locus-tag	class	description
ABD1_00020	COG0592	DNA-directed DNA polymerase activity
ABD1_00040	COG0187	DNA topoisomerase II activity
ABD1_00060	COG0586	Pfam SNARE associated Golgi protein
ABD1_00070	COG0488	(ABC) transporter
ABD1_00120	COG0596	Alpha beta hydrolase
ABD1_00130	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ABD1_00140	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ABD1_00170	COG1047	Peptidyl-prolyl cis-trans
ABD1_00190	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ABD1_00200	COG0196	riboflavin kinase activity
ABD1_00220	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ABD1_00230	COG1309	transcriptional regulator
ABD1_00240	COG1116	anion transmembrane transporter activity
ABD1_00250	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABD1_00260	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABD1_00270	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABD1_00280	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABD1_00320	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_00330	COG0546	phosphoglycolate phosphatase activity
ABD1_00450	COG3023	N-Acetylmuramoyl-L-alanine amidase
ABD1_00460	COG0728	peptidoglycan biosynthetic process
ABD1_00510	COG1596	polysaccharide export
ABD1_00520	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ABD1_00630	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ABD1_00640	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ABD1_00650	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ABD1_00680	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABD1_00690	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABD1_00710	COG2186	Transcriptional regulator
ABD1_00730	COG0277	FAD linked oxidase domain protein
ABD1_00740	COG1448	Aminotransferase
ABD1_00750	COG1802	Transcriptional regulator
ABD1_00780	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ABD1_00910	COG0564	pseudouridine synthase activity
ABD1_00960	COG1522	sequence-specific DNA binding
ABD1_00990	COG0251	oxidation-reduction process
ABD1_01000	COG1113	amino acid transport
ABD1_01010	COG1113	amino acid transport
ABD1_01050	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABD1_01060	COG1960	acyl-CoA dehydrogenase activity
ABD1_01070	COG1024	Enoyl-CoA hydratase
ABD1_01080	COG1024	Enoyl-CoA hydratase
ABD1_01090	COG0477	Major facilitator Superfamily
ABD1_01100	COG0019	diaminopimelate decarboxylase activity
ABD1_01110	COG0318	PFAM AMP-dependent synthetase and ligase
ABD1_01130	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABD1_01140	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ABD1_01150	COG3916	Acyl-homoserine-lactone synthase
ABD1_01170	COG2197	response regulator
ABD1_01190	COG1960	acyl-CoA dehydrogenase activity
ABD1_01200	COG3321	synthase
ABD1_01200	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ABD1_01200	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABD1_01200	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
ABD1_01260	COG0271	Belongs to the BolA IbaG family
ABD1_01280	COG1192	Involved in chromosome partitioning
ABD1_01310	COG0586	Pfam SNARE associated Golgi protein
ABD1_01320	COG2259	Doxx family
ABD1_01330	COG4399	Belongs to the UPF0754 family
ABD1_01340	COG0519	Catalyzes the synthesis of GMP from XMP
ABD1_01340	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABD1_01430	COG0281	malic enzyme
ABD1_01440	COG2837	iron assimilation
ABD1_01450	COG1280	lysine exporter protein (LysE YggA)
ABD1_01460	COG1108	ABC-type Mn2 Zn2 transport systems permease components
ABD1_01470	COG1121	(ABC) transporter
ABD1_01600	COG0386	Belongs to the glutathione peroxidase family
ABD1_01630	COG1309	transcriptional regulator
ABD1_01640	COG0697	spore germination
ABD1_01660	COG0758	DNA mediated transformation
ABD1_01730	COG1309	transcriptional regulator
ABD1_01750	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ABD1_01770	COG0655	NAD(P)H dehydrogenase (quinone) activity
ABD1_01840	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ABD1_01860	COG2814	Major facilitator Superfamily
ABD1_01880	COG1253	flavin adenine dinucleotide binding
ABD1_01890	COG3012	SEC-C Motif Domain Protein
ABD1_01900	COG2860	membrane
ABD1_01910	COG0477	Major facilitator Superfamily
ABD1_01930	COG0318	PFAM AMP-dependent synthetase and ligase
ABD1_01960	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ABD1_01990	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABD1_02010	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABD1_02020	COG0606	chelatase, subunit chli
ABD1_02040	COG0347	Belongs to the P(II) protein family
ABD1_02050	COG0004	ammonium transporteR
ABD1_02070	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABD1_02070	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ABD1_02150	COG0795	lipopolysaccharide-transporting ATPase activity
ABD1_02160	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
ABD1_02170	COG0793	Belongs to the peptidase S41A family
ABD1_02200	COG2197	response regulator
ABD1_02220	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ABD1_02240	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABD1_02250	COG4974	Belongs to the 'phage' integrase family
ABD1_02300	COG0772	Belongs to the SEDS family
ABD1_02310	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ABD1_02320	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
ABD1_02330	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ABD1_02380	COG0697	spore germination
ABD1_02390	COG1538	Outer membrane efflux protein
ABD1_02430	COG3275	phosphorelay sensor kinase activity
ABD1_02450	COG0181	hydroxymethylbilane synthase activity
ABD1_02540	COG1716	ATPase activity
ABD1_02550	COG0546	phosphoglycolate phosphatase activity
ABD1_02700	COG2056	Na+-H+ antiporter family
ABD1_02730	COG0326	Molecular chaperone. Has ATPase activity
ABD1_02760	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
ABD1_02890	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
ABD1_02900	COG2169	Transcriptional regulator
ABD1_02900	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABD1_02950	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ABD1_02970	COG0497	DNA recombination
ABD1_03000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABD1_03020	COG0237	dephospho-CoA kinase activity
ABD1_03090	COG0195	Participates in both transcription termination and antitermination
ABD1_03130	COG2212	antiporter activity
ABD1_03150	COG0651	ATP synthesis coupled electron transport
ABD1_03160	COG1006	Multisubunit Na H antiporter MnhC subunit
ABD1_03170	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABD1_03170	COG2111	Na H antiporter
ABD1_03200	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ABD1_03210	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABD1_03240	COG2226	methyltransferase
ABD1_03280	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
ABD1_03290	COG1074	ATP-dependent DNA helicase activity
ABD1_03300	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABD1_03340	COG0598	Magnesium transport protein CorA
ABD1_03350	COG0789	Transcriptional regulator
ABD1_03360	COG0484	heat shock protein binding
ABD1_03390	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABD1_03390	COG0475	glutathione-regulated potassium exporter activity
ABD1_03400	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ABD1_03440	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABD1_03460	COG4535	Mg2 and Co2 transporter CorC
ABD1_03470	COG0425	Belongs to the sulfur carrier protein TusA family
ABD1_03490	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
ABD1_03490	COG0644	oxidoreductase
ABD1_03510	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ABD1_03540	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABD1_03550	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ABD1_03620	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ABD1_03650	COG0534	Mate efflux family protein
ABD1_03670	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ABD1_03680	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_03690	COG0583	DNA-binding transcription factor activity
ABD1_03710	COG1530	ribonuclease E activity
ABD1_03740	COG0546	phosphoglycolate phosphatase activity
ABD1_03750	COG2378	regulation of single-species biofilm formation
ABD1_03760	COG0625	glutathione transferase activity
ABD1_03780	COG0583	DNA-binding transcription factor activity
ABD1_03900	COG0473	3-isopropylmalate dehydrogenase activity
ABD1_04000	COG1301	dicarboxylic acid transport
ABD1_04020	COG1560	Kdo2-lipid A biosynthetic process
ABD1_04030	COG1280	lysine exporter protein (LysE YggA)
ABD1_04070	COG1733	regulation of RNA biosynthetic process
ABD1_04120	COG0210	DNA helicase
ABD1_04130	COG0724	RNA recognition motif
ABD1_04170	COG4651	solute:proton antiporter activity
ABD1_04170	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ABD1_04180	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ABD1_04190	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ABD1_04220	COG0788	formyltetrahydrofolate deformylase activity
ABD1_04430	COG2813	Specifically methylates the guanine in position
ABD1_04430	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABD1_04450	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ABD1_04470	COG4774	siderophore transport
ABD1_04490	COG0740	serine-type endopeptidase activity
ABD1_04530	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
ABD1_04530	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
ABD1_04540	COG0280	phosphate acetyltransferase
ABD1_04540	COG0857	belongs to the CobB CobQ family
ABD1_04550	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ABD1_04570	COG0800	Aldolase
ABD1_04590	COG3265	gluconokinase activity
ABD1_04600	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_04620	COG2267	carboxylic ester hydrolase activity
ABD1_04650	COG0793	Belongs to the peptidase S41A family
ABD1_04720	COG1426	Protein conserved in bacteria
ABD1_04800	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABD1_04810	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ABD1_04830	COG0318	PFAM AMP-dependent synthetase and ligase
ABD1_04840	COG1216	Glycosyl transferase, family 2
ABD1_04860	COG2986	histidine ammonia-lyase
ABD1_04940	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_04950	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ABD1_04990	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ABD1_05010	COG1162	GTPase activity
ABD1_05020	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ABD1_05050	COG1538	Outer membrane efflux protein
ABD1_05060	COG1136	(ABC) transporter
ABD1_05060	COG0577	efflux transmembrane transporter activity
ABD1_05070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABD1_05120	COG0028	Belongs to the TPP enzyme family
ABD1_05130	COG0440	acetolactate synthase activity
ABD1_05180	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ABD1_05210	COG0084	hydrolase, TatD family'
ABD1_05230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ABD1_05250	COG0583	DNA-binding transcription factor activity
ABD1_05270	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABD1_05340	COG3013	Belongs to the UPF0304 family
ABD1_05380	COG1522	sequence-specific DNA binding
ABD1_05400	COG1113	amino acid transport
ABD1_05410	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABD1_05420	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABD1_05440	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_05460	COG0477	Major facilitator Superfamily
ABD1_05470	COG0235	Class ii aldolase
ABD1_05510	COG0583	DNA-binding transcription factor activity
ABD1_05630	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
ABD1_05660	COG0732	type I restriction modification DNA specificity domain
ABD1_05690	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
ABD1_05700	COG2814	Major facilitator Superfamily
ABD1_05720	COG0697	spore germination
ABD1_05730	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ABD1_05740	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ABD1_05750	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ABD1_05780	COG3622	Belongs to the hyi family
ABD1_05790	COG2084	Dehydrogenase
ABD1_05800	COG1024	Enoyl-CoA hydratase
ABD1_05810	COG5002	protein histidine kinase activity
ABD1_05810	COG2205	protein histidine kinase activity
ABD1_05810	COG0784	Response regulator, receiver
ABD1_05850	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABD1_05870	COG3956	TIGRFAM MazG family protein
ABD1_05880	COG1555	photosystem II stabilization
ABD1_05890	COG0617	tRNA 3'-terminal CCA addition
ABD1_05900	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ABD1_05940	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABD1_05950	COG3028	Belongs to the UPF0307 family
ABD1_05960	COG0318	PFAM AMP-dependent synthetase and ligase
ABD1_05990	COG0625	glutathione transferase activity
ABD1_06000	COG1238	metal cluster binding
ABD1_06030	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ABD1_06080	COG0072	phenylalanine-tRNA ligase activity
ABD1_06130	COG0248	Ppx GppA phosphatase
ABD1_06150	COG0037	tRNA processing
ABD1_06230	COG1764	response to oxidative stress
ABD1_06240	COG1846	Transcriptional regulator
ABD1_06260	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABD1_06330	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ABD1_06340	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ABD1_06350	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ABD1_06480	COG1214	PFAM Peptidase M22, glycoprotease
ABD1_06510	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ABD1_06530	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ABD1_06540	COG0561	phosphatase activity
ABD1_06560	COG2132	Multicopper oxidase
ABD1_06570	COG3667	copper resistance
ABD1_06600	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ABD1_06610	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ABD1_06620	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ABD1_06640	COG1063	alcohol dehydrogenase
ABD1_06650	COG0583	DNA-binding transcription factor activity
ABD1_06670	COG1960	acyl-CoA dehydrogenase activity
ABD1_06680	COG2814	Major facilitator Superfamily
ABD1_06690	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ABD1_06700	COG1309	transcriptional regulator
ABD1_06730	COG1053	succinate dehydrogenase
ABD1_06740	COG0583	DNA-binding transcription factor activity
ABD1_06770	COG0583	DNA-binding transcription factor activity
ABD1_06790	COG1473	amidohydrolase
ABD1_06830	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
ABD1_06840	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABD1_06940	COG0384	phenazine biosynthesis protein PhzF
ABD1_06970	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ABD1_07000	COG0745	RESPONSE REGULATOR receiver
ABD1_07010	COG2205	protein histidine kinase activity
ABD1_07080	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
ABD1_07140	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ABD1_07150	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ABD1_07200	COG0583	DNA-binding transcription factor activity
ABD1_07240	COG0668	transmembrane transport
ABD1_07260	COG2081	HI0933 family
ABD1_07270	COG2515	1-aminocyclopropane-1-carboxylate deaminase
ABD1_07330	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABD1_07330	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ABD1_07350	COG0489	protein tyrosine kinase activity
ABD1_07470	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ABD1_07490	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ABD1_07520	COG0730	response to heat
ABD1_07540	COG1196	nuclear chromosome segregation
ABD1_07580	COG2223	nitrite transmembrane transporter activity
ABD1_07590	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
ABD1_07600	COG1877	trehalose-phosphatase activity
ABD1_07610	COG2226	methyltransferase
ABD1_07610	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABD1_07610	COG0596	Alpha beta hydrolase
ABD1_07640	COG4106	trans-aconitate 2-methyltransferase activity
ABD1_07670	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ABD1_07680	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
ABD1_07690	COG0009	L-threonylcarbamoyladenylate synthase
ABD1_07700	COG3101	peptidyl-lysine hydroxylation
ABD1_07710	COG1399	metal-binding, possibly nucleic acid-binding protein
ABD1_07760	COG1652	LysM domain
ABD1_07770	COG0351	phosphomethylpyrimidine kinase
ABD1_07770	COG0352	thiamine-phosphate diphosphorylase activity
ABD1_07770	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABD1_07790	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
ABD1_07850	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABD1_07860	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
ABD1_07890	COG0358	DNA primase activity
ABD1_07910	COG0564	pseudouridine synthase activity
ABD1_07960	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABD1_07980	COG0583	DNA-binding transcription factor activity
ABD1_07990	COG0473	3-isopropylmalate dehydrogenase activity
ABD1_08030	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_08060	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
ABD1_08060	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
ABD1_08180	COG0456	acetyltransferase
ABD1_08200	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ABD1_08210	COG0492	ferredoxin-NADP+ reductase activity
ABD1_08220	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ABD1_08220	COG1674	ftsk spoiiie
ABD1_08230	COG1280	lysine exporter protein (LysE YggA)
ABD1_08260	COG2894	cell division
ABD1_08290	COG0204	Acyl-transferase
ABD1_08300	COG2885	chlorophyll binding
ABD1_08310	COG0210	DNA helicase
ABD1_08330	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ABD1_08360	COG0121	glutamine amidotransferase
ABD1_08400	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABD1_08410	COG0735	belongs to the Fur family
ABD1_08460	COG0420	3'-5' exonuclease activity
ABD1_08500	COG1090	epimerase
ABD1_08530	COG2050	protein possibly involved in aromatic compounds catabolism
ABD1_08550	COG2814	Major facilitator Superfamily
ABD1_08560	COG0405	Gamma-glutamyltransferase
ABD1_08570	COG0582	viral genome integration into host DNA
ABD1_08670	COG0477	Major facilitator Superfamily
ABD1_08680	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABD1_08750	COG0531	amino acid
ABD1_08760	COG2040	homocysteine
ABD1_08810	COG1309	transcriptional regulator
ABD1_08820	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABD1_08830	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABD1_08850	COG1607	acyl-coa hydrolase
ABD1_08870	COG0523	cobalamin synthesis protein
ABD1_08890	COG4681	YaeQ
ABD1_08910	COG1649	PFAM Uncharacterised BCR, COG1649
ABD1_08910	COG0726	polysaccharide deacetylase
ABD1_08920	COG1215	transferase activity, transferring glycosyl groups
ABD1_08940	COG1024	Enoyl-CoA hydratase
ABD1_08970	COG1414	Transcriptional regulator
ABD1_09010	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_09040	COG2271	Major facilitator Superfamily
ABD1_09060	COG2267	carboxylic ester hydrolase activity
ABD1_09070	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_09090	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_09100	COG0028	Belongs to the TPP enzyme family
ABD1_09120	COG0477	Major facilitator Superfamily
ABD1_09140	COG0242	peptide deformylase activity
ABD1_09150	COG2066	Belongs to the glutaminase family
ABD1_09160	COG2207	Transcriptional regulator
ABD1_09170	COG2223	nitrite transmembrane transporter activity
ABD1_09200	COG0583	DNA-binding transcription factor activity
ABD1_09210	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_09220	COG2271	Major facilitator Superfamily
ABD1_09230	COG3959	Transketolase, thiamine diphosphate binding domain
ABD1_09240	COG3958	Transketolase
ABD1_09260	COG0306	phosphate transporter
ABD1_09300	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ABD1_09390	COG4181	ATPase activity
ABD1_09400	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ABD1_09450	COG0583	DNA-binding transcription factor activity
ABD1_09470	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABD1_09480	COG1773	rubredoxin
ABD1_09590	COG2851	Citrate transporter
ABD1_09600	COG1253	flavin adenine dinucleotide binding
ABD1_09690	COG0804	urea catabolic process
ABD1_09710	COG0830	nickel cation binding
ABD1_09740	COG0742	ribosomal rna small subunit methyltransferase
ABD1_09750	COG0768	penicillin binding
ABD1_09800	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ABD1_09810	COG2878	Part of a membrane complex involved in electron transport
ABD1_09820	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABD1_09840	COG3384	dioxygenase
ABD1_09900	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ABD1_10180	COG5410	chromosome segregation
ABD1_10510	COG2194	sulfuric ester hydrolase activity
ABD1_10570	COG0006	proline dipeptidase activity
ABD1_10580	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABD1_10590	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABD1_10640	COG1279	arginine transmembrane transporter activity
ABD1_10650	COG0583	DNA-binding transcription factor activity
ABD1_10730	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABD1_10740	COG1388	LysM domain
ABD1_10740	COG0741	lytic transglycosylase activity
ABD1_10740	COG1388	LysM domain
ABD1_10740	COG0741	lytic transglycosylase activity
ABD1_10760	COG4174	ABC transporter (Permease)
ABD1_10770	COG4239	(ABC) transporter, permease
ABD1_10780	COG4172	Belongs to the ABC transporter superfamily
ABD1_10810	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
ABD1_10830	COG5001	Diguanylate cyclase
ABD1_10830	COG2203	Gaf domain
ABD1_10830	COG3706	GGDEF domain
ABD1_10830	COG4251	negative regulation of phosphorylation
ABD1_10850	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABD1_10850	COG1902	pentaerythritol trinitrate reductase activity
ABD1_10950	COG1113	amino acid transport
ABD1_10970	COG0531	amino acid
ABD1_11020	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_11060	COG1113	amino acid transport
ABD1_11070	COG1741	Belongs to the pirin family
ABD1_11100	COG2072	flavoprotein involved in K transport
ABD1_11120	COG2252	PERMEase
ABD1_11130	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ABD1_11140	COG3038	cytochrome b561
ABD1_11160	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ABD1_11470	COG5410	chromosome segregation
ABD1_11690	COG1598	PFAM Uncharacterised protein family UPF0150
ABD1_11840	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ABD1_11850	COG0582	viral genome integration into host DNA
ABD1_11870	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ABD1_11890	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ABD1_11910	COG0667	Aldo Keto reductase
ABD1_11940	COG1765	OsmC-like protein
ABD1_12040	COG2885	chlorophyll binding
ABD1_12060	COG0625	glutathione transferase activity
ABD1_12070	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ABD1_12110	COG3634	alkyl hydroperoxide reductase activity
ABD1_12130	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ABD1_12150	COG0450	alkyl hydroperoxide reductase
ABD1_12160	COG1643	Atp-dependent helicase
ABD1_12190	COG2814	Major facilitator Superfamily
ABD1_12200	COG3135	benzoate transporter
ABD1_12210	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_12220	COG0633	Ferredoxin
ABD1_12220	COG0543	2 iron, 2 sulfur cluster binding
ABD1_12230	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ABD1_12240	COG4638	Rieske (2fe-2S)
ABD1_12250	COG0583	DNA-binding transcription factor activity
ABD1_12350	COG1570	exodeoxyribonuclease VII activity
ABD1_12400	COG1280	lysine exporter protein (LysE YggA)
ABD1_12410	COG1278	Cold shock
ABD1_12480	COG2814	Major facilitator Superfamily
ABD1_12490	COG1733	regulation of RNA biosynthetic process
ABD1_12570	COG3727	T/G mismatch-specific endonuclease activity
ABD1_12600	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ABD1_12620	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
ABD1_12630	COG1137	ATPase activity
ABD1_12640	COG1538	Outer membrane efflux protein
ABD1_12720	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ABD1_12750	COG1522	sequence-specific DNA binding
ABD1_12760	COG5006	permease, DMT superfamily
ABD1_12780	COG1560	Kdo2-lipid A biosynthetic process
ABD1_12800	COG2814	Major facilitator Superfamily
ABD1_12840	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABD1_12900	COG0583	DNA-binding transcription factor activity
ABD1_12910	COG1914	H( )-stimulated, divalent metal cation uptake system
ABD1_12950	COG4770	biotin carboxylase activity
ABD1_12960	COG0038	chloride channel
ABD1_13000	COG1309	transcriptional regulator
ABD1_13020	COG1063	alcohol dehydrogenase
ABD1_13050	COG0439	Biotin carboxylase
ABD1_13060	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABD1_13070	COG1733	regulation of RNA biosynthetic process
ABD1_13100	COG0864	Transcriptional regulator
ABD1_13120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABD1_13130	COG1116	anion transmembrane transporter activity
ABD1_13250	COG0590	tRNA wobble adenosine to inosine editing
ABD1_13260	COG2807	transmembrane transport
ABD1_13290	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ABD1_13300	COG0789	Transcriptional regulator
ABD1_13320	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABD1_13360	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ABD1_13410	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_13420	COG0531	amino acid
ABD1_13430	COG1760	l-serine dehydratase
ABD1_13440	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_13440	COG2030	dehydratase
ABD1_13450	COG3396	Phenylacetate-CoA oxygenase
ABD1_13460	COG3460	Phenylacetate-CoA oxygenase
ABD1_13470	COG3396	Phenylacetate-CoA oxygenase
ABD1_13480	COG2151	metal-sulfur cluster biosynthetic enzyme
ABD1_13490	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABD1_13500	COG1024	Enoyl-CoA hydratase
ABD1_13510	COG1024	Enoyl-CoA hydratase
ABD1_13520	COG1250	3-hydroxyacyl-CoA dehydrogenase
ABD1_13530	COG0183	Belongs to the thiolase family
ABD1_13540	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
ABD1_13550	COG3327	negative regulation of DNA-templated transcription, initiation
ABD1_13570	COG2050	protein possibly involved in aromatic compounds catabolism
ABD1_13620	COG0406	alpha-ribazole phosphatase activity
ABD1_13680	COG0583	DNA-binding transcription factor activity
ABD1_13710	COG1024	Enoyl-CoA hydratase
ABD1_13720	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABD1_13730	COG1960	acyl-CoA dehydrogenase activity
ABD1_13740	COG1309	transcriptional regulator
ABD1_13750	COG0318	PFAM AMP-dependent synthetase and ligase
ABD1_13790	COG0583	DNA-binding transcription factor activity
ABD1_13880	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_13910	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ABD1_13950	COG0784	Response regulator, receiver
ABD1_13950	COG2205	protein histidine kinase activity
ABD1_13990	COG0765	amino acid transport
ABD1_14000	COG0765	amino acid transport
ABD1_14010	COG1126	abc transporter atp-binding protein
ABD1_14020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABD1_14030	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ABD1_14060	COG1280	lysine exporter protein (LysE YggA)
ABD1_14070	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ABD1_14080	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABD1_14090	COG1045	serine acetyltransferase
ABD1_14110	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_14120	COG0583	DNA-binding transcription factor activity
ABD1_14130	COG0625	glutathione transferase activity
ABD1_14140	COG0625	glutathione transferase activity
ABD1_14150	COG0583	DNA-binding transcription factor activity
ABD1_14170	COG1346	cytolysis
ABD1_14210	COG2814	Major facilitator Superfamily
ABD1_14230	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
ABD1_14240	COG3052	prosthetic group binding
ABD1_14280	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
ABD1_14320	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABD1_14340	COG1294	oxidase, subunit
ABD1_14350	COG1271	oxidase subunit
ABD1_14420	COG4521	taurine ABC transporter
ABD1_14430	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ABD1_14440	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABD1_14450	COG2175	clavaminate synthase activity
ABD1_14470	COG1953	Uracil, thiamine, allantoin
ABD1_14490	COG0583	DNA-binding transcription factor activity
ABD1_14510	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
ABD1_14540	COG0640	Transcriptional regulator
ABD1_14550	COG0798	PFAM Bile acid sodium symporter
ABD1_14560	COG0583	DNA-binding transcription factor activity
ABD1_14580	COG3634	alkyl hydroperoxide reductase activity
ABD1_14650	COG1301	dicarboxylic acid transport
ABD1_14660	COG0436	Aminotransferase
ABD1_14680	COG0386	Belongs to the glutathione peroxidase family
ABD1_14760	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ABD1_14810	COG0012	GTP binding
ABD1_14820	COG2011	ABC-type metal ion transport system permease component
ABD1_14830	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABD1_14850	COG1464	Belongs to the NlpA lipoprotein family
ABD1_14910	COG0765	amino acid transport
ABD1_14920	COG0765	amino acid transport
ABD1_14930	COG1126	abc transporter atp-binding protein
ABD1_14950	COG1522	sequence-specific DNA binding
ABD1_14980	COG1309	transcriptional regulator
ABD1_15010	COG0583	DNA-binding transcription factor activity
ABD1_15030	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ABD1_15050	COG0697	spore germination
ABD1_15120	COG3121	Chaperone
ABD1_15130	COG3539	Fimbrial protein
ABD1_15180	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ABD1_15180	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ABD1_15290	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ABD1_15310	COG2353	YceI-like domain
ABD1_15330	COG3698	Phosphodiester glycosidase
ABD1_15360	COG0506	proline dehydrogenase activity
ABD1_15360	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ABD1_15360	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ABD1_15380	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABD1_15390	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ABD1_15430	COG1132	(ABC) transporter
ABD1_15440	COG3122	Protein conserved in bacteria
ABD1_15450	COG3619	membrane
ABD1_15470	COG0640	Transcriptional regulator
ABD1_15490	COG2850	peptidyl-arginine hydroxylation
ABD1_15500	COG0424	maF-like protein
ABD1_15540	COG0191	fructose-bisphosphate aldolase activity
ABD1_15550	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABD1_15580	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ABD1_15600	COG1192	Involved in chromosome partitioning
ABD1_15610	COG1475	DNA binding
ABD1_15620	COG0811	peptide transport
ABD1_15640	COG1132	(ABC) transporter
ABD1_15650	COG1663	tetraacyldisaccharide 4'-kinase activity
ABD1_15690	COG0084	hydrolase, TatD family'
ABD1_15720	COG2165	general secretion pathway protein
ABD1_15780	COG0590	tRNA wobble adenosine to inosine editing
ABD1_15820	COG0776	regulation of translation
ABD1_15880	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ABD1_15890	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ABD1_15970	COG0339	signal peptide processing
ABD1_15990	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ABD1_16060	COG0702	epimerase
ABD1_16070	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABD1_16110	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ABD1_16170	COG0316	Belongs to the HesB IscA family
ABD1_16180	COG0822	iron-sulfur transferase activity
ABD1_16230	COG0776	regulation of translation
ABD1_16240	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ABD1_16250	COG2207	Transcriptional regulator
ABD1_16260	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABD1_16270	COG1960	acyl-CoA dehydrogenase activity
ABD1_16280	COG1960	acyl-CoA dehydrogenase activity
ABD1_16310	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ABD1_16350	COG4264	IucA IucC family
ABD1_16360	COG4264	IucA IucC family
ABD1_16380	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ABD1_16460	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
ABD1_16500	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABD1_16510	COG0730	response to heat
ABD1_16540	COG4773	Receptor
ABD1_16550	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABD1_16580	COG1131	(ABC) transporter
ABD1_16590	COG0842	Transport permease protein
ABD1_16600	COG0842	Transport permease protein
ABD1_16650	COG0537	adenosine 5'-monophosphoramidase activity
ABD1_16710	COG2226	methyltransferase
ABD1_16760	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ABD1_16830	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABD1_16850	COG0133	tryptophan synthase activity
ABD1_16880	COG3706	GGDEF domain
ABD1_16910	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABD1_16920	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ABD1_16930	COG0022	dehydrogenase e1 component
ABD1_16940	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABD1_16950	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABD1_16970	COG1063	alcohol dehydrogenase
ABD1_16980	COG3781	membrane
ABD1_17000	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABD1_17000	COG3453	Protein conserved in bacteria
ABD1_17020	COG0730	response to heat
ABD1_17050	COG3708	Transcriptional regulator
ABD1_17050	COG2207	Transcriptional regulator
ABD1_17060	COG1733	regulation of RNA biosynthetic process
ABD1_17070	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ABD1_17120	COG4521	taurine ABC transporter
ABD1_17130	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ABD1_17170	COG0477	Major facilitator Superfamily
ABD1_17190	COG1027	Aspartate ammonia-lyase
ABD1_17220	COG0583	DNA-binding transcription factor activity
ABD1_17230	COG0583	DNA-binding transcription factor activity
ABD1_17240	COG0183	Belongs to the thiolase family
ABD1_17250	COG2031	fatty acid transporter
ABD1_17280	COG0583	DNA-binding transcription factor activity
ABD1_17290	COG2610	gluconate transmembrane transporter activity
ABD1_17300	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_17310	COG2207	Transcriptional regulator
ABD1_17330	COG0412	Dienelactone hydrolase
ABD1_17340	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_17360	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABD1_17390	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABD1_17390	COG0543	2 iron, 2 sulfur cluster binding
ABD1_17400	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ABD1_17410	COG4638	Rieske (2fe-2S)
ABD1_17430	COG0725	ABC transporter, periplasmic molybdate-binding protein
ABD1_17440	COG4149	molybdate abc transporter
ABD1_17450	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
ABD1_17460	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_17470	COG1535	isochorismatase
ABD1_17470	COG3433	isochorismatase activity
ABD1_17600	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABD1_17630	COG0753	catalase activity
ABD1_17650	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ABD1_17690	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ABD1_17700	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABD1_17710	COG0745	RESPONSE REGULATOR receiver
ABD1_17720	COG2205	protein histidine kinase activity
ABD1_17740	COG2207	Transcriptional regulator
ABD1_17770	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_17780	COG1204	response to ionizing radiation
ABD1_17860	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ABD1_18020	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ABD1_18040	COG1309	transcriptional regulator
ABD1_18110	COG1120	ATPase activity
ABD1_18140	COG1064	alcohol dehydrogenase
ABD1_18150	COG2207	Transcriptional regulator
ABD1_18160	COG2084	Dehydrogenase
ABD1_18180	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABD1_18190	COG0583	DNA-binding transcription factor activity
ABD1_18210	COG0129	dihydroxy-acid dehydratase activity
ABD1_18220	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_18250	COG1566	PFAM secretion protein HlyD family protein
ABD1_18270	COG0583	DNA-binding transcription factor activity
ABD1_18410	COG0318	PFAM AMP-dependent synthetase and ligase
ABD1_18430	COG1960	acyl-CoA dehydrogenase activity
ABD1_18450	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_18460	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_18470	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_18480	COG0583	DNA-binding transcription factor activity
ABD1_18490	COG1309	transcriptional regulator
ABD1_18540	COG0789	Transcriptional regulator
ABD1_18570	COG1902	pentaerythritol trinitrate reductase activity
ABD1_18570	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABD1_18600	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_18640	COG2186	Transcriptional regulator
ABD1_18660	COG0583	DNA-binding transcription factor activity
ABD1_18670	COG4948	Mandelate Racemase Muconate Lactonizing
ABD1_18680	COG4829	muconolactone delta-isomerase
ABD1_18700	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABD1_18710	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABD1_18720	COG0183	Belongs to the thiolase family
ABD1_18730	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ABD1_18750	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_18770	COG3733	amine oxidase
ABD1_18790	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABD1_18810	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_18830	COG4638	Rieske (2fe-2S)
ABD1_18870	COG0154	amidase activity
ABD1_18890	COG2814	Major facilitator Superfamily
ABD1_18940	COG1960	acyl-CoA dehydrogenase activity
ABD1_18950	COG0583	DNA-binding transcription factor activity
ABD1_18960	COG1414	Transcriptional regulator
ABD1_18990	COG2391	methyltransferase activity
ABD1_19010	COG4993	Dehydrogenase
ABD1_19020	COG3659	wide pore channel activity
ABD1_19030	COG3420	alginic acid biosynthetic process
ABD1_19040	COG0710	3-dehydroquinate dehydratase activity
ABD1_19050	COG3485	protocatechuate 3,4-dioxygenase
ABD1_19060	COG3485	protocatechuate 3,4-dioxygenase
ABD1_19070	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ABD1_19080	COG2271	Major facilitator Superfamily
ABD1_19090	COG0596	Alpha beta hydrolase
ABD1_19100	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
ABD1_19110	COG0183	Belongs to the thiolase family
ABD1_19120	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ABD1_19130	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
ABD1_19150	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ABD1_19160	COG2323	membrane
ABD1_19250	COG1902	pentaerythritol trinitrate reductase activity
ABD1_19250	COG0446	pyridine nucleotide-disulphide oxidoreductase
ABD1_19280	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ABD1_19300	COG0542	response to heat
ABD1_19310	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ABD1_19380	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABD1_19390	COG0569	domain protein
ABD1_19400	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ABD1_19440	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ABD1_19480	COG1294	oxidase, subunit
ABD1_19500	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
ABD1_19520	COG0552	protein localization to endoplasmic reticulum
ABD1_19570	COG0517	IMP dehydrogenase activity
ABD1_19570	COG0516	GMP reductase activity
ABD1_19580	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABD1_19590	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ABD1_19610	COG0583	DNA-binding transcription factor activity
ABD1_19620	COG0024	Methionine aminopeptidase
ABD1_19670	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ABD1_19670	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
ABD1_19680	COG1105	Belongs to the carbohydrate kinase PfkB family
ABD1_19690	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
ABD1_19690	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ABD1_19690	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
ABD1_19720	COG5001	Diguanylate cyclase
ABD1_19720	COG3300	MHYT domain
ABD1_19750	COG2135	peptidase activity
ABD1_19760	COG0659	secondary active sulfate transmembrane transporter activity
ABD1_19790	COG1113	amino acid transport
ABD1_19810	COG1522	sequence-specific DNA binding
ABD1_19860	COG1011	Hydrolase
ABD1_19870	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ABD1_19890	COG2137	regulation of response to DNA damage stimulus
ABD1_19910	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABD1_19950	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ABD1_19980	COG0575	Belongs to the CDS family
ABD1_19990	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ABD1_20030	COG3852	Histidine kinase
ABD1_20040	COG2204	response regulator
ABD1_20140	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ABD1_20150	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
ABD1_20190	COG0697	spore germination
ABD1_20200	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABD1_20220	COG0303	'Molybdopterin
ABD1_20230	COG0521	Mo-molybdopterin cofactor biosynthetic process
ABD1_20230	COG0315	cyclic pyranopterin monophosphate synthase activity
ABD1_20260	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ABD1_20270	COG0243	molybdopterin cofactor binding
ABD1_20290	COG0243	molybdopterin cofactor binding
ABD1_20300	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABD1_20310	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABD1_20310	COG2146	nitrite reductase [NAD(P)H] activity
ABD1_20320	COG0745	RESPONSE REGULATOR receiver
ABD1_20330	COG1116	anion transmembrane transporter activity
ABD1_20330	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
ABD1_20360	COG0511	ligase activity, forming carbon-carbon bonds
ABD1_20390	COG2814	Major facilitator Superfamily
ABD1_20430	COG0069	glutamate synthase activity
ABD1_20470	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
ABD1_20490	COG1454	alcohol dehydrogenase
ABD1_20500	COG0824	Thioesterase
ABD1_20520	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ABD1_20580	COG0183	Belongs to the thiolase family
ABD1_20600	COG0583	DNA-binding transcription factor activity
ABD1_20630	COG1522	sequence-specific DNA binding
ABD1_20640	COG3135	benzoate transporter
ABD1_20660	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ABD1_20700	COG0589	response to stress
ABD1_20710	COG0488	(ABC) transporter
ABD1_20740	COG4773	Receptor
ABD1_20800	COG0668	transmembrane transport
ABD1_20820	COG1309	transcriptional regulator
ABD1_20850	COG1605	Chorismate mutase
ABD1_20930	COG0308	aminopeptidase N
ABD1_20980	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
ABD1_20990	COG1454	alcohol dehydrogenase
ABD1_21030	COG0531	amino acid
ABD1_21040	COG4303	Ethanolamine ammonia lyase large subunit
ABD1_21050	COG4302	ethanolamine ammonia-lyase activity
ABD1_21060	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ABD1_21060	COG0519	Catalyzes the synthesis of GMP from XMP
ABD1_21090	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ABD1_21110	COG0697	spore germination
ABD1_21120	COG1923	regulation of RNA biosynthetic process
ABD1_21140	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ABD1_21150	COG0802	atpase or kinase
ABD1_21190	COG1187	pseudouridine synthase activity
ABD1_21220	COG0583	DNA-binding transcription factor activity
ABD1_21250	COG2814	Major facilitator Superfamily
ABD1_21260	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ABD1_21310	COG0729	surface antigen
ABD1_21350	COG0174	glutamine synthetase
ABD1_21360	COG0745	RESPONSE REGULATOR receiver
ABD1_21370	COG2205	protein histidine kinase activity
ABD1_21390	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ABD1_21400	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ABD1_21450	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABD1_21460	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABD1_21470	COG1960	acyl-CoA dehydrogenase activity
ABD1_21530	COG0583	DNA-binding transcription factor activity
ABD1_21560	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ABD1_21580	COG3658	cytochrome
ABD1_21590	COG1215	transferase activity, transferring glycosyl groups
ABD1_21600	COG0726	polysaccharide deacetylase
ABD1_21600	COG1649	PFAM Uncharacterised BCR, COG1649
ABD1_21650	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ABD1_21660	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ABD1_21680	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ABD1_21730	COG0305	Participates in initiation and elongation during chromosome replication
ABD1_21740	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ABD1_21760	COG1305	Transglutaminase-like
ABD1_21780	COG2308	Evidence 4 Homologs of previously reported genes of
ABD1_21840	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ABD1_21850	COG0138	bifunctional purine biosynthesis protein purh
ABD1_21860	COG0151	Belongs to the GarS family
ABD1_21870	COG1464	Belongs to the NlpA lipoprotein family
ABD1_21880	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ABD1_21890	COG2011	ABC-type metal ion transport system permease component
ABD1_21900	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABD1_21920	COG1301	dicarboxylic acid transport
ABD1_21980	COG1794	racemase activity, acting on amino acids and derivatives
ABD1_22000	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ABD1_22000	COG3008	intermembrane lipid transfer
ABD1_22010	COG2995	paraquat-inducible protein a
ABD1_22070	COG1051	belongs to the nudix hydrolase family
ABD1_22080	COG0477	Major facilitator Superfamily
ABD1_22180	COG2186	Transcriptional regulator
ABD1_22200	COG0786	glutamate:sodium symporter activity
ABD1_22210	COG3243	poly(R)-hydroxyalkanoic acid synthase
ABD1_22260	COG3111	PFAM Bacterial OB fold (BOF) protein
ABD1_22410	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ABD1_22420	COG1610	YqeY-like protein
ABD1_22430	COG4783	chaperone-mediated protein folding
ABD1_22540	COG0778	Nitroreductase
ABD1_22560	COG0513	Belongs to the DEAD box helicase family
ABD1_22600	COG2363	Small membrane protein
ABD1_22660	COG4650	regulator
ABD1_22670	COG1234	tRNA 3'-trailer cleavage
ABD1_22680	COG1690	Belongs to the RtcB family
ABD1_22720	COG2195	Cleaves the N-terminal amino acid of tripeptides
ABD1_22740	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ABD1_22770	COG1960	acyl-CoA dehydrogenase activity
ABD1_22780	COG1301	dicarboxylic acid transport
ABD1_22790	COG0512	Glutamine amidotransferase of anthranilate synthase
ABD1_22790	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ABD1_22800	COG3139	Protein of unknown function (DUF1315)
ABD1_22810	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ABD1_22820	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ABD1_22840	COG0494	nUDIX hydrolase
ABD1_22860	COG0642	Histidine kinase
ABD1_22870	COG0745	RESPONSE REGULATOR receiver
ABD1_22910	COG1720	tRNA m6t6A37 methyltransferase activity
ABD1_22940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABD1_22960	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ABD1_22980	COG4598	ABC transporter
ABD1_22990	COG4160	amino acid transport
ABD1_23000	COG4215	(ABC) transporter
ABD1_23030	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABD1_23050	COG1538	Outer membrane efflux protein
ABD1_23120	COG1131	(ABC) transporter
ABD1_23130	COG0842	Transport permease protein
ABD1_23160	COG0772	Belongs to the SEDS family
ABD1_23170	COG2951	lytic endotransglycosylase activity
ABD1_23210	COG2207	Transcriptional regulator
ABD1_23240	COG0052	Belongs to the universal ribosomal protein uS2 family
ABD1_23250	COG0024	Methionine aminopeptidase
ABD1_23270	COG2223	nitrite transmembrane transporter activity
ABD1_23300	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABD1_23310	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ABD1_23320	COG1960	acyl-CoA dehydrogenase activity
ABD1_23350	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ABD1_23360	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ABD1_23370	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABD1_23410	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABD1_23420	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABD1_23430	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ABD1_23470	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ABD1_23500	COG3104	oligopeptide transport
ABD1_23520	COG0512	Glutamine amidotransferase of anthranilate synthase
ABD1_23530	COG0308	aminopeptidase N
ABD1_23590	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ABD1_23650	COG3739	integral membrane protein
ABD1_23700	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
ABD1_23720	COG1132	(ABC) transporter
ABD1_23750	COG3433	isochorismatase activity
ABD1_23750	COG1535	isochorismatase
ABD1_23760	COG1021	2,3-dihydroxybenzoate-AMP ligase
ABD1_23770	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABD1_23790	COG4774	siderophore transport
ABD1_23800	COG4607	ABC-type enterochelin transport system periplasmic component
ABD1_23810	COG4604	ABC transporter, ATP-binding protein
ABD1_23820	COG4605	iron ion homeostasis
ABD1_23830	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ABD1_23840	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABD1_23870	COG2964	Protein conserved in bacteria
ABD1_23890	COG1741	Belongs to the pirin family
ABD1_23940	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ABD1_23960	COG0596	Alpha beta hydrolase
ABD1_23990	COG0583	DNA-binding transcription factor activity
ABD1_24000	COG1335	isochorismatase
ABD1_24070	COG2879	small protein
ABD1_24080	COG1966	Carbon starvation protein
ABD1_24120	COG4943	cyclic-guanylate-specific phosphodiesterase activity
ABD1_24170	COG1067	ATP-dependent peptidase activity
ABD1_24180	COG0583	DNA-binding transcription factor activity
ABD1_24230	COG1686	Belongs to the peptidase S11 family
ABD1_24240	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
ABD1_24310	COG0616	signal peptide processing
ABD1_24320	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ABD1_24340	COG0573	inorganic phosphate transmembrane transporter activity
ABD1_24350	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ABD1_24360	COG1113	amino acid transport
ABD1_24370	COG3961	Belongs to the TPP enzyme family
ABD1_24380	COG1522	sequence-specific DNA binding
ABD1_24400	COG0076	glutamate decarboxylase activity
ABD1_24410	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ABD1_24440	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABD1_24460	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABD1_24530	COG0352	thiamine-phosphate diphosphorylase activity
ABD1_24580	COG0612	Peptidase, M16
ABD1_24610	COG0583	DNA-binding transcription factor activity
ABD1_24620	COG0477	Major facilitator Superfamily
ABD1_24660	COG1187	pseudouridine synthase activity
ABD1_24690	COG1686	Belongs to the peptidase S11 family
ABD1_24700	COG1252	NADH dehydrogenase
ABD1_24720	COG0415	Belongs to the DNA photolyase family
ABD1_24750	COG1215	transferase activity, transferring glycosyl groups
ABD1_24810	COG2070	2-Nitropropane dioxygenase
ABD1_24920	COG0556	nucleotide-excision repair
ABD1_25000	COG4221	oxidoreductase activity
ABD1_25020	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ABD1_25030	COG1381	Involved in DNA repair and RecF pathway recombination
ABD1_25050	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ABD1_25080	COG0681	Belongs to the peptidase S26 family
ABD1_25100	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ABD1_25120	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ABD1_25160	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ABD1_25170	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
ABD1_25180	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ABD1_25200	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
ABD1_25210	COG4208	sulfate ABC transporter
ABD1_25220	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ABD1_25230	COG0583	DNA-binding transcription factor activity
ABD1_25240	COG4625	pathogenesis
ABD1_25270	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ABD1_25300	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ABD1_25330	COG1024	Enoyl-CoA hydratase
ABD1_25340	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ABD1_25360	COG2814	Major facilitator Superfamily
ABD1_25370	COG0047	phosphoribosylformylglycinamidine synthase activity
ABD1_25370	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ABD1_25410	COG1473	amidohydrolase
ABD1_25420	COG0824	Thioesterase
ABD1_25460	COG0823	Involved in the tonB-independent uptake of proteins
ABD1_25500	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ABD1_25570	COG0628	permease
ABD1_25590	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ABD1_25600	COG0596	Alpha beta hydrolase
ABD1_25610	COG0616	signal peptide processing
ABD1_25610	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ABD1_25630	COG2333	competence protein COMEC
ABD1_25630	COG0658	competence protein
ABD1_25640	COG1136	(ABC) transporter
ABD1_25650	COG4591	ABC-type transport system involved in lipoprotein release permease component
ABD1_25720	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABD1_25760	COG0463	Glycosyl transferase, family 2
ABD1_25820	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ABD1_25830	COG1280	lysine exporter protein (LysE YggA)
ABD1_25850	COG0019	diaminopimelate decarboxylase activity
ABD1_25870	COG1113	amino acid transport
ABD1_25900	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
ABD1_25920	COG3339	Conserved Protein
ABD1_25930	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ABD1_25940	COG0243	molybdopterin cofactor binding
ABD1_25950	COG1929	Belongs to the glycerate kinase type-1 family
ABD1_25980	COG0778	Nitroreductase
ABD1_26020	COG3811	Belongs to the UPF0386 family
ABD1_26040	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABD1_26060	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ABD1_26100	COG0741	lytic transglycosylase activity
ABD1_26140	COG0584	glycerophosphoryl diester phosphodiesterase
ABD1_26190	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ABD1_26230	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ABD1_26240	COG0477	Major facilitator Superfamily
ABD1_26310	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
ABD1_26320	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ABD1_26370	COG0505	Belongs to the CarA family
ABD1_26410	COG0589	response to stress
ABD1_26440	COG2843	Capsule synthesis protein
ABD1_26460	COG2321	neutral zinc metallopeptidase
ABD1_26470	COG2354	Protein conserved in bacteria
ABD1_26510	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ABD1_26540	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ABD1_26550	COG1053	succinate dehydrogenase
ABD1_26560	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ABD1_26570	COG2009	succinate dehydrogenase
ABD1_26650	COG2921	Belongs to the UPF0250 family
ABD1_26660	COG0321	lipoyl(octanoyl) transferase activity
ABD1_26690	COG0531	amino acid
ABD1_26710	COG1733	regulation of RNA biosynthetic process
ABD1_26720	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ABD1_26730	COG1648	precorrin-2 dehydrogenase activity
ABD1_26730	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ABD1_26760	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ABD1_26810	COG0671	phosphoesterase, PA-phosphatase related
ABD1_26820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABD1_26840	COG1538	Outer membrane efflux protein
ABD1_26850	COG0393	Putative heavy-metal-binding
ABD1_26860	COG0393	Putative heavy-metal-binding
ABD1_26880	COG1028	Short-chain dehydrogenase reductase Sdr
ABD1_26900	COG0525	valine-tRNA ligase activity
ABD1_26940	COG0583	DNA-binding transcription factor activity
ABD1_26950	COG0004	ammonium transporteR
ABD1_26970	COG0642	Histidine kinase
ABD1_26980	COG0745	RESPONSE REGULATOR receiver
ABD1_26990	COG2194	sulfuric ester hydrolase activity
ABD1_27030	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABD1_27060	COG2315	Protein conserved in bacteria
ABD1_27070	COG0142	geranyltranstransferase activity
ABD1_27080	COG2828	Protein conserved in bacteria
ABD1_27090	COG1113	amino acid transport
ABD1_27130	COG2207	Transcriptional regulator
ABD1_27180	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABD1_27220	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
ABD1_27240	COG1530	ribonuclease E activity
ABD1_27250	COG0424	maF-like protein
ABD1_27270	COG1792	Involved in formation and maintenance of cell shape
ABD1_27280	COG1077	Cell shape determining protein MreB Mrl
ABD1_27290	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABD1_27310	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ABD1_27360	COG3590	peptidase
ABD1_27370	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
ABD1_27380	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ABD1_27390	COG1752	Esterase of the alpha-beta hydrolase superfamily
ABD1_27400	COG1115	amino acid carrier protein
ABD1_27440	COG2814	Major facilitator Superfamily
ABD1_27450	COG1289	transmembrane transporter activity
ABD1_27490	COG1376	ErfK ybiS ycfS ynhG family protein
ABD1_27500	COG2832	Protein of unknown function (DUF454)
ABD1_27520	COG5510	response to toxic substance
ABD1_27570	COG0840	transmembrane signaling receptor activity
ABD1_27650	COG3422	double-strand break repair
ABD1_27660	COG2824	Alkylphosphonate utilization operon protein PhnA
ABD1_27670	COG3189	MarR family transcriptional regulator
ABD1_27690	COG0354	folic acid binding
ABD1_27700	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABD1_27720	COG0679	Auxin Efflux Carrier
ABD1_27730	COG1902	pentaerythritol trinitrate reductase activity
ABD1_27740	COG4772	TonB-dependent receptor
ABD1_27750	COG2094	Belongs to the DNA glycosylase MPG family
ABD1_27810	COG2233	PERMEase
ABD1_27830	COG0833	amino acid
ABD1_27840	COG1690	Belongs to the RtcB family
ABD1_27860	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
ABD1_27860	COG2885	chlorophyll binding
ABD1_27880	COG0183	Belongs to the thiolase family
ABD1_27920	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ABD1_27970	COG0183	Belongs to the thiolase family
ABD1_28030	COG1272	protein, Hemolysin III
ABD1_28040	COG0477	Major facilitator Superfamily
ABD1_28070	COG0450	alkyl hydroperoxide reductase
ABD1_28110	COG0285	dihydrofolate synthase activity
ABD1_28180	COG0133	tryptophan synthase activity
ABD1_28210	COG2096	Adenosyltransferase
ABD1_28250	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ABD1_28260	COG0745	RESPONSE REGULATOR receiver
ABD1_28270	COG2205	protein histidine kinase activity
ABD1_28290	COG1960	acyl-CoA dehydrogenase activity
ABD1_28300	COG1960	acyl-CoA dehydrogenase activity
ABD1_28310	COG3223	Belongs to the PsiE family
ABD1_28400	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
ABD1_28430	COG0438	transferase activity, transferring glycosyl groups
ABD1_28440	COG0463	Glycosyl transferase, family 2
ABD1_28450	COG0726	polysaccharide deacetylase
ABD1_28490	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
ABD1_28500	COG2205	protein histidine kinase activity
ABD1_28560	COG1862	Preprotein translocase
ABD1_28580	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ABD1_28590	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ABD1_28610	COG3781	membrane
ABD1_28620	COG0613	PHP domain protein
ABD1_28640	COG2350	Protein conserved in bacteria
ABD1_28700	COG1607	acyl-coa hydrolase
ABD1_28730	COG3453	Protein conserved in bacteria
ABD1_28730	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ABD1_28770	COG2199	diguanylate cyclase activity
ABD1_28790	COG1408	metallophosphoesterase
ABD1_28800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ABD1_28820	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ABD1_28860	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ABD1_28870	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ABD1_28880	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ABD1_28900	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ABD1_28920	COG2969	positive regulation of protein catabolic process
ABD1_28960	COG1960	acyl-CoA dehydrogenase activity
ABD1_28970	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ABD1_29000	COG1309	transcriptional regulator
ABD1_29010	COG1960	acyl-CoA dehydrogenase activity
ABD1_29050	COG1183	phosphatidylcholine synthase activity
ABD1_29060	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ABD1_29120	COG1196	nuclear chromosome segregation
ABD1_29120	COG0741	lytic transglycosylase activity
ABD1_29120	COG0739	heme binding
ABD1_29140	COG1702	phosphate starvation-inducible protein PhoH
ABD1_29210	COG1295	ribonuclease BN
ABD1_29220	COG0697	spore germination
ABD1_29230	COG2169	Transcriptional regulator
ABD1_29240	COG0179	Fumarylacetoacetate (FAA) hydrolase
ABD1_29290	COG0557	exoribonuclease II activity
ABD1_29300	COG0339	signal peptide processing
ABD1_29310	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
ABD1_29370	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ABD1_29380	COG1960	acyl-CoA dehydrogenase activity
ABD1_29430	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ABD1_29450	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ABD1_29690	COG0626	cystathionine gamma-synthase activity
ABD1_29700	COG0433	COG0433 Predicted ATPase
ABD1_29710	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ABD1_29710	COG1017	nitric oxide dioxygenase activity
ABD1_29720	COG1959	2 iron, 2 sulfur cluster binding
ABD1_29750	COG1301	dicarboxylic acid transport
ABD1_29760	COG1946	Acyl-CoA thioesterase
ABD1_29800	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ABD1_29810	COG1040	competence protein
ABD1_29820	COG0494	nUDIX hydrolase
ABD1_29840	COG0598	Magnesium transport protein CorA
ABD1_29860	COG2854	intermembrane phospholipid transfer
ABD1_29880	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ABD1_29890	COG1127	ABC transporter
ABD1_29910	COG0513	Belongs to the DEAD box helicase family
ABD1_29950	COG0408	coproporphyrinogen oxidase activity
ABD1_29980	COG1960	acyl-CoA dehydrogenase activity
ABD1_30000	COG1983	PspC domain protein
ABD1_30010	COG0517	IMP dehydrogenase activity
ABD1_30100	COG0583	DNA-binding transcription factor activity
ABD1_30180	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_30200	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ABD1_30210	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ABD1_30220	COG0833	amino acid
ABD1_30290	COG0628	permease
ABD1_30310	COG1289	transmembrane transporter activity
ABD1_30340	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABD1_30350	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
ABD1_30370	COG0277	FAD linked oxidase domain protein
ABD1_30380	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ABD1_30430	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ABD1_30440	COG5380	lipid catabolic process
ABD1_30480	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ABD1_30580	COG0194	GDP metabolic process
ABD1_30600	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ABD1_30640	COG3307	-O-antigen
ABD1_30680	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
ABD1_30690	COG1704	LemA family
ABD1_30710	COG0493	'glutamate synthase
ABD1_30720	COG0069	glutamate synthase activity
ABD1_30720	COG0070	glutamate synthase
ABD1_30720	COG0067	glutamate synthase
ABD1_30820	COG2226	methyltransferase
ABD1_30850	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ABD1_30860	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ABD1_30930	COG0833	amino acid
ABD1_31040	COG0488	(ABC) transporter
ABD1_31060	COG4221	oxidoreductase activity
ABD1_31070	COG0659	secondary active sulfate transmembrane transporter activity
ABD1_31090	COG0745	RESPONSE REGULATOR receiver
ABD1_31110	COG0427	acetyl-CoA hydrolase
ABD1_31150	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ABD1_31230	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ABD1_31330	COG2207	Transcriptional regulator
ABD1_31340	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
ABD1_31380	COG2249	NAD(P)H dehydrogenase (quinone) activity
ABD1_31390	COG1733	regulation of RNA biosynthetic process
ABD1_31430	COG1733	regulation of RNA biosynthetic process
ABD1_31480	COG0667	Aldo Keto reductase
ABD1_31570	COG1309	transcriptional regulator
ABD1_31600	COG0583	DNA-binding transcription factor activity
ABD1_31610	COG2814	Major facilitator Superfamily
ABD1_31640	COG1401	restriction endodeoxyribonuclease activity
ABD1_31730	COG1335	isochorismatase
ABD1_31750	COG1012	belongs to the aldehyde dehydrogenase family
ABD1_31760	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ABD1_31780	COG1113	amino acid transport
ABD1_31800	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
ABD1_31830	COG2814	Major facilitator Superfamily
ABD1_31850	COG0351	phosphomethylpyrimidine kinase
ABD1_31850	COG0352	thiamine-phosphate diphosphorylase activity
ABD1_31850	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
ABD1_31890	COG1309	transcriptional regulator
ABD1_31900	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ABD1_31910	COG3706	GGDEF domain
ABD1_31930	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
ABD1_31950	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ABD1_31960	COG3162	membrane
ABD1_31970	COG2198	Histidine kinase
ABD1_31970	COG2205	protein histidine kinase activity
ABD1_31970	COG0784	Response regulator, receiver
ABD1_32020	COG1522	sequence-specific DNA binding
ABD1_32030	COG1335	isochorismatase
ABD1_32040	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ABD1_32060	COG0668	transmembrane transport
ABD1_32070	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ABD1_32080	COG1519	Transferase
ABD1_32090	COG1902	pentaerythritol trinitrate reductase activity
ABD1_32130	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ABD1_32180	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ABD1_32180	COG0426	domain, Protein
ABD1_32190	COG4774	siderophore transport
ABD1_32200	COG2119	membrane
ABD1_32220	COG0508	dehydrogenase complex catalyzes the overall conversion of
ABD1_32240	COG4942	peptidase
ABD1_32270	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
ABD1_32290	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ABD1_32330	COG0189	ligase activity
ABD1_32380	COG0708	Exodeoxyribonuclease III
ABD1_32390	COG1393	Belongs to the ArsC family
ABD1_32420	COG3706	GGDEF domain
ABD1_32490	COG2351	hydroxyisourate hydrolase activity
ABD1_32500	COG2233	PERMEase
ABD1_32520	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ABD1_32540	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
ABD1_32580	COG3150	esterase
ABD1_32660	COG3179	chitinase
ABD1_32670	COG3501	Rhs element vgr protein
ABD1_32690	COG2918	glutathione biosynthetic process
ABD1_32720	COG2733	membrane
ABD1_32730	COG0436	Aminotransferase
ABD1_32740	COG0534	Mate efflux family protein
ABD1_32840	COG0753	catalase activity
ABD1_32880	COG0560	Phosphoserine phosphatase
ABD1_32880	COG3830	Belongs to the UPF0237 family
ABD1_32930	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
ABD1_32950	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ABD1_32970	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
ABD1_33010	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ABD1_33020	COG0546	phosphoglycolate phosphatase activity
ABD1_33040	COG0010	Belongs to the arginase family
ABD1_33100	COG2188	Transcriptional regulator
ABD1_33120	COG0523	cobalamin synthesis protein
ABD1_33140	COG1113	amino acid transport
ABD1_33160	COG0625	glutathione transferase activity
ABD1_33200	COG1683	Conserved Protein
ABD1_33210	COG0534	Mate efflux family protein
ABD1_33220	COG0385	Bile acid
ABD1_33230	COG1335	isochorismatase
ABD1_33240	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ABD1_33280	COG2116	formate transmembrane transporter activity
ABD1_33290	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ABD1_33300	COG2133	pyrroloquinoline quinone binding
ABD1_33310	COG2983	Belongs to the UPF0260 family
ABD1_33350	COG1194	a g-specific adenine glycosylase
ABD1_33380	COG2818	Glycosylase
ABD1_33390	COG1064	alcohol dehydrogenase
ABD1_33400	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ABD1_33420	COG0583	DNA-binding transcription factor activity
ABD1_33430	COG0656	L-ascorbic acid biosynthetic process
ABD1_33440	COG2814	Major facilitator Superfamily
ABD1_33510	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ABD1_33540	COG2233	PERMEase
ABD1_33550	COG0583	DNA-binding transcription factor activity
ABD1_33620	COG0733	neurotransmitter:sodium symporter activity
ABD1_33660	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
ABD1_33710	COG0583	DNA-binding transcription factor activity
ABD1_33770	COG2951	lytic endotransglycosylase activity
ABD1_33780	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ABD1_33810	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ABD1_33830	COG0671	phosphoesterase, PA-phosphatase related
ABD1_33840	COG0861	Integral membrane protein TerC family
ABD1_33860	COG0754	glutathionylspermidine amidase activity
ABD1_33880	COG0402	S-adenosylhomocysteine deaminase activity
ABD1_33920	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ABD1_33930	COG1230	cation diffusion facilitator family transporter
ABD1_33960	COG0706	membrane insertase activity
ABD1_33990	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ABD1_p00040	COG4683	PFAM Phage derived protein Gp49-like (DUF891)