locus-tag class description AbD4_00001 PF00579 tRNA synthetases class I (W and Y) AbD4_00002 PF03702 Anhydro-N-acetylmuramic acid kinase AbD4_00003 PF00561 alpha/beta hydrolase fold AbD4_00004 PF01521 Iron-sulphur cluster biosynthesis AbD4_00008 PF00005 ABC transporter AbD4_00008 PF12848 ABC transporter AbD4_00009 PF09335 SNARE associated Golgi protein AbD4_00011 PF00204 DNA gyrase B AbD4_00011 PF00986 DNA gyrase B subunit, carboxyl terminus AbD4_00011 PF18053 DNA gyrase B subunit insert domain AbD4_00011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00011 PF01751 Toprim domain AbD4_00012 PF02463 RecF/RecN/SMC N terminal domain AbD4_00013 PF02768 DNA polymerase III beta subunit, C-terminal domain AbD4_00013 PF02767 DNA polymerase III beta subunit, central domain AbD4_00013 PF00712 DNA polymerase III beta subunit, N-terminal domain AbD4_00014 PF00308 Bacterial dnaA protein AbD4_00014 PF08299 Bacterial dnaA protein helix-turn-helix AbD4_00014 PF11638 DnaA N-terminal domain AbD4_00015 PF00468 Ribosomal protein L34 AbD4_00016 PF00825 Ribonuclease P AbD4_00017 PF01809 Putative membrane protein insertion efficiency factor AbD4_00018 PF02096 60Kd inner membrane protein AbD4_00018 PF14849 YidC periplasmic domain AbD4_00019 PF01926 50S ribosome-binding GTPase AbD4_00019 PF12631 MnmE helical domain AbD4_00019 PF10396 GTP-binding protein TrmE N-terminus AbD4_00020 PF00589 Phage integrase family AbD4_00020 PF02899 Phage integrase, N-terminal SAM-like domain AbD4_00031 PF06122 Conjugative relaxosome accessory transposon protein AbD4_00042 PF17728 BsuBI/PstI restriction endonuclease HTH domain AbD4_00042 PF06616 BsuBI/PstI restriction endonuclease domain AbD4_00044 PF02796 Helix-turn-helix domain of resolvase AbD4_00044 PF00239 Resolvase, N terminal domain AbD4_00045 PF13495 Phage integrase, N-terminal SAM-like domain AbD4_00045 PF00589 Phage integrase family AbD4_00046 PF00893 Small Multidrug Resistance protein AbD4_00047 PF01909 Nucleotidyltransferase domain AbD4_00047 PF13427 Domain of unknown function (DUF4111) AbD4_00048 PF01636 Phosphotransferase enzyme family AbD4_00049 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AbD4_00050 PF00589 Phage integrase family AbD4_00050 PF13495 Phage integrase, N-terminal SAM-like domain AbD4_00051 PF10706 Aminoglycoside-2''-adenylyltransferase AbD4_00052 PF00893 Small Multidrug Resistance protein AbD4_00053 PF00809 Pterin binding enzyme AbD4_00055 PF00005 ABC transporter AbD4_00055 PF00664 ABC transporter transmembrane region AbD4_00058 PF01609 Transposase DDE domain AbD4_00060 PF13538 UvrD-like helicase C-terminal domain AbD4_00061 PF01797 Transposase IS200 like AbD4_00062 PF07282 Putative transposase DNA-binding domain AbD4_00062 PF01385 Probable transposase AbD4_00062 PF12323 Helix-turn-helix domain AbD4_00064 PF13007 Transposase C of IS166 homeodomain AbD4_00064 PF13817 IS66 C-terminal element AbD4_00064 PF03050 Transposase IS66 family AbD4_00064 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00068 PF01526 Tn3 transposase DDE domain AbD4_00068 PF13700 Domain of unknown function (DUF4158) AbD4_00069 PF02796 Helix-turn-helix domain of resolvase AbD4_00069 PF00239 Resolvase, N terminal domain AbD4_00070 PF00589 Phage integrase family AbD4_00070 PF13495 Phage integrase, N-terminal SAM-like domain AbD4_00071 PF13427 Domain of unknown function (DUF4111) AbD4_00072 PF00893 Small Multidrug Resistance protein AbD4_00073 PF00809 Pterin binding enzyme AbD4_00077 PF13610 DDE domain AbD4_00079 PF02583 Metal-sensitive transcriptional repressor AbD4_00080 PF16916 Dimerisation domain of Zinc Transporter AbD4_00080 PF01545 Cation efflux family AbD4_00081 PF13098 Thioredoxin-like domain AbD4_00081 PF10411 Disulfide bond isomerase protein N-terminus AbD4_00083 PF00156 Phosphoribosyl transferase domain AbD4_00085 PF01979 Amidohydrolase family AbD4_00086 PF00355 Rieske [2Fe-2S] domain AbD4_00087 PF03738 Glutathionylspermidine synthase preATP-grasp AbD4_00089 PF03741 Integral membrane protein TerC family AbD4_00090 PF01569 PAP2 superfamily AbD4_00092 PF08245 Mur ligase middle domain AbD4_00092 PF01225 Mur ligase family, catalytic domain AbD4_00092 PF02875 Mur ligase family, glutamate ligase domain AbD4_00094 PF00731 AIR carboxylase AbD4_00095 PF02222 ATP-grasp domain AbD4_00095 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AbD4_00096 PF13406 Transglycosylase SLT domain AbD4_00100 PF00012 Hsp70 protein AbD4_00101 PF01025 GrpE AbD4_00102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00102 PF03466 LysR substrate binding domain AbD4_00107 PF07859 alpha/beta hydrolase fold AbD4_00108 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AbD4_00118 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AbD4_00119 PF01252 Signal peptidase (SPase) II AbD4_00120 PF08264 Anticodon-binding domain of tRNA AbD4_00120 PF00133 tRNA synthetases class I (I, L, M and V) AbD4_00120 PF06827 Zinc finger found in FPG and IleRS AbD4_00121 PF01687 Riboflavin kinase AbD4_00121 PF06574 FAD synthetase AbD4_00123 PF01048 Phosphorylase superfamily AbD4_00124 PF08362 YcdC-like protein, C-terminal region AbD4_00124 PF00440 Bacterial regulatory proteins, tetR family AbD4_00125 PF00005 ABC transporter AbD4_00126 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_00127 PF00296 Luciferase-like monooxygenase AbD4_00128 PF09084 NMT1/THI5 like AbD4_00129 PF09084 NMT1/THI5 like AbD4_00130 PF00583 Acetyltransferase (GNAT) family AbD4_00130 PF00696 Amino acid kinase family AbD4_00133 PF00106 short chain dehydrogenase AbD4_00134 PF13419 Haloacid dehalogenase-like hydrolase AbD4_00136 PF01323 DSBA-like thioredoxin domain AbD4_00137 PF08360 QacR-like protein, C-terminal region AbD4_00137 PF00440 Bacterial regulatory proteins, tetR family AbD4_00138 PF00440 Bacterial regulatory proteins, tetR family AbD4_00139 PF00175 Oxidoreductase NAD-binding domain AbD4_00140 PF00487 Fatty acid desaturase AbD4_00141 PF01138 3' exoribonuclease family, domain 1 AbD4_00141 PF03725 3' exoribonuclease family, domain 2 AbD4_00142 PF04185 Phosphoesterase family AbD4_00142 PF05506 Domain of unknown function (DUF756) AbD4_00144 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AbD4_00144 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AbD4_00145 PF01510 N-acetylmuramoyl-L-alanine amidase AbD4_00146 PF03023 Lipid II flippase MurJ AbD4_00147 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AbD4_00147 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AbD4_00148 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AbD4_00148 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AbD4_00149 PF02706 Chain length determinant protein AbD4_00149 PF13807 G-rich domain on putative tyrosine kinase AbD4_00149 PF13614 AAA domain AbD4_00150 PF01451 Low molecular weight phosphotyrosine protein phosphatase AbD4_00151 PF02563 Polysaccharide biosynthesis/export protein AbD4_00151 PF10531 SLBB domain AbD4_00151 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AbD4_00152 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AbD4_00152 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AbD4_00152 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AbD4_00153 PF02719 Polysaccharide biosynthesis protein AbD4_00154 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AbD4_00155 PF02348 Cytidylyltransferase AbD4_00158 PF08666 SAF domain AbD4_00158 PF03102 NeuB family AbD4_00159 PF01943 Polysaccharide biosynthesis protein AbD4_00162 PF00535 Glycosyl transferase family 2 AbD4_00163 PF02397 Bacterial sugar transferase AbD4_00164 PF00483 Nucleotidyl transferase AbD4_00165 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AbD4_00165 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AbD4_00165 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AbD4_00166 PF00342 Phosphoglucose isomerase AbD4_00167 PF16363 GDP-mannose 4,6 dehydratase AbD4_00168 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AbD4_00168 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AbD4_00168 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AbD4_00168 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AbD4_00169 PF02652 L-lactate permease AbD4_00170 PF00392 Bacterial regulatory proteins, gntR family AbD4_00170 PF07729 FCD domain AbD4_00171 PF01070 FMN-dependent dehydrogenase AbD4_00172 PF01565 FAD binding domain AbD4_00172 PF09330 D-lactate dehydrogenase, membrane binding AbD4_00173 PF00155 Aminotransferase class I and II AbD4_00174 PF07729 FCD domain AbD4_00174 PF00392 Bacterial regulatory proteins, gntR family AbD4_00176 PF00285 Citrate synthase, C-terminal domain AbD4_00177 PF00330 Aconitase family (aconitate hydratase) AbD4_00177 PF00694 Aconitase C-terminal domain AbD4_00182 PF03050 Transposase IS66 family AbD4_00182 PF13817 IS66 C-terminal element AbD4_00182 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00182 PF13007 Transposase C of IS166 homeodomain AbD4_00189 PF02801 Beta-ketoacyl synthase, C-terminal domain AbD4_00189 PF00109 Beta-ketoacyl synthase, N-terminal domain AbD4_00191 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AbD4_00191 PF04717 Type VI secretion system, phage-baseplate injector AbD4_00191 PF13296 Putative type VI secretion system Rhs element Vgr AbD4_00200 PF00849 RNA pseudouridylate synthase AbD4_00203 PF07715 TonB-dependent Receptor Plug Domain AbD4_00203 PF00593 TonB dependent receptor AbD4_00205 PF01037 Lrp/AsnC ligand binding domain AbD4_00206 PF01266 FAD dependent oxidoreductase AbD4_00207 PF01168 Alanine racemase, N-terminal domain AbD4_00207 PF00842 Alanine racemase, C-terminal domain AbD4_00208 PF01042 Endoribonuclease L-PSP AbD4_00209 PF00324 Amino acid permease AbD4_00210 PF00324 Amino acid permease AbD4_00212 PF00171 Aldehyde dehydrogenase family AbD4_00213 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AbD4_00213 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AbD4_00214 PF13193 AMP-binding enzyme C-terminal domain AbD4_00214 PF00501 AMP-binding enzyme AbD4_00215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_00215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_00215 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_00216 PF00378 Enoyl-CoA hydratase/isomerase AbD4_00217 PF00378 Enoyl-CoA hydratase/isomerase AbD4_00218 PF07690 Major Facilitator Superfamily AbD4_00218 PF00083 Sugar (and other) transporter AbD4_00219 PF00765 Autoinducer synthase AbD4_00221 PF03472 Autoinducer binding domain AbD4_00221 PF00196 Bacterial regulatory proteins, luxR family AbD4_00222 PF00501 AMP-binding enzyme AbD4_00223 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_00223 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_00223 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_00224 PF16197 Ketoacyl-synthetase C-terminal extension AbD4_00224 PF02801 Beta-ketoacyl synthase, C-terminal domain AbD4_00224 PF08242 Methyltransferase domain AbD4_00224 PF00550 Phosphopantetheine attachment site AbD4_00224 PF14765 Polyketide synthase dehydratase AbD4_00224 PF00975 Thioesterase domain AbD4_00224 PF00109 Beta-ketoacyl synthase, N-terminal domain AbD4_00225 PF00975 Thioesterase domain AbD4_00225 PF00501 AMP-binding enzyme AbD4_00225 PF13193 AMP-binding enzyme C-terminal domain AbD4_00225 PF00668 Condensation domain AbD4_00225 PF00550 Phosphopantetheine attachment site AbD4_00228 PF16363 GDP-mannose 4,6 dehydratase AbD4_00229 PF01648 4'-phosphopantetheinyl transferase superfamily AbD4_00232 PF01722 BolA-like protein AbD4_00234 PF13614 AAA domain AbD4_00237 PF13817 IS66 C-terminal element AbD4_00237 PF03050 Transposase IS66 family AbD4_00237 PF13007 Transposase C of IS166 homeodomain AbD4_00237 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00240 PF09335 SNARE associated Golgi protein AbD4_00241 PF07681 DoxX AbD4_00242 PF04286 Protein of unknown function (DUF445) AbD4_00243 PF00117 Glutamine amidotransferase class-I AbD4_00243 PF02540 NAD synthase AbD4_00243 PF00958 GMP synthase C terminal domain AbD4_00244 PF01909 Nucleotidyltransferase domain AbD4_00244 PF13427 Domain of unknown function (DUF4111) AbD4_00245 PF03551 Transcriptional regulator PadR-like family AbD4_00247 PF02678 Pirin AbD4_00247 PF05726 Pirin C-terminal cupin domain AbD4_00251 PF00750 tRNA synthetases class I (R) AbD4_00251 PF05746 DALR anticodon binding domain AbD4_00251 PF03485 Arginyl tRNA synthetase N terminal domain AbD4_00252 PF03949 Malic enzyme, NAD binding domain AbD4_00252 PF00390 Malic enzyme, N-terminal domain AbD4_00253 PF04261 Dyp-type peroxidase family AbD4_00254 PF01810 LysE type translocator AbD4_00255 PF00950 ABC 3 transport family AbD4_00256 PF00005 ABC transporter AbD4_00260 PF00119 ATP synthase A chain AbD4_00261 PF00137 ATP synthase subunit C AbD4_00262 PF00430 ATP synthase B/B' CF(0) AbD4_00263 PF00213 ATP synthase delta (OSCP) subunit AbD4_00264 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AbD4_00264 PF00306 ATP synthase alpha/beta chain, C terminal domain AbD4_00264 PF02874 ATP synthase alpha/beta family, beta-barrel domain AbD4_00265 PF00231 ATP synthase AbD4_00266 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AbD4_00266 PF02874 ATP synthase alpha/beta family, beta-barrel domain AbD4_00267 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AbD4_00269 PF00255 Glutathione peroxidase AbD4_00271 PF07690 Major Facilitator Superfamily AbD4_00272 PF00440 Bacterial regulatory proteins, tetR family AbD4_00273 PF00892 EamA-like transporter family AbD4_00274 PF01300 Telomere recombination AbD4_00275 PF02481 DNA recombination-mediator protein A AbD4_00275 PF17782 DprA winged helix domain AbD4_00277 PF01327 Polypeptide deformylase AbD4_00282 PF00440 Bacterial regulatory proteins, tetR family AbD4_00289 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_00291 PF03358 NADPH-dependent FMN reductase AbD4_00295 PF11842 Domain of unknown function (DUF3362) AbD4_00295 PF04055 Radical SAM superfamily AbD4_00295 PF08497 Radical SAM N-terminal AbD4_00299 PF06123 Inner membrane protein CreD AbD4_00300 PF00672 HAMP domain AbD4_00300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00300 PF00512 His Kinase A (phospho-acceptor) domain AbD4_00301 PF00072 Response regulator receiver domain AbD4_00301 PF00486 Transcriptional regulatory protein, C terminal AbD4_00302 PF00817 impB/mucB/samB family AbD4_00302 PF11799 impB/mucB/samB family C-terminal domain AbD4_00302 PF11798 IMS family HHH motif AbD4_00304 PF07690 Major Facilitator Superfamily AbD4_00305 PF03641 Possible lysine decarboxylase AbD4_00306 PF03741 Integral membrane protein TerC family AbD4_00306 PF03471 Transporter associated domain AbD4_00307 PF02810 SEC-C motif AbD4_00308 PF03458 UPF0126 domain AbD4_00309 PF07690 Major Facilitator Superfamily AbD4_00310 PF03989 DNA gyrase C-terminal domain, beta-propeller AbD4_00310 PF00521 DNA gyrase/topoisomerase IV, subunit A AbD4_00311 PF00501 AMP-binding enzyme AbD4_00311 PF13193 AMP-binding enzyme C-terminal domain AbD4_00314 PF00719 Inorganic pyrophosphatase AbD4_00315 PF03573 outer membrane porin, OprD family AbD4_00317 PF00701 Dihydrodipicolinate synthetase family AbD4_00319 PF13610 DDE domain AbD4_00320 PF00497 Bacterial extracellular solute-binding proteins, family 3 AbD4_00321 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_00322 PF00005 ABC transporter AbD4_00323 PF01636 Phosphotransferase enzyme family AbD4_00324 PF13610 DDE domain AbD4_00327 PF00582 Universal stress protein family AbD4_00328 PF01740 STAS domain AbD4_00328 PF00916 Sulfate permease family AbD4_00330 PF01078 Magnesium chelatase, subunit ChlI AbD4_00330 PF13335 Magnesium chelatase, subunit ChlI C-terminal AbD4_00332 PF00543 Nitrogen regulatory protein P-II AbD4_00333 PF00909 Ammonium Transporter Family AbD4_00334 PF03477 ATP cone domain AbD4_00335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AbD4_00335 PF01872 RibD C-terminal domain AbD4_00337 PF00677 Lumazine binding domain AbD4_00341 PF02789 Cytosol aminopeptidase family, N-terminal domain AbD4_00341 PF00883 Cytosol aminopeptidase family, catalytic domain AbD4_00343 PF03739 Lipopolysaccharide export system permease LptF/LptG AbD4_00344 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AbD4_00344 PF01676 Metalloenzyme superfamily AbD4_00345 PF00595 PDZ domain AbD4_00345 PF03572 Peptidase family S41 AbD4_00346 PF02954 Bacterial regulatory protein, Fis family AbD4_00346 PF00072 Response regulator receiver domain AbD4_00346 PF00158 Sigma-54 interaction domain AbD4_00347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00347 PF00512 His Kinase A (phospho-acceptor) domain AbD4_00348 PF00196 Bacterial regulatory proteins, luxR family AbD4_00348 PF00072 Response regulator receiver domain AbD4_00349 PF00768 D-alanyl-D-alanine carboxypeptidase AbD4_00350 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_00351 PF03447 Homoserine dehydrogenase, NAD binding domain AbD4_00351 PF01842 ACT domain AbD4_00351 PF00742 Homoserine dehydrogenase AbD4_00352 PF10411 Disulfide bond isomerase protein N-terminus AbD4_00352 PF13098 Thioredoxin-like domain AbD4_00353 PF02899 Phage integrase, N-terminal SAM-like domain AbD4_00353 PF00589 Phage integrase family AbD4_00355 PF07664 Ferrous iron transport protein B C terminus AbD4_00355 PF02421 Ferrous iron transport protein B AbD4_00355 PF07670 Nucleoside recognition AbD4_00357 PF02875 Mur ligase family, glutamate ligase domain AbD4_00357 PF08245 Mur ligase middle domain AbD4_00358 PF01098 Cell cycle protein AbD4_00359 PF00749 tRNA synthetases class I (E and Q), catalytic domain AbD4_00360 PF01258 Prokaryotic dksA/traR C4-type zinc finger AbD4_00361 PF00149 Calcineurin-like phosphoesterase AbD4_00362 PF00293 NUDIX domain AbD4_00363 PF13667 ThiC-associated domain AbD4_00363 PF01964 Radical SAM ThiC family AbD4_00366 PF00892 EamA-like transporter family AbD4_00367 PF02321 Outer membrane efflux protein AbD4_00368 PF01895 PhoU domain AbD4_00369 PF04362 Bacterial Fe(2+) trafficking AbD4_00370 PF00206 Lyase AbD4_00370 PF14698 Argininosuccinate lyase C-terminal AbD4_00371 PF07694 5TMR of 5TMR-LYT AbD4_00371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00371 PF06580 Histidine kinase AbD4_00372 PF04397 LytTr DNA-binding domain AbD4_00372 PF00072 Response regulator receiver domain AbD4_00373 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AbD4_00373 PF03900 Porphobilinogen deaminase, C-terminal domain AbD4_00378 PF00816 H-NS histone family AbD4_00381 PF00263 Bacterial type II and III secretion system protein AbD4_00381 PF03958 Bacterial type II/III secretion system short domain AbD4_00382 PF12401 Protein of unknown function (DUF2662) AbD4_00382 PF00498 FHA domain AbD4_00383 PF13419 Haloacid dehalogenase-like hydrolase AbD4_00384 PF04715 Anthranilate synthase component I, N terminal region AbD4_00384 PF00425 chorismate binding enzyme AbD4_00389 PF00009 Elongation factor Tu GTP binding domain AbD4_00389 PF03143 Elongation factor Tu C-terminal domain AbD4_00389 PF03144 Elongation factor Tu domain 2 AbD4_00391 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AbD4_00392 PF00467 KOW motif AbD4_00392 PF02357 Transcription termination factor nusG AbD4_00393 PF03946 Ribosomal protein L11, N-terminal domain AbD4_00393 PF00298 Ribosomal protein L11, RNA binding domain AbD4_00394 PF00687 Ribosomal protein L1p/L10e family AbD4_00395 PF00466 Ribosomal protein L10 AbD4_00396 PF16320 Ribosomal protein L7/L12 dimerisation domain AbD4_00396 PF00542 Ribosomal protein L7/L12 C-terminal domain AbD4_00397 PF04560 RNA polymerase Rpb2, domain 7 AbD4_00397 PF04565 RNA polymerase Rpb2, domain 3 AbD4_00397 PF00562 RNA polymerase Rpb2, domain 6 AbD4_00397 PF04563 RNA polymerase beta subunit AbD4_00397 PF04561 RNA polymerase Rpb2, domain 2 AbD4_00397 PF10385 RNA polymerase beta subunit external 1 domain AbD4_00398 PF00623 RNA polymerase Rpb1, domain 2 AbD4_00398 PF04983 RNA polymerase Rpb1, domain 3 AbD4_00398 PF05000 RNA polymerase Rpb1, domain 4 AbD4_00398 PF04998 RNA polymerase Rpb1, domain 5 AbD4_00398 PF04997 RNA polymerase Rpb1, domain 1 AbD4_00403 PF03553 Na+/H+ antiporter family AbD4_00403 PF13726 Na+-H+ antiporter family AbD4_00406 PF00183 Hsp90 protein AbD4_00406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00409 PF01323 DSBA-like thioredoxin domain AbD4_00411 PF09278 MerR, DNA binding AbD4_00411 PF00376 MerR family regulatory protein AbD4_00415 PF02803 Thiolase, C-terminal domain AbD4_00415 PF00108 Thiolase, N-terminal domain AbD4_00416 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AbD4_00416 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AbD4_00416 PF00378 Enoyl-CoA hydratase/isomerase AbD4_00420 PF01541 GIY-YIG catalytic domain AbD4_00420 PF02151 UvrB/uvrC motif AbD4_00420 PF08459 UvrC Helix-hairpin-helix N-terminal AbD4_00422 PF01066 CDP-alcohol phosphatidyltransferase AbD4_00423 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AbD4_00423 PF12833 Helix-turn-helix domain AbD4_00423 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AbD4_00423 PF02805 Metal binding domain of Ada AbD4_00428 PF13533 Biotin-lipoyl like AbD4_00429 PF03652 Holliday junction resolvase AbD4_00430 PF02622 Uncharacterized ACR, COG1678 AbD4_00431 PF02463 RecF/RecN/SMC N terminal domain AbD4_00433 PF06865 Pyrimidine/purine nucleoside phosphorylase AbD4_00434 PF00588 SpoU rRNA Methylase family AbD4_00434 PF08032 RNA 2'-O ribose methyltransferase substrate binding AbD4_00436 PF01121 Dephospho-CoA kinase AbD4_00437 PF06750 Bacterial Peptidase A24 N-terminal domain AbD4_00437 PF01478 Type IV leader peptidase family AbD4_00438 PF00482 Type II secretion system (T2SS), protein F AbD4_00439 PF00437 Type II/IV secretion system protein AbD4_00439 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AbD4_00440 PF00121 Triosephosphate isomerase AbD4_00441 PF03840 Preprotein translocase SecG subunit AbD4_00445 PF17384 RimP C-terminal SH3 domain AbD4_00445 PF02576 RimP N-terminal domain AbD4_00446 PF08529 NusA N-terminal domain AbD4_00446 PF00575 S1 RNA binding domain AbD4_00446 PF13184 NusA-like KH domain AbD4_00447 PF04760 Translation initiation factor IF-2, N-terminal region AbD4_00447 PF11987 Translation-initiation factor 2 AbD4_00447 PF00009 Elongation factor Tu GTP binding domain AbD4_00447 PF08364 Bacterial translation initiation factor IF-2 associated region AbD4_00448 PF02033 Ribosome-binding factor A AbD4_00449 PF03334 Na+/H+ antiporter subunit AbD4_00450 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AbD4_00451 PF01899 Na+/H+ ion antiporter subunit AbD4_00452 PF00361 Proton-conducting membrane transporter AbD4_00453 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AbD4_00454 PF13244 Domain of unknown function (DUF4040) AbD4_00454 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AbD4_00454 PF00361 Proton-conducting membrane transporter AbD4_00454 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AbD4_00457 PF01502 Phosphoribosyl-AMP cyclohydrolase AbD4_00459 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AbD4_00460 PF01494 FAD binding domain AbD4_00461 PF03109 ABC1 family AbD4_00463 PF01209 ubiE/COQ5 methyltransferase family AbD4_00465 PF03976 Polyphosphate kinase 2 (PPK2) AbD4_00467 PF17946 RecC C-terminal domain AbD4_00468 PF12705 PD-(D/E)XK nuclease superfamily AbD4_00468 PF00580 UvrD/REP helicase N-terminal domain AbD4_00468 PF13361 UvrD-like helicase C-terminal domain AbD4_00469 PF13538 UvrD-like helicase C-terminal domain AbD4_00470 PF00144 Beta-lactamase AbD4_00471 PF00312 Ribosomal protein S15 AbD4_00472 PF00013 KH domain AbD4_00472 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AbD4_00472 PF03725 3' exoribonuclease family, domain 2 AbD4_00472 PF00575 S1 RNA binding domain AbD4_00472 PF01138 3' exoribonuclease family, domain 1 AbD4_00473 PF01544 CorA-like Mg2+ transporter protein AbD4_00475 PF01556 DnaJ C terminal domain AbD4_00475 PF00226 DnaJ domain AbD4_00477 PF01430 Hsp33 protein AbD4_00478 PF02254 TrkA-N domain AbD4_00478 PF00999 Sodium/hydrogen exchanger family AbD4_00479 PF17764 3′ DNA-binding domain (3′BD) AbD4_00479 PF18074 Primosomal protein N C-terminal domain AbD4_00479 PF00271 Helicase conserved C-terminal domain AbD4_00479 PF00270 DEAD/DEAH box helicase AbD4_00479 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AbD4_00480 PF00482 Type II secretion system (T2SS), protein F AbD4_00481 PF08334 Type II secretion system (T2SS), protein G AbD4_00481 PF07963 Prokaryotic N-terminal methylation motif AbD4_00483 PF01588 Putative tRNA binding domain AbD4_00484 PF00795 Carbon-nitrogen hydrolase AbD4_00485 PF03471 Transporter associated domain AbD4_00485 PF00571 CBS domain AbD4_00486 PF01206 Sulfurtransferase TusA AbD4_00490 PF01177 Asp/Glu/Hydantoin racemase AbD4_00492 PF00762 Ferrochelatase AbD4_00493 PF00753 Metallo-beta-lactamase superfamily AbD4_00494 PF03884 DNA gyrase inhibitor YacG AbD4_00496 PF13247 4Fe-4S dicluster domain AbD4_00496 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_00496 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AbD4_00498 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AbD4_00500 PF01197 Ribosomal protein L31 AbD4_00501 PF03109 ABC1 family AbD4_00502 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AbD4_00502 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_00503 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AbD4_00503 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_00503 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_00504 PF01554 MatE AbD4_00506 PF06969 HemN C-terminal domain AbD4_00506 PF04055 Radical SAM superfamily AbD4_00507 PF00106 short chain dehydrogenase AbD4_00508 PF03466 LysR substrate binding domain AbD4_00508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00511 PF13193 AMP-binding enzyme C-terminal domain AbD4_00511 PF00501 AMP-binding enzyme AbD4_00512 PF12111 Polyribonucleotide phosphorylase C terminal AbD4_00512 PF10150 Ribonuclease E/G family AbD4_00512 PF00575 S1 RNA binding domain AbD4_00514 PF00849 RNA pseudouridylate synthase AbD4_00514 PF01479 S4 domain AbD4_00515 PF13419 Haloacid dehalogenase-like hydrolase AbD4_00516 PF08279 HTH domain AbD4_00516 PF13280 WYL domain AbD4_00517 PF02798 Glutathione S-transferase, N-terminal domain AbD4_00519 PF03466 LysR substrate binding domain AbD4_00519 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00520 PF12706 Beta-lactamase superfamily domain AbD4_00521 PF00141 Peroxidase AbD4_00522 PF00391 PEP-utilising enzyme, mobile domain AbD4_00522 PF02896 PEP-utilising enzyme, TIM barrel domain AbD4_00522 PF05524 PEP-utilising enzyme, N-terminal AbD4_00522 PF01590 GAF domain AbD4_00523 PF00293 NUDIX domain AbD4_00525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00525 PF03466 LysR substrate binding domain AbD4_00527 PF00330 Aconitase family (aconitate hydratase) AbD4_00528 PF00694 Aconitase C-terminal domain AbD4_00530 PF00180 Isocitrate/isopropylmalate dehydrogenase AbD4_00533 PF01176 Translation initiation factor 1A / IF-1 AbD4_00535 PF01416 tRNA pseudouridine synthase AbD4_00539 PF02774 Semialdehyde dehydrogenase, dimerisation domain AbD4_00539 PF01118 Semialdehyde dehydrogenase, NAD binding domain AbD4_00541 PF00375 Sodium:dicarboxylate symporter family AbD4_00543 PF03279 Bacterial lipid A biosynthesis acyltransferase AbD4_00544 PF01810 LysE type translocator AbD4_00546 PF00005 ABC transporter AbD4_00546 PF16326 ABC transporter C-terminal domain AbD4_00546 PF12848 ABC transporter AbD4_00547 PF04102 SlyX AbD4_00548 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_00548 PF00107 Zinc-binding dehydrogenase AbD4_00549 PF01638 HxlR-like helix-turn-helix AbD4_00551 PF01131 DNA topoisomerase AbD4_00551 PF08272 Topoisomerase I zinc-ribbon-like AbD4_00551 PF01396 Topoisomerase DNA binding C4 zinc finger AbD4_00551 PF01751 Toprim domain AbD4_00554 PF13361 UvrD-like helicase C-terminal domain AbD4_00554 PF00580 UvrD/REP helicase N-terminal domain AbD4_00555 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AbD4_00559 PF00999 Sodium/hydrogen exchanger family AbD4_00559 PF02254 TrkA-N domain AbD4_00560 PF00471 Ribosomal protein L33 AbD4_00561 PF00830 Ribosomal L28 family AbD4_00562 PF00171 Aldehyde dehydrogenase family AbD4_00564 PF01842 ACT domain AbD4_00564 PF00551 Formyl transferase AbD4_00566 PF01618 MotA/TolQ/ExbB proton channel family AbD4_00568 PF01625 Peptide methionine sulfoxide reductase AbD4_00570 PF00186 Dihydrofolate reductase AbD4_00571 PF00303 Thymidylate synthase AbD4_00574 PF01790 Prolipoprotein diacylglyceryl transferase AbD4_00578 PF00902 Sec-independent protein translocase protein (TatC) AbD4_00579 PF02416 mttA/Hcf106 family AbD4_00580 PF02416 mttA/Hcf106 family AbD4_00582 PF01725 Ham1 family AbD4_00585 PF07021 Methionine biosynthesis protein MetW AbD4_00585 PF00561 alpha/beta hydrolase fold AbD4_00586 PF00561 alpha/beta hydrolase fold AbD4_00587 PF00682 HMGL-like AbD4_00587 PF08502 LeuA allosteric (dimerisation) domain AbD4_00588 PF18331 PKHD-type hydroxylase C-terminal domain AbD4_00588 PF13640 2OG-Fe(II) oxygenase superfamily AbD4_00589 PF07715 TonB-dependent Receptor Plug Domain AbD4_00589 PF00593 TonB dependent receptor AbD4_00590 PF05698 Bacterial trigger factor protein (TF) C-terminus AbD4_00590 PF05697 Bacterial trigger factor protein (TF) AbD4_00590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AbD4_00591 PF00574 Clp protease AbD4_00592 PF07724 AAA domain (Cdc48 subfamily) AbD4_00592 PF10431 C-terminal, D2-small domain, of ClpB protein AbD4_00592 PF06689 ClpX C4-type zinc finger AbD4_00595 PF05681 Fumarate hydratase (Fumerase) AbD4_00595 PF05683 Fumarase C-terminus AbD4_00596 PF07085 DRTGG domain AbD4_00596 PF01515 Phosphate acetyl/butaryl transferase AbD4_00597 PF00871 Acetokinase family AbD4_00598 PF00920 Dehydratase family AbD4_00599 PF01081 KDPG and KHG aldolase AbD4_00600 PF02447 GntP family permease AbD4_00601 PF01202 Shikimate kinase AbD4_00602 PF00171 Aldehyde dehydrogenase family AbD4_00603 PF00171 Aldehyde dehydrogenase family AbD4_00604 PF00561 alpha/beta hydrolase fold AbD4_00606 PF00933 Glycosyl hydrolase family 3 N terminal domain AbD4_00607 PF00595 PDZ domain AbD4_00607 PF03572 Peptidase family S41 AbD4_00607 PF17804 Tail specific protease N-terminal domain AbD4_00607 PF11818 C-terminal domain of tail specific protease (DUF3340) AbD4_00608 PF13439 Glycosyltransferase Family 4 AbD4_00608 PF00534 Glycosyl transferases group 1 AbD4_00609 PF01569 PAP2 superfamily AbD4_00610 PF04384 Iron-sulphur cluster assembly AbD4_00611 PF00334 Nucleoside diphosphate kinase AbD4_00612 PF04055 Radical SAM superfamily AbD4_00614 PF13464 Domain of unknown function (DUF4115) AbD4_00615 PF04551 GcpE protein AbD4_00616 PF03129 Anticodon binding domain AbD4_00616 PF13393 Histidyl-tRNA synthetase AbD4_00618 PF13360 PQQ-like domain AbD4_00619 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AbD4_00619 PF01926 50S ribosome-binding GTPase AbD4_00621 PF02556 Preprotein translocase subunit SecB AbD4_00622 PF00462 Glutaredoxin AbD4_00624 PF03193 RsgA GTPase AbD4_00625 PF00929 Exonuclease AbD4_00628 PF02321 Outer membrane efflux protein AbD4_00629 PF00005 ABC transporter AbD4_00629 PF02687 FtsX-like permease family AbD4_00629 PF12704 MacB-like periplasmic core domain AbD4_00630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_00631 PF13007 Transposase C of IS166 homeodomain AbD4_00631 PF03050 Transposase IS66 family AbD4_00631 PF13817 IS66 C-terminal element AbD4_00631 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00637 PF08264 Anticodon-binding domain of tRNA AbD4_00637 PF00133 tRNA synthetases class I (I, L, M and V) AbD4_00637 PF13603 Leucyl-tRNA synthetase, Domain 2 AbD4_00637 PF09334 tRNA synthetases class I (M) AbD4_00639 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AbD4_00639 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AbD4_00639 PF00205 Thiamine pyrophosphate enzyme, central domain AbD4_00640 PF10369 Small subunit of acetolactate synthase AbD4_00641 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AbD4_00641 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AbD4_00642 PF00563 EAL domain AbD4_00642 PF00990 Diguanylate cyclase, GGDEF domain AbD4_00642 PF03707 Bacterial signalling protein N terminal repeat AbD4_00647 PF13296 Putative type VI secretion system Rhs element Vgr AbD4_00647 PF04717 Type VI secretion system, phage-baseplate injector AbD4_00647 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AbD4_00652 PF03144 Elongation factor Tu domain 2 AbD4_00652 PF00009 Elongation factor Tu GTP binding domain AbD4_00652 PF16658 Class II release factor RF3, C-terminal domain AbD4_00655 PF01026 TatD related DNase AbD4_00656 PF00694 Aconitase C-terminal domain AbD4_00656 PF00330 Aconitase family (aconitate hydratase) AbD4_00658 PF00899 ThiF family AbD4_00660 PF03466 LysR substrate binding domain AbD4_00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00662 PF01207 Dihydrouridine synthase (Dus) AbD4_00663 PF00589 Phage integrase family AbD4_00669 PF03050 Transposase IS66 family AbD4_00669 PF13817 IS66 C-terminal element AbD4_00669 PF13007 Transposase C of IS166 homeodomain AbD4_00669 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00682 PF04945 YHS domain AbD4_00683 PF00512 His Kinase A (phospho-acceptor) domain AbD4_00683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00683 PF00672 HAMP domain AbD4_00686 PF13817 IS66 C-terminal element AbD4_00686 PF13007 Transposase C of IS166 homeodomain AbD4_00686 PF03050 Transposase IS66 family AbD4_00686 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00688 PF00486 Transcriptional regulatory protein, C terminal AbD4_00688 PF00072 Response regulator receiver domain AbD4_00690 PF07731 Multicopper oxidase AbD4_00690 PF00394 Multicopper oxidase AbD4_00690 PF07732 Multicopper oxidase AbD4_00692 PF13411 MerR HTH family regulatory protein AbD4_00693 PF01545 Cation efflux family AbD4_00695 PF02421 Ferrous iron transport protein B AbD4_00695 PF07670 Nucleoside recognition AbD4_00695 PF07664 Ferrous iron transport protein B C terminus AbD4_00698 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_00699 PF00873 AcrB/AcrD/AcrF family AbD4_00701 PF03960 ArsC family AbD4_00702 PF01022 Bacterial regulatory protein, arsR family AbD4_00704 PF01758 Sodium Bile acid symporter family AbD4_00707 PF13007 Transposase C of IS166 homeodomain AbD4_00707 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00707 PF03050 Transposase IS66 family AbD4_00707 PF13817 IS66 C-terminal element AbD4_00708 PF03358 NADPH-dependent FMN reductase AbD4_00711 PF07690 Major Facilitator Superfamily AbD4_00713 PF00892 EamA-like transporter family AbD4_00714 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AbD4_00714 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AbD4_00715 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AbD4_00716 PF02233 NAD(P) transhydrogenase beta subunit AbD4_00717 PF00106 short chain dehydrogenase AbD4_00719 PF01261 Xylose isomerase-like TIM barrel AbD4_00720 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AbD4_00720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AbD4_00721 PF00378 Enoyl-CoA hydratase/isomerase AbD4_00722 PF00072 Response regulator receiver domain AbD4_00722 PF01627 Hpt domain AbD4_00722 PF00512 His Kinase A (phospho-acceptor) domain AbD4_00722 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AbD4_00722 PF00672 HAMP domain AbD4_00722 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00723 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_00725 PF05958 tRNA (Uracil-5-)-methyltransferase AbD4_00726 PF02824 TGS domain AbD4_00726 PF04607 Region found in RelA / SpoT proteins AbD4_00726 PF13291 ACT domain AbD4_00728 PF03819 MazG nucleotide pyrophosphohydrolase domain AbD4_00730 PF01743 Poly A polymerase head domain AbD4_00730 PF12626 Polymerase A arginine-rich C-terminus AbD4_00730 PF12627 Probable RNA and SrmB- binding site of polymerase A AbD4_00731 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AbD4_00732 PF02548 Ketopantoate hydroxymethyltransferase AbD4_00733 PF02569 Pantoate-beta-alanine ligase AbD4_00734 PF03668 P-loop ATPase protein family AbD4_00735 PF00381 PTS HPr component phosphorylation site AbD4_00736 PF04751 Protein of unknown function (DUF615) AbD4_00737 PF00501 AMP-binding enzyme AbD4_00737 PF13193 AMP-binding enzyme C-terminal domain AbD4_00738 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AbD4_00738 PF03129 Anticodon binding domain AbD4_00738 PF02824 TGS domain AbD4_00738 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AbD4_00739 PF00707 Translation initiation factor IF-3, C-terminal domain AbD4_00739 PF05198 Translation initiation factor IF-3, N-terminal domain AbD4_00740 PF00043 Glutathione S-transferase, C-terminal domain AbD4_00740 PF02798 Glutathione S-transferase, N-terminal domain AbD4_00741 PF09335 SNARE associated Golgi protein AbD4_00742 PF07690 Major Facilitator Superfamily AbD4_00743 PF01632 Ribosomal protein L35 AbD4_00744 PF00453 Ribosomal protein L20 AbD4_00748 PF01409 tRNA synthetases class II core domain (F) AbD4_00748 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AbD4_00749 PF03483 B3/4 domain AbD4_00749 PF03484 tRNA synthetase B5 domain AbD4_00749 PF03147 Ferredoxin-fold anticodon binding domain AbD4_00749 PF01588 Putative tRNA binding domain AbD4_00749 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AbD4_00750 PF00216 Bacterial DNA-binding protein AbD4_00752 PF07497 Rho termination factor, RNA-binding domain AbD4_00752 PF07498 Rho termination factor, N-terminal domain AbD4_00752 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AbD4_00753 PF00085 Thioredoxin AbD4_00754 PF02541 Ppx/GppA phosphatase family AbD4_00755 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AbD4_00756 PF01171 PP-loop family AbD4_00756 PF09179 TilS substrate binding domain AbD4_00756 PF11734 TilS substrate C-terminal domain AbD4_00757 PF03807 NADP oxidoreductase coenzyme F420-dependent AbD4_00757 PF14748 Pyrroline-5-carboxylate reductase dimerisation AbD4_00758 PF02325 YGGT family AbD4_00759 PF01367 5'-3' exonuclease, C-terminal SAM fold AbD4_00759 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AbD4_00759 PF00476 DNA polymerase family A AbD4_00759 PF01612 3'-5' exonuclease AbD4_00763 PF00437 Type II/IV secretion system protein AbD4_00764 PF02566 OsmC-like protein AbD4_00765 PF01047 MarR family AbD4_00767 PF00795 Carbon-nitrogen hydrolase AbD4_00776 PF04552 Sigma-54, DNA binding domain AbD4_00776 PF00309 Sigma-54 factor, Activator interacting domain (AID) AbD4_00776 PF04963 Sigma-54 factor, core binding domain AbD4_00777 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AbD4_00778 PF01722 BolA-like protein AbD4_00779 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AbD4_00780 PF01634 ATP phosphoribosyltransferase AbD4_00781 PF00815 Histidinol dehydrogenase AbD4_00782 PF00155 Aminotransferase class I and II AbD4_00783 PF00425 chorismate binding enzyme AbD4_00783 PF04715 Anthranilate synthase component I, N terminal region AbD4_00791 PF00293 NUDIX domain AbD4_00792 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_00793 PF00814 Glycoprotease family AbD4_00794 PF04445 Putative SAM-dependent methyltransferase AbD4_00796 PF00756 Putative esterase AbD4_00798 PF00834 Ribulose-phosphate 3 epimerase family AbD4_00801 PF07732 Multicopper oxidase AbD4_00801 PF00394 Multicopper oxidase AbD4_00801 PF07731 Multicopper oxidase AbD4_00804 PF00893 Small Multidrug Resistance protein AbD4_00805 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AbD4_00805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AbD4_00806 PF01960 ArgJ family AbD4_00807 PF02445 Quinolinate synthetase A protein AbD4_00812 PF00962 Adenosine/AMP deaminase AbD4_00813 PF00107 Zinc-binding dehydrogenase AbD4_00813 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_00814 PF03466 LysR substrate binding domain AbD4_00814 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_00815 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_00815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_00816 PF07690 Major Facilitator Superfamily AbD4_00817 PF02515 CoA-transferase family III AbD4_00819 PF14537 Cytochrome c3 AbD4_00819 PF00890 FAD binding domain AbD4_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00820 PF03466 LysR substrate binding domain AbD4_00822 PF07690 Major Facilitator Superfamily AbD4_00823 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00823 PF03466 LysR substrate binding domain AbD4_00825 PF07687 Peptidase dimerisation domain AbD4_00825 PF01546 Peptidase family M20/M25/M40 AbD4_00826 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AbD4_00826 PF12833 Helix-turn-helix domain AbD4_00828 PF01810 LysE type translocator AbD4_00829 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00829 PF03466 LysR substrate binding domain AbD4_00831 PF08267 Cobalamin-independent synthase, N-terminal domain AbD4_00831 PF01717 Cobalamin-independent synthase, Catalytic domain AbD4_00832 PF01613 Flavin reductase like domain AbD4_00834 PF00440 Bacterial regulatory proteins, tetR family AbD4_00834 PF16925 Tetracyclin repressor-like, C-terminal domain AbD4_00836 PF17074 Darcynin, domain of unknown function AbD4_00838 PF02567 Phenazine biosynthesis-like protein AbD4_00839 PF03050 Transposase IS66 family AbD4_00839 PF13007 Transposase C of IS166 homeodomain AbD4_00839 PF13817 IS66 C-terminal element AbD4_00839 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00843 PF00268 Ribonucleotide reductase, small chain AbD4_00845 PF02867 Ribonucleotide reductase, barrel domain AbD4_00845 PF00317 Ribonucleotide reductase, all-alpha domain AbD4_00845 PF03477 ATP cone domain AbD4_00846 PF00072 Response regulator receiver domain AbD4_00846 PF00486 Transcriptional regulatory protein, C terminal AbD4_00847 PF00672 HAMP domain AbD4_00847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_00847 PF00512 His Kinase A (phospho-acceptor) domain AbD4_00849 PF17151 Periplasmic sensor domain AbD4_00849 PF00990 Diguanylate cyclase, GGDEF domain AbD4_00850 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AbD4_00851 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AbD4_00852 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AbD4_00852 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AbD4_00854 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AbD4_00854 PF10531 SLBB domain AbD4_00854 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AbD4_00855 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AbD4_00855 PF00384 Molybdopterin oxidoreductase AbD4_00855 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AbD4_00856 PF00146 NADH dehydrogenase AbD4_00857 PF12838 4Fe-4S dicluster domain AbD4_00858 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AbD4_00859 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AbD4_00860 PF00361 Proton-conducting membrane transporter AbD4_00860 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AbD4_00861 PF00361 Proton-conducting membrane transporter AbD4_00862 PF00361 Proton-conducting membrane transporter AbD4_00864 PF00313 'Cold-shock' DNA-binding domain AbD4_00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00865 PF03466 LysR substrate binding domain AbD4_00866 PF00970 Oxidoreductase FAD-binding domain AbD4_00866 PF00175 Oxidoreductase NAD-binding domain AbD4_00869 PF05552 Conserved TM helix AbD4_00872 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_00873 PF13533 Biotin-lipoyl like AbD4_00878 PF09334 tRNA synthetases class I (M) AbD4_00878 PF01588 Putative tRNA binding domain AbD4_00880 PF10609 NUBPL iron-transfer P-loop NTPase AbD4_00882 PF01048 Phosphorylase superfamily AbD4_00885 PF00692 dUTPase AbD4_00891 PF01207 Dihydrouridine synthase (Dus) AbD4_00893 PF02978 Signal peptide binding domain AbD4_00893 PF00448 SRP54-type protein, GTPase domain AbD4_00893 PF02881 SRP54-type protein, helical bundle domain AbD4_00894 PF03309 Type III pantothenate kinase AbD4_00896 PF01925 Sulfite exporter TauE/SafE AbD4_00898 PF06470 SMC proteins Flexible Hinge Domain AbD4_00898 PF02463 RecF/RecN/SMC N terminal domain AbD4_00900 PF00533 BRCA1 C Terminus (BRCT) domain AbD4_00900 PF01653 NAD-dependent DNA ligase adenylation domain AbD4_00900 PF03120 NAD-dependent DNA ligase OB-fold domain AbD4_00900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AbD4_00900 PF12826 Helix-hairpin-helix motif AbD4_00901 PF00210 Ferritin-like domain AbD4_00902 PF07690 Major Facilitator Superfamily AbD4_00903 PF00982 Glycosyltransferase family 20 AbD4_00904 PF02358 Trehalose-phosphatase AbD4_00905 PF08241 Methyltransferase domain AbD4_00905 PF12697 Alpha/beta hydrolase family AbD4_00906 PF00202 Aminotransferase class-III AbD4_00906 PF04055 Radical SAM superfamily AbD4_00906 PF06968 Biotin and Thiamin Synthesis associated domain AbD4_00907 PF00155 Aminotransferase class I and II AbD4_00910 PF00849 RNA pseudouridylate synthase AbD4_00910 PF01479 S4 domain AbD4_00911 PF04079 Segregation and condensation complex subunit ScpB AbD4_00912 PF02616 Segregation and condensation protein ScpA AbD4_00913 PF01300 Telomere recombination AbD4_00914 PF04315 Elongation factor P hydroxylase AbD4_00915 PF02620 Large ribosomal RNA subunit accumulation protein YceD AbD4_00916 PF01783 Ribosomal L32p protein family AbD4_00917 PF00698 Acyl transferase domain AbD4_00919 PF00550 Phosphopantetheine attachment site AbD4_00920 PF04972 BON domain AbD4_00920 PF01476 LysM domain AbD4_00921 PF02581 Thiamine monophosphate synthase AbD4_00921 PF03070 TENA/THI-4/PQQC family AbD4_00921 PF08543 Phosphomethylpyrimidine kinase AbD4_00923 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AbD4_00926 PF02261 Aspartate decarboxylase AbD4_00927 PF01195 Peptidyl-tRNA hydrolase AbD4_00928 PF01386 Ribosomal L25p family AbD4_00929 PF14572 Phosphoribosyl synthetase-associated domain AbD4_00929 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AbD4_00934 PF03550 Outer membrane lipoprotein LolB AbD4_00936 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AbD4_00936 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AbD4_00936 PF01488 Shikimate / quinate 5-dehydrogenase AbD4_00937 PF01807 CHC2 zinc finger AbD4_00937 PF08278 DNA primase DnaG DnaB-binding AbD4_00937 PF08275 DNA primase catalytic core, N-terminal domain AbD4_00937 PF10410 DnaB-helicase binding domain of primase AbD4_00938 PF13525 Outer membrane lipoprotein AbD4_00939 PF00849 RNA pseudouridylate synthase AbD4_00939 PF01479 S4 domain AbD4_00940 PF02578 Multi-copper polyphenol oxidoreductase laccase AbD4_00941 PF03358 NADPH-dependent FMN reductase AbD4_00942 PF01668 SmpB protein AbD4_00943 PF01467 Cytidylyltransferase-like AbD4_00944 PF00037 4Fe-4S binding domain AbD4_00947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_00947 PF03466 LysR substrate binding domain AbD4_00948 PF00180 Isocitrate/isopropylmalate dehydrogenase AbD4_00949 PF02028 BCCT, betaine/carnitine/choline family transporter AbD4_00950 PF07859 alpha/beta hydrolase fold AbD4_00951 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AbD4_00951 PF00355 Rieske [2Fe-2S] domain AbD4_00952 PF00171 Aldehyde dehydrogenase family AbD4_00953 PF00970 Oxidoreductase FAD-binding domain AbD4_00953 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_00953 PF00175 Oxidoreductase NAD-binding domain AbD4_00956 PF00795 Carbon-nitrogen hydrolase AbD4_00956 PF02540 NAD synthase AbD4_00958 PF02678 Pirin AbD4_00958 PF05726 Pirin C-terminal cupin domain AbD4_00959 PF03653 Uncharacterised protein family (UPF0093) AbD4_00960 PF02801 Beta-ketoacyl synthase, C-terminal domain AbD4_00960 PF00109 Beta-ketoacyl synthase, N-terminal domain AbD4_00962 PF00164 Ribosomal protein S12/S23 AbD4_00963 PF00177 Ribosomal protein S7p/S5e AbD4_00964 PF00679 Elongation factor G C-terminus AbD4_00964 PF14492 Elongation Factor G, domain II AbD4_00964 PF03764 Elongation factor G, domain IV AbD4_00964 PF00009 Elongation factor Tu GTP binding domain AbD4_00964 PF03144 Elongation factor Tu domain 2 AbD4_00965 PF03143 Elongation factor Tu C-terminal domain AbD4_00965 PF03144 Elongation factor Tu domain 2 AbD4_00965 PF00009 Elongation factor Tu GTP binding domain AbD4_00968 PF00583 Acetyltransferase (GNAT) family AbD4_00969 PF04377 Arginine-tRNA-protein transferase, C terminus AbD4_00969 PF04376 Arginine-tRNA-protein transferase, N terminus AbD4_00970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AbD4_00971 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_00972 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AbD4_00972 PF17854 FtsK alpha domain AbD4_00972 PF09397 Ftsk gamma domain AbD4_00972 PF01580 FtsK/SpoIIIE family AbD4_00973 PF01810 LysE type translocator AbD4_00977 PF13005 zinc-finger binding domain of transposase IS66 AbD4_00977 PF13817 IS66 C-terminal element AbD4_00977 PF03050 Transposase IS66 family AbD4_00977 PF13007 Transposase C of IS166 homeodomain AbD4_00979 PF03776 Septum formation topological specificity factor MinE AbD4_00980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AbD4_00981 PF03775 Septum formation inhibitor MinC, C-terminal domain AbD4_00983 PF01553 Acyltransferase AbD4_00984 PF13488 Glycine zipper AbD4_00984 PF00691 OmpA family AbD4_00985 PF00580 UvrD/REP helicase N-terminal domain AbD4_00985 PF13361 UvrD-like helicase C-terminal domain AbD4_00986 PF00692 dUTPase AbD4_00987 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AbD4_00987 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AbD4_00987 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AbD4_00987 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AbD4_00988 PF00696 Amino acid kinase family AbD4_00990 PF13230 Glutamine amidotransferases class-II AbD4_00991 PF01814 Hemerythrin HHE cation binding domain AbD4_00993 PF03658 RnfH family Ubiquitin AbD4_00994 PF04355 SmpA / OmlA family AbD4_00995 PF01475 Ferric uptake regulator family AbD4_00996 PF00437 Type II/IV secretion system protein AbD4_00997 PF00437 Type II/IV secretion system protein AbD4_00998 PF01168 Alanine racemase, N-terminal domain AbD4_01000 PF12320 Type 5 capsule protein repressor C-terminal domain AbD4_01000 PF00149 Calcineurin-like phosphoesterase AbD4_01004 PF08338 Domain of unknown function (DUF1731) AbD4_01004 PF01370 NAD dependent epimerase/dehydratase family AbD4_01005 PF01266 FAD dependent oxidoreductase AbD4_01006 PF00490 Delta-aminolevulinic acid dehydratase AbD4_01007 PF03061 Thioesterase superfamily AbD4_01008 PF13533 Biotin-lipoyl like AbD4_01009 PF07690 Major Facilitator Superfamily AbD4_01021 PF02384 N-6 DNA Methylase AbD4_01021 PF12161 HsdM N-terminal domain AbD4_01023 PF04851 Type III restriction enzyme, res subunit AbD4_01023 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AbD4_01023 PF08463 EcoEI R protein C-terminal AbD4_01023 PF00271 Helicase conserved C-terminal domain AbD4_01025 PF00083 Sugar (and other) transporter AbD4_01026 PF00701 Dihydrodipicolinate synthetase family AbD4_01028 PF04542 Sigma-70 region 2 AbD4_01028 PF08281 Sigma-70, region 4 AbD4_01030 PF07715 TonB-dependent Receptor Plug Domain AbD4_01030 PF00593 TonB dependent receptor AbD4_01032 PF04575 Protein of unknown function (DUF560) AbD4_01034 PF01126 Heme oxygenase AbD4_01039 PF13520 Amino acid permease AbD4_01040 PF02574 Homocysteine S-methyltransferase AbD4_01042 PF06039 Malate:quinone oxidoreductase (Mqo) AbD4_01043 PF00732 GMC oxidoreductase AbD4_01043 PF05199 GMC oxidoreductase AbD4_01044 PF00171 Aldehyde dehydrogenase family AbD4_01045 PF13977 BetI-type transcriptional repressor, C-terminal AbD4_01045 PF00440 Bacterial regulatory proteins, tetR family AbD4_01046 PF02028 BCCT, betaine/carnitine/choline family transporter AbD4_01047 PF02028 BCCT, betaine/carnitine/choline family transporter AbD4_01049 PF03061 Thioesterase superfamily AbD4_01051 PF02492 CobW/HypB/UreG, nucleotide-binding domain AbD4_01051 PF07683 Cobalamin synthesis protein cobW C-terminal domain AbD4_01052 PF00375 Sodium:dicarboxylate symporter family AbD4_01053 PF07152 YaeQ protein AbD4_01054 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AbD4_01055 PF14883 Hypothetical glycosyl hydrolase family 13 AbD4_01055 PF01522 Polysaccharide deacetylase AbD4_01056 PF00535 Glycosyl transferase family 2 AbD4_01058 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01061 PF09339 IclR helix-turn-helix domain AbD4_01061 PF01614 Bacterial transcriptional regulator AbD4_01062 PF00355 Rieske [2Fe-2S] domain AbD4_01064 PF00355 Rieske [2Fe-2S] domain AbD4_01066 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AbD4_01067 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01067 PF14759 Reductase C-terminal AbD4_01068 PF07690 Major Facilitator Superfamily AbD4_01070 PF12697 Alpha/beta hydrolase family AbD4_01072 PF03447 Homoserine dehydrogenase, NAD binding domain AbD4_01072 PF01958 Domain of unknown function DUF108 AbD4_01073 PF00171 Aldehyde dehydrogenase family AbD4_01074 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AbD4_01074 PF00205 Thiamine pyrophosphate enzyme, central domain AbD4_01074 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AbD4_01076 PF07690 Major Facilitator Superfamily AbD4_01077 PF01327 Polypeptide deformylase AbD4_01078 PF04960 Glutaminase AbD4_01079 PF02311 AraC-like ligand binding domain AbD4_01079 PF12833 Helix-turn-helix domain AbD4_01080 PF07690 Major Facilitator Superfamily AbD4_01081 PF01263 Aldose 1-epimerase AbD4_01083 PF03466 LysR substrate binding domain AbD4_01083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01085 PF07690 Major Facilitator Superfamily AbD4_01086 PF00456 Transketolase, thiamine diphosphate binding domain AbD4_01087 PF02780 Transketolase, C-terminal domain AbD4_01087 PF02779 Transketolase, pyrimidine binding domain AbD4_01088 PF02310 B12 binding domain AbD4_01088 PF02607 B12 binding domain AbD4_01088 PF02965 Vitamin B12 dependent methionine synthase, activation domain AbD4_01088 PF00809 Pterin binding enzyme AbD4_01088 PF02574 Homocysteine S-methyltransferase AbD4_01090 PF01384 Phosphate transporter family AbD4_01091 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_01094 PF03781 Sulfatase-modifying factor enzyme 1 AbD4_01095 PF00884 Sulfatase AbD4_01097 PF01521 Iron-sulphur cluster biosynthesis AbD4_01097 PF01106 NifU-like domain AbD4_01098 PF00593 TonB dependent receptor AbD4_01098 PF07715 TonB-dependent Receptor Plug Domain AbD4_01100 PF00561 alpha/beta hydrolase fold AbD4_01101 PF00484 Carbonic anhydrase AbD4_01102 PF13472 GDSL-like Lipase/Acylhydrolase family AbD4_01103 PF00005 ABC transporter AbD4_01105 PF01694 Rhomboid family AbD4_01106 PF00912 Transglycosylase AbD4_01107 PF02503 Polyphosphate kinase middle domain AbD4_01107 PF13090 Polyphosphate kinase C-terminal domain 2 AbD4_01107 PF17941 Polyphosphate kinase C-terminal domain 1 AbD4_01107 PF13089 Polyphosphate kinase N-terminal domain AbD4_01109 PF03466 LysR substrate binding domain AbD4_01109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01110 PF00561 alpha/beta hydrolase fold AbD4_01111 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01111 PF18113 Rubredoxin binding C-terminal domain AbD4_01112 PF00301 Rubredoxin AbD4_01115 PF00152 tRNA synthetases class II (D, K and N) AbD4_01115 PF01336 OB-fold nucleic acid binding domain AbD4_01116 PF14052 Capsule assembly protein Wzi AbD4_01117 PF01507 Phosphoadenosine phosphosulfate reductase family AbD4_01118 PF00009 Elongation factor Tu GTP binding domain AbD4_01122 PF03600 Citrate transporter AbD4_01123 PF03471 Transporter associated domain AbD4_01123 PF01595 Cyclin M transmembrane N-terminal domain AbD4_01123 PF00571 CBS domain AbD4_01124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01124 PF03466 LysR substrate binding domain AbD4_01125 PF00463 Isocitrate lyase family AbD4_01128 PF01774 UreD urease accessory protein AbD4_01129 PF00547 Urease, gamma subunit AbD4_01130 PF00699 Urease beta subunit AbD4_01131 PF00449 Urease alpha-subunit, N-terminal domain AbD4_01131 PF01979 Amidohydrolase family AbD4_01132 PF05194 UreE urease accessory protein, C-terminal domain AbD4_01132 PF02814 UreE urease accessory protein, N-terminal domain AbD4_01133 PF01730 UreF AbD4_01134 PF02492 CobW/HypB/UreG, nucleotide-binding domain AbD4_01137 PF03717 Penicillin-binding Protein dimerisation domain AbD4_01137 PF00905 Penicillin binding protein transpeptidase domain AbD4_01140 PF05191 Adenylate kinase, active site lid AbD4_01141 PF00633 Helix-hairpin-helix motif AbD4_01141 PF00730 HhH-GPD superfamily base excision DNA repair protein AbD4_01141 PF10576 Iron-sulfur binding domain of endonuclease III AbD4_01142 PF04060 Putative Fe-S cluster AbD4_01143 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AbD4_01143 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AbD4_01145 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AbD4_01146 PF02590 Predicted SPOUT methyltransferase AbD4_01147 PF02190 ATP-dependent protease La (LON) substrate-binding domain AbD4_01147 PF05362 Lon protease (S16) C-terminal proteolytic domain AbD4_01147 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_01149 PF01812 5-formyltetrahydrofolate cyclo-ligase family AbD4_01155 PF05195 Aminopeptidase P, N-terminal domain AbD4_01155 PF00557 Metallopeptidase family M24 AbD4_01156 PF01494 FAD binding domain AbD4_01157 PF01494 FAD binding domain AbD4_01159 PF13411 MerR HTH family regulatory protein AbD4_01161 PF01810 LysE type translocator AbD4_01162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01162 PF03466 LysR substrate binding domain AbD4_01164 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AbD4_01165 PF02021 Uncharacterised protein family UPF0102 AbD4_01166 PF04972 BON domain AbD4_01168 PF09297 NADH pyrophosphatase zinc ribbon domain AbD4_01168 PF00293 NUDIX domain AbD4_01170 PF00929 Exonuclease AbD4_01171 PF01464 Transglycosylase SLT domain AbD4_01171 PF01476 LysM domain AbD4_01171 PF01464 Transglycosylase SLT domain AbD4_01171 PF01476 LysM domain AbD4_01172 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AbD4_01173 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01174 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01174 PF12911 N-terminal TM domain of oligopeptide transport permease C AbD4_01175 PF00005 ABC transporter AbD4_01175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AbD4_01176 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AbD4_01176 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01177 PF00593 TonB dependent receptor AbD4_01177 PF07715 TonB-dependent Receptor Plug Domain AbD4_01179 PF00929 Exonuclease AbD4_01180 PF01979 Amidohydrolase family AbD4_01181 PF00563 EAL domain AbD4_01181 PF00990 Diguanylate cyclase, GGDEF domain AbD4_01181 PF01590 GAF domain AbD4_01181 PF00360 Phytochrome region AbD4_01184 PF03050 Transposase IS66 family AbD4_01184 PF13817 IS66 C-terminal element AbD4_01184 PF13007 Transposase C of IS166 homeodomain AbD4_01184 PF13005 zinc-finger binding domain of transposase IS66 AbD4_01185 PF00764 Arginosuccinate synthase AbD4_01187 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AbD4_01187 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01189 PF03180 NLPA lipoprotein AbD4_01191 PF13007 Transposase C of IS166 homeodomain AbD4_01191 PF13005 zinc-finger binding domain of transposase IS66 AbD4_01191 PF13817 IS66 C-terminal element AbD4_01191 PF03050 Transposase IS66 family AbD4_01195 PF00884 Sulfatase AbD4_01196 PF03781 Sulfatase-modifying factor enzyme 1 AbD4_01198 PF03466 LysR substrate binding domain AbD4_01198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01199 PF07690 Major Facilitator Superfamily AbD4_01202 PF00171 Aldehyde dehydrogenase family AbD4_01203 PF00465 Iron-containing alcohol dehydrogenase AbD4_01204 PF04444 Catechol dioxygenase N terminus AbD4_01204 PF00775 Dioxygenase AbD4_01207 PF01144 Coenzyme A transferase AbD4_01208 PF01144 Coenzyme A transferase AbD4_01209 PF00108 Thiolase, N-terminal domain AbD4_01209 PF02803 Thiolase, C-terminal domain AbD4_01212 PF03783 Curli production assembly/transport component CsgG AbD4_01214 PF05643 Putative bacterial lipoprotein (DUF799) AbD4_01216 PF00324 Amino acid permease AbD4_01217 PF01266 FAD dependent oxidoreductase AbD4_01218 PF00324 Amino acid permease AbD4_01220 PF07729 FCD domain AbD4_01220 PF00392 Bacterial regulatory proteins, gntR family AbD4_01222 PF00171 Aldehyde dehydrogenase family AbD4_01224 PF00202 Aminotransferase class-III AbD4_01225 PF04958 Arginine N-succinyltransferase beta subunit AbD4_01226 PF00324 Amino acid permease AbD4_01227 PF00171 Aldehyde dehydrogenase family AbD4_01228 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AbD4_01228 PF12833 Helix-turn-helix domain AbD4_01229 PF00892 EamA-like transporter family AbD4_01230 PF08666 SAF domain AbD4_01230 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AbD4_01231 PF07690 Major Facilitator Superfamily AbD4_01232 PF13378 Enolase C-terminal domain-like AbD4_01233 PF00701 Dihydrodipicolinate synthetase family AbD4_01234 PF00171 Aldehyde dehydrogenase family AbD4_01235 PF00392 Bacterial regulatory proteins, gntR family AbD4_01235 PF07729 FCD domain AbD4_01236 PF07519 Tannase and feruloyl esterase AbD4_01239 PF03573 outer membrane porin, OprD family AbD4_01240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01240 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01242 PF00171 Aldehyde dehydrogenase family AbD4_01243 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01244 PF07690 Major Facilitator Superfamily AbD4_01247 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_01247 PF00175 Oxidoreductase NAD-binding domain AbD4_01248 PF00355 Rieske [2Fe-2S] domain AbD4_01250 PF03781 Sulfatase-modifying factor enzyme 1 AbD4_01251 PF00884 Sulfatase AbD4_01252 PF07690 Major Facilitator Superfamily AbD4_01253 PF03573 outer membrane porin, OprD family AbD4_01254 PF05199 GMC oxidoreductase AbD4_01255 PF07859 alpha/beta hydrolase fold AbD4_01256 PF00106 short chain dehydrogenase AbD4_01257 PF00743 Flavin-binding monooxygenase-like AbD4_01258 PF12833 Helix-turn-helix domain AbD4_01258 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AbD4_01259 PF05683 Fumarase C-terminus AbD4_01260 PF05681 Fumarate hydratase (Fumerase) AbD4_01261 PF07690 Major Facilitator Superfamily AbD4_01262 PF03466 LysR substrate binding domain AbD4_01262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01263 PF04072 Leucine carboxyl methyltransferase AbD4_01264 PF00743 Flavin-binding monooxygenase-like AbD4_01265 PF00106 short chain dehydrogenase AbD4_01267 PF00440 Bacterial regulatory proteins, tetR family AbD4_01267 PF17932 Tetracyclin repressor-like, C-terminal domain AbD4_01268 PF17954 Quercetinase C-terminal cupin domain AbD4_01268 PF02678 Pirin AbD4_01270 PF00106 short chain dehydrogenase AbD4_01271 PF00743 Flavin-binding monooxygenase-like AbD4_01273 PF00860 Permease family AbD4_01274 PF00962 Adenosine/AMP deaminase AbD4_01275 PF01292 Prokaryotic cytochrome b561 AbD4_01277 PF01351 Ribonuclease HII AbD4_01278 PF02599 Global regulator protein family AbD4_01279 PF13840 ACT domain AbD4_01279 PF01842 ACT domain AbD4_01279 PF00696 Amino acid kinase family AbD4_01280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AbD4_01280 PF01411 tRNA synthetases class II (A) AbD4_01280 PF02272 DHHA1 domain AbD4_01281 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AbD4_01281 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AbD4_01282 PF13393 Histidyl-tRNA synthetase AbD4_01283 PF00709 Adenylosuccinate synthetase AbD4_01286 PF00248 Aldo/keto reductase family AbD4_01287 PF13545 Crp-like helix-turn-helix domain AbD4_01287 PF00027 Cyclic nucleotide-binding domain AbD4_01288 PF02566 OsmC-like protein AbD4_01291 PF10431 C-terminal, D2-small domain, of ClpB protein AbD4_01291 PF02861 Clp amino terminal domain, pathogenicity island component AbD4_01291 PF17871 AAA lid domain AbD4_01291 PF07724 AAA domain (Cdc48 subfamily) AbD4_01291 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_01294 PF10672 S-adenosylmethionine-dependent methyltransferase AbD4_01294 PF02926 THUMP domain AbD4_01294 PF01170 Putative RNA methylase family UPF0020 AbD4_01296 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AbD4_01296 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AbD4_01297 PF01979 Amidohydrolase family AbD4_01298 PF00691 OmpA family AbD4_01298 PF13488 Glycine zipper AbD4_01300 PF13417 Glutathione S-transferase, N-terminal domain AbD4_01300 PF00043 Glutathione S-transferase, C-terminal domain AbD4_01301 PF02390 Putative methyltransferase AbD4_01303 PF02798 Glutathione S-transferase, N-terminal domain AbD4_01303 PF00043 Glutathione S-transferase, C-terminal domain AbD4_01305 PF13192 Thioredoxin domain AbD4_01305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01309 PF00578 AhpC/TSA family AbD4_01309 PF10417 C-terminal domain of 1-Cys peroxiredoxin AbD4_01310 PF00270 DEAD/DEAH box helicase AbD4_01310 PF11898 Domain of unknown function (DUF3418) AbD4_01310 PF00271 Helicase conserved C-terminal domain AbD4_01310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AbD4_01310 PF04408 Helicase associated domain (HA2) AbD4_01311 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AbD4_01311 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AbD4_01313 PF07690 Major Facilitator Superfamily AbD4_01314 PF03594 Benzoate membrane transport protein AbD4_01315 PF00106 short chain dehydrogenase AbD4_01316 PF00175 Oxidoreductase NAD-binding domain AbD4_01316 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_01316 PF00970 Oxidoreductase FAD-binding domain AbD4_01317 PF00866 Ring hydroxylating beta subunit AbD4_01318 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AbD4_01318 PF00355 Rieske [2Fe-2S] domain AbD4_01319 PF03466 LysR substrate binding domain AbD4_01319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01321 PF00970 Oxidoreductase FAD-binding domain AbD4_01321 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_01321 PF00175 Oxidoreductase NAD-binding domain AbD4_01323 PF02332 Methane/Phenol/Toluene Hydroxylase AbD4_01323 PF04945 YHS domain AbD4_01324 PF02406 MmoB/DmpM family AbD4_01325 PF02332 Methane/Phenol/Toluene Hydroxylase AbD4_01326 PF06099 Phenol hydroxylase subunit AbD4_01327 PF02954 Bacterial regulatory protein, Fis family AbD4_01327 PF06505 Activator of aromatic catabolism AbD4_01327 PF02830 V4R domain AbD4_01327 PF00158 Sigma-54 interaction domain AbD4_01329 PF00403 Heavy-metal-associated domain AbD4_01330 PF09278 MerR, DNA binding AbD4_01330 PF00376 MerR family regulatory protein AbD4_01337 PF02601 Exonuclease VII, large subunit AbD4_01337 PF13742 OB-fold nucleic acid binding domain AbD4_01344 PF01810 LysE type translocator AbD4_01345 PF00313 'Cold-shock' DNA-binding domain AbD4_01347 PF03807 NADP oxidoreductase coenzyme F420-dependent AbD4_01347 PF14748 Pyrroline-5-carboxylate reductase dimerisation AbD4_01352 PF07690 Major Facilitator Superfamily AbD4_01353 PF01638 HxlR-like helix-turn-helix AbD4_01381 PF03592 Terminase small subunit AbD4_01381 PF10668 Phage terminase small subunit AbD4_01406 PF00589 Phage integrase family AbD4_01408 PF01406 tRNA synthetases class I (C) catalytic domain AbD4_01408 PF09190 DALR domain AbD4_01409 PF01380 SIS domain AbD4_01409 PF00571 CBS domain AbD4_01412 PF03968 OstA-like protein AbD4_01413 PF12399 Branched-chain amino acid ATP-binding cassette transporter AbD4_01413 PF00005 ABC transporter AbD4_01417 PF02321 Outer membrane efflux protein AbD4_01418 PF00664 ABC transporter transmembrane region AbD4_01418 PF00005 ABC transporter AbD4_01418 PF03412 Peptidase C39 family AbD4_01420 PF01205 Uncharacterized protein family UPF0029 AbD4_01421 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_01423 PF01596 O-methyltransferase AbD4_01426 PF11953 Domain of unknown function (DUF3470) AbD4_01426 PF00037 4Fe-4S binding domain AbD4_01428 PF00488 MutS domain V AbD4_01428 PF01624 MutS domain I AbD4_01428 PF05192 MutS domain III AbD4_01428 PF05188 MutS domain II AbD4_01428 PF05190 MutS family domain IV AbD4_01429 PF01037 Lrp/AsnC ligand binding domain AbD4_01430 PF00892 EamA-like transporter family AbD4_01432 PF03707 Bacterial signalling protein N terminal repeat AbD4_01432 PF00990 Diguanylate cyclase, GGDEF domain AbD4_01432 PF00563 EAL domain AbD4_01433 PF03279 Bacterial lipid A biosynthesis acyltransferase AbD4_01434 PF01544 CorA-like Mg2+ transporter protein AbD4_01437 PF07690 Major Facilitator Superfamily AbD4_01441 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AbD4_01441 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AbD4_01446 PF03466 LysR substrate binding domain AbD4_01446 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01447 PF01566 Natural resistance-associated macrophage protein AbD4_01448 PF03746 LamB/YcsF family AbD4_01449 PF07286 Protein of unknown function (DUF1445) AbD4_01451 PF02785 Biotin carboxylase C-terminal domain AbD4_01451 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AbD4_01451 PF00364 Biotin-requiring enzyme AbD4_01451 PF00289 Biotin carboxylase, N-terminal domain AbD4_01452 PF00654 Voltage gated chloride channel AbD4_01453 PF17287 POTRA domain AbD4_01453 PF08479 POTRA domain, ShlB-type AbD4_01453 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AbD4_01454 PF05860 haemagglutination activity domain AbD4_01454 PF13332 Hemagglutinin repeat AbD4_01454 PF04829 Pre-toxin domain with VENN motif AbD4_01454 PF13018 Extended Signal Peptide of Type V secretion system AbD4_01456 PF00440 Bacterial regulatory proteins, tetR family AbD4_01458 PF13823 Alcohol dehydrogenase GroES-associated AbD4_01458 PF00107 Zinc-binding dehydrogenase AbD4_01458 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_01461 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AbD4_01461 PF00289 Biotin carboxylase, N-terminal domain AbD4_01461 PF02785 Biotin carboxylase C-terminal domain AbD4_01462 PF02525 Flavodoxin-like fold AbD4_01463 PF01638 HxlR-like helix-turn-helix AbD4_01466 PF08753 NikR C terminal nickel binding domain AbD4_01466 PF01402 Ribbon-helix-helix protein, copG family AbD4_01467 PF01425 Amidase AbD4_01468 PF00497 Bacterial extracellular solute-binding proteins, family 3 AbD4_01469 PF00005 ABC transporter AbD4_01472 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AbD4_01472 PF04717 Type VI secretion system, phage-baseplate injector AbD4_01472 PF13296 Putative type VI secretion system Rhs element Vgr AbD4_01475 PF13007 Transposase C of IS166 homeodomain AbD4_01475 PF13817 IS66 C-terminal element AbD4_01475 PF13005 zinc-finger binding domain of transposase IS66 AbD4_01475 PF03050 Transposase IS66 family AbD4_01487 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AbD4_01490 PF05947 Type VI secretion system, TssF AbD4_01493 PF06744 Type VI secretion protein IcmF C-terminal AbD4_01493 PF14331 ImcF-related N-terminal domain AbD4_01493 PF06761 Intracellular multiplication and human macrophage-killing AbD4_01495 PF01389 OmpA-like transmembrane domain AbD4_01495 PF00691 OmpA family AbD4_01497 PF10431 C-terminal, D2-small domain, of ClpB protein AbD4_01497 PF17871 AAA lid domain AbD4_01497 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_01497 PF07724 AAA domain (Cdc48 subfamily) AbD4_01498 PF06812 ImpA, N-terminal, type VI secretion system AbD4_01499 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AbD4_01503 PF03466 LysR substrate binding domain AbD4_01503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AbD4_01506 PF07690 Major Facilitator Superfamily AbD4_01509 PF02677 Epoxyqueuosine reductase QueH AbD4_01511 PF09278 MerR, DNA binding AbD4_01511 PF00376 MerR family regulatory protein AbD4_01514 PF00701 Dihydrodipicolinate synthetase family AbD4_01516 PF00392 Bacterial regulatory proteins, gntR family AbD4_01517 PF05544 Proline racemase AbD4_01518 PF01266 FAD dependent oxidoreductase AbD4_01520 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01520 PF04324 BFD-like [2Fe-2S] binding domain AbD4_01522 PF00083 Sugar (and other) transporter AbD4_01523 PF00171 Aldehyde dehydrogenase family AbD4_01524 PF13520 Amino acid permease AbD4_01525 PF03313 Serine dehydratase alpha chain AbD4_01525 PF03315 Serine dehydratase beta chain AbD4_01526 PF01575 MaoC like domain AbD4_01526 PF00171 Aldehyde dehydrogenase family AbD4_01527 PF05138 Phenylacetic acid catabolic protein AbD4_01528 PF06243 Phenylacetic acid degradation B AbD4_01529 PF05138 Phenylacetic acid catabolic protein AbD4_01530 PF01883 Iron-sulfur cluster assembly protein AbD4_01531 PF00175 Oxidoreductase NAD-binding domain AbD4_01531 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_01531 PF00970 Oxidoreductase FAD-binding domain AbD4_01532 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01533 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01534 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AbD4_01534 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AbD4_01534 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AbD4_01535 PF00108 Thiolase, N-terminal domain AbD4_01535 PF02803 Thiolase, C-terminal domain AbD4_01536 PF14535 AMP-binding enzyme C-terminal domain AbD4_01536 PF00501 AMP-binding enzyme AbD4_01537 PF07848 PaaX-like protein AbD4_01537 PF08223 PaaX-like protein C-terminal domain AbD4_01538 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_01539 PF03061 Thioesterase superfamily AbD4_01541 PF04851 Type III restriction enzyme, res subunit AbD4_01541 PF17757 UvrB interaction domain AbD4_01541 PF12344 Ultra-violet resistance protein B AbD4_01541 PF02151 UvrB/uvrC motif AbD4_01541 PF00271 Helicase conserved C-terminal domain AbD4_01546 PF06719 AraC-type transcriptional regulator N-terminus AbD4_01546 PF12833 Helix-turn-helix domain AbD4_01549 PF02515 CoA-transferase family III AbD4_01550 PF00682 HMGL-like AbD4_01551 PF07690 Major Facilitator Superfamily AbD4_01552 PF00199 Catalase AbD4_01553 PF01292 Prokaryotic cytochrome b561 AbD4_01557 PF12697 Alpha/beta hydrolase family AbD4_01558 PF01613 Flavin reductase like domain AbD4_01559 PF00296 Luciferase-like monooxygenase AbD4_01560 PF00171 Aldehyde dehydrogenase family AbD4_01561 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AbD4_01563 PF00171 Aldehyde dehydrogenase family AbD4_01564 PF02627 Carboxymuconolactone decarboxylase family AbD4_01565 PF03466 LysR substrate binding domain AbD4_01565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01566 PF02525 Flavodoxin-like fold AbD4_01567 PF09339 IclR helix-turn-helix domain AbD4_01567 PF01614 Bacterial transcriptional regulator AbD4_01568 PF01494 FAD binding domain AbD4_01569 PF07702 UTRA domain AbD4_01569 PF00392 Bacterial regulatory proteins, gntR family AbD4_01571 PF00005 ABC transporter AbD4_01571 PF08402 TOBE domain AbD4_01572 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01573 PF01266 FAD dependent oxidoreductase AbD4_01574 PF00266 Aminotransferase class-V AbD4_01575 PF13419 Haloacid dehalogenase-like hydrolase AbD4_01576 PF07690 Major Facilitator Superfamily AbD4_01577 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01577 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01577 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01578 PF02515 CoA-transferase family III AbD4_01579 PF09339 IclR helix-turn-helix domain AbD4_01580 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01581 PF03060 Nitronate monooxygenase AbD4_01582 PF07690 Major Facilitator Superfamily AbD4_01583 PF09339 IclR helix-turn-helix domain AbD4_01584 PF00108 Thiolase, N-terminal domain AbD4_01584 PF02803 Thiolase, C-terminal domain AbD4_01585 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AbD4_01585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AbD4_01585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AbD4_01587 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01588 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01588 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01588 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01589 PF07690 Major Facilitator Superfamily AbD4_01590 PF01144 Coenzyme A transferase AbD4_01591 PF01144 Coenzyme A transferase AbD4_01593 PF07690 Major Facilitator Superfamily AbD4_01595 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01595 PF12806 Acetyl-CoA dehydrogenase C-terminal like AbD4_01595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01598 PF03466 LysR substrate binding domain AbD4_01598 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01599 PF00682 HMGL-like AbD4_01600 PF02785 Biotin carboxylase C-terminal domain AbD4_01600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AbD4_01600 PF00364 Biotin-requiring enzyme AbD4_01600 PF18140 Propionyl-coenzyme A carboxylase BT domain AbD4_01600 PF00289 Biotin carboxylase, N-terminal domain AbD4_01601 PF00378 Enoyl-CoA hydratase/isomerase AbD4_01602 PF01039 Carboxyl transferase domain AbD4_01603 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01603 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01603 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01604 PF00440 Bacterial regulatory proteins, tetR family AbD4_01605 PF00501 AMP-binding enzyme AbD4_01605 PF13193 AMP-binding enzyme C-terminal domain AbD4_01609 PF03466 LysR substrate binding domain AbD4_01609 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01616 PF18146 Damage-inducible protein CinA KH domain AbD4_01616 PF00994 Probable molybdopterin binding domain AbD4_01616 PF02464 Competence-damaged protein AbD4_01618 PF18011 C-terminal domain found in long catalases AbD4_01618 PF06628 Catalase-related immune-responsive AbD4_01618 PF00199 Catalase AbD4_01623 PF00717 Peptidase S24-like AbD4_01625 PF01037 Lrp/AsnC ligand binding domain AbD4_01625 PF13404 AsnC-type helix-turn-helix domain AbD4_01627 PF09308 LuxQ, periplasmic AbD4_01627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_01627 PF00072 Response regulator receiver domain AbD4_01627 PF00512 His Kinase A (phospho-acceptor) domain AbD4_01628 PF00072 Response regulator receiver domain AbD4_01629 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AbD4_01631 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01631 PF03466 LysR substrate binding domain AbD4_01632 PF07690 Major Facilitator Superfamily AbD4_01634 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01635 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01636 PF00005 ABC transporter AbD4_01637 PF00497 Bacterial extracellular solute-binding proteins, family 3 AbD4_01638 PF00497 Bacterial extracellular solute-binding proteins, family 3 AbD4_01639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01639 PF03466 LysR substrate binding domain AbD4_01640 PF01810 LysE type translocator AbD4_01641 PF00266 Aminotransferase class-V AbD4_01643 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_01644 PF00581 Rhodanese-like domain AbD4_01646 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01646 PF03466 LysR substrate binding domain AbD4_01647 PF02798 Glutathione S-transferase, N-terminal domain AbD4_01648 PF02798 Glutathione S-transferase, N-terminal domain AbD4_01648 PF14834 Glutathione S-transferase, C-terminal domain AbD4_01649 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01649 PF03466 LysR substrate binding domain AbD4_01650 PF03788 LrgA family AbD4_01651 PF04172 LrgB-like family AbD4_01652 PF00155 Aminotransferase class I and II AbD4_01652 PF00392 Bacterial regulatory proteins, gntR family AbD4_01656 PF00106 short chain dehydrogenase AbD4_01657 PF16957 Malonate decarboxylase, alpha subunit, transporter AbD4_01658 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AbD4_01659 PF06857 Malonate decarboxylase delta subunit (MdcD) AbD4_01660 PF01039 Carboxyl transferase domain AbD4_01662 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AbD4_01663 PF00698 Acyl transferase domain AbD4_01666 PF03466 LysR substrate binding domain AbD4_01666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01667 PF00392 Bacterial regulatory proteins, gntR family AbD4_01667 PF00155 Aminotransferase class I and II AbD4_01669 PF02322 Cytochrome bd terminal oxidase subunit II AbD4_01670 PF01654 Cytochrome bd terminal oxidase subunit I AbD4_01673 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01673 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01673 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01674 PF00296 Luciferase-like monooxygenase AbD4_01675 PF00083 Sugar (and other) transporter AbD4_01677 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AbD4_01678 PF00005 ABC transporter AbD4_01679 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01680 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AbD4_01681 PF01177 Asp/Glu/Hydantoin racemase AbD4_01682 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AbD4_01684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01684 PF03466 LysR substrate binding domain AbD4_01686 PF13382 Adenine deaminase C-terminal domain AbD4_01686 PF01979 Amidohydrolase family AbD4_01688 PF03960 ArsC family AbD4_01689 PF01022 Bacterial regulatory protein, arsR family AbD4_01690 PF01758 Sodium Bile acid symporter family AbD4_01691 PF03466 LysR substrate binding domain AbD4_01691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01694 PF13192 Thioredoxin domain AbD4_01694 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01697 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_01698 PF00588 SpoU rRNA Methylase family AbD4_01699 PF01336 OB-fold nucleic acid binding domain AbD4_01699 PF14579 Helix-hairpin-helix motif AbD4_01699 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AbD4_01699 PF07733 Bacterial DNA polymerase III alpha NTPase domain AbD4_01699 PF02811 PHP domain AbD4_01700 PF17763 Glutaminase/Asparaginase C-terminal domain AbD4_01700 PF00710 Asparaginase, N-terminal AbD4_01701 PF00375 Sodium:dicarboxylate symporter family AbD4_01702 PF00155 Aminotransferase class I and II AbD4_01703 PF01641 SelR domain AbD4_01704 PF00255 Glutathione peroxidase AbD4_01705 PF12833 Helix-turn-helix domain AbD4_01705 PF12852 Cupin AbD4_01707 PF03050 Transposase IS66 family AbD4_01707 PF13817 IS66 C-terminal element AbD4_01707 PF13007 Transposase C of IS166 homeodomain AbD4_01707 PF13005 zinc-finger binding domain of transposase IS66 AbD4_01710 PF00155 Aminotransferase class I and II AbD4_01711 PF01966 HD domain AbD4_01711 PF08335 GlnD PII-uridylyltransferase AbD4_01711 PF01909 Nucleotidyltransferase domain AbD4_01712 PF02222 ATP-grasp domain AbD4_01714 PF05437 Branched-chain amino acid transport protein (AzlD) AbD4_01715 PF03591 AzlC protein AbD4_01720 PF01926 50S ribosome-binding GTPase AbD4_01720 PF06071 Protein of unknown function (DUF933) AbD4_01721 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01722 PF09383 NIL domain AbD4_01722 PF00005 ABC transporter AbD4_01723 PF03180 NLPA lipoprotein AbD4_01724 PF03180 NLPA lipoprotein AbD4_01725 PF00296 Luciferase-like monooxygenase AbD4_01727 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01727 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01730 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01731 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01732 PF00005 ABC transporter AbD4_01734 PF01037 Lrp/AsnC ligand binding domain AbD4_01735 PF01709 Transcriptional regulator AbD4_01737 PF00440 Bacterial regulatory proteins, tetR family AbD4_01743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01743 PF03466 LysR substrate binding domain AbD4_01745 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AbD4_01747 PF00892 EamA-like transporter family AbD4_01751 PF13953 PapC C-terminal domain AbD4_01751 PF13954 PapC N-terminal domain AbD4_01751 PF00577 Outer membrane usher protein AbD4_01752 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AbD4_01752 PF02753 Pili assembly chaperone PapD, C-terminal domain AbD4_01753 PF16970 Type-1 fimbrial protein, A AbD4_01756 PF04055 Radical SAM superfamily AbD4_01756 PF06968 Biotin and Thiamin Synthesis associated domain AbD4_01757 PF08331 Domain of unknown function (DUF1730) AbD4_01758 PF01256 Carbohydrate kinase AbD4_01758 PF03853 YjeF-related protein N-terminus AbD4_01759 PF02075 Crossover junction endodeoxyribonuclease RuvC AbD4_01762 PF00905 Penicillin binding protein transpeptidase domain AbD4_01766 PF02773 S-adenosylmethionine synthetase, C-terminal domain AbD4_01766 PF02772 S-adenosylmethionine synthetase, central domain AbD4_01766 PF00438 S-adenosylmethionine synthetase, N-terminal domain AbD4_01767 PF02780 Transketolase, C-terminal domain AbD4_01767 PF02779 Transketolase, pyrimidine binding domain AbD4_01767 PF00456 Transketolase, thiamine diphosphate binding domain AbD4_01769 PF04264 YceI-like domain AbD4_01771 PF09992 Phosphodiester glycosidase AbD4_01773 PF05958 tRNA (Uracil-5-)-methyltransferase AbD4_01774 PF04229 GrpB protein AbD4_01775 PF00171 Aldehyde dehydrogenase family AbD4_01775 PF01619 Proline dehydrogenase AbD4_01775 PF14850 DNA-binding domain of Proline dehydrogenase AbD4_01775 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AbD4_01776 PF01037 Lrp/AsnC ligand binding domain AbD4_01777 PF00474 Sodium:solute symporter family AbD4_01778 PF02146 Sir2 family AbD4_01779 PF01597 Glycine cleavage H-protein AbD4_01780 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AbD4_01780 PF12833 Helix-turn-helix domain AbD4_01782 PF00664 ABC transporter transmembrane region AbD4_01782 PF00005 ABC transporter AbD4_01783 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AbD4_01784 PF06912 Protein of unknown function (DUF1275) AbD4_01785 PF00375 Sodium:dicarboxylate symporter family AbD4_01788 PF08007 Cupin superfamily protein AbD4_01789 PF02545 Maf-like protein AbD4_01791 PF00162 Phosphoglycerate kinase AbD4_01793 PF01116 Fructose-bisphosphate aldolase class-II AbD4_01794 PF00639 PPIC-type PPIASE domain AbD4_01794 PF09312 SurA N-terminal domain AbD4_01795 PF04453 LPS transport system D AbD4_01795 PF03968 OstA-like protein AbD4_01796 PF01636 Phosphotransferase enzyme family AbD4_01797 PF00483 Nucleotidyl transferase AbD4_01798 PF02527 rRNA small subunit methyltransferase G AbD4_01799 PF13614 AAA domain AbD4_01800 PF17762 HTH domain found in ParB protein AbD4_01800 PF02195 ParB-like nuclease domain AbD4_01801 PF01618 MotA/TolQ/ExbB proton channel family AbD4_01803 PF00664 ABC transporter transmembrane region AbD4_01803 PF00005 ABC transporter AbD4_01804 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AbD4_01805 PF02348 Cytidylyltransferase AbD4_01806 PF09115 DNA polymerase III, delta subunit, C terminal AbD4_01808 PF01026 TatD related DNase AbD4_01811 PF07963 Prokaryotic N-terminal methylation motif AbD4_01811 PF02501 Type II secretion system (T2SS), protein I AbD4_01812 PF11612 Type II secretion system (T2SS), protein J AbD4_01812 PF07963 Prokaryotic N-terminal methylation motif AbD4_01813 PF03934 Type II secretion system (T2SS), protein K AbD4_01815 PF03167 Uracil DNA glycosylase superfamily AbD4_01817 PF14437 MafB19-like deaminase AbD4_01819 PF02224 Cytidylate kinase AbD4_01820 PF00575 S1 RNA binding domain AbD4_01821 PF00216 Bacterial DNA-binding protein AbD4_01823 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AbD4_01825 PF00743 Flavin-binding monooxygenase-like AbD4_01827 PF03969 AFG1-like ATPase AbD4_01828 PF01274 Malate synthase AbD4_01829 PF02472 Biopolymer transport protein ExbD/TolR AbD4_01830 PF02472 Biopolymer transport protein ExbD/TolR AbD4_01831 PF01618 MotA/TolQ/ExbB proton channel family AbD4_01833 PF13817 IS66 C-terminal element AbD4_01833 PF03050 Transposase IS66 family AbD4_01833 PF13007 Transposase C of IS166 homeodomain AbD4_01833 PF13005 zinc-finger binding domain of transposase IS66 AbD4_01836 PF00593 TonB dependent receptor AbD4_01836 PF07715 TonB-dependent Receptor Plug Domain AbD4_01838 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AbD4_01841 PF01432 Peptidase family M3 AbD4_01842 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01843 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01844 PF00005 ABC transporter AbD4_01844 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AbD4_01847 PF00459 Inositol monophosphatase family AbD4_01849 PF01649 Ribosomal protein S20 AbD4_01850 PF13460 NAD(P)H-binding AbD4_01851 PF03737 Aldolase/RraA AbD4_01855 PF02559 CarD-like/TRCF domain AbD4_01855 PF00271 Helicase conserved C-terminal domain AbD4_01855 PF03461 TRCF domain AbD4_01855 PF17757 UvrB interaction domain AbD4_01855 PF00270 DEAD/DEAH box helicase AbD4_01857 PF00211 Adenylate and Guanylate cyclase catalytic domain AbD4_01858 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_01859 PF00012 Hsp70 protein AbD4_01860 PF07743 HSCB C-terminal oligomerisation domain AbD4_01860 PF00226 DnaJ domain AbD4_01861 PF01521 Iron-sulphur cluster biosynthesis AbD4_01862 PF01592 NifU-like N terminal domain AbD4_01863 PF00266 Aminotransferase class-V AbD4_01864 PF02082 Transcriptional regulator AbD4_01867 PF00216 Bacterial DNA-binding protein AbD4_01868 PF00639 PPIC-type PPIASE domain AbD4_01868 PF09312 SurA N-terminal domain AbD4_01869 PF12852 Cupin AbD4_01869 PF12833 Helix-turn-helix domain AbD4_01870 PF00487 Fatty acid desaturase AbD4_01871 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01871 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01871 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01872 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_01872 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_01872 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_01873 PF03109 ABC1 family AbD4_01875 PF04073 Aminoacyl-tRNA editing domain AbD4_01876 PF06276 Ferric iron reductase FhuF-like transporter AbD4_01876 PF04183 IucA / IucC family AbD4_01877 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AbD4_01878 PF07690 Major Facilitator Superfamily AbD4_01879 PF06276 Ferric iron reductase FhuF-like transporter AbD4_01879 PF04183 IucA / IucC family AbD4_01880 PF06276 Ferric iron reductase FhuF-like transporter AbD4_01880 PF04183 IucA / IucC family AbD4_01882 PF03737 Aldolase/RraA AbD4_01883 PF07715 TonB-dependent Receptor Plug Domain AbD4_01883 PF00593 TonB dependent receptor AbD4_01888 PF13419 Haloacid dehalogenase-like hydrolase AbD4_01890 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AbD4_01891 PF02277 Phosphoribosyltransferase AbD4_01892 PF00300 Histidine phosphatase superfamily (branch 1) AbD4_01894 PF02654 Cobalamin-5-phosphate synthase AbD4_01895 PF00793 DAHP synthetase I family AbD4_01896 PF01925 Sulfite exporter TauE/SafE AbD4_01900 PF07715 TonB-dependent Receptor Plug Domain AbD4_01900 PF00593 TonB dependent receptor AbD4_01901 PF02684 Lipid-A-disaccharide synthetase AbD4_01903 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_01904 PF00005 ABC transporter AbD4_01911 PF01230 HIT domain AbD4_01917 PF08241 Methyltransferase domain AbD4_01918 PF00561 alpha/beta hydrolase fold AbD4_01919 PF01053 Cys/Met metabolism PLP-dependent enzyme AbD4_01921 PF02575 YbaB/EbfC DNA-binding family AbD4_01922 PF13662 Toprim domain AbD4_01922 PF02132 RecR protein AbD4_01923 PF01612 3'-5' exonuclease AbD4_01923 PF00570 HRDC domain AbD4_01927 PF05166 YcgL domain AbD4_01929 PF17862 AAA+ lid domain AbD4_01929 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_01929 PF01434 Peptidase family M41 AbD4_01931 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_01932 PF05175 Methyltransferase small domain AbD4_01933 PF01264 Chorismate synthase AbD4_01934 PF08448 PAS fold AbD4_01934 PF00990 Diguanylate cyclase, GGDEF domain AbD4_01937 PF04055 Radical SAM superfamily AbD4_01938 PF00676 Dehydrogenase E1 component AbD4_01939 PF02779 Transketolase, pyrimidine binding domain AbD4_01939 PF02780 Transketolase, C-terminal domain AbD4_01940 PF00364 Biotin-requiring enzyme AbD4_01940 PF02817 e3 binding domain AbD4_01940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AbD4_01941 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_01941 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AbD4_01942 PF00106 short chain dehydrogenase AbD4_01943 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_01943 PF00107 Zinc-binding dehydrogenase AbD4_01944 PF01062 Bestrophin, RFP-TM, chloride channel AbD4_01945 PF00158 Sigma-54 interaction domain AbD4_01945 PF00072 Response regulator receiver domain AbD4_01945 PF02954 Bacterial regulatory protein, Fis family AbD4_01946 PF04273 Putative phosphatase (DUF442) AbD4_01946 PF00753 Metallo-beta-lactamase superfamily AbD4_01947 PF04273 Putative phosphatase (DUF442) AbD4_01947 PF00753 Metallo-beta-lactamase superfamily AbD4_01948 PF01925 Sulfite exporter TauE/SafE AbD4_01951 PF06445 GyrI-like small molecule binding domain AbD4_01951 PF12833 Helix-turn-helix domain AbD4_01952 PF01638 HxlR-like helix-turn-helix AbD4_01953 PF02525 Flavodoxin-like fold AbD4_01955 PF07702 UTRA domain AbD4_01955 PF00392 Bacterial regulatory proteins, gntR family AbD4_01958 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AbD4_01959 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01960 PF00005 ABC transporter AbD4_01963 PF00083 Sugar (and other) transporter AbD4_01964 PF07715 TonB-dependent Receptor Plug Domain AbD4_01964 PF00593 TonB dependent receptor AbD4_01965 PF10415 Fumarase C C-terminus AbD4_01965 PF00206 Lyase AbD4_01968 PF03466 LysR substrate binding domain AbD4_01968 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01969 PF03466 LysR substrate binding domain AbD4_01969 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01970 PF02803 Thiolase, C-terminal domain AbD4_01970 PF00108 Thiolase, N-terminal domain AbD4_01971 PF02667 Short chain fatty acid transporter AbD4_01972 PF01144 Coenzyme A transferase AbD4_01973 PF01144 Coenzyme A transferase AbD4_01974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01974 PF03466 LysR substrate binding domain AbD4_01978 PF00440 Bacterial regulatory proteins, tetR family AbD4_01982 PF06719 AraC-type transcriptional regulator N-terminus AbD4_01982 PF12833 Helix-turn-helix domain AbD4_01983 PF07690 Major Facilitator Superfamily AbD4_01984 PF01738 Dienelactone hydrolase family AbD4_01987 PF01613 Flavin reductase like domain AbD4_01989 PF14525 AraC-binding-like domain AbD4_01989 PF12833 Helix-turn-helix domain AbD4_01991 PF00175 Oxidoreductase NAD-binding domain AbD4_01991 PF00970 Oxidoreductase FAD-binding domain AbD4_01991 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_01992 PF00866 Ring hydroxylating beta subunit AbD4_01993 PF00355 Rieske [2Fe-2S] domain AbD4_01993 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AbD4_01994 PF03459 TOBE domain AbD4_01994 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_01996 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_01997 PF03459 TOBE domain AbD4_01997 PF00005 ABC transporter AbD4_01998 PF00106 short chain dehydrogenase AbD4_01999 PF00550 Phosphopantetheine attachment site AbD4_01999 PF00857 Isochorismatase family AbD4_02001 PF00149 Calcineurin-like phosphoesterase AbD4_02002 PF17941 Polyphosphate kinase C-terminal domain 1 AbD4_02002 PF13090 Polyphosphate kinase C-terminal domain 2 AbD4_02002 PF02503 Polyphosphate kinase middle domain AbD4_02002 PF13089 Polyphosphate kinase N-terminal domain AbD4_02003 PF12706 Beta-lactamase superfamily domain AbD4_02004 PF03070 TENA/THI-4/PQQC family AbD4_02005 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AbD4_02006 PF13186 Iron-sulfur cluster-binding domain AbD4_02006 PF04055 Radical SAM superfamily AbD4_02007 PF01244 Membrane dipeptidase (Peptidase family M19) AbD4_02011 PF13091 PLD-like domain AbD4_02014 PF00199 Catalase AbD4_02016 PF00107 Zinc-binding dehydrogenase AbD4_02016 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_02017 PF00419 Fimbrial protein AbD4_02018 PF00577 Outer membrane usher protein AbD4_02018 PF13954 PapC N-terminal domain AbD4_02018 PF13953 PapC C-terminal domain AbD4_02019 PF02753 Pili assembly chaperone PapD, C-terminal domain AbD4_02019 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AbD4_02020 PF16970 Type-1 fimbrial protein, A AbD4_02024 PF00296 Luciferase-like monooxygenase AbD4_02025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AbD4_02026 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02027 PF12911 N-terminal TM domain of oligopeptide transport permease C AbD4_02027 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02028 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AbD4_02028 PF00005 ABC transporter AbD4_02029 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02029 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_02029 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_02031 PF00664 ABC transporter transmembrane region AbD4_02031 PF00005 ABC transporter AbD4_02032 PF00664 ABC transporter transmembrane region AbD4_02032 PF00005 ABC transporter AbD4_02033 PF07715 TonB-dependent Receptor Plug Domain AbD4_02033 PF00593 TonB dependent receptor AbD4_02035 PF00296 Luciferase-like monooxygenase AbD4_02036 PF00158 Sigma-54 interaction domain AbD4_02037 PF00902 Sec-independent protein translocase protein (TatC) AbD4_02038 PF02416 mttA/Hcf106 family AbD4_02039 PF02416 mttA/Hcf106 family AbD4_02040 PF00005 ABC transporter AbD4_02041 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02043 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02044 PF09084 NMT1/THI5 like AbD4_02045 PF00296 Luciferase-like monooxygenase AbD4_02046 PF03544 Gram-negative bacterial TonB protein C-terminal AbD4_02047 PF01618 MotA/TolQ/ExbB proton channel family AbD4_02048 PF02472 Biopolymer transport protein ExbD/TolR AbD4_02049 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AbD4_02051 PF00593 TonB dependent receptor AbD4_02051 PF07715 TonB-dependent Receptor Plug Domain AbD4_02052 PF00296 Luciferase-like monooxygenase AbD4_02054 PF00005 ABC transporter AbD4_02054 PF17755 UvrA DNA-binding domain AbD4_02054 PF17760 UvrA interaction domain AbD4_02055 PF00873 AcrB/AcrD/AcrF family AbD4_02056 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_02056 PF00529 HlyD membrane-fusion protein of T1SS AbD4_02057 PF00072 Response regulator receiver domain AbD4_02057 PF00486 Transcriptional regulatory protein, C terminal AbD4_02058 PF00512 His Kinase A (phospho-acceptor) domain AbD4_02058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_02058 PF16527 Two-component sensor protein CpxA, periplasmic domain AbD4_02058 PF00672 HAMP domain AbD4_02060 PF02311 AraC-like ligand binding domain AbD4_02060 PF12833 Helix-turn-helix domain AbD4_02061 PF12146 Serine aminopeptidase, S33 AbD4_02066 PF13007 Transposase C of IS166 homeodomain AbD4_02066 PF03050 Transposase IS66 family AbD4_02066 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02066 PF13817 IS66 C-terminal element AbD4_02072 PF13291 ACT domain AbD4_02072 PF02824 TGS domain AbD4_02072 PF04607 Region found in RelA / SpoT proteins AbD4_02074 PF01975 Survival protein SurE AbD4_02079 PF07690 Major Facilitator Superfamily AbD4_02080 PF13533 Biotin-lipoyl like AbD4_02084 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AbD4_02085 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AbD4_02085 PF14572 Phosphoribosyl synthetase-associated domain AbD4_02089 PF00005 ABC transporter AbD4_02090 PF01032 FecCD transport family AbD4_02091 PF01032 FecCD transport family AbD4_02094 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_02094 PF00107 Zinc-binding dehydrogenase AbD4_02097 PF12833 Helix-turn-helix domain AbD4_02097 PF06719 AraC-type transcriptional regulator N-terminus AbD4_02098 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AbD4_02098 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AbD4_02099 PF07690 Major Facilitator Superfamily AbD4_02100 PF01370 NAD dependent epimerase/dehydratase family AbD4_02101 PF03466 LysR substrate binding domain AbD4_02101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02103 PF00920 Dehydratase family AbD4_02104 PF00171 Aldehyde dehydrogenase family AbD4_02107 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_02107 PF00529 HlyD membrane-fusion protein of T1SS AbD4_02109 PF07690 Major Facilitator Superfamily AbD4_02110 PF01557 Fumarylacetoacetate (FAA) hydrolase family AbD4_02111 PF13417 Glutathione S-transferase, N-terminal domain AbD4_02112 PF01494 FAD binding domain AbD4_02113 PF07883 Cupin domain AbD4_02114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02114 PF03466 LysR substrate binding domain AbD4_02117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02117 PF03466 LysR substrate binding domain AbD4_02119 PF08450 SMP-30/Gluconolactonase/LRE-like region AbD4_02120 PF00392 Bacterial regulatory proteins, gntR family AbD4_02120 PF07702 UTRA domain AbD4_02122 PF04909 Amidohydrolase AbD4_02123 PF07690 Major Facilitator Superfamily AbD4_02128 PF13360 PQQ-like domain AbD4_02129 PF01638 HxlR-like helix-turn-helix AbD4_02130 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_02130 PF00107 Zinc-binding dehydrogenase AbD4_02131 PF00043 Glutathione S-transferase, C-terminal domain AbD4_02131 PF02798 Glutathione S-transferase, N-terminal domain AbD4_02132 PF07681 DoxX AbD4_02133 PF02525 Flavodoxin-like fold AbD4_02134 PF03466 LysR substrate binding domain AbD4_02134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02136 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02136 PF13007 Transposase C of IS166 homeodomain AbD4_02136 PF13817 IS66 C-terminal element AbD4_02136 PF03050 Transposase IS66 family AbD4_02140 PF07690 Major Facilitator Superfamily AbD4_02143 PF13007 Transposase C of IS166 homeodomain AbD4_02143 PF03050 Transposase IS66 family AbD4_02143 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02143 PF13817 IS66 C-terminal element AbD4_02144 PF07690 Major Facilitator Superfamily AbD4_02149 PF08359 YsiA-like protein, C-terminal region AbD4_02149 PF00440 Bacterial regulatory proteins, tetR family AbD4_02150 PF12706 Beta-lactamase superfamily domain AbD4_02152 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02154 PF00376 MerR family regulatory protein AbD4_02154 PF09278 MerR, DNA binding AbD4_02155 PF01872 RibD C-terminal domain AbD4_02156 PF00106 short chain dehydrogenase AbD4_02157 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AbD4_02157 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02158 PF01047 MarR family AbD4_02159 PF07859 alpha/beta hydrolase fold AbD4_02163 PF06628 Catalase-related immune-responsive AbD4_02163 PF00199 Catalase AbD4_02164 PF00561 alpha/beta hydrolase fold AbD4_02166 PF00171 Aldehyde dehydrogenase family AbD4_02167 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_02167 PF00107 Zinc-binding dehydrogenase AbD4_02168 PF00474 Sodium:solute symporter family AbD4_02169 PF04341 Protein of unknown function, DUF485 AbD4_02170 PF00501 AMP-binding enzyme AbD4_02170 PF13193 AMP-binding enzyme C-terminal domain AbD4_02171 PF00158 Sigma-54 interaction domain AbD4_02171 PF06506 Propionate catabolism activator AbD4_02171 PF02954 Bacterial regulatory protein, Fis family AbD4_02173 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_02173 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02173 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_02176 PF01636 Phosphotransferase enzyme family AbD4_02177 PF00171 Aldehyde dehydrogenase family AbD4_02179 PF07690 Major Facilitator Superfamily AbD4_02180 PF00920 Dehydratase family AbD4_02181 PF07729 FCD domain AbD4_02181 PF00392 Bacterial regulatory proteins, gntR family AbD4_02183 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02183 PF03466 LysR substrate binding domain AbD4_02184 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AbD4_02184 PF13378 Enolase C-terminal domain-like AbD4_02185 PF02426 Muconolactone delta-isomerase AbD4_02186 PF04444 Catechol dioxygenase N terminus AbD4_02186 PF00775 Dioxygenase AbD4_02187 PF01144 Coenzyme A transferase AbD4_02188 PF01144 Coenzyme A transferase AbD4_02189 PF02803 Thiolase, C-terminal domain AbD4_02189 PF00108 Thiolase, N-terminal domain AbD4_02190 PF12146 Serine aminopeptidase, S33 AbD4_02191 PF00171 Aldehyde dehydrogenase family AbD4_02193 PF01179 Copper amine oxidase, enzyme domain AbD4_02193 PF07833 Copper amine oxidase N-terminal domain AbD4_02193 PF02727 Copper amine oxidase, N2 domain AbD4_02193 PF02728 Copper amine oxidase, N3 domain AbD4_02194 PF02311 AraC-like ligand binding domain AbD4_02194 PF12833 Helix-turn-helix domain AbD4_02195 PF01613 Flavin reductase like domain AbD4_02196 PF00175 Oxidoreductase NAD-binding domain AbD4_02196 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_02199 PF00355 Rieske [2Fe-2S] domain AbD4_02199 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AbD4_02202 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02203 PF01425 Amidase AbD4_02206 PF07690 Major Facilitator Superfamily AbD4_02208 PF00106 short chain dehydrogenase AbD4_02211 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_02211 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02211 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_02212 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02212 PF03466 LysR substrate binding domain AbD4_02213 PF09339 IclR helix-turn-helix domain AbD4_02213 PF01614 Bacterial transcriptional regulator AbD4_02214 PF00753 Metallo-beta-lactamase superfamily AbD4_02216 PF04143 Sulphur transport AbD4_02218 PF01011 PQQ enzyme repeat AbD4_02218 PF13360 PQQ-like domain AbD4_02219 PF04966 Carbohydrate-selective porin, OprB family AbD4_02220 PF05048 Periplasmic copper-binding protein (NosD) AbD4_02221 PF01487 Type I 3-dehydroquinase AbD4_02222 PF00775 Dioxygenase AbD4_02223 PF00775 Dioxygenase AbD4_02223 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AbD4_02224 PF02627 Carboxymuconolactone decarboxylase family AbD4_02225 PF07690 Major Facilitator Superfamily AbD4_02226 PF00561 alpha/beta hydrolase fold AbD4_02227 PF10397 Adenylosuccinate lyase C-terminus AbD4_02227 PF00206 Lyase AbD4_02228 PF02803 Thiolase, C-terminal domain AbD4_02228 PF00108 Thiolase, N-terminal domain AbD4_02229 PF01144 Coenzyme A transferase AbD4_02230 PF01144 Coenzyme A transferase AbD4_02231 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AbD4_02232 PF04977 Septum formation initiator AbD4_02233 PF04239 Protein of unknown function (DUF421) AbD4_02234 PF00113 Enolase, C-terminal TIM barrel domain AbD4_02234 PF03952 Enolase, N-terminal domain AbD4_02235 PF00793 DAHP synthetase I family AbD4_02236 PF06418 CTP synthase N-terminus AbD4_02236 PF00117 Glutamine amidotransferase class-I AbD4_02240 PF13007 Transposase C of IS166 homeodomain AbD4_02240 PF03050 Transposase IS66 family AbD4_02240 PF13817 IS66 C-terminal element AbD4_02240 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02249 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AbD4_02249 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02252 PF00793 DAHP synthetase I family AbD4_02253 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AbD4_02254 PF07724 AAA domain (Cdc48 subfamily) AbD4_02254 PF17871 AAA lid domain AbD4_02254 PF10431 C-terminal, D2-small domain, of ClpB protein AbD4_02254 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_02254 PF02861 Clp amino terminal domain, pathogenicity island component AbD4_02255 PF02617 ATP-dependent Clp protease adaptor protein ClpS AbD4_02257 PF01118 Semialdehyde dehydrogenase, NAD binding domain AbD4_02257 PF02774 Semialdehyde dehydrogenase, dimerisation domain AbD4_02260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AbD4_02261 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_02261 PF00585 C-terminal regulatory domain of Threonine dehydratase AbD4_02262 PF02254 TrkA-N domain AbD4_02262 PF02080 TrkA-C domain AbD4_02263 PF02386 Cation transport protein AbD4_02264 PF02253 Phospholipase A1 AbD4_02265 PF08367 Peptidase M16C associated AbD4_02265 PF00675 Insulinase (Peptidase family M16) AbD4_02265 PF05193 Peptidase M16 inactive domain AbD4_02266 PF07715 TonB-dependent Receptor Plug Domain AbD4_02266 PF00593 TonB dependent receptor AbD4_02267 PF00294 pfkB family carbohydrate kinase AbD4_02269 PF07290 Protein of unknown function (DUF1449) AbD4_02271 PF01654 Cytochrome bd terminal oxidase subunit I AbD4_02272 PF02322 Cytochrome bd terminal oxidase subunit II AbD4_02273 PF08173 Membrane bound YbgT-like protein AbD4_02275 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AbD4_02277 PF02881 SRP54-type protein, helical bundle domain AbD4_02277 PF00448 SRP54-type protein, GTPase domain AbD4_02282 PF00478 IMP dehydrogenase / GMP reductase domain AbD4_02282 PF00571 CBS domain AbD4_02283 PF00202 Aminotransferase class-III AbD4_02284 PF00462 Glutaredoxin AbD4_02286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02286 PF03466 LysR substrate binding domain AbD4_02287 PF00557 Metallopeptidase family M24 AbD4_02288 PF05525 Branched-chain amino acid transport protein AbD4_02293 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02293 PF13007 Transposase C of IS166 homeodomain AbD4_02293 PF13817 IS66 C-terminal element AbD4_02293 PF03050 Transposase IS66 family AbD4_02296 PF00391 PEP-utilising enzyme, mobile domain AbD4_02296 PF02896 PEP-utilising enzyme, TIM barrel domain AbD4_02296 PF00381 PTS HPr component phosphorylation site AbD4_02296 PF05524 PEP-utilising enzyme, N-terminal AbD4_02296 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AbD4_02297 PF00294 pfkB family carbohydrate kinase AbD4_02298 PF02378 Phosphotransferase system, EIIC AbD4_02298 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AbD4_02301 PF00990 Diguanylate cyclase, GGDEF domain AbD4_02301 PF00563 EAL domain AbD4_02301 PF03707 Bacterial signalling protein N terminal repeat AbD4_02303 PF07995 Glucose / Sorbosone dehydrogenase AbD4_02304 PF02586 SOS response associated peptidase (SRAP) AbD4_02305 PF01740 STAS domain AbD4_02305 PF00916 Sulfate permease family AbD4_02306 PF05922 Peptidase inhibitor I9 AbD4_02306 PF00082 Subtilase family AbD4_02308 PF00324 Amino acid permease AbD4_02309 PF00266 Aminotransferase class-V AbD4_02310 PF01037 Lrp/AsnC ligand binding domain AbD4_02315 PF13419 Haloacid dehalogenase-like hydrolase AbD4_02316 PF01479 S4 domain AbD4_02317 PF00154 recA bacterial DNA recombination protein AbD4_02318 PF02631 RecX family AbD4_02320 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_02320 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AbD4_02321 PF07977 FabA-like domain AbD4_02322 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_02322 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AbD4_02324 PF07244 Surface antigen variable number repeat AbD4_02324 PF01103 Surface antigen AbD4_02325 PF17820 PDZ domain AbD4_02325 PF13180 PDZ domain AbD4_02325 PF02163 Peptidase family M50 AbD4_02326 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AbD4_02326 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AbD4_02326 PF13288 DXP reductoisomerase C-terminal domain AbD4_02328 PF01255 Putative undecaprenyl diphosphate synthase AbD4_02329 PF01765 Ribosome recycling factor AbD4_02330 PF00696 Amino acid kinase family AbD4_02331 PF04055 Radical SAM superfamily AbD4_02331 PF18693 TRAM domain AbD4_02331 PF00919 Uncharacterized protein family UPF0004 AbD4_02332 PF00989 PAS fold AbD4_02332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_02332 PF00512 His Kinase A (phospho-acceptor) domain AbD4_02333 PF02954 Bacterial regulatory protein, Fis family AbD4_02333 PF00072 Response regulator receiver domain AbD4_02333 PF00158 Sigma-54 interaction domain AbD4_02334 PF00440 Bacterial regulatory proteins, tetR family AbD4_02335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AbD4_02335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AbD4_02337 PF02542 YgbB family AbD4_02339 PF01266 FAD dependent oxidoreductase AbD4_02343 PF10415 Fumarase C C-terminus AbD4_02343 PF00206 Lyase AbD4_02344 PF16363 GDP-mannose 4,6 dehydratase AbD4_02345 PF02635 DsrE/DsrF-like family AbD4_02349 PF00892 EamA-like transporter family AbD4_02350 PF00392 Bacterial regulatory proteins, gntR family AbD4_02350 PF00155 Aminotransferase class I and II AbD4_02351 PF01638 HxlR-like helix-turn-helix AbD4_02352 PF00994 Probable molybdopterin binding domain AbD4_02352 PF03453 MoeA N-terminal region (domain I and II) AbD4_02352 PF03454 MoeA C-terminal region (domain IV) AbD4_02353 PF01967 MoaC family AbD4_02353 PF00994 Probable molybdopterin binding domain AbD4_02354 PF02391 MoaE protein AbD4_02356 PF06463 Molybdenum Cofactor Synthesis C AbD4_02356 PF04055 Radical SAM superfamily AbD4_02357 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AbD4_02357 PF00384 Molybdopterin oxidoreductase AbD4_02357 PF01568 Molydopterin dinucleotide binding domain AbD4_02358 PF12804 MobA-like NTP transferase domain AbD4_02359 PF01568 Molydopterin dinucleotide binding domain AbD4_02359 PF04324 BFD-like [2Fe-2S] binding domain AbD4_02359 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AbD4_02359 PF00384 Molybdopterin oxidoreductase AbD4_02360 PF04324 BFD-like [2Fe-2S] binding domain AbD4_02360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AbD4_02360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AbD4_02360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02360 PF18267 Rubredoxin NAD+ reductase C-terminal domain AbD4_02361 PF04324 BFD-like [2Fe-2S] binding domain AbD4_02361 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AbD4_02361 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AbD4_02361 PF13806 Rieske-like [2Fe-2S] domain AbD4_02361 PF18267 Rubredoxin NAD+ reductase C-terminal domain AbD4_02361 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02363 PF00072 Response regulator receiver domain AbD4_02363 PF00486 Transcriptional regulatory protein, C terminal AbD4_02364 PF00005 ABC transporter AbD4_02365 PF13438 Domain of unknown function (DUF4113) AbD4_02365 PF00817 impB/mucB/samB family AbD4_02365 PF11799 impB/mucB/samB family C-terminal domain AbD4_02366 PF01220 Dehydroquinase class II AbD4_02367 PF00364 Biotin-requiring enzyme AbD4_02368 PF02785 Biotin carboxylase C-terminal domain AbD4_02368 PF00289 Biotin carboxylase, N-terminal domain AbD4_02368 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AbD4_02370 PF12832 MFS_1 like family AbD4_02385 PF05154 TM2 domain AbD4_02400 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) AbD4_02404 PF06381 Protein of unknown function (DUF1073) AbD4_02421 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT AbD4_02422 PF01726 LexA DNA binding domain AbD4_02422 PF00717 Peptidase S24-like AbD4_02438 PF01645 Conserved region in glutamate synthase AbD4_02441 PF01565 FAD binding domain AbD4_02441 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AbD4_02442 PF01451 Low molecular weight phosphotyrosine protein phosphatase AbD4_02444 PF00465 Iron-containing alcohol dehydrogenase AbD4_02445 PF03061 Thioesterase superfamily AbD4_02446 PF04185 Phosphoesterase family AbD4_02446 PF05506 Domain of unknown function (DUF756) AbD4_02447 PF12169 DNA polymerase III subunits gamma and tau domain III AbD4_02447 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AbD4_02447 PF12170 DNA polymerase III tau subunit V interacting with alpha AbD4_02450 PF07690 Major Facilitator Superfamily AbD4_02452 PF00144 Beta-lactamase AbD4_02453 PF01575 MaoC like domain AbD4_02455 PF02803 Thiolase, C-terminal domain AbD4_02455 PF00108 Thiolase, N-terminal domain AbD4_02457 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02457 PF03466 LysR substrate binding domain AbD4_02458 PF00923 Transaldolase/Fructose-6-phosphate aldolase AbD4_02459 PF01810 LysE type translocator AbD4_02460 PF01037 Lrp/AsnC ligand binding domain AbD4_02461 PF03594 Benzoate membrane transport protein AbD4_02462 PF02308 MgtC family AbD4_02463 PF00689 Cation transporting ATPase, C-terminus AbD4_02463 PF00690 Cation transporter/ATPase, N-terminus AbD4_02467 PF00582 Universal stress protein family AbD4_02468 PF12848 ABC transporter AbD4_02468 PF00005 ABC transporter AbD4_02473 PF07715 TonB-dependent Receptor Plug Domain AbD4_02473 PF00593 TonB dependent receptor AbD4_02479 PF00924 Mechanosensitive ion channel AbD4_02480 PF07715 TonB-dependent Receptor Plug Domain AbD4_02480 PF00593 TonB dependent receptor AbD4_02486 PF01494 FAD binding domain AbD4_02487 PF03466 LysR substrate binding domain AbD4_02487 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02488 PF07690 Major Facilitator Superfamily AbD4_02489 PF07690 Major Facilitator Superfamily AbD4_02490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02490 PF14759 Reductase C-terminal AbD4_02491 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AbD4_02492 PF00106 short chain dehydrogenase AbD4_02493 PF00355 Rieske [2Fe-2S] domain AbD4_02494 PF00866 Ring hydroxylating beta subunit AbD4_02495 PF00355 Rieske [2Fe-2S] domain AbD4_02495 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AbD4_02496 PF03466 LysR substrate binding domain AbD4_02496 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02497 PF00561 alpha/beta hydrolase fold AbD4_02498 PF03573 outer membrane porin, OprD family AbD4_02499 PF07836 DmpG-like communication domain AbD4_02499 PF00682 HMGL-like AbD4_02500 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AbD4_02500 PF01118 Semialdehyde dehydrogenase, NAD binding domain AbD4_02501 PF01557 Fumarylacetoacetate (FAA) hydrolase family AbD4_02503 PF07690 Major Facilitator Superfamily AbD4_02504 PF12706 Beta-lactamase superfamily domain AbD4_02508 PF13817 IS66 C-terminal element AbD4_02508 PF03050 Transposase IS66 family AbD4_02508 PF13007 Transposase C of IS166 homeodomain AbD4_02508 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02510 PF02656 Domain of unknown function (DUF202) AbD4_02514 PF00005 ABC transporter AbD4_02514 PF03412 Peptidase C39 family AbD4_02514 PF00664 ABC transporter transmembrane region AbD4_02515 PF13817 IS66 C-terminal element AbD4_02515 PF13007 Transposase C of IS166 homeodomain AbD4_02515 PF03050 Transposase IS66 family AbD4_02515 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02520 PF03050 Transposase IS66 family AbD4_02520 PF13007 Transposase C of IS166 homeodomain AbD4_02520 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02520 PF13817 IS66 C-terminal element AbD4_02521 PF02321 Outer membrane efflux protein AbD4_02523 PF00691 OmpA family AbD4_02523 PF01389 OmpA-like transmembrane domain AbD4_02527 PF01389 OmpA-like transmembrane domain AbD4_02527 PF00691 OmpA family AbD4_02528 PF05658 Head domain of trimeric autotransporter adhesin AbD4_02528 PF05662 Coiled stalk of trimeric autotransporter adhesin AbD4_02528 PF03895 YadA-like membrane anchor domain AbD4_02528 PF13018 Extended Signal Peptide of Type V secretion system AbD4_02531 PF01037 Lrp/AsnC ligand binding domain AbD4_02532 PF01817 Chorismate mutase type II AbD4_02536 PF11940 Domain of unknown function (DUF3458) Ig-like fold AbD4_02536 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AbD4_02536 PF01433 Peptidase family M1 domain AbD4_02539 PF02110 Hydroxyethylthiazole kinase family AbD4_02540 PF06445 GyrI-like small molecule binding domain AbD4_02542 PF14493 Helix-turn-helix domain AbD4_02542 PF05970 PIF1-like helicase AbD4_02543 PF00465 Iron-containing alcohol dehydrogenase AbD4_02546 PF00171 Aldehyde dehydrogenase family AbD4_02547 PF13520 Amino acid permease AbD4_02548 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AbD4_02549 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AbD4_02550 PF00117 Glutamine amidotransferase class-I AbD4_02550 PF00958 GMP synthase C terminal domain AbD4_02550 PF02540 NAD synthase AbD4_02551 PF00749 tRNA synthetases class I (E and Q), catalytic domain AbD4_02551 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AbD4_02552 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AbD4_02553 PF00149 Calcineurin-like phosphoesterase AbD4_02555 PF00881 Nitroreductase family AbD4_02557 PF17209 Hfq protein AbD4_02559 PF01119 DNA mismatch repair protein, C-terminal domain AbD4_02559 PF08676 MutL C terminal dimerisation domain AbD4_02560 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AbD4_02561 PF00849 RNA pseudouridylate synthase AbD4_02561 PF01479 S4 domain AbD4_02564 PF01479 S4 domain AbD4_02564 PF00849 RNA pseudouridylate synthase AbD4_02566 PF04284 Protein of unknown function (DUF441) AbD4_02567 PF03466 LysR substrate binding domain AbD4_02567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02570 PF07690 Major Facilitator Superfamily AbD4_02571 PF00027 Cyclic nucleotide-binding domain AbD4_02571 PF00520 Ion transport protein AbD4_02573 PF00330 Aconitase family (aconitate hydratase) AbD4_02573 PF11791 Aconitate B N-terminal domain AbD4_02573 PF06434 Aconitate hydratase 2 N-terminus AbD4_02577 PF01103 Surface antigen AbD4_02577 PF07244 Surface antigen variable number repeat AbD4_02577 PF17243 POTRA domain TamA domain 1 AbD4_02578 PF07690 Major Facilitator Superfamily AbD4_02579 PF03232 Ubiquinone biosynthesis protein COQ7 AbD4_02581 PF00120 Glutamine synthetase, catalytic domain AbD4_02582 PF00072 Response regulator receiver domain AbD4_02582 PF00486 Transcriptional regulatory protein, C terminal AbD4_02583 PF13493 Domain of unknown function (DUF4118) AbD4_02583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_02583 PF00512 His Kinase A (phospho-acceptor) domain AbD4_02583 PF02702 Osmosensitive K+ channel His kinase sensor domain AbD4_02584 PF02669 K+-transporting ATPase, c chain AbD4_02586 PF03814 Potassium-transporting ATPase A subunit AbD4_02587 PF03814 Potassium-transporting ATPase A subunit AbD4_02591 PF03109 ABC1 family AbD4_02592 PF00899 ThiF family AbD4_02593 PF01613 Flavin reductase like domain AbD4_02594 PF00501 AMP-binding enzyme AbD4_02594 PF13193 AMP-binding enzyme C-terminal domain AbD4_02595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_02595 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_02596 PF00106 short chain dehydrogenase AbD4_02597 PF12833 Helix-turn-helix domain AbD4_02598 PF13847 Methyltransferase domain AbD4_02598 PF17827 PrmC N-terminal domain AbD4_02599 PF00472 RF-1 domain AbD4_02599 PF03462 PCRF domain AbD4_02601 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02601 PF03466 LysR substrate binding domain AbD4_02604 PF00296 Luciferase-like monooxygenase AbD4_02606 PF13994 PgaD-like protein AbD4_02607 PF00535 Glycosyl transferase family 2 AbD4_02608 PF01522 Polysaccharide deacetylase AbD4_02608 PF14883 Hypothetical glycosyl hydrolase family 13 AbD4_02612 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02612 PF13817 IS66 C-terminal element AbD4_02612 PF13007 Transposase C of IS166 homeodomain AbD4_02612 PF03050 Transposase IS66 family AbD4_02614 PF03618 Kinase/pyrophosphorylase AbD4_02615 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AbD4_02615 PF02896 PEP-utilising enzyme, TIM barrel domain AbD4_02615 PF00391 PEP-utilising enzyme, mobile domain AbD4_02617 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AbD4_02617 PF06481 COX Aromatic Rich Motif AbD4_02618 PF00115 Cytochrome C and Quinol oxidase polypeptide I AbD4_02619 PF00510 Cytochrome c oxidase subunit III AbD4_02620 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AbD4_02621 PF01040 UbiA prenyltransferase family AbD4_02622 PF01250 Ribosomal protein S6 AbD4_02623 PF01084 Ribosomal protein S18 AbD4_02624 PF03948 Ribosomal protein L9, C-terminal domain AbD4_02624 PF01281 Ribosomal protein L9, N-terminal domain AbD4_02625 PF00772 DnaB-like helicase N terminal domain AbD4_02625 PF03796 DnaB-like helicase C terminal domain AbD4_02626 PF00842 Alanine racemase, C-terminal domain AbD4_02626 PF01168 Alanine racemase, N-terminal domain AbD4_02628 PF08379 Bacterial transglutaminase-like N-terminal region AbD4_02628 PF01841 Transglutaminase-like superfamily AbD4_02630 PF14403 Circularly permuted ATP-grasp type 2 AbD4_02632 PF01134 Glucose inhibited division protein A AbD4_02632 PF13932 GidA associated domain AbD4_02636 PF02954 Bacterial regulatory protein, Fis family AbD4_02637 PF01808 AICARFT/IMPCHase bienzyme AbD4_02637 PF02142 MGS-like domain AbD4_02638 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AbD4_02638 PF02843 Phosphoribosylglycinamide synthetase, C domain AbD4_02638 PF02844 Phosphoribosylglycinamide synthetase, N domain AbD4_02639 PF03180 NLPA lipoprotein AbD4_02640 PF00005 ABC transporter AbD4_02640 PF09383 NIL domain AbD4_02641 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02642 PF16123 Hydroxyacylglutathione hydrolase C-terminus AbD4_02642 PF00753 Metallo-beta-lactamase superfamily AbD4_02644 PF00375 Sodium:dicarboxylate symporter family AbD4_02647 PF03050 Transposase IS66 family AbD4_02647 PF13817 IS66 C-terminal element AbD4_02647 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02647 PF13007 Transposase C of IS166 homeodomain AbD4_02648 PF00375 Sodium:dicarboxylate symporter family AbD4_02652 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02652 PF03466 LysR substrate binding domain AbD4_02653 PF07690 Major Facilitator Superfamily AbD4_02654 PF01494 FAD binding domain AbD4_02656 PF00440 Bacterial regulatory proteins, tetR family AbD4_02656 PF17932 Tetracyclin repressor-like, C-terminal domain AbD4_02658 PF07995 Glucose / Sorbosone dehydrogenase AbD4_02659 PF00892 EamA-like transporter family AbD4_02660 PF01177 Asp/Glu/Hydantoin racemase AbD4_02661 PF00085 Thioredoxin AbD4_02661 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02664 PF02470 MlaD protein AbD4_02665 PF04403 Paraquat-inducible protein A AbD4_02671 PF00293 NUDIX domain AbD4_02672 PF00083 Sugar (and other) transporter AbD4_02672 PF08946 Osmosensory transporter coiled coil AbD4_02682 PF00392 Bacterial regulatory proteins, gntR family AbD4_02682 PF07729 FCD domain AbD4_02684 PF03616 Sodium/glutamate symporter AbD4_02685 PF00561 alpha/beta hydrolase fold AbD4_02690 PF04076 Bacterial OB fold (BOF) protein AbD4_02692 PF13649 Methyltransferase domain AbD4_02696 PF00324 Amino acid permease AbD4_02697 PF00171 Aldehyde dehydrogenase family AbD4_02698 PF00202 Aminotransferase class-III AbD4_02699 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02699 PF03466 LysR substrate binding domain AbD4_02707 PF04829 Pre-toxin domain with VENN motif AbD4_02707 PF13018 Extended Signal Peptide of Type V secretion system AbD4_02707 PF13332 Hemagglutinin repeat AbD4_02707 PF05860 haemagglutination activity domain AbD4_02707 PF13018 Extended Signal Peptide of Type V secretion system AbD4_02707 PF13332 Hemagglutinin repeat AbD4_02707 PF05860 haemagglutination activity domain AbD4_02707 PF04829 Pre-toxin domain with VENN motif AbD4_02708 PF08479 POTRA domain, ShlB-type AbD4_02708 PF17287 POTRA domain AbD4_02708 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AbD4_02713 PF00069 Protein kinase domain AbD4_02713 PF03793 PASTA domain AbD4_02717 PF00814 Glycoprotease family AbD4_02718 PF01165 Ribosomal protein S21 AbD4_02719 PF09424 Yqey-like protein AbD4_02720 PF01435 Peptidase family M48 AbD4_02721 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AbD4_02721 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AbD4_02724 PF00156 Phosphoribosyl transferase domain AbD4_02725 PF02674 Colicin V production protein AbD4_02726 PF01180 Dihydroorotate dehydrogenase AbD4_02730 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AbD4_02730 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AbD4_02731 PF00881 Nitroreductase family AbD4_02733 PF00271 Helicase conserved C-terminal domain AbD4_02733 PF00270 DEAD/DEAH box helicase AbD4_02734 PF00313 'Cold-shock' DNA-binding domain AbD4_02736 PF04545 Sigma-70, region 4 AbD4_02736 PF04542 Sigma-70 region 2 AbD4_02736 PF00140 Sigma-70 factor, region 1.2 AbD4_02737 PF04241 Protein of unknown function (DUF423) AbD4_02739 PF05690 Thiazole biosynthesis protein ThiG AbD4_02741 PF03883 Peroxide stress protein YaaA AbD4_02743 PF06956 Regulator of RNA terminal phosphate cyclase AbD4_02743 PF00158 Sigma-54 interaction domain AbD4_02744 PF00753 Metallo-beta-lactamase superfamily AbD4_02745 PF01139 tRNA-splicing ligase RtcB AbD4_02748 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain AbD4_02748 PF01137 RNA 3'-terminal phosphate cyclase AbD4_02749 PF07687 Peptidase dimerisation domain AbD4_02749 PF01546 Peptidase family M20/M25/M40 AbD4_02751 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AbD4_02752 PF01817 Chorismate mutase type II AbD4_02752 PF01842 ACT domain AbD4_02752 PF00800 Prephenate dehydratase AbD4_02753 PF00756 Putative esterase AbD4_02754 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02754 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_02754 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_02755 PF00375 Sodium:dicarboxylate symporter family AbD4_02756 PF02885 Glycosyl transferase family, helical bundle domain AbD4_02756 PF00591 Glycosyl transferase family, a/b domain AbD4_02757 PF07023 Protein of unknown function (DUF1315) AbD4_02758 PF01513 ATP-NAD kinase AbD4_02759 PF00905 Penicillin binding protein transpeptidase domain AbD4_02759 PF14814 Bifunctional transglycosylase second domain AbD4_02759 PF00912 Transglycosylase AbD4_02761 PF00293 NUDIX domain AbD4_02763 PF08521 Two-component sensor kinase N-terminal AbD4_02763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_02763 PF00512 His Kinase A (phospho-acceptor) domain AbD4_02764 PF00072 Response regulator receiver domain AbD4_02764 PF00486 Transcriptional regulatory protein, C terminal AbD4_02766 PF00437 Type II/IV secretion system protein AbD4_02766 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AbD4_02770 PF01980 tRNA-methyltransferase O AbD4_02770 PF18389 TrmO C-terminal domain AbD4_02771 PF00175 Oxidoreductase NAD-binding domain AbD4_02771 PF00970 Oxidoreductase FAD-binding domain AbD4_02772 PF02567 Phenazine biosynthesis-like protein AbD4_02773 PF00155 Aminotransferase class I and II AbD4_02773 PF00392 Bacterial regulatory proteins, gntR family AbD4_02774 PF01136 Peptidase family U32 AbD4_02774 PF16325 Peptidase family U32 C-terminal domain AbD4_02775 PF00037 4Fe-4S binding domain AbD4_02776 PF00893 Small Multidrug Resistance protein AbD4_02777 PF00005 ABC transporter AbD4_02778 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02779 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02780 PF00497 Bacterial extracellular solute-binding proteins, family 3 AbD4_02781 PF03466 LysR substrate binding domain AbD4_02781 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02783 PF13533 Biotin-lipoyl like AbD4_02784 PF00873 AcrB/AcrD/AcrF family AbD4_02785 PF02321 Outer membrane efflux protein AbD4_02786 PF00464 Serine hydroxymethyltransferase AbD4_02843 PF03796 DnaB-like helicase C terminal domain AbD4_02843 PF00772 DnaB-like helicase N terminal domain AbD4_02855 PF12684 PDDEXK-like domain of unknown function (DUF3799) AbD4_02855 PF06630 Enterobacterial exodeoxyribonuclease VIII AbD4_02864 PF00589 Phage integrase family AbD4_02865 PF00005 ABC transporter AbD4_02866 PF01061 ABC-2 type transporter AbD4_02867 PF14489 QueF-like protein AbD4_02867 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AbD4_02869 PF01098 Cell cycle protein AbD4_02870 PF13406 Transglycosylase SLT domain AbD4_02871 PF05036 Sporulation related domain AbD4_02871 PF03330 Lytic transglycolase AbD4_02878 PF03050 Transposase IS66 family AbD4_02878 PF13817 IS66 C-terminal element AbD4_02878 PF13007 Transposase C of IS166 homeodomain AbD4_02878 PF13005 zinc-finger binding domain of transposase IS66 AbD4_02879 PF12833 Helix-turn-helix domain AbD4_02881 PF00889 Elongation factor TS AbD4_02882 PF00318 Ribosomal protein S2 AbD4_02883 PF00557 Metallopeptidase family M24 AbD4_02885 PF07690 Major Facilitator Superfamily AbD4_02888 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_02888 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AbD4_02889 PF04055 Radical SAM superfamily AbD4_02890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_02890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_02890 PF09317 Domain of unknown function (DUF1974) AbD4_02893 PF05221 S-adenosyl-L-homocysteine hydrolase AbD4_02893 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AbD4_02894 PF02219 Methylenetetrahydrofolate reductase AbD4_02895 PF04452 RNA methyltransferase AbD4_02896 PF03707 Bacterial signalling protein N terminal repeat AbD4_02896 PF00563 EAL domain AbD4_02896 PF00990 Diguanylate cyclase, GGDEF domain AbD4_02897 PF01515 Phosphate acetyl/butaryl transferase AbD4_02897 PF00390 Malic enzyme, N-terminal domain AbD4_02897 PF03949 Malic enzyme, NAD binding domain AbD4_02898 PF12627 Probable RNA and SrmB- binding site of polymerase A AbD4_02898 PF01743 Poly A polymerase head domain AbD4_02899 PF13180 PDZ domain AbD4_02900 PF01784 NIF3 (NGG1p interacting factor 3) AbD4_02901 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AbD4_02901 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AbD4_02908 PF01040 UbiA prenyltransferase family AbD4_02909 PF04345 Chorismate lyase AbD4_02910 PF00120 Glutamine synthetase, catalytic domain AbD4_02910 PF03951 Glutamine synthetase, beta-Grasp domain AbD4_02911 PF00854 POT family AbD4_02913 PF00117 Glutamine amidotransferase class-I AbD4_02914 PF01433 Peptidase family M1 domain AbD4_02914 PF11838 ERAP1-like C-terminal domain AbD4_02915 PF00593 TonB dependent receptor AbD4_02915 PF07715 TonB-dependent Receptor Plug Domain AbD4_02916 PF00591 Glycosyl transferase family, a/b domain AbD4_02916 PF02885 Glycosyl transferase family, helical bundle domain AbD4_02917 PF00218 Indole-3-glycerol phosphate synthase AbD4_02918 PF01713 Smr domain AbD4_02920 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AbD4_02920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AbD4_02921 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_02921 PF01799 [2Fe-2S] binding domain AbD4_02922 PF01227 GTP cyclohydrolase I AbD4_02923 PF00144 Beta-lactamase AbD4_02926 PF05675 Protein of unknown function (DUF817) AbD4_02927 PF01208 Uroporphyrinogen decarboxylase (URO-D) AbD4_02929 PF00425 chorismate binding enzyme AbD4_02930 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AbD4_02930 PF01648 4'-phosphopantetheinyl transferase superfamily AbD4_02931 PF00975 Thioesterase domain AbD4_02932 PF00005 ABC transporter AbD4_02933 PF00005 ABC transporter AbD4_02935 PF00282 Pyridoxal-dependent decarboxylase conserved domain AbD4_02936 PF00550 Phosphopantetheine attachment site AbD4_02936 PF00857 Isochorismatase family AbD4_02937 PF00501 AMP-binding enzyme AbD4_02937 PF13193 AMP-binding enzyme C-terminal domain AbD4_02938 PF00550 Phosphopantetheine attachment site AbD4_02938 PF00501 AMP-binding enzyme AbD4_02938 PF00668 Condensation domain AbD4_02939 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AbD4_02940 PF00593 TonB dependent receptor AbD4_02940 PF07715 TonB-dependent Receptor Plug Domain AbD4_02941 PF01497 Periplasmic binding protein AbD4_02942 PF00005 ABC transporter AbD4_02943 PF01032 FecCD transport family AbD4_02944 PF01032 FecCD transport family AbD4_02946 PF00668 Condensation domain AbD4_02946 PF00550 Phosphopantetheine attachment site AbD4_02946 PF00501 AMP-binding enzyme AbD4_02946 PF13193 AMP-binding enzyme C-terminal domain AbD4_02946 PF00975 Thioesterase domain AbD4_02947 PF00501 AMP-binding enzyme AbD4_02947 PF13193 AMP-binding enzyme C-terminal domain AbD4_02947 PF00668 Condensation domain AbD4_02947 PF00550 Phosphopantetheine attachment site AbD4_02950 PF13309 HTH domain AbD4_02950 PF08348 YheO-like PAS domain AbD4_02951 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_02952 PF02678 Pirin AbD4_02952 PF17954 Quercetinase C-terminal cupin domain AbD4_02961 PF04328 Selenoprotein, putative AbD4_02962 PF02554 Carbon starvation protein CstA AbD4_02962 PF13722 5TM C-terminal transporter carbon starvation CstA AbD4_02964 PF01132 Elongation factor P (EF-P) OB domain AbD4_02964 PF08207 Elongation factor P (EF-P) KOW-like domain AbD4_02964 PF09285 Elongation factor P, C-terminal AbD4_02965 PF04055 Radical SAM superfamily AbD4_02967 PF12792 CSS motif domain associated with EAL AbD4_02967 PF00563 EAL domain AbD4_02968 PF01197 Ribosomal protein L31 AbD4_02969 PF13593 SBF-like CPA transporter family (DUF4137) AbD4_02970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AbD4_02971 PF07690 Major Facilitator Superfamily AbD4_02972 PF13654 AAA domain AbD4_02972 PF05362 Lon protease (S16) C-terminal proteolytic domain AbD4_02973 PF03466 LysR substrate binding domain AbD4_02973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_02974 PF01476 LysM domain AbD4_02974 PF01551 Peptidase family M23 AbD4_02975 PF01975 Survival protein SurE AbD4_02978 PF07943 Penicillin-binding protein 5, C-terminal domain AbD4_02978 PF00768 D-alanyl-D-alanine carboxypeptidase AbD4_02979 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_02980 PF13344 Haloacid dehalogenase-like hydrolase AbD4_02980 PF00293 NUDIX domain AbD4_02982 PF04356 Protein of unknown function (DUF489) AbD4_02983 PF08328 Adenylosuccinate lyase C-terminal AbD4_02983 PF00206 Lyase AbD4_02986 PF01343 Peptidase family S49 AbD4_02986 PF08496 Peptidase family S49 N-terminal AbD4_02987 PF00005 ABC transporter AbD4_02988 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02989 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_02990 PF12849 PBP superfamily domain AbD4_02991 PF00324 Amino acid permease AbD4_02992 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AbD4_02992 PF00205 Thiamine pyrophosphate enzyme, central domain AbD4_02992 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AbD4_02993 PF01037 Lrp/AsnC ligand binding domain AbD4_02994 PF00171 Aldehyde dehydrogenase family AbD4_02995 PF00282 Pyridoxal-dependent decarboxylase conserved domain AbD4_02996 PF00202 Aminotransferase class-III AbD4_02998 PF17754 MftR C-terminal domain AbD4_02998 PF00440 Bacterial regulatory proteins, tetR family AbD4_03000 PF00487 Fatty acid desaturase AbD4_03001 PF00970 Oxidoreductase FAD-binding domain AbD4_03001 PF00175 Oxidoreductase NAD-binding domain AbD4_03001 PF00111 2Fe-2S iron-sulfur cluster binding domain AbD4_03002 PF00440 Bacterial regulatory proteins, tetR family AbD4_03004 PF18337 RapA N-terminal Tudor like domain AbD4_03004 PF00176 SNF2 family N-terminal domain AbD4_03004 PF12137 RNA polymerase recycling family C-terminal AbD4_03004 PF00271 Helicase conserved C-terminal domain AbD4_03004 PF18339 RapA N-terminal Tudor like domain 1 AbD4_03005 PF00849 RNA pseudouridylate synthase AbD4_03007 PF00202 Aminotransferase class-III AbD4_03008 PF02581 Thiamine monophosphate synthase AbD4_03010 PF09615 CRISPR-associated protein (Cas_Csy3) AbD4_03011 PF09614 CRISPR-associated protein (Cas_Csy2) AbD4_03012 PF09611 CRISPR-associated protein (Cas_Csy1) AbD4_03014 PF01867 CRISPR associated protein Cas1 AbD4_03019 PF05193 Peptidase M16 inactive domain AbD4_03019 PF00675 Insulinase (Peptidase family M16) AbD4_03020 PF02567 Phenazine biosynthesis-like protein AbD4_03021 PF00375 Sodium:dicarboxylate symporter family AbD4_03022 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03022 PF03466 LysR substrate binding domain AbD4_03023 PF06779 Uncharacterised MFS-type transporter YbfB AbD4_03026 PF00180 Isocitrate/isopropylmalate dehydrogenase AbD4_03027 PF00849 RNA pseudouridylate synthase AbD4_03028 PF03971 Monomeric isocitrate dehydrogenase AbD4_03030 PF07943 Penicillin-binding protein 5, C-terminal domain AbD4_03030 PF00768 D-alanyl-D-alanine carboxypeptidase AbD4_03031 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_03032 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AbD4_03033 PF00875 DNA photolyase AbD4_03033 PF03441 FAD binding domain of DNA photolyase AbD4_03039 PF02350 UDP-N-acetylglucosamine 2-epimerase AbD4_03042 PF03060 Nitronate monooxygenase AbD4_03043 PF01207 Dihydrouridine synthase (Dus) AbD4_03044 PF07759 Protein of unknown function (DUF1615) AbD4_03046 PF00696 Amino acid kinase family AbD4_03046 PF01472 PUA domain AbD4_03047 PF01018 GTP1/OBG AbD4_03047 PF01926 50S ribosome-binding GTPase AbD4_03050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AbD4_03050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AbD4_03051 PF00892 EamA-like transporter family AbD4_03053 PF17757 UvrB interaction domain AbD4_03053 PF04851 Type III restriction enzyme, res subunit AbD4_03053 PF02151 UvrB/uvrC motif AbD4_03053 PF00271 Helicase conserved C-terminal domain AbD4_03053 PF12344 Ultra-violet resistance protein B AbD4_03055 PF17151 Periplasmic sensor domain AbD4_03055 PF00990 Diguanylate cyclase, GGDEF domain AbD4_03057 PF00155 Aminotransferase class I and II AbD4_03062 PF00106 short chain dehydrogenase AbD4_03063 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AbD4_03064 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AbD4_03065 PF02565 Recombination protein O C terminal AbD4_03065 PF11967 Recombination protein O N terminal AbD4_03067 PF07650 KH domain AbD4_03067 PF01926 50S ribosome-binding GTPase AbD4_03068 PF14622 Ribonuclease-III-like AbD4_03068 PF00035 Double-stranded RNA binding motif AbD4_03070 PF10502 Signal peptidase, peptidase S26 AbD4_03071 PF00679 Elongation factor G C-terminus AbD4_03071 PF00009 Elongation factor Tu GTP binding domain AbD4_03071 PF03144 Elongation factor Tu domain 2 AbD4_03071 PF06421 GTP-binding protein LepA C-terminus AbD4_03073 PF13180 PDZ domain AbD4_03074 PF00890 FAD binding domain AbD4_03074 PF02910 Fumarate reductase flavoprotein C-term AbD4_03076 PF02223 Thymidylate kinase AbD4_03077 PF02618 YceG-like family AbD4_03078 PF01063 Amino-transferase class IV AbD4_03081 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_03082 PF00528 Binding-protein-dependent transport system inner membrane component AbD4_03083 PF00005 ABC transporter AbD4_03083 PF12857 TOBE-like domain AbD4_03084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03084 PF03466 LysR substrate binding domain AbD4_03086 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_03086 PF14602 Hexapeptide repeat of succinyl-transferase AbD4_03086 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AbD4_03088 PF06508 Queuosine biosynthesis protein QueC AbD4_03091 PF00578 AhpC/TSA family AbD4_03093 PF01467 Cytidylyltransferase-like AbD4_03093 PF00293 NUDIX domain AbD4_03094 PF00378 Enoyl-CoA hydratase/isomerase AbD4_03095 PF01784 NIF3 (NGG1p interacting factor 3) AbD4_03097 PF07690 Major Facilitator Superfamily AbD4_03098 PF02769 AIR synthase related protein, C-terminal domain AbD4_03098 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AbD4_03098 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AbD4_03099 PF01966 HD domain AbD4_03100 PF07499 RuvA, C-terminal domain AbD4_03100 PF01330 RuvA N terminal domain AbD4_03101 PF05496 Holliday junction DNA helicase RuvB P-loop domain AbD4_03101 PF05491 RuvB C-terminal winged helix domain AbD4_03101 PF17864 RuvB AAA lid domain AbD4_03102 PF07687 Peptidase dimerisation domain AbD4_03102 PF01546 Peptidase family M20/M25/M40 AbD4_03103 PF03061 Thioesterase superfamily AbD4_03104 PF01618 MotA/TolQ/ExbB proton channel family AbD4_03105 PF02472 Biopolymer transport protein ExbD/TolR AbD4_03107 PF04052 TolB amino-terminal domain AbD4_03107 PF07676 WD40-like Beta Propeller Repeat AbD4_03108 PF00691 OmpA family AbD4_03110 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AbD4_03111 PF00588 SpoU rRNA Methylase family AbD4_03111 PF08032 RNA 2'-O ribose methyltransferase substrate binding AbD4_03118 PF03050 Transposase IS66 family AbD4_03118 PF13817 IS66 C-terminal element AbD4_03118 PF13007 Transposase C of IS166 homeodomain AbD4_03118 PF13005 zinc-finger binding domain of transposase IS66 AbD4_03121 PF08299 Bacterial dnaA protein helix-turn-helix AbD4_03121 PF11638 DnaA N-terminal domain AbD4_03121 PF00308 Bacterial dnaA protein AbD4_03122 PF01594 AI-2E family transporter AbD4_03123 PF00586 AIR synthase related protein, N-terminal domain AbD4_03123 PF02769 AIR synthase related protein, C-terminal domain AbD4_03124 PF00551 Formyl transferase AbD4_03125 PF12697 Alpha/beta hydrolase family AbD4_03126 PF01343 Peptidase family S49 AbD4_03126 PF06965 Na+/H+ antiporter 1 AbD4_03128 PF03772 Competence protein AbD4_03128 PF13567 Domain of unknown function (DUF4131) AbD4_03128 PF00753 Metallo-beta-lactamase superfamily AbD4_03129 PF00005 ABC transporter AbD4_03130 PF02687 FtsX-like permease family AbD4_03130 PF12704 MacB-like periplasmic core domain AbD4_03132 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AbD4_03135 PF00266 Aminotransferase class-V AbD4_03137 PF13533 Biotin-lipoyl like AbD4_03141 PF00535 Glycosyl transferase family 2 AbD4_03144 PF03989 DNA gyrase C-terminal domain, beta-propeller AbD4_03144 PF00521 DNA gyrase/topoisomerase IV, subunit A AbD4_03145 PF00766 Electron transfer flavoprotein FAD-binding domain AbD4_03145 PF01012 Electron transfer flavoprotein domain AbD4_03146 PF01012 Electron transfer flavoprotein domain AbD4_03147 PF02899 Phage integrase, N-terminal SAM-like domain AbD4_03147 PF00589 Phage integrase family AbD4_03148 PF01810 LysE type translocator AbD4_03149 PF01678 Diaminopimelate epimerase AbD4_03150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AbD4_03150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AbD4_03152 PF00324 Amino acid permease AbD4_03153 PF18073 Rubredoxin metal binding domain AbD4_03155 PF00152 tRNA synthetases class II (D, K and N) AbD4_03156 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AbD4_03156 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AbD4_03156 PF11890 Domain of unknown function (DUF3410) AbD4_03157 PF06803 Protein of unknown function (DUF1232) AbD4_03158 PF02634 FdhD/NarQ family AbD4_03159 PF00384 Molybdopterin oxidoreductase AbD4_03160 PF02595 Glycerate kinase family AbD4_03163 PF00881 Nitroreductase family AbD4_03169 PF09857 Putative toxin of bacterial toxin-antitoxin pair AbD4_03171 PF00501 AMP-binding enzyme AbD4_03171 PF13193 AMP-binding enzyme C-terminal domain AbD4_03171 PF00668 Condensation domain AbD4_03171 PF00550 Phosphopantetheine attachment site AbD4_03171 PF00975 Thioesterase domain AbD4_03174 PF01272 Transcription elongation factor, GreA/GreB, C-term AbD4_03174 PF03449 Transcription elongation factor, N-terminal AbD4_03175 PF01464 Transglycosylase SLT domain AbD4_03175 PF00497 Bacterial extracellular solute-binding proteins, family 3 AbD4_03177 PF01171 PP-loop family AbD4_03178 PF01464 Transglycosylase SLT domain AbD4_03179 PF01435 Peptidase family M48 AbD4_03181 PF00873 AcrB/AcrD/AcrF family AbD4_03182 PF03009 Glycerophosphoryl diester phosphodiesterase family AbD4_03184 PF01219 Prokaryotic diacylglycerol kinase AbD4_03185 PF00118 TCP-1/cpn60 chaperonin family AbD4_03186 PF00166 Chaperonin 10 Kd subunit AbD4_03187 PF00149 Calcineurin-like phosphoesterase AbD4_03188 PF00781 Diacylglycerol kinase catalytic domain AbD4_03189 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AbD4_03189 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AbD4_03190 PF01266 FAD dependent oxidoreductase AbD4_03190 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AbD4_03191 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AbD4_03191 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AbD4_03192 PF00083 Sugar (and other) transporter AbD4_03195 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AbD4_03195 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AbD4_03198 PF09423 PhoD-like phosphatase AbD4_03198 PF16655 PhoD-like phosphatase, N-terminal domain AbD4_03202 PF00809 Pterin binding enzyme AbD4_03203 PF01434 Peptidase family M41 AbD4_03203 PF06480 FtsH Extracellular AbD4_03203 PF17862 AAA+ lid domain AbD4_03203 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_03204 PF01728 FtsJ-like methyltransferase AbD4_03205 PF01985 CRS1 / YhbY (CRM) domain AbD4_03208 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AbD4_03208 PF00117 Glutamine amidotransferase class-I AbD4_03209 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AbD4_03209 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AbD4_03209 PF02142 MGS-like domain AbD4_03210 PF01272 Transcription elongation factor, GreA/GreB, C-term AbD4_03210 PF03449 Transcription elongation factor, N-terminal AbD4_03211 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_03212 PF00582 Universal stress protein family AbD4_03213 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AbD4_03215 PF09587 Bacterial capsule synthesis protein PGA_cap AbD4_03217 PF13005 zinc-finger binding domain of transposase IS66 AbD4_03217 PF13007 Transposase C of IS166 homeodomain AbD4_03217 PF13817 IS66 C-terminal element AbD4_03217 PF03050 Transposase IS66 family AbD4_03222 PF00999 Sodium/hydrogen exchanger family AbD4_03223 PF04228 Putative neutral zinc metallopeptidase AbD4_03224 PF05661 Protein of unknown function (DUF808) AbD4_03225 PF00579 tRNA synthetases class I (W and Y) AbD4_03226 PF00549 CoA-ligase AbD4_03226 PF02629 CoA binding domain AbD4_03227 PF00549 CoA-ligase AbD4_03227 PF08442 ATP-grasp domain AbD4_03228 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_03228 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AbD4_03229 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AbD4_03229 PF00364 Biotin-requiring enzyme AbD4_03229 PF02817 e3 binding domain AbD4_03230 PF00676 Dehydrogenase E1 component AbD4_03230 PF16078 2-oxoglutarate dehydrogenase N-terminus AbD4_03230 PF16870 2-oxoglutarate dehydrogenase C-terminal AbD4_03230 PF02779 Transketolase, pyrimidine binding domain AbD4_03231 PF13085 2Fe-2S iron-sulfur cluster binding domain AbD4_03232 PF00890 FAD binding domain AbD4_03232 PF02910 Fumarate reductase flavoprotein C-term AbD4_03233 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AbD4_03234 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AbD4_03235 PF00285 Citrate synthase, C-terminal domain AbD4_03237 PF17773 UPF0176 acylphosphatase like domain AbD4_03237 PF00581 Rhodanese-like domain AbD4_03240 PF00140 Sigma-70 factor, region 1.2 AbD4_03240 PF04546 Sigma-70, non-essential region AbD4_03240 PF04545 Sigma-70, region 4 AbD4_03240 PF04542 Sigma-70 region 2 AbD4_03240 PF03979 Sigma-70 factor, region 1.1 AbD4_03240 PF04539 Sigma-70 region 3 AbD4_03241 PF04359 Protein of unknown function (DUF493) AbD4_03242 PF03099 Biotin/lipoate A/B protein ligase family AbD4_03244 PF00465 Iron-containing alcohol dehydrogenase AbD4_03245 PF13520 Amino acid permease AbD4_03246 PF03358 NADPH-dependent FMN reductase AbD4_03247 PF01638 HxlR-like helix-turn-helix AbD4_03248 PF00588 SpoU rRNA Methylase family AbD4_03249 PF10414 Sirohaem synthase dimerisation region AbD4_03249 PF14824 Sirohaem biosynthesis protein central AbD4_03249 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AbD4_03250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AbD4_03250 PF02403 Seryl-tRNA synthetase N-terminal domain AbD4_03252 PF03548 Outer membrane lipoprotein carrier protein LolA AbD4_03253 PF01016 Ribosomal L27 protein AbD4_03254 PF00829 Ribosomal prokaryotic L21 protein AbD4_03256 PF00348 Polyprenyl synthetase AbD4_03258 PF01569 PAP2 superfamily AbD4_03259 PF00529 HlyD membrane-fusion protein of T1SS AbD4_03259 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_03260 PF00873 AcrB/AcrD/AcrF family AbD4_03261 PF02321 Outer membrane efflux protein AbD4_03262 PF01906 Putative heavy-metal-binding AbD4_03263 PF01906 Putative heavy-metal-binding AbD4_03267 PF00133 tRNA synthetases class I (I, L, M and V) AbD4_03267 PF10458 Valyl tRNA synthetase tRNA binding arm AbD4_03267 PF08264 Anticodon-binding domain of tRNA AbD4_03271 PF03466 LysR substrate binding domain AbD4_03271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03272 PF00909 Ammonium Transporter Family AbD4_03274 PF08521 Two-component sensor kinase N-terminal AbD4_03274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03274 PF00512 His Kinase A (phospho-acceptor) domain AbD4_03275 PF00072 Response regulator receiver domain AbD4_03275 PF00486 Transcriptional regulatory protein, C terminal AbD4_03276 PF08019 Phosphoethanolamine transferase EptA/EptB AbD4_03276 PF00884 Sulfatase AbD4_03279 PF13005 zinc-finger binding domain of transposase IS66 AbD4_03279 PF13007 Transposase C of IS166 homeodomain AbD4_03279 PF03050 Transposase IS66 family AbD4_03279 PF13817 IS66 C-terminal element AbD4_03284 PF01734 Patatin-like phospholipase AbD4_03286 PF01145 SPFH domain / Band 7 family AbD4_03287 PF04237 YjbR AbD4_03288 PF00348 Polyprenyl synthetase AbD4_03289 PF04303 PrpF protein AbD4_03290 PF00324 Amino acid permease AbD4_03292 PF01965 DJ-1/PfpI family AbD4_03293 PF00550 Phosphopantetheine attachment site AbD4_03293 PF08659 KR domain AbD4_03293 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_03293 PF02801 Beta-ketoacyl synthase, C-terminal domain AbD4_03293 PF00109 Beta-ketoacyl synthase, N-terminal domain AbD4_03293 PF00698 Acyl transferase domain AbD4_03293 PF09277 Erythronolide synthase, docking AbD4_03293 PF16197 Ketoacyl-synthetase C-terminal extension AbD4_03293 PF08990 Erythronolide synthase docking AbD4_03293 PF14765 Polyketide synthase dehydratase AbD4_03294 PF06719 AraC-type transcriptional regulator N-terminus AbD4_03294 PF12833 Helix-turn-helix domain AbD4_03295 PF02673 Bacitracin resistance protein BacA AbD4_03299 PF02525 Flavodoxin-like fold AbD4_03302 PF01507 Phosphoadenosine phosphosulfate reductase family AbD4_03303 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AbD4_03303 PF06974 Protein of unknown function (DUF1298) AbD4_03305 PF10150 Ribonuclease E/G family AbD4_03305 PF00575 S1 RNA binding domain AbD4_03306 PF02545 Maf-like protein AbD4_03307 PF04093 rod shape-determining protein MreD AbD4_03308 PF04085 rod shape-determining protein MreC AbD4_03310 PF02686 Glu-tRNAGln amidotransferase C subunit AbD4_03311 PF01425 Amidase AbD4_03312 PF02934 GatB/GatE catalytic domain AbD4_03312 PF02637 GatB domain AbD4_03317 PF01431 Peptidase family M13 AbD4_03317 PF05649 Peptidase family M13 AbD4_03318 PF05992 SbmA/BacA-like family AbD4_03319 PF13291 ACT domain AbD4_03319 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_03320 PF01734 Patatin-like phospholipase AbD4_03321 PF01235 Sodium:alanine symporter family AbD4_03324 PF00881 Nitroreductase family AbD4_03325 PF07690 Major Facilitator Superfamily AbD4_03326 PF12805 FUSC-like inner membrane protein yccS AbD4_03328 PF00258 Flavodoxin AbD4_03328 PF00667 FAD binding domain AbD4_03328 PF00175 Oxidoreductase NAD-binding domain AbD4_03336 PF17969 L,D-transpeptidase C-terminal domain AbD4_03336 PF03734 L,D-transpeptidase catalytic domain AbD4_03337 PF04304 Protein of unknown function (DUF454) AbD4_03339 PF08085 Entericidin EcnA/B family AbD4_03340 PF07687 Peptidase dimerisation domain AbD4_03340 PF01546 Peptidase family M20/M25/M40 AbD4_03342 PF01584 CheW-like domain AbD4_03342 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03342 PF01627 Hpt domain AbD4_03342 PF00072 Response regulator receiver domain AbD4_03343 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AbD4_03343 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AbD4_03344 PF01584 CheW-like domain AbD4_03345 PF00072 Response regulator receiver domain AbD4_03346 PF00072 Response regulator receiver domain AbD4_03349 PF00873 AcrB/AcrD/AcrF family AbD4_03350 PF04073 Aminoacyl-tRNA editing domain AbD4_03350 PF03129 Anticodon binding domain AbD4_03350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AbD4_03351 PF07411 Domain of unknown function (DUF1508) AbD4_03352 PF03831 PhnA domain AbD4_03352 PF08274 PhnA Zinc-Ribbon AbD4_03353 PF04343 Protein of unknown function, DUF488 AbD4_03355 PF01571 Aminomethyltransferase folate-binding domain AbD4_03356 PF10411 Disulfide bond isomerase protein N-terminus AbD4_03356 PF13098 Thioredoxin-like domain AbD4_03358 PF03547 Membrane transport protein AbD4_03359 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AbD4_03360 PF07715 TonB-dependent Receptor Plug Domain AbD4_03360 PF00593 TonB dependent receptor AbD4_03361 PF02245 Methylpurine-DNA glycosylase (MPG) AbD4_03362 PF06827 Zinc finger found in FPG and IleRS AbD4_03362 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AbD4_03362 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AbD4_03365 PF01741 Large-conductance mechanosensitive channel, MscL AbD4_03367 PF03144 Elongation factor Tu domain 2 AbD4_03367 PF00009 Elongation factor Tu GTP binding domain AbD4_03367 PF00679 Elongation factor G C-terminus AbD4_03368 PF00860 Permease family AbD4_03369 PF08468 Methyltransferase small domain N-terminal AbD4_03369 PF05175 Methyltransferase small domain AbD4_03370 PF00324 Amino acid permease AbD4_03371 PF01139 tRNA-splicing ligase RtcB AbD4_03373 PF13505 Outer membrane protein beta-barrel domain AbD4_03373 PF00691 OmpA family AbD4_03375 PF02803 Thiolase, C-terminal domain AbD4_03375 PF00108 Thiolase, N-terminal domain AbD4_03377 PF00893 Small Multidrug Resistance protein AbD4_03379 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AbD4_03379 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AbD4_03380 PF01011 PQQ enzyme repeat AbD4_03381 PF04966 Carbohydrate-selective porin, OprB family AbD4_03382 PF02515 CoA-transferase family III AbD4_03383 PF12833 Helix-turn-helix domain AbD4_03383 PF02311 AraC-like ligand binding domain AbD4_03384 PF02803 Thiolase, C-terminal domain AbD4_03384 PF00108 Thiolase, N-terminal domain AbD4_03385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AbD4_03385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AbD4_03385 PF00378 Enoyl-CoA hydratase/isomerase AbD4_03388 PF13673 Acetyltransferase (GNAT) domain AbD4_03390 PF03006 Haemolysin-III related AbD4_03391 PF00083 Sugar (and other) transporter AbD4_03391 PF07690 Major Facilitator Superfamily AbD4_03393 PF01043 SecA preprotein cross-linking domain AbD4_03393 PF07517 SecA DEAD-like domain AbD4_03393 PF02810 SEC-C motif AbD4_03393 PF07516 SecA Wing and Scaffold domain AbD4_03394 PF00578 AhpC/TSA family AbD4_03394 PF10417 C-terminal domain of 1-Cys peroxiredoxin AbD4_03395 PF00753 Metallo-beta-lactamase superfamily AbD4_03398 PF02875 Mur ligase family, glutamate ligase domain AbD4_03398 PF08245 Mur ligase middle domain AbD4_03399 PF01039 Carboxyl transferase domain AbD4_03400 PF00290 Tryptophan synthase alpha chain AbD4_03405 PF00291 Pyridoxal-phosphate dependent enzyme AbD4_03406 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AbD4_03407 PF07715 TonB-dependent Receptor Plug Domain AbD4_03407 PF00593 TonB dependent receptor AbD4_03408 PF01923 Cobalamin adenosyltransferase AbD4_03412 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AbD4_03413 PF00486 Transcriptional regulatory protein, C terminal AbD4_03413 PF00072 Response regulator receiver domain AbD4_03414 PF00512 His Kinase A (phospho-acceptor) domain AbD4_03414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03414 PF00672 HAMP domain AbD4_03416 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_03416 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_03416 PF12806 Acetyl-CoA dehydrogenase C-terminal like AbD4_03416 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_03417 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_03417 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_03417 PF12806 Acetyl-CoA dehydrogenase C-terminal like AbD4_03417 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_03418 PF06146 Phosphate-starvation-inducible E AbD4_03422 PF07715 TonB-dependent Receptor Plug Domain AbD4_03422 PF00593 TonB dependent receptor AbD4_03425 PF00152 tRNA synthetases class II (D, K and N) AbD4_03425 PF02938 GAD domain AbD4_03425 PF01336 OB-fold nucleic acid binding domain AbD4_03428 PF08437 Glycosyl transferase family 8 C-terminal AbD4_03428 PF01501 Glycosyl transferase family 8 AbD4_03429 PF09612 Bacterial protein of unknown function (HtrL_YibB) AbD4_03431 PF00534 Glycosyl transferases group 1 AbD4_03431 PF13439 Glycosyltransferase Family 4 AbD4_03433 PF13439 Glycosyltransferase Family 4 AbD4_03433 PF00534 Glycosyl transferases group 1 AbD4_03434 PF01522 Polysaccharide deacetylase AbD4_03436 PF01063 Amino-transferase class IV AbD4_03437 PF08335 GlnD PII-uridylyltransferase AbD4_03437 PF03710 Glutamate-ammonia ligase adenylyltransferase AbD4_03438 PF07689 KaiB domain AbD4_03438 PF00512 His Kinase A (phospho-acceptor) domain AbD4_03438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03440 PF02547 Queuosine biosynthesis protein AbD4_03443 PF01702 Queuine tRNA-ribosyltransferase AbD4_03444 PF02699 Preprotein translocase subunit AbD4_03445 PF07549 SecD/SecF GG Motif AbD4_03445 PF13721 SecD export protein N-terminal TM region AbD4_03445 PF02355 Protein export membrane protein AbD4_03446 PF07549 SecD/SecF GG Motif AbD4_03446 PF02355 Protein export membrane protein AbD4_03447 PF04127 DNA / pantothenate metabolism flavoprotein AbD4_03447 PF02441 Flavoprotein AbD4_03448 PF04002 RadC-like JAB domain AbD4_03449 PF01062 Bestrophin, RFP-TM, chloride channel AbD4_03450 PF02811 PHP domain AbD4_03451 PF04279 Intracellular septation protein A AbD4_03452 PF03795 YCII-related domain AbD4_03454 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AbD4_03454 PF01266 FAD dependent oxidoreductase AbD4_03456 PF04461 Protein of unknown function (DUF520) AbD4_03458 PF03061 Thioesterase superfamily AbD4_03459 PF00085 Thioredoxin AbD4_03460 PF00561 alpha/beta hydrolase fold AbD4_03461 PF00753 Metallo-beta-lactamase superfamily AbD4_03461 PF04273 Putative phosphatase (DUF442) AbD4_03463 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_03463 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AbD4_03470 PF00990 Diguanylate cyclase, GGDEF domain AbD4_03470 PF17152 Periplasmic sensor domain AbD4_03471 PF00691 OmpA family AbD4_03471 PF01389 OmpA-like transmembrane domain AbD4_03472 PF00149 Calcineurin-like phosphoesterase AbD4_03472 PF10518 TAT (twin-arginine translocation) pathway signal sequence AbD4_03473 PF13091 PLD-like domain AbD4_03475 PF16360 GTP-binding GTPase Middle Region AbD4_03475 PF13167 GTP-binding GTPase N-terminal AbD4_03475 PF01926 50S ribosome-binding GTPase AbD4_03479 PF00149 Calcineurin-like phosphoesterase AbD4_03480 PF00398 Ribosomal RNA adenine dimethylase AbD4_03481 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AbD4_03482 PF00572 Ribosomal protein L13 AbD4_03483 PF00380 Ribosomal protein S9/S16 AbD4_03484 PF13417 Glutathione S-transferase, N-terminal domain AbD4_03484 PF00043 Glutathione S-transferase, C-terminal domain AbD4_03485 PF04386 Stringent starvation protein B AbD4_03487 PF00289 Biotin carboxylase, N-terminal domain AbD4_03487 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AbD4_03487 PF02785 Biotin carboxylase C-terminal domain AbD4_03487 PF00364 Biotin-requiring enzyme AbD4_03489 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_03489 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_03489 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_03490 PF01039 Carboxyl transferase domain AbD4_03493 PF17932 Tetracyclin repressor-like, C-terminal domain AbD4_03493 PF00440 Bacterial regulatory proteins, tetR family AbD4_03494 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_03494 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_03494 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_03503 PF01066 CDP-alcohol phosphatidyltransferase AbD4_03504 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AbD4_03508 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AbD4_03508 PF00056 lactate/malate dehydrogenase, NAD binding domain AbD4_03510 PF01551 Peptidase family M23 AbD4_03510 PF10145 Phage-related minor tail protein AbD4_03510 PF01464 Transglycosylase SLT domain AbD4_03511 PF04055 Radical SAM superfamily AbD4_03511 PF00919 Uncharacterized protein family UPF0004 AbD4_03511 PF01938 TRAM domain AbD4_03512 PF02562 PhoH-like protein AbD4_03513 PF02130 Uncharacterized protein family UPF0054 AbD4_03518 PF03358 NADPH-dependent FMN reductase AbD4_03519 PF03631 Virulence factor BrkB AbD4_03520 PF00892 EamA-like transporter family AbD4_03521 PF12833 Helix-turn-helix domain AbD4_03522 PF01557 Fumarylacetoacetate (FAA) hydrolase family AbD4_03532 PF17876 Cold shock domain AbD4_03532 PF08461 Ribonuclease R winged-helix domain AbD4_03532 PF08206 Ribonuclease B OB domain AbD4_03532 PF00773 RNB domain AbD4_03532 PF00575 S1 RNA binding domain AbD4_03533 PF01432 Peptidase family M3 AbD4_03534 PF09526 Probable metal-binding protein (DUF2387) AbD4_03541 PF03937 Flavinator of succinate dehydrogenase AbD4_03542 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_03542 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_03542 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_03543 PF00743 Flavin-binding monooxygenase-like AbD4_03544 PF01196 Ribosomal protein L17 AbD4_03545 PF01000 RNA polymerase Rpb3/RpoA insert domain AbD4_03545 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AbD4_03545 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AbD4_03546 PF00163 Ribosomal protein S4/S9 N-terminal domain AbD4_03546 PF01479 S4 domain AbD4_03547 PF00411 Ribosomal protein S11 AbD4_03548 PF00416 Ribosomal protein S13/S18 AbD4_03549 PF00444 Ribosomal protein L36 AbD4_03550 PF00344 SecY translocase AbD4_03551 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AbD4_03552 PF00327 Ribosomal protein L30p/L7e AbD4_03553 PF00333 Ribosomal protein S5, N-terminal domain AbD4_03553 PF03719 Ribosomal protein S5, C-terminal domain AbD4_03554 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AbD4_03555 PF00347 Ribosomal protein L6 AbD4_03556 PF00410 Ribosomal protein S8 AbD4_03557 PF00253 Ribosomal protein S14p/S29e AbD4_03558 PF00281 Ribosomal protein L5 AbD4_03558 PF00673 ribosomal L5P family C-terminus AbD4_03559 PF00467 KOW motif AbD4_03559 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AbD4_03560 PF00238 Ribosomal protein L14p/L23e AbD4_03561 PF00366 Ribosomal protein S17 AbD4_03562 PF00831 Ribosomal L29 protein AbD4_03563 PF00252 Ribosomal protein L16p/L10e AbD4_03564 PF07650 KH domain AbD4_03564 PF00189 Ribosomal protein S3, C-terminal domain AbD4_03565 PF00237 Ribosomal protein L22p/L17e AbD4_03566 PF00203 Ribosomal protein S19 AbD4_03567 PF00181 Ribosomal Proteins L2, RNA binding domain AbD4_03567 PF03947 Ribosomal Proteins L2, C-terminal domain AbD4_03568 PF00276 Ribosomal protein L23 AbD4_03569 PF00573 Ribosomal protein L4/L1 family AbD4_03570 PF00297 Ribosomal protein L3 AbD4_03571 PF00338 Ribosomal protein S10p/S20e AbD4_03572 PF00117 Glutamine amidotransferase class-I AbD4_03573 PF01053 Cys/Met metabolism PLP-dependent enzyme AbD4_03574 PF05872 Bacterial protein of unknown function (DUF853) AbD4_03575 PF00970 Oxidoreductase FAD-binding domain AbD4_03575 PF00175 Oxidoreductase NAD-binding domain AbD4_03575 PF00042 Globin AbD4_03576 PF02082 Transcriptional regulator AbD4_03577 PF01926 50S ribosome-binding GTPase AbD4_03579 PF00375 Sodium:dicarboxylate symporter family AbD4_03581 PF01553 Acyltransferase AbD4_03584 PF00270 DEAD/DEAH box helicase AbD4_03584 PF00271 Helicase conserved C-terminal domain AbD4_03584 PF17191 RecG wedge domain AbD4_03585 PF00156 Phosphoribosyl transferase domain AbD4_03586 PF00293 NUDIX domain AbD4_03587 PF03641 Possible lysine decarboxylase AbD4_03588 PF01544 CorA-like Mg2+ transporter protein AbD4_03590 PF05494 MlaC protein AbD4_03592 PF02405 Permease MlaE AbD4_03593 PF00005 ABC transporter AbD4_03595 PF03880 DbpA RNA binding domain AbD4_03595 PF00270 DEAD/DEAH box helicase AbD4_03595 PF12343 Cold shock protein DEAD box A AbD4_03595 PF00271 Helicase conserved C-terminal domain AbD4_03596 PF00459 Inositol monophosphatase family AbD4_03597 PF02779 Transketolase, pyrimidine binding domain AbD4_03597 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AbD4_03597 PF02780 Transketolase, C-terminal domain AbD4_03599 PF00925 GTP cyclohydrolase II AbD4_03600 PF01218 Coproporphyrinogen III oxidase AbD4_03601 PF08501 Shikimate dehydrogenase substrate binding domain AbD4_03601 PF01488 Shikimate / quinate 5-dehydrogenase AbD4_03601 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AbD4_03603 PF12806 Acetyl-CoA dehydrogenase C-terminal like AbD4_03603 PF02770 Acyl-CoA dehydrogenase, middle domain AbD4_03603 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AbD4_03603 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AbD4_03605 PF04024 PspC domain AbD4_03606 PF00571 CBS domain AbD4_03611 PF02091 Glycyl-tRNA synthetase alpha subunit AbD4_03612 PF02092 Glycyl-tRNA synthetase beta subunit AbD4_03612 PF05746 DALR anticodon binding domain AbD4_03613 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AbD4_03616 PF00892 EamA-like transporter family AbD4_03617 PF03466 LysR substrate binding domain AbD4_03617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03620 PF05922 Peptidase inhibitor I9 AbD4_03620 PF00082 Subtilase family AbD4_03623 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AbD4_03624 PF04996 Succinylarginine dihydrolase AbD4_03625 PF00171 Aldehyde dehydrogenase family AbD4_03626 PF04958 Arginine N-succinyltransferase beta subunit AbD4_03627 PF00202 Aminotransferase class-III AbD4_03628 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AbD4_03628 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AbD4_03630 PF00324 Amino acid permease AbD4_03632 PF08241 Methyltransferase domain AbD4_03637 PF01594 AI-2E family transporter AbD4_03638 PF00080 Copper/zinc superoxide dismutase (SODC) AbD4_03639 PF12805 FUSC-like inner membrane protein yccS AbD4_03640 PF07690 Major Facilitator Superfamily AbD4_03642 PF02525 Flavodoxin-like fold AbD4_03643 PF03992 Antibiotic biosynthesis monooxygenase AbD4_03645 PF02913 FAD linked oxidases, C-terminal domain AbD4_03645 PF01565 FAD binding domain AbD4_03646 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AbD4_03646 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AbD4_03647 PF00892 EamA-like transporter family AbD4_03648 PF00892 EamA-like transporter family AbD4_03650 PF01925 Sulfite exporter TauE/SafE AbD4_03651 PF09157 Pseudouridine synthase II TruB, C-terminal AbD4_03651 PF16198 tRNA pseudouridylate synthase B C-terminal domain AbD4_03651 PF01509 TruB family pseudouridylate synthase (N terminal domain) AbD4_03652 PF03280 Proteobacterial lipase chaperone protein AbD4_03653 PF00561 alpha/beta hydrolase fold AbD4_03654 PF01245 Ribosomal protein L19 AbD4_03655 PF01746 tRNA (Guanine-1)-methyltransferase AbD4_03656 PF05239 PRC-barrel domain AbD4_03656 PF01782 RimM N-terminal domain AbD4_03657 PF00886 Ribosomal protein S16 AbD4_03665 PF02401 LytB protein AbD4_03666 PF00625 Guanylate kinase AbD4_03667 PF01192 RNA polymerase Rpb6 AbD4_03668 PF13291 ACT domain AbD4_03668 PF04607 Region found in RelA / SpoT proteins AbD4_03668 PF02824 TGS domain AbD4_03669 PF01042 Endoribonuclease L-PSP AbD4_03670 PF04324 BFD-like [2Fe-2S] binding domain AbD4_03671 PF00210 Ferritin-like domain AbD4_03672 PF15864 Protein glycosylation ligase AbD4_03672 PF04932 O-Antigen ligase AbD4_03672 PF11846 Virulence factor membrane-bound polymerase, C-terminal AbD4_03673 PF07963 Prokaryotic N-terminal methylation motif AbD4_03673 PF00114 Pilin (bacterial filament) AbD4_03675 PF04536 TPM domain AbD4_03676 PF04011 LemA family AbD4_03678 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AbD4_03678 PF07992 Pyridine nucleotide-disulphide oxidoreductase AbD4_03679 PF01645 Conserved region in glutamate synthase AbD4_03679 PF04898 Glutamate synthase central domain AbD4_03679 PF00310 Glutamine amidotransferases class-II AbD4_03679 PF01493 GXGXG motif AbD4_03681 PF01761 3-dehydroquinate synthase AbD4_03682 PF01202 Shikimate kinase AbD4_03683 PF11741 AMIN domain AbD4_03683 PF00263 Bacterial type II and III secretion system protein AbD4_03683 PF03958 Bacterial type II/III secretion system short domain AbD4_03683 PF07660 Secretin and TonB N terminus short domain AbD4_03685 PF04350 Pilus assembly protein, PilO AbD4_03686 PF05137 Fimbrial assembly protein (PilN) AbD4_03687 PF11104 Type IV pilus assembly protein PilM; AbD4_03688 PF17092 Penicillin-binding protein OB-like domain AbD4_03688 PF00912 Transglycosylase AbD4_03688 PF00905 Penicillin binding protein transpeptidase domain AbD4_03689 PF13847 Methyltransferase domain AbD4_03691 PF00953 Glycosyl transferase family 4 AbD4_03692 PF08245 Mur ligase middle domain AbD4_03692 PF01225 Mur ligase family, catalytic domain AbD4_03692 PF02875 Mur ligase family, glutamate ligase domain AbD4_03693 PF02875 Mur ligase family, glutamate ligase domain AbD4_03693 PF08245 Mur ligase middle domain AbD4_03693 PF01225 Mur ligase family, catalytic domain AbD4_03694 PF03717 Penicillin-binding Protein dimerisation domain AbD4_03694 PF00905 Penicillin binding protein transpeptidase domain AbD4_03696 PF01795 MraW methylase family AbD4_03699 PF00749 tRNA synthetases class I (E and Q), catalytic domain AbD4_03702 PF00324 Amino acid permease AbD4_03708 PF01545 Cation efflux family AbD4_03709 PF00873 AcrB/AcrD/AcrF family AbD4_03710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_03710 PF00529 HlyD membrane-fusion protein of T1SS AbD4_03715 PF00005 ABC transporter AbD4_03715 PF12848 ABC transporter AbD4_03716 PF01053 Cys/Met metabolism PLP-dependent enzyme AbD4_03717 PF00106 short chain dehydrogenase AbD4_03718 PF01740 STAS domain AbD4_03718 PF00916 Sulfate permease family AbD4_03719 PF09371 Tex-like protein N-terminal domain AbD4_03719 PF17674 HHH domain AbD4_03719 PF00575 S1 RNA binding domain AbD4_03719 PF16921 Tex protein YqgF-like domain AbD4_03720 PF00072 Response regulator receiver domain AbD4_03720 PF00486 Transcriptional regulatory protein, C terminal AbD4_03721 PF00672 HAMP domain AbD4_03721 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03721 PF00512 His Kinase A (phospho-acceptor) domain AbD4_03722 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AbD4_03722 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AbD4_03723 PF00583 Acetyltransferase (GNAT) family AbD4_03727 PF00475 Imidazoleglycerol-phosphate dehydratase AbD4_03728 PF00117 Glutamine amidotransferase class-I AbD4_03731 PF00977 Histidine biosynthesis protein AbD4_03732 PF00005 ABC transporter AbD4_03732 PF00664 ABC transporter transmembrane region AbD4_03735 PF03992 Antibiotic biosynthesis monooxygenase AbD4_03738 PF01636 Phosphotransferase enzyme family AbD4_03739 PF00977 Histidine biosynthesis protein AbD4_03742 PF00230 Major intrinsic protein AbD4_03748 PF02705 K+ potassium transporter AbD4_03753 PF02525 Flavodoxin-like fold AbD4_03754 PF01638 HxlR-like helix-turn-helix AbD4_03760 PF01638 HxlR-like helix-turn-helix AbD4_03763 PF02311 AraC-like ligand binding domain AbD4_03763 PF12833 Helix-turn-helix domain AbD4_03764 PF00248 Aldo/keto reductase family AbD4_03768 PF03466 LysR substrate binding domain AbD4_03768 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03769 PF07690 Major Facilitator Superfamily AbD4_03774 PF01593 Flavin containing amine oxidoreductase AbD4_03775 PF02678 Pirin AbD4_03775 PF05726 Pirin C-terminal cupin domain AbD4_03776 PF00857 Isochorismatase family AbD4_03777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03778 PF00171 Aldehyde dehydrogenase family AbD4_03779 PF00202 Aminotransferase class-III AbD4_03780 PF00392 Bacterial regulatory proteins, gntR family AbD4_03780 PF00155 Aminotransferase class I and II AbD4_03781 PF00324 Amino acid permease AbD4_03783 PF03591 AzlC protein AbD4_03785 PF00436 Single-strand binding protein family AbD4_03786 PF07690 Major Facilitator Superfamily AbD4_03788 PF02581 Thiamine monophosphate synthase AbD4_03788 PF03070 TENA/THI-4/PQQC family AbD4_03788 PF08543 Phosphomethylpyrimidine kinase AbD4_03789 PF06942 GlpM protein AbD4_03791 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_03791 PF00107 Zinc-binding dehydrogenase AbD4_03792 PF16925 Tetracyclin repressor-like, C-terminal domain AbD4_03792 PF00440 Bacterial regulatory proteins, tetR family AbD4_03793 PF17755 UvrA DNA-binding domain AbD4_03793 PF17760 UvrA interaction domain AbD4_03794 PF00990 Diguanylate cyclase, GGDEF domain AbD4_03796 PF02028 BCCT, betaine/carnitine/choline family transporter AbD4_03798 PF00474 Sodium:solute symporter family AbD4_03799 PF04341 Protein of unknown function, DUF485 AbD4_03800 PF00672 HAMP domain AbD4_03800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03800 PF00512 His Kinase A (phospho-acceptor) domain AbD4_03800 PF01627 Hpt domain AbD4_03800 PF00072 Response regulator receiver domain AbD4_03802 PF00072 Response regulator receiver domain AbD4_03802 PF00196 Bacterial regulatory proteins, luxR family AbD4_03803 PF03358 NADPH-dependent FMN reductase AbD4_03804 PF00296 Luciferase-like monooxygenase AbD4_03805 PF01037 Lrp/AsnC ligand binding domain AbD4_03806 PF00857 Isochorismatase family AbD4_03807 PF00501 AMP-binding enzyme AbD4_03807 PF16177 Acetyl-coenzyme A synthetase N-terminus AbD4_03807 PF13193 AMP-binding enzyme C-terminal domain AbD4_03809 PF00924 Mechanosensitive ion channel AbD4_03810 PF04452 RNA methyltransferase AbD4_03811 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AbD4_03812 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AbD4_03815 PF00472 RF-1 domain AbD4_03815 PF03462 PCRF domain AbD4_03818 PF17768 RecJ OB domain AbD4_03818 PF01368 DHH family AbD4_03818 PF02272 DHHA1 domain AbD4_03819 PF01243 Pyridoxamine 5'-phosphate oxidase AbD4_03819 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AbD4_03820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AbD4_03820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AbD4_03820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AbD4_03820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AbD4_03821 PF00478 IMP dehydrogenase / GMP reductase domain AbD4_03821 PF00571 CBS domain AbD4_03822 PF03692 Putative zinc- or iron-chelating domain AbD4_03823 PF01613 Flavin reductase like domain AbD4_03823 PF00258 Flavodoxin AbD4_03824 PF07715 TonB-dependent Receptor Plug Domain AbD4_03824 PF00593 TonB dependent receptor AbD4_03825 PF01169 Uncharacterized protein family UPF0016 AbD4_03827 PF00364 Biotin-requiring enzyme AbD4_03827 PF02817 e3 binding domain AbD4_03827 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AbD4_03828 PF00456 Transketolase, thiamine diphosphate binding domain AbD4_03828 PF17831 Pyruvate dehydrogenase E1 component middle domain AbD4_03829 PF01551 Peptidase family M23 AbD4_03831 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AbD4_03832 PF12327 FtsZ family, C-terminal domain AbD4_03832 PF00091 Tubulin/FtsZ family, GTPase domain AbD4_03833 PF02491 SHS2 domain inserted in FTSA AbD4_03834 PF03799 Cell division protein FtsQ AbD4_03834 PF08478 POTRA domain, FtsQ-type AbD4_03835 PF07478 D-ala D-ala ligase C-terminus AbD4_03835 PF01820 D-ala D-ala ligase N-terminus AbD4_03836 PF02875 Mur ligase family, glutamate ligase domain AbD4_03836 PF01225 Mur ligase family, catalytic domain AbD4_03836 PF08245 Mur ligase middle domain AbD4_03837 PF04101 Glycosyltransferase family 28 C-terminal domain AbD4_03837 PF03033 Glycosyltransferase family 28 N-terminal domain AbD4_03838 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AbD4_03838 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AbD4_03840 PF00593 TonB dependent receptor AbD4_03840 PF07715 TonB-dependent Receptor Plug Domain AbD4_03842 PF00156 Phosphoribosyl transferase domain AbD4_03843 PF03372 Endonuclease/Exonuclease/phosphatase family AbD4_03844 PF03960 ArsC family AbD4_03846 PF07859 alpha/beta hydrolase fold AbD4_03847 PF07694 5TMR of 5TMR-LYT AbD4_03847 PF00990 Diguanylate cyclase, GGDEF domain AbD4_03848 PF11412 Disulphide bond corrector protein DsbC AbD4_03848 PF02683 Cytochrome C biogenesis protein transmembrane region AbD4_03854 PF00576 HIUase/Transthyretin family AbD4_03855 PF00860 Permease family AbD4_03857 PF01494 FAD binding domain AbD4_03858 PF03561 Allantoicase repeat AbD4_03859 PF04115 Ureidoglycolate lyase AbD4_03860 PF00106 short chain dehydrogenase AbD4_03861 PF00204 DNA gyrase B AbD4_03861 PF01751 Toprim domain AbD4_03861 PF00986 DNA gyrase B subunit, carboxyl terminus AbD4_03861 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03862 PF05728 Uncharacterised protein family (UPF0227) AbD4_03872 PF01476 LysM domain AbD4_03872 PF01510 N-acetylmuramoyl-L-alanine amidase AbD4_03872 PF01471 Putative peptidoglycan binding domain AbD4_03873 PF04717 Type VI secretion system, phage-baseplate injector AbD4_03873 PF13296 Putative type VI secretion system Rhs element Vgr AbD4_03873 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AbD4_03874 PF02600 Disulfide bond formation protein DsbB AbD4_03875 PF04262 Glutamate-cysteine ligase AbD4_03878 PF04286 Protein of unknown function (DUF445) AbD4_03879 PF00155 Aminotransferase class I and II AbD4_03880 PF01554 MatE AbD4_03881 PF00106 short chain dehydrogenase AbD4_03883 PF00486 Transcriptional regulatory protein, C terminal AbD4_03883 PF00072 Response regulator receiver domain AbD4_03884 PF11808 Phosphate regulon sensor protein PhoR AbD4_03884 PF00989 PAS fold AbD4_03884 PF00512 His Kinase A (phospho-acceptor) domain AbD4_03884 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AbD4_03886 PF02666 Phosphatidylserine decarboxylase AbD4_03887 PF00581 Rhodanese-like domain AbD4_03888 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AbD4_03888 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AbD4_03889 PF02580 D-Tyr-tRNA(Tyr) deacylase AbD4_03894 PF00925 GTP cyclohydrolase II AbD4_03894 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AbD4_03895 PF00885 6,7-dimethyl-8-ribityllumazine synthase AbD4_03896 PF01029 NusB family AbD4_03897 PF00586 AIR synthase related protein, N-terminal domain AbD4_03897 PF02769 AIR synthase related protein, C-terminal domain AbD4_03898 PF04608 Phosphatidylglycerophosphatase A AbD4_03899 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_03899 PF14602 Hexapeptide repeat of succinyl-transferase AbD4_03899 PF12804 MobA-like NTP transferase domain AbD4_03900 PF01380 SIS domain AbD4_03901 PF08721 TnsA endonuclease C terminal AbD4_03901 PF08722 TnsA endonuclease N terminal AbD4_03902 PF00665 Integrase core domain AbD4_03903 PF11426 Tn7 transposition regulator TnsC AbD4_03903 PF13401 AAA domain AbD4_03904 PF06527 TniQ AbD4_03904 PF15978 Tn7-like transposition protein D AbD4_03906 PF13005 zinc-finger binding domain of transposase IS66 AbD4_03906 PF13007 Transposase C of IS166 homeodomain AbD4_03906 PF13817 IS66 C-terminal element AbD4_03906 PF03050 Transposase IS66 family AbD4_03909 PF03050 Transposase IS66 family AbD4_03909 PF13007 Transposase C of IS166 homeodomain AbD4_03909 PF13005 zinc-finger binding domain of transposase IS66 AbD4_03909 PF13817 IS66 C-terminal element AbD4_03916 PF00664 ABC transporter transmembrane region AbD4_03916 PF00005 ABC transporter AbD4_03916 PF03412 Peptidase C39 family AbD4_03919 PF01554 MatE AbD4_03922 PF07715 TonB-dependent Receptor Plug Domain AbD4_03922 PF00593 TonB dependent receptor AbD4_03925 PF11426 Tn7 transposition regulator TnsC AbD4_03925 PF13401 AAA domain AbD4_03927 PF01654 Cytochrome bd terminal oxidase subunit I AbD4_03928 PF02322 Cytochrome bd terminal oxidase subunit II AbD4_03934 PF00581 Rhodanese-like domain AbD4_03935 PF01925 Sulfite exporter TauE/SafE AbD4_03936 PF00753 Metallo-beta-lactamase superfamily AbD4_03938 PF04143 Sulphur transport AbD4_03940 PF07683 Cobalamin synthesis protein cobW C-terminal domain AbD4_03940 PF02492 CobW/HypB/UreG, nucleotide-binding domain AbD4_03943 PF09190 DALR domain AbD4_03943 PF01406 tRNA synthetases class I (C) catalytic domain AbD4_03944 PF01475 Ferric uptake regulator family AbD4_03945 PF02649 Type I GTP cyclohydrolase folE2 AbD4_03946 PF01502 Phosphoribosyl-AMP cyclohydrolase AbD4_03947 PF00132 Bacterial transferase hexapeptide (six repeats) AbD4_03947 PF00101 Ribulose bisphosphate carboxylase, small chain AbD4_03948 PF01979 Amidohydrolase family AbD4_03949 PF03129 Anticodon binding domain AbD4_03949 PF02824 TGS domain AbD4_03949 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AbD4_03949 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AbD4_03950 PF03717 Penicillin-binding Protein dimerisation domain AbD4_03950 PF00905 Penicillin binding protein transpeptidase domain AbD4_03954 PF01177 Asp/Glu/Hydantoin racemase AbD4_03955 PF13419 Haloacid dehalogenase-like hydrolase AbD4_03957 PF00491 Arginase family AbD4_03958 PF01979 Amidohydrolase family AbD4_03959 PF00324 Amino acid permease AbD4_03960 PF00221 Aromatic amino acid lyase AbD4_03961 PF17391 Urocanase N-terminal domain AbD4_03961 PF17392 Urocanase C-terminal domain AbD4_03961 PF01175 Urocanase Rossmann-like domain AbD4_03962 PF05962 HutD AbD4_03963 PF00392 Bacterial regulatory proteins, gntR family AbD4_03963 PF07702 UTRA domain AbD4_03965 PF07683 Cobalamin synthesis protein cobW C-terminal domain AbD4_03965 PF02492 CobW/HypB/UreG, nucleotide-binding domain AbD4_03967 PF00324 Amino acid permease AbD4_03969 PF14497 Glutathione S-transferase, C-terminal domain AbD4_03969 PF02798 Glutathione S-transferase, N-terminal domain AbD4_03970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AbD4_03972 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AbD4_03973 PF04463 Protein of unknown function (DUF523) AbD4_03974 PF01554 MatE AbD4_03976 PF01758 Sodium Bile acid symporter family AbD4_03977 PF00857 Isochorismatase family AbD4_03978 PF00701 Dihydrodipicolinate synthetase family AbD4_03980 PF01259 SAICAR synthetase AbD4_03982 PF01226 Formate/nitrite transporter AbD4_03983 PF00004 ATPase family associated with various cellular activities (AAA) AbD4_03983 PF16193 AAA C-terminal domain AbD4_03983 PF12002 MgsA AAA+ ATPase C terminal AbD4_03984 PF07995 Glucose / Sorbosone dehydrogenase AbD4_03985 PF03692 Putative zinc- or iron-chelating domain AbD4_03986 PF07043 Protein of unknown function (DUF1328) AbD4_03989 PF10576 Iron-sulfur binding domain of endonuclease III AbD4_03989 PF00633 Helix-hairpin-helix motif AbD4_03989 PF00730 HhH-GPD superfamily base excision DNA repair protein AbD4_03989 PF14815 NUDIX domain AbD4_03991 PF13610 DDE domain AbD4_03993 PF03352 Methyladenine glycosylase AbD4_03994 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_03994 PF00107 Zinc-binding dehydrogenase AbD4_03995 PF00155 Aminotransferase class I and II AbD4_03995 PF00392 Bacterial regulatory proteins, gntR family AbD4_03997 PF03466 LysR substrate binding domain AbD4_03997 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_03998 PF00248 Aldo/keto reductase family AbD4_03999 PF07690 Major Facilitator Superfamily AbD4_04001 PF01113 Dihydrodipicolinate reductase, N-terminus AbD4_04001 PF05173 Dihydrodipicolinate reductase, C-terminus AbD4_04003 PF00684 DnaJ central domain AbD4_04003 PF01556 DnaJ C terminal domain AbD4_04003 PF00226 DnaJ domain AbD4_04005 PF00873 AcrB/AcrD/AcrF family AbD4_04006 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AbD4_04007 PF00440 Bacterial regulatory proteins, tetR family AbD4_04007 PF08361 MAATS-type transcriptional repressor, C-terminal region AbD4_04008 PF00311 Phosphoenolpyruvate carboxylase AbD4_04009 PF00860 Permease family AbD4_04010 PF03466 LysR substrate binding domain AbD4_04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AbD4_04013 PF00920 Dehydratase family AbD4_04014 PF00551 Formyl transferase AbD4_04014 PF02911 Formyl transferase, C-terminal domain AbD4_04015 PF01029 NusB family AbD4_04015 PF01189 16S rRNA methyltransferase RsmB/F AbD4_04017 PF00209 Sodium:neurotransmitter symporter family AbD4_p200001 PF13614 AAA domain AbD4_p200002 PF17762 HTH domain found in ParB protein AbD4_p200002 PF02195 ParB-like nuclease domain AbD4_p200003 PF00817 impB/mucB/samB family AbD4_p200003 PF11799 impB/mucB/samB family C-terminal domain AbD4_p200003 PF11798 IMS family HHH motif AbD4_p200003 PF13438 Domain of unknown function (DUF4113) AbD4_p200004 PF00717 Peptidase S24-like AbD4_p200011 PF04225 Opacity-associated protein A LysM-like domain AbD4_p200011 PF01551 Peptidase family M23 AbD4_p200024 PF13005 zinc-finger binding domain of transposase IS66 AbD4_p200024 PF03050 Transposase IS66 family AbD4_p200024 PF13817 IS66 C-terminal element AbD4_p200024 PF13007 Transposase C of IS166 homeodomain AbD4_p200050 PF13005 zinc-finger binding domain of transposase IS66 AbD4_p200050 PF13817 IS66 C-terminal element AbD4_p200050 PF03050 Transposase IS66 family AbD4_p200050 PF13007 Transposase C of IS166 homeodomain AbD4_p200062 PF13817 IS66 C-terminal element AbD4_p200062 PF13007 Transposase C of IS166 homeodomain AbD4_p200062 PF13005 zinc-finger binding domain of transposase IS66 AbD4_p200062 PF03050 Transposase IS66 family AbD4_p200068 PF01435 Peptidase family M48 AbD4_p200075 PF02899 Phage integrase, N-terminal SAM-like domain AbD4_p200075 PF00589 Phage integrase family AbD4_p200080 PF00665 Integrase core domain AbD4_p200083 PF00809 Pterin binding enzyme AbD4_p200084 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AbD4_p200084 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AbD4_p200084 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AbD4_p200084 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AbD4_p200086 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AbD4_p200087 PF01636 Phosphotransferase enzyme family AbD4_p200090 PF01396 Topoisomerase DNA binding C4 zinc finger AbD4_p200090 PF01751 Toprim domain AbD4_p200090 PF01131 DNA topoisomerase AbD4_p200095 PF13007 Transposase C of IS166 homeodomain AbD4_p200095 PF03050 Transposase IS66 family AbD4_p200095 PF13817 IS66 C-terminal element AbD4_p200095 PF13005 zinc-finger binding domain of transposase IS66 AbD4_p200107 PF13610 DDE domain AbD4_p200108 PF08240 Alcohol dehydrogenase GroES-like domain AbD4_p200108 PF00107 Zinc-binding dehydrogenase AbD4_p200109 PF02583 Metal-sensitive transcriptional repressor AbD4_p200133 PF00437 Type II/IV secretion system protein AbD4_p200133 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain