF00550 Phosphopantetheine attachment site FI878_05650 PF00975 Thioesterase domain FI878_05650 PF00668 Condensation domain FI878_05650 PF00501 AMP-binding enzyme FI878_05650 PF13193 AMP-binding enzyme C-terminal domain FI878_05655 PF01032 FecCD transport family FI878_05660 PF01032 FecCD transport family FI878_05665 PF00005 ABC transporter FI878_05670 PF01497 Periplasmic binding protein FI878_05675 PF00593 TonB dependent receptor FI878_05675 PF07715 TonB-dependent Receptor Plug Domain FI878_05680 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FI878_05685 PF00668 Condensation domain FI878_05685 PF00550 Phosphopantetheine attachment site FI878_05685 PF00501 AMP-binding enzyme FI878_05690 PF00501 AMP-binding enzyme FI878_05690 PF13193 AMP-binding enzyme C-terminal domain FI878_05695 PF00550 Phosphopantetheine attachment site FI878_05695 PF00857 Isochorismatase family FI878_05700 PF00282 Pyridoxal-dependent decarboxylase conserved domain FI878_05710 PF00664 ABC transporter transmembrane region FI878_05710 PF00005 ABC transporter FI878_05715 PF00664 ABC transporter transmembrane region FI878_05715 PF00005 ABC transporter FI878_05720 PF00975 Thioesterase domain FI878_05730 PF00425 chorismate binding enzyme FI878_05740 PF01208 Uroporphyrinogen decarboxylase (URO-D) FI878_05745 PF05675 Protein of unknown function (DUF817) FI878_05760 PF00144 Beta-lactamase FI878_05775 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_05775 PF01799 [2Fe-2S] binding domain FI878_05780 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FI878_05780 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FI878_05795 PF00218 Indole-3-glycerol phosphate synthase FI878_05800 PF02885 Glycosyl transferase family, helical bundle domain FI878_05800 PF00591 Glycosyl transferase family, a/b domain FI878_05805 PF07715 TonB-dependent Receptor Plug Domain FI878_05805 PF00593 TonB dependent receptor FI878_05810 PF11838 ERAP1-like C-terminal domain FI878_05810 PF01433 Peptidase family M1 domain FI878_05815 PF00117 Glutamine amidotransferase class-I FI878_05920 PF00772 DnaB-like helicase N terminal domain FI878_05920 PF03796 DnaB-like helicase C terminal domain FI878_06105 PF08525 Opacity-associated protein A N-terminal motif FI878_06105 PF01476 LysM domain FI878_06105 PF01551 Peptidase family M23 FI878_06220 PF03951 Glutamine synthetase, beta-Grasp domain FI878_06220 PF00120 Glutamine synthetase, catalytic domain FI878_06225 PF04345 Chorismate lyase FI878_06230 PF01040 UbiA prenyltransferase family FI878_06265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FI878_06265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FI878_06270 PF01784 NIF3 (NGG1p interacting factor 3) FI878_06275 PF13180 PDZ domain FI878_06280 PF12627 Probable RNA and SrmB- binding site of polymerase A FI878_06280 PF01743 Poly A polymerase head domain FI878_06285 PF00390 Malic enzyme, N-terminal domain FI878_06285 PF03949 Malic enzyme, NAD binding domain FI878_06285 PF01515 Phosphate acetyl/butaryl transferase FI878_06290 PF00563 EAL domain FI878_06290 PF03707 Bacterial signalling protein N terminal repeat FI878_06290 PF00990 Diguanylate cyclase, GGDEF domain FI878_06295 PF04452 RNA methyltransferase FI878_06300 PF02219 Methylenetetrahydrofolate reductase FI878_06305 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FI878_06305 PF05221 S-adenosyl-L-homocysteine hydrolase FI878_06320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_06320 PF09317 Domain of unknown function (DUF1974) FI878_06320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_06325 PF04055 Radical SAM superfamily FI878_06330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FI878_06330 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_06340 PF07690 Major Facilitator Superfamily FI878_06350 PF00557 Metallopeptidase family M24 FI878_06355 PF00318 Ribosomal protein S2 FI878_06360 PF00889 Elongation factor TS FI878_06370 PF12833 Helix-turn-helix domain FI878_06390 PF05036 Sporulation related domain FI878_06390 PF03330 Lytic transglycolase FI878_06395 PF13406 Transglycosylase SLT domain FI878_06400 PF01098 Cell cycle protein FI878_06410 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FI878_06410 PF14489 QueF-like protein FI878_06415 PF01061 ABC-2 type transporter FI878_06420 PF00005 ABC transporter FI878_06450 PF00464 Serine hydroxymethyltransferase FI878_06455 PF02321 Outer membrane efflux protein FI878_06460 PF00873 AcrB/AcrD/AcrF family FI878_06465 PF13533 Biotin-lipoyl like FI878_06470 PF03466 LysR substrate binding domain FI878_06470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_06475 PF00497 Bacterial extracellular solute-binding proteins, family 3 FI878_06480 PF00528 Binding-protein-dependent transport system inner membrane component FI878_06485 PF00528 Binding-protein-dependent transport system inner membrane component FI878_06490 PF00005 ABC transporter FI878_06495 PF00893 Small Multidrug Resistance protein FI878_06500 PF00037 4Fe-4S binding domain FI878_06510 PF00392 Bacterial regulatory proteins, gntR family FI878_06510 PF00155 Aminotransferase class I and II FI878_06515 PF02567 Phenazine biosynthesis-like protein FI878_06520 PF00175 Oxidoreductase NAD-binding domain FI878_06520 PF00970 Oxidoreductase FAD-binding domain FI878_06525 PF01980 tRNA-methyltransferase O FI878_06525 PF18389 TrmO C-terminal domain FI878_06535 PF00437 Type II/IV secretion system protein FI878_06545 PF00072 Response regulator receiver domain FI878_06545 PF00486 Transcriptional regulatory protein, C terminal FI878_06550 PF00512 His Kinase A (phospho-acceptor) domain FI878_06550 PF08521 Two-component sensor kinase N-terminal FI878_06550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_06560 PF00293 NUDIX domain FI878_06570 PF14814 Bifunctional transglycosylase second domain FI878_06570 PF00905 Penicillin binding protein transpeptidase domain FI878_06570 PF00912 Transglycosylase FI878_06575 PF01513 ATP-NAD kinase FI878_06580 PF07023 Protein of unknown function (DUF1315) FI878_06585 PF02885 Glycosyl transferase family, helical bundle domain FI878_06585 PF00591 Glycosyl transferase family, a/b domain FI878_06595 PF00375 Sodium:dicarboxylate symporter family FI878_06600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_06600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_06600 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_06605 PF00756 Putative esterase FI878_06610 PF01842 ACT domain FI878_06610 PF01817 Chorismate mutase type II FI878_06610 PF00800 Prephenate dehydratase FI878_06615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FI878_06625 PF01546 Peptidase family M20/M25/M40 FI878_06625 PF07687 Peptidase dimerisation domain FI878_06630 PF12706 Beta-lactamase superfamily domain FI878_06645 PF03883 Peroxide stress protein YaaA FI878_06655 PF05690 Thiazole biosynthesis protein ThiG FI878_06665 PF04241 Protein of unknown function (DUF423) FI878_06670 PF04542 Sigma-70 region 2 FI878_06670 PF04545 Sigma-70, region 4 FI878_06670 PF00140 Sigma-70 factor, region 1.2 FI878_06680 PF00313 'Cold-shock' DNA-binding domain FI878_06685 PF00271 Helicase conserved C-terminal domain FI878_06685 PF00270 DEAD/DEAH box helicase FI878_06695 PF00881 Nitroreductase family FI878_06700 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FI878_06700 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FI878_06720 PF01180 Dihydroorotate dehydrogenase FI878_06725 PF02674 Colicin V production protein FI878_06730 PF00156 Phosphoribosyl transferase domain FI878_06745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FI878_06745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FI878_06750 PF01435 Peptidase family M48 FI878_06755 PF09424 Yqey-like protein FI878_06760 PF01165 Ribosomal protein S21 FI878_06765 PF00814 Glycoprotease family FI878_06785 PF00069 Protein kinase domain FI878_06810 PF03466 LysR substrate binding domain FI878_06810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_06815 PF00202 Aminotransferase class-III FI878_06820 PF00171 Aldehyde dehydrogenase family FI878_06825 PF00324 Amino acid permease FI878_06855 PF04076 Bacterial OB fold (BOF) protein FI878_06935 PF00155 Aminotransferase class I and II FI878_06940 PF06826 Predicted Permease Membrane Region FI878_06940 PF02080 TrkA-C domain FI878_06945 PF12762 ISXO2-like transposase domain FI878_06960 PF04403 Paraquat-inducible protein A FI878_06965 PF02470 MlaD protein FI878_06975 PF01177 Asp/Glu/Hydantoin racemase FI878_06985 PF12762 ISXO2-like transposase domain FI878_06995 PF07995 Glucose / Sorbosone dehydrogenase FI878_07015 PF00375 Sodium:dicarboxylate symporter family FI878_07025 PF16123 Hydroxyacylglutathione hydrolase C-terminus FI878_07025 PF00753 Metallo-beta-lactamase superfamily FI878_07030 PF00528 Binding-protein-dependent transport system inner membrane component FI878_07035 PF09383 NIL domain FI878_07035 PF00005 ABC transporter FI878_07040 PF03180 NLPA lipoprotein FI878_07045 PF02843 Phosphoribosylglycinamide synthetase, C domain FI878_07045 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FI878_07045 PF02844 Phosphoribosylglycinamide synthetase, N domain FI878_07050 PF01808 AICARFT/IMPCHase bienzyme FI878_07050 PF02142 MGS-like domain FI878_07055 PF02954 Bacterial regulatory protein, Fis family FI878_07075 PF01134 Glucose inhibited division protein A FI878_07075 PF13932 GidA associated domain FI878_07085 PF14403 Circularly permuted ATP-grasp type 2 FI878_07095 PF08379 Bacterial transglutaminase-like N-terminal region FI878_07095 PF01841 Transglutaminase-like superfamily FI878_07105 PF01168 Alanine racemase, N-terminal domain FI878_07105 PF00842 Alanine racemase, C-terminal domain FI878_07110 PF00772 DnaB-like helicase N terminal domain FI878_07110 PF03796 DnaB-like helicase C terminal domain FI878_07115 PF01281 Ribosomal protein L9, N-terminal domain FI878_07115 PF03948 Ribosomal protein L9, C-terminal domain FI878_07120 PF01084 Ribosomal protein S18 FI878_07125 PF01250 Ribosomal protein S6 FI878_07130 PF01040 UbiA prenyltransferase family FI878_07135 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FI878_07140 PF00510 Cytochrome c oxidase subunit III FI878_07145 PF00115 Cytochrome C and Quinol oxidase polypeptide I FI878_07150 PF06481 COX Aromatic Rich Motif FI878_07150 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FI878_07160 PF02896 PEP-utilising enzyme, TIM barrel domain FI878_07160 PF00391 PEP-utilising enzyme, mobile domain FI878_07160 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FI878_07165 PF03618 Kinase/pyrophosphorylase FI878_07175 PF01522 Polysaccharide deacetylase FI878_07175 PF14883 Hypothetical glycosyl hydrolase family 13 FI878_07180 PF00535 Glycosyl transferase family 2 FI878_07185 PF13994 PgaD-like protein FI878_07195 PF00296 Luciferase-like monooxygenase FI878_07215 PF03466 LysR substrate binding domain FI878_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_07225 PF00472 RF-1 domain FI878_07225 PF03462 PCRF domain FI878_07230 PF17827 PrmC N-terminal domain FI878_07230 PF13847 Methyltransferase domain FI878_07235 PF00528 Binding-protein-dependent transport system inner membrane component FI878_07240 PF09084 NMT1/THI5 like FI878_07245 PF12833 Helix-turn-helix domain FI878_07250 PF00106 short chain dehydrogenase FI878_07255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_07255 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_07255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_07260 PF00501 AMP-binding enzyme FI878_07260 PF13193 AMP-binding enzyme C-terminal domain FI878_07265 PF01613 Flavin reductase like domain FI878_07270 PF00899 ThiF family FI878_07275 PF03109 ABC1 family FI878_07290 PF03814 Potassium-transporting ATPase A subunit FI878_07300 PF02669 K+-transporting ATPase, c chain FI878_07305 PF13493 Domain of unknown function (DUF4118) FI878_07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_07305 PF00512 His Kinase A (phospho-acceptor) domain FI878_07305 PF02702 Osmosensitive K+ channel His kinase sensor domain FI878_07310 PF00486 Transcriptional regulatory protein, C terminal FI878_07310 PF00072 Response regulator receiver domain FI878_07315 PF00120 Glutamine synthetase, catalytic domain FI878_07325 PF12762 ISXO2-like transposase domain FI878_07340 PF03232 Ubiquinone biosynthesis protein COQ7 FI878_07345 PF07690 Major Facilitator Superfamily FI878_07350 PF07244 Surface antigen variable number repeat FI878_07350 PF17243 POTRA domain TamA domain 1 FI878_07350 PF01103 Surface antigen FI878_07370 PF06434 Aconitate hydratase 2 N-terminus FI878_07370 PF11791 Aconitate B N-terminal domain FI878_07370 PF00330 Aconitase family (aconitate hydratase) FI878_07380 PF00520 Ion transport protein FI878_07380 PF00027 Cyclic nucleotide-binding domain FI878_07385 PF07690 Major Facilitator Superfamily FI878_07400 PF03466 LysR substrate binding domain FI878_07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_07405 PF04284 Protein of unknown function (DUF441) FI878_07420 PF12762 ISXO2-like transposase domain FI878_07425 PF00849 RNA pseudouridylate synthase FI878_07425 PF01479 S4 domain FI878_07440 PF01479 S4 domain FI878_07440 PF00849 RNA pseudouridylate synthase FI878_07445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FI878_07450 PF08676 MutL C terminal dimerisation domain FI878_07450 PF01119 DNA mismatch repair protein, C-terminal domain FI878_07460 PF17209 Hfq protein FI878_07470 PF00881 Nitroreductase family FI878_07480 PF00149 Calcineurin-like phosphoesterase FI878_07485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FI878_07490 PF00749 tRNA synthetases class I (E and Q), catalytic domain FI878_07490 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FI878_07495 PF02540 NAD synthase FI878_07495 PF00117 Glutamine amidotransferase class-I FI878_07495 PF00958 GMP synthase C terminal domain FI878_07500 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FI878_07505 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FI878_07510 PF13520 Amino acid permease FI878_07515 PF00171 Aldehyde dehydrogenase family FI878_07530 PF00465 Iron-containing alcohol dehydrogenase FI878_07535 PF14493 Helix-turn-helix domain FI878_07535 PF05970 PIF1-like helicase FI878_07545 PF06445 GyrI-like small molecule binding domain FI878_07550 PF02110 Hydroxyethylthiazole kinase family FI878_07565 PF11940 Domain of unknown function (DUF3458) Ig-like fold FI878_07565 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FI878_07565 PF01433 Peptidase family M1 domain FI878_07575 PF00106 short chain dehydrogenase FI878_07585 PF01817 Chorismate mutase type II FI878_07590 PF01037 Lrp/AsnC ligand binding domain FI878_07605 PF00440 Bacterial regulatory proteins, tetR family FI878_07610 PF07715 TonB-dependent Receptor Plug Domain FI878_07610 PF00593 TonB dependent receptor FI878_07615 PF00924 Mechanosensitive ion channel FI878_07645 PF07715 TonB-dependent Receptor Plug Domain FI878_07645 PF00593 TonB dependent receptor FI878_07665 PF12848 ABC transporter FI878_07665 PF00005 ABC transporter FI878_07670 PF00582 Universal stress protein family FI878_07685 PF00689 Cation transporting ATPase, C-terminus FI878_07685 PF00690 Cation transporter/ATPase, N-terminus FI878_07690 PF02308 MgtC family FI878_07695 PF03594 Benzoate membrane transport protein FI878_07700 PF01037 Lrp/AsnC ligand binding domain FI878_07705 PF01810 LysE type translocator FI878_07710 PF00923 Transaldolase/Fructose-6-phosphate aldolase FI878_07715 PF03466 LysR substrate binding domain FI878_07715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_07725 PF00108 Thiolase, N-terminal domain FI878_07725 PF02803 Thiolase, C-terminal domain FI878_07740 PF12762 ISXO2-like transposase domain FI878_07760 PF07690 Major Facilitator Superfamily FI878_07765 PF12169 DNA polymerase III subunits gamma and tau domain III FI878_07765 PF12170 DNA polymerase III tau subunit V interacting with alpha FI878_07765 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FI878_07770 PF04185 Phosphoesterase family FI878_07770 PF05506 Domain of unknown function (DUF756) FI878_07775 PF03061 Thioesterase superfamily FI878_07780 PF00465 Iron-containing alcohol dehydrogenase FI878_07790 PF01451 Low molecular weight phosphotyrosine protein phosphatase FI878_07795 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FI878_07795 PF01565 FAD binding domain FI878_07810 PF01645 Conserved region in glutamate synthase FI878_08150 PF12832 MFS_1 like family FI878_08160 PF02785 Biotin carboxylase C-terminal domain FI878_08160 PF00289 Biotin carboxylase, N-terminal domain FI878_08160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FI878_08165 PF00364 Biotin-requiring enzyme FI878_08170 PF01220 Dehydroquinase class II FI878_08175 PF00817 impB/mucB/samB family FI878_08175 PF13438 Domain of unknown function (DUF4113) FI878_08175 PF11799 impB/mucB/samB family C-terminal domain FI878_08185 PF00005 ABC transporter FI878_08190 PF00486 Transcriptional regulatory protein, C terminal FI878_08190 PF00072 Response regulator receiver domain FI878_08200 PF13806 Rieske-like [2Fe-2S] domain FI878_08200 PF04324 BFD-like [2Fe-2S] binding domain FI878_08200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FI878_08200 PF18267 Rubredoxin NAD+ reductase C-terminal domain FI878_08200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FI878_08200 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_08205 PF18267 Rubredoxin NAD+ reductase C-terminal domain FI878_08205 PF04324 BFD-like [2Fe-2S] binding domain FI878_08205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FI878_08205 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_08205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FI878_08210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FI878_08210 PF01568 Molydopterin dinucleotide binding domain FI878_08210 PF04324 BFD-like [2Fe-2S] binding domain FI878_08210 PF00384 Molybdopterin oxidoreductase FI878_08215 PF12804 MobA-like NTP transferase domain FI878_08220 PF01568 Molydopterin dinucleotide binding domain FI878_08220 PF00384 Molybdopterin oxidoreductase FI878_08220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FI878_08225 PF06463 Molybdenum Cofactor Synthesis C FI878_08225 PF04055 Radical SAM superfamily FI878_08235 PF02391 MoaE protein FI878_08240 PF01967 MoaC family FI878_08240 PF00994 Probable molybdopterin binding domain FI878_08245 PF03454 MoeA C-terminal region (domain IV) FI878_08245 PF03453 MoeA N-terminal region (domain I and II) FI878_08245 PF00994 Probable molybdopterin binding domain FI878_08250 PF01638 HxlR-like helix-turn-helix FI878_08255 PF00155 Aminotransferase class I and II FI878_08255 PF00392 Bacterial regulatory proteins, gntR family FI878_08260 PF00892 EamA-like transporter family FI878_08280 PF02635 DsrE/DsrF-like family FI878_08285 PF16363 GDP-mannose 4,6 dehydratase FI878_08290 PF00206 Lyase FI878_08290 PF10415 Fumarase C C-terminus FI878_08315 PF01266 FAD dependent oxidoreductase FI878_08325 PF02542 YgbB family FI878_08335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FI878_08335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FI878_08345 PF12762 ISXO2-like transposase domain FI878_08355 PF02954 Bacterial regulatory protein, Fis family FI878_08355 PF00072 Response regulator receiver domain FI878_08355 PF00158 Sigma-54 interaction domain FI878_08360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_08360 PF00989 PAS fold FI878_08360 PF00512 His Kinase A (phospho-acceptor) domain FI878_08370 PF00919 Uncharacterized protein family UPF0004 FI878_08370 PF18693 TRAM domain FI878_08370 PF04055 Radical SAM superfamily FI878_08375 PF00696 Amino acid kinase family FI878_08380 PF01765 Ribosome recycling factor FI878_08385 PF01255 Putative undecaprenyl diphosphate synthase FI878_08395 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FI878_08395 PF13288 DXP reductoisomerase C-terminal domain FI878_08395 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FI878_08400 PF17820 PDZ domain FI878_08400 PF02163 Peptidase family M50 FI878_08400 PF13180 PDZ domain FI878_08405 PF01103 Surface antigen FI878_08405 PF07244 Surface antigen variable number repeat FI878_08415 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FI878_08415 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_08420 PF07977 FabA-like domain FI878_08425 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_08425 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FI878_08440 PF02631 RecX family FI878_08445 PF00154 recA bacterial DNA recombination protein FI878_08450 PF01479 S4 domain FI878_08455 PF13419 Haloacid dehalogenase-like hydrolase FI878_08480 PF01037 Lrp/AsnC ligand binding domain FI878_08485 PF00266 Aminotransferase class-V FI878_08490 PF00324 Amino acid permease FI878_08500 PF00082 Subtilase family FI878_08500 PF05922 Peptidase inhibitor I9 FI878_08505 PF01740 STAS domain FI878_08505 PF00916 Sulfate permease family FI878_08510 PF02586 SOS response associated peptidase (SRAP) FI878_08515 PF07995 Glucose / Sorbosone dehydrogenase FI878_08525 PF00990 Diguanylate cyclase, GGDEF domain FI878_08525 PF00563 EAL domain FI878_08525 PF03707 Bacterial signalling protein N terminal repeat FI878_08545 PF02378 Phosphotransferase system, EIIC FI878_08545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FI878_08550 PF00294 pfkB family carbohydrate kinase FI878_08555 PF00391 PEP-utilising enzyme, mobile domain FI878_08555 PF02896 PEP-utilising enzyme, TIM barrel domain FI878_08555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FI878_08555 PF00381 PTS HPr component phosphorylation site FI878_08555 PF05524 PEP-utilising enzyme, N-terminal FI878_08580 PF05525 Branched-chain amino acid transport protein FI878_08585 PF00557 Metallopeptidase family M24 FI878_08590 PF03466 LysR substrate binding domain FI878_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_08600 PF00462 Glutaredoxin FI878_08605 PF00202 Aminotransferase class-III FI878_08610 PF00478 IMP dehydrogenase / GMP reductase domain FI878_08610 PF00571 CBS domain FI878_08635 PF00448 SRP54-type protein, GTPase domain FI878_08635 PF02881 SRP54-type protein, helical bundle domain FI878_08645 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FI878_08660 PF08173 Membrane bound YbgT-like protein FI878_08665 PF02322 Cytochrome bd terminal oxidase subunit II FI878_08670 PF01654 Cytochrome bd terminal oxidase subunit I FI878_08685 PF07290 Protein of unknown function (DUF1449) FI878_08695 PF00294 pfkB family carbohydrate kinase FI878_08700 PF07715 TonB-dependent Receptor Plug Domain FI878_08700 PF00593 TonB dependent receptor FI878_08710 PF12762 ISXO2-like transposase domain FI878_08715 PF05193 Peptidase M16 inactive domain FI878_08715 PF00675 Insulinase (Peptidase family M16) FI878_08715 PF08367 Peptidase M16C associated FI878_08720 PF02253 Phospholipase A1 FI878_08725 PF02386 Cation transport protein FI878_08730 PF02254 TrkA-N domain FI878_08730 PF02080 TrkA-C domain FI878_08735 PF00585 C-terminal regulatory domain of Threonine dehydratase FI878_08735 PF00291 Pyridoxal-phosphate dependent enzyme FI878_08740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FI878_08755 PF01118 Semialdehyde dehydrogenase, NAD binding domain FI878_08755 PF02774 Semialdehyde dehydrogenase, dimerisation domain FI878_08765 PF02617 ATP-dependent Clp protease adaptor protein ClpS FI878_08770 PF00004 ATPase family associated with various cellular activities (AAA) FI878_08770 PF17871 AAA lid domain FI878_08770 PF02861 Clp amino terminal domain, pathogenicity island component FI878_08770 PF10431 C-terminal, D2-small domain, of ClpB protein FI878_08770 PF07724 AAA domain (Cdc48 subfamily) FI878_08775 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FI878_08780 PF00793 DAHP synthetase I family FI878_08795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_08795 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_08825 PF06418 CTP synthase N-terminus FI878_08825 PF00117 Glutamine amidotransferase class-I FI878_08830 PF00793 DAHP synthetase I family FI878_08835 PF03952 Enolase, N-terminal domain FI878_08835 PF00113 Enolase, C-terminal TIM barrel domain FI878_08840 PF04239 Protein of unknown function (DUF421) FI878_08845 PF04977 Septum formation initiator FI878_08850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FI878_08855 PF01144 Coenzyme A transferase FI878_08860 PF01144 Coenzyme A transferase FI878_08865 PF02803 Thiolase, C-terminal domain FI878_08865 PF00108 Thiolase, N-terminal domain FI878_08870 PF10397 Adenylosuccinate lyase C-terminus FI878_08870 PF00206 Lyase FI878_08875 PF00561 alpha/beta hydrolase fold FI878_08880 PF07690 Major Facilitator Superfamily FI878_08885 PF02627 Carboxymuconolactone decarboxylase family FI878_08890 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal FI878_08890 PF00775 Dioxygenase FI878_08895 PF00775 Dioxygenase FI878_08900 PF01487 Type I 3-dehydroquinase FI878_08905 PF05048 Periplasmic copper-binding protein (NosD) FI878_08910 PF04966 Carbohydrate-selective porin, OprB family FI878_08915 PF13360 PQQ-like domain FI878_08915 PF01011 PQQ enzyme repeat FI878_08925 PF04143 Sulphur transport FI878_08935 PF00753 Metallo-beta-lactamase superfamily FI878_08940 PF01614 Bacterial transcriptional regulator FI878_08940 PF09339 IclR helix-turn-helix domain FI878_08945 PF03466 LysR substrate binding domain FI878_08945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_08950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_08950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_08950 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_08965 PF00106 short chain dehydrogenase FI878_08975 PF07690 Major Facilitator Superfamily FI878_08985 PF01425 Amidase FI878_08990 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FI878_09005 PF00355 Rieske [2Fe-2S] domain FI878_09005 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FI878_09020 PF00175 Oxidoreductase NAD-binding domain FI878_09020 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_09025 PF01613 Flavin reductase like domain FI878_09030 PF12833 Helix-turn-helix domain FI878_09030 PF02311 AraC-like ligand binding domain FI878_09035 PF01179 Copper amine oxidase, enzyme domain FI878_09035 PF02727 Copper amine oxidase, N2 domain FI878_09035 PF07833 Copper amine oxidase N-terminal domain FI878_09035 PF02728 Copper amine oxidase, N3 domain FI878_09045 PF00171 Aldehyde dehydrogenase family FI878_09050 PF01804 Penicillin amidase FI878_09055 PF12146 Serine aminopeptidase, S33 FI878_09060 PF02803 Thiolase, C-terminal domain FI878_09060 PF00108 Thiolase, N-terminal domain FI878_09065 PF01144 Coenzyme A transferase FI878_09070 PF01144 Coenzyme A transferase FI878_09075 PF00775 Dioxygenase FI878_09075 PF04444 Catechol dioxygenase N terminus FI878_09080 PF02426 Muconolactone delta-isomerase FI878_09085 PF13378 Enolase C-terminal domain-like FI878_09085 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FI878_09090 PF03466 LysR substrate binding domain FI878_09090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_09100 PF00392 Bacterial regulatory proteins, gntR family FI878_09100 PF07729 FCD domain FI878_09105 PF00920 Dehydratase family FI878_09110 PF07690 Major Facilitator Superfamily FI878_09120 PF00171 Aldehyde dehydrogenase family FI878_09140 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_09140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_09140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_09150 PF06506 Propionate catabolism activator FI878_09150 PF02954 Bacterial regulatory protein, Fis family FI878_09150 PF00158 Sigma-54 interaction domain FI878_09155 PF13193 AMP-binding enzyme C-terminal domain FI878_09155 PF00501 AMP-binding enzyme FI878_09160 PF04341 Protein of unknown function, DUF485 FI878_09165 PF00474 Sodium:solute symporter family FI878_09170 PF08240 Alcohol dehydrogenase GroES-like domain FI878_09170 PF00107 Zinc-binding dehydrogenase FI878_09175 PF00171 Aldehyde dehydrogenase family FI878_09185 PF00561 alpha/beta hydrolase fold FI878_09190 PF06628 Catalase-related immune-responsive FI878_09190 PF00199 Catalase FI878_09210 PF07859 alpha/beta hydrolase fold FI878_09215 PF01047 MarR family FI878_09220 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_09220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_09225 PF00106 short chain dehydrogenase FI878_09230 PF01872 RibD C-terminal domain FI878_09235 PF00376 MerR family regulatory protein FI878_09235 PF09278 MerR, DNA binding FI878_09245 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_09255 PF12706 Beta-lactamase superfamily domain FI878_09260 PF00440 Bacterial regulatory proteins, tetR family FI878_09260 PF08359 YsiA-like protein, C-terminal region FI878_09270 PF00857 Isochorismatase family FI878_09275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_09275 PF03466 LysR substrate binding domain FI878_09280 PF07995 Glucose / Sorbosone dehydrogenase FI878_09285 PF02254 TrkA-N domain FI878_09285 PF00999 Sodium/hydrogen exchanger family FI878_09295 PF07687 Peptidase dimerisation domain FI878_09295 PF01546 Peptidase family M20/M25/M40 FI878_09310 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB FI878_09310 PF17287 POTRA domain FI878_09310 PF08479 POTRA domain, ShlB-type FI878_09315 PF13018 Extended Signal Peptide of Type V secretion system FI878_09315 PF04829 Pre-toxin domain with VENN motif FI878_09315 PF13332 Hemagglutinin repeat FI878_09315 PF05860 haemagglutination activity domain FI878_09330 PF07690 Major Facilitator Superfamily FI878_09335 PF04909 Amidohydrolase FI878_09345 PF07702 UTRA domain FI878_09345 PF00392 Bacterial regulatory proteins, gntR family FI878_09350 PF08450 SMP-30/Gluconolactonase/LRE-like region FI878_09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_09360 PF03466 LysR substrate binding domain FI878_09380 PF07690 Major Facilitator Superfamily FI878_09385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FI878_09385 PF01842 ACT domain FI878_09385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FI878_09390 PF03737 Aldolase/RraA FI878_09410 PF00529 HlyD membrane-fusion protein of T1SS FI878_09410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_09425 PF00171 Aldehyde dehydrogenase family FI878_09430 PF00920 Dehydratase family FI878_09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_09440 PF03466 LysR substrate binding domain FI878_09445 PF01370 NAD dependent epimerase/dehydratase family FI878_09450 PF07690 Major Facilitator Superfamily FI878_09455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FI878_09455 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FI878_09460 PF12833 Helix-turn-helix domain FI878_09460 PF06719 AraC-type transcriptional regulator N-terminus FI878_09475 PF00107 Zinc-binding dehydrogenase FI878_09475 PF08240 Alcohol dehydrogenase GroES-like domain FI878_09490 PF00005 ABC transporter FI878_09510 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FI878_09510 PF14572 Phosphoribosyl synthetase-associated domain FI878_09515 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FI878_09590 PF00196 Bacterial regulatory proteins, luxR family FI878_09620 PF01975 Survival protein SurE FI878_09630 PF04607 Region found in RelA / SpoT proteins FI878_09630 PF13291 ACT domain FI878_09630 PF02824 TGS domain FI878_09685 PF12146 Serine aminopeptidase, S33 FI878_09690 PF02311 AraC-like ligand binding domain FI878_09690 PF12833 Helix-turn-helix domain FI878_09700 PF00512 His Kinase A (phospho-acceptor) domain FI878_09700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_09700 PF00672 HAMP domain FI878_09700 PF16527 Two-component sensor protein CpxA, periplasmic domain FI878_09705 PF00486 Transcriptional regulatory protein, C terminal FI878_09705 PF00072 Response regulator receiver domain FI878_09710 PF00529 HlyD membrane-fusion protein of T1SS FI878_09710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_09715 PF00873 AcrB/AcrD/AcrF family FI878_09720 PF02321 Outer membrane efflux protein FI878_09725 PF12146 Serine aminopeptidase, S33 FI878_09730 PF00743 Flavin-binding monooxygenase-like FI878_09735 PF01593 Flavin containing amine oxidoreductase FI878_09750 PF01266 FAD dependent oxidoreductase FI878_09770 PF16970 Type-1 fimbrial protein, A FI878_09780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FI878_09780 PF02753 Pili assembly chaperone PapD, C-terminal domain FI878_09785 PF13953 PapC C-terminal domain FI878_09785 PF13954 PapC N-terminal domain FI878_09785 PF00577 Outer membrane usher protein FI878_09790 PF00419 Fimbrial protein FI878_09810 PF08240 Alcohol dehydrogenase GroES-like domain FI878_09810 PF00107 Zinc-binding dehydrogenase FI878_09820 PF00199 Catalase FI878_09845 PF13091 PLD-like domain FI878_09865 PF01244 Membrane dipeptidase (Peptidase family M19) FI878_09870 PF13186 Iron-sulfur cluster-binding domain FI878_09870 PF04055 Radical SAM superfamily FI878_09875 PF05402 Coenzyme PQQ synthesis protein D (PqqD) FI878_09880 PF03070 TENA/THI-4/PQQC family FI878_09885 PF12706 Beta-lactamase superfamily domain FI878_09890 PF08042 PqqA family FI878_09895 PF17941 Polyphosphate kinase C-terminal domain 1 FI878_09895 PF02503 Polyphosphate kinase middle domain FI878_09895 PF13089 Polyphosphate kinase N-terminal domain FI878_09895 PF13090 Polyphosphate kinase C-terminal domain 2 FI878_09900 PF00149 Calcineurin-like phosphoesterase FI878_09910 PF00857 Isochorismatase family FI878_09910 PF00550 Phosphopantetheine attachment site FI878_09915 PF00106 short chain dehydrogenase FI878_09920 PF00005 ABC transporter FI878_09920 PF03459 TOBE domain FI878_09925 PF00528 Binding-protein-dependent transport system inner membrane component FI878_09935 PF03459 TOBE domain FI878_09935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_09940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FI878_09940 PF00355 Rieske [2Fe-2S] domain FI878_09945 PF00866 Ring hydroxylating beta subunit FI878_09950 PF00175 Oxidoreductase NAD-binding domain FI878_09950 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_09950 PF00970 Oxidoreductase FAD-binding domain FI878_09955 PF14525 AraC-binding-like domain FI878_09955 PF12833 Helix-turn-helix domain FI878_09965 PF01613 Flavin reductase like domain FI878_09980 PF01738 Dienelactone hydrolase family FI878_09985 PF07690 Major Facilitator Superfamily FI878_09990 PF12833 Helix-turn-helix domain FI878_09990 PF06719 AraC-type transcriptional regulator N-terminus FI878_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_10015 PF03466 LysR substrate binding domain FI878_10020 PF01144 Coenzyme A transferase FI878_10025 PF01144 Coenzyme A transferase FI878_10030 PF02667 Short chain fatty acid transporter FI878_10035 PF02803 Thiolase, C-terminal domain FI878_10035 PF00108 Thiolase, N-terminal domain FI878_10040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_10040 PF03466 LysR substrate binding domain FI878_10045 PF03466 LysR substrate binding domain FI878_10045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_10060 PF10415 Fumarase C C-terminus FI878_10060 PF00206 Lyase FI878_10175 PF04233 Phage Mu protein F like protein FI878_10180 PF06074 Protein of unknown function (DUF935) FI878_10195 PF03237 Terminase-like family FI878_10200 PF11985 Protein of unknown function (DUF3486) FI878_10230 PF00717 Peptidase S24-like FI878_10230 PF01381 Helix-turn-helix FI878_10285 PF00216 Bacterial DNA-binding protein FI878_10335 PF12762 ISXO2-like transposase domain FI878_10345 PF00083 Sugar (and other) transporter FI878_10360 PF00005 ABC transporter FI878_10365 PF00528 Binding-protein-dependent transport system inner membrane component FI878_10370 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FI878_10385 PF00392 Bacterial regulatory proteins, gntR family FI878_10385 PF07702 UTRA domain FI878_10395 PF02525 Flavodoxin-like fold FI878_10400 PF01638 HxlR-like helix-turn-helix FI878_10405 PF06445 GyrI-like small molecule binding domain FI878_10405 PF12833 Helix-turn-helix domain FI878_10420 PF01925 Sulfite exporter TauE/SafE FI878_10425 PF04273 Putative phosphatase (DUF442) FI878_10425 PF00753 Metallo-beta-lactamase superfamily FI878_10430 PF00753 Metallo-beta-lactamase superfamily FI878_10430 PF04273 Putative phosphatase (DUF442) FI878_10435 PF00072 Response regulator receiver domain FI878_10435 PF00158 Sigma-54 interaction domain FI878_10435 PF02954 Bacterial regulatory protein, Fis family FI878_10440 PF01062 Bestrophin, RFP-TM, chloride channel FI878_10445 PF00107 Zinc-binding dehydrogenase FI878_10445 PF08240 Alcohol dehydrogenase GroES-like domain FI878_10450 PF00106 short chain dehydrogenase FI878_10455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FI878_10455 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_10460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FI878_10460 PF00364 Biotin-requiring enzyme FI878_10460 PF02817 e3 binding domain FI878_10465 PF02779 Transketolase, pyrimidine binding domain FI878_10465 PF02780 Transketolase, C-terminal domain FI878_10470 PF00676 Dehydrogenase E1 component FI878_10475 PF04055 Radical SAM superfamily FI878_10490 PF00990 Diguanylate cyclase, GGDEF domain FI878_10490 PF08448 PAS fold FI878_10495 PF01264 Chorismate synthase FI878_10500 PF05175 Methyltransferase small domain FI878_10505 PF00291 Pyridoxal-phosphate dependent enzyme FI878_10515 PF01434 Peptidase family M41 FI878_10515 PF17862 AAA+ lid domain FI878_10515 PF00004 ATPase family associated with various cellular activities (AAA) FI878_10525 PF05166 YcgL domain FI878_10545 PF01612 3'-5' exonuclease FI878_10545 PF00570 HRDC domain FI878_10550 PF02132 RecR protein FI878_10550 PF13662 Toprim domain FI878_10555 PF02575 YbaB/EbfC DNA-binding family FI878_10565 PF01053 Cys/Met metabolism PLP-dependent enzyme FI878_10570 PF00561 alpha/beta hydrolase fold FI878_10575 PF08241 Methyltransferase domain FI878_10605 PF01230 HIT domain FI878_10640 PF00005 ABC transporter FI878_10645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_10655 PF02684 Lipid-A-disaccharide synthetase FI878_10660 PF00593 TonB dependent receptor FI878_10660 PF07715 TonB-dependent Receptor Plug Domain FI878_10680 PF01925 Sulfite exporter TauE/SafE FI878_10685 PF00793 DAHP synthetase I family FI878_10690 PF02654 Cobalamin-5-phosphate synthase FI878_10705 PF02277 Phosphoribosyltransferase FI878_10710 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FI878_10750 PF07715 TonB-dependent Receptor Plug Domain FI878_10750 PF00593 TonB dependent receptor FI878_10765 PF04183 IucA / IucC family FI878_10765 PF06276 Ferric iron reductase FhuF-like transporter FI878_10770 PF04183 IucA / IucC family FI878_10770 PF06276 Ferric iron reductase FhuF-like transporter FI878_10775 PF07690 Major Facilitator Superfamily FI878_10780 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) FI878_10785 PF06276 Ferric iron reductase FhuF-like transporter FI878_10785 PF04183 IucA / IucC family FI878_10790 PF04073 Aminoacyl-tRNA editing domain FI878_10800 PF03109 ABC1 family FI878_10805 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_10805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_10805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_10810 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_10810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_10810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_10815 PF00487 Fatty acid desaturase FI878_10820 PF12833 Helix-turn-helix domain FI878_10820 PF12852 Cupin FI878_10825 PF00639 PPIC-type PPIASE domain FI878_10825 PF09312 SurA N-terminal domain FI878_10830 PF00216 Bacterial DNA-binding protein FI878_10845 PF02082 Transcriptional regulator FI878_10850 PF00266 Aminotransferase class-V FI878_10855 PF01592 NifU-like N terminal domain FI878_10860 PF01521 Iron-sulphur cluster biosynthesis FI878_10865 PF00226 DnaJ domain FI878_10865 PF07743 HSCB C-terminal oligomerisation domain FI878_10870 PF00012 Hsp70 protein FI878_10875 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_10880 PF00211 Adenylate and Guanylate cyclase catalytic domain FI878_10890 PF17757 UvrB interaction domain FI878_10890 PF00270 DEAD/DEAH box helicase FI878_10890 PF00271 Helicase conserved C-terminal domain FI878_10890 PF03461 TRCF domain FI878_10890 PF02559 CarD-like/TRCF domain FI878_10910 PF03737 Aldolase/RraA FI878_10915 PF13460 NAD(P)H-binding FI878_10920 PF01649 Ribosomal protein S20 FI878_10930 PF00459 Inositol monophosphatase family FI878_10945 PF00005 ABC transporter FI878_10945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FI878_10950 PF00528 Binding-protein-dependent transport system inner membrane component FI878_10955 PF00528 Binding-protein-dependent transport system inner membrane component FI878_10960 PF01432 Peptidase family M3 FI878_10980 PF07715 TonB-dependent Receptor Plug Domain FI878_10980 PF00593 TonB dependent receptor FI878_10990 PF01618 MotA/TolQ/ExbB proton channel family FI878_10995 PF02472 Biopolymer transport protein ExbD/TolR FI878_11000 PF02472 Biopolymer transport protein ExbD/TolR FI878_11010 PF01274 Malate synthase FI878_11080 PF01464 Transglycosylase SLT domain FI878_11080 PF01551 Peptidase family M23 FI878_11080 PF10145 Phage-related minor tail protein FI878_11135 PF04860 Phage portal protein FI878_11215 PF03796 DnaB-like helicase C terminal domain FI878_11215 PF00772 DnaB-like helicase N terminal domain FI878_11285 PF00589 Phage integrase family FI878_11285 PF02899 Phage integrase, N-terminal SAM-like domain FI878_11290 PF03969 AFG1-like ATPase FI878_11300 PF00743 Flavin-binding monooxygenase-like FI878_11310 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FI878_11320 PF00216 Bacterial DNA-binding protein FI878_11325 PF00575 S1 RNA binding domain FI878_11330 PF02224 Cytidylate kinase FI878_11340 PF14437 MafB19-like deaminase FI878_11350 PF03167 Uracil DNA glycosylase superfamily FI878_11360 PF03934 Type II secretion system (T2SS), protein K FI878_11365 PF07963 Prokaryotic N-terminal methylation motif FI878_11365 PF11612 Type II secretion system (T2SS), protein J FI878_11370 PF02501 Type II secretion system (T2SS), protein I FI878_11370 PF07963 Prokaryotic N-terminal methylation motif FI878_11385 PF01026 TatD related DNase FI878_11395 PF09115 DNA polymerase III, delta subunit, C terminal FI878_11400 PF02348 Cytidylyltransferase FI878_11405 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FI878_11410 PF00005 ABC transporter FI878_11410 PF00664 ABC transporter transmembrane region FI878_11420 PF01618 MotA/TolQ/ExbB proton channel family FI878_11425 PF02195 ParB-like nuclease domain FI878_11425 PF17762 HTH domain found in ParB protein FI878_11430 PF13614 AAA domain FI878_11435 PF02527 rRNA small subunit methyltransferase G FI878_11440 PF00483 Nucleotidyl transferase FI878_11445 PF01636 Phosphotransferase enzyme family FI878_11450 PF03968 OstA-like protein FI878_11450 PF04453 LPS transport system D FI878_11455 PF00639 PPIC-type PPIASE domain FI878_11455 PF09312 SurA N-terminal domain FI878_11460 PF01116 Fructose-bisphosphate aldolase class-II FI878_11470 PF00162 Phosphoglycerate kinase FI878_11480 PF02545 Maf-like protein FI878_11485 PF08007 Cupin superfamily protein FI878_11500 PF00375 Sodium:dicarboxylate symporter family FI878_11505 PF06912 Protein of unknown function (DUF1275) FI878_11510 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FI878_11520 PF12762 ISXO2-like transposase domain FI878_11525 PF00005 ABC transporter FI878_11525 PF00664 ABC transporter transmembrane region FI878_11535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FI878_11535 PF12833 Helix-turn-helix domain FI878_11540 PF01597 Glycine cleavage H-protein FI878_11545 PF02146 Sir2 family FI878_11550 PF00474 Sodium:solute symporter family FI878_11555 PF01037 Lrp/AsnC ligand binding domain FI878_11560 PF00171 Aldehyde dehydrogenase family FI878_11560 PF01619 Proline dehydrogenase FI878_11560 PF14850 DNA-binding domain of Proline dehydrogenase FI878_11560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FI878_11565 PF04229 GrpB protein FI878_11570 PF05958 tRNA (Uracil-5-)-methyltransferase FI878_11580 PF09992 Phosphodiester glycosidase FI878_11590 PF04264 YceI-like domain FI878_11600 PF02779 Transketolase, pyrimidine binding domain FI878_11600 PF02780 Transketolase, C-terminal domain FI878_11600 PF00456 Transketolase, thiamine diphosphate binding domain FI878_11605 PF00438 S-adenosylmethionine synthetase, N-terminal domain FI878_11605 PF02773 S-adenosylmethionine synthetase, C-terminal domain FI878_11605 PF02772 S-adenosylmethionine synthetase, central domain FI878_11625 PF00905 Penicillin binding protein transpeptidase domain FI878_11640 PF02075 Crossover junction endodeoxyribonuclease RuvC FI878_11645 PF01256 Carbohydrate kinase FI878_11645 PF03853 YjeF-related protein N-terminus FI878_11650 PF08331 Domain of unknown function (DUF1730) FI878_11655 PF04055 Radical SAM superfamily FI878_11655 PF06968 Biotin and Thiamin Synthesis associated domain FI878_11670 PF16970 Type-1 fimbrial protein, A FI878_11675 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FI878_11675 PF02753 Pili assembly chaperone PapD, C-terminal domain FI878_11680 PF13953 PapC C-terminal domain FI878_11680 PF00577 Outer membrane usher protein FI878_11680 PF13954 PapC N-terminal domain FI878_11705 PF00892 EamA-like transporter family FI878_11715 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FI878_11725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_11725 PF03466 LysR substrate binding domain FI878_11745 PF00440 Bacterial regulatory proteins, tetR family FI878_11755 PF01709 Transcriptional regulator FI878_11760 PF01037 Lrp/AsnC ligand binding domain FI878_11770 PF00005 ABC transporter FI878_11775 PF00528 Binding-protein-dependent transport system inner membrane component FI878_11780 PF00528 Binding-protein-dependent transport system inner membrane component FI878_11795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_11795 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FI878_11805 PF00296 Luciferase-like monooxygenase FI878_11810 PF03180 NLPA lipoprotein FI878_11815 PF03180 NLPA lipoprotein FI878_11820 PF09383 NIL domain FI878_11820 PF00005 ABC transporter FI878_11825 PF00528 Binding-protein-dependent transport system inner membrane component FI878_11830 PF01926 50S ribosome-binding GTPase FI878_11830 PF06071 Protein of unknown function (DUF933) FI878_11855 PF03591 AzlC protein FI878_11860 PF05437 Branched-chain amino acid transport protein (AzlD) FI878_11870 PF02222 ATP-grasp domain FI878_11875 PF08335 GlnD PII-uridylyltransferase FI878_11875 PF01966 HD domain FI878_11875 PF01909 Nucleotidyltransferase domain FI878_11880 PF00155 Aminotransferase class I and II FI878_11890 PF12833 Helix-turn-helix domain FI878_11890 PF12852 Cupin FI878_11895 PF00255 Glutathione peroxidase FI878_11900 PF01641 SelR domain FI878_11905 PF00155 Aminotransferase class I and II FI878_11910 PF00375 Sodium:dicarboxylate symporter family FI878_11915 PF17763 Glutaminase/Asparaginase C-terminal domain FI878_11915 PF00710 Asparaginase, N-terminal FI878_11920 PF07733 Bacterial DNA polymerase III alpha NTPase domain FI878_11920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FI878_11920 PF14579 Helix-hairpin-helix motif FI878_11920 PF02811 PHP domain FI878_11920 PF01336 OB-fold nucleic acid binding domain FI878_11925 PF00588 SpoU rRNA Methylase family FI878_11930 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_11945 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_11945 PF13192 Thioredoxin domain FI878_11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_11960 PF03466 LysR substrate binding domain FI878_11965 PF01758 Sodium Bile acid symporter family FI878_11970 PF01022 Bacterial regulatory protein, arsR family FI878_11975 PF03960 ArsC family FI878_11985 PF01979 Amidohydrolase family FI878_11985 PF13382 Adenine deaminase C-terminal domain FI878_11995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_11995 PF03466 LysR substrate binding domain FI878_12005 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FI878_12010 PF01177 Asp/Glu/Hydantoin racemase FI878_12015 PF02668 Taurine catabolism dioxygenase TauD, TfdA family FI878_12020 PF00528 Binding-protein-dependent transport system inner membrane component FI878_12025 PF00005 ABC transporter FI878_12030 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FI878_12040 PF00083 Sugar (and other) transporter FI878_12045 PF00296 Luciferase-like monooxygenase FI878_12050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FI878_12050 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_12050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_12065 PF01654 Cytochrome bd terminal oxidase subunit I FI878_12070 PF02322 Cytochrome bd terminal oxidase subunit II FI878_12080 PF00392 Bacterial regulatory proteins, gntR family FI878_12080 PF00155 Aminotransferase class I and II FI878_12085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12085 PF03466 LysR substrate binding domain FI878_12105 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG FI878_12115 PF01039 Carboxyl transferase domain FI878_12120 PF06857 Malonate decarboxylase delta subunit (MdcD) FI878_12125 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase FI878_12130 PF16957 Malonate decarboxylase, alpha subunit, transporter FI878_12135 PF07690 Major Facilitator Superfamily FI878_12150 PF00392 Bacterial regulatory proteins, gntR family FI878_12150 PF00155 Aminotransferase class I and II FI878_12155 PF04172 LrgB-like family FI878_12160 PF03788 LrgA family FI878_12165 PF03466 LysR substrate binding domain FI878_12165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12170 PF14834 Glutathione S-transferase, C-terminal domain FI878_12170 PF02798 Glutathione S-transferase, N-terminal domain FI878_12175 PF02798 Glutathione S-transferase, N-terminal domain FI878_12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12180 PF03466 LysR substrate binding domain FI878_12190 PF00581 Rhodanese-like domain FI878_12195 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_12205 PF00266 Aminotransferase class-V FI878_12215 PF01810 LysE type translocator FI878_12220 PF03466 LysR substrate binding domain FI878_12220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12230 PF00497 Bacterial extracellular solute-binding proteins, family 3 FI878_12235 PF00497 Bacterial extracellular solute-binding proteins, family 3 FI878_12240 PF00005 ABC transporter FI878_12245 PF00528 Binding-protein-dependent transport system inner membrane component FI878_12250 PF00528 Binding-protein-dependent transport system inner membrane component FI878_12265 PF00072 Response regulator receiver domain FI878_12270 PF00512 His Kinase A (phospho-acceptor) domain FI878_12270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_12270 PF09308 LuxQ, periplasmic FI878_12270 PF00072 Response regulator receiver domain FI878_12280 PF13404 AsnC-type helix-turn-helix domain FI878_12280 PF01037 Lrp/AsnC ligand binding domain FI878_12290 PF00717 Peptidase S24-like FI878_12315 PF18011 C-terminal domain found in long catalases FI878_12315 PF06628 Catalase-related immune-responsive FI878_12315 PF00199 Catalase FI878_12325 PF00994 Probable molybdopterin binding domain FI878_12325 PF18146 Damage-inducible protein CinA KH domain FI878_12325 PF02464 Competence-damaged protein FI878_12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12355 PF03466 LysR substrate binding domain FI878_12375 PF00501 AMP-binding enzyme FI878_12375 PF13193 AMP-binding enzyme C-terminal domain FI878_12380 PF00440 Bacterial regulatory proteins, tetR family FI878_12385 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_12385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_12385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_12390 PF01039 Carboxyl transferase domain FI878_12395 PF00378 Enoyl-CoA hydratase/isomerase FI878_12400 PF18140 Propionyl-coenzyme A carboxylase BT domain FI878_12400 PF02785 Biotin carboxylase C-terminal domain FI878_12400 PF00364 Biotin-requiring enzyme FI878_12400 PF00289 Biotin carboxylase, N-terminal domain FI878_12400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FI878_12405 PF00682 HMGL-like FI878_12410 PF03466 LysR substrate binding domain FI878_12410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12425 PF12806 Acetyl-CoA dehydrogenase C-terminal like FI878_12425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_12425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_12425 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_12435 PF07690 Major Facilitator Superfamily FI878_12445 PF01144 Coenzyme A transferase FI878_12450 PF01144 Coenzyme A transferase FI878_12455 PF07690 Major Facilitator Superfamily FI878_12460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_12460 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_12460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_12465 PF00378 Enoyl-CoA hydratase/isomerase FI878_12475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FI878_12475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FI878_12475 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FI878_12480 PF02803 Thiolase, C-terminal domain FI878_12480 PF00108 Thiolase, N-terminal domain FI878_12485 PF09339 IclR helix-turn-helix domain FI878_12490 PF07690 Major Facilitator Superfamily FI878_12495 PF03060 Nitronate monooxygenase FI878_12500 PF00378 Enoyl-CoA hydratase/isomerase FI878_12505 PF09339 IclR helix-turn-helix domain FI878_12510 PF02515 CoA-transferase family III FI878_12515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_12515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_12515 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_12520 PF07690 Major Facilitator Superfamily FI878_12525 PF13419 Haloacid dehalogenase-like hydrolase FI878_12530 PF00266 Aminotransferase class-V FI878_12535 PF01266 FAD dependent oxidoreductase FI878_12540 PF00528 Binding-protein-dependent transport system inner membrane component FI878_12545 PF00005 ABC transporter FI878_12545 PF08402 TOBE domain FI878_12555 PF00392 Bacterial regulatory proteins, gntR family FI878_12555 PF07702 UTRA domain FI878_12560 PF01494 FAD binding domain FI878_12565 PF01614 Bacterial transcriptional regulator FI878_12565 PF09339 IclR helix-turn-helix domain FI878_12570 PF02525 Flavodoxin-like fold FI878_12575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12575 PF03466 LysR substrate binding domain FI878_12580 PF02627 Carboxymuconolactone decarboxylase family FI878_12585 PF00171 Aldehyde dehydrogenase family FI878_12595 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FI878_12605 PF00171 Aldehyde dehydrogenase family FI878_12610 PF00296 Luciferase-like monooxygenase FI878_12615 PF01613 Flavin reductase like domain FI878_12620 PF12697 Alpha/beta hydrolase family FI878_12640 PF01292 Prokaryotic cytochrome b561 FI878_12645 PF00199 Catalase FI878_12685 PF03061 Thioesterase superfamily FI878_12690 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_12695 PF08223 PaaX-like protein C-terminal domain FI878_12695 PF07848 PaaX-like protein FI878_12700 PF00501 AMP-binding enzyme FI878_12700 PF14535 AMP-binding enzyme C-terminal domain FI878_12705 PF02803 Thiolase, C-terminal domain FI878_12705 PF00108 Thiolase, N-terminal domain FI878_12710 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain FI878_12710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FI878_12710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FI878_12715 PF00378 Enoyl-CoA hydratase/isomerase FI878_12720 PF00378 Enoyl-CoA hydratase/isomerase FI878_12725 PF00970 Oxidoreductase FAD-binding domain FI878_12725 PF00175 Oxidoreductase NAD-binding domain FI878_12725 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_12730 PF01883 Iron-sulfur cluster assembly protein FI878_12735 PF05138 Phenylacetic acid catabolic protein FI878_12740 PF06243 Phenylacetic acid degradation B FI878_12745 PF05138 Phenylacetic acid catabolic protein FI878_12750 PF01575 MaoC like domain FI878_12750 PF00171 Aldehyde dehydrogenase family FI878_12755 PF03313 Serine dehydratase alpha chain FI878_12755 PF03315 Serine dehydratase beta chain FI878_12760 PF13520 Amino acid permease FI878_12765 PF00171 Aldehyde dehydrogenase family FI878_12770 PF00083 Sugar (and other) transporter FI878_12780 PF04324 BFD-like [2Fe-2S] binding domain FI878_12780 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_12790 PF01266 FAD dependent oxidoreductase FI878_12795 PF05544 Proline racemase FI878_12800 PF00392 Bacterial regulatory proteins, gntR family FI878_12810 PF00701 Dihydrodipicolinate synthetase family FI878_12825 PF00376 MerR family regulatory protein FI878_12825 PF09278 MerR, DNA binding FI878_12855 PF00654 Voltage gated chloride channel FI878_12860 PF00364 Biotin-requiring enzyme FI878_12860 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FI878_12860 PF00289 Biotin carboxylase, N-terminal domain FI878_12860 PF02785 Biotin carboxylase C-terminal domain FI878_12870 PF07286 Protein of unknown function (DUF1445) FI878_12875 PF03746 LamB/YcsF family FI878_12880 PF01566 Natural resistance-associated macrophage protein FI878_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_12885 PF03466 LysR substrate binding domain FI878_12900 PF14220 Domain of unknown function (DUF4329) FI878_12900 PF05593 RHS Repeat FI878_12900 PF03527 RHS protein FI878_12905 PF04717 Type VI secretion system, phage-baseplate injector FI878_12905 PF16671 Actin cross-linking domain FI878_12920 PF13419 Haloacid dehalogenase-like hydrolase FI878_12940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FI878_12940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FI878_12960 PF07690 Major Facilitator Superfamily FI878_12975 PF03279 Bacterial lipid A biosynthesis acyltransferase FI878_12980 PF00990 Diguanylate cyclase, GGDEF domain FI878_12980 PF03707 Bacterial signalling protein N terminal repeat FI878_12980 PF00563 EAL domain FI878_12985 PF00892 EamA-like transporter family FI878_12990 PF01037 Lrp/AsnC ligand binding domain FI878_12995 PF00488 MutS domain V FI878_12995 PF05190 MutS family domain IV FI878_12995 PF05192 MutS domain III FI878_12995 PF05188 MutS domain II FI878_12995 PF01624 MutS domain I FI878_13005 PF11953 Domain of unknown function (DUF3470) FI878_13005 PF00037 4Fe-4S binding domain FI878_13015 PF01596 O-methyltransferase FI878_13025 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_13030 PF01205 Uncharacterized protein family UPF0029 FI878_13040 PF00664 ABC transporter transmembrane region FI878_13040 PF00005 ABC transporter FI878_13040 PF03412 Peptidase C39 family FI878_13045 PF02321 Outer membrane efflux protein FI878_13050 PF12399 Branched-chain amino acid ATP-binding cassette transporter FI878_13050 PF00005 ABC transporter FI878_13055 PF03968 OstA-like protein FI878_13070 PF00571 CBS domain FI878_13070 PF01380 SIS domain FI878_13075 PF09190 DALR domain FI878_13075 PF01406 tRNA synthetases class I (C) catalytic domain FI878_13105 PF01638 HxlR-like helix-turn-helix FI878_13110 PF07690 Major Facilitator Superfamily FI878_13140 PF14748 Pyrroline-5-carboxylate reductase dimerisation FI878_13140 PF03807 NADP oxidoreductase coenzyme F420-dependent FI878_13145 PF12762 ISXO2-like transposase domain FI878_13160 PF00313 'Cold-shock' DNA-binding domain FI878_13165 PF01810 LysE type translocator FI878_13200 PF02601 Exonuclease VII, large subunit FI878_13200 PF13742 OB-fold nucleic acid binding domain FI878_13240 PF00376 MerR family regulatory protein FI878_13240 PF09278 MerR, DNA binding FI878_13245 PF00403 Heavy-metal-associated domain FI878_13255 PF03466 LysR substrate binding domain FI878_13255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_13260 PF00355 Rieske [2Fe-2S] domain FI878_13260 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FI878_13265 PF00866 Ring hydroxylating beta subunit FI878_13270 PF00175 Oxidoreductase NAD-binding domain FI878_13270 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_13270 PF00970 Oxidoreductase FAD-binding domain FI878_13275 PF00106 short chain dehydrogenase FI878_13280 PF03594 Benzoate membrane transport protein FI878_13285 PF07690 Major Facilitator Superfamily FI878_13295 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FI878_13295 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FI878_13300 PF00270 DEAD/DEAH box helicase FI878_13300 PF11898 Domain of unknown function (DUF3418) FI878_13300 PF04408 Helicase associated domain (HA2) FI878_13300 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FI878_13300 PF00271 Helicase conserved C-terminal domain FI878_13305 PF10417 C-terminal domain of 1-Cys peroxiredoxin FI878_13305 PF00578 AhpC/TSA family FI878_13325 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_13325 PF13192 Thioredoxin domain FI878_13335 PF00043 Glutathione S-transferase, C-terminal domain FI878_13335 PF02798 Glutathione S-transferase, N-terminal domain FI878_13345 PF02390 Putative methyltransferase FI878_13350 PF13417 Glutathione S-transferase, N-terminal domain FI878_13350 PF00043 Glutathione S-transferase, C-terminal domain FI878_13360 PF00691 OmpA family FI878_13360 PF13488 Glycine zipper FI878_13365 PF01979 Amidohydrolase family FI878_13370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FI878_13370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FI878_13380 PF10672 S-adenosylmethionine-dependent methyltransferase FI878_13380 PF02926 THUMP domain FI878_13380 PF01170 Putative RNA methylase family UPF0020 FI878_13395 PF17871 AAA lid domain FI878_13395 PF00004 ATPase family associated with various cellular activities (AAA) FI878_13395 PF02861 Clp amino terminal domain, pathogenicity island component FI878_13395 PF10431 C-terminal, D2-small domain, of ClpB protein FI878_13395 PF07724 AAA domain (Cdc48 subfamily) FI878_13410 PF02566 OsmC-like protein FI878_13415 PF13545 Crp-like helix-turn-helix domain FI878_13415 PF00027 Cyclic nucleotide-binding domain FI878_13425 PF00248 Aldo/keto reductase family FI878_13440 PF00709 Adenylosuccinate synthetase FI878_13445 PF13393 Histidyl-tRNA synthetase FI878_13450 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FI878_13450 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FI878_13455 PF02272 DHHA1 domain FI878_13455 PF01411 tRNA synthetases class II (A) FI878_13455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FI878_13460 PF01842 ACT domain FI878_13460 PF13840 ACT domain FI878_13460 PF00696 Amino acid kinase family FI878_13465 PF02599 Global regulator protein family FI878_13470 PF01351 Ribonuclease HII FI878_13480 PF01292 Prokaryotic cytochrome b561 FI878_13485 PF00962 Adenosine/AMP deaminase FI878_13490 PF00860 Permease family FI878_13500 PF00743 Flavin-binding monooxygenase-like FI878_13505 PF00106 short chain dehydrogenase FI878_13515 PF17954 Quercetinase C-terminal cupin domain FI878_13515 PF02678 Pirin FI878_13520 PF00440 Bacterial regulatory proteins, tetR family FI878_13520 PF17932 Tetracyclin repressor-like, C-terminal domain FI878_13530 PF00106 short chain dehydrogenase FI878_13540 PF13610 DDE domain FI878_13555 PF00583 Acetyltransferase (GNAT) family FI878_13565 PF13610 DDE domain FI878_13575 PF02796 Helix-turn-helix domain of resolvase FI878_13575 PF00239 Resolvase, N terminal domain FI878_13590 PF13610 DDE domain FI878_13600 PF00583 Acetyltransferase (GNAT) family FI878_13605 PF00589 Phage integrase family FI878_13605 PF13495 Phage integrase, N-terminal SAM-like domain FI878_13610 PF13610 DDE domain FI878_13625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_13625 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_13630 PF00764 Arginosuccinate synthase FI878_13635 PF00990 Diguanylate cyclase, GGDEF domain FI878_13635 PF00563 EAL domain FI878_13635 PF00360 Phytochrome region FI878_13635 PF01590 GAF domain FI878_13640 PF01979 Amidohydrolase family FI878_13645 PF00929 Exonuclease FI878_13655 PF07715 TonB-dependent Receptor Plug Domain FI878_13655 PF00593 TonB dependent receptor FI878_13660 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_13660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_13665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FI878_13665 PF00005 ABC transporter FI878_13670 PF12911 N-terminal TM domain of oligopeptide transport permease C FI878_13670 PF00528 Binding-protein-dependent transport system inner membrane component FI878_13675 PF00528 Binding-protein-dependent transport system inner membrane component FI878_13680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FI878_13685 PF01464 Transglycosylase SLT domain FI878_13685 PF01476 LysM domain FI878_13685 PF01464 Transglycosylase SLT domain FI878_13685 PF01476 LysM domain FI878_13690 PF00929 Exonuclease FI878_13700 PF09297 NADH pyrophosphatase zinc ribbon domain FI878_13700 PF00293 NUDIX domain FI878_13710 PF04972 BON domain FI878_13715 PF02021 Uncharacterised protein family UPF0102 FI878_13720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FI878_13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_13730 PF03466 LysR substrate binding domain FI878_13735 PF01810 LysE type translocator FI878_13745 PF13411 MerR HTH family regulatory protein FI878_13755 PF01494 FAD binding domain FI878_13760 PF01494 FAD binding domain FI878_13765 PF05195 Aminopeptidase P, N-terminal domain FI878_13765 PF00557 Metallopeptidase family M24 FI878_13800 PF08019 Phosphoethanolamine transferase EptA/EptB FI878_13800 PF00884 Sulfatase FI878_13845 PF01551 Peptidase family M23 FI878_13845 PF08525 Opacity-associated protein A N-terminal motif FI878_13845 PF01476 LysM domain FI878_14170 PF01812 5-formyltetrahydrofolate cyclo-ligase family FI878_14180 PF05658 Head domain of trimeric autotransporter adhesin FI878_14180 PF03895 YadA-like membrane anchor domain FI878_14180 PF13018 Extended Signal Peptide of Type V secretion system FI878_14180 PF05662 Coiled stalk of trimeric autotransporter adhesin FI878_14185 PF05362 Lon protease (S16) C-terminal proteolytic domain FI878_14185 PF02190 ATP-dependent protease La (LON) substrate-binding domain FI878_14185 PF00004 ATPase family associated with various cellular activities (AAA) FI878_14195 PF02590 Predicted SPOUT methyltransferase FI878_14200 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FI878_14210 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FI878_14210 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FI878_14215 PF04060 Putative Fe-S cluster FI878_14220 PF10576 Iron-sulfur binding domain of endonuclease III FI878_14220 PF00730 HhH-GPD superfamily base excision DNA repair protein FI878_14220 PF00633 Helix-hairpin-helix motif FI878_14230 PF05191 Adenylate kinase, active site lid FI878_14245 PF03717 Penicillin-binding Protein dimerisation domain FI878_14245 PF00905 Penicillin binding protein transpeptidase domain FI878_14260 PF02492 CobW/HypB/UreG, nucleotide-binding domain FI878_14265 PF01730 UreF FI878_14270 PF05194 UreE urease accessory protein, C-terminal domain FI878_14270 PF02814 UreE urease accessory protein, N-terminal domain FI878_14275 PF01979 Amidohydrolase family FI878_14275 PF00449 Urease alpha-subunit, N-terminal domain FI878_14280 PF00699 Urease beta subunit FI878_14285 PF00547 Urease, gamma subunit FI878_14290 PF01774 UreD urease accessory protein FI878_14305 PF00463 Isocitrate lyase family FI878_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_14310 PF03466 LysR substrate binding domain FI878_14315 PF00571 CBS domain FI878_14315 PF03471 Transporter associated domain FI878_14315 PF01595 Cyclin M transmembrane N-terminal domain FI878_14325 PF03600 Citrate transporter FI878_14340 PF00009 Elongation factor Tu GTP binding domain FI878_14345 PF01507 Phosphoadenosine phosphosulfate reductase family FI878_14355 PF14052 Capsule assembly protein Wzi FI878_14360 PF01336 OB-fold nucleic acid binding domain FI878_14360 PF00152 tRNA synthetases class II (D, K and N) FI878_14375 PF00301 Rubredoxin FI878_14380 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_14380 PF18113 Rubredoxin binding C-terminal domain FI878_14385 PF00561 alpha/beta hydrolase fold FI878_14390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_14390 PF03466 LysR substrate binding domain FI878_14400 PF13090 Polyphosphate kinase C-terminal domain 2 FI878_14400 PF13089 Polyphosphate kinase N-terminal domain FI878_14400 PF17941 Polyphosphate kinase C-terminal domain 1 FI878_14400 PF02503 Polyphosphate kinase middle domain FI878_14405 PF00912 Transglycosylase FI878_14410 PF01694 Rhomboid family FI878_14420 PF00005 ABC transporter FI878_14425 PF13472 GDSL-like Lipase/Acylhydrolase family FI878_14430 PF00484 Carbonic anhydrase FI878_14435 PF00561 alpha/beta hydrolase fold FI878_14445 PF07715 TonB-dependent Receptor Plug Domain FI878_14445 PF00593 TonB dependent receptor FI878_14450 PF01521 Iron-sulphur cluster biosynthesis FI878_14450 PF01106 NifU-like domain FI878_14460 PF00884 Sulfatase FI878_14465 PF03781 Sulfatase-modifying factor enzyme 1 FI878_14480 PF00291 Pyridoxal-phosphate dependent enzyme FI878_14485 PF01384 Phosphate transporter family FI878_14490 PF02574 Homocysteine S-methyltransferase FI878_14490 PF02965 Vitamin B12 dependent methionine synthase, activation domain FI878_14490 PF02607 B12 binding domain FI878_14490 PF02310 B12 binding domain FI878_14490 PF00809 Pterin binding enzyme FI878_14495 PF02780 Transketolase, C-terminal domain FI878_14495 PF02779 Transketolase, pyrimidine binding domain FI878_14500 PF00456 Transketolase, thiamine diphosphate binding domain FI878_14505 PF07690 Major Facilitator Superfamily FI878_14515 PF03466 LysR substrate binding domain FI878_14515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_14530 PF01263 Aldose 1-epimerase FI878_14535 PF07690 Major Facilitator Superfamily FI878_14540 PF02311 AraC-like ligand binding domain FI878_14540 PF12833 Helix-turn-helix domain FI878_14545 PF04960 Glutaminase FI878_14550 PF01327 Polypeptide deformylase FI878_14555 PF07690 Major Facilitator Superfamily FI878_14565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FI878_14565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FI878_14565 PF00205 Thiamine pyrophosphate enzyme, central domain FI878_14570 PF00171 Aldehyde dehydrogenase family FI878_14575 PF03447 Homoserine dehydrogenase, NAD binding domain FI878_14575 PF01958 Domain of unknown function DUF108 FI878_14585 PF12697 Alpha/beta hydrolase family FI878_14595 PF07690 Major Facilitator Superfamily FI878_14600 PF14759 Reductase C-terminal FI878_14600 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_14605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FI878_14615 PF00355 Rieske [2Fe-2S] domain FI878_14625 PF00355 Rieske [2Fe-2S] domain FI878_14630 PF09339 IclR helix-turn-helix domain FI878_14630 PF01614 Bacterial transcriptional regulator FI878_14645 PF00378 Enoyl-CoA hydratase/isomerase FI878_14655 PF00535 Glycosyl transferase family 2 FI878_14660 PF14883 Hypothetical glycosyl hydrolase family 13 FI878_14660 PF01522 Polysaccharide deacetylase FI878_14665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FI878_14670 PF07152 YaeQ protein FI878_14675 PF00375 Sodium:dicarboxylate symporter family FI878_14680 PF02492 CobW/HypB/UreG, nucleotide-binding domain FI878_14680 PF07683 Cobalamin synthesis protein cobW C-terminal domain FI878_14690 PF03061 Thioesterase superfamily FI878_14700 PF02028 BCCT, betaine/carnitine/choline family transporter FI878_14705 PF02028 BCCT, betaine/carnitine/choline family transporter FI878_14710 PF13977 BetI-type transcriptional repressor, C-terminal FI878_14710 PF00440 Bacterial regulatory proteins, tetR family FI878_14715 PF00171 Aldehyde dehydrogenase family FI878_14720 PF00732 GMC oxidoreductase FI878_14720 PF05199 GMC oxidoreductase FI878_14725 PF06039 Malate:quinone oxidoreductase (Mqo) FI878_14735 PF02574 Homocysteine S-methyltransferase FI878_14740 PF13520 Amino acid permease FI878_14775 PF00701 Dihydrodipicolinate synthetase family FI878_14780 PF00083 Sugar (and other) transporter FI878_14910 PF02768 DNA polymerase III beta subunit, C-terminal domain FI878_14910 PF00712 DNA polymerase III beta subunit, N-terminal domain FI878_14910 PF02767 DNA polymerase III beta subunit, central domain FI878_14955 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FI878_15150 PF01695 IstB-like ATP binding protein FI878_15160 PF00145 C-5 cytosine-specific DNA methylase FI878_15240 PF00929 Exonuclease FI878_15310 PF07690 Major Facilitator Superfamily FI878_15315 PF13533 Biotin-lipoyl like FI878_15320 PF03061 Thioesterase superfamily FI878_15325 PF00490 Delta-aminolevulinic acid dehydratase FI878_15330 PF01266 FAD dependent oxidoreductase FI878_15335 PF01370 NAD dependent epimerase/dehydratase family FI878_15335 PF08338 Domain of unknown function (DUF1731) FI878_15355 PF00149 Calcineurin-like phosphoesterase FI878_15355 PF12320 Type 5 capsule protein repressor C-terminal domain FI878_15365 PF01168 Alanine racemase, N-terminal domain FI878_15370 PF00437 Type II/IV secretion system protein FI878_15375 PF00437 Type II/IV secretion system protein FI878_15380 PF01475 Ferric uptake regulator family FI878_15385 PF04355 SmpA / OmlA family FI878_15390 PF03658 RnfH family Ubiquitin FI878_15405 PF01814 Hemerythrin HHE cation binding domain FI878_15410 PF13230 Glutamine amidotransferases class-II FI878_15420 PF00696 Amino acid kinase family FI878_15425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FI878_15425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FI878_15425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FI878_15425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FI878_15430 PF00692 dUTPase FI878_15435 PF13361 UvrD-like helicase C-terminal domain FI878_15435 PF00580 UvrD/REP helicase N-terminal domain FI878_15440 PF13488 Glycine zipper FI878_15440 PF00691 OmpA family FI878_15445 PF01553 Acyltransferase FI878_15455 PF03775 Septum formation inhibitor MinC, C-terminal domain FI878_15460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FI878_15465 PF03776 Septum formation topological specificity factor MinE FI878_15480 PF01810 LysE type translocator FI878_15485 PF17854 FtsK alpha domain FI878_15485 PF09397 Ftsk gamma domain FI878_15485 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FI878_15485 PF01580 FtsK/SpoIIIE family FI878_15490 PF07992 Pyridine nucleotide-disulphide oxidoreductase FI878_15495 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FI878_15500 PF04377 Arginine-tRNA-protein transferase, C terminus FI878_15500 PF04376 Arginine-tRNA-protein transferase, N terminus FI878_15505 PF00583 Acetyltransferase (GNAT) family FI878_15520 PF00009 Elongation factor Tu GTP binding domain FI878_15520 PF03143 Elongation factor Tu C-terminal domain FI878_15520 PF03144 Elongation factor Tu domain 2 FI878_15525 PF03144 Elongation factor Tu domain 2 FI878_15525 PF00009 Elongation factor Tu GTP binding domain FI878_15525 PF03764 Elongation factor G, domain IV FI878_15525 PF14492 Elongation Factor G, domain II FI878_15525 PF00679 Elongation factor G C-terminus FI878_15530 PF00177 Ribosomal protein S7p/S5e FI878_15535 PF00164 Ribosomal protein S12/S23 FI878_15545 PF02801 Beta-ketoacyl synthase, C-terminal domain FI878_15545 PF00109 Beta-ketoacyl synthase, N-terminal domain FI878_15555 PF05726 Pirin C-terminal cupin domain FI878_15555 PF02678 Pirin FI878_15565 PF00795 Carbon-nitrogen hydrolase FI878_15565 PF02540 NAD synthase FI878_15580 PF00175 Oxidoreductase NAD-binding domain FI878_15580 PF00111 2Fe-2S iron-sulfur cluster binding domain FI878_15580 PF00970 Oxidoreductase FAD-binding domain FI878_15585 PF00171 Aldehyde dehydrogenase family FI878_15590 PF00355 Rieske [2Fe-2S] domain FI878_15590 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FI878_15595 PF07859 alpha/beta hydrolase fold FI878_15600 PF02028 BCCT, betaine/carnitine/choline family transporter FI878_15605 PF00180 Isocitrate/isopropylmalate dehydrogenase FI878_15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_15610 PF03466 LysR substrate binding domain FI878_15630 PF00037 4Fe-4S binding domain FI878_15635 PF01467 Cytidylyltransferase-like FI878_15640 PF01668 SmpB protein FI878_15645 PF03358 NADPH-dependent FMN reductase FI878_15655 PF01479 S4 domain FI878_15655 PF00849 RNA pseudouridylate synthase FI878_15660 PF13525 Outer membrane lipoprotein FI878_15665 PF10410 DnaB-helicase binding domain of primase FI878_15665 PF08278 DNA primase DnaG DnaB-binding FI878_15665 PF01807 CHC2 zinc finger FI878_15665 PF08275 DNA primase catalytic core, N-terminal domain FI878_15670 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FI878_15670 PF01488 Shikimate / quinate 5-dehydrogenase FI878_15670 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FI878_15680 PF03550 Outer membrane lipoprotein LolB FI878_15685 PF00288 GHMP kinases N terminal domain FI878_15685 PF08544 GHMP kinases C terminal FI878_15705 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FI878_15705 PF14572 Phosphoribosyl synthetase-associated domain FI878_15710 PF01386 Ribosomal L25p family FI878_15715 PF01195 Peptidyl-tRNA hydrolase FI878_15720 PF02261 Aspartate decarboxylase FI878_15735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FI878_15745 PF03070 TENA/THI-4/PQQC family FI878_15745 PF02581 Thiamine monophosphate synthase FI878_15745 PF08543 Phosphomethylpyrimidine kinase FI878_15750 PF01476 LysM domain FI878_15750 PF04972 BON domain FI878_15755 PF00550 Phosphopantetheine attachment site FI878_15765 PF00698 Acyl transferase domain FI878_15770 PF01783 Ribosomal L32p protein family FI878_15775 PF02620 Large ribosomal RNA subunit accumulation protein YceD FI878_15780 PF04315 Elongation factor P hydroxylase FI878_15785 PF01300 Telomere recombination FI878_15790 PF02616 Segregation and condensation protein ScpA FI878_15795 PF04079 Segregation and condensation complex subunit ScpB FI878_15800 PF00849 RNA pseudouridylate synthase FI878_15800 PF01479 S4 domain FI878_15815 PF00155 Aminotransferase class I and II FI878_15820 PF06968 Biotin and Thiamin Synthesis associated domain FI878_15820 PF00202 Aminotransferase class-III FI878_15820 PF04055 Radical SAM superfamily FI878_15825 PF12697 Alpha/beta hydrolase family FI878_15825 PF08241 Methyltransferase domain FI878_15830 PF02358 Trehalose-phosphatase FI878_15835 PF00982 Glycosyltransferase family 20 FI878_15840 PF07690 Major Facilitator Superfamily FI878_15845 PF00210 Ferritin-like domain FI878_15850 PF01653 NAD-dependent DNA ligase adenylation domain FI878_15850 PF03120 NAD-dependent DNA ligase OB-fold domain FI878_15850 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FI878_15850 PF00533 BRCA1 C Terminus (BRCT) domain FI878_15850 PF12826 Helix-hairpin-helix motif FI878_15860 PF02463 RecF/RecN/SMC N terminal domain FI878_15860 PF06470 SMC proteins Flexible Hinge Domain FI878_15870 PF01925 Sulfite exporter TauE/SafE FI878_15880 PF03309 Type III pantothenate kinase FI878_15885 PF02978 Signal peptide binding domain FI878_15885 PF02881 SRP54-type protein, helical bundle domain FI878_15885 PF00448 SRP54-type protein, GTPase domain FI878_15895 PF01207 Dihydrouridine synthase (Dus) FI878_15930 PF00692 dUTPase FI878_15945 PF01048 Phosphorylase superfamily FI878_15955 PF10609 NUBPL iron-transfer P-loop NTPase FI878_15965 PF01588 Putative tRNA binding domain FI878_15965 PF09334 tRNA synthetases class I (M) FI878_15990 PF13533 Biotin-lipoyl like FI878_15995 PF00291 Pyridoxal-phosphate dependent enzyme FI878_16010 PF05552 Conserved TM helix FI878_16025 PF00970 Oxidoreductase FAD-binding domain FI878_16025 PF00175 Oxidoreductase NAD-binding domain FI878_16030 PF03466 LysR substrate binding domain FI878_16030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_16035 PF00313 'Cold-shock' DNA-binding domain FI878_16045 PF00361 Proton-conducting membrane transporter FI878_16050 PF00361 Proton-conducting membrane transporter FI878_16055 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FI878_16055 PF00361 Proton-conducting membrane transporter FI878_16060 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FI878_16065 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FI878_16070 PF12838 4Fe-4S dicluster domain FI878_16075 PF00146 NADH dehydrogenase FI878_16080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FI878_16080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FI878_16080 PF00384 Molybdopterin oxidoreductase FI878_16085 PF10531 SLBB domain FI878_16085 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FI878_16085 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FI878_16095 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FI878_16095 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FI878_16100 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FI878_16105 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FI878_16110 PF00990 Diguanylate cyclase, GGDEF domain FI878_16110 PF17151 Periplasmic sensor domain FI878_16120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_16120 PF00512 His Kinase A (phospho-acceptor) domain FI878_16120 PF00672 HAMP domain FI878_16125 PF00486 Transcriptional regulatory protein, C terminal FI878_16125 PF00072 Response regulator receiver domain FI878_16135 PF02867 Ribonucleotide reductase, barrel domain FI878_16135 PF00317 Ribonucleotide reductase, all-alpha domain FI878_16135 PF03477 ATP cone domain FI878_16145 PF00268 Ribonucleotide reductase, small chain FI878_16155 PF13755 Sensor N-terminal transmembrane domain FI878_16155 PF00512 His Kinase A (phospho-acceptor) domain FI878_16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_16155 PF00672 HAMP domain FI878_16155 PF13756 Stimulus-sensing domain FI878_16215 PF12762 ISXO2-like transposase domain FI878_16250 PF13360 PQQ-like domain FI878_16250 PF01011 PQQ enzyme repeat FI878_16270 PF02567 Phenazine biosynthesis-like protein FI878_16300 PF01613 Flavin reductase like domain FI878_16305 PF08267 Cobalamin-independent synthase, N-terminal domain FI878_16305 PF01717 Cobalamin-independent synthase, Catalytic domain FI878_16315 PF03466 LysR substrate binding domain FI878_16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_16320 PF01810 LysE type translocator FI878_16330 PF12833 Helix-turn-helix domain FI878_16330 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FI878_16335 PF07687 Peptidase dimerisation domain FI878_16335 PF01546 Peptidase family M20/M25/M40 FI878_16345 PF03466 LysR substrate binding domain FI878_16345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_16355 PF07690 Major Facilitator Superfamily FI878_16365 PF03466 LysR substrate binding domain FI878_16365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_16370 PF14537 Cytochrome c3 FI878_16370 PF00890 FAD binding domain FI878_16380 PF02515 CoA-transferase family III FI878_16385 PF07690 Major Facilitator Superfamily FI878_16390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_16390 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_16390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_16395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_16395 PF03466 LysR substrate binding domain FI878_16400 PF08240 Alcohol dehydrogenase GroES-like domain FI878_16400 PF00107 Zinc-binding dehydrogenase FI878_16405 PF00962 Adenosine/AMP deaminase FI878_16430 PF02445 Quinolinate synthetase A protein FI878_16435 PF01960 ArgJ family FI878_16440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FI878_16440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FI878_16445 PF00893 Small Multidrug Resistance protein FI878_16455 PF05275 Copper resistance protein B precursor (CopB) FI878_16460 PF07732 Multicopper oxidase FI878_16460 PF07731 Multicopper oxidase FI878_16460 PF00394 Multicopper oxidase FI878_16475 PF00834 Ribulose-phosphate 3 epimerase family FI878_16485 PF00756 Putative esterase FI878_16495 PF04445 Putative SAM-dependent methyltransferase FI878_16500 PF00814 Glycoprotease family FI878_16505 PF00132 Bacterial transferase hexapeptide (six repeats) FI878_16510 PF00293 NUDIX domain FI878_16550 PF00425 chorismate binding enzyme FI878_16550 PF04715 Anthranilate synthase component I, N terminal region FI878_16555 PF00155 Aminotransferase class I and II FI878_16560 PF00815 Histidinol dehydrogenase FI878_16565 PF01634 ATP phosphoribosyltransferase FI878_16570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FI878_16575 PF01722 BolA-like protein FI878_16580 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FI878_16585 PF00309 Sigma-54 factor, Activator interacting domain (AID) FI878_16585 PF04552 Sigma-54, DNA binding domain FI878_16585 PF04963 Sigma-54 factor, core binding domain FI878_16630 PF00795 Carbon-nitrogen hydrolase FI878_16640 PF01047 MarR family FI878_16645 PF02566 OsmC-like protein FI878_16650 PF00437 Type II/IV secretion system protein FI878_16670 PF00476 DNA polymerase family A FI878_16670 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FI878_16670 PF01612 3'-5' exonuclease FI878_16670 PF01367 5'-3' exonuclease, C-terminal SAM fold FI878_16675 PF02325 YGGT family FI878_16680 PF14748 Pyrroline-5-carboxylate reductase dimerisation FI878_16680 PF03807 NADP oxidoreductase coenzyme F420-dependent FI878_16685 PF09179 TilS substrate binding domain FI878_16685 PF11734 TilS substrate C-terminal domain FI878_16685 PF01171 PP-loop family FI878_16690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FI878_16695 PF02541 Ppx/GppA phosphatase family FI878_16700 PF00085 Thioredoxin FI878_16705 PF07497 Rho termination factor, RNA-binding domain FI878_16705 PF07498 Rho termination factor, N-terminal domain FI878_16705 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FI878_16720 PF00216 Bacterial DNA-binding protein FI878_16725 PF03483 B3/4 domain FI878_16725 PF03484 tRNA synthetase B5 domain FI878_16725 PF03147 Ferredoxin-fold anticodon binding domain FI878_16725 PF01588 Putative tRNA binding domain FI878_16725 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FI878_16730 PF01409 tRNA synthetases class II core domain (F) FI878_16730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FI878_16750 PF00453 Ribosomal protein L20 FI878_16755 PF01632 Ribosomal protein L35 FI878_16760 PF07690 Major Facilitator Superfamily FI878_16765 PF09335 SNARE associated Golgi protein FI878_16770 PF02798 Glutathione S-transferase, N-terminal domain FI878_16770 PF00043 Glutathione S-transferase, C-terminal domain FI878_16780 PF00707 Translation initiation factor IF-3, C-terminal domain FI878_16780 PF05198 Translation initiation factor IF-3, N-terminal domain FI878_16785 PF02824 TGS domain FI878_16785 PF03129 Anticodon binding domain FI878_16785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FI878_16785 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FI878_16790 PF00501 AMP-binding enzyme FI878_16790 PF13193 AMP-binding enzyme C-terminal domain FI878_16795 PF04751 Protein of unknown function (DUF615) FI878_16800 PF00381 PTS HPr component phosphorylation site FI878_16805 PF03668 P-loop ATPase protein family FI878_16810 PF02569 Pantoate-beta-alanine ligase FI878_16815 PF02548 Ketopantoate hydroxymethyltransferase FI878_16820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FI878_16825 PF12626 Polymerase A arginine-rich C-terminus FI878_16825 PF12627 Probable RNA and SrmB- binding site of polymerase A FI878_16825 PF01743 Poly A polymerase head domain FI878_16835 PF03819 MazG nucleotide pyrophosphohydrolase domain FI878_16845 PF13291 ACT domain FI878_16845 PF04607 Region found in RelA / SpoT proteins FI878_16845 PF02824 TGS domain FI878_16850 PF05958 tRNA (Uracil-5-)-methyltransferase FI878_16860 PF00291 Pyridoxal-phosphate dependent enzyme FI878_16865 PF01627 Hpt domain FI878_16865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_16865 PF00512 His Kinase A (phospho-acceptor) domain FI878_16865 PF00072 Response regulator receiver domain FI878_16865 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FI878_16865 PF00672 HAMP domain FI878_16870 PF00378 Enoyl-CoA hydratase/isomerase FI878_16875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FI878_16875 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FI878_16880 PF01261 Xylose isomerase-like TIM barrel FI878_16890 PF00106 short chain dehydrogenase FI878_16895 PF02233 NAD(P) transhydrogenase beta subunit FI878_16900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FI878_16905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FI878_16905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FI878_16910 PF12762 ISXO2-like transposase domain FI878_16915 PF00892 EamA-like transporter family FI878_16925 PF07690 Major Facilitator Superfamily FI878_16930 PF01207 Dihydrouridine synthase (Dus) FI878_16940 PF03466 LysR substrate binding domain FI878_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_16950 PF00899 ThiF family FI878_16960 PF00330 Aconitase family (aconitate hydratase) FI878_16960 PF00694 Aconitase C-terminal domain FI878_16965 PF01026 TatD related DNase FI878_16980 PF03144 Elongation factor Tu domain 2 FI878_16980 PF16658 Class II release factor RF3, C-terminal domain FI878_16980 PF00009 Elongation factor Tu GTP binding domain FI878_17000 PF12762 ISXO2-like transposase domain FI878_17010 PF03707 Bacterial signalling protein N terminal repeat FI878_17010 PF00563 EAL domain FI878_17010 PF00990 Diguanylate cyclase, GGDEF domain FI878_17015 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FI878_17015 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FI878_17020 PF10369 Small subunit of acetolactate synthase FI878_17025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FI878_17025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FI878_17025 PF00205 Thiamine pyrophosphate enzyme, central domain FI878_17035 PF09334 tRNA synthetases class I (M) FI878_17035 PF13603 Leucyl-tRNA synthetase, Domain 2 FI878_17035 PF00133 tRNA synthetases class I (I, L, M and V) FI878_17035 PF08264 Anticodon-binding domain of tRNA FI878_17050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FI878_17055 PF00005 ABC transporter FI878_17055 PF12704 MacB-like periplasmic core domain FI878_17055 PF02687 FtsX-like permease family FI878_17060 PF02321 Outer membrane efflux protein FI878_17075 PF00929 Exonuclease FI878_17080 PF03193 RsgA GTPase FI878_17090 PF00462 Glutaredoxin FI878_17095 PF02556 Preprotein translocase subunit SecB FI878_17110 PF02801 Beta-ketoacyl synthase, C-terminal domain FI878_17110 PF00109 Beta-ketoacyl synthase, N-terminal domain FI878_17125 PF02801 Beta-ketoacyl synthase, C-terminal domain FI878_17125 PF00109 Beta-ketoacyl synthase, N-terminal domain FI878_17135 PF04820 Tryptophan halogenase FI878_17155 PF00221 Aromatic amino acid lyase FI878_17170 PF13193 AMP-binding enzyme C-terminal domain FI878_17170 PF00501 AMP-binding enzyme FI878_17180 PF00550 Phosphopantetheine attachment site FI878_17185 PF00550 Phosphopantetheine attachment site FI878_17200 PF01926 50S ribosome-binding GTPase FI878_17200 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FI878_17205 PF13360 PQQ-like domain FI878_17215 PF03129 Anticodon binding domain FI878_17215 PF13393 Histidyl-tRNA synthetase FI878_17220 PF04551 GcpE protein FI878_17225 PF13464 Domain of unknown function (DUF4115) FI878_17235 PF04055 Radical SAM superfamily FI878_17240 PF00334 Nucleoside diphosphate kinase FI878_17245 PF04384 Iron-sulphur cluster assembly FI878_17250 PF01569 PAP2 superfamily FI878_17255 PF13439 Glycosyltransferase Family 4 FI878_17255 PF00534 Glycosyl transferases group 1 FI878_17260 PF03572 Peptidase family S41 FI878_17260 PF17804 Tail specific protease N-terminal domain FI878_17260 PF11818 C-terminal domain of tail specific protease (DUF3340) FI878_17260 PF00595 PDZ domain FI878_17265 PF00933 Glycosyl hydrolase family 3 N terminal domain FI878_17275 PF00561 alpha/beta hydrolase fold FI878_17280 PF00171 Aldehyde dehydrogenase family FI878_17285 PF00171 Aldehyde dehydrogenase family FI878_17290 PF01202 Shikimate kinase FI878_17295 PF02447 GntP family permease FI878_17300 PF01081 KDPG and KHG aldolase FI878_17305 PF00920 Dehydratase family FI878_17315 PF00871 Acetokinase family FI878_17320 PF01515 Phosphate acetyl/butaryl transferase FI878_17320 PF07085 DRTGG domain FI878_17325 PF05681 Fumarate hydratase (Fumerase) FI878_17325 PF05683 Fumarase C-terminus FI878_17340 PF06689 ClpX C4-type zinc finger FI878_17340 PF10431 C-terminal, D2-small domain, of ClpB protein FI878_17340 PF07724 AAA domain (Cdc48 subfamily) FI878_17345 PF00574 Clp protease FI878_17350 PF05697 Bacterial trigger factor protein (TF) FI878_17350 PF05698 Bacterial trigger factor protein (TF) C-terminus FI878_17350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FI878_17355 PF07715 TonB-dependent Receptor Plug Domain FI878_17355 PF00593 TonB dependent receptor FI878_17360 PF18331 PKHD-type hydroxylase C-terminal domain FI878_17360 PF13640 2OG-Fe(II) oxygenase superfamily FI878_17365 PF08502 LeuA allosteric (dimerisation) domain FI878_17365 PF00682 HMGL-like FI878_17370 PF00561 alpha/beta hydrolase fold FI878_17375 PF07021 Methionine biosynthesis protein MetW FI878_17375 PF00561 alpha/beta hydrolase fold FI878_17385 PF01725 Ham1 family FI878_17395 PF02416 mttA/Hcf106 family FI878_17400 PF02416 mttA/Hcf106 family FI878_17405 PF00902 Sec-independent protein translocase protein (TatC) FI878_17425 PF01790 Prolipoprotein diacylglyceryl transferase FI878_17440 PF00303 Thymidylate synthase FI878_17445 PF00186 Dihydrofolate reductase FI878_17455 PF01625 Peptide methionine sulfoxide reductase FI878_17465 PF01618 MotA/TolQ/ExbB proton channel family FI878_17475 PF00551 Formyl transferase FI878_17475 PF01842 ACT domain FI878_17485 PF00171 Aldehyde dehydrogenase family FI878_17490 PF00830 Ribosomal L28 family FI878_17495 PF00471 Ribosomal protein L33 FI878_17500 PF00999 Sodium/hydrogen exchanger family FI878_17500 PF02254 TrkA-N domain FI878_17520 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FI878_17525 PF00580 UvrD/REP helicase N-terminal domain FI878_17525 PF13361 UvrD-like helicase C-terminal domain FI878_17540 PF08272 Topoisomerase I zinc-ribbon-like FI878_17540 PF01396 Topoisomerase DNA binding C4 zinc finger FI878_17540 PF01751 Toprim domain FI878_17540 PF01131 DNA topoisomerase FI878_17550 PF01638 HxlR-like helix-turn-helix FI878_17555 PF00107 Zinc-binding dehydrogenase FI878_17555 PF08240 Alcohol dehydrogenase GroES-like domain FI878_17560 PF04102 SlyX FI878_17570 PF01810 LysE type translocator FI878_17575 PF03279 Bacterial lipid A biosynthesis acyltransferase FI878_17585 PF00375 Sodium:dicarboxylate symporter family FI878_17595 PF02774 Semialdehyde dehydrogenase, dimerisation domain FI878_17595 PF01118 Semialdehyde dehydrogenase, NAD binding domain FI878_17615 PF01416 tRNA pseudouridine synthase FI878_17625 PF01176 Translation initiation factor 1A / IF-1 FI878_17640 PF00180 Isocitrate/isopropylmalate dehydrogenase FI878_17650 PF00694 Aconitase C-terminal domain FI878_17655 PF00330 Aconitase family (aconitate hydratase) FI878_17665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_17665 PF03466 LysR substrate binding domain FI878_17685 PF00293 NUDIX domain FI878_17690 PF01590 GAF domain FI878_17690 PF05524 PEP-utilising enzyme, N-terminal FI878_17690 PF00391 PEP-utilising enzyme, mobile domain FI878_17690 PF02896 PEP-utilising enzyme, TIM barrel domain FI878_17695 PF00141 Peroxidase FI878_17700 PF12706 Beta-lactamase superfamily domain FI878_17705 PF03466 LysR substrate binding domain FI878_17705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_17715 PF02798 Glutathione S-transferase, N-terminal domain FI878_17720 PF13280 WYL domain FI878_17720 PF08279 HTH domain FI878_17725 PF13419 Haloacid dehalogenase-like hydrolase FI878_17730 PF00849 RNA pseudouridylate synthase FI878_17730 PF01479 S4 domain FI878_17740 PF10150 Ribonuclease E/G family FI878_17740 PF00575 S1 RNA binding domain FI878_17740 PF12111 Polyribonucleotide phosphorylase C terminal FI878_17745 PF00501 AMP-binding enzyme FI878_17745 PF13193 AMP-binding enzyme C-terminal domain FI878_17760 PF03466 LysR substrate binding domain FI878_17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_17765 PF00106 short chain dehydrogenase FI878_17770 PF06969 HemN C-terminal domain FI878_17770 PF04055 Radical SAM superfamily FI878_17780 PF01554 MatE FI878_17785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_17785 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_17785 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FI878_17790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_17790 PF08028 Acyl-CoA dehydrogenase, C-terminal domain FI878_17795 PF03109 ABC1 family FI878_17800 PF01197 Ribosomal protein L31 FI878_17815 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FI878_17835 PF03884 DNA gyrase inhibitor YacG FI878_17840 PF00753 Metallo-beta-lactamase superfamily FI878_17845 PF00762 Ferrochelatase FI878_17855 PF01177 Asp/Glu/Hydantoin racemase FI878_17870 PF01206 Sulfurtransferase TusA FI878_17875 PF03471 Transporter associated domain FI878_17875 PF00571 CBS domain FI878_17880 PF00795 Carbon-nitrogen hydrolase FI878_17885 PF01588 Putative tRNA binding domain FI878_17895 PF08334 Type II secretion system (T2SS), protein G FI878_17895 PF07963 Prokaryotic N-terminal methylation motif FI878_17900 PF00482 Type II secretion system (T2SS), protein F FI878_17905 PF17764 3′ DNA-binding domain (3′BD) FI878_17905 PF00270 DEAD/DEAH box helicase FI878_17905 PF00271 Helicase conserved C-terminal domain FI878_17905 PF18074 Primosomal protein N C-terminal domain FI878_17905 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FI878_17910 PF02254 TrkA-N domain FI878_17910 PF00999 Sodium/hydrogen exchanger family FI878_17915 PF01430 Hsp33 protein FI878_17925 PF01556 DnaJ C terminal domain FI878_17925 PF00226 DnaJ domain FI878_17935 PF01544 CorA-like Mg2+ transporter protein FI878_17940 PF00575 S1 RNA binding domain FI878_17940 PF01138 3' exoribonuclease family, domain 1 FI878_17940 PF00013 KH domain FI878_17940 PF03725 3' exoribonuclease family, domain 2 FI878_17940 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FI878_17945 PF00312 Ribosomal protein S15 FI878_17955 PF13538 UvrD-like helicase C-terminal domain FI878_17960 PF12705 PD-(D/E)XK nuclease superfamily FI878_17960 PF00580 UvrD/REP helicase N-terminal domain FI878_17960 PF13361 UvrD-like helicase C-terminal domain FI878_17965 PF17946 RecC C-terminal domain FI878_17975 PF03976 Polyphosphate kinase 2 (PPK2) FI878_17985 PF01209 ubiE/COQ5 methyltransferase family FI878_17995 PF03109 ABC1 family FI878_18000 PF01494 FAD binding domain FI878_18005 PF01502 Phosphoribosyl-AMP cyclohydrolase FI878_18020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FI878_18020 PF00361 Proton-conducting membrane transporter FI878_18020 PF13244 Domain of unknown function (DUF4040) FI878_18020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FI878_18025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FI878_18030 PF00361 Proton-conducting membrane transporter FI878_18040 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FI878_18050 PF02033 Ribosome-binding factor A FI878_18055 PF11987 Translation-initiation factor 2 FI878_18055 PF00009 Elongation factor Tu GTP binding domain FI878_18055 PF04760 Translation initiation factor IF-2, N-terminal region FI878_18055 PF08364 Bacterial translation initiation factor IF-2 associated region FI878_18060 PF13184 NusA-like KH domain FI878_18060 PF00575 S1 RNA binding domain FI878_18060 PF08529 NusA N-terminal domain FI878_18065 PF02576 RimP N-terminal domain FI878_18065 PF17384 RimP C-terminal SH3 domain FI878_18085 PF03840 Preprotein translocase SecG subunit FI878_18090 PF00121 Triosephosphate isomerase FI878_18095 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FI878_18095 PF00437 Type II/IV secretion system protein FI878_18100 PF00482 Type II secretion system (T2SS), protein F FI878_18105 PF01478 Type IV leader peptidase family FI878_18105 PF06750 Bacterial Peptidase A24 N-terminal domain FI878_18110 PF01121 Dephospho-CoA kinase FI878_18120 PF08032 RNA 2'-O ribose methyltransferase substrate binding FI878_18120 PF00588 SpoU rRNA Methylase family FI878_18125 PF06865 Pyrimidine/purine nucleoside phosphorylase FI878_18135 PF02463 RecF/RecN/SMC N terminal domain FI878_18140 PF02622 Uncharacterized ACR, COG1678 FI878_18145 PF03652 Holliday junction resolvase FI878_18150 PF13533 Biotin-lipoyl like FI878_18175 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FI878_18175 PF02805 Metal binding domain of Ada FI878_18175 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FI878_18175 PF12833 Helix-turn-helix domain FI878_18180 PF01066 CDP-alcohol phosphatidyltransferase FI878_18190 PF08459 UvrC Helix-hairpin-helix N-terminal FI878_18190 PF02151 UvrB/uvrC motif FI878_18190 PF01541 GIY-YIG catalytic domain FI878_18215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FI878_18215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FI878_18215 PF00378 Enoyl-CoA hydratase/isomerase FI878_18220 PF00108 Thiolase, N-terminal domain FI878_18220 PF02803 Thiolase, C-terminal domain FI878_18240 PF09278 MerR, DNA binding FI878_18240 PF00376 MerR family regulatory protein FI878_18250 PF01323 DSBA-like thioredoxin domain FI878_18265 PF00183 Hsp90 protein FI878_18265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_18280 PF03553 Na+/H+ antiporter family FI878_18280 PF13726 Na+-H+ antiporter family FI878_18285 PF00561 alpha/beta hydrolase fold FI878_18315 PF04998 RNA polymerase Rpb1, domain 5 FI878_18315 PF05000 RNA polymerase Rpb1, domain 4 FI878_18315 PF00623 RNA polymerase Rpb1, domain 2 FI878_18315 PF04983 RNA polymerase Rpb1, domain 3 FI878_18315 PF04997 RNA polymerase Rpb1, domain 1 FI878_18320 PF04560 RNA polymerase Rpb2, domain 7 FI878_18320 PF00562 RNA polymerase Rpb2, domain 6 FI878_18320 PF04563 RNA polymerase beta subunit FI878_18320 PF04565 RNA polymerase Rpb2, domain 3 FI878_18320 PF04561 RNA polymerase Rpb2, domain 2 FI878_18320 PF10385 RNA polymerase beta subunit external 1 domain FI878_18325 PF16320 Ribosomal protein L7/L12 dimerisation domain FI878_18325 PF00542 Ribosomal protein L7/L12 C-terminal domain FI878_18330 PF00466 Ribosomal protein L10 FI878_18335 PF00687 Ribosomal protein L1p/L10e family FI878_18340 PF00298 Ribosomal protein L11, RNA binding domain FI878_18340 PF03946 Ribosomal protein L11, N-terminal domain FI878_18345 PF02357 Transcription termination factor nusG FI878_18345 PF00467 KOW motif FI878_18350 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FI878_18360 PF03144 Elongation factor Tu domain 2 FI878_18360 PF00009 Elongation factor Tu GTP binding domain FI878_18360 PF03143 Elongation factor Tu C-terminal domain FI878_18385 PF00425 chorismate binding enzyme FI878_18385 PF04715 Anthranilate synthase component I, N terminal region FI878_18390 PF13419 Haloacid dehalogenase-like hydrolase FI878_18395 PF12401 Protein of unknown function (DUF2662) FI878_18395 PF00498 FHA domain FI878_18400 PF00263 Bacterial type II and III secretion system protein FI878_18400 PF03958 Bacterial type II/III secretion system short domain FI878_18415 PF00816 H-NS histone family FI878_18440 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FI878_18440 PF03900 Porphobilinogen deaminase, C-terminal domain FI878_18445 PF00072 Response regulator receiver domain FI878_18445 PF04397 LytTr DNA-binding domain FI878_18450 PF07694 5TMR of 5TMR-LYT FI878_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_18450 PF06580 Histidine kinase FI878_18455 PF00206 Lyase FI878_18455 PF14698 Argininosuccinate lyase C-terminal FI878_18460 PF04362 Bacterial Fe(2+) trafficking FI878_18465 PF01895 PhoU domain FI878_18470 PF02321 Outer membrane efflux protein FI878_18475 PF00892 EamA-like transporter family FI878_18490 PF01964 Radical SAM ThiC family FI878_18490 PF13667 ThiC-associated domain FI878_18495 PF00293 NUDIX domain FI878_18500 PF00149 Calcineurin-like phosphoesterase FI878_18505 PF01258 Prokaryotic dksA/traR C4-type zinc finger FI878_18510 PF00749 tRNA synthetases class I (E and Q), catalytic domain FI878_18515 PF01098 Cell cycle protein FI878_18520 PF02875 Mur ligase family, glutamate ligase domain FI878_18520 PF08245 Mur ligase middle domain FI878_18530 PF07664 Ferrous iron transport protein B C terminus FI878_18530 PF02421 Ferrous iron transport protein B FI878_18530 PF07670 Nucleoside recognition FI878_18540 PF00589 Phage integrase family FI878_18540 PF02899 Phage integrase, N-terminal SAM-like domain FI878_18545 PF13098 Thioredoxin-like domain FI878_18545 PF10411 Disulfide bond isomerase protein N-terminus FI878_18550 PF03447 Homoserine dehydrogenase, NAD binding domain FI878_18550 PF00742 Homoserine dehydrogenase FI878_18550 PF01842 ACT domain FI878_18555 PF00291 Pyridoxal-phosphate dependent enzyme FI878_18560 PF00768 D-alanyl-D-alanine carboxypeptidase FI878_18565 PF00196 Bacterial regulatory proteins, luxR family FI878_18565 PF00072 Response regulator receiver domain FI878_18570 PF00512 His Kinase A (phospho-acceptor) domain FI878_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FI878_18575 PF00158 Sigma-54 interaction domain FI878_18575 PF00072 Response regulator receiver domain FI878_18575 PF02954 Bacterial regulatory protein, Fis family FI878_18580 PF03572 Peptidase family S41 FI878_18580 PF00595 PDZ domain FI878_18585 PF01676 Metalloenzyme superfamily FI878_18585 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FI878_18590 PF03739 Lipopolysaccharide export system permease LptF/LptG FI878_18600 PF02789 Cytosol aminopeptidase family, N-terminal domain FI878_18600 PF00883 Cytosol aminopeptidase family, catalytic domain FI878_18620 PF00677 Lumazine binding domain FI878_18630 PF01872 RibD C-terminal domain FI878_18630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FI878_18635 PF03477 ATP cone domain FI878_18640 PF00909 Ammonium Transporter Family FI878_18645 PF00543 Nitrogen regulatory protein P-II FI878_18655 PF01078 Magnesium chelatase, subunit ChlI FI878_18655 PF13335 Magnesium chelatase, subunit ChlI C-terminal FI878_18665 PF01636 Phosphotransferase enzyme family FI878_18670 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase FI878_18695 PF02909 Tetracyclin repressor-like, C-terminal domain FI878_18695 PF00440 Bacterial regulatory proteins, tetR family FI878_18700 PF07690 Major Facilitator Superfamily FI878_18715 PF00905 Penicillin binding protein transpeptidase domain FI878_18740 PF01740 STAS domain FI878_18740 PF00916 Sulfate permease family FI878_18745 PF00582 Universal stress protein family FI878_18770 PF12762 ISXO2-like transposase domain FI878_18785 PF01078 Magnesium chelatase, subunit ChlI FI878_18785 PF13335 Magnesium chelatase, subunit ChlI C-terminal FI878_18790 PF00392 Bacterial regulatory proteins, gntR family FI878_18790 PF00155 Aminotransferase class I and II FI878_18800 PF00701 Dihydrodipicolinate synthetase family FI878_18810 PF03573 outer membrane porin, OprD family FI878_18815 PF00719 Inorganic pyrophosphatase FI878_18830 PF00501 AMP-binding enzyme FI878_18830 PF13193 AMP-binding enzyme C-terminal domain FI878_18835 PF03989 DNA gyrase C-terminal domain, beta-propeller FI878_18835 PF00521 DNA gyrase/topoisomerase IV, subunit A FI878_18840 PF07690 Major Facilitator Superfamily FI878_18845 PF03458 UPF0126 domain FI878_18850 PF02810 SEC-C motif FI878_18855 PF03741 Integral membrane protein TerC family FI878_18855 PF03471 Transporter associated domain FI878_18860 PF03641 Possible lysine decarboxylase FI878_18865 PF07690 Major Facilitator Superfamily FI878_18875 PF11798 IMS family HHH motif FI878_18875 PF11799 impB/mucB/samB family C-terminal domain FI878_18875 PF00817 impB/mucB/samB family FI878_18890 PF08497 Radical SAM N-terminal FI878_18890 PF04055 Radical SAM superfamily FI878_18890 PF11842 Domain of unknown function (DUF3362) FI878_18910 PF03358 NADPH-dependent FMN reductase FI878_18920 PF00291 Pyridoxal-phosphate dependent enzyme FI878_18980 PF01327 Polypeptide deformylase FI878_18990 PF17782 DprA winged helix domain FI878_18990 PF02481 DNA recombination-mediator protein A FI878_18995 PF01300 Telomere recombination FI878_19000 PF00892 EamA-like transporter family FI878_19005 PF00440 Bacterial regulatory proteins, tetR family FI878_19010 PF07690 Major Facilitator Superfamily FI878_19020 PF00255 Glutathione peroxidase FI878_19030 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FI878_19035 PF02874 ATP synthase alpha/beta family, beta-barrel domain FI878_19035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FI878_19040 PF00231 ATP synthase FI878_19045 PF00306 ATP synthase alpha/beta chain, C terminal domain FI878_19045 PF02874 ATP synthase alpha/beta family, beta-barrel domain FI878_19045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FI878_19050 PF00213 ATP synthase delta (OSCP) subunit FI878_19055 PF00430 ATP synthase B/B' CF(0) FI878_19060 PF00137 ATP synthase subunit C FI878_19065 PF00119 ATP synthase A chain FI878_19085 PF00005 ABC transporter FI878_19090 PF00950 ABC 3 transport family FI878_19095 PF01810 LysE type translocator FI878_19100 PF04261 Dyp-type peroxidase family FI878_19105 PF03949 Malic enzyme, NAD binding domain FI878_19105 PF00390 Malic enzyme, N-terminal domain FI878_19110 PF00750 tRNA synthetases class I (R) FI878_19110 PF05746 DALR anticodon binding domain FI878_19110 PF03485 Arginyl tRNA synthetase N terminal domain FI878_19130 PF02678 Pirin FI878_19130 PF05726 Pirin C-terminal cupin domain FI878_19140 PF03551 Transcriptional regulator PadR-like family FI878_19145 PF01909 Nucleotidyltransferase domain FI878_19145 PF13427 Domain of unknown function (DUF4111) FI878_19150 PF02540 NAD synthase FI878_19150 PF00958 GMP synthase C terminal domain FI878_19150 PF00117 Glutamine amidotransferase class-I FI878_19155 PF04286 Protein of unknown function (DUF445) FI878_19160 PF07681 DoxX FI878_19165 PF09335 SNARE associated Golgi protein FI878_19180 PF13614 AAA domain FI878_19190 PF01722 BolA-like protein FI878_19205 PF01648 4'-phosphopantetheinyl transferase superfamily FI878_19210 PF12697 Alpha/beta hydrolase family FI878_19215 PF13737 Transposase DDE domain FI878_19225 PF00378 Enoyl-CoA hydratase/isomerase FI878_19230 PF00378 Enoyl-CoA hydratase/isomerase FI878_19235 PF02770 Acyl-CoA dehydrogenase, middle domain FI878_19235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FI878_19235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FI878_19240 PF00501 AMP-binding enzyme FI878_19240 PF13193 AMP-binding enzyme C-terminal domain FI878_19245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FI878_19245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FI878_19250 PF00171 Aldehyde dehydrogenase family FI878_19260 PF00324 Amino acid permease FI878_19265 PF01042 Endoribonuclease L-PSP FI878_19270 PF00842 Alanine racemase, C-terminal domain FI878_19270 PF01168 Alanine racemase, N-terminal domain FI878_19275 PF01266 FAD dependent oxidoreductase FI878_19280 PF01037 Lrp/AsnC ligand binding domain FI878_19290 PF00593 TonB dependent receptor FI878_19290 PF07715 TonB-dependent Receptor Plug Domain FI878_19305 PF00849 RNA pseudouridylate synthase FI878_19335 PF00694 Aconitase C-terminal domain FI878_19335 PF00330 Aconitase family (aconitate hydratase) FI878_19340 PF00285 Citrate synthase, C-terminal domain FI878_19350 PF00392 Bacterial regulatory proteins, gntR family FI878_19350 PF07729 FCD domain FI878_19360 PF00155 Aminotransferase class I and II FI878_19365 PF01565 FAD binding domain FI878_19365 PF09330 D-lactate dehydrogenase, membrane binding FI878_19370 PF01070 FMN-dependent dehydrogenase FI878_19375 PF07729 FCD domain FI878_19375 PF00392 Bacterial regulatory proteins, gntR family FI878_19380 PF02652 L-lactate permease FI878_19385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FI878_19385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FI878_19385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FI878_19385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FI878_19395 PF16363 GDP-mannose 4,6 dehydratase FI878_19400 PF00342 Phosphoglucose isomerase FI878_19405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FI878_19405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FI878_19405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FI878_19410 PF00483 Nucleotidyl transferase FI878_19415 PF02397 Bacterial sugar transferase FI878_19420 PF00535 Glycosyl transferase family 2 FI878_19445 PF02350 UDP-N-acetylglucosamine 2-epimerase FI878_19450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FI878_19450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FI878_19450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FI878_19455 PF02563 Polysaccharide biosynthesis/export protein FI878_19455 PF10531 SLBB domain FI878_19455 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FI878_19460 PF01451 Low molecular weight phosphotyrosine protein phosphatase FI878_19465 PF13614 AAA domain FI878_19465 PF02706 Chain length determinant protein FI878_19465 PF13807 G-rich domain on putative tyrosine kinase FI878_19470 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FI878_19470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FI878_19475 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FI878_19475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FI878_19480 PF03023 Lipid II flippase MurJ FI878_19485 PF01510 N-acetylmuramoyl-L-alanine amidase FI878_19490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FI878_19490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FI878_19505 PF01138 3' exoribonuclease family, domain 1 FI878_19505 PF03725 3' exoribonuclease family, domain 2 FI878_19510 PF00487 Fatty acid desaturase FI878_19515 PF00175 Oxidoreductase NAD-binding domain FI878_19520 PF00440 Bacterial regulatory proteins, tetR family FI878_19525 PF08360 QacR-like protein, C-terminal region FI878_19525 PF00440 Bacterial regulatory proteins, tetR family FI878_19530 PF01323 DSBA-like thioredoxin domain FI878_19540 PF13419 Haloacid dehalogenase-like hydrolase FI878_19545 PF00106 short chain dehydrogenase FI878_19560 PF00583 Acetyltransferase (GNAT) family FI878_19560 PF00696 Amino acid kinase family FI878_19565 PF09084 NMT1/THI5 like FI878_19570 PF09084 NMT1/THI5 like FI878_19575 PF00296 Luciferase-like monooxygenase FI878_19580 PF00528 Binding-protein-dependent transport system inner membrane component FI878_19585 PF00005 ABC transporter FI878_19590 PF08362 YcdC-like protein, C-terminal region FI878_19590 PF00440 Bacterial regulatory proteins, tetR family FI878_19595 PF01048 Phosphorylase superfamily FI878_19605 PF01687 Riboflavin kinase FI878_19605 PF06574 FAD synthetase FI878_19610 PF08264 Anticodon-binding domain of tRNA FI878_19610 PF06827 Zinc finger found in FPG and IleRS FI878_19610 PF00133 tRNA synthetases class I (I, L, M and V) FI878_19615 PF01252 Signal peptidase (SPase) II FI878_19620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FI878_19660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FI878_19665 PF07859 alpha/beta hydrolase fold FI878_19690 PF01025 GrpE FI878_19695 PF00012 Hsp70 protein FI878_19715 PF13406 Transglycosylase SLT domain FI878_19720 PF02222 ATP-grasp domain FI878_19720 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FI878_19725 PF00731 AIR carboxylase FI878_19740 PF08245 Mur ligase middle domain FI878_19740 PF02875 Mur ligase family, glutamate ligase domain FI878_19740 PF01225 Mur ligase family, catalytic domain FI878_19750 PF01569 PAP2 superfamily FI878_19755 PF03741 Integral membrane protein TerC family FI878_19765 PF03738 Glutathionylspermidine synthase preATP-grasp FI878_19770 PF00355 Rieske [2Fe-2S] domain FI878_19775 PF01979 Amidohydrolase family FI878_19780 PF00156 Phosphoribosyl transferase domain FI878_19790 PF13098 Thioredoxin-like domain FI878_19790 PF10411 Disulfide bond isomerase protein N-terminus FI878_19795 PF01545 Cation efflux family FI878_19795 PF16916 Dimerisation domain of Zinc Transporter FI878_19800 PF02583 Metal-sensitive transcriptional repressor FI878_19805 PF01926 50S ribosome-binding GTPase FI878_19805 PF12631 MnmE helical domain FI878_19805 PF10396 GTP-binding protein TrmE N-terminus FI878_19810 PF14849 YidC periplasmic domain FI878_19810 PF02096 60Kd inner membrane protein FI878_19815 PF01809 Putative membrane protein insertion efficiency factor FI878_19820 PF00825 Ribonuclease P FI878_19825 PF00468 Ribosomal protein L34 FI878_19840 PF00691 OmpA family FI878_19840 PF01389 OmpA-like transmembrane domain FI878_19870 PF02321 Outer membrane efflux protein FI878_19875 PF00005 ABC transporter FI878_19875 PF00664 ABC transporter transmembrane region FI878_19895 PF13737 Transposase DDE domain FI878_19925 PF00589 Phage integrase family FI878_19925 PF13356 Arm DNA-binding domain FI878_19930 PF04151 Bacterial pre-peptidase C-terminal domain FI878_19940 PF16884 N-terminal domain of oxidoreductase FI878_19940 PF00107 Zinc-binding dehydrogenase FI878_19945 PF00440 Bacterial regulatory proteins, tetR family FI878_19945 PF16925 Tetracyclin repressor-like, C-terminal domain FI878_19955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_19965 PF00465 Iron-containing alcohol dehydrogenase FI878_19980 PF00756 Putative esterase FI878_19985 PF08240 Alcohol dehydrogenase GroES-like domain FI878_19985 PF00107 Zinc-binding dehydrogenase FI878_19990 PF02583 Metal-sensitive transcriptional repressor FI878_19995 PF14765 Polyketide synthase dehydratase FI878_19995 PF00698 Acyl transferase domain FI878_19995 PF08240 Alcohol dehydrogenase GroES-like domain FI878_19995 PF16197 Ketoacyl-synthetase C-terminal extension FI878_19995 PF00109 Beta-ketoacyl synthase, N-terminal domain FI878_19995 PF02801 Beta-ketoacyl synthase, C-terminal domain FI878_19995 PF08659 KR domain FI878_19995 PF00550 Phosphopantetheine attachment site FI878_20000 PF08240 Alcohol dehydrogenase GroES-like domain FI878_20000 PF00107 Zinc-binding dehydrogenase FI878_20005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FI878_20005 PF03466 LysR substrate binding domain FI878_20010 PF00106 short chain dehydrogenase FI878_20015 PF08240 Alcohol dehydrogenase GroES-like domain FI878_20015 PF00107 Zinc-binding dehydrogenase FI878_20040 PF01638 HxlR-like helix-turn-helix FI878_20045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FI878_20050 PF05973 Phage derived protein Gp49-like (DUF891) FI878_20090 PF05973 Phage derived protein Gp49-like (DUF891) FI878_20135 PF13737 Transposase DDE domain FI878_20215 PF17762 HTH domain found in ParB protein FI878_20215 PF02195 ParB-like nuclease domain FI878_20220 PF13614 AAA domain