locus-tag class description NDN18_00005 PF00308 Bacterial dnaA protein NDN18_00005 PF08299 Bacterial dnaA protein helix-turn-helix NDN18_00005 PF11638 DnaA N-terminal domain NDN18_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NDN18_00010 PF02767 DNA polymerase III beta subunit, central domain NDN18_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NDN18_00015 PF02463 RecF/RecN/SMC N terminal domain NDN18_00020 PF01751 Toprim domain NDN18_00020 PF18053 DNA gyrase B subunit insert domain NDN18_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_00020 PF00204 DNA gyrase B NDN18_00020 PF00986 DNA gyrase B subunit, carboxyl terminus NDN18_00030 PF09335 SNARE associated Golgi protein NDN18_00035 PF00005 ABC transporter NDN18_00035 PF12848 ABC transporter NDN18_00055 PF01521 Iron-sulphur cluster biosynthesis NDN18_00060 PF00561 alpha/beta hydrolase fold NDN18_00065 PF03702 Anhydro-N-acetylmuramic acid kinase NDN18_00070 PF00579 tRNA synthetases class I (W and Y) NDN18_00115 PF00209 Sodium:neurotransmitter symporter family NDN18_00125 PF01029 NusB family NDN18_00125 PF01189 16S rRNA methyltransferase RsmB/F NDN18_00130 PF02911 Formyl transferase, C-terminal domain NDN18_00130 PF00551 Formyl transferase NDN18_00135 PF00920 Dehydratase family NDN18_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_00150 PF03466 LysR substrate binding domain NDN18_00155 PF00860 Permease family NDN18_00160 PF00311 Phosphoenolpyruvate carboxylase NDN18_00165 PF08361 MAATS-type transcriptional repressor, C-terminal region NDN18_00165 PF00440 Bacterial regulatory proteins, tetR family NDN18_00170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_00175 PF00873 AcrB/AcrD/AcrF family NDN18_00185 PF01556 DnaJ C terminal domain NDN18_00185 PF00226 DnaJ domain NDN18_00185 PF00684 DnaJ central domain NDN18_00195 PF01113 Dihydrodipicolinate reductase, N-terminus NDN18_00195 PF05173 Dihydrodipicolinate reductase, C-terminus NDN18_00205 PF07690 Major Facilitator Superfamily NDN18_00210 PF00248 Aldo/keto reductase family NDN18_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_00215 PF03466 LysR substrate binding domain NDN18_00230 PF00155 Aminotransferase class I and II NDN18_00230 PF00392 Bacterial regulatory proteins, gntR family NDN18_00235 PF00107 Zinc-binding dehydrogenase NDN18_00235 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_00240 PF03352 Methyladenine glycosylase NDN18_00255 PF14815 NUDIX domain NDN18_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN18_00255 PF00633 Helix-hairpin-helix motif NDN18_00255 PF10576 Iron-sulfur binding domain of endonuclease III NDN18_00270 PF07043 Protein of unknown function (DUF1328) NDN18_00275 PF03692 Putative zinc- or iron-chelating domain NDN18_00280 PF07995 Glucose / Sorbosone dehydrogenase NDN18_00285 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_00285 PF16193 AAA C-terminal domain NDN18_00285 PF12002 MgsA AAA+ ATPase C terminal NDN18_00290 PF01226 Formate/nitrite transporter NDN18_00300 PF01259 SAICAR synthetase NDN18_00310 PF00701 Dihydrodipicolinate synthetase family NDN18_00315 PF00857 Isochorismatase family NDN18_00320 PF01758 Sodium Bile acid symporter family NDN18_00325 PF01554 MatE NDN18_00330 PF04463 Protein of unknown function (DUF523) NDN18_00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN18_00345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN18_00350 PF02798 Glutathione S-transferase, N-terminal domain NDN18_00350 PF14497 Glutathione S-transferase, C-terminal domain NDN18_00360 PF00324 Amino acid permease NDN18_00370 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN18_00370 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN18_00380 PF07702 UTRA domain NDN18_00380 PF00392 Bacterial regulatory proteins, gntR family NDN18_00385 PF05962 HutD NDN18_00390 PF17391 Urocanase N-terminal domain NDN18_00390 PF01175 Urocanase Rossmann-like domain NDN18_00390 PF17392 Urocanase C-terminal domain NDN18_00395 PF00221 Aromatic amino acid lyase NDN18_00400 PF00324 Amino acid permease NDN18_00405 PF01979 Amidohydrolase family NDN18_00410 PF00491 Arginase family NDN18_00420 PF13419 Haloacid dehalogenase-like hydrolase NDN18_00425 PF01177 Asp/Glu/Hydantoin racemase NDN18_00430 PF01380 SIS domain NDN18_00435 PF14602 Hexapeptide repeat of succinyl-transferase NDN18_00435 PF12804 MobA-like NTP transferase domain NDN18_00435 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_00440 PF04608 Phosphatidylglycerophosphatase A NDN18_00445 PF02769 AIR synthase related protein, C-terminal domain NDN18_00445 PF00586 AIR synthase related protein, N-terminal domain NDN18_00450 PF01029 NusB family NDN18_00455 PF00885 6,7-dimethyl-8-ribityllumazine synthase NDN18_00460 PF00925 GTP cyclohydrolase II NDN18_00460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN18_00485 PF02580 D-Tyr-tRNA(Tyr) deacylase NDN18_00490 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NDN18_00490 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN18_00495 PF00581 Rhodanese-like domain NDN18_00500 PF02666 Phosphatidylserine decarboxylase NDN18_00510 PF11808 Phosphate regulon sensor protein PhoR NDN18_00510 PF00989 PAS fold NDN18_00510 PF00512 His Kinase A (phospho-acceptor) domain NDN18_00510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_00515 PF00486 Transcriptional regulatory protein, C terminal NDN18_00515 PF00072 Response regulator receiver domain NDN18_00525 PF00106 short chain dehydrogenase NDN18_00530 PF01554 MatE NDN18_00535 PF00155 Aminotransferase class I and II NDN18_00540 PF04286 Protein of unknown function (DUF445) NDN18_00555 PF04262 Glutamate-cysteine ligase NDN18_00560 PF02600 Disulfide bond formation protein DsbB NDN18_00565 PF13296 Putative type VI secretion system Rhs element Vgr NDN18_00565 PF04717 Type VI secretion system, phage-baseplate injector NDN18_00565 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN18_00570 PF01471 Putative peptidoglycan binding domain NDN18_00570 PF01476 LysM domain NDN18_00570 PF01510 N-acetylmuramoyl-L-alanine amidase NDN18_00615 PF05728 Uncharacterised protein family (UPF0227) NDN18_00620 PF01751 Toprim domain NDN18_00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_00620 PF00986 DNA gyrase B subunit, carboxyl terminus NDN18_00620 PF00204 DNA gyrase B NDN18_00625 PF00106 short chain dehydrogenase NDN18_00630 PF04115 Ureidoglycolate lyase NDN18_00635 PF03561 Allantoicase repeat NDN18_00640 PF01494 FAD binding domain NDN18_00650 PF00860 Permease family NDN18_00655 PF00576 HIUase/Transthyretin family NDN18_00685 PF02683 Cytochrome C biogenesis protein transmembrane region NDN18_00685 PF11412 Disulphide bond corrector protein DsbC NDN18_00690 PF00990 Diguanylate cyclase, GGDEF domain NDN18_00690 PF07694 5TMR of 5TMR-LYT NDN18_00695 PF07859 alpha/beta hydrolase fold NDN18_00705 PF03960 ArsC family NDN18_00710 PF03372 Endonuclease/Exonuclease/phosphatase family NDN18_00715 PF00156 Phosphoribosyl transferase domain NDN18_00725 PF07715 TonB-dependent Receptor Plug Domain NDN18_00725 PF00593 TonB dependent receptor NDN18_00735 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NDN18_00735 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NDN18_00740 PF04101 Glycosyltransferase family 28 C-terminal domain NDN18_00740 PF03033 Glycosyltransferase family 28 N-terminal domain NDN18_00745 PF02875 Mur ligase family, glutamate ligase domain NDN18_00745 PF08245 Mur ligase middle domain NDN18_00745 PF01225 Mur ligase family, catalytic domain NDN18_00750 PF07478 D-ala D-ala ligase C-terminus NDN18_00750 PF01820 D-ala D-ala ligase N-terminus NDN18_00755 PF03799 Cell division protein FtsQ NDN18_00755 PF08478 POTRA domain, FtsQ-type NDN18_00760 PF02491 SHS2 domain inserted in FTSA NDN18_00765 PF12327 FtsZ family, C-terminal domain NDN18_00765 PF00091 Tubulin/FtsZ family, GTPase domain NDN18_00770 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NDN18_00780 PF01551 Peptidase family M23 NDN18_00785 PF17831 Pyruvate dehydrogenase E1 component middle domain NDN18_00785 PF00456 Transketolase, thiamine diphosphate binding domain NDN18_00790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN18_00790 PF00364 Biotin-requiring enzyme NDN18_00790 PF02817 e3 binding domain NDN18_00800 PF01169 Uncharacterized protein family UPF0016 NDN18_00820 PF01613 Flavin reductase like domain NDN18_00820 PF00258 Flavodoxin NDN18_00825 PF03692 Putative zinc- or iron-chelating domain NDN18_00830 PF00478 IMP dehydrogenase / GMP reductase domain NDN18_00830 PF00571 CBS domain NDN18_00835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN18_00835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN18_00835 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN18_00835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN18_00840 PF01243 Pyridoxamine 5'-phosphate oxidase NDN18_00840 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NDN18_00845 PF01368 DHH family NDN18_00845 PF02272 DHHA1 domain NDN18_00845 PF17768 RecJ OB domain NDN18_00870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN18_00875 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NDN18_00895 PF00924 Mechanosensitive ion channel NDN18_00905 PF00501 AMP-binding enzyme NDN18_00905 PF13193 AMP-binding enzyme C-terminal domain NDN18_00905 PF16177 Acetyl-coenzyme A synthetase N-terminus NDN18_00910 PF00857 Isochorismatase family NDN18_00915 PF01037 Lrp/AsnC ligand binding domain NDN18_00920 PF00296 Luciferase-like monooxygenase NDN18_00925 PF03358 NADPH-dependent FMN reductase NDN18_00930 PF00072 Response regulator receiver domain NDN18_00930 PF00196 Bacterial regulatory proteins, luxR family NDN18_00940 PF00672 HAMP domain NDN18_00940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_00940 PF00512 His Kinase A (phospho-acceptor) domain NDN18_00940 PF01627 Hpt domain NDN18_00940 PF00072 Response regulator receiver domain NDN18_00945 PF04341 Protein of unknown function, DUF485 NDN18_00950 PF00474 Sodium:solute symporter family NDN18_00960 PF02028 BCCT, betaine/carnitine/choline family transporter NDN18_00970 PF00990 Diguanylate cyclase, GGDEF domain NDN18_00975 PF17755 UvrA DNA-binding domain NDN18_00975 PF17760 UvrA interaction domain NDN18_00980 PF16925 Tetracyclin repressor-like, C-terminal domain NDN18_00980 PF00440 Bacterial regulatory proteins, tetR family NDN18_00985 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_00985 PF00107 Zinc-binding dehydrogenase NDN18_00995 PF06942 GlpM protein NDN18_01000 PF08543 Phosphomethylpyrimidine kinase NDN18_01000 PF03070 TENA/THI-4/PQQC family NDN18_01000 PF02581 Thiamine monophosphate synthase NDN18_01010 PF07690 Major Facilitator Superfamily NDN18_01015 PF00436 Single-strand binding protein family NDN18_01025 PF03591 AzlC protein NDN18_01035 PF00324 Amino acid permease NDN18_01040 PF00392 Bacterial regulatory proteins, gntR family NDN18_01040 PF00155 Aminotransferase class I and II NDN18_01045 PF00202 Aminotransferase class-III NDN18_01050 PF00171 Aldehyde dehydrogenase family NDN18_01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_01060 PF00857 Isochorismatase family NDN18_01065 PF02678 Pirin NDN18_01065 PF05726 Pirin C-terminal cupin domain NDN18_01070 PF01593 Flavin containing amine oxidoreductase NDN18_01090 PF07690 Major Facilitator Superfamily NDN18_01095 PF03466 LysR substrate binding domain NDN18_01095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_01115 PF00248 Aldo/keto reductase family NDN18_01120 PF02311 AraC-like ligand binding domain NDN18_01120 PF12833 Helix-turn-helix domain NDN18_01135 PF01638 HxlR-like helix-turn-helix NDN18_01165 PF01638 HxlR-like helix-turn-helix NDN18_01170 PF02525 Flavodoxin-like fold NDN18_01205 PF02705 K+ potassium transporter NDN18_01230 PF00230 Major intrinsic protein NDN18_01245 PF00977 Histidine biosynthesis protein NDN18_01250 PF01636 Phosphotransferase enzyme family NDN18_01265 PF03992 Antibiotic biosynthesis monooxygenase NDN18_01280 PF00005 ABC transporter NDN18_01280 PF00664 ABC transporter transmembrane region NDN18_01285 PF00977 Histidine biosynthesis protein NDN18_01300 PF00117 Glutamine amidotransferase class-I NDN18_01305 PF00475 Imidazoleglycerol-phosphate dehydratase NDN18_01325 PF00583 Acetyltransferase (GNAT) family NDN18_01330 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NDN18_01330 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NDN18_01340 PF00512 His Kinase A (phospho-acceptor) domain NDN18_01340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_01340 PF00672 HAMP domain NDN18_01345 PF00072 Response regulator receiver domain NDN18_01345 PF00486 Transcriptional regulatory protein, C terminal NDN18_01350 PF16921 Tex protein YqgF-like domain NDN18_01350 PF00575 S1 RNA binding domain NDN18_01350 PF17674 HHH domain NDN18_01350 PF09371 Tex-like protein N-terminal domain NDN18_01355 PF01740 STAS domain NDN18_01355 PF00916 Sulfate permease family NDN18_01360 PF00106 short chain dehydrogenase NDN18_01365 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN18_01370 PF00005 ABC transporter NDN18_01370 PF12848 ABC transporter NDN18_01395 PF04191 Phospholipid methyltransferase NDN18_01415 PF00529 HlyD membrane-fusion protein of T1SS NDN18_01415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_01420 PF00873 AcrB/AcrD/AcrF family NDN18_01425 PF01545 Cation efflux family NDN18_01455 PF00324 Amino acid permease NDN18_01470 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN18_01485 PF01795 MraW methylase family NDN18_01495 PF03717 Penicillin-binding Protein dimerisation domain NDN18_01495 PF00905 Penicillin binding protein transpeptidase domain NDN18_01500 PF01225 Mur ligase family, catalytic domain NDN18_01500 PF02875 Mur ligase family, glutamate ligase domain NDN18_01500 PF08245 Mur ligase middle domain NDN18_01505 PF02875 Mur ligase family, glutamate ligase domain NDN18_01505 PF08245 Mur ligase middle domain NDN18_01505 PF01225 Mur ligase family, catalytic domain NDN18_01510 PF00953 Glycosyl transferase family 4 NDN18_01520 PF13847 Methyltransferase domain NDN18_01525 PF00905 Penicillin binding protein transpeptidase domain NDN18_01525 PF00912 Transglycosylase NDN18_01525 PF17092 Penicillin-binding protein OB-like domain NDN18_01530 PF11104 Type IV pilus assembly protein PilM; NDN18_01535 PF05137 Fimbrial assembly protein (PilN) NDN18_01540 PF04350 Pilus assembly protein, PilO NDN18_01550 PF07660 Secretin and TonB N terminus short domain NDN18_01550 PF03958 Bacterial type II/III secretion system short domain NDN18_01550 PF00263 Bacterial type II and III secretion system protein NDN18_01550 PF11741 AMIN domain NDN18_01555 PF01202 Shikimate kinase NDN18_01560 PF01761 3-dehydroquinate synthase NDN18_01570 PF00310 Glutamine amidotransferases class-II NDN18_01570 PF04898 Glutamate synthase central domain NDN18_01570 PF01645 Conserved region in glutamate synthase NDN18_01570 PF01493 GXGXG motif NDN18_01575 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN18_01575 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_01585 PF04011 LemA family NDN18_01590 PF04536 TPM domain NDN18_01600 PF00114 Pilin (bacterial filament) NDN18_01600 PF07963 Prokaryotic N-terminal methylation motif NDN18_01605 PF04932 O-Antigen ligase NDN18_01605 PF11846 Virulence factor membrane-bound polymerase, C-terminal NDN18_01605 PF15864 Protein glycosylation ligase NDN18_01610 PF00210 Ferritin-like domain NDN18_01615 PF04324 BFD-like [2Fe-2S] binding domain NDN18_01620 PF01042 Endoribonuclease L-PSP NDN18_01625 PF13291 ACT domain NDN18_01625 PF04607 Region found in RelA / SpoT proteins NDN18_01625 PF02824 TGS domain NDN18_01635 PF01192 RNA polymerase Rpb6 NDN18_01640 PF00625 Guanylate kinase NDN18_01645 PF02401 LytB protein NDN18_01685 PF00886 Ribosomal protein S16 NDN18_01690 PF01782 RimM N-terminal domain NDN18_01690 PF05239 PRC-barrel domain NDN18_01695 PF01746 tRNA (Guanine-1)-methyltransferase NDN18_01700 PF01245 Ribosomal protein L19 NDN18_01705 PF00561 alpha/beta hydrolase fold NDN18_01715 PF09157 Pseudouridine synthase II TruB, C-terminal NDN18_01715 PF16198 tRNA pseudouridylate synthase B C-terminal domain NDN18_01715 PF01509 TruB family pseudouridylate synthase (N terminal domain) NDN18_01720 PF01925 Sulfite exporter TauE/SafE NDN18_01730 PF00892 EamA-like transporter family NDN18_01735 PF00892 EamA-like transporter family NDN18_01740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN18_01740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN18_01745 PF02913 FAD linked oxidases, C-terminal domain NDN18_01745 PF01565 FAD binding domain NDN18_01755 PF03992 Antibiotic biosynthesis monooxygenase NDN18_01760 PF02525 Flavodoxin-like fold NDN18_01770 PF07690 Major Facilitator Superfamily NDN18_01775 PF12805 FUSC-like inner membrane protein yccS NDN18_01780 PF00080 Copper/zinc superoxide dismutase (SODC) NDN18_01785 PF01594 AI-2E family transporter NDN18_01790 PF13614 AAA domain NDN18_01810 PF08241 Methyltransferase domain NDN18_01820 PF00324 Amino acid permease NDN18_01825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN18_01825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN18_01830 PF00202 Aminotransferase class-III NDN18_01835 PF04958 Arginine N-succinyltransferase beta subunit NDN18_01840 PF00171 Aldehyde dehydrogenase family NDN18_01845 PF04996 Succinylarginine dihydrolase NDN18_01850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NDN18_01865 PF00082 Subtilase family NDN18_01865 PF05922 Peptidase inhibitor I9 NDN18_01880 PF03466 LysR substrate binding domain NDN18_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_01900 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system NDN18_01905 PF05746 DALR anticodon binding domain NDN18_01905 PF02092 Glycyl-tRNA synthetase beta subunit NDN18_01910 PF02091 Glycyl-tRNA synthetase alpha subunit NDN18_01935 PF00571 CBS domain NDN18_01940 PF04024 PspC domain NDN18_01950 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN18_01950 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_01950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_01950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_01960 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NDN18_01960 PF01488 Shikimate / quinate 5-dehydrogenase NDN18_01960 PF08501 Shikimate dehydrogenase substrate binding domain NDN18_01965 PF01218 Coproporphyrinogen III oxidase NDN18_01970 PF00925 GTP cyclohydrolase II NDN18_01975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NDN18_01975 PF02779 Transketolase, pyrimidine binding domain NDN18_01975 PF02780 Transketolase, C-terminal domain NDN18_01980 PF00459 Inositol monophosphatase family NDN18_01985 PF03880 DbpA RNA binding domain NDN18_01985 PF00270 DEAD/DEAH box helicase NDN18_01985 PF00271 Helicase conserved C-terminal domain NDN18_01985 PF12343 Cold shock protein DEAD box A NDN18_01995 PF00005 ABC transporter NDN18_02000 PF02405 Permease MlaE NDN18_02010 PF05494 MlaC protein NDN18_02020 PF01544 CorA-like Mg2+ transporter protein NDN18_02025 PF03641 Possible lysine decarboxylase NDN18_02030 PF00293 NUDIX domain NDN18_02035 PF00156 Phosphoribosyl transferase domain NDN18_02040 PF00270 DEAD/DEAH box helicase NDN18_02040 PF00271 Helicase conserved C-terminal domain NDN18_02040 PF17191 RecG wedge domain NDN18_02055 PF01553 Acyltransferase NDN18_02065 PF00375 Sodium:dicarboxylate symporter family NDN18_02075 PF01926 50S ribosome-binding GTPase NDN18_02080 PF02082 Transcriptional regulator NDN18_02085 PF00970 Oxidoreductase FAD-binding domain NDN18_02085 PF00042 Globin NDN18_02085 PF00175 Oxidoreductase NAD-binding domain NDN18_02095 PF05872 Bacterial protein of unknown function (DUF853) NDN18_02100 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN18_02105 PF00117 Glutamine amidotransferase class-I NDN18_02110 PF00338 Ribosomal protein S10p/S20e NDN18_02115 PF00297 Ribosomal protein L3 NDN18_02120 PF00573 Ribosomal protein L4/L1 family NDN18_02125 PF00276 Ribosomal protein L23 NDN18_02130 PF00181 Ribosomal Proteins L2, RNA binding domain NDN18_02130 PF03947 Ribosomal Proteins L2, C-terminal domain NDN18_02135 PF00203 Ribosomal protein S19 NDN18_02140 PF00237 Ribosomal protein L22p/L17e NDN18_02150 PF00252 Ribosomal protein L16p/L10e NDN18_02155 PF00831 Ribosomal L29 protein NDN18_02160 PF00366 Ribosomal protein S17 NDN18_02165 PF00238 Ribosomal protein L14p/L23e NDN18_02170 PF00467 KOW motif NDN18_02170 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NDN18_02175 PF00281 Ribosomal protein L5 NDN18_02175 PF00673 ribosomal L5P family C-terminus NDN18_02180 PF00253 Ribosomal protein S14p/S29e NDN18_02185 PF00410 Ribosomal protein S8 NDN18_02190 PF00347 Ribosomal protein L6 NDN18_02195 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NDN18_02200 PF03719 Ribosomal protein S5, C-terminal domain NDN18_02200 PF00333 Ribosomal protein S5, N-terminal domain NDN18_02205 PF00327 Ribosomal protein L30p/L7e NDN18_02210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NDN18_02215 PF00344 SecY translocase NDN18_02220 PF00444 Ribosomal protein L36 NDN18_02225 PF00416 Ribosomal protein S13/S18 NDN18_02230 PF00411 Ribosomal protein S11 NDN18_02235 PF00163 Ribosomal protein S4/S9 N-terminal domain NDN18_02235 PF01479 S4 domain NDN18_02240 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NDN18_02240 PF01000 RNA polymerase Rpb3/RpoA insert domain NDN18_02240 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NDN18_02245 PF01196 Ribosomal protein L17 NDN18_02250 PF00743 Flavin-binding monooxygenase-like NDN18_02255 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_02255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_02255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_02260 PF03937 Flavinator of succinate dehydrogenase NDN18_02290 PF09526 Probable metal-binding protein (DUF2387) NDN18_02295 PF01432 Peptidase family M3 NDN18_02300 PF00773 RNB domain NDN18_02300 PF08206 Ribonuclease B OB domain NDN18_02300 PF08461 Ribonuclease R winged-helix domain NDN18_02300 PF17876 Cold shock domain NDN18_02300 PF00575 S1 RNA binding domain NDN18_02345 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN18_02350 PF12833 Helix-turn-helix domain NDN18_02355 PF00892 EamA-like transporter family NDN18_02360 PF03631 Virulence factor BrkB NDN18_02365 PF03358 NADPH-dependent FMN reductase NDN18_02390 PF02130 Uncharacterized protein family UPF0054 NDN18_02395 PF02562 PhoH-like protein NDN18_02400 PF04055 Radical SAM superfamily NDN18_02400 PF01938 TRAM domain NDN18_02400 PF00919 Uncharacterized protein family UPF0004 NDN18_02405 PF01551 Peptidase family M23 NDN18_02405 PF10145 Phage-related minor tail protein NDN18_02405 PF01464 Transglycosylase SLT domain NDN18_02415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NDN18_02415 PF00056 lactate/malate dehydrogenase, NAD binding domain NDN18_02435 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NDN18_02440 PF01066 CDP-alcohol phosphatidyltransferase NDN18_02485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_02485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_02485 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_02490 PF00440 Bacterial regulatory proteins, tetR family NDN18_02490 PF17932 Tetracyclin repressor-like, C-terminal domain NDN18_02505 PF01039 Carboxyl transferase domain NDN18_02510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_02510 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_02510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_02520 PF02785 Biotin carboxylase C-terminal domain NDN18_02520 PF00289 Biotin carboxylase, N-terminal domain NDN18_02520 PF00364 Biotin-requiring enzyme NDN18_02520 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN18_02530 PF04386 Stringent starvation protein B NDN18_02535 PF00043 Glutathione S-transferase, C-terminal domain NDN18_02535 PF13417 Glutathione S-transferase, N-terminal domain NDN18_02540 PF00380 Ribosomal protein S9/S16 NDN18_02545 PF00572 Ribosomal protein L13 NDN18_02550 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NDN18_02555 PF00398 Ribosomal RNA adenine dimethylase NDN18_02560 PF00149 Calcineurin-like phosphoesterase NDN18_02580 PF13167 GTP-binding GTPase N-terminal NDN18_02580 PF01926 50S ribosome-binding GTPase NDN18_02580 PF16360 GTP-binding GTPase Middle Region NDN18_02590 PF13091 PLD-like domain NDN18_02595 PF10518 TAT (twin-arginine translocation) pathway signal sequence NDN18_02595 PF00149 Calcineurin-like phosphoesterase NDN18_02600 PF01389 OmpA-like transmembrane domain NDN18_02600 PF00691 OmpA family NDN18_02605 PF17152 Periplasmic sensor domain NDN18_02605 PF00990 Diguanylate cyclase, GGDEF domain NDN18_02640 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_02640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN18_02650 PF04273 Putative phosphatase (DUF442) NDN18_02650 PF00753 Metallo-beta-lactamase superfamily NDN18_02655 PF00561 alpha/beta hydrolase fold NDN18_02660 PF00085 Thioredoxin NDN18_02665 PF03061 Thioesterase superfamily NDN18_02675 PF04461 Protein of unknown function (DUF520) NDN18_02685 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NDN18_02685 PF01266 FAD dependent oxidoreductase NDN18_02695 PF03795 YCII-related domain NDN18_02700 PF04279 Intracellular septation protein A NDN18_02705 PF02811 PHP domain NDN18_02710 PF01062 Bestrophin, RFP-TM, chloride channel NDN18_02715 PF04002 RadC-like JAB domain NDN18_02720 PF04127 DNA / pantothenate metabolism flavoprotein NDN18_02720 PF02441 Flavoprotein NDN18_02725 PF07549 SecD/SecF GG Motif NDN18_02725 PF02355 Protein export membrane protein NDN18_02730 PF07549 SecD/SecF GG Motif NDN18_02730 PF13721 SecD export protein N-terminal TM region NDN18_02730 PF02355 Protein export membrane protein NDN18_02735 PF02699 Preprotein translocase subunit NDN18_02740 PF01702 Queuine tRNA-ribosyltransferase NDN18_02755 PF02547 Queuosine biosynthesis protein NDN18_02770 PF03710 Glutamate-ammonia ligase adenylyltransferase NDN18_02770 PF08335 GlnD PII-uridylyltransferase NDN18_02775 PF01063 Amino-transferase class IV NDN18_02785 PF01522 Polysaccharide deacetylase NDN18_02800 PF16363 GDP-mannose 4,6 dehydratase NDN18_02805 PF04321 RmlD substrate binding domain NDN18_02810 PF00483 Nucleotidyl transferase NDN18_02815 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase NDN18_02820 PF00535 Glycosyl transferase family 2 NDN18_02835 PF02938 GAD domain NDN18_02835 PF00152 tRNA synthetases class II (D, K and N) NDN18_02835 PF01336 OB-fold nucleic acid binding domain NDN18_02845 PF07715 TonB-dependent Receptor Plug Domain NDN18_02845 PF00593 TonB dependent receptor NDN18_02865 PF06146 Phosphate-starvation-inducible E NDN18_02870 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN18_02870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_02870 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_02870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_02875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_02875 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN18_02875 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_02875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_02885 PF00672 HAMP domain NDN18_02885 PF00512 His Kinase A (phospho-acceptor) domain NDN18_02885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_02890 PF00486 Transcriptional regulatory protein, C terminal NDN18_02890 PF00072 Response regulator receiver domain NDN18_02895 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NDN18_02915 PF01923 Cobalamin adenosyltransferase NDN18_02920 PF00593 TonB dependent receptor NDN18_02920 PF07715 TonB-dependent Receptor Plug Domain NDN18_02925 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NDN18_02930 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_02955 PF00290 Tryptophan synthase alpha chain NDN18_02960 PF01039 Carboxyl transferase domain NDN18_02965 PF08245 Mur ligase middle domain NDN18_02965 PF02875 Mur ligase family, glutamate ligase domain NDN18_02980 PF00753 Metallo-beta-lactamase superfamily NDN18_02985 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN18_02985 PF00578 AhpC/TSA family NDN18_02990 PF01043 SecA preprotein cross-linking domain NDN18_02990 PF07517 SecA DEAD-like domain NDN18_02990 PF07516 SecA Wing and Scaffold domain NDN18_02990 PF02810 SEC-C motif NDN18_03000 PF07690 Major Facilitator Superfamily NDN18_03000 PF00083 Sugar (and other) transporter NDN18_03005 PF03006 Haemolysin-III related NDN18_03015 PF13673 Acetyltransferase (GNAT) domain NDN18_03030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN18_03030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN18_03030 PF00378 Enoyl-CoA hydratase/isomerase NDN18_03035 PF02803 Thiolase, C-terminal domain NDN18_03035 PF00108 Thiolase, N-terminal domain NDN18_03040 PF02311 AraC-like ligand binding domain NDN18_03040 PF12833 Helix-turn-helix domain NDN18_03045 PF02515 CoA-transferase family III NDN18_03050 PF04966 Carbohydrate-selective porin, OprB family NDN18_03055 PF01011 PQQ enzyme repeat NDN18_03060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN18_03060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN18_03070 PF00893 Small Multidrug Resistance protein NDN18_03080 PF02803 Thiolase, C-terminal domain NDN18_03080 PF00108 Thiolase, N-terminal domain NDN18_03090 PF13505 Outer membrane protein beta-barrel domain NDN18_03090 PF00691 OmpA family NDN18_03100 PF01139 tRNA-splicing ligase RtcB NDN18_03105 PF00324 Amino acid permease NDN18_03110 PF05175 Methyltransferase small domain NDN18_03110 PF08468 Methyltransferase small domain N-terminal NDN18_03115 PF00860 Permease family NDN18_03120 PF00679 Elongation factor G C-terminus NDN18_03120 PF00009 Elongation factor Tu GTP binding domain NDN18_03120 PF03144 Elongation factor Tu domain 2 NDN18_03125 PF01741 Large-conductance mechanosensitive channel, MscL NDN18_03140 PF06827 Zinc finger found in FPG and IleRS NDN18_03140 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDN18_03140 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDN18_03145 PF02245 Methylpurine-DNA glycosylase (MPG) NDN18_03150 PF07715 TonB-dependent Receptor Plug Domain NDN18_03150 PF00593 TonB dependent receptor NDN18_03155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN18_03170 PF13098 Thioredoxin-like domain NDN18_03170 PF10411 Disulfide bond isomerase protein N-terminus NDN18_03175 PF01571 Aminomethyltransferase folate-binding domain NDN18_03185 PF04343 Protein of unknown function, DUF488 NDN18_03190 PF08274 PhnA Zinc-Ribbon NDN18_03190 PF03831 PhnA domain NDN18_03195 PF07411 Domain of unknown function (DUF1508) NDN18_03200 PF03129 Anticodon binding domain NDN18_03200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN18_03200 PF04073 Aminoacyl-tRNA editing domain NDN18_03205 PF00873 AcrB/AcrD/AcrF family NDN18_03220 PF00072 Response regulator receiver domain NDN18_03225 PF00072 Response regulator receiver domain NDN18_03230 PF01584 CheW-like domain NDN18_03235 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NDN18_03235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDN18_03240 PF01627 Hpt domain NDN18_03240 PF01584 CheW-like domain NDN18_03240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_03240 PF00072 Response regulator receiver domain NDN18_03250 PF07687 Peptidase dimerisation domain NDN18_03250 PF01546 Peptidase family M20/M25/M40 NDN18_03255 PF08085 Entericidin EcnA/B family NDN18_03265 PF04304 Protein of unknown function (DUF454) NDN18_03270 PF17969 L,D-transpeptidase C-terminal domain NDN18_03270 PF03734 L,D-transpeptidase catalytic domain NDN18_03310 PF00175 Oxidoreductase NAD-binding domain NDN18_03310 PF00258 Flavodoxin NDN18_03310 PF00667 FAD binding domain NDN18_03320 PF12805 FUSC-like inner membrane protein yccS NDN18_03325 PF07690 Major Facilitator Superfamily NDN18_03330 PF00881 Nitroreductase family NDN18_03345 PF01235 Sodium:alanine symporter family NDN18_03350 PF01734 Patatin-like phospholipase NDN18_03355 PF13291 ACT domain NDN18_03355 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_03360 PF05992 SbmA/BacA-like family NDN18_03365 PF05649 Peptidase family M13 NDN18_03365 PF01431 Peptidase family M13 NDN18_03390 PF02934 GatB/GatE catalytic domain NDN18_03390 PF02637 GatB domain NDN18_03395 PF01425 Amidase NDN18_03400 PF02686 Glu-tRNAGln amidotransferase C subunit NDN18_03410 PF04085 rod shape-determining protein MreC NDN18_03415 PF04093 rod shape-determining protein MreD NDN18_03420 PF02545 Maf-like protein NDN18_03425 PF10150 Ribonuclease E/G family NDN18_03425 PF00575 S1 RNA binding domain NDN18_03435 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NDN18_03435 PF06974 Protein of unknown function (DUF1298) NDN18_03440 PF01507 Phosphoadenosine phosphosulfate reductase family NDN18_03455 PF02525 Flavodoxin-like fold NDN18_03475 PF02673 Bacitracin resistance protein BacA NDN18_03480 PF12833 Helix-turn-helix domain NDN18_03480 PF06719 AraC-type transcriptional regulator N-terminus NDN18_03485 PF14765 Polyketide synthase dehydratase NDN18_03485 PF00550 Phosphopantetheine attachment site NDN18_03485 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN18_03485 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN18_03485 PF16197 Ketoacyl-synthetase C-terminal extension NDN18_03485 PF08659 KR domain NDN18_03485 PF08990 Erythronolide synthase docking NDN18_03485 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_03485 PF00698 Acyl transferase domain NDN18_03485 PF09277 Erythronolide synthase, docking NDN18_03490 PF01965 DJ-1/PfpI family NDN18_03500 PF00324 Amino acid permease NDN18_03505 PF04303 PrpF protein NDN18_03510 PF00348 Polyprenyl synthetase NDN18_03515 PF04237 YjbR NDN18_03520 PF01145 SPFH domain / Band 7 family NDN18_03530 PF01734 Patatin-like phospholipase NDN18_03550 PF00884 Sulfatase NDN18_03550 PF08019 Phosphoethanolamine transferase EptA/EptB NDN18_03555 PF00486 Transcriptional regulatory protein, C terminal NDN18_03555 PF00072 Response regulator receiver domain NDN18_03560 PF00512 His Kinase A (phospho-acceptor) domain NDN18_03560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_03560 PF08521 Two-component sensor kinase N-terminal NDN18_03570 PF00909 Ammonium Transporter Family NDN18_03575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_03575 PF03466 LysR substrate binding domain NDN18_03595 PF08264 Anticodon-binding domain of tRNA NDN18_03595 PF00133 tRNA synthetases class I (I, L, M and V) NDN18_03595 PF10458 Valyl tRNA synthetase tRNA binding arm NDN18_03615 PF01906 Putative heavy-metal-binding NDN18_03620 PF01906 Putative heavy-metal-binding NDN18_03625 PF02321 Outer membrane efflux protein NDN18_03630 PF00873 AcrB/AcrD/AcrF family NDN18_03635 PF00529 HlyD membrane-fusion protein of T1SS NDN18_03635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_03640 PF01569 PAP2 superfamily NDN18_03650 PF00348 Polyprenyl synthetase NDN18_03660 PF00829 Ribosomal prokaryotic L21 protein NDN18_03665 PF01016 Ribosomal L27 protein NDN18_03670 PF03548 Outer membrane lipoprotein carrier protein LolA NDN18_03680 PF02403 Seryl-tRNA synthetase N-terminal domain NDN18_03680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN18_03685 PF14824 Sirohaem biosynthesis protein central NDN18_03685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN18_03685 PF10414 Sirohaem synthase dimerisation region NDN18_03690 PF00588 SpoU rRNA Methylase family NDN18_03695 PF01638 HxlR-like helix-turn-helix NDN18_03700 PF03358 NADPH-dependent FMN reductase NDN18_03705 PF13520 Amino acid permease NDN18_03710 PF00465 Iron-containing alcohol dehydrogenase NDN18_03720 PF03099 Biotin/lipoate A/B protein ligase family NDN18_03725 PF04359 Protein of unknown function (DUF493) NDN18_03730 PF04542 Sigma-70 region 2 NDN18_03730 PF04539 Sigma-70 region 3 NDN18_03730 PF04545 Sigma-70, region 4 NDN18_03730 PF00140 Sigma-70 factor, region 1.2 NDN18_03730 PF04546 Sigma-70, non-essential region NDN18_03730 PF03979 Sigma-70 factor, region 1.1 NDN18_03745 PF00581 Rhodanese-like domain NDN18_03745 PF17773 UPF0176 acylphosphatase like domain NDN18_03755 PF00285 Citrate synthase, C-terminal domain NDN18_03760 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN18_03765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN18_03770 PF02910 Fumarate reductase flavoprotein C-term NDN18_03770 PF00890 FAD binding domain NDN18_03775 PF13085 2Fe-2S iron-sulfur cluster binding domain NDN18_03790 PF02779 Transketolase, pyrimidine binding domain NDN18_03790 PF16870 2-oxoglutarate dehydrogenase C-terminal NDN18_03790 PF16078 2-oxoglutarate dehydrogenase N-terminus NDN18_03790 PF00676 Dehydrogenase E1 component NDN18_03795 PF00364 Biotin-requiring enzyme NDN18_03795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN18_03795 PF02817 e3 binding domain NDN18_03800 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_03800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN18_03805 PF00549 CoA-ligase NDN18_03805 PF08442 ATP-grasp domain NDN18_03810 PF00549 CoA-ligase NDN18_03810 PF02629 CoA binding domain NDN18_03815 PF00579 tRNA synthetases class I (W and Y) NDN18_03820 PF05661 Protein of unknown function (DUF808) NDN18_03825 PF04228 Putative neutral zinc metallopeptidase NDN18_03830 PF00999 Sodium/hydrogen exchanger family NDN18_03845 PF09587 Bacterial capsule synthesis protein PGA_cap NDN18_03855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN18_03860 PF00582 Universal stress protein family NDN18_03865 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_03870 PF03449 Transcription elongation factor, N-terminal NDN18_03870 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN18_03875 PF02142 MGS-like domain NDN18_03875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NDN18_03875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN18_03880 PF00117 Glutamine amidotransferase class-I NDN18_03880 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN18_03895 PF01985 CRS1 / YhbY (CRM) domain NDN18_03900 PF01728 FtsJ-like methyltransferase NDN18_03905 PF01434 Peptidase family M41 NDN18_03905 PF06480 FtsH Extracellular NDN18_03905 PF17862 AAA+ lid domain NDN18_03905 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_03910 PF00809 Pterin binding enzyme NDN18_03930 PF09423 PhoD-like phosphatase NDN18_03930 PF16655 PhoD-like phosphatase, N-terminal domain NDN18_03945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NDN18_03945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NDN18_03960 PF00083 Sugar (and other) transporter NDN18_03965 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDN18_03965 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDN18_03970 PF01266 FAD dependent oxidoreductase NDN18_03970 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NDN18_03975 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NDN18_03975 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NDN18_03980 PF00781 Diacylglycerol kinase catalytic domain NDN18_03985 PF00149 Calcineurin-like phosphoesterase NDN18_03990 PF00166 Chaperonin 10 Kd subunit NDN18_03995 PF00118 TCP-1/cpn60 chaperonin family NDN18_04000 PF01219 Prokaryotic diacylglycerol kinase NDN18_04010 PF03009 Glycerophosphoryl diester phosphodiesterase family NDN18_04015 PF00873 AcrB/AcrD/AcrF family NDN18_04025 PF01435 Peptidase family M48 NDN18_04030 PF01464 Transglycosylase SLT domain NDN18_04035 PF01171 PP-loop family NDN18_04045 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN18_04045 PF01464 Transglycosylase SLT domain NDN18_04050 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN18_04050 PF03449 Transcription elongation factor, N-terminal NDN18_04065 PF00501 AMP-binding enzyme NDN18_04065 PF13193 AMP-binding enzyme C-terminal domain NDN18_04065 PF00668 Condensation domain NDN18_04065 PF00550 Phosphopantetheine attachment site NDN18_04065 PF00975 Thioesterase domain NDN18_04075 PF09857 Putative toxin of bacterial toxin-antitoxin pair NDN18_04105 PF00881 Nitroreductase family NDN18_04120 PF02595 Glycerate kinase family NDN18_04125 PF00384 Molybdopterin oxidoreductase NDN18_04130 PF02634 FdhD/NarQ family NDN18_04135 PF06803 Protein of unknown function (DUF1232) NDN18_04140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN18_04140 PF11890 Domain of unknown function (DUF3410) NDN18_04140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN18_04145 PF00152 tRNA synthetases class II (D, K and N) NDN18_04155 PF18073 Rubredoxin metal binding domain NDN18_04160 PF00324 Amino acid permease NDN18_04170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDN18_04170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NDN18_04175 PF01678 Diaminopimelate epimerase NDN18_04180 PF01810 LysE type translocator NDN18_04185 PF02899 Phage integrase, N-terminal SAM-like domain NDN18_04185 PF00589 Phage integrase family NDN18_04190 PF01012 Electron transfer flavoprotein domain NDN18_04195 PF01012 Electron transfer flavoprotein domain NDN18_04195 PF00766 Electron transfer flavoprotein FAD-binding domain NDN18_04200 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN18_04200 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN18_04225 PF00535 Glycosyl transferase family 2 NDN18_04245 PF13533 Biotin-lipoyl like NDN18_04255 PF00266 Aminotransferase class-V NDN18_04270 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NDN18_04280 PF02687 FtsX-like permease family NDN18_04280 PF12704 MacB-like periplasmic core domain NDN18_04285 PF00005 ABC transporter NDN18_04290 PF03772 Competence protein NDN18_04290 PF13567 Domain of unknown function (DUF4131) NDN18_04290 PF00753 Metallo-beta-lactamase superfamily NDN18_04300 PF06965 Na+/H+ antiporter 1 NDN18_04300 PF01343 Peptidase family S49 NDN18_04305 PF12697 Alpha/beta hydrolase family NDN18_04310 PF00551 Formyl transferase NDN18_04315 PF00586 AIR synthase related protein, N-terminal domain NDN18_04315 PF02769 AIR synthase related protein, C-terminal domain NDN18_04320 PF01594 AI-2E family transporter NDN18_04325 PF00308 Bacterial dnaA protein NDN18_04325 PF08299 Bacterial dnaA protein helix-turn-helix NDN18_04325 PF11638 DnaA N-terminal domain NDN18_04355 PF00588 SpoU rRNA Methylase family NDN18_04355 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN18_04360 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NDN18_04370 PF00691 OmpA family NDN18_04375 PF04052 TolB amino-terminal domain NDN18_04375 PF07676 WD40-like Beta Propeller Repeat NDN18_04385 PF02472 Biopolymer transport protein ExbD/TolR NDN18_04390 PF01618 MotA/TolQ/ExbB proton channel family NDN18_04395 PF03061 Thioesterase superfamily NDN18_04400 PF07687 Peptidase dimerisation domain NDN18_04400 PF01546 Peptidase family M20/M25/M40 NDN18_04405 PF05496 Holliday junction DNA helicase RuvB P-loop domain NDN18_04405 PF17864 RuvB AAA lid domain NDN18_04405 PF05491 RuvB C-terminal winged helix domain NDN18_04410 PF07499 RuvA, C-terminal domain NDN18_04410 PF01330 RuvA N terminal domain NDN18_04415 PF01966 HD domain NDN18_04420 PF02769 AIR synthase related protein, C-terminal domain NDN18_04420 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NDN18_04420 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NDN18_04425 PF07690 Major Facilitator Superfamily NDN18_04430 PF01784 NIF3 (NGG1p interacting factor 3) NDN18_04435 PF00378 Enoyl-CoA hydratase/isomerase NDN18_04440 PF00293 NUDIX domain NDN18_04440 PF01467 Cytidylyltransferase-like NDN18_04450 PF00578 AhpC/TSA family NDN18_04465 PF06508 Queuosine biosynthesis protein QueC NDN18_04475 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_04475 PF14602 Hexapeptide repeat of succinyl-transferase NDN18_04475 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NDN18_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_04485 PF03466 LysR substrate binding domain NDN18_04490 PF00005 ABC transporter NDN18_04490 PF12857 TOBE-like domain NDN18_04495 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_04500 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_04515 PF01063 Amino-transferase class IV NDN18_04520 PF02618 YceG-like family NDN18_04525 PF02223 Thymidylate kinase NDN18_04535 PF02910 Fumarate reductase flavoprotein C-term NDN18_04535 PF00890 FAD binding domain NDN18_04540 PF13180 PDZ domain NDN18_04550 PF00679 Elongation factor G C-terminus NDN18_04550 PF03144 Elongation factor Tu domain 2 NDN18_04550 PF00009 Elongation factor Tu GTP binding domain NDN18_04550 PF06421 GTP-binding protein LepA C-terminus NDN18_04555 PF10502 Signal peptidase, peptidase S26 NDN18_04565 PF14622 Ribonuclease-III-like NDN18_04565 PF00035 Double-stranded RNA binding motif NDN18_04570 PF07650 KH domain NDN18_04570 PF01926 50S ribosome-binding GTPase NDN18_04580 PF02565 Recombination protein O C terminal NDN18_04580 PF11967 Recombination protein O N terminal NDN18_04585 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NDN18_04590 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NDN18_04595 PF00106 short chain dehydrogenase NDN18_04625 PF00155 Aminotransferase class I and II NDN18_04635 PF00990 Diguanylate cyclase, GGDEF domain NDN18_04635 PF17151 Periplasmic sensor domain NDN18_04645 PF17757 UvrB interaction domain NDN18_04645 PF12344 Ultra-violet resistance protein B NDN18_04645 PF02151 UvrB/uvrC motif NDN18_04645 PF00271 Helicase conserved C-terminal domain NDN18_04645 PF04851 Type III restriction enzyme, res subunit NDN18_04655 PF00892 EamA-like transporter family NDN18_04660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN18_04660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN18_04675 PF01018 GTP1/OBG NDN18_04675 PF01926 50S ribosome-binding GTPase NDN18_04680 PF00696 Amino acid kinase family NDN18_04680 PF01472 PUA domain NDN18_04690 PF07759 Protein of unknown function (DUF1615) NDN18_04695 PF01207 Dihydrouridine synthase (Dus) NDN18_04700 PF03060 Nitronate monooxygenase NDN18_04715 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN18_04745 PF00875 DNA photolyase NDN18_04745 PF03441 FAD binding domain of DNA photolyase NDN18_04750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN18_04755 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_04760 PF00768 D-alanyl-D-alanine carboxypeptidase NDN18_04760 PF07943 Penicillin-binding protein 5, C-terminal domain NDN18_04770 PF03971 Monomeric isocitrate dehydrogenase NDN18_04775 PF00849 RNA pseudouridylate synthase NDN18_04780 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN18_04800 PF06779 Uncharacterised MFS-type transporter YbfB NDN18_04805 PF03466 LysR substrate binding domain NDN18_04805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_04810 PF00375 Sodium:dicarboxylate symporter family NDN18_04815 PF02567 Phenazine biosynthesis-like protein NDN18_04820 PF05193 Peptidase M16 inactive domain NDN18_04820 PF00675 Insulinase (Peptidase family M16) NDN18_04845 PF01867 CRISPR associated protein Cas1 NDN18_04855 PF09611 CRISPR-associated protein (Cas_Csy1) NDN18_04860 PF09614 CRISPR-associated protein (Cas_Csy2) NDN18_04865 PF09615 CRISPR-associated protein (Cas_Csy3) NDN18_04875 PF02581 Thiamine monophosphate synthase NDN18_04880 PF00202 Aminotransferase class-III NDN18_04890 PF00849 RNA pseudouridylate synthase NDN18_04895 PF00176 SNF2 family N-terminal domain NDN18_04895 PF18339 RapA N-terminal Tudor like domain 1 NDN18_04895 PF12137 RNA polymerase recycling family C-terminal NDN18_04895 PF18337 RapA N-terminal Tudor like domain NDN18_04895 PF00271 Helicase conserved C-terminal domain NDN18_04905 PF00440 Bacterial regulatory proteins, tetR family NDN18_04910 PF00175 Oxidoreductase NAD-binding domain NDN18_04910 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_04910 PF00970 Oxidoreductase FAD-binding domain NDN18_04915 PF00487 Fatty acid desaturase NDN18_04925 PF17754 MftR C-terminal domain NDN18_04925 PF00440 Bacterial regulatory proteins, tetR family NDN18_04935 PF00202 Aminotransferase class-III NDN18_04940 PF00282 Pyridoxal-dependent decarboxylase conserved domain NDN18_04945 PF00171 Aldehyde dehydrogenase family NDN18_04950 PF01037 Lrp/AsnC ligand binding domain NDN18_04955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN18_04955 PF00205 Thiamine pyrophosphate enzyme, central domain NDN18_04955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN18_04960 PF00324 Amino acid permease NDN18_04965 PF12849 PBP superfamily domain NDN18_04970 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_04975 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_04980 PF00005 ABC transporter NDN18_04985 PF01343 Peptidase family S49 NDN18_04985 PF08496 Peptidase family S49 N-terminal NDN18_05000 PF08328 Adenylosuccinate lyase C-terminal NDN18_05000 PF00206 Lyase NDN18_05005 PF04356 Protein of unknown function (DUF489) NDN18_05015 PF13344 Haloacid dehalogenase-like hydrolase NDN18_05015 PF00293 NUDIX domain NDN18_05020 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_05025 PF07943 Penicillin-binding protein 5, C-terminal domain NDN18_05025 PF00768 D-alanyl-D-alanine carboxypeptidase NDN18_05040 PF01975 Survival protein SurE NDN18_05045 PF01476 LysM domain NDN18_05045 PF01551 Peptidase family M23 NDN18_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_05050 PF03466 LysR substrate binding domain NDN18_05055 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN18_05055 PF13654 AAA domain NDN18_05060 PF07690 Major Facilitator Superfamily NDN18_05065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN18_05070 PF13593 SBF-like CPA transporter family (DUF4137) NDN18_05075 PF01197 Ribosomal protein L31 NDN18_05080 PF12792 CSS motif domain associated with EAL NDN18_05080 PF00563 EAL domain NDN18_05090 PF04055 Radical SAM superfamily NDN18_05095 PF01132 Elongation factor P (EF-P) OB domain NDN18_05095 PF08207 Elongation factor P (EF-P) KOW-like domain NDN18_05095 PF09285 Elongation factor P, C-terminal NDN18_05100 PF02554 Carbon starvation protein CstA NDN18_05100 PF13722 5TM C-terminal transporter carbon starvation CstA NDN18_05105 PF04328 Selenoprotein, putative NDN18_05145 PF02678 Pirin NDN18_05145 PF17954 Quercetinase C-terminal cupin domain NDN18_05150 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_05155 PF08348 YheO-like PAS domain NDN18_05155 PF13309 HTH domain NDN18_05165 PF00550 Phosphopantetheine attachment site NDN18_05165 PF00668 Condensation domain NDN18_05165 PF13193 AMP-binding enzyme C-terminal domain NDN18_05165 PF00501 AMP-binding enzyme NDN18_05170 PF00501 AMP-binding enzyme NDN18_05170 PF00975 Thioesterase domain NDN18_05170 PF00550 Phosphopantetheine attachment site NDN18_05170 PF00668 Condensation domain NDN18_05170 PF13193 AMP-binding enzyme C-terminal domain NDN18_05175 PF01032 FecCD transport family NDN18_05180 PF01032 FecCD transport family NDN18_05185 PF00005 ABC transporter NDN18_05190 PF01497 Periplasmic binding protein NDN18_05195 PF00593 TonB dependent receptor NDN18_05195 PF07715 TonB-dependent Receptor Plug Domain NDN18_05200 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NDN18_05205 PF00550 Phosphopantetheine attachment site NDN18_05205 PF00501 AMP-binding enzyme NDN18_05205 PF00668 Condensation domain NDN18_05210 PF00501 AMP-binding enzyme NDN18_05210 PF13193 AMP-binding enzyme C-terminal domain NDN18_05215 PF00857 Isochorismatase family NDN18_05215 PF00550 Phosphopantetheine attachment site NDN18_05220 PF00282 Pyridoxal-dependent decarboxylase conserved domain NDN18_05225 PF00005 ABC transporter NDN18_05230 PF00005 ABC transporter NDN18_05235 PF00975 Thioesterase domain NDN18_05240 PF17837 4'-phosphopantetheinyl transferase N-terminal domain NDN18_05240 PF01648 4'-phosphopantetheinyl transferase superfamily NDN18_05245 PF00425 chorismate binding enzyme NDN18_05255 PF01208 Uroporphyrinogen decarboxylase (URO-D) NDN18_05260 PF05675 Protein of unknown function (DUF817) NDN18_05275 PF00144 Beta-lactamase NDN18_05280 PF01227 GTP cyclohydrolase I NDN18_05285 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_05285 PF01799 [2Fe-2S] binding domain NDN18_05290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase NDN18_05290 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain NDN18_05300 PF01713 Smr domain NDN18_05305 PF00218 Indole-3-glycerol phosphate synthase NDN18_05310 PF02885 Glycosyl transferase family, helical bundle domain NDN18_05310 PF00591 Glycosyl transferase family, a/b domain NDN18_05315 PF07715 TonB-dependent Receptor Plug Domain NDN18_05315 PF00593 TonB dependent receptor NDN18_05320 PF11838 ERAP1-like C-terminal domain NDN18_05320 PF01433 Peptidase family M1 domain NDN18_05325 PF00117 Glutamine amidotransferase class-I NDN18_05335 PF00854 POT family NDN18_05340 PF03951 Glutamine synthetase, beta-Grasp domain NDN18_05340 PF00120 Glutamine synthetase, catalytic domain NDN18_05345 PF04345 Chorismate lyase NDN18_05350 PF01040 UbiA prenyltransferase family NDN18_05385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN18_05385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN18_05390 PF01784 NIF3 (NGG1p interacting factor 3) NDN18_05395 PF13180 PDZ domain NDN18_05400 PF01743 Poly A polymerase head domain NDN18_05400 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN18_05405 PF03949 Malic enzyme, NAD binding domain NDN18_05405 PF01515 Phosphate acetyl/butaryl transferase NDN18_05405 PF00390 Malic enzyme, N-terminal domain NDN18_05410 PF00990 Diguanylate cyclase, GGDEF domain NDN18_05410 PF03707 Bacterial signalling protein N terminal repeat NDN18_05410 PF00563 EAL domain NDN18_05415 PF04452 RNA methyltransferase NDN18_05420 PF02219 Methylenetetrahydrofolate reductase NDN18_05425 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NDN18_05425 PF05221 S-adenosyl-L-homocysteine hydrolase NDN18_05440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_05440 PF09317 Domain of unknown function (DUF1974) NDN18_05440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_05445 PF04055 Radical SAM superfamily NDN18_05450 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_05450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN18_05460 PF07690 Major Facilitator Superfamily NDN18_05470 PF00557 Metallopeptidase family M24 NDN18_05475 PF00318 Ribosomal protein S2 NDN18_05480 PF00889 Elongation factor TS NDN18_05490 PF12833 Helix-turn-helix domain NDN18_05545 PF00216 Bacterial DNA-binding protein NDN18_05575 PF13401 AAA domain NDN18_05575 PF01471 Putative peptidoglycan binding domain NDN18_05605 PF10502 Signal peptidase, peptidase S26 NDN18_05640 PF03237 Terminase-like family NDN18_05655 PF06074 Protein of unknown function (DUF935) NDN18_05660 PF04233 Phage Mu protein F like protein NDN18_05680 PF10124 Mu-like prophage major head subunit gpT NDN18_05775 PF03330 Lytic transglycolase NDN18_05775 PF05036 Sporulation related domain NDN18_05780 PF13406 Transglycosylase SLT domain NDN18_05785 PF01098 Cell cycle protein NDN18_05795 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NDN18_05795 PF14489 QueF-like protein NDN18_05800 PF01061 ABC-2 type transporter NDN18_05805 PF00005 ABC transporter NDN18_05810 PF00589 Phage integrase family NDN18_05870 PF00717 Peptidase S24-like NDN18_05895 PF01695 IstB-like ATP binding protein NDN18_05990 PF00583 Acetyltransferase (GNAT) family NDN18_06090 PF00464 Serine hydroxymethyltransferase NDN18_06095 PF02321 Outer membrane efflux protein NDN18_06100 PF00873 AcrB/AcrD/AcrF family NDN18_06105 PF13533 Biotin-lipoyl like NDN18_06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_06110 PF03466 LysR substrate binding domain NDN18_06115 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN18_06120 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_06125 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_06130 PF00005 ABC transporter NDN18_06135 PF00893 Small Multidrug Resistance protein NDN18_06140 PF00037 4Fe-4S binding domain NDN18_06145 PF01136 Peptidase family U32 NDN18_06145 PF16325 Peptidase family U32 C-terminal domain NDN18_06150 PF00155 Aminotransferase class I and II NDN18_06150 PF00392 Bacterial regulatory proteins, gntR family NDN18_06155 PF02567 Phenazine biosynthesis-like protein NDN18_06160 PF00175 Oxidoreductase NAD-binding domain NDN18_06160 PF00970 Oxidoreductase FAD-binding domain NDN18_06165 PF01980 tRNA-methyltransferase O NDN18_06165 PF18389 TrmO C-terminal domain NDN18_06175 PF00437 Type II/IV secretion system protein NDN18_06175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN18_06185 PF00072 Response regulator receiver domain NDN18_06185 PF00486 Transcriptional regulatory protein, C terminal NDN18_06190 PF08521 Two-component sensor kinase N-terminal NDN18_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_06190 PF00512 His Kinase A (phospho-acceptor) domain NDN18_06200 PF00293 NUDIX domain NDN18_06210 PF00905 Penicillin binding protein transpeptidase domain NDN18_06210 PF14814 Bifunctional transglycosylase second domain NDN18_06210 PF00912 Transglycosylase NDN18_06215 PF01513 ATP-NAD kinase NDN18_06220 PF07023 Protein of unknown function (DUF1315) NDN18_06225 PF02885 Glycosyl transferase family, helical bundle domain NDN18_06225 PF00591 Glycosyl transferase family, a/b domain NDN18_06230 PF00375 Sodium:dicarboxylate symporter family NDN18_06235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_06235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_06235 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_06240 PF00756 Putative esterase NDN18_06245 PF01842 ACT domain NDN18_06245 PF01817 Chorismate mutase type II NDN18_06245 PF00800 Prephenate dehydratase NDN18_06250 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN18_06260 PF07687 Peptidase dimerisation domain NDN18_06260 PF01546 Peptidase family M20/M25/M40 NDN18_06265 PF01137 RNA 3'-terminal phosphate cyclase NDN18_06265 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NDN18_06280 PF01139 tRNA-splicing ligase RtcB NDN18_06285 PF00753 Metallo-beta-lactamase superfamily NDN18_06290 PF00158 Sigma-54 interaction domain NDN18_06290 PF06956 Regulator of RNA terminal phosphate cyclase NDN18_06300 PF03883 Peroxide stress protein YaaA NDN18_06310 PF05690 Thiazole biosynthesis protein ThiG NDN18_06320 PF04241 Protein of unknown function (DUF423) NDN18_06325 PF04545 Sigma-70, region 4 NDN18_06325 PF04542 Sigma-70 region 2 NDN18_06325 PF00140 Sigma-70 factor, region 1.2 NDN18_06340 PF00313 'Cold-shock' DNA-binding domain NDN18_06345 PF00270 DEAD/DEAH box helicase NDN18_06345 PF00271 Helicase conserved C-terminal domain NDN18_06355 PF00881 Nitroreductase family NDN18_06360 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN18_06360 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN18_06380 PF01180 Dihydroorotate dehydrogenase NDN18_06385 PF02674 Colicin V production protein NDN18_06390 PF00156 Phosphoribosyl transferase domain NDN18_06405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN18_06405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN18_06410 PF01435 Peptidase family M48 NDN18_06415 PF09424 Yqey-like protein NDN18_06420 PF01165 Ribosomal protein S21 NDN18_06425 PF00814 Glycoprotease family NDN18_06445 PF00069 Protein kinase domain NDN18_06445 PF03793 PASTA domain NDN18_06470 PF17287 POTRA domain NDN18_06470 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NDN18_06470 PF08479 POTRA domain, ShlB-type NDN18_06475 PF13332 Hemagglutinin repeat NDN18_06475 PF13018 Extended Signal Peptide of Type V secretion system NDN18_06475 PF13332 Hemagglutinin repeat NDN18_06475 PF05860 haemagglutination activity domain NDN18_06475 PF04829 Pre-toxin domain with VENN motif NDN18_06475 PF13018 Extended Signal Peptide of Type V secretion system NDN18_06475 PF05860 haemagglutination activity domain NDN18_06475 PF04829 Pre-toxin domain with VENN motif NDN18_06515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_06515 PF03466 LysR substrate binding domain NDN18_06520 PF00202 Aminotransferase class-III NDN18_06525 PF00171 Aldehyde dehydrogenase family NDN18_06530 PF00324 Amino acid permease NDN18_06550 PF13649 Methyltransferase domain NDN18_06560 PF04076 Bacterial OB fold (BOF) protein NDN18_06585 PF00561 alpha/beta hydrolase fold NDN18_06590 PF03616 Sodium/glutamate symporter NDN18_06600 PF07729 FCD domain NDN18_06600 PF00392 Bacterial regulatory proteins, gntR family NDN18_06650 PF00083 Sugar (and other) transporter NDN18_06650 PF08946 Osmosensory transporter coiled coil NDN18_06655 PF00293 NUDIX domain NDN18_06685 PF04403 Paraquat-inducible protein A NDN18_06690 PF02470 MlaD protein NDN18_06705 PF00085 Thioredoxin NDN18_06705 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_06710 PF01177 Asp/Glu/Hydantoin racemase NDN18_06715 PF00892 EamA-like transporter family NDN18_06720 PF07995 Glucose / Sorbosone dehydrogenase NDN18_06730 PF00440 Bacterial regulatory proteins, tetR family NDN18_06730 PF17932 Tetracyclin repressor-like, C-terminal domain NDN18_06740 PF01494 FAD binding domain NDN18_06745 PF07690 Major Facilitator Superfamily NDN18_06750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_06750 PF03466 LysR substrate binding domain NDN18_06770 PF00375 Sodium:dicarboxylate symporter family NDN18_06780 PF00753 Metallo-beta-lactamase superfamily NDN18_06780 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN18_06785 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_06790 PF00005 ABC transporter NDN18_06790 PF09383 NIL domain NDN18_06795 PF03180 NLPA lipoprotein NDN18_06800 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NDN18_06800 PF02844 Phosphoribosylglycinamide synthetase, N domain NDN18_06800 PF02843 Phosphoribosylglycinamide synthetase, C domain NDN18_06805 PF02142 MGS-like domain NDN18_06805 PF01808 AICARFT/IMPCHase bienzyme NDN18_06810 PF02954 Bacterial regulatory protein, Fis family NDN18_06830 PF13932 GidA associated domain NDN18_06830 PF01134 Glucose inhibited division protein A NDN18_06840 PF14403 Circularly permuted ATP-grasp type 2 NDN18_06850 PF01841 Transglutaminase-like superfamily NDN18_06850 PF08379 Bacterial transglutaminase-like N-terminal region NDN18_06860 PF00842 Alanine racemase, C-terminal domain NDN18_06860 PF01168 Alanine racemase, N-terminal domain NDN18_06865 PF00772 DnaB-like helicase N terminal domain NDN18_06865 PF03796 DnaB-like helicase C terminal domain NDN18_06870 PF03948 Ribosomal protein L9, C-terminal domain NDN18_06870 PF01281 Ribosomal protein L9, N-terminal domain NDN18_06875 PF01084 Ribosomal protein S18 NDN18_06880 PF01250 Ribosomal protein S6 NDN18_06885 PF01040 UbiA prenyltransferase family NDN18_06890 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NDN18_06895 PF00510 Cytochrome c oxidase subunit III NDN18_06900 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDN18_06905 PF06481 COX Aromatic Rich Motif NDN18_06905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDN18_06915 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NDN18_06915 PF02896 PEP-utilising enzyme, TIM barrel domain NDN18_06915 PF00391 PEP-utilising enzyme, mobile domain NDN18_06920 PF03618 Kinase/pyrophosphorylase NDN18_06930 PF01522 Polysaccharide deacetylase NDN18_06930 PF14883 Hypothetical glycosyl hydrolase family 13 NDN18_06935 PF00535 Glycosyl transferase family 2 NDN18_06940 PF13994 PgaD-like protein NDN18_06950 PF00296 Luciferase-like monooxygenase NDN18_06965 PF03466 LysR substrate binding domain NDN18_06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_06975 PF00472 RF-1 domain NDN18_06975 PF03462 PCRF domain NDN18_06980 PF17827 PrmC N-terminal domain NDN18_06980 PF13847 Methyltransferase domain NDN18_06985 PF12833 Helix-turn-helix domain NDN18_06990 PF00106 short chain dehydrogenase NDN18_06995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_06995 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_06995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_07000 PF13193 AMP-binding enzyme C-terminal domain NDN18_07000 PF00501 AMP-binding enzyme NDN18_07005 PF01613 Flavin reductase like domain NDN18_07010 PF00899 ThiF family NDN18_07015 PF03109 ABC1 family NDN18_07030 PF03814 Potassium-transporting ATPase A subunit NDN18_07040 PF02669 K+-transporting ATPase, c chain NDN18_07045 PF13493 Domain of unknown function (DUF4118) NDN18_07045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_07045 PF00512 His Kinase A (phospho-acceptor) domain NDN18_07045 PF02702 Osmosensitive K+ channel His kinase sensor domain NDN18_07050 PF00072 Response regulator receiver domain NDN18_07050 PF00486 Transcriptional regulatory protein, C terminal NDN18_07055 PF00120 Glutamine synthetase, catalytic domain NDN18_07065 PF03232 Ubiquinone biosynthesis protein COQ7 NDN18_07070 PF07690 Major Facilitator Superfamily NDN18_07075 PF01103 Surface antigen NDN18_07075 PF07244 Surface antigen variable number repeat NDN18_07075 PF17243 POTRA domain TamA domain 1 NDN18_07090 PF06434 Aconitate hydratase 2 N-terminus NDN18_07090 PF11791 Aconitate B N-terminal domain NDN18_07090 PF00330 Aconitase family (aconitate hydratase) NDN18_07100 PF00027 Cyclic nucleotide-binding domain NDN18_07100 PF00520 Ion transport protein NDN18_07105 PF07690 Major Facilitator Superfamily NDN18_07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_07120 PF03466 LysR substrate binding domain NDN18_07125 PF04284 Protein of unknown function (DUF441) NDN18_07135 PF00849 RNA pseudouridylate synthase NDN18_07135 PF01479 S4 domain NDN18_07150 PF00849 RNA pseudouridylate synthase NDN18_07150 PF01479 S4 domain NDN18_07155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NDN18_07160 PF08676 MutL C terminal dimerisation domain NDN18_07160 PF01119 DNA mismatch repair protein, C-terminal domain NDN18_07170 PF17209 Hfq protein NDN18_07180 PF00881 Nitroreductase family NDN18_07190 PF00149 Calcineurin-like phosphoesterase NDN18_07195 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN18_07200 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN18_07200 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NDN18_07205 PF02540 NAD synthase NDN18_07205 PF00117 Glutamine amidotransferase class-I NDN18_07205 PF00958 GMP synthase C terminal domain NDN18_07210 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NDN18_07215 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NDN18_07220 PF13520 Amino acid permease NDN18_07225 PF00171 Aldehyde dehydrogenase family NDN18_07240 PF00465 Iron-containing alcohol dehydrogenase NDN18_07245 PF05970 PIF1-like helicase NDN18_07245 PF14493 Helix-turn-helix domain NDN18_07255 PF06445 GyrI-like small molecule binding domain NDN18_07260 PF02110 Hydroxyethylthiazole kinase family NDN18_07275 PF11940 Domain of unknown function (DUF3458) Ig-like fold NDN18_07275 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NDN18_07275 PF01433 Peptidase family M1 domain NDN18_07295 PF01817 Chorismate mutase type II NDN18_07300 PF01037 Lrp/AsnC ligand binding domain NDN18_07315 PF03895 YadA-like membrane anchor domain NDN18_07315 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN18_07315 PF13018 Extended Signal Peptide of Type V secretion system NDN18_07315 PF05658 Head domain of trimeric autotransporter adhesin NDN18_07320 PF00691 OmpA family NDN18_07320 PF01389 OmpA-like transmembrane domain NDN18_07340 PF00691 OmpA family NDN18_07340 PF01389 OmpA-like transmembrane domain NDN18_07350 PF02321 Outer membrane efflux protein NDN18_07355 PF03412 Peptidase C39 family NDN18_07355 PF00664 ABC transporter transmembrane region NDN18_07355 PF00005 ABC transporter NDN18_07370 PF02656 Domain of unknown function (DUF202) NDN18_07380 PF12706 Beta-lactamase superfamily domain NDN18_07385 PF07690 Major Facilitator Superfamily NDN18_07395 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN18_07400 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN18_07400 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation NDN18_07405 PF00682 HMGL-like NDN18_07405 PF07836 DmpG-like communication domain NDN18_07410 PF03573 outer membrane porin, OprD family NDN18_07415 PF00561 alpha/beta hydrolase fold NDN18_07420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_07420 PF03466 LysR substrate binding domain NDN18_07425 PF00355 Rieske [2Fe-2S] domain NDN18_07425 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN18_07430 PF00866 Ring hydroxylating beta subunit NDN18_07435 PF00355 Rieske [2Fe-2S] domain NDN18_07440 PF00106 short chain dehydrogenase NDN18_07445 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDN18_07450 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_07450 PF14759 Reductase C-terminal NDN18_07455 PF07690 Major Facilitator Superfamily NDN18_07460 PF07690 Major Facilitator Superfamily NDN18_07465 PF03466 LysR substrate binding domain NDN18_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_07470 PF01494 FAD binding domain NDN18_07500 PF07715 TonB-dependent Receptor Plug Domain NDN18_07500 PF00593 TonB dependent receptor NDN18_07505 PF00924 Mechanosensitive ion channel NDN18_07535 PF07715 TonB-dependent Receptor Plug Domain NDN18_07535 PF00593 TonB dependent receptor NDN18_07555 PF12848 ABC transporter NDN18_07555 PF00005 ABC transporter NDN18_07560 PF00582 Universal stress protein family NDN18_07585 PF00689 Cation transporting ATPase, C-terminus NDN18_07585 PF00690 Cation transporter/ATPase, N-terminus NDN18_07590 PF02308 MgtC family NDN18_07595 PF03594 Benzoate membrane transport protein NDN18_07600 PF01037 Lrp/AsnC ligand binding domain NDN18_07605 PF01810 LysE type translocator NDN18_07610 PF00923 Transaldolase/Fructose-6-phosphate aldolase NDN18_07615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_07615 PF03466 LysR substrate binding domain NDN18_07625 PF02803 Thiolase, C-terminal domain NDN18_07625 PF00108 Thiolase, N-terminal domain NDN18_07635 PF01575 MaoC like domain NDN18_07640 PF00144 Beta-lactamase NDN18_07650 PF07690 Major Facilitator Superfamily NDN18_07665 PF12169 DNA polymerase III subunits gamma and tau domain III NDN18_07665 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NDN18_07665 PF12170 DNA polymerase III tau subunit V interacting with alpha NDN18_07670 PF05506 Domain of unknown function (DUF756) NDN18_07670 PF04185 Phosphoesterase family NDN18_07675 PF03061 Thioesterase superfamily NDN18_07680 PF00465 Iron-containing alcohol dehydrogenase NDN18_07690 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN18_07695 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NDN18_07695 PF01565 FAD binding domain NDN18_07710 PF01645 Conserved region in glutamate synthase NDN18_08010 PF07484 Phage Tail Collar Domain NDN18_08010 PF08400 Prophage tail fibre N-terminal NDN18_08010 PF03335 Phage tail fibre repeat NDN18_08050 PF12832 MFS_1 like family NDN18_08060 PF02785 Biotin carboxylase C-terminal domain NDN18_08060 PF00289 Biotin carboxylase, N-terminal domain NDN18_08060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN18_08065 PF00364 Biotin-requiring enzyme NDN18_08070 PF01220 Dehydroquinase class II NDN18_08075 PF13438 Domain of unknown function (DUF4113) NDN18_08075 PF00817 impB/mucB/samB family NDN18_08075 PF11799 impB/mucB/samB family C-terminal domain NDN18_08085 PF00005 ABC transporter NDN18_08090 PF00072 Response regulator receiver domain NDN18_08090 PF00486 Transcriptional regulatory protein, C terminal NDN18_08100 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_08100 PF04324 BFD-like [2Fe-2S] binding domain NDN18_08100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN18_08100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN18_08100 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN18_08100 PF13806 Rieske-like [2Fe-2S] domain NDN18_08105 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_08105 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN18_08105 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN18_08105 PF04324 BFD-like [2Fe-2S] binding domain NDN18_08105 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN18_08110 PF04324 BFD-like [2Fe-2S] binding domain NDN18_08110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN18_08110 PF01568 Molydopterin dinucleotide binding domain NDN18_08110 PF00384 Molybdopterin oxidoreductase NDN18_08115 PF12804 MobA-like NTP transferase domain NDN18_08120 PF01568 Molydopterin dinucleotide binding domain NDN18_08120 PF00384 Molybdopterin oxidoreductase NDN18_08120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN18_08125 PF04055 Radical SAM superfamily NDN18_08125 PF06463 Molybdenum Cofactor Synthesis C NDN18_08135 PF02391 MoaE protein NDN18_08140 PF00994 Probable molybdopterin binding domain NDN18_08140 PF01967 MoaC family NDN18_08145 PF03454 MoeA C-terminal region (domain IV) NDN18_08145 PF03453 MoeA N-terminal region (domain I and II) NDN18_08145 PF00994 Probable molybdopterin binding domain NDN18_08150 PF01638 HxlR-like helix-turn-helix NDN18_08155 PF00155 Aminotransferase class I and II NDN18_08155 PF00392 Bacterial regulatory proteins, gntR family NDN18_08160 PF00892 EamA-like transporter family NDN18_08180 PF02635 DsrE/DsrF-like family NDN18_08185 PF16363 GDP-mannose 4,6 dehydratase NDN18_08190 PF10415 Fumarase C C-terminus NDN18_08190 PF00206 Lyase NDN18_08210 PF01266 FAD dependent oxidoreductase NDN18_08220 PF02542 YgbB family NDN18_08230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN18_08230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN18_08235 PF00440 Bacterial regulatory proteins, tetR family NDN18_08240 PF00072 Response regulator receiver domain NDN18_08240 PF02954 Bacterial regulatory protein, Fis family NDN18_08240 PF00158 Sigma-54 interaction domain NDN18_08245 PF00989 PAS fold NDN18_08245 PF00512 His Kinase A (phospho-acceptor) domain NDN18_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_08255 PF18693 TRAM domain NDN18_08255 PF00919 Uncharacterized protein family UPF0004 NDN18_08255 PF04055 Radical SAM superfamily NDN18_08260 PF00696 Amino acid kinase family NDN18_08265 PF01765 Ribosome recycling factor NDN18_08270 PF01255 Putative undecaprenyl diphosphate synthase NDN18_08280 PF13288 DXP reductoisomerase C-terminal domain NDN18_08280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NDN18_08280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NDN18_08285 PF17820 PDZ domain NDN18_08285 PF13180 PDZ domain NDN18_08285 PF02163 Peptidase family M50 NDN18_08290 PF07244 Surface antigen variable number repeat NDN18_08290 PF01103 Surface antigen NDN18_08300 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_08300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NDN18_08305 PF07977 FabA-like domain NDN18_08310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NDN18_08310 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_08325 PF02631 RecX family NDN18_08330 PF00154 recA bacterial DNA recombination protein NDN18_08335 PF01479 S4 domain NDN18_08340 PF13419 Haloacid dehalogenase-like hydrolase NDN18_08365 PF01037 Lrp/AsnC ligand binding domain NDN18_08370 PF00266 Aminotransferase class-V NDN18_08375 PF00324 Amino acid permease NDN18_08390 PF00082 Subtilase family NDN18_08390 PF05922 Peptidase inhibitor I9 NDN18_08395 PF00916 Sulfate permease family NDN18_08395 PF01740 STAS domain NDN18_08410 PF07995 Glucose / Sorbosone dehydrogenase NDN18_08420 PF00563 EAL domain NDN18_08420 PF03707 Bacterial signalling protein N terminal repeat NDN18_08420 PF00990 Diguanylate cyclase, GGDEF domain NDN18_08435 PF02378 Phosphotransferase system, EIIC NDN18_08435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NDN18_08440 PF00294 pfkB family carbohydrate kinase NDN18_08445 PF00391 PEP-utilising enzyme, mobile domain NDN18_08445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NDN18_08445 PF02896 PEP-utilising enzyme, TIM barrel domain NDN18_08445 PF00381 PTS HPr component phosphorylation site NDN18_08445 PF05524 PEP-utilising enzyme, N-terminal NDN18_08470 PF05525 Branched-chain amino acid transport protein NDN18_08475 PF00557 Metallopeptidase family M24 NDN18_08480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_08480 PF03466 LysR substrate binding domain NDN18_08490 PF00462 Glutaredoxin NDN18_08495 PF00202 Aminotransferase class-III NDN18_08500 PF00571 CBS domain NDN18_08500 PF00478 IMP dehydrogenase / GMP reductase domain NDN18_08525 PF00448 SRP54-type protein, GTPase domain NDN18_08525 PF02881 SRP54-type protein, helical bundle domain NDN18_08535 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NDN18_08545 PF08173 Membrane bound YbgT-like protein NDN18_08550 PF02322 Cytochrome bd terminal oxidase subunit II NDN18_08555 PF01654 Cytochrome bd terminal oxidase subunit I NDN18_08565 PF07290 Protein of unknown function (DUF1449) NDN18_08575 PF00294 pfkB family carbohydrate kinase NDN18_08580 PF07715 TonB-dependent Receptor Plug Domain NDN18_08580 PF00593 TonB dependent receptor NDN18_08585 PF05193 Peptidase M16 inactive domain NDN18_08585 PF00675 Insulinase (Peptidase family M16) NDN18_08585 PF08367 Peptidase M16C associated NDN18_08590 PF02253 Phospholipase A1 NDN18_08595 PF02386 Cation transport protein NDN18_08600 PF02254 TrkA-N domain NDN18_08600 PF02080 TrkA-C domain NDN18_08605 PF00585 C-terminal regulatory domain of Threonine dehydratase NDN18_08605 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_08610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDN18_08625 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN18_08625 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN18_08635 PF02617 ATP-dependent Clp protease adaptor protein ClpS NDN18_08640 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_08640 PF07724 AAA domain (Cdc48 subfamily) NDN18_08640 PF17871 AAA lid domain NDN18_08640 PF02861 Clp amino terminal domain, pathogenicity island component NDN18_08640 PF10431 C-terminal, D2-small domain, of ClpB protein NDN18_08645 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NDN18_08650 PF00793 DAHP synthetase I family NDN18_08665 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_08665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN18_08695 PF00117 Glutamine amidotransferase class-I NDN18_08695 PF06418 CTP synthase N-terminus NDN18_08700 PF00793 DAHP synthetase I family NDN18_08705 PF00113 Enolase, C-terminal TIM barrel domain NDN18_08705 PF03952 Enolase, N-terminal domain NDN18_08715 PF04977 Septum formation initiator NDN18_08720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NDN18_08725 PF01144 Coenzyme A transferase NDN18_08730 PF01144 Coenzyme A transferase NDN18_08735 PF00108 Thiolase, N-terminal domain NDN18_08735 PF02803 Thiolase, C-terminal domain NDN18_08740 PF00206 Lyase NDN18_08740 PF10397 Adenylosuccinate lyase C-terminus NDN18_08745 PF00561 alpha/beta hydrolase fold NDN18_08750 PF07690 Major Facilitator Superfamily NDN18_08755 PF02627 Carboxymuconolactone decarboxylase family NDN18_08760 PF00775 Dioxygenase NDN18_08760 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NDN18_08765 PF00775 Dioxygenase NDN18_08770 PF01487 Type I 3-dehydroquinase NDN18_08775 PF05048 Periplasmic copper-binding protein (NosD) NDN18_08780 PF04966 Carbohydrate-selective porin, OprB family NDN18_08785 PF13360 PQQ-like domain NDN18_08785 PF01011 PQQ enzyme repeat NDN18_08795 PF04143 Sulphur transport NDN18_08805 PF00753 Metallo-beta-lactamase superfamily NDN18_08810 PF09339 IclR helix-turn-helix domain NDN18_08810 PF01614 Bacterial transcriptional regulator NDN18_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_08815 PF03466 LysR substrate binding domain NDN18_08820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_08820 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_08820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_08835 PF00106 short chain dehydrogenase NDN18_08845 PF07690 Major Facilitator Superfamily NDN18_08855 PF01425 Amidase NDN18_08860 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN18_08875 PF00355 Rieske [2Fe-2S] domain NDN18_08875 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN18_08890 PF00175 Oxidoreductase NAD-binding domain NDN18_08890 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_08895 PF01613 Flavin reductase like domain NDN18_08900 PF02311 AraC-like ligand binding domain NDN18_08900 PF12833 Helix-turn-helix domain NDN18_08905 PF01179 Copper amine oxidase, enzyme domain NDN18_08905 PF07833 Copper amine oxidase N-terminal domain NDN18_08905 PF02727 Copper amine oxidase, N2 domain NDN18_08905 PF02728 Copper amine oxidase, N3 domain NDN18_08915 PF00171 Aldehyde dehydrogenase family NDN18_08920 PF12146 Serine aminopeptidase, S33 NDN18_08925 PF02803 Thiolase, C-terminal domain NDN18_08925 PF00108 Thiolase, N-terminal domain NDN18_08930 PF01144 Coenzyme A transferase NDN18_08935 PF01144 Coenzyme A transferase NDN18_08940 PF04444 Catechol dioxygenase N terminus NDN18_08940 PF00775 Dioxygenase NDN18_08945 PF02426 Muconolactone delta-isomerase NDN18_08950 PF13378 Enolase C-terminal domain-like NDN18_08950 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDN18_08955 PF03466 LysR substrate binding domain NDN18_08955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_08965 PF00392 Bacterial regulatory proteins, gntR family NDN18_08965 PF07729 FCD domain NDN18_08970 PF00920 Dehydratase family NDN18_08975 PF07690 Major Facilitator Superfamily NDN18_08985 PF00171 Aldehyde dehydrogenase family NDN18_08990 PF01636 Phosphotransferase enzyme family NDN18_09005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_09005 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_09005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_09015 PF00158 Sigma-54 interaction domain NDN18_09015 PF02954 Bacterial regulatory protein, Fis family NDN18_09015 PF06506 Propionate catabolism activator NDN18_09020 PF13193 AMP-binding enzyme C-terminal domain NDN18_09020 PF00501 AMP-binding enzyme NDN18_09025 PF04341 Protein of unknown function, DUF485 NDN18_09030 PF00474 Sodium:solute symporter family NDN18_09035 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_09035 PF00107 Zinc-binding dehydrogenase NDN18_09040 PF00171 Aldehyde dehydrogenase family NDN18_09050 PF00561 alpha/beta hydrolase fold NDN18_09055 PF00199 Catalase NDN18_09055 PF06628 Catalase-related immune-responsive NDN18_09070 PF07859 alpha/beta hydrolase fold NDN18_09075 PF01047 MarR family NDN18_09080 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_09080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN18_09085 PF00106 short chain dehydrogenase NDN18_09090 PF01872 RibD C-terminal domain NDN18_09095 PF00376 MerR family regulatory protein NDN18_09095 PF09278 MerR, DNA binding NDN18_09105 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_09115 PF12706 Beta-lactamase superfamily domain NDN18_09120 PF08359 YsiA-like protein, C-terminal region NDN18_09120 PF00440 Bacterial regulatory proteins, tetR family NDN18_09145 PF07690 Major Facilitator Superfamily NDN18_09160 PF03466 LysR substrate binding domain NDN18_09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09165 PF02525 Flavodoxin-like fold NDN18_09170 PF07681 DoxX NDN18_09175 PF00043 Glutathione S-transferase, C-terminal domain NDN18_09175 PF02798 Glutathione S-transferase, N-terminal domain NDN18_09180 PF00107 Zinc-binding dehydrogenase NDN18_09180 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_09190 PF01638 HxlR-like helix-turn-helix NDN18_09195 PF13360 PQQ-like domain NDN18_09220 PF07690 Major Facilitator Superfamily NDN18_09225 PF04909 Amidohydrolase NDN18_09235 PF00392 Bacterial regulatory proteins, gntR family NDN18_09235 PF07702 UTRA domain NDN18_09240 PF08450 SMP-30/Gluconolactonase/LRE-like region NDN18_09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09250 PF03466 LysR substrate binding domain NDN18_09265 PF03466 LysR substrate binding domain NDN18_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09270 PF07883 Cupin domain NDN18_09275 PF01494 FAD binding domain NDN18_09280 PF13417 Glutathione S-transferase, N-terminal domain NDN18_09285 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN18_09290 PF07690 Major Facilitator Superfamily NDN18_09300 PF00529 HlyD membrane-fusion protein of T1SS NDN18_09300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_09315 PF00171 Aldehyde dehydrogenase family NDN18_09320 PF00920 Dehydratase family NDN18_09330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09330 PF03466 LysR substrate binding domain NDN18_09335 PF01370 NAD dependent epimerase/dehydratase family NDN18_09340 PF07690 Major Facilitator Superfamily NDN18_09345 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN18_09345 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN18_09350 PF12833 Helix-turn-helix domain NDN18_09350 PF06719 AraC-type transcriptional regulator N-terminus NDN18_09365 PF00107 Zinc-binding dehydrogenase NDN18_09365 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_09375 PF01032 FecCD transport family NDN18_09380 PF00005 ABC transporter NDN18_09400 PF14572 Phosphoribosyl synthetase-associated domain NDN18_09400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN18_09405 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN18_09420 PF13533 Biotin-lipoyl like NDN18_09425 PF07690 Major Facilitator Superfamily NDN18_09450 PF01975 Survival protein SurE NDN18_09460 PF13291 ACT domain NDN18_09460 PF04607 Region found in RelA / SpoT proteins NDN18_09460 PF02824 TGS domain NDN18_09495 PF12146 Serine aminopeptidase, S33 NDN18_09500 PF12833 Helix-turn-helix domain NDN18_09500 PF02311 AraC-like ligand binding domain NDN18_09510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_09510 PF00512 His Kinase A (phospho-acceptor) domain NDN18_09510 PF00672 HAMP domain NDN18_09510 PF16527 Two-component sensor protein CpxA, periplasmic domain NDN18_09515 PF00072 Response regulator receiver domain NDN18_09515 PF00486 Transcriptional regulatory protein, C terminal NDN18_09520 PF00529 HlyD membrane-fusion protein of T1SS NDN18_09520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_09525 PF00873 AcrB/AcrD/AcrF family NDN18_09530 PF17760 UvrA interaction domain NDN18_09530 PF00005 ABC transporter NDN18_09530 PF17755 UvrA DNA-binding domain NDN18_09535 PF00296 Luciferase-like monooxygenase NDN18_09540 PF07715 TonB-dependent Receptor Plug Domain NDN18_09540 PF00593 TonB dependent receptor NDN18_09550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN18_09555 PF02472 Biopolymer transport protein ExbD/TolR NDN18_09560 PF01618 MotA/TolQ/ExbB proton channel family NDN18_09565 PF03544 Gram-negative bacterial TonB protein C-terminal NDN18_09570 PF00296 Luciferase-like monooxygenase NDN18_09575 PF09084 NMT1/THI5 like NDN18_09580 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_09585 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_09590 PF00005 ABC transporter NDN18_09595 PF02416 mttA/Hcf106 family NDN18_09600 PF02416 mttA/Hcf106 family NDN18_09605 PF00902 Sec-independent protein translocase protein (TatC) NDN18_09610 PF00158 Sigma-54 interaction domain NDN18_09615 PF00296 Luciferase-like monooxygenase NDN18_09625 PF07715 TonB-dependent Receptor Plug Domain NDN18_09625 PF00593 TonB dependent receptor NDN18_09635 PF00664 ABC transporter transmembrane region NDN18_09635 PF00005 ABC transporter NDN18_09640 PF00664 ABC transporter transmembrane region NDN18_09640 PF00005 ABC transporter NDN18_09650 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN18_09650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_09650 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_09655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN18_09655 PF00005 ABC transporter NDN18_09660 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_09660 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN18_09665 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_09670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN18_09675 PF00296 Luciferase-like monooxygenase NDN18_09695 PF16970 Type-1 fimbrial protein, A NDN18_09700 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN18_09700 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN18_09705 PF13953 PapC C-terminal domain NDN18_09705 PF00577 Outer membrane usher protein NDN18_09705 PF13954 PapC N-terminal domain NDN18_09710 PF00419 Fimbrial protein NDN18_09725 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_09725 PF00107 Zinc-binding dehydrogenase NDN18_09740 PF00199 Catalase NDN18_09755 PF13091 PLD-like domain NDN18_09770 PF01244 Membrane dipeptidase (Peptidase family M19) NDN18_09775 PF04055 Radical SAM superfamily NDN18_09775 PF13186 Iron-sulfur cluster-binding domain NDN18_09780 PF05402 Coenzyme PQQ synthesis protein D (PqqD) NDN18_09785 PF03070 TENA/THI-4/PQQC family NDN18_09790 PF12706 Beta-lactamase superfamily domain NDN18_09795 PF08042 PqqA family NDN18_09800 PF17941 Polyphosphate kinase C-terminal domain 1 NDN18_09800 PF13090 Polyphosphate kinase C-terminal domain 2 NDN18_09800 PF13089 Polyphosphate kinase N-terminal domain NDN18_09800 PF02503 Polyphosphate kinase middle domain NDN18_09805 PF00149 Calcineurin-like phosphoesterase NDN18_09815 PF00857 Isochorismatase family NDN18_09815 PF00550 Phosphopantetheine attachment site NDN18_09820 PF00106 short chain dehydrogenase NDN18_09825 PF03459 TOBE domain NDN18_09825 PF00005 ABC transporter NDN18_09830 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_09840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09840 PF03459 TOBE domain NDN18_09845 PF00355 Rieske [2Fe-2S] domain NDN18_09845 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN18_09850 PF00866 Ring hydroxylating beta subunit NDN18_09855 PF00175 Oxidoreductase NAD-binding domain NDN18_09855 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_09855 PF00970 Oxidoreductase FAD-binding domain NDN18_09870 PF01613 Flavin reductase like domain NDN18_09885 PF01738 Dienelactone hydrolase family NDN18_09890 PF07690 Major Facilitator Superfamily NDN18_09895 PF12833 Helix-turn-helix domain NDN18_09895 PF06719 AraC-type transcriptional regulator N-terminus NDN18_09920 PF00440 Bacterial regulatory proteins, tetR family NDN18_09940 PF03466 LysR substrate binding domain NDN18_09940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09945 PF01144 Coenzyme A transferase NDN18_09950 PF01144 Coenzyme A transferase NDN18_09955 PF02667 Short chain fatty acid transporter NDN18_09960 PF00108 Thiolase, N-terminal domain NDN18_09960 PF02803 Thiolase, C-terminal domain NDN18_09965 PF03466 LysR substrate binding domain NDN18_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09970 PF03466 LysR substrate binding domain NDN18_09970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_09985 PF10415 Fumarase C C-terminus NDN18_09985 PF00206 Lyase NDN18_09990 PF00593 TonB dependent receptor NDN18_09990 PF07715 TonB-dependent Receptor Plug Domain NDN18_09995 PF00083 Sugar (and other) transporter NDN18_10010 PF00005 ABC transporter NDN18_10015 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_10035 PF07702 UTRA domain NDN18_10035 PF00392 Bacterial regulatory proteins, gntR family NDN18_10045 PF02525 Flavodoxin-like fold NDN18_10050 PF01638 HxlR-like helix-turn-helix NDN18_10055 PF12833 Helix-turn-helix domain NDN18_10055 PF06445 GyrI-like small molecule binding domain NDN18_10070 PF01925 Sulfite exporter TauE/SafE NDN18_10085 PF04273 Putative phosphatase (DUF442) NDN18_10085 PF00753 Metallo-beta-lactamase superfamily NDN18_10090 PF00158 Sigma-54 interaction domain NDN18_10090 PF00072 Response regulator receiver domain NDN18_10090 PF02954 Bacterial regulatory protein, Fis family NDN18_10095 PF01062 Bestrophin, RFP-TM, chloride channel NDN18_10100 PF00107 Zinc-binding dehydrogenase NDN18_10100 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_10105 PF00106 short chain dehydrogenase NDN18_10110 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_10110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN18_10115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN18_10115 PF00364 Biotin-requiring enzyme NDN18_10115 PF02817 e3 binding domain NDN18_10120 PF02780 Transketolase, C-terminal domain NDN18_10120 PF02779 Transketolase, pyrimidine binding domain NDN18_10125 PF00676 Dehydrogenase E1 component NDN18_10130 PF04055 Radical SAM superfamily NDN18_10145 PF00990 Diguanylate cyclase, GGDEF domain NDN18_10145 PF08448 PAS fold NDN18_10150 PF01264 Chorismate synthase NDN18_10155 PF05175 Methyltransferase small domain NDN18_10160 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_10170 PF17862 AAA+ lid domain NDN18_10170 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_10170 PF01434 Peptidase family M41 NDN18_10180 PF05166 YcgL domain NDN18_10200 PF01612 3'-5' exonuclease NDN18_10200 PF00570 HRDC domain NDN18_10205 PF02132 RecR protein NDN18_10205 PF13662 Toprim domain NDN18_10210 PF02575 YbaB/EbfC DNA-binding family NDN18_10220 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN18_10225 PF00561 alpha/beta hydrolase fold NDN18_10230 PF08241 Methyltransferase domain NDN18_10260 PF01230 HIT domain NDN18_10295 PF00005 ABC transporter NDN18_10300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_10310 PF02684 Lipid-A-disaccharide synthetase NDN18_10315 PF07715 TonB-dependent Receptor Plug Domain NDN18_10315 PF00593 TonB dependent receptor NDN18_10335 PF01925 Sulfite exporter TauE/SafE NDN18_10340 PF00793 DAHP synthetase I family NDN18_10345 PF02654 Cobalamin-5-phosphate synthase NDN18_10355 PF00300 Histidine phosphatase superfamily (branch 1) NDN18_10360 PF02277 Phosphoribosyltransferase NDN18_10365 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NDN18_10375 PF13419 Haloacid dehalogenase-like hydrolase NDN18_10400 PF00593 TonB dependent receptor NDN18_10400 PF07715 TonB-dependent Receptor Plug Domain NDN18_10405 PF03737 Aldolase/RraA NDN18_10415 PF06276 Ferric iron reductase FhuF-like transporter NDN18_10415 PF04183 IucA / IucC family NDN18_10420 PF06276 Ferric iron reductase FhuF-like transporter NDN18_10420 PF04183 IucA / IucC family NDN18_10425 PF07690 Major Facilitator Superfamily NDN18_10430 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NDN18_10435 PF06276 Ferric iron reductase FhuF-like transporter NDN18_10435 PF04183 IucA / IucC family NDN18_10440 PF04073 Aminoacyl-tRNA editing domain NDN18_10450 PF03109 ABC1 family NDN18_10455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_10455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_10455 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_10460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_10460 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_10460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_10465 PF00487 Fatty acid desaturase NDN18_10470 PF12852 Cupin NDN18_10470 PF12833 Helix-turn-helix domain NDN18_10475 PF00639 PPIC-type PPIASE domain NDN18_10475 PF09312 SurA N-terminal domain NDN18_10480 PF00216 Bacterial DNA-binding protein NDN18_10495 PF02082 Transcriptional regulator NDN18_10500 PF00266 Aminotransferase class-V NDN18_10505 PF01592 NifU-like N terminal domain NDN18_10510 PF01521 Iron-sulphur cluster biosynthesis NDN18_10515 PF07743 HSCB C-terminal oligomerisation domain NDN18_10515 PF00226 DnaJ domain NDN18_10520 PF00012 Hsp70 protein NDN18_10525 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_10530 PF00211 Adenylate and Guanylate cyclase catalytic domain NDN18_10540 PF17757 UvrB interaction domain NDN18_10540 PF03461 TRCF domain NDN18_10540 PF00271 Helicase conserved C-terminal domain NDN18_10540 PF02559 CarD-like/TRCF domain NDN18_10540 PF00270 DEAD/DEAH box helicase NDN18_10560 PF03737 Aldolase/RraA NDN18_10565 PF13460 NAD(P)H-binding NDN18_10570 PF01649 Ribosomal protein S20 NDN18_10580 PF00459 Inositol monophosphatase family NDN18_10595 PF00005 ABC transporter NDN18_10595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN18_10600 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_10605 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_10610 PF01432 Peptidase family M3 NDN18_10620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN18_10630 PF00593 TonB dependent receptor NDN18_10630 PF07715 TonB-dependent Receptor Plug Domain NDN18_10640 PF01618 MotA/TolQ/ExbB proton channel family NDN18_10645 PF02472 Biopolymer transport protein ExbD/TolR NDN18_10650 PF02472 Biopolymer transport protein ExbD/TolR NDN18_10660 PF01274 Malate synthase NDN18_10665 PF03969 AFG1-like ATPase NDN18_10675 PF00743 Flavin-binding monooxygenase-like NDN18_10685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NDN18_10695 PF00216 Bacterial DNA-binding protein NDN18_10700 PF00575 S1 RNA binding domain NDN18_10705 PF02224 Cytidylate kinase NDN18_10715 PF14437 MafB19-like deaminase NDN18_10725 PF03167 Uracil DNA glycosylase superfamily NDN18_10735 PF03934 Type II secretion system (T2SS), protein K NDN18_10740 PF07963 Prokaryotic N-terminal methylation motif NDN18_10740 PF11612 Type II secretion system (T2SS), protein J NDN18_10745 PF07963 Prokaryotic N-terminal methylation motif NDN18_10745 PF02501 Type II secretion system (T2SS), protein I NDN18_10760 PF01026 TatD related DNase NDN18_10770 PF09115 DNA polymerase III, delta subunit, C terminal NDN18_10775 PF02348 Cytidylyltransferase NDN18_10780 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NDN18_10785 PF00005 ABC transporter NDN18_10785 PF00664 ABC transporter transmembrane region NDN18_10795 PF01618 MotA/TolQ/ExbB proton channel family NDN18_10800 PF17762 HTH domain found in ParB protein NDN18_10800 PF02195 ParB-like nuclease domain NDN18_10805 PF13614 AAA domain NDN18_10810 PF02527 rRNA small subunit methyltransferase G NDN18_10815 PF00483 Nucleotidyl transferase NDN18_10820 PF01636 Phosphotransferase enzyme family NDN18_10825 PF03968 OstA-like protein NDN18_10825 PF04453 LPS transport system D NDN18_10830 PF00639 PPIC-type PPIASE domain NDN18_10830 PF09312 SurA N-terminal domain NDN18_10835 PF01116 Fructose-bisphosphate aldolase class-II NDN18_10845 PF00162 Phosphoglycerate kinase NDN18_10855 PF02545 Maf-like protein NDN18_10860 PF08007 Cupin superfamily protein NDN18_10875 PF00375 Sodium:dicarboxylate symporter family NDN18_10880 PF06912 Protein of unknown function (DUF1275) NDN18_10885 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NDN18_10890 PF00664 ABC transporter transmembrane region NDN18_10890 PF00005 ABC transporter NDN18_10900 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN18_10900 PF12833 Helix-turn-helix domain NDN18_10905 PF01597 Glycine cleavage H-protein NDN18_10910 PF02146 Sir2 family NDN18_10915 PF00474 Sodium:solute symporter family NDN18_10920 PF01037 Lrp/AsnC ligand binding domain NDN18_10925 PF01619 Proline dehydrogenase NDN18_10925 PF14850 DNA-binding domain of Proline dehydrogenase NDN18_10925 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NDN18_10925 PF00171 Aldehyde dehydrogenase family NDN18_10930 PF04229 GrpB protein NDN18_10935 PF05958 tRNA (Uracil-5-)-methyltransferase NDN18_10945 PF09992 Phosphodiester glycosidase NDN18_10955 PF04264 YceI-like domain NDN18_10965 PF02779 Transketolase, pyrimidine binding domain NDN18_10965 PF02780 Transketolase, C-terminal domain NDN18_10965 PF00456 Transketolase, thiamine diphosphate binding domain NDN18_10970 PF00438 S-adenosylmethionine synthetase, N-terminal domain NDN18_10970 PF02772 S-adenosylmethionine synthetase, central domain NDN18_10970 PF02773 S-adenosylmethionine synthetase, C-terminal domain NDN18_10990 PF00905 Penicillin binding protein transpeptidase domain NDN18_11005 PF02075 Crossover junction endodeoxyribonuclease RuvC NDN18_11010 PF01256 Carbohydrate kinase NDN18_11010 PF03853 YjeF-related protein N-terminus NDN18_11015 PF08331 Domain of unknown function (DUF1730) NDN18_11020 PF06968 Biotin and Thiamin Synthesis associated domain NDN18_11020 PF04055 Radical SAM superfamily NDN18_11035 PF16970 Type-1 fimbrial protein, A NDN18_11040 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN18_11040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN18_11045 PF00577 Outer membrane usher protein NDN18_11045 PF13954 PapC N-terminal domain NDN18_11045 PF13953 PapC C-terminal domain NDN18_11065 PF00892 EamA-like transporter family NDN18_11075 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NDN18_11085 PF03466 LysR substrate binding domain NDN18_11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11105 PF00440 Bacterial regulatory proteins, tetR family NDN18_11115 PF01709 Transcriptional regulator NDN18_11120 PF01037 Lrp/AsnC ligand binding domain NDN18_11130 PF00005 ABC transporter NDN18_11135 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11140 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11155 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN18_11155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_11165 PF00296 Luciferase-like monooxygenase NDN18_11170 PF03180 NLPA lipoprotein NDN18_11175 PF03180 NLPA lipoprotein NDN18_11180 PF00005 ABC transporter NDN18_11180 PF09383 NIL domain NDN18_11185 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11190 PF01926 50S ribosome-binding GTPase NDN18_11190 PF06071 Protein of unknown function (DUF933) NDN18_11215 PF03591 AzlC protein NDN18_11220 PF05437 Branched-chain amino acid transport protein (AzlD) NDN18_11230 PF02222 ATP-grasp domain NDN18_11235 PF08335 GlnD PII-uridylyltransferase NDN18_11235 PF01966 HD domain NDN18_11235 PF01909 Nucleotidyltransferase domain NDN18_11240 PF00155 Aminotransferase class I and II NDN18_11250 PF12833 Helix-turn-helix domain NDN18_11250 PF12852 Cupin NDN18_11255 PF00255 Glutathione peroxidase NDN18_11260 PF01641 SelR domain NDN18_11265 PF00155 Aminotransferase class I and II NDN18_11270 PF00375 Sodium:dicarboxylate symporter family NDN18_11275 PF00710 Asparaginase, N-terminal NDN18_11275 PF17763 Glutaminase/Asparaginase C-terminal domain NDN18_11280 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDN18_11280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDN18_11280 PF14579 Helix-hairpin-helix motif NDN18_11280 PF02811 PHP domain NDN18_11280 PF01336 OB-fold nucleic acid binding domain NDN18_11285 PF00588 SpoU rRNA Methylase family NDN18_11290 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_11305 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_11305 PF13192 Thioredoxin domain NDN18_11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11320 PF03466 LysR substrate binding domain NDN18_11325 PF01758 Sodium Bile acid symporter family NDN18_11330 PF01022 Bacterial regulatory protein, arsR family NDN18_11335 PF03960 ArsC family NDN18_11345 PF13382 Adenine deaminase C-terminal domain NDN18_11345 PF01979 Amidohydrolase family NDN18_11355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11355 PF03466 LysR substrate binding domain NDN18_11365 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NDN18_11370 PF01177 Asp/Glu/Hydantoin racemase NDN18_11375 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDN18_11380 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11385 PF00005 ABC transporter NDN18_11390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NDN18_11400 PF00083 Sugar (and other) transporter NDN18_11405 PF00296 Luciferase-like monooxygenase NDN18_11410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_11410 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_11410 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN18_11420 PF01654 Cytochrome bd terminal oxidase subunit I NDN18_11425 PF02322 Cytochrome bd terminal oxidase subunit II NDN18_11435 PF00392 Bacterial regulatory proteins, gntR family NDN18_11435 PF00155 Aminotransferase class I and II NDN18_11440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11440 PF03466 LysR substrate binding domain NDN18_11455 PF00698 Acyl transferase domain NDN18_11460 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG NDN18_11470 PF01039 Carboxyl transferase domain NDN18_11475 PF06857 Malonate decarboxylase delta subunit (MdcD) NDN18_11480 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase NDN18_11485 PF16957 Malonate decarboxylase, alpha subunit, transporter NDN18_11490 PF00106 short chain dehydrogenase NDN18_11510 PF00392 Bacterial regulatory proteins, gntR family NDN18_11510 PF00155 Aminotransferase class I and II NDN18_11515 PF04172 LrgB-like family NDN18_11520 PF03788 LrgA family NDN18_11525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11525 PF03466 LysR substrate binding domain NDN18_11530 PF14834 Glutathione S-transferase, C-terminal domain NDN18_11530 PF02798 Glutathione S-transferase, N-terminal domain NDN18_11535 PF02798 Glutathione S-transferase, N-terminal domain NDN18_11540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11540 PF03466 LysR substrate binding domain NDN18_11550 PF00581 Rhodanese-like domain NDN18_11555 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_11565 PF00266 Aminotransferase class-V NDN18_11575 PF01810 LysE type translocator NDN18_11580 PF03466 LysR substrate binding domain NDN18_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11590 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN18_11595 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN18_11600 PF00005 ABC transporter NDN18_11605 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11610 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11625 PF07690 Major Facilitator Superfamily NDN18_11630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11630 PF03466 LysR substrate binding domain NDN18_11640 PF02129 X-Pro dipeptidyl-peptidase (S15 family) NDN18_11645 PF00072 Response regulator receiver domain NDN18_11650 PF00072 Response regulator receiver domain NDN18_11650 PF09308 LuxQ, periplasmic NDN18_11650 PF00512 His Kinase A (phospho-acceptor) domain NDN18_11650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_11660 PF01037 Lrp/AsnC ligand binding domain NDN18_11660 PF13404 AsnC-type helix-turn-helix domain NDN18_11670 PF00717 Peptidase S24-like NDN18_11695 PF18011 C-terminal domain found in long catalases NDN18_11695 PF06628 Catalase-related immune-responsive NDN18_11695 PF00199 Catalase NDN18_11705 PF00994 Probable molybdopterin binding domain NDN18_11705 PF02464 Competence-damaged protein NDN18_11705 PF18146 Damage-inducible protein CinA KH domain NDN18_11740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11740 PF03466 LysR substrate binding domain NDN18_11765 PF00440 Bacterial regulatory proteins, tetR family NDN18_11770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_11770 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_11770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_11775 PF01039 Carboxyl transferase domain NDN18_11780 PF00378 Enoyl-CoA hydratase/isomerase NDN18_11785 PF02785 Biotin carboxylase C-terminal domain NDN18_11785 PF00289 Biotin carboxylase, N-terminal domain NDN18_11785 PF00364 Biotin-requiring enzyme NDN18_11785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN18_11785 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN18_11790 PF00682 HMGL-like NDN18_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11795 PF03466 LysR substrate binding domain NDN18_11810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_11810 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN18_11810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_11810 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_11820 PF07690 Major Facilitator Superfamily NDN18_11830 PF01144 Coenzyme A transferase NDN18_11835 PF01144 Coenzyme A transferase NDN18_11840 PF07690 Major Facilitator Superfamily NDN18_11845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_11845 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_11845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_11850 PF00378 Enoyl-CoA hydratase/isomerase NDN18_11860 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NDN18_11860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN18_11860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN18_11865 PF02803 Thiolase, C-terminal domain NDN18_11865 PF00108 Thiolase, N-terminal domain NDN18_11870 PF09339 IclR helix-turn-helix domain NDN18_11875 PF07690 Major Facilitator Superfamily NDN18_11880 PF03060 Nitronate monooxygenase NDN18_11885 PF00378 Enoyl-CoA hydratase/isomerase NDN18_11890 PF09339 IclR helix-turn-helix domain NDN18_11895 PF02515 CoA-transferase family III NDN18_11900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_11900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_11900 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_11905 PF07690 Major Facilitator Superfamily NDN18_11910 PF13419 Haloacid dehalogenase-like hydrolase NDN18_11915 PF00266 Aminotransferase class-V NDN18_11920 PF01266 FAD dependent oxidoreductase NDN18_11925 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_11930 PF00005 ABC transporter NDN18_11930 PF08402 TOBE domain NDN18_11940 PF07702 UTRA domain NDN18_11940 PF00392 Bacterial regulatory proteins, gntR family NDN18_11945 PF01494 FAD binding domain NDN18_11950 PF09339 IclR helix-turn-helix domain NDN18_11950 PF01614 Bacterial transcriptional regulator NDN18_11955 PF02525 Flavodoxin-like fold NDN18_11960 PF03466 LysR substrate binding domain NDN18_11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_11965 PF02627 Carboxymuconolactone decarboxylase family NDN18_11970 PF00171 Aldehyde dehydrogenase family NDN18_11980 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NDN18_11990 PF00171 Aldehyde dehydrogenase family NDN18_11995 PF00296 Luciferase-like monooxygenase NDN18_12000 PF01613 Flavin reductase like domain NDN18_12005 PF12697 Alpha/beta hydrolase family NDN18_12025 PF01292 Prokaryotic cytochrome b561 NDN18_12030 PF00199 Catalase NDN18_12035 PF07690 Major Facilitator Superfamily NDN18_12040 PF00682 HMGL-like NDN18_12045 PF02515 CoA-transferase family III NDN18_12060 PF12833 Helix-turn-helix domain NDN18_12060 PF06719 AraC-type transcriptional regulator N-terminus NDN18_12075 PF02151 UvrB/uvrC motif NDN18_12075 PF04851 Type III restriction enzyme, res subunit NDN18_12075 PF00271 Helicase conserved C-terminal domain NDN18_12075 PF12344 Ultra-violet resistance protein B NDN18_12075 PF17757 UvrB interaction domain NDN18_12085 PF03061 Thioesterase superfamily NDN18_12090 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_12095 PF07848 PaaX-like protein NDN18_12095 PF08223 PaaX-like protein C-terminal domain NDN18_12100 PF00501 AMP-binding enzyme NDN18_12100 PF14535 AMP-binding enzyme C-terminal domain NDN18_12105 PF00108 Thiolase, N-terminal domain NDN18_12105 PF02803 Thiolase, C-terminal domain NDN18_12110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN18_12110 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NDN18_12110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN18_12115 PF00378 Enoyl-CoA hydratase/isomerase NDN18_12120 PF00378 Enoyl-CoA hydratase/isomerase NDN18_12125 PF00970 Oxidoreductase FAD-binding domain NDN18_12125 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_12125 PF00175 Oxidoreductase NAD-binding domain NDN18_12130 PF01883 Iron-sulfur cluster assembly protein NDN18_12135 PF05138 Phenylacetic acid catabolic protein NDN18_12140 PF06243 Phenylacetic acid degradation B NDN18_12145 PF05138 Phenylacetic acid catabolic protein NDN18_12150 PF01575 MaoC like domain NDN18_12150 PF00171 Aldehyde dehydrogenase family NDN18_12155 PF03315 Serine dehydratase beta chain NDN18_12155 PF03313 Serine dehydratase alpha chain NDN18_12160 PF13520 Amino acid permease NDN18_12165 PF00171 Aldehyde dehydrogenase family NDN18_12170 PF00083 Sugar (and other) transporter NDN18_12180 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_12180 PF04324 BFD-like [2Fe-2S] binding domain NDN18_12190 PF01266 FAD dependent oxidoreductase NDN18_12195 PF05544 Proline racemase NDN18_12200 PF00392 Bacterial regulatory proteins, gntR family NDN18_12210 PF00701 Dihydrodipicolinate synthetase family NDN18_12220 PF00376 MerR family regulatory protein NDN18_12220 PF09278 MerR, DNA binding NDN18_12230 PF02677 Epoxyqueuosine reductase QueH NDN18_12245 PF07690 Major Facilitator Superfamily NDN18_12250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN18_12260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_12260 PF03466 LysR substrate binding domain NDN18_12280 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NDN18_12285 PF06812 ImpA, N-terminal, type VI secretion system NDN18_12290 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_12290 PF17871 AAA lid domain NDN18_12290 PF10431 C-terminal, D2-small domain, of ClpB protein NDN18_12290 PF07724 AAA domain (Cdc48 subfamily) NDN18_12305 PF01389 OmpA-like transmembrane domain NDN18_12305 PF00691 OmpA family NDN18_12315 PF06761 Intracellular multiplication and human macrophage-killing NDN18_12315 PF14331 ImcF-related N-terminal domain NDN18_12315 PF06744 Type VI secretion protein IcmF C-terminal NDN18_12330 PF05947 Type VI secretion system, TssF NDN18_12345 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NDN18_12390 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN18_12390 PF04717 Type VI secretion system, phage-baseplate injector NDN18_12390 PF13296 Putative type VI secretion system Rhs element Vgr NDN18_12405 PF00005 ABC transporter NDN18_12410 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN18_12415 PF01425 Amidase NDN18_12420 PF08753 NikR C terminal nickel binding domain NDN18_12420 PF01402 Ribbon-helix-helix protein, copG family NDN18_12430 PF01638 HxlR-like helix-turn-helix NDN18_12435 PF02525 Flavodoxin-like fold NDN18_12440 PF02785 Biotin carboxylase C-terminal domain NDN18_12440 PF00289 Biotin carboxylase, N-terminal domain NDN18_12440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN18_12455 PF00107 Zinc-binding dehydrogenase NDN18_12455 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_12455 PF13823 Alcohol dehydrogenase GroES-associated NDN18_12465 PF00440 Bacterial regulatory proteins, tetR family NDN18_12475 PF04829 Pre-toxin domain with VENN motif NDN18_12475 PF13018 Extended Signal Peptide of Type V secretion system NDN18_12475 PF05860 haemagglutination activity domain NDN18_12475 PF13332 Hemagglutinin repeat NDN18_12480 PF08479 POTRA domain, ShlB-type NDN18_12480 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB NDN18_12480 PF17287 POTRA domain NDN18_12485 PF00654 Voltage gated chloride channel NDN18_12490 PF02785 Biotin carboxylase C-terminal domain NDN18_12490 PF00289 Biotin carboxylase, N-terminal domain NDN18_12490 PF00364 Biotin-requiring enzyme NDN18_12490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN18_12500 PF07286 Protein of unknown function (DUF1445) NDN18_12505 PF03746 LamB/YcsF family NDN18_12510 PF01566 Natural resistance-associated macrophage protein NDN18_12515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_12515 PF03466 LysR substrate binding domain NDN18_12535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN18_12535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN18_12555 PF07690 Major Facilitator Superfamily NDN18_12575 PF01544 CorA-like Mg2+ transporter protein NDN18_12580 PF03279 Bacterial lipid A biosynthesis acyltransferase NDN18_12585 PF00563 EAL domain NDN18_12585 PF00990 Diguanylate cyclase, GGDEF domain NDN18_12585 PF03707 Bacterial signalling protein N terminal repeat NDN18_12590 PF00892 EamA-like transporter family NDN18_12595 PF01037 Lrp/AsnC ligand binding domain NDN18_12600 PF00488 MutS domain V NDN18_12600 PF05192 MutS domain III NDN18_12600 PF05188 MutS domain II NDN18_12600 PF01624 MutS domain I NDN18_12600 PF05190 MutS family domain IV NDN18_12610 PF11953 Domain of unknown function (DUF3470) NDN18_12610 PF00037 4Fe-4S binding domain NDN18_12620 PF01596 O-methyltransferase NDN18_12630 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_12635 PF01205 Uncharacterized protein family UPF0029 NDN18_12645 PF00664 ABC transporter transmembrane region NDN18_12645 PF00005 ABC transporter NDN18_12645 PF03412 Peptidase C39 family NDN18_12650 PF02321 Outer membrane efflux protein NDN18_12655 PF00005 ABC transporter NDN18_12655 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN18_12660 PF03968 OstA-like protein NDN18_12675 PF01380 SIS domain NDN18_12675 PF00571 CBS domain NDN18_12680 PF09190 DALR domain NDN18_12680 PF01406 tRNA synthetases class I (C) catalytic domain NDN18_12690 PF00589 Phage integrase family NDN18_12820 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) NDN18_12840 PF06381 Protein of unknown function (DUF1073) NDN18_12940 PF01726 LexA DNA binding domain NDN18_12940 PF00717 Peptidase S24-like NDN18_12945 PF01555 DNA methylase NDN18_13015 PF01638 HxlR-like helix-turn-helix NDN18_13020 PF07690 Major Facilitator Superfamily NDN18_13045 PF03807 NADP oxidoreductase coenzyme F420-dependent NDN18_13045 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDN18_13055 PF00313 'Cold-shock' DNA-binding domain NDN18_13060 PF01810 LysE type translocator NDN18_13090 PF02601 Exonuclease VII, large subunit NDN18_13090 PF13742 OB-fold nucleic acid binding domain NDN18_13125 PF00376 MerR family regulatory protein NDN18_13125 PF09278 MerR, DNA binding NDN18_13130 PF00403 Heavy-metal-associated domain NDN18_13140 PF06505 Activator of aromatic catabolism NDN18_13140 PF02830 V4R domain NDN18_13140 PF00158 Sigma-54 interaction domain NDN18_13140 PF02954 Bacterial regulatory protein, Fis family NDN18_13155 PF02332 Methane/Phenol/Toluene Hydroxylase NDN18_13160 PF02406 MmoB/DmpM family NDN18_13165 PF02332 Methane/Phenol/Toluene Hydroxylase NDN18_13165 PF04945 YHS domain NDN18_13175 PF00970 Oxidoreductase FAD-binding domain NDN18_13175 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_13175 PF00175 Oxidoreductase NAD-binding domain NDN18_13185 PF03466 LysR substrate binding domain NDN18_13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_13195 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN18_13195 PF00355 Rieske [2Fe-2S] domain NDN18_13205 PF00970 Oxidoreductase FAD-binding domain NDN18_13205 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_13205 PF00175 Oxidoreductase NAD-binding domain NDN18_13210 PF00106 short chain dehydrogenase NDN18_13215 PF03594 Benzoate membrane transport protein NDN18_13220 PF07690 Major Facilitator Superfamily NDN18_13230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDN18_13230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDN18_13235 PF00271 Helicase conserved C-terminal domain NDN18_13235 PF04408 Helicase associated domain (HA2) NDN18_13235 PF11898 Domain of unknown function (DUF3418) NDN18_13235 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NDN18_13235 PF00270 DEAD/DEAH box helicase NDN18_13240 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN18_13240 PF00578 AhpC/TSA family NDN18_13260 PF13192 Thioredoxin domain NDN18_13260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_13270 PF00043 Glutathione S-transferase, C-terminal domain NDN18_13270 PF02798 Glutathione S-transferase, N-terminal domain NDN18_13280 PF02390 Putative methyltransferase NDN18_13285 PF00043 Glutathione S-transferase, C-terminal domain NDN18_13285 PF13417 Glutathione S-transferase, N-terminal domain NDN18_13295 PF13488 Glycine zipper NDN18_13295 PF00691 OmpA family NDN18_13300 PF01979 Amidohydrolase family NDN18_13305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN18_13305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN18_13315 PF10672 S-adenosylmethionine-dependent methyltransferase NDN18_13315 PF02926 THUMP domain NDN18_13315 PF01170 Putative RNA methylase family UPF0020 NDN18_13330 PF10431 C-terminal, D2-small domain, of ClpB protein NDN18_13330 PF02861 Clp amino terminal domain, pathogenicity island component NDN18_13330 PF17871 AAA lid domain NDN18_13330 PF07724 AAA domain (Cdc48 subfamily) NDN18_13330 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_13345 PF02566 OsmC-like protein NDN18_13355 PF13545 Crp-like helix-turn-helix domain NDN18_13355 PF00027 Cyclic nucleotide-binding domain NDN18_13360 PF00248 Aldo/keto reductase family NDN18_13375 PF00709 Adenylosuccinate synthetase NDN18_13380 PF13393 Histidyl-tRNA synthetase NDN18_13385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN18_13385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN18_13390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN18_13390 PF01411 tRNA synthetases class II (A) NDN18_13390 PF02272 DHHA1 domain NDN18_13395 PF00696 Amino acid kinase family NDN18_13395 PF13840 ACT domain NDN18_13395 PF01842 ACT domain NDN18_13400 PF02599 Global regulator protein family NDN18_13405 PF01351 Ribonuclease HII NDN18_13415 PF01292 Prokaryotic cytochrome b561 NDN18_13420 PF00962 Adenosine/AMP deaminase NDN18_13425 PF00860 Permease family NDN18_13435 PF00743 Flavin-binding monooxygenase-like NDN18_13440 PF00106 short chain dehydrogenase NDN18_13450 PF17954 Quercetinase C-terminal cupin domain NDN18_13450 PF02678 Pirin NDN18_13455 PF17932 Tetracyclin repressor-like, C-terminal domain NDN18_13455 PF00440 Bacterial regulatory proteins, tetR family NDN18_13465 PF00106 short chain dehydrogenase NDN18_13470 PF00743 Flavin-binding monooxygenase-like NDN18_13475 PF04072 Leucine carboxyl methyltransferase NDN18_13480 PF12833 Helix-turn-helix domain NDN18_13485 PF00743 Flavin-binding monooxygenase-like NDN18_13490 PF00106 short chain dehydrogenase NDN18_13495 PF07859 alpha/beta hydrolase fold NDN18_13500 PF05199 GMC oxidoreductase NDN18_13505 PF03573 outer membrane porin, OprD family NDN18_13510 PF07690 Major Facilitator Superfamily NDN18_13515 PF00884 Sulfatase NDN18_13520 PF03781 Sulfatase-modifying factor enzyme 1 NDN18_13530 PF00355 Rieske [2Fe-2S] domain NDN18_13535 PF00175 Oxidoreductase NAD-binding domain NDN18_13535 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_13550 PF07690 Major Facilitator Superfamily NDN18_13555 PF00378 Enoyl-CoA hydratase/isomerase NDN18_13560 PF00171 Aldehyde dehydrogenase family NDN18_13570 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_13570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_13570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_13575 PF03573 outer membrane porin, OprD family NDN18_13590 PF07519 Tannase and feruloyl esterase NDN18_13595 PF00392 Bacterial regulatory proteins, gntR family NDN18_13595 PF07729 FCD domain NDN18_13600 PF00171 Aldehyde dehydrogenase family NDN18_13605 PF00701 Dihydrodipicolinate synthetase family NDN18_13610 PF13378 Enolase C-terminal domain-like NDN18_13615 PF07690 Major Facilitator Superfamily NDN18_13620 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus NDN18_13620 PF08666 SAF domain NDN18_13625 PF00892 EamA-like transporter family NDN18_13630 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN18_13630 PF12833 Helix-turn-helix domain NDN18_13635 PF00171 Aldehyde dehydrogenase family NDN18_13640 PF00324 Amino acid permease NDN18_13645 PF04958 Arginine N-succinyltransferase beta subunit NDN18_13650 PF00202 Aminotransferase class-III NDN18_13660 PF00171 Aldehyde dehydrogenase family NDN18_13670 PF07729 FCD domain NDN18_13670 PF00392 Bacterial regulatory proteins, gntR family NDN18_13680 PF00324 Amino acid permease NDN18_13685 PF01266 FAD dependent oxidoreductase NDN18_13690 PF00324 Amino acid permease NDN18_13700 PF05643 Putative bacterial lipoprotein (DUF799) NDN18_13710 PF03783 Curli production assembly/transport component CsgG NDN18_13725 PF02803 Thiolase, C-terminal domain NDN18_13725 PF00108 Thiolase, N-terminal domain NDN18_13730 PF01144 Coenzyme A transferase NDN18_13735 PF01144 Coenzyme A transferase NDN18_13750 PF00775 Dioxygenase NDN18_13750 PF04444 Catechol dioxygenase N terminus NDN18_13755 PF00465 Iron-containing alcohol dehydrogenase NDN18_13760 PF00171 Aldehyde dehydrogenase family NDN18_13775 PF07690 Major Facilitator Superfamily NDN18_13780 PF03466 LysR substrate binding domain NDN18_13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_13790 PF03781 Sulfatase-modifying factor enzyme 1 NDN18_13795 PF00884 Sulfatase NDN18_13810 PF03180 NLPA lipoprotein NDN18_13820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN18_13820 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_13830 PF00764 Arginosuccinate synthase NDN18_13835 PF00360 Phytochrome region NDN18_13835 PF00563 EAL domain NDN18_13835 PF01590 GAF domain NDN18_13835 PF00990 Diguanylate cyclase, GGDEF domain NDN18_13840 PF01979 Amidohydrolase family NDN18_13845 PF00929 Exonuclease NDN18_13855 PF07715 TonB-dependent Receptor Plug Domain NDN18_13855 PF00593 TonB dependent receptor NDN18_13860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN18_13860 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_13865 PF00005 ABC transporter NDN18_13865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN18_13870 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN18_13870 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_13875 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_13880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN18_13885 PF01476 LysM domain NDN18_13885 PF01464 Transglycosylase SLT domain NDN18_13885 PF01476 LysM domain NDN18_13885 PF01464 Transglycosylase SLT domain NDN18_13890 PF00929 Exonuclease NDN18_13900 PF09297 NADH pyrophosphatase zinc ribbon domain NDN18_13900 PF00293 NUDIX domain NDN18_13910 PF04972 BON domain NDN18_13915 PF02021 Uncharacterised protein family UPF0102 NDN18_13920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN18_13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_13930 PF03466 LysR substrate binding domain NDN18_13935 PF01810 LysE type translocator NDN18_13945 PF13411 MerR HTH family regulatory protein NDN18_13955 PF01494 FAD binding domain NDN18_13960 PF01494 FAD binding domain NDN18_13965 PF00557 Metallopeptidase family M24 NDN18_13965 PF05195 Aminopeptidase P, N-terminal domain NDN18_14005 PF01812 5-formyltetrahydrofolate cyclo-ligase family NDN18_14010 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN18_14010 PF02190 ATP-dependent protease La (LON) substrate-binding domain NDN18_14010 PF00004 ATPase family associated with various cellular activities (AAA) NDN18_14015 PF02590 Predicted SPOUT methyltransferase NDN18_14020 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDN18_14030 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN18_14030 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN18_14035 PF04060 Putative Fe-S cluster NDN18_14040 PF10576 Iron-sulfur binding domain of endonuclease III NDN18_14040 PF00633 Helix-hairpin-helix motif NDN18_14040 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN18_14050 PF05191 Adenylate kinase, active site lid NDN18_14065 PF03717 Penicillin-binding Protein dimerisation domain NDN18_14065 PF00905 Penicillin binding protein transpeptidase domain NDN18_14080 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN18_14085 PF01730 UreF NDN18_14090 PF05194 UreE urease accessory protein, C-terminal domain NDN18_14090 PF02814 UreE urease accessory protein, N-terminal domain NDN18_14095 PF01979 Amidohydrolase family NDN18_14095 PF00449 Urease alpha-subunit, N-terminal domain NDN18_14100 PF00699 Urease beta subunit NDN18_14105 PF00547 Urease, gamma subunit NDN18_14110 PF01774 UreD urease accessory protein NDN18_14125 PF00463 Isocitrate lyase family NDN18_14130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_14130 PF03466 LysR substrate binding domain NDN18_14135 PF00571 CBS domain NDN18_14135 PF03471 Transporter associated domain NDN18_14135 PF01595 Cyclin M transmembrane N-terminal domain NDN18_14140 PF03600 Citrate transporter NDN18_14155 PF00009 Elongation factor Tu GTP binding domain NDN18_14160 PF01507 Phosphoadenosine phosphosulfate reductase family NDN18_14170 PF14052 Capsule assembly protein Wzi NDN18_14175 PF00152 tRNA synthetases class II (D, K and N) NDN18_14175 PF01336 OB-fold nucleic acid binding domain NDN18_14190 PF00301 Rubredoxin NDN18_14195 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_14195 PF18113 Rubredoxin binding C-terminal domain NDN18_14200 PF00561 alpha/beta hydrolase fold NDN18_14205 PF03466 LysR substrate binding domain NDN18_14205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_14220 PF02503 Polyphosphate kinase middle domain NDN18_14220 PF13090 Polyphosphate kinase C-terminal domain 2 NDN18_14220 PF17941 Polyphosphate kinase C-terminal domain 1 NDN18_14220 PF13089 Polyphosphate kinase N-terminal domain NDN18_14225 PF00912 Transglycosylase NDN18_14230 PF01694 Rhomboid family NDN18_14240 PF00005 ABC transporter NDN18_14245 PF13472 GDSL-like Lipase/Acylhydrolase family NDN18_14250 PF00484 Carbonic anhydrase NDN18_14255 PF00561 alpha/beta hydrolase fold NDN18_14265 PF07715 TonB-dependent Receptor Plug Domain NDN18_14265 PF00593 TonB dependent receptor NDN18_14270 PF01106 NifU-like domain NDN18_14270 PF01521 Iron-sulphur cluster biosynthesis NDN18_14280 PF00884 Sulfatase NDN18_14285 PF03781 Sulfatase-modifying factor enzyme 1 NDN18_14300 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_14305 PF01384 Phosphate transporter family NDN18_14310 PF02310 B12 binding domain NDN18_14310 PF02607 B12 binding domain NDN18_14310 PF02965 Vitamin B12 dependent methionine synthase, activation domain NDN18_14310 PF00809 Pterin binding enzyme NDN18_14310 PF02574 Homocysteine S-methyltransferase NDN18_14315 PF02779 Transketolase, pyrimidine binding domain NDN18_14315 PF02780 Transketolase, C-terminal domain NDN18_14320 PF00456 Transketolase, thiamine diphosphate binding domain NDN18_14325 PF07690 Major Facilitator Superfamily NDN18_14335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_14335 PF03466 LysR substrate binding domain NDN18_14345 PF01263 Aldose 1-epimerase NDN18_14350 PF07690 Major Facilitator Superfamily NDN18_14355 PF12833 Helix-turn-helix domain NDN18_14355 PF02311 AraC-like ligand binding domain NDN18_14360 PF04960 Glutaminase NDN18_14365 PF01327 Polypeptide deformylase NDN18_14370 PF07690 Major Facilitator Superfamily NDN18_14380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN18_14380 PF00205 Thiamine pyrophosphate enzyme, central domain NDN18_14380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN18_14385 PF00171 Aldehyde dehydrogenase family NDN18_14390 PF01958 Domain of unknown function DUF108 NDN18_14390 PF03447 Homoserine dehydrogenase, NAD binding domain NDN18_14400 PF12697 Alpha/beta hydrolase family NDN18_14410 PF07690 Major Facilitator Superfamily NDN18_14415 PF14759 Reductase C-terminal NDN18_14415 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_14420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN18_14430 PF00355 Rieske [2Fe-2S] domain NDN18_14440 PF00355 Rieske [2Fe-2S] domain NDN18_14445 PF09339 IclR helix-turn-helix domain NDN18_14445 PF01614 Bacterial transcriptional regulator NDN18_14460 PF00378 Enoyl-CoA hydratase/isomerase NDN18_14470 PF00535 Glycosyl transferase family 2 NDN18_14475 PF14883 Hypothetical glycosyl hydrolase family 13 NDN18_14475 PF01522 Polysaccharide deacetylase NDN18_14480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN18_14485 PF07152 YaeQ protein NDN18_14490 PF00375 Sodium:dicarboxylate symporter family NDN18_14495 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN18_14495 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN18_14505 PF03061 Thioesterase superfamily NDN18_14515 PF02028 BCCT, betaine/carnitine/choline family transporter NDN18_14520 PF02028 BCCT, betaine/carnitine/choline family transporter NDN18_14525 PF13977 BetI-type transcriptional repressor, C-terminal NDN18_14525 PF00440 Bacterial regulatory proteins, tetR family NDN18_14530 PF00171 Aldehyde dehydrogenase family NDN18_14535 PF05199 GMC oxidoreductase NDN18_14535 PF00732 GMC oxidoreductase NDN18_14540 PF06039 Malate:quinone oxidoreductase (Mqo) NDN18_14550 PF02574 Homocysteine S-methyltransferase NDN18_14555 PF13520 Amino acid permease NDN18_14580 PF01126 Heme oxygenase NDN18_14590 PF04575 Protein of unknown function (DUF560) NDN18_14600 PF07715 TonB-dependent Receptor Plug Domain NDN18_14600 PF00593 TonB dependent receptor NDN18_14610 PF04542 Sigma-70 region 2 NDN18_14610 PF08281 Sigma-70, region 4 NDN18_14620 PF00701 Dihydrodipicolinate synthetase family NDN18_14625 PF00083 Sugar (and other) transporter NDN18_14635 PF04851 Type III restriction enzyme, res subunit NDN18_14635 PF00271 Helicase conserved C-terminal domain NDN18_14635 PF08463 EcoEI R protein C-terminal NDN18_14635 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NDN18_14645 PF12161 HsdM N-terminal domain NDN18_14645 PF02384 N-6 DNA Methylase NDN18_14705 PF07690 Major Facilitator Superfamily NDN18_14710 PF13533 Biotin-lipoyl like NDN18_14715 PF03061 Thioesterase superfamily NDN18_14720 PF00490 Delta-aminolevulinic acid dehydratase NDN18_14725 PF01266 FAD dependent oxidoreductase NDN18_14730 PF08338 Domain of unknown function (DUF1731) NDN18_14730 PF01370 NAD dependent epimerase/dehydratase family NDN18_14750 PF00149 Calcineurin-like phosphoesterase NDN18_14750 PF12320 Type 5 capsule protein repressor C-terminal domain NDN18_14760 PF01168 Alanine racemase, N-terminal domain NDN18_14765 PF00437 Type II/IV secretion system protein NDN18_14770 PF00437 Type II/IV secretion system protein NDN18_14775 PF01475 Ferric uptake regulator family NDN18_14780 PF04355 SmpA / OmlA family NDN18_14785 PF03658 RnfH family Ubiquitin NDN18_14795 PF01814 Hemerythrin HHE cation binding domain NDN18_14800 PF13230 Glutamine amidotransferases class-II NDN18_14810 PF00696 Amino acid kinase family NDN18_14815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN18_14815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN18_14815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN18_14815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN18_14820 PF00692 dUTPase NDN18_14825 PF00580 UvrD/REP helicase N-terminal domain NDN18_14825 PF13361 UvrD-like helicase C-terminal domain NDN18_14830 PF13488 Glycine zipper NDN18_14830 PF00691 OmpA family NDN18_14835 PF01553 Acyltransferase NDN18_14845 PF03775 Septum formation inhibitor MinC, C-terminal domain NDN18_14850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NDN18_14855 PF03776 Septum formation topological specificity factor MinE NDN18_14870 PF01810 LysE type translocator NDN18_14875 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NDN18_14875 PF17854 FtsK alpha domain NDN18_14875 PF09397 Ftsk gamma domain NDN18_14875 PF01580 FtsK/SpoIIIE family NDN18_14880 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_14885 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NDN18_14890 PF04377 Arginine-tRNA-protein transferase, C terminus NDN18_14890 PF04376 Arginine-tRNA-protein transferase, N terminus NDN18_14895 PF00583 Acetyltransferase (GNAT) family NDN18_14910 PF03143 Elongation factor Tu C-terminal domain NDN18_14910 PF00009 Elongation factor Tu GTP binding domain NDN18_14910 PF03144 Elongation factor Tu domain 2 NDN18_14915 PF14492 Elongation Factor G, domain II NDN18_14915 PF03764 Elongation factor G, domain IV NDN18_14915 PF00009 Elongation factor Tu GTP binding domain NDN18_14915 PF03144 Elongation factor Tu domain 2 NDN18_14915 PF00679 Elongation factor G C-terminus NDN18_14920 PF00177 Ribosomal protein S7p/S5e NDN18_14925 PF00164 Ribosomal protein S12/S23 NDN18_14935 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN18_14935 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN18_14940 PF03653 Uncharacterised protein family (UPF0093) NDN18_14945 PF05726 Pirin C-terminal cupin domain NDN18_14945 PF02678 Pirin NDN18_14955 PF00795 Carbon-nitrogen hydrolase NDN18_14955 PF02540 NAD synthase NDN18_14970 PF00970 Oxidoreductase FAD-binding domain NDN18_14970 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_14970 PF00175 Oxidoreductase NAD-binding domain NDN18_14975 PF00171 Aldehyde dehydrogenase family NDN18_14980 PF00355 Rieske [2Fe-2S] domain NDN18_14980 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN18_14985 PF07859 alpha/beta hydrolase fold NDN18_14990 PF02028 BCCT, betaine/carnitine/choline family transporter NDN18_14995 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN18_15000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_15000 PF03466 LysR substrate binding domain NDN18_15020 PF00037 4Fe-4S binding domain NDN18_15025 PF01467 Cytidylyltransferase-like NDN18_15030 PF01668 SmpB protein NDN18_15035 PF03358 NADPH-dependent FMN reductase NDN18_15040 PF02578 Multi-copper polyphenol oxidoreductase laccase NDN18_15045 PF00849 RNA pseudouridylate synthase NDN18_15045 PF01479 S4 domain NDN18_15050 PF13525 Outer membrane lipoprotein NDN18_15055 PF10410 DnaB-helicase binding domain of primase NDN18_15055 PF08278 DNA primase DnaG DnaB-binding NDN18_15055 PF08275 DNA primase catalytic core, N-terminal domain NDN18_15055 PF01807 CHC2 zinc finger NDN18_15060 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NDN18_15060 PF01488 Shikimate / quinate 5-dehydrogenase NDN18_15060 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NDN18_15070 PF03550 Outer membrane lipoprotein LolB NDN18_15075 PF08544 GHMP kinases C terminal NDN18_15075 PF00288 GHMP kinases N terminal domain NDN18_15100 PF14572 Phosphoribosyl synthetase-associated domain NDN18_15100 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN18_15105 PF01386 Ribosomal L25p family NDN18_15110 PF01195 Peptidyl-tRNA hydrolase NDN18_15115 PF02261 Aspartate decarboxylase NDN18_15130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN18_15140 PF02581 Thiamine monophosphate synthase NDN18_15140 PF03070 TENA/THI-4/PQQC family NDN18_15140 PF08543 Phosphomethylpyrimidine kinase NDN18_15145 PF04972 BON domain NDN18_15145 PF01476 LysM domain NDN18_15150 PF00550 Phosphopantetheine attachment site NDN18_15160 PF00698 Acyl transferase domain NDN18_15165 PF01783 Ribosomal L32p protein family NDN18_15170 PF02620 Large ribosomal RNA subunit accumulation protein YceD NDN18_15175 PF04315 Elongation factor P hydroxylase NDN18_15180 PF01300 Telomere recombination NDN18_15185 PF02616 Segregation and condensation protein ScpA NDN18_15190 PF04079 Segregation and condensation complex subunit ScpB NDN18_15195 PF01479 S4 domain NDN18_15195 PF00849 RNA pseudouridylate synthase NDN18_15210 PF00155 Aminotransferase class I and II NDN18_15215 PF04055 Radical SAM superfamily NDN18_15215 PF06968 Biotin and Thiamin Synthesis associated domain NDN18_15215 PF00202 Aminotransferase class-III NDN18_15220 PF08241 Methyltransferase domain NDN18_15220 PF12697 Alpha/beta hydrolase family NDN18_15225 PF02358 Trehalose-phosphatase NDN18_15230 PF00982 Glycosyltransferase family 20 NDN18_15235 PF07690 Major Facilitator Superfamily NDN18_15240 PF00210 Ferritin-like domain NDN18_15245 PF00533 BRCA1 C Terminus (BRCT) domain NDN18_15245 PF01653 NAD-dependent DNA ligase adenylation domain NDN18_15245 PF03120 NAD-dependent DNA ligase OB-fold domain NDN18_15245 PF12826 Helix-hairpin-helix motif NDN18_15245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NDN18_15255 PF06470 SMC proteins Flexible Hinge Domain NDN18_15255 PF02463 RecF/RecN/SMC N terminal domain NDN18_15265 PF01925 Sulfite exporter TauE/SafE NDN18_15275 PF03309 Type III pantothenate kinase NDN18_15280 PF02978 Signal peptide binding domain NDN18_15280 PF02881 SRP54-type protein, helical bundle domain NDN18_15280 PF00448 SRP54-type protein, GTPase domain NDN18_15290 PF01207 Dihydrouridine synthase (Dus) NDN18_15320 PF00692 dUTPase NDN18_15335 PF01048 Phosphorylase superfamily NDN18_15345 PF10609 NUBPL iron-transfer P-loop NTPase NDN18_15355 PF09334 tRNA synthetases class I (M) NDN18_15355 PF01588 Putative tRNA binding domain NDN18_15380 PF13533 Biotin-lipoyl like NDN18_15385 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_15400 PF05552 Conserved TM helix NDN18_15415 PF00970 Oxidoreductase FAD-binding domain NDN18_15415 PF00175 Oxidoreductase NAD-binding domain NDN18_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_15420 PF03466 LysR substrate binding domain NDN18_15425 PF00313 'Cold-shock' DNA-binding domain NDN18_15435 PF00361 Proton-conducting membrane transporter NDN18_15440 PF00361 Proton-conducting membrane transporter NDN18_15445 PF00361 Proton-conducting membrane transporter NDN18_15445 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN18_15450 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN18_15455 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NDN18_15460 PF12838 4Fe-4S dicluster domain NDN18_15465 PF00146 NADH dehydrogenase NDN18_15470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN18_15470 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NDN18_15470 PF00384 Molybdopterin oxidoreductase NDN18_15475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NDN18_15475 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NDN18_15475 PF10531 SLBB domain NDN18_15485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NDN18_15485 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDN18_15490 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NDN18_15495 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NDN18_15500 PF17151 Periplasmic sensor domain NDN18_15500 PF00990 Diguanylate cyclase, GGDEF domain NDN18_15510 PF00512 His Kinase A (phospho-acceptor) domain NDN18_15510 PF00672 HAMP domain NDN18_15510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_15515 PF00072 Response regulator receiver domain NDN18_15515 PF00486 Transcriptional regulatory protein, C terminal NDN18_15525 PF03477 ATP cone domain NDN18_15525 PF02867 Ribonucleotide reductase, barrel domain NDN18_15525 PF00317 Ribonucleotide reductase, all-alpha domain NDN18_15535 PF00268 Ribonucleotide reductase, small chain NDN18_15550 PF02567 Phenazine biosynthesis-like protein NDN18_15560 PF17074 Darcynin, domain of unknown function NDN18_15570 PF00440 Bacterial regulatory proteins, tetR family NDN18_15570 PF16925 Tetracyclin repressor-like, C-terminal domain NDN18_15575 PF01613 Flavin reductase like domain NDN18_15580 PF08267 Cobalamin-independent synthase, N-terminal domain NDN18_15580 PF01717 Cobalamin-independent synthase, Catalytic domain NDN18_15590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_15590 PF03466 LysR substrate binding domain NDN18_15595 PF01810 LysE type translocator NDN18_15605 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN18_15605 PF12833 Helix-turn-helix domain NDN18_15610 PF07687 Peptidase dimerisation domain NDN18_15610 PF01546 Peptidase family M20/M25/M40 NDN18_15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_15620 PF03466 LysR substrate binding domain NDN18_15625 PF07690 Major Facilitator Superfamily NDN18_15635 PF03466 LysR substrate binding domain NDN18_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_15640 PF14537 Cytochrome c3 NDN18_15640 PF00890 FAD binding domain NDN18_15650 PF02515 CoA-transferase family III NDN18_15655 PF07690 Major Facilitator Superfamily NDN18_15660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_15660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_15660 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_15665 PF03466 LysR substrate binding domain NDN18_15665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_15670 PF00107 Zinc-binding dehydrogenase NDN18_15670 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_15680 PF00962 Adenosine/AMP deaminase NDN18_15690 PF12167 Arm DNA-binding domain NDN18_15690 PF00589 Phage integrase family NDN18_15700 PF00436 Single-strand binding protein family NDN18_15825 PF08400 Prophage tail fibre N-terminal NDN18_15825 PF07484 Phage Tail Collar Domain NDN18_15825 PF03335 Phage tail fibre repeat NDN18_15915 PF07927 HicA toxin of bacterial toxin-antitoxin, NDN18_15920 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system NDN18_15950 PF02445 Quinolinate synthetase A protein NDN18_15955 PF01960 ArgJ family NDN18_15960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN18_15960 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN18_15965 PF00893 Small Multidrug Resistance protein NDN18_15980 PF00394 Multicopper oxidase NDN18_15980 PF07731 Multicopper oxidase NDN18_15980 PF07732 Multicopper oxidase NDN18_15995 PF00834 Ribulose-phosphate 3 epimerase family NDN18_16005 PF00756 Putative esterase NDN18_16015 PF04445 Putative SAM-dependent methyltransferase NDN18_16020 PF00814 Glycoprotease family NDN18_16025 PF00132 Bacterial transferase hexapeptide (six repeats) NDN18_16030 PF00293 NUDIX domain NDN18_16070 PF04715 Anthranilate synthase component I, N terminal region NDN18_16070 PF00425 chorismate binding enzyme NDN18_16075 PF00155 Aminotransferase class I and II NDN18_16080 PF00815 Histidinol dehydrogenase NDN18_16085 PF01634 ATP phosphoribosyltransferase NDN18_16090 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN18_16095 PF01722 BolA-like protein NDN18_16100 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NDN18_16105 PF00309 Sigma-54 factor, Activator interacting domain (AID) NDN18_16105 PF04963 Sigma-54 factor, core binding domain NDN18_16105 PF04552 Sigma-54, DNA binding domain NDN18_16150 PF00795 Carbon-nitrogen hydrolase NDN18_16160 PF01047 MarR family NDN18_16165 PF02566 OsmC-like protein NDN18_16170 PF00437 Type II/IV secretion system protein NDN18_16190 PF01367 5'-3' exonuclease, C-terminal SAM fold NDN18_16190 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDN18_16190 PF00476 DNA polymerase family A NDN18_16190 PF01612 3'-5' exonuclease NDN18_16195 PF02325 YGGT family NDN18_16200 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDN18_16200 PF03807 NADP oxidoreductase coenzyme F420-dependent NDN18_16205 PF09179 TilS substrate binding domain NDN18_16205 PF01171 PP-loop family NDN18_16205 PF11734 TilS substrate C-terminal domain NDN18_16210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NDN18_16215 PF02541 Ppx/GppA phosphatase family NDN18_16220 PF00085 Thioredoxin NDN18_16225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN18_16225 PF07498 Rho termination factor, N-terminal domain NDN18_16225 PF07497 Rho termination factor, RNA-binding domain NDN18_16240 PF00216 Bacterial DNA-binding protein NDN18_16245 PF03147 Ferredoxin-fold anticodon binding domain NDN18_16245 PF01588 Putative tRNA binding domain NDN18_16245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NDN18_16245 PF03483 B3/4 domain NDN18_16245 PF03484 tRNA synthetase B5 domain NDN18_16250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NDN18_16250 PF01409 tRNA synthetases class II core domain (F) NDN18_16270 PF00453 Ribosomal protein L20 NDN18_16275 PF01632 Ribosomal protein L35 NDN18_16285 PF07690 Major Facilitator Superfamily NDN18_16290 PF09335 SNARE associated Golgi protein NDN18_16295 PF00043 Glutathione S-transferase, C-terminal domain NDN18_16295 PF02798 Glutathione S-transferase, N-terminal domain NDN18_16300 PF00707 Translation initiation factor IF-3, C-terminal domain NDN18_16300 PF05198 Translation initiation factor IF-3, N-terminal domain NDN18_16305 PF03129 Anticodon binding domain NDN18_16305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN18_16305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN18_16305 PF02824 TGS domain NDN18_16310 PF13193 AMP-binding enzyme C-terminal domain NDN18_16310 PF00501 AMP-binding enzyme NDN18_16315 PF04751 Protein of unknown function (DUF615) NDN18_16320 PF00381 PTS HPr component phosphorylation site NDN18_16325 PF03668 P-loop ATPase protein family NDN18_16330 PF02569 Pantoate-beta-alanine ligase NDN18_16335 PF02548 Ketopantoate hydroxymethyltransferase NDN18_16340 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDN18_16345 PF12626 Polymerase A arginine-rich C-terminus NDN18_16345 PF01743 Poly A polymerase head domain NDN18_16345 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN18_16355 PF03819 MazG nucleotide pyrophosphohydrolase domain NDN18_16365 PF13291 ACT domain NDN18_16365 PF04607 Region found in RelA / SpoT proteins NDN18_16365 PF02824 TGS domain NDN18_16370 PF05958 tRNA (Uracil-5-)-methyltransferase NDN18_16380 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_16385 PF01627 Hpt domain NDN18_16385 PF00512 His Kinase A (phospho-acceptor) domain NDN18_16385 PF00672 HAMP domain NDN18_16385 PF00072 Response regulator receiver domain NDN18_16385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDN18_16385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_16390 PF00378 Enoyl-CoA hydratase/isomerase NDN18_16395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN18_16395 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN18_16400 PF01261 Xylose isomerase-like TIM barrel NDN18_16410 PF00106 short chain dehydrogenase NDN18_16415 PF02233 NAD(P) transhydrogenase beta subunit NDN18_16420 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NDN18_16425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NDN18_16425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NDN18_16430 PF00892 EamA-like transporter family NDN18_16440 PF07690 Major Facilitator Superfamily NDN18_16455 PF03358 NADPH-dependent FMN reductase NDN18_16460 PF01758 Sodium Bile acid symporter family NDN18_16470 PF01022 Bacterial regulatory protein, arsR family NDN18_16475 PF03960 ArsC family NDN18_16485 PF00873 AcrB/AcrD/AcrF family NDN18_16490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_16505 PF07664 Ferrous iron transport protein B C terminus NDN18_16505 PF07670 Nucleoside recognition NDN18_16505 PF02421 Ferrous iron transport protein B NDN18_16515 PF01545 Cation efflux family NDN18_16520 PF13411 MerR HTH family regulatory protein NDN18_16530 PF00394 Multicopper oxidase NDN18_16530 PF07731 Multicopper oxidase NDN18_16530 PF07732 Multicopper oxidase NDN18_16540 PF00072 Response regulator receiver domain NDN18_16540 PF00486 Transcriptional regulatory protein, C terminal NDN18_16545 PF00672 HAMP domain NDN18_16545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_16545 PF00512 His Kinase A (phospho-acceptor) domain NDN18_16550 PF04945 YHS domain NDN18_16635 PF00589 Phage integrase family NDN18_16640 PF01207 Dihydrouridine synthase (Dus) NDN18_16650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_16650 PF03466 LysR substrate binding domain NDN18_16660 PF00899 ThiF family NDN18_16670 PF00330 Aconitase family (aconitate hydratase) NDN18_16670 PF00694 Aconitase C-terminal domain NDN18_16675 PF01026 TatD related DNase NDN18_16690 PF16658 Class II release factor RF3, C-terminal domain NDN18_16690 PF00009 Elongation factor Tu GTP binding domain NDN18_16690 PF03144 Elongation factor Tu domain 2 NDN18_16715 PF13296 Putative type VI secretion system Rhs element Vgr NDN18_16715 PF04717 Type VI secretion system, phage-baseplate injector NDN18_16715 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN18_16735 PF00563 EAL domain NDN18_16735 PF00990 Diguanylate cyclase, GGDEF domain NDN18_16735 PF03707 Bacterial signalling protein N terminal repeat NDN18_16740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NDN18_16740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NDN18_16745 PF10369 Small subunit of acetolactate synthase NDN18_16750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN18_16750 PF00205 Thiamine pyrophosphate enzyme, central domain NDN18_16750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN18_16760 PF08264 Anticodon-binding domain of tRNA NDN18_16760 PF00133 tRNA synthetases class I (I, L, M and V) NDN18_16760 PF13603 Leucyl-tRNA synthetase, Domain 2 NDN18_16760 PF09334 tRNA synthetases class I (M) NDN18_16775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN18_16780 PF00005 ABC transporter NDN18_16780 PF12704 MacB-like periplasmic core domain NDN18_16780 PF02687 FtsX-like permease family NDN18_16785 PF02321 Outer membrane efflux protein NDN18_16800 PF00929 Exonuclease NDN18_16805 PF03193 RsgA GTPase NDN18_16815 PF00462 Glutaredoxin NDN18_16820 PF02556 Preprotein translocase subunit SecB NDN18_16830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NDN18_16830 PF01926 50S ribosome-binding GTPase NDN18_16835 PF13360 PQQ-like domain NDN18_16845 PF03129 Anticodon binding domain NDN18_16845 PF13393 Histidyl-tRNA synthetase NDN18_16850 PF04551 GcpE protein NDN18_16855 PF13464 Domain of unknown function (DUF4115) NDN18_16865 PF04055 Radical SAM superfamily NDN18_16870 PF00334 Nucleoside diphosphate kinase NDN18_16875 PF04384 Iron-sulphur cluster assembly NDN18_16880 PF01569 PAP2 superfamily NDN18_16885 PF13439 Glycosyltransferase Family 4 NDN18_16885 PF00534 Glycosyl transferases group 1 NDN18_16890 PF11818 C-terminal domain of tail specific protease (DUF3340) NDN18_16890 PF00595 PDZ domain NDN18_16890 PF03572 Peptidase family S41 NDN18_16890 PF17804 Tail specific protease N-terminal domain NDN18_16895 PF00933 Glycosyl hydrolase family 3 N terminal domain NDN18_16905 PF00561 alpha/beta hydrolase fold NDN18_16910 PF00171 Aldehyde dehydrogenase family NDN18_16915 PF00171 Aldehyde dehydrogenase family NDN18_16920 PF01202 Shikimate kinase NDN18_16925 PF02447 GntP family permease NDN18_16930 PF01081 KDPG and KHG aldolase NDN18_16935 PF00920 Dehydratase family NDN18_16940 PF00871 Acetokinase family NDN18_16945 PF07085 DRTGG domain NDN18_16945 PF01515 Phosphate acetyl/butaryl transferase NDN18_16950 PF05681 Fumarate hydratase (Fumerase) NDN18_16950 PF05683 Fumarase C-terminus NDN18_16965 PF06689 ClpX C4-type zinc finger NDN18_16965 PF10431 C-terminal, D2-small domain, of ClpB protein NDN18_16965 PF07724 AAA domain (Cdc48 subfamily) NDN18_16970 PF00574 Clp protease NDN18_16975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN18_16975 PF05698 Bacterial trigger factor protein (TF) C-terminus NDN18_16975 PF05697 Bacterial trigger factor protein (TF) NDN18_16980 PF07715 TonB-dependent Receptor Plug Domain NDN18_16980 PF00593 TonB dependent receptor NDN18_16985 PF13640 2OG-Fe(II) oxygenase superfamily NDN18_16985 PF18331 PKHD-type hydroxylase C-terminal domain NDN18_16990 PF08502 LeuA allosteric (dimerisation) domain NDN18_16990 PF00682 HMGL-like NDN18_16995 PF00561 alpha/beta hydrolase fold NDN18_17000 PF00561 alpha/beta hydrolase fold NDN18_17000 PF07021 Methionine biosynthesis protein MetW NDN18_17015 PF01725 Ham1 family NDN18_17025 PF02416 mttA/Hcf106 family NDN18_17030 PF02416 mttA/Hcf106 family NDN18_17035 PF00902 Sec-independent protein translocase protein (TatC) NDN18_17055 PF01790 Prolipoprotein diacylglyceryl transferase NDN18_17070 PF00303 Thymidylate synthase NDN18_17075 PF00186 Dihydrofolate reductase NDN18_17085 PF01625 Peptide methionine sulfoxide reductase NDN18_17095 PF01618 MotA/TolQ/ExbB proton channel family NDN18_17105 PF00551 Formyl transferase NDN18_17105 PF01842 ACT domain NDN18_17115 PF00171 Aldehyde dehydrogenase family NDN18_17120 PF00830 Ribosomal L28 family NDN18_17125 PF00471 Ribosomal protein L33 NDN18_17130 PF02254 TrkA-N domain NDN18_17130 PF00999 Sodium/hydrogen exchanger family NDN18_17150 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NDN18_17155 PF00580 UvrD/REP helicase N-terminal domain NDN18_17155 PF13361 UvrD-like helicase C-terminal domain NDN18_17170 PF01131 DNA topoisomerase NDN18_17170 PF01396 Topoisomerase DNA binding C4 zinc finger NDN18_17170 PF01751 Toprim domain NDN18_17170 PF08272 Topoisomerase I zinc-ribbon-like NDN18_17180 PF01638 HxlR-like helix-turn-helix NDN18_17185 PF00107 Zinc-binding dehydrogenase NDN18_17185 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_17190 PF04102 SlyX NDN18_17195 PF00005 ABC transporter NDN18_17195 PF12848 ABC transporter NDN18_17195 PF16326 ABC transporter C-terminal domain NDN18_17205 PF01810 LysE type translocator NDN18_17210 PF03279 Bacterial lipid A biosynthesis acyltransferase NDN18_17220 PF00375 Sodium:dicarboxylate symporter family NDN18_17230 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN18_17230 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN18_17250 PF01416 tRNA pseudouridine synthase NDN18_17260 PF01176 Translation initiation factor 1A / IF-1 NDN18_17275 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN18_17285 PF00694 Aconitase C-terminal domain NDN18_17290 PF00330 Aconitase family (aconitate hydratase) NDN18_17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_17300 PF03466 LysR substrate binding domain NDN18_17310 PF00293 NUDIX domain NDN18_17315 PF05524 PEP-utilising enzyme, N-terminal NDN18_17315 PF01590 GAF domain NDN18_17315 PF02896 PEP-utilising enzyme, TIM barrel domain NDN18_17315 PF00391 PEP-utilising enzyme, mobile domain NDN18_17320 PF00141 Peroxidase NDN18_17325 PF12706 Beta-lactamase superfamily domain NDN18_17330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_17330 PF03466 LysR substrate binding domain NDN18_17340 PF02798 Glutathione S-transferase, N-terminal domain NDN18_17345 PF08279 HTH domain NDN18_17345 PF13280 WYL domain NDN18_17350 PF13419 Haloacid dehalogenase-like hydrolase NDN18_17355 PF01479 S4 domain NDN18_17355 PF00849 RNA pseudouridylate synthase NDN18_17360 PF12111 Polyribonucleotide phosphorylase C terminal NDN18_17360 PF00575 S1 RNA binding domain NDN18_17360 PF10150 Ribonuclease E/G family NDN18_17365 PF13193 AMP-binding enzyme C-terminal domain NDN18_17365 PF00501 AMP-binding enzyme NDN18_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_17380 PF03466 LysR substrate binding domain NDN18_17385 PF00106 short chain dehydrogenase NDN18_17390 PF04055 Radical SAM superfamily NDN18_17390 PF06969 HemN C-terminal domain NDN18_17400 PF01554 MatE NDN18_17405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_17405 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_17405 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN18_17410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_17410 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN18_17415 PF03109 ABC1 family NDN18_17420 PF01197 Ribosomal protein L31 NDN18_17435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NDN18_17445 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_17445 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN18_17445 PF13247 4Fe-4S dicluster domain NDN18_17455 PF03884 DNA gyrase inhibitor YacG NDN18_17460 PF00753 Metallo-beta-lactamase superfamily NDN18_17465 PF00762 Ferrochelatase NDN18_17475 PF01177 Asp/Glu/Hydantoin racemase NDN18_17495 PF01206 Sulfurtransferase TusA NDN18_17500 PF00571 CBS domain NDN18_17500 PF03471 Transporter associated domain NDN18_17505 PF00795 Carbon-nitrogen hydrolase NDN18_17510 PF01588 Putative tRNA binding domain NDN18_17520 PF07963 Prokaryotic N-terminal methylation motif NDN18_17520 PF08334 Type II secretion system (T2SS), protein G NDN18_17525 PF00482 Type II secretion system (T2SS), protein F NDN18_17530 PF00271 Helicase conserved C-terminal domain NDN18_17530 PF17764 3′ DNA-binding domain (3′BD) NDN18_17530 PF18074 Primosomal protein N C-terminal domain NDN18_17530 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NDN18_17530 PF00270 DEAD/DEAH box helicase NDN18_17535 PF00999 Sodium/hydrogen exchanger family NDN18_17535 PF02254 TrkA-N domain NDN18_17540 PF01430 Hsp33 protein NDN18_17550 PF01556 DnaJ C terminal domain NDN18_17550 PF00226 DnaJ domain NDN18_17560 PF01544 CorA-like Mg2+ transporter protein NDN18_17565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NDN18_17565 PF00013 KH domain NDN18_17565 PF00575 S1 RNA binding domain NDN18_17565 PF01138 3' exoribonuclease family, domain 1 NDN18_17565 PF03725 3' exoribonuclease family, domain 2 NDN18_17570 PF00312 Ribosomal protein S15 NDN18_17575 PF00144 Beta-lactamase NDN18_17580 PF13538 UvrD-like helicase C-terminal domain NDN18_17585 PF12705 PD-(D/E)XK nuclease superfamily NDN18_17585 PF00580 UvrD/REP helicase N-terminal domain NDN18_17585 PF13361 UvrD-like helicase C-terminal domain NDN18_17590 PF17946 RecC C-terminal domain NDN18_17600 PF03976 Polyphosphate kinase 2 (PPK2) NDN18_17610 PF01209 ubiE/COQ5 methyltransferase family NDN18_17620 PF03109 ABC1 family NDN18_17625 PF01494 FAD binding domain NDN18_17630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN18_17640 PF01502 Phosphoribosyl-AMP cyclohydrolase NDN18_17655 PF13244 Domain of unknown function (DUF4040) NDN18_17655 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NDN18_17655 PF00361 Proton-conducting membrane transporter NDN18_17655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN18_17660 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN18_17665 PF00361 Proton-conducting membrane transporter NDN18_17670 PF01899 Na+/H+ ion antiporter subunit NDN18_17675 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NDN18_17680 PF03334 Na+/H+ antiporter subunit NDN18_17685 PF02033 Ribosome-binding factor A NDN18_17690 PF08364 Bacterial translation initiation factor IF-2 associated region NDN18_17690 PF04760 Translation initiation factor IF-2, N-terminal region NDN18_17690 PF00009 Elongation factor Tu GTP binding domain NDN18_17690 PF11987 Translation-initiation factor 2 NDN18_17695 PF13184 NusA-like KH domain NDN18_17695 PF08529 NusA N-terminal domain NDN18_17695 PF00575 S1 RNA binding domain NDN18_17700 PF02576 RimP N-terminal domain NDN18_17700 PF17384 RimP C-terminal SH3 domain NDN18_17720 PF03840 Preprotein translocase SecG subunit NDN18_17725 PF00121 Triosephosphate isomerase NDN18_17730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN18_17730 PF00437 Type II/IV secretion system protein NDN18_17735 PF00482 Type II secretion system (T2SS), protein F NDN18_17745 PF06750 Bacterial Peptidase A24 N-terminal domain NDN18_17745 PF01478 Type IV leader peptidase family NDN18_17750 PF01121 Dephospho-CoA kinase NDN18_17760 PF00588 SpoU rRNA Methylase family NDN18_17760 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN18_17765 PF06865 Pyrimidine/purine nucleoside phosphorylase NDN18_17775 PF02463 RecF/RecN/SMC N terminal domain NDN18_17780 PF02622 Uncharacterized ACR, COG1678 NDN18_17785 PF03652 Holliday junction resolvase NDN18_17790 PF13533 Biotin-lipoyl like NDN18_17815 PF02805 Metal binding domain of Ada NDN18_17815 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN18_17815 PF12833 Helix-turn-helix domain NDN18_17815 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN18_17820 PF01066 CDP-alcohol phosphatidyltransferase NDN18_17830 PF01541 GIY-YIG catalytic domain NDN18_17830 PF02151 UvrB/uvrC motif NDN18_17830 PF08459 UvrC Helix-hairpin-helix N-terminal NDN18_17855 PF00378 Enoyl-CoA hydratase/isomerase NDN18_17855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN18_17855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN18_17860 PF00108 Thiolase, N-terminal domain NDN18_17860 PF02803 Thiolase, C-terminal domain NDN18_17885 PF00376 MerR family regulatory protein NDN18_17885 PF09278 MerR, DNA binding NDN18_17895 PF01323 DSBA-like thioredoxin domain NDN18_17910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_17910 PF00183 Hsp90 protein NDN18_17925 PF13726 Na+-H+ antiporter family NDN18_17925 PF03553 Na+/H+ antiporter family NDN18_17950 PF05000 RNA polymerase Rpb1, domain 4 NDN18_17950 PF04997 RNA polymerase Rpb1, domain 1 NDN18_17950 PF00623 RNA polymerase Rpb1, domain 2 NDN18_17950 PF04983 RNA polymerase Rpb1, domain 3 NDN18_17950 PF04998 RNA polymerase Rpb1, domain 5 NDN18_17955 PF04561 RNA polymerase Rpb2, domain 2 NDN18_17955 PF04565 RNA polymerase Rpb2, domain 3 NDN18_17955 PF10385 RNA polymerase beta subunit external 1 domain NDN18_17955 PF00562 RNA polymerase Rpb2, domain 6 NDN18_17955 PF04563 RNA polymerase beta subunit NDN18_17955 PF04560 RNA polymerase Rpb2, domain 7 NDN18_17960 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN18_17960 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN18_17965 PF00466 Ribosomal protein L10 NDN18_17970 PF00687 Ribosomal protein L1p/L10e family NDN18_17975 PF00298 Ribosomal protein L11, RNA binding domain NDN18_17975 PF03946 Ribosomal protein L11, N-terminal domain NDN18_17980 PF00467 KOW motif NDN18_17980 PF02357 Transcription termination factor nusG NDN18_17985 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NDN18_17995 PF00009 Elongation factor Tu GTP binding domain NDN18_17995 PF03143 Elongation factor Tu C-terminal domain NDN18_17995 PF03144 Elongation factor Tu domain 2 NDN18_18020 PF04715 Anthranilate synthase component I, N terminal region NDN18_18020 PF00425 chorismate binding enzyme NDN18_18025 PF13419 Haloacid dehalogenase-like hydrolase NDN18_18030 PF12401 Protein of unknown function (DUF2662) NDN18_18030 PF00498 FHA domain NDN18_18035 PF00263 Bacterial type II and III secretion system protein NDN18_18035 PF03958 Bacterial type II/III secretion system short domain NDN18_18050 PF00816 H-NS histone family NDN18_18075 PF03900 Porphobilinogen deaminase, C-terminal domain NDN18_18075 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NDN18_18080 PF00072 Response regulator receiver domain NDN18_18080 PF04397 LytTr DNA-binding domain NDN18_18085 PF07694 5TMR of 5TMR-LYT NDN18_18085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_18085 PF06580 Histidine kinase NDN18_18090 PF14698 Argininosuccinate lyase C-terminal NDN18_18090 PF00206 Lyase NDN18_18095 PF04362 Bacterial Fe(2+) trafficking NDN18_18100 PF01895 PhoU domain NDN18_18105 PF02321 Outer membrane efflux protein NDN18_18110 PF00892 EamA-like transporter family NDN18_18125 PF13667 ThiC-associated domain NDN18_18125 PF01964 Radical SAM ThiC family NDN18_18130 PF00293 NUDIX domain NDN18_18135 PF00149 Calcineurin-like phosphoesterase NDN18_18140 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDN18_18145 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN18_18150 PF01098 Cell cycle protein NDN18_18155 PF08245 Mur ligase middle domain NDN18_18155 PF02875 Mur ligase family, glutamate ligase domain NDN18_18165 PF02421 Ferrous iron transport protein B NDN18_18165 PF07664 Ferrous iron transport protein B C terminus NDN18_18165 PF07670 Nucleoside recognition NDN18_18175 PF02899 Phage integrase, N-terminal SAM-like domain NDN18_18175 PF00589 Phage integrase family NDN18_18180 PF13098 Thioredoxin-like domain NDN18_18180 PF10411 Disulfide bond isomerase protein N-terminus NDN18_18185 PF01842 ACT domain NDN18_18185 PF03447 Homoserine dehydrogenase, NAD binding domain NDN18_18185 PF00742 Homoserine dehydrogenase NDN18_18190 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_18195 PF00768 D-alanyl-D-alanine carboxypeptidase NDN18_18200 PF00196 Bacterial regulatory proteins, luxR family NDN18_18200 PF00072 Response regulator receiver domain NDN18_18205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_18205 PF00512 His Kinase A (phospho-acceptor) domain NDN18_18210 PF00072 Response regulator receiver domain NDN18_18210 PF00158 Sigma-54 interaction domain NDN18_18210 PF02954 Bacterial regulatory protein, Fis family NDN18_18215 PF03572 Peptidase family S41 NDN18_18215 PF00595 PDZ domain NDN18_18220 PF01676 Metalloenzyme superfamily NDN18_18220 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NDN18_18225 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN18_18235 PF02789 Cytosol aminopeptidase family, N-terminal domain NDN18_18235 PF00883 Cytosol aminopeptidase family, catalytic domain NDN18_18255 PF00677 Lumazine binding domain NDN18_18265 PF01872 RibD C-terminal domain NDN18_18265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN18_18270 PF03477 ATP cone domain NDN18_18275 PF00909 Ammonium Transporter Family NDN18_18280 PF00543 Nitrogen regulatory protein P-II NDN18_18290 PF01078 Magnesium chelatase, subunit ChlI NDN18_18290 PF13335 Magnesium chelatase, subunit ChlI C-terminal NDN18_18305 PF00701 Dihydrodipicolinate synthetase family NDN18_18320 PF03573 outer membrane porin, OprD family NDN18_18325 PF00719 Inorganic pyrophosphatase NDN18_18340 PF00501 AMP-binding enzyme NDN18_18340 PF13193 AMP-binding enzyme C-terminal domain NDN18_18345 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN18_18345 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN18_18350 PF07690 Major Facilitator Superfamily NDN18_18355 PF03458 UPF0126 domain NDN18_18360 PF02810 SEC-C motif NDN18_18365 PF03471 Transporter associated domain NDN18_18365 PF03741 Integral membrane protein TerC family NDN18_18370 PF03641 Possible lysine decarboxylase NDN18_18375 PF07690 Major Facilitator Superfamily NDN18_18385 PF00817 impB/mucB/samB family NDN18_18385 PF11799 impB/mucB/samB family C-terminal domain NDN18_18385 PF11798 IMS family HHH motif NDN18_18395 PF00072 Response regulator receiver domain NDN18_18395 PF00486 Transcriptional regulatory protein, C terminal NDN18_18400 PF00672 HAMP domain NDN18_18400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN18_18400 PF00512 His Kinase A (phospho-acceptor) domain NDN18_18405 PF06123 Inner membrane protein CreD NDN18_18425 PF08497 Radical SAM N-terminal NDN18_18425 PF04055 Radical SAM superfamily NDN18_18425 PF11842 Domain of unknown function (DUF3362) NDN18_18445 PF03358 NADPH-dependent FMN reductase NDN18_18455 PF00291 Pyridoxal-phosphate dependent enzyme NDN18_18515 PF01327 Polypeptide deformylase NDN18_18525 PF02481 DNA recombination-mediator protein A NDN18_18525 PF17782 DprA winged helix domain NDN18_18530 PF01300 Telomere recombination NDN18_18535 PF00892 EamA-like transporter family NDN18_18540 PF00440 Bacterial regulatory proteins, tetR family NDN18_18545 PF07690 Major Facilitator Superfamily NDN18_18555 PF00255 Glutathione peroxidase NDN18_18565 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDN18_18570 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN18_18570 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN18_18575 PF00231 ATP synthase NDN18_18580 PF00306 ATP synthase alpha/beta chain, C terminal domain NDN18_18580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN18_18580 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN18_18585 PF00213 ATP synthase delta (OSCP) subunit NDN18_18590 PF00430 ATP synthase B/B' CF(0) NDN18_18595 PF00137 ATP synthase subunit C NDN18_18600 PF00119 ATP synthase A chain NDN18_18620 PF00005 ABC transporter NDN18_18625 PF00950 ABC 3 transport family NDN18_18630 PF01810 LysE type translocator NDN18_18635 PF04261 Dyp-type peroxidase family NDN18_18640 PF00390 Malic enzyme, N-terminal domain NDN18_18640 PF03949 Malic enzyme, NAD binding domain NDN18_18645 PF05746 DALR anticodon binding domain NDN18_18645 PF03485 Arginyl tRNA synthetase N terminal domain NDN18_18645 PF00750 tRNA synthetases class I (R) NDN18_18665 PF05726 Pirin C-terminal cupin domain NDN18_18665 PF02678 Pirin NDN18_18675 PF03551 Transcriptional regulator PadR-like family NDN18_18680 PF13427 Domain of unknown function (DUF4111) NDN18_18680 PF01909 Nucleotidyltransferase domain NDN18_18685 PF00117 Glutamine amidotransferase class-I NDN18_18685 PF00958 GMP synthase C terminal domain NDN18_18685 PF02540 NAD synthase NDN18_18690 PF04286 Protein of unknown function (DUF445) NDN18_18695 PF07681 DoxX NDN18_18700 PF09335 SNARE associated Golgi protein NDN18_18715 PF13614 AAA domain NDN18_18725 PF01722 BolA-like protein NDN18_18740 PF01648 4'-phosphopantetheinyl transferase superfamily NDN18_18745 PF16363 GDP-mannose 4,6 dehydratase NDN18_18765 PF16197 Ketoacyl-synthetase C-terminal extension NDN18_18765 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN18_18765 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN18_18765 PF08242 Methyltransferase domain NDN18_18765 PF00550 Phosphopantetheine attachment site NDN18_18765 PF14765 Polyketide synthase dehydratase NDN18_18765 PF00975 Thioesterase domain NDN18_18770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_18770 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_18770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_18775 PF00501 AMP-binding enzyme NDN18_18780 PF03472 Autoinducer binding domain NDN18_18780 PF00196 Bacterial regulatory proteins, luxR family NDN18_18790 PF00765 Autoinducer synthase NDN18_18795 PF07690 Major Facilitator Superfamily NDN18_18795 PF00083 Sugar (and other) transporter NDN18_18800 PF00378 Enoyl-CoA hydratase/isomerase NDN18_18805 PF00378 Enoyl-CoA hydratase/isomerase NDN18_18810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN18_18810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN18_18810 PF02770 Acyl-CoA dehydrogenase, middle domain NDN18_18815 PF13193 AMP-binding enzyme C-terminal domain NDN18_18815 PF00501 AMP-binding enzyme NDN18_18820 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN18_18820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN18_18825 PF00171 Aldehyde dehydrogenase family NDN18_18835 PF00324 Amino acid permease NDN18_18840 PF00324 Amino acid permease NDN18_18845 PF01042 Endoribonuclease L-PSP NDN18_18850 PF00842 Alanine racemase, C-terminal domain NDN18_18850 PF01168 Alanine racemase, N-terminal domain NDN18_18855 PF01266 FAD dependent oxidoreductase NDN18_18860 PF01037 Lrp/AsnC ligand binding domain NDN18_18870 PF07715 TonB-dependent Receptor Plug Domain NDN18_18870 PF00593 TonB dependent receptor NDN18_18885 PF00849 RNA pseudouridylate synthase NDN18_18930 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN18_18930 PF04717 Type VI secretion system, phage-baseplate injector NDN18_18930 PF13296 Putative type VI secretion system Rhs element Vgr NDN18_18940 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN18_18940 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN18_18980 PF00330 Aconitase family (aconitate hydratase) NDN18_18980 PF00694 Aconitase C-terminal domain NDN18_18985 PF00285 Citrate synthase, C-terminal domain NDN18_18995 PF07729 FCD domain NDN18_18995 PF00392 Bacterial regulatory proteins, gntR family NDN18_19005 PF00155 Aminotransferase class I and II NDN18_19010 PF01565 FAD binding domain NDN18_19010 PF09330 D-lactate dehydrogenase, membrane binding NDN18_19015 PF01070 FMN-dependent dehydrogenase NDN18_19020 PF07729 FCD domain NDN18_19020 PF00392 Bacterial regulatory proteins, gntR family NDN18_19025 PF02652 L-lactate permease NDN18_19030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN18_19030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN18_19030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN18_19030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN18_19040 PF16363 GDP-mannose 4,6 dehydratase NDN18_19045 PF00342 Phosphoglucose isomerase NDN18_19050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN18_19050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN18_19050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN18_19055 PF00483 Nucleotidyl transferase NDN18_19060 PF02397 Bacterial sugar transferase NDN18_19065 PF00535 Glycosyl transferase family 2 NDN18_19070 PF00534 Glycosyl transferases group 1 NDN18_19075 PF00535 Glycosyl transferase family 2 NDN18_19085 PF00535 Glycosyl transferase family 2 NDN18_19085 PF01501 Glycosyl transferase family 8 NDN18_19095 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN18_19095 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN18_19095 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN18_19100 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NDN18_19100 PF10531 SLBB domain NDN18_19100 PF02563 Polysaccharide biosynthesis/export protein NDN18_19105 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN18_19110 PF02706 Chain length determinant protein NDN18_19110 PF13614 AAA domain NDN18_19110 PF13807 G-rich domain on putative tyrosine kinase NDN18_19115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN18_19115 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN18_19120 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN18_19120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN18_19125 PF03023 Lipid II flippase MurJ NDN18_19130 PF01510 N-acetylmuramoyl-L-alanine amidase NDN18_19135 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NDN18_19135 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NDN18_19145 PF04185 Phosphoesterase family NDN18_19145 PF05506 Domain of unknown function (DUF756) NDN18_19150 PF01138 3' exoribonuclease family, domain 1 NDN18_19150 PF03725 3' exoribonuclease family, domain 2 NDN18_19155 PF00487 Fatty acid desaturase NDN18_19160 PF00175 Oxidoreductase NAD-binding domain NDN18_19165 PF00440 Bacterial regulatory proteins, tetR family NDN18_19170 PF08360 QacR-like protein, C-terminal region NDN18_19170 PF00440 Bacterial regulatory proteins, tetR family NDN18_19175 PF01323 DSBA-like thioredoxin domain NDN18_19185 PF13419 Haloacid dehalogenase-like hydrolase NDN18_19190 PF00106 short chain dehydrogenase NDN18_19205 PF00696 Amino acid kinase family NDN18_19205 PF00583 Acetyltransferase (GNAT) family NDN18_19210 PF09084 NMT1/THI5 like NDN18_19215 PF09084 NMT1/THI5 like NDN18_19220 PF00296 Luciferase-like monooxygenase NDN18_19225 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_19230 PF00005 ABC transporter NDN18_19235 PF00440 Bacterial regulatory proteins, tetR family NDN18_19235 PF08362 YcdC-like protein, C-terminal region NDN18_19240 PF01048 Phosphorylase superfamily NDN18_19250 PF01687 Riboflavin kinase NDN18_19250 PF06574 FAD synthetase NDN18_19255 PF00133 tRNA synthetases class I (I, L, M and V) NDN18_19255 PF08264 Anticodon-binding domain of tRNA NDN18_19255 PF06827 Zinc finger found in FPG and IleRS NDN18_19260 PF01252 Signal peptidase (SPase) II NDN18_19265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN18_19305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN18_19310 PF07859 alpha/beta hydrolase fold NDN18_19330 PF03466 LysR substrate binding domain NDN18_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_19335 PF01025 GrpE NDN18_19340 PF00012 Hsp70 protein NDN18_19360 PF13406 Transglycosylase SLT domain NDN18_19365 PF02222 ATP-grasp domain NDN18_19365 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NDN18_19370 PF00731 AIR carboxylase NDN18_19380 PF01225 Mur ligase family, catalytic domain NDN18_19380 PF02875 Mur ligase family, glutamate ligase domain NDN18_19380 PF08245 Mur ligase middle domain NDN18_19390 PF01569 PAP2 superfamily NDN18_19395 PF03741 Integral membrane protein TerC family NDN18_19405 PF03738 Glutathionylspermidine synthase preATP-grasp NDN18_19410 PF00355 Rieske [2Fe-2S] domain NDN18_19415 PF01979 Amidohydrolase family NDN18_19420 PF00156 Phosphoribosyl transferase domain NDN18_19430 PF13098 Thioredoxin-like domain NDN18_19430 PF10411 Disulfide bond isomerase protein N-terminus NDN18_19435 PF16916 Dimerisation domain of Zinc Transporter NDN18_19435 PF01545 Cation efflux family NDN18_19440 PF02583 Metal-sensitive transcriptional repressor NDN18_19445 PF12631 MnmE helical domain NDN18_19445 PF01926 50S ribosome-binding GTPase NDN18_19445 PF10396 GTP-binding protein TrmE N-terminus NDN18_19450 PF02096 60Kd inner membrane protein NDN18_19450 PF14849 YidC periplasmic domain NDN18_19455 PF01809 Putative membrane protein insertion efficiency factor NDN18_19460 PF00825 Ribonuclease P NDN18_19465 PF00468 Ribosomal protein L34 NDN18_19470 PF13614 AAA domain NDN18_19475 PF02195 ParB-like nuclease domain NDN18_19475 PF17762 HTH domain found in ParB protein NDN18_19490 PF00817 impB/mucB/samB family NDN18_19490 PF11799 impB/mucB/samB family C-terminal domain NDN18_19490 PF11798 IMS family HHH motif NDN18_19490 PF13438 Domain of unknown function (DUF4113) NDN18_19495 PF00717 Peptidase S24-like NDN18_19520 PF04225 Opacity-associated protein A LysM-like domain NDN18_19520 PF01551 Peptidase family M23 NDN18_19645 PF13737 Transposase DDE domain NDN18_19705 PF01435 Peptidase family M48 NDN18_19735 PF00665 Integrase core domain NDN18_19755 PF00582 Universal stress protein family NDN18_19760 PF01740 STAS domain NDN18_19760 PF00916 Sulfate permease family NDN18_19790 PF02899 Phage integrase, N-terminal SAM-like domain NDN18_19790 PF00589 Phage integrase family NDN18_19815 PF00665 Integrase core domain NDN18_19830 PF00809 Pterin binding enzyme NDN18_19840 PF07690 Major Facilitator Superfamily NDN18_19845 PF02909 Tetracyclin repressor-like, C-terminal domain NDN18_19845 PF00440 Bacterial regulatory proteins, tetR family NDN18_19865 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase NDN18_19870 PF01636 Phosphotransferase enzyme family NDN18_19890 PF01396 Topoisomerase DNA binding C4 zinc finger NDN18_19890 PF01751 Toprim domain NDN18_19890 PF01131 DNA topoisomerase NDN18_19955 PF13610 DDE domain NDN18_19960 PF08240 Alcohol dehydrogenase GroES-like domain NDN18_19960 PF00107 Zinc-binding dehydrogenase NDN18_19965 PF02583 Metal-sensitive transcriptional repressor NDN18_19970 PF13737 Transposase DDE domain NDN18_19975 PF00860 Permease family NDN18_19980 PF00576 HIUase/Transthyretin family NDN18_20005 PF00563 EAL domain NDN18_20005 PF11809 Domain of unknown function (DUF3330) NDN18_20015 PF00403 Heavy-metal-associated domain NDN18_20015 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_20015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN18_20020 PF03203 MerC mercury resistance protein NDN18_20025 PF00403 Heavy-metal-associated domain NDN18_20030 PF02411 MerT mercuric transport protein NDN18_20035 PF00376 MerR family regulatory protein NDN18_20035 PF09278 MerR, DNA binding NDN18_20040 PF13610 DDE domain NDN18_20045 PF00239 Resolvase, N terminal domain NDN18_20045 PF02796 Helix-turn-helix domain of resolvase NDN18_20055 PF13086 AAA domain NDN18_20055 PF13087 AAA domain NDN18_20055 PF13195 Protein of unknown function (DUF4011) NDN18_20065 PF01740 STAS domain NDN18_20065 PF00916 Sulfate permease family NDN18_20070 PF13610 DDE domain NDN18_20115 PF13173 AAA domain NDN18_20115 PF13635 Domain of unknown function (DUF4143) NDN18_20125 PF13737 Transposase DDE domain NDN18_20165 PF03466 LysR substrate binding domain NDN18_20165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN18_20170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN18_20170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN18_20175 PF00528 Binding-protein-dependent transport system inner membrane component NDN18_20185 PF00005 ABC transporter NDN18_20195 PF13737 Transposase DDE domain NDN18_20210 PF02661 Fic/DOC family NDN18_20235 PF02796 Helix-turn-helix domain of resolvase NDN18_20235 PF00239 Resolvase, N terminal domain NDN18_20240 PF01526 Tn3 transposase DDE domain NDN18_20240 PF13700 Domain of unknown function (DUF4158) NDN18_20265 PF17932 Tetracyclin repressor-like, C-terminal domain NDN18_20265 PF00440 Bacterial regulatory proteins, tetR family NDN18_20280 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN18_20280 PF14759 Reductase C-terminal NDN18_20285 PF00067 Cytochrome P450 NDN18_20290 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN18_20295 PF02311 AraC-like ligand binding domain NDN18_20295 PF12833 Helix-turn-helix domain NDN18_20300 PF02796 Helix-turn-helix domain of resolvase NDN18_20300 PF00239 Resolvase, N terminal domain NDN18_20310 PF13610 DDE domain NDN18_20335 PF02522 Aminoglycoside 3-N-acetyltransferase NDN18_20340 PF13610 DDE domain NDN18_20350 PF01636 Phosphotransferase enzyme family NDN18_20405 PF00437 Type II/IV secretion system protein NDN18_20405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain