locus-tag	class	description
AbD4_00001	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AbD4_00002	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AbD4_00003	COG0596	Alpha beta hydrolase
AbD4_00008	COG0488	(ABC) transporter
AbD4_00009	COG0586	Pfam SNARE associated Golgi protein
AbD4_00011	COG0187	DNA topoisomerase II activity
AbD4_00013	COG0592	DNA-directed DNA polymerase activity
AbD4_00018	COG0706	membrane insertase activity
AbD4_00020	COG4974	Belongs to the 'phage' integrase family
AbD4_00055	COG1132	(ABC) transporter
AbD4_00060	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AbD4_00062	COG0675	Transposase, IS605 OrfB family
AbD4_00064	COG4372	Transposase
AbD4_00080	COG1230	cation diffusion facilitator family transporter
AbD4_00081	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AbD4_00085	COG0402	S-adenosylhomocysteine deaminase activity
AbD4_00087	COG0754	glutathionylspermidine amidase activity
AbD4_00089	COG0861	Integral membrane protein TerC family
AbD4_00090	COG0671	phosphoesterase, PA-phosphatase related
AbD4_00092	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AbD4_00095	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AbD4_00096	COG2951	lytic endotransglycosylase activity
AbD4_00102	COG0583	DNA-binding transcription factor activity
AbD4_00107	COG0657	acetylesterase activity
AbD4_00108	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AbD4_00118	COG1047	Peptidyl-prolyl cis-trans
AbD4_00120	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AbD4_00121	COG0196	riboflavin kinase activity
AbD4_00123	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AbD4_00124	COG1309	transcriptional regulator
AbD4_00125	COG1116	anion transmembrane transporter activity
AbD4_00126	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AbD4_00127	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AbD4_00128	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AbD4_00129	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AbD4_00133	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_00134	COG0546	phosphoglycolate phosphatase activity
AbD4_00145	COG3023	N-Acetylmuramoyl-L-alanine amidase
AbD4_00146	COG0728	peptidoglycan biosynthetic process
AbD4_00152	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
AbD4_00153	COG1086	Polysaccharide biosynthesis protein
AbD4_00154	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AbD4_00155	COG1083	cytidylyl-transferase
AbD4_00158	COG2089	acid synthase
AbD4_00159	COG2244	polysaccharide biosynthetic process
AbD4_00162	COG1216	Glycosyl transferase, family 2
AbD4_00163	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AbD4_00164	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AbD4_00167	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AbD4_00168	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AbD4_00170	COG2186	Transcriptional regulator
AbD4_00172	COG0277	FAD linked oxidase domain protein
AbD4_00173	COG1448	Aminotransferase
AbD4_00174	COG1802	Transcriptional regulator
AbD4_00177	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AbD4_00180	COG2963	transposase activity
AbD4_00182	COG4372	Transposase
AbD4_00200	COG0564	pseudouridine synthase activity
AbD4_00208	COG0251	oxidation-reduction process
AbD4_00209	COG1113	amino acid transport
AbD4_00210	COG1113	amino acid transport
AbD4_00214	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AbD4_00215	COG1960	acyl-CoA dehydrogenase activity
AbD4_00216	COG1024	Enoyl-CoA hydratase
AbD4_00217	COG1024	Enoyl-CoA hydratase
AbD4_00218	COG0477	Major facilitator Superfamily
AbD4_00219	COG3916	Acyl-homoserine-lactone synthase
AbD4_00221	COG2197	response regulator
AbD4_00223	COG1960	acyl-CoA dehydrogenase activity
AbD4_00224	COG3321	synthase
AbD4_00224	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
AbD4_00224	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AbD4_00224	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AbD4_00232	COG0271	Belongs to the BolA IbaG family
AbD4_00234	COG1192	Involved in chromosome partitioning
AbD4_00237	COG4372	Transposase
AbD4_00239	COG2963	transposase activity
AbD4_00240	COG0586	Pfam SNARE associated Golgi protein
AbD4_00241	COG2259	Doxx family
AbD4_00242	COG4399	Belongs to the UPF0754 family
AbD4_00243	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AbD4_00243	COG0519	Catalyzes the synthesis of GMP from XMP
AbD4_00252	COG0281	malic enzyme
AbD4_00253	COG2837	iron assimilation
AbD4_00254	COG1280	lysine exporter protein (LysE YggA)
AbD4_00255	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AbD4_00256	COG1121	(ABC) transporter
AbD4_00269	COG0386	Belongs to the glutathione peroxidase family
AbD4_00272	COG1309	transcriptional regulator
AbD4_00273	COG0697	spore germination
AbD4_00275	COG0758	DNA mediated transformation
AbD4_00282	COG1309	transcriptional regulator
AbD4_00289	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AbD4_00291	COG0655	NAD(P)H dehydrogenase (quinone) activity
AbD4_00299	COG4452	Inner membrane protein CreD
AbD4_00300	COG2205	protein histidine kinase activity
AbD4_00301	COG0745	RESPONSE REGULATOR receiver
AbD4_00302	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AbD4_00304	COG0477	Major facilitator Superfamily
AbD4_00306	COG1253	flavin adenine dinucleotide binding
AbD4_00307	COG3012	SEC-C Motif Domain Protein
AbD4_00308	COG2860	membrane
AbD4_00309	COG0477	Major facilitator Superfamily
AbD4_00311	COG0318	PFAM AMP-dependent synthetase and ligase
AbD4_00314	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AbD4_00317	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AbD4_00320	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AbD4_00321	COG0765	amino acid transport
AbD4_00322	COG1126	abc transporter atp-binding protein
AbD4_00327	COG0589	response to stress
AbD4_00328	COG0659	secondary active sulfate transmembrane transporter activity
AbD4_00330	COG0606	chelatase, subunit chli
AbD4_00332	COG0347	Belongs to the P(II) protein family
AbD4_00333	COG0004	ammonium transporteR
AbD4_00335	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AbD4_00335	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AbD4_00343	COG0795	lipopolysaccharide-transporting ATPase activity
AbD4_00344	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AbD4_00345	COG0793	Belongs to the peptidase S41A family
AbD4_00348	COG2197	response regulator
AbD4_00350	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AbD4_00352	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AbD4_00353	COG4974	Belongs to the 'phage' integrase family
AbD4_00358	COG0772	Belongs to the SEDS family
AbD4_00359	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AbD4_00360	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AbD4_00361	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AbD4_00366	COG0697	spore germination
AbD4_00367	COG1538	Outer membrane efflux protein
AbD4_00371	COG3275	phosphorelay sensor kinase activity
AbD4_00373	COG0181	hydroxymethylbilane synthase activity
AbD4_00382	COG1716	ATPase activity
AbD4_00383	COG0546	phosphoglycolate phosphatase activity
AbD4_00403	COG2056	Na+-H+ antiporter family
AbD4_00406	COG0326	Molecular chaperone. Has ATPase activity
AbD4_00409	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AbD4_00422	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AbD4_00423	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AbD4_00423	COG2169	Transcriptional regulator
AbD4_00429	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AbD4_00431	COG0497	DNA recombination
AbD4_00434	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AbD4_00436	COG0237	dephospho-CoA kinase activity
AbD4_00446	COG0195	Participates in both transcription termination and antitermination
AbD4_00449	COG1320	monovalent cation:proton antiporter activity
AbD4_00450	COG2212	antiporter activity
AbD4_00451	COG1863	multisubunit Na H antiporter MnhE subunit
AbD4_00452	COG0651	ATP synthesis coupled electron transport
AbD4_00453	COG1006	Multisubunit Na H antiporter MnhC subunit
AbD4_00454	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AbD4_00454	COG2111	Na H antiporter
AbD4_00457	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AbD4_00460	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AbD4_00463	COG2226	methyltransferase
AbD4_00467	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AbD4_00468	COG1074	ATP-dependent DNA helicase activity
AbD4_00469	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AbD4_00470	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AbD4_00473	COG0598	Magnesium transport protein CorA
AbD4_00474	COG0789	Transcriptional regulator
AbD4_00475	COG0484	heat shock protein binding
AbD4_00478	COG0475	glutathione-regulated potassium exporter activity
AbD4_00478	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AbD4_00479	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AbD4_00483	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AbD4_00485	COG4535	Mg2 and Co2 transporter CorC
AbD4_00486	COG0425	Belongs to the sulfur carrier protein TusA family
AbD4_00488	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AbD4_00488	COG0644	oxidoreductase
AbD4_00490	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AbD4_00493	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AbD4_00494	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AbD4_00496	COG0493	'glutamate synthase
AbD4_00496	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AbD4_00501	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AbD4_00504	COG0534	Mate efflux family protein
AbD4_00506	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AbD4_00507	COG4221	oxidoreductase activity
AbD4_00508	COG0583	DNA-binding transcription factor activity
AbD4_00511	COG0318	PFAM AMP-dependent synthetase and ligase
AbD4_00512	COG1530	ribonuclease E activity
AbD4_00515	COG0546	phosphoglycolate phosphatase activity
AbD4_00516	COG2378	regulation of single-species biofilm formation
AbD4_00517	COG0625	glutathione transferase activity
AbD4_00519	COG0583	DNA-binding transcription factor activity
AbD4_00530	COG0473	3-isopropylmalate dehydrogenase activity
AbD4_00541	COG1301	dicarboxylic acid transport
AbD4_00543	COG1560	Kdo2-lipid A biosynthetic process
AbD4_00544	COG1280	lysine exporter protein (LysE YggA)
AbD4_00546	COG0488	(ABC) transporter
AbD4_00547	COG2900	Belongs to the SlyX family
AbD4_00549	COG1733	regulation of RNA biosynthetic process
AbD4_00554	COG0210	DNA helicase
AbD4_00555	COG0724	RNA recognition motif
AbD4_00559	COG4651	solute:proton antiporter activity
AbD4_00559	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AbD4_00564	COG0788	formyltetrahydrofolate deformylase activity
AbD4_00585	COG2813	Specifically methylates the guanine in position
AbD4_00585	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AbD4_00587	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AbD4_00589	COG4774	siderophore transport
AbD4_00591	COG0740	serine-type endopeptidase activity
AbD4_00595	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AbD4_00595	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AbD4_00596	COG0857	belongs to the CobB CobQ family
AbD4_00596	COG0280	phosphate acetyltransferase
AbD4_00597	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AbD4_00599	COG0800	Aldolase
AbD4_00601	COG3265	gluconokinase activity
AbD4_00602	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_00604	COG2267	carboxylic ester hydrolase activity
AbD4_00607	COG0793	Belongs to the peptidase S41A family
AbD4_00614	COG1426	Protein conserved in bacteria
AbD4_00622	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AbD4_00624	COG1162	GTPase activity
AbD4_00625	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AbD4_00628	COG1538	Outer membrane efflux protein
AbD4_00629	COG1136	(ABC) transporter
AbD4_00629	COG0577	efflux transmembrane transporter activity
AbD4_00630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_00631	COG4372	Transposase
AbD4_00633	COG2963	transposase activity
AbD4_00639	COG0028	Belongs to the TPP enzyme family
AbD4_00640	COG0440	acetolactate synthase activity
AbD4_00652	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AbD4_00655	COG0084	hydrolase, TatD family'
AbD4_00658	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AbD4_00660	COG0583	DNA-binding transcription factor activity
AbD4_00662	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AbD4_00669	COG4372	Transposase
AbD4_00671	COG2963	transposase activity
AbD4_00683	COG2205	protein histidine kinase activity
AbD4_00684	COG2963	transposase activity
AbD4_00686	COG4372	Transposase
AbD4_00690	COG2132	Multicopper oxidase
AbD4_00692	COG0789	Transcriptional regulator
AbD4_00699	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AbD4_00702	COG0640	Transcriptional regulator
AbD4_00704	COG0798	PFAM Bile acid sodium symporter
AbD4_00705	COG2963	transposase activity
AbD4_00707	COG4372	Transposase
AbD4_00708	COG0431	NADPH-dependent FMN reductase
AbD4_00711	COG2814	Major facilitator Superfamily
AbD4_00713	COG0697	spore germination
AbD4_00719	COG3622	Belongs to the hyi family
AbD4_00720	COG2084	Dehydrogenase
AbD4_00721	COG1024	Enoyl-CoA hydratase
AbD4_00722	COG2205	protein histidine kinase activity
AbD4_00722	COG0784	Response regulator, receiver
AbD4_00722	COG5002	protein histidine kinase activity
AbD4_00726	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AbD4_00728	COG3956	TIGRFAM MazG family protein
AbD4_00729	COG1555	photosystem II stabilization
AbD4_00730	COG0617	tRNA 3'-terminal CCA addition
AbD4_00731	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AbD4_00735	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AbD4_00736	COG3028	Belongs to the UPF0307 family
AbD4_00737	COG0318	PFAM AMP-dependent synthetase and ligase
AbD4_00740	COG0625	glutathione transferase activity
AbD4_00741	COG1238	metal cluster binding
AbD4_00749	COG0072	phenylalanine-tRNA ligase activity
AbD4_00754	COG0248	Ppx GppA phosphatase
AbD4_00756	COG0037	tRNA processing
AbD4_00764	COG1764	response to oxidative stress
AbD4_00765	COG1846	Transcriptional regulator
AbD4_00767	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AbD4_00779	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AbD4_00780	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AbD4_00781	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AbD4_00783	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AbD4_00793	COG1214	PFAM Peptidase M22, glycoprotease
AbD4_00796	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AbD4_00798	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AbD4_00799	COG0561	phosphatase activity
AbD4_00801	COG2132	Multicopper oxidase
AbD4_00805	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AbD4_00806	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AbD4_00807	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AbD4_00813	COG1063	alcohol dehydrogenase
AbD4_00814	COG0583	DNA-binding transcription factor activity
AbD4_00815	COG1960	acyl-CoA dehydrogenase activity
AbD4_00816	COG2814	Major facilitator Superfamily
AbD4_00817	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AbD4_00819	COG1053	succinate dehydrogenase
AbD4_00820	COG0583	DNA-binding transcription factor activity
AbD4_00823	COG0583	DNA-binding transcription factor activity
AbD4_00829	COG0583	DNA-binding transcription factor activity
AbD4_00832	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AbD4_00834	COG1309	transcriptional regulator
AbD4_00838	COG0384	phenazine biosynthesis protein PhzF
AbD4_00839	COG4372	Transposase
AbD4_00841	COG2963	transposase activity
AbD4_00843	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AbD4_00846	COG0745	RESPONSE REGULATOR receiver
AbD4_00854	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AbD4_00860	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AbD4_00861	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AbD4_00865	COG0583	DNA-binding transcription factor activity
AbD4_00869	COG0668	transmembrane transport
AbD4_00871	COG2081	HI0933 family
AbD4_00872	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AbD4_00878	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AbD4_00878	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AbD4_00880	COG0489	protein tyrosine kinase activity
AbD4_00891	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AbD4_00893	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AbD4_00896	COG0730	response to heat
AbD4_00898	COG1196	nuclear chromosome segregation
AbD4_00902	COG2223	nitrite transmembrane transporter activity
AbD4_00903	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
AbD4_00904	COG1877	trehalose-phosphatase activity
AbD4_00905	COG2226	methyltransferase
AbD4_00905	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AbD4_00905	COG0596	Alpha beta hydrolase
AbD4_00908	COG4106	trans-aconitate 2-methyltransferase activity
AbD4_00911	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AbD4_00912	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AbD4_00913	COG0009	L-threonylcarbamoyladenylate synthase
AbD4_00914	COG3101	peptidyl-lysine hydroxylation
AbD4_00915	COG1399	metal-binding, possibly nucleic acid-binding protein
AbD4_00920	COG1652	LysM domain
AbD4_00921	COG0352	thiamine-phosphate diphosphorylase activity
AbD4_00921	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AbD4_00921	COG0351	phosphomethylpyrimidine kinase
AbD4_00923	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AbD4_00929	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AbD4_00934	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AbD4_00937	COG0358	DNA primase activity
AbD4_00939	COG0564	pseudouridine synthase activity
AbD4_00944	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AbD4_00947	COG0583	DNA-binding transcription factor activity
AbD4_00948	COG0473	3-isopropylmalate dehydrogenase activity
AbD4_00950	COG0657	acetylesterase activity
AbD4_00952	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_00956	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AbD4_00956	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AbD4_00959	COG1981	membrane
AbD4_00968	COG0456	acetyltransferase
AbD4_00970	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AbD4_00971	COG0492	ferredoxin-NADP+ reductase activity
AbD4_00972	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AbD4_00972	COG1674	ftsk spoiiie
AbD4_00973	COG1280	lysine exporter protein (LysE YggA)
AbD4_00975	COG2963	transposase activity
AbD4_00977	COG4372	Transposase
AbD4_00980	COG2894	cell division
AbD4_00983	COG0204	Acyl-transferase
AbD4_00984	COG2885	chlorophyll binding
AbD4_00985	COG0210	DNA helicase
AbD4_00987	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AbD4_00990	COG0121	glutamine amidotransferase
AbD4_00994	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AbD4_00995	COG0735	belongs to the Fur family
AbD4_01000	COG0420	3'-5' exonuclease activity
AbD4_01004	COG1090	epimerase
AbD4_01007	COG2050	protein possibly involved in aromatic compounds catabolism
AbD4_01009	COG2814	Major facilitator Superfamily
AbD4_01010	COG0405	Gamma-glutamyltransferase
AbD4_01023	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
AbD4_01025	COG0477	Major facilitator Superfamily
AbD4_01026	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AbD4_01028	COG1595	DNA-templated transcription, initiation
AbD4_01039	COG0531	amino acid
AbD4_01040	COG2040	homocysteine
AbD4_01045	COG1309	transcriptional regulator
AbD4_01046	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AbD4_01047	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AbD4_01049	COG1607	acyl-coa hydrolase
AbD4_01051	COG0523	cobalamin synthesis protein
AbD4_01053	COG4681	YaeQ
AbD4_01055	COG0726	polysaccharide deacetylase
AbD4_01055	COG1649	PFAM Uncharacterised BCR, COG1649
AbD4_01056	COG1215	transferase activity, transferring glycosyl groups
AbD4_01058	COG1024	Enoyl-CoA hydratase
AbD4_01061	COG1414	Transcriptional regulator
AbD4_01065	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01068	COG2271	Major facilitator Superfamily
AbD4_01070	COG2267	carboxylic ester hydrolase activity
AbD4_01071	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01074	COG0028	Belongs to the TPP enzyme family
AbD4_01076	COG0477	Major facilitator Superfamily
AbD4_01077	COG0242	peptide deformylase activity
AbD4_01078	COG2066	Belongs to the glutaminase family
AbD4_01079	COG2207	Transcriptional regulator
AbD4_01080	COG2223	nitrite transmembrane transporter activity
AbD4_01083	COG0583	DNA-binding transcription factor activity
AbD4_01084	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01085	COG2271	Major facilitator Superfamily
AbD4_01086	COG3959	Transketolase, thiamine diphosphate binding domain
AbD4_01087	COG3958	Transketolase
AbD4_01090	COG0306	phosphate transporter
AbD4_01094	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AbD4_01103	COG4181	ATPase activity
AbD4_01104	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AbD4_01109	COG0583	DNA-binding transcription factor activity
AbD4_01111	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AbD4_01112	COG1773	rubredoxin
AbD4_01122	COG2851	Citrate transporter
AbD4_01123	COG1253	flavin adenine dinucleotide binding
AbD4_01131	COG0804	urea catabolic process
AbD4_01133	COG0830	nickel cation binding
AbD4_01136	COG0742	ribosomal rna small subunit methyltransferase
AbD4_01137	COG0768	penicillin binding
AbD4_01141	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AbD4_01142	COG2878	Part of a membrane complex involved in electron transport
AbD4_01143	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AbD4_01145	COG3384	dioxygenase
AbD4_01149	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AbD4_01155	COG0006	proline dipeptidase activity
AbD4_01156	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AbD4_01157	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AbD4_01161	COG1279	arginine transmembrane transporter activity
AbD4_01162	COG0583	DNA-binding transcription factor activity
AbD4_01170	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AbD4_01171	COG1388	LysM domain
AbD4_01171	COG0741	lytic transglycosylase activity
AbD4_01171	COG1388	LysM domain
AbD4_01171	COG0741	lytic transglycosylase activity
AbD4_01173	COG4174	ABC transporter (Permease)
AbD4_01174	COG4239	(ABC) transporter, permease
AbD4_01175	COG4172	Belongs to the ABC transporter superfamily
AbD4_01179	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AbD4_01181	COG4251	negative regulation of phosphorylation
AbD4_01181	COG5001	Diguanylate cyclase
AbD4_01181	COG3706	GGDEF domain
AbD4_01181	COG2203	Gaf domain
AbD4_01182	COG2963	transposase activity
AbD4_01184	COG4372	Transposase
AbD4_01187	COG0446	pyridine nucleotide-disulphide oxidoreductase
AbD4_01187	COG1902	pentaerythritol trinitrate reductase activity
AbD4_01191	COG4372	Transposase
AbD4_01193	COG2963	transposase activity
AbD4_01196	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AbD4_01198	COG0583	DNA-binding transcription factor activity
AbD4_01199	COG2814	Major facilitator Superfamily
AbD4_01202	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01203	COG1454	alcohol dehydrogenase
AbD4_01204	COG3485	protocatechuate 3,4-dioxygenase
AbD4_01207	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AbD4_01208	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AbD4_01209	COG0183	Belongs to the thiolase family
AbD4_01216	COG1113	amino acid transport
AbD4_01218	COG0531	amino acid
AbD4_01222	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01226	COG1113	amino acid transport
AbD4_01229	COG0697	spore germination
AbD4_01230	COG2721	sulfolactate sulfo-lyase activity
AbD4_01231	COG2271	Major facilitator Superfamily
AbD4_01232	COG4948	Mandelate Racemase Muconate Lactonizing
AbD4_01234	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01235	COG2186	Transcriptional regulator
AbD4_01240	COG1960	acyl-CoA dehydrogenase activity
AbD4_01242	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01243	COG1024	Enoyl-CoA hydratase
AbD4_01244	COG2814	Major facilitator Superfamily
AbD4_01247	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AbD4_01250	COG1262	PFAM Formylglycine-generating sulfatase enzyme
AbD4_01259	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AbD4_01262	COG0583	DNA-binding transcription factor activity
AbD4_01263	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AbD4_01264	COG2072	flavoprotein involved in K transport
AbD4_01265	COG0300	oxidoreductase activity
AbD4_01267	COG1309	transcriptional regulator
AbD4_01268	COG1741	Belongs to the pirin family
AbD4_01271	COG2072	flavoprotein involved in K transport
AbD4_01273	COG2252	PERMEase
AbD4_01274	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AbD4_01275	COG3038	cytochrome b561
AbD4_01277	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AbD4_01279	COG0527	aspartate kinase activity
AbD4_01281	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AbD4_01283	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AbD4_01286	COG0667	Aldo Keto reductase
AbD4_01288	COG1765	OsmC-like protein
AbD4_01291	COG0542	response to heat
AbD4_01298	COG2885	chlorophyll binding
AbD4_01300	COG0625	glutathione transferase activity
AbD4_01301	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AbD4_01305	COG3634	alkyl hydroperoxide reductase activity
AbD4_01307	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AbD4_01309	COG0450	alkyl hydroperoxide reductase
AbD4_01310	COG1643	Atp-dependent helicase
AbD4_01313	COG2814	Major facilitator Superfamily
AbD4_01314	COG3135	benzoate transporter
AbD4_01315	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01316	COG0543	2 iron, 2 sulfur cluster binding
AbD4_01316	COG0633	Ferredoxin
AbD4_01317	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AbD4_01318	COG4638	Rieske (2fe-2S)
AbD4_01319	COG0583	DNA-binding transcription factor activity
AbD4_01321	COG2871	sodium ion transport
AbD4_01337	COG1570	exodeoxyribonuclease VII activity
AbD4_01344	COG1280	lysine exporter protein (LysE YggA)
AbD4_01345	COG1278	Cold shock
AbD4_01352	COG2814	Major facilitator Superfamily
AbD4_01381	COG3728	DNA packaging
AbD4_01381	COG5484	DNA packaging
AbD4_01410	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AbD4_01412	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AbD4_01413	COG1137	ATPase activity
AbD4_01417	COG1538	Outer membrane efflux protein
AbD4_01423	COG4122	O-methyltransferase activity
AbD4_01426	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AbD4_01429	COG1522	sequence-specific DNA binding
AbD4_01430	COG5006	permease, DMT superfamily
AbD4_01433	COG1560	Kdo2-lipid A biosynthetic process
AbD4_01434	COG0598	Magnesium transport protein CorA
AbD4_01437	COG2814	Major facilitator Superfamily
AbD4_01441	COG1250	3-hydroxyacyl-CoA dehydrogenase
AbD4_01446	COG0583	DNA-binding transcription factor activity
AbD4_01447	COG1914	H( )-stimulated, divalent metal cation uptake system
AbD4_01451	COG4770	biotin carboxylase activity
AbD4_01452	COG0038	chloride channel
AbD4_01453	COG2831	hemolysin activation secretion protein
AbD4_01454	COG3210	domain, Protein
AbD4_01456	COG1309	transcriptional regulator
AbD4_01458	COG1063	alcohol dehydrogenase
AbD4_01461	COG0439	Biotin carboxylase
AbD4_01462	COG2249	NAD(P)H dehydrogenase (quinone) activity
AbD4_01463	COG1733	regulation of RNA biosynthetic process
AbD4_01466	COG0864	Transcriptional regulator
AbD4_01468	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AbD4_01469	COG1116	anion transmembrane transporter activity
AbD4_01475	COG4372	Transposase
AbD4_01477	COG2963	transposase activity
AbD4_01505	COG0590	tRNA wobble adenosine to inosine editing
AbD4_01506	COG2807	transmembrane transport
AbD4_01509	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AbD4_01511	COG0789	Transcriptional regulator
AbD4_01514	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AbD4_01518	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AbD4_01523	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01524	COG0531	amino acid
AbD4_01525	COG1760	l-serine dehydratase
AbD4_01526	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01526	COG2030	dehydratase
AbD4_01527	COG3396	Phenylacetate-CoA oxygenase
AbD4_01528	COG3460	Phenylacetate-CoA oxygenase
AbD4_01529	COG3396	Phenylacetate-CoA oxygenase
AbD4_01530	COG2151	metal-sulfur cluster biosynthetic enzyme
AbD4_01531	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AbD4_01532	COG1024	Enoyl-CoA hydratase
AbD4_01533	COG1024	Enoyl-CoA hydratase
AbD4_01534	COG1250	3-hydroxyacyl-CoA dehydrogenase
AbD4_01535	COG0183	Belongs to the thiolase family
AbD4_01536	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
AbD4_01537	COG3327	negative regulation of DNA-templated transcription, initiation
AbD4_01539	COG2050	protein possibly involved in aromatic compounds catabolism
AbD4_01541	COG0556	nucleotide-excision repair
AbD4_01546	COG2207	Transcriptional regulator
AbD4_01549	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AbD4_01550	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AbD4_01551	COG2271	Major facilitator Superfamily
AbD4_01552	COG0753	catalase activity
AbD4_01553	COG3038	cytochrome b561
AbD4_01557	COG2267	carboxylic ester hydrolase activity
AbD4_01558	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AbD4_01559	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AbD4_01560	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01561	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AbD4_01563	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_01564	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AbD4_01565	COG0583	DNA-binding transcription factor activity
AbD4_01567	COG1414	Transcriptional regulator
AbD4_01568	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AbD4_01570	COG1840	ABC-type Fe3 transport system, periplasmic component
AbD4_01571	COG3842	ATPase activity
AbD4_01574	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AbD4_01575	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AbD4_01576	COG2814	Major facilitator Superfamily
AbD4_01577	COG1960	acyl-CoA dehydrogenase activity
AbD4_01580	COG1024	Enoyl-CoA hydratase
AbD4_01582	COG2814	Major facilitator Superfamily
AbD4_01584	COG0183	Belongs to the thiolase family
AbD4_01585	COG1250	3-hydroxyacyl-CoA dehydrogenase
AbD4_01586	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01587	COG1024	Enoyl-CoA hydratase
AbD4_01588	COG1960	acyl-CoA dehydrogenase activity
AbD4_01589	COG2814	Major facilitator Superfamily
AbD4_01590	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AbD4_01591	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AbD4_01593	COG2814	Major facilitator Superfamily
AbD4_01595	COG1960	acyl-CoA dehydrogenase activity
AbD4_01598	COG0583	DNA-binding transcription factor activity
AbD4_01600	COG4770	biotin carboxylase activity
AbD4_01601	COG1024	Enoyl-CoA hydratase
AbD4_01602	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AbD4_01603	COG1960	acyl-CoA dehydrogenase activity
AbD4_01604	COG1309	transcriptional regulator
AbD4_01605	COG0318	PFAM AMP-dependent synthetase and ligase
AbD4_01609	COG0583	DNA-binding transcription factor activity
AbD4_01619	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01623	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AbD4_01627	COG0784	Response regulator, receiver
AbD4_01627	COG2205	protein histidine kinase activity
AbD4_01634	COG0765	amino acid transport
AbD4_01635	COG0765	amino acid transport
AbD4_01637	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AbD4_01638	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AbD4_01640	COG1280	lysine exporter protein (LysE YggA)
AbD4_01641	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AbD4_01642	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AbD4_01643	COG1045	serine acetyltransferase
AbD4_01646	COG0583	DNA-binding transcription factor activity
AbD4_01647	COG0625	glutathione transferase activity
AbD4_01648	COG0625	glutathione transferase activity
AbD4_01649	COG0583	DNA-binding transcription factor activity
AbD4_01651	COG1346	cytolysis
AbD4_01656	COG0300	oxidoreductase activity
AbD4_01658	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
AbD4_01659	COG3052	prosthetic group binding
AbD4_01663	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AbD4_01667	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AbD4_01669	COG1294	oxidase, subunit
AbD4_01670	COG1271	oxidase subunit
AbD4_01675	COG0477	Major facilitator Superfamily
AbD4_01677	COG4521	taurine ABC transporter
AbD4_01678	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AbD4_01679	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AbD4_01680	COG2175	clavaminate synthase activity
AbD4_01682	COG1953	Uracil, thiamine, allantoin
AbD4_01684	COG0583	DNA-binding transcription factor activity
AbD4_01686	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AbD4_01689	COG0640	Transcriptional regulator
AbD4_01690	COG0798	PFAM Bile acid sodium symporter
AbD4_01691	COG0583	DNA-binding transcription factor activity
AbD4_01694	COG3634	alkyl hydroperoxide reductase activity
AbD4_01702	COG0436	Aminotransferase
AbD4_01704	COG0386	Belongs to the glutathione peroxidase family
AbD4_01707	COG4372	Transposase
AbD4_01709	COG2963	transposase activity
AbD4_01715	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AbD4_01720	COG0012	GTP binding
AbD4_01721	COG2011	ABC-type metal ion transport system permease component
AbD4_01722	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AbD4_01724	COG1464	Belongs to the NlpA lipoprotein family
AbD4_01730	COG0765	amino acid transport
AbD4_01731	COG0765	amino acid transport
AbD4_01732	COG1126	abc transporter atp-binding protein
AbD4_01734	COG1522	sequence-specific DNA binding
AbD4_01737	COG1309	transcriptional regulator
AbD4_01743	COG0583	DNA-binding transcription factor activity
AbD4_01745	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AbD4_01747	COG0697	spore germination
AbD4_01752	COG3121	Chaperone
AbD4_01753	COG3539	Fimbrial protein
AbD4_01758	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AbD4_01758	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AbD4_01767	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AbD4_01769	COG2353	YceI-like domain
AbD4_01771	COG3698	Phosphodiester glycosidase
AbD4_01774	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AbD4_01775	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AbD4_01775	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AbD4_01775	COG0506	proline dehydrogenase activity
AbD4_01777	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AbD4_01778	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AbD4_01782	COG1132	(ABC) transporter
AbD4_01783	COG3122	Protein conserved in bacteria
AbD4_01784	COG3619	membrane
AbD4_01786	COG0640	Transcriptional regulator
AbD4_01788	COG2850	peptidyl-arginine hydroxylation
AbD4_01789	COG0424	maF-like protein
AbD4_01793	COG0191	fructose-bisphosphate aldolase activity
AbD4_01794	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AbD4_01797	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AbD4_01799	COG1192	Involved in chromosome partitioning
AbD4_01800	COG1475	DNA binding
AbD4_01801	COG0811	peptide transport
AbD4_01803	COG1132	(ABC) transporter
AbD4_01804	COG1663	tetraacyldisaccharide 4'-kinase activity
AbD4_01808	COG0084	hydrolase, TatD family'
AbD4_01821	COG0776	regulation of translation
AbD4_01827	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AbD4_01828	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AbD4_01833	COG4372	Transposase
AbD4_01835	COG2963	transposase activity
AbD4_01838	COG4166	transmembrane transport
AbD4_01841	COG0339	signal peptide processing
AbD4_01843	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AbD4_01850	COG0702	epimerase
AbD4_01851	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AbD4_01855	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AbD4_01861	COG0316	Belongs to the HesB IscA family
AbD4_01862	COG0822	iron-sulfur transferase activity
AbD4_01867	COG0776	regulation of translation
AbD4_01868	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AbD4_01869	COG2207	Transcriptional regulator
AbD4_01870	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AbD4_01871	COG1960	acyl-CoA dehydrogenase activity
AbD4_01872	COG1960	acyl-CoA dehydrogenase activity
AbD4_01875	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AbD4_01879	COG4264	IucA IucC family
AbD4_01880	COG4264	IucA IucC family
AbD4_01882	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AbD4_01888	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AbD4_01891	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AbD4_01892	COG0406	alpha-ribazole phosphatase activity
AbD4_01895	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AbD4_01896	COG0730	response to heat
AbD4_01900	COG4773	Receptor
AbD4_01901	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AbD4_01904	COG1131	(ABC) transporter
AbD4_01905	COG0842	Transport permease protein
AbD4_01906	COG0842	Transport permease protein
AbD4_01917	COG2226	methyltransferase
AbD4_01922	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AbD4_01929	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AbD4_01931	COG0133	tryptophan synthase activity
AbD4_01934	COG3706	GGDEF domain
AbD4_01937	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AbD4_01938	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AbD4_01939	COG0022	dehydrogenase e1 component
AbD4_01940	COG0508	dehydrogenase complex catalyzes the overall conversion of
AbD4_01941	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AbD4_01943	COG1063	alcohol dehydrogenase
AbD4_01944	COG3781	membrane
AbD4_01946	COG3453	Protein conserved in bacteria
AbD4_01946	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AbD4_01948	COG0730	response to heat
AbD4_01951	COG3708	Transcriptional regulator
AbD4_01951	COG2207	Transcriptional regulator
AbD4_01952	COG1733	regulation of RNA biosynthetic process
AbD4_01953	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AbD4_01955	COG2188	Transcriptional regulator
AbD4_01958	COG4521	taurine ABC transporter
AbD4_01959	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AbD4_01963	COG0477	Major facilitator Superfamily
AbD4_01965	COG1027	Aspartate ammonia-lyase
AbD4_01968	COG0583	DNA-binding transcription factor activity
AbD4_01969	COG0583	DNA-binding transcription factor activity
AbD4_01970	COG0183	Belongs to the thiolase family
AbD4_01971	COG2031	fatty acid transporter
AbD4_01974	COG0583	DNA-binding transcription factor activity
AbD4_01978	COG1309	transcriptional regulator
AbD4_01980	COG2610	gluconate transmembrane transporter activity
AbD4_01981	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01982	COG2207	Transcriptional regulator
AbD4_01985	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01987	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AbD4_01991	COG0543	2 iron, 2 sulfur cluster binding
AbD4_01991	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AbD4_01992	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AbD4_01993	COG4638	Rieske (2fe-2S)
AbD4_01995	COG0725	ABC transporter, periplasmic molybdate-binding protein
AbD4_01996	COG4149	molybdate abc transporter
AbD4_01997	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AbD4_01998	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_01999	COG3433	isochorismatase activity
AbD4_01999	COG1535	isochorismatase
AbD4_02011	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AbD4_02014	COG0753	catalase activity
AbD4_02016	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AbD4_02020	COG3539	Fimbrial protein
AbD4_02025	COG0747	negative chemotaxis
AbD4_02026	COG0601	transmembrane transport
AbD4_02027	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AbD4_02031	COG1132	(ABC) transporter
AbD4_02032	COG1132	(ABC) transporter
AbD4_02035	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AbD4_02038	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AbD4_02041	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AbD4_02043	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AbD4_02044	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AbD4_02045	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AbD4_02051	COG4771	TonB-dependent receptor
AbD4_02052	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AbD4_02055	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AbD4_02056	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_02057	COG0745	RESPONSE REGULATOR receiver
AbD4_02058	COG2205	protein histidine kinase activity
AbD4_02060	COG2207	Transcriptional regulator
AbD4_02063	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_02066	COG4372	Transposase
AbD4_02068	COG2963	transposase activity
AbD4_02074	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AbD4_02085	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AbD4_02089	COG1120	ATPase activity
AbD4_02090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AbD4_02091	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AbD4_02094	COG1064	alcohol dehydrogenase
AbD4_02097	COG2207	Transcriptional regulator
AbD4_02098	COG2084	Dehydrogenase
AbD4_02100	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AbD4_02101	COG0583	DNA-binding transcription factor activity
AbD4_02103	COG0129	dihydroxy-acid dehydratase activity
AbD4_02104	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_02107	COG1566	PFAM secretion protein HlyD family protein
AbD4_02109	COG2271	Major facilitator Superfamily
AbD4_02112	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AbD4_02117	COG0583	DNA-binding transcription factor activity
AbD4_02120	COG2188	Transcriptional regulator
AbD4_02128	COG4993	Dehydrogenase
AbD4_02129	COG1733	regulation of RNA biosynthetic process
AbD4_02132	COG2259	Doxx family
AbD4_02133	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AbD4_02136	COG4372	Transposase
AbD4_02138	COG2963	transposase activity
AbD4_02141	COG2963	transposase activity
AbD4_02143	COG4372	Transposase
AbD4_02149	COG1309	transcriptional regulator
AbD4_02155	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AbD4_02157	COG0446	pyridine nucleotide-disulphide oxidoreductase
AbD4_02157	COG1902	pentaerythritol trinitrate reductase activity
AbD4_02158	COG1846	Transcriptional regulator
AbD4_02163	COG0753	catalase activity
AbD4_02166	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_02169	COG3162	membrane
AbD4_02171	COG3829	transcription factor binding
AbD4_02172	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_02173	COG1960	acyl-CoA dehydrogenase activity
AbD4_02176	COG3231	kanamycin kinase activity
AbD4_02177	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_02181	COG2186	Transcriptional regulator
AbD4_02183	COG0583	DNA-binding transcription factor activity
AbD4_02184	COG4948	Mandelate Racemase Muconate Lactonizing
AbD4_02185	COG4829	muconolactone delta-isomerase
AbD4_02187	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AbD4_02188	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AbD4_02189	COG0183	Belongs to the thiolase family
AbD4_02190	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AbD4_02191	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_02193	COG3733	amine oxidase
AbD4_02195	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AbD4_02197	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_02199	COG4638	Rieske (2fe-2S)
AbD4_02203	COG0154	amidase activity
AbD4_02206	COG2814	Major facilitator Superfamily
AbD4_02211	COG1960	acyl-CoA dehydrogenase activity
AbD4_02212	COG0583	DNA-binding transcription factor activity
AbD4_02213	COG1414	Transcriptional regulator
AbD4_02216	COG2391	methyltransferase activity
AbD4_02218	COG4993	Dehydrogenase
AbD4_02219	COG3659	wide pore channel activity
AbD4_02220	COG3420	alginic acid biosynthetic process
AbD4_02221	COG0710	3-dehydroquinate dehydratase activity
AbD4_02222	COG3485	protocatechuate 3,4-dioxygenase
AbD4_02223	COG3485	protocatechuate 3,4-dioxygenase
AbD4_02224	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AbD4_02225	COG2271	Major facilitator Superfamily
AbD4_02226	COG0596	Alpha beta hydrolase
AbD4_02227	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AbD4_02228	COG0183	Belongs to the thiolase family
AbD4_02229	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AbD4_02230	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AbD4_02232	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AbD4_02233	COG2323	membrane
AbD4_02240	COG4372	Transposase
AbD4_02242	COG2963	transposase activity
AbD4_02249	COG0446	pyridine nucleotide-disulphide oxidoreductase
AbD4_02249	COG1902	pentaerythritol trinitrate reductase activity
AbD4_02254	COG0542	response to heat
AbD4_02255	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AbD4_02261	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AbD4_02262	COG0569	domain protein
AbD4_02263	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AbD4_02266	COG4774	siderophore transport
AbD4_02267	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AbD4_02269	COG1585	Membrane protein implicated in regulation of membrane protease activity
AbD4_02272	COG1294	oxidase, subunit
AbD4_02273	COG4890	Cyd operon protein YbgT
AbD4_02275	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AbD4_02277	COG0552	protein localization to endoplasmic reticulum
AbD4_02282	COG0516	GMP reductase activity
AbD4_02282	COG0517	IMP dehydrogenase activity
AbD4_02283	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AbD4_02284	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AbD4_02286	COG0583	DNA-binding transcription factor activity
AbD4_02287	COG0024	Methionine aminopeptidase
AbD4_02291	COG2963	transposase activity
AbD4_02293	COG4372	Transposase
AbD4_02296	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AbD4_02296	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AbD4_02297	COG1105	Belongs to the carbohydrate kinase PfkB family
AbD4_02298	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AbD4_02298	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AbD4_02298	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AbD4_02301	COG3300	MHYT domain
AbD4_02301	COG5001	Diguanylate cyclase
AbD4_02304	COG2135	peptidase activity
AbD4_02305	COG0659	secondary active sulfate transmembrane transporter activity
AbD4_02308	COG1113	amino acid transport
AbD4_02310	COG1522	sequence-specific DNA binding
AbD4_02315	COG1011	Hydrolase
AbD4_02316	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AbD4_02318	COG2137	regulation of response to DNA damage stimulus
AbD4_02320	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AbD4_02327	COG0575	Belongs to the CDS family
AbD4_02328	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AbD4_02332	COG3852	Histidine kinase
AbD4_02333	COG2204	response regulator
AbD4_02344	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AbD4_02345	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AbD4_02349	COG0697	spore germination
AbD4_02350	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AbD4_02352	COG0303	'Molybdopterin
AbD4_02353	COG0315	cyclic pyranopterin monophosphate synthase activity
AbD4_02353	COG0521	Mo-molybdopterin cofactor biosynthetic process
AbD4_02356	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AbD4_02357	COG0243	molybdopterin cofactor binding
AbD4_02359	COG0243	molybdopterin cofactor binding
AbD4_02360	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AbD4_02361	COG2146	nitrite reductase [NAD(P)H] activity
AbD4_02361	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AbD4_02363	COG0745	RESPONSE REGULATOR receiver
AbD4_02364	COG1116	anion transmembrane transporter activity
AbD4_02364	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AbD4_02367	COG0511	ligase activity, forming carbon-carbon bonds
AbD4_02370	COG2814	Major facilitator Superfamily
AbD4_02385	COG2314	TM2 domain
AbD4_02400	COG3566	protein conserved in bacteria
AbD4_02404	COG3567	Phage-associated protein, HI1409 family
AbD4_02405	COG5410	chromosome segregation
AbD4_02421	COG4197	protein conserved in bacteria, prophage-related
AbD4_02422	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AbD4_02438	COG0069	glutamate synthase activity
AbD4_02442	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AbD4_02444	COG1454	alcohol dehydrogenase
AbD4_02445	COG0824	Thioesterase
AbD4_02447	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AbD4_02452	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AbD4_02453	COG2030	dehydratase
AbD4_02455	COG0183	Belongs to the thiolase family
AbD4_02457	COG0583	DNA-binding transcription factor activity
AbD4_02458	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AbD4_02460	COG1522	sequence-specific DNA binding
AbD4_02461	COG3135	benzoate transporter
AbD4_02463	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AbD4_02467	COG0589	response to stress
AbD4_02468	COG0488	(ABC) transporter
AbD4_02473	COG4773	Receptor
AbD4_02479	COG0668	transmembrane transport
AbD4_02487	COG0583	DNA-binding transcription factor activity
AbD4_02488	COG2814	Major facilitator Superfamily
AbD4_02489	COG2814	Major facilitator Superfamily
AbD4_02490	COG0446	pyridine nucleotide-disulphide oxidoreductase
AbD4_02491	COG3384	dioxygenase
AbD4_02492	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_02494	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
AbD4_02495	COG4638	Rieske (2fe-2S)
AbD4_02496	COG0583	DNA-binding transcription factor activity
AbD4_02500	COG4569	acetaldehyde dehydrogenase (acetylating) activity
AbD4_02501	COG3971	2-oxopent-4-enoate hydratase activity
AbD4_02503	COG2271	Major facilitator Superfamily
AbD4_02504	COG1234	tRNA 3'-trailer cleavage
AbD4_02506	COG2963	transposase activity
AbD4_02508	COG4372	Transposase
AbD4_02515	COG4372	Transposase
AbD4_02517	COG2963	transposase activity
AbD4_02518	COG2963	transposase activity
AbD4_02520	COG4372	Transposase
AbD4_02521	COG1538	Outer membrane efflux protein
AbD4_02523	COG2885	chlorophyll binding
AbD4_02523	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AbD4_02532	COG1605	Chorismate mutase
AbD4_02536	COG0308	aminopeptidase N
AbD4_02540	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AbD4_02542	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AbD4_02543	COG1454	alcohol dehydrogenase
AbD4_02547	COG0531	amino acid
AbD4_02548	COG4303	Ethanolamine ammonia lyase large subunit
AbD4_02549	COG4302	ethanolamine ammonia-lyase activity
AbD4_02550	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AbD4_02550	COG0519	Catalyzes the synthesis of GMP from XMP
AbD4_02551	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AbD4_02556	COG0697	spore germination
AbD4_02557	COG1923	regulation of RNA biosynthetic process
AbD4_02559	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AbD4_02560	COG0802	atpase or kinase
AbD4_02564	COG1187	pseudouridine synthase activity
AbD4_02567	COG0583	DNA-binding transcription factor activity
AbD4_02570	COG2814	Major facilitator Superfamily
AbD4_02571	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AbD4_02577	COG0729	surface antigen
AbD4_02581	COG0174	glutamine synthetase
AbD4_02582	COG0745	RESPONSE REGULATOR receiver
AbD4_02583	COG2205	protein histidine kinase activity
AbD4_02585	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AbD4_02586	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AbD4_02587	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AbD4_02593	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AbD4_02594	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AbD4_02595	COG1960	acyl-CoA dehydrogenase activity
AbD4_02601	COG0583	DNA-binding transcription factor activity
AbD4_02604	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AbD4_02606	COG3658	cytochrome
AbD4_02607	COG1215	transferase activity, transferring glycosyl groups
AbD4_02608	COG1649	PFAM Uncharacterised BCR, COG1649
AbD4_02608	COG0726	polysaccharide deacetylase
AbD4_02610	COG2963	transposase activity
AbD4_02612	COG4372	Transposase
AbD4_02617	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AbD4_02618	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AbD4_02620	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AbD4_02625	COG0305	Participates in initiation and elongation during chromosome replication
AbD4_02626	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AbD4_02628	COG1305	Transglutaminase-like
AbD4_02630	COG2308	Evidence 4 Homologs of previously reported genes of
AbD4_02636	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AbD4_02637	COG0138	bifunctional purine biosynthesis protein purh
AbD4_02638	COG0151	Belongs to the GarS family
AbD4_02639	COG1464	Belongs to the NlpA lipoprotein family
AbD4_02640	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AbD4_02641	COG2011	ABC-type metal ion transport system permease component
AbD4_02642	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AbD4_02645	COG2963	transposase activity
AbD4_02647	COG4372	Transposase
AbD4_02648	COG1301	dicarboxylic acid transport
AbD4_02653	COG2814	Major facilitator Superfamily
AbD4_02656	COG1309	transcriptional regulator
AbD4_02660	COG1794	racemase activity, acting on amino acids and derivatives
AbD4_02661	COG0492	ferredoxin-NADP+ reductase activity
AbD4_02661	COG3118	belongs to the thioredoxin family
AbD4_02664	COG3008	intermembrane lipid transfer
AbD4_02664	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AbD4_02665	COG2995	paraquat-inducible protein a
AbD4_02671	COG1051	belongs to the nudix hydrolase family
AbD4_02672	COG0477	Major facilitator Superfamily
AbD4_02682	COG2186	Transcriptional regulator
AbD4_02684	COG0786	glutamate:sodium symporter activity
AbD4_02685	COG3243	poly(R)-hydroxyalkanoic acid synthase
AbD4_02690	COG3111	PFAM Bacterial OB fold (BOF) protein
AbD4_02692	COG2226	methyltransferase
AbD4_02707	COG3210	domain, Protein
AbD4_02707	COG3210	domain, Protein
AbD4_02708	COG2831	hemolysin activation secretion protein
AbD4_02713	COG0515	serine threonine protein kinase
AbD4_02713	COG2815	serine threonine protein kinase
AbD4_02719	COG1610	YqeY-like protein
AbD4_02720	COG4783	chaperone-mediated protein folding
AbD4_02725	COG1286	toxin biosynthetic process
AbD4_02731	COG0778	Nitroreductase
AbD4_02733	COG0513	Belongs to the DEAD box helicase family
AbD4_02737	COG2363	Small membrane protein
AbD4_02743	COG4650	regulator
AbD4_02744	COG1234	tRNA 3'-trailer cleavage
AbD4_02745	COG1690	Belongs to the RtcB family
AbD4_02749	COG2195	Cleaves the N-terminal amino acid of tripeptides
AbD4_02751	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AbD4_02753	COG2819	hydrolase of the alpha beta superfamily
AbD4_02754	COG1960	acyl-CoA dehydrogenase activity
AbD4_02755	COG1301	dicarboxylic acid transport
AbD4_02756	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AbD4_02757	COG3139	Protein of unknown function (DUF1315)
AbD4_02758	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AbD4_02759	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AbD4_02761	COG0494	nUDIX hydrolase
AbD4_02763	COG0642	Histidine kinase
AbD4_02766	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AbD4_02770	COG1720	tRNA m6t6A37 methyltransferase activity
AbD4_02773	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AbD4_02774	COG0826	peptidase U32
AbD4_02775	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AbD4_02777	COG4598	ABC transporter
AbD4_02778	COG4160	amino acid transport
AbD4_02779	COG4215	(ABC) transporter
AbD4_02783	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_02855	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AbD4_02864	COG0582	viral genome integration into host DNA
AbD4_02865	COG1131	(ABC) transporter
AbD4_02866	COG0842	Transport permease protein
AbD4_02869	COG0772	Belongs to the SEDS family
AbD4_02870	COG2951	lytic endotransglycosylase activity
AbD4_02876	COG2963	transposase activity
AbD4_02878	COG4372	Transposase
AbD4_02879	COG2207	Transcriptional regulator
AbD4_02882	COG0052	Belongs to the universal ribosomal protein uS2 family
AbD4_02883	COG0024	Methionine aminopeptidase
AbD4_02885	COG2223	nitrite transmembrane transporter activity
AbD4_02888	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AbD4_02889	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AbD4_02890	COG1960	acyl-CoA dehydrogenase activity
AbD4_02893	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AbD4_02894	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AbD4_02895	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AbD4_02899	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AbD4_02900	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AbD4_02901	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AbD4_02908	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AbD4_02910	COG0174	glutamine synthetase
AbD4_02913	COG0512	Glutamine amidotransferase of anthranilate synthase
AbD4_02914	COG0308	aminopeptidase N
AbD4_02918	COG2840	Smr protein MutS2
AbD4_02920	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AbD4_02922	COG0302	gtp cyclohydrolase
AbD4_02926	COG3739	integral membrane protein
AbD4_02929	COG1169	isochorismate synthase
AbD4_02930	COG2977	Belongs to the P-Pant transferase superfamily
AbD4_02931	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
AbD4_02932	COG1132	(ABC) transporter
AbD4_02933	COG1132	(ABC) transporter
AbD4_02936	COG1535	isochorismatase
AbD4_02936	COG3433	isochorismatase activity
AbD4_02937	COG1021	2,3-dihydroxybenzoate-AMP ligase
AbD4_02938	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AbD4_02940	COG4774	siderophore transport
AbD4_02941	COG4607	ABC-type enterochelin transport system periplasmic component
AbD4_02942	COG4604	ABC transporter, ATP-binding protein
AbD4_02943	COG4605	iron ion homeostasis
AbD4_02944	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AbD4_02946	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AbD4_02950	COG2964	Protein conserved in bacteria
AbD4_02952	COG1741	Belongs to the pirin family
AbD4_02961	COG2879	small protein
AbD4_02962	COG1966	Carbon starvation protein
AbD4_02967	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AbD4_02971	COG2211	Major facilitator Superfamily
AbD4_02972	COG1067	ATP-dependent peptidase activity
AbD4_02973	COG0583	DNA-binding transcription factor activity
AbD4_02978	COG1686	Belongs to the peptidase S11 family
AbD4_02979	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AbD4_02986	COG0616	signal peptide processing
AbD4_02987	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AbD4_02989	COG0573	inorganic phosphate transmembrane transporter activity
AbD4_02990	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AbD4_02991	COG1113	amino acid transport
AbD4_02992	COG3961	Belongs to the TPP enzyme family
AbD4_02993	COG1522	sequence-specific DNA binding
AbD4_02995	COG0076	glutamate decarboxylase activity
AbD4_02996	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AbD4_02998	COG1309	transcriptional regulator
AbD4_03001	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AbD4_03008	COG0352	thiamine-phosphate diphosphorylase activity
AbD4_03013	COG1203	CRISPR-associated helicase, Cas3
AbD4_03019	COG0612	Peptidase, M16
AbD4_03021	COG1823	symporter activity
AbD4_03022	COG0583	DNA-binding transcription factor activity
AbD4_03023	COG0477	Major facilitator Superfamily
AbD4_03027	COG1187	pseudouridine synthase activity
AbD4_03030	COG1686	Belongs to the peptidase S11 family
AbD4_03031	COG1252	NADH dehydrogenase
AbD4_03033	COG0415	Belongs to the DNA photolyase family
AbD4_03036	COG1215	transferase activity, transferring glycosyl groups
AbD4_03042	COG2070	2-Nitropropane dioxygenase
AbD4_03053	COG0556	nucleotide-excision repair
AbD4_03057	COG0436	Aminotransferase
AbD4_03062	COG4221	oxidoreductase activity
AbD4_03064	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AbD4_03065	COG1381	Involved in DNA repair and RecF pathway recombination
AbD4_03067	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AbD4_03070	COG0681	Belongs to the peptidase S26 family
AbD4_03073	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AbD4_03077	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AbD4_03078	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AbD4_03079	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AbD4_03081	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AbD4_03082	COG4208	sulfate ABC transporter
AbD4_03083	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AbD4_03084	COG0583	DNA-binding transcription factor activity
AbD4_03085	COG4625	pathogenesis
AbD4_03088	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AbD4_03091	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AbD4_03093	COG1051	belongs to the nudix hydrolase family
AbD4_03093	COG1056	cytidyltransferase-related domain
AbD4_03094	COG1024	Enoyl-CoA hydratase
AbD4_03097	COG2814	Major facilitator Superfamily
AbD4_03098	COG0047	phosphoribosylformylglycinamidine synthase activity
AbD4_03098	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AbD4_03102	COG1473	amidohydrolase
AbD4_03103	COG0824	Thioesterase
AbD4_03107	COG0823	Involved in the tonB-independent uptake of proteins
AbD4_03111	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AbD4_03116	COG2963	transposase activity
AbD4_03118	COG4372	Transposase
AbD4_03122	COG0628	permease
AbD4_03124	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AbD4_03125	COG0596	Alpha beta hydrolase
AbD4_03126	COG0616	signal peptide processing
AbD4_03126	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AbD4_03128	COG0658	competence protein
AbD4_03128	COG2333	competence protein COMEC
AbD4_03129	COG1136	(ABC) transporter
AbD4_03130	COG4591	ABC-type transport system involved in lipoprotein release permease component
AbD4_03137	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_03141	COG0463	Glycosyl transferase, family 2
AbD4_03147	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AbD4_03148	COG1280	lysine exporter protein (LysE YggA)
AbD4_03150	COG0019	diaminopimelate decarboxylase activity
AbD4_03152	COG1113	amino acid transport
AbD4_03155	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AbD4_03157	COG3339	Conserved Protein
AbD4_03158	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AbD4_03159	COG0243	molybdopterin cofactor binding
AbD4_03160	COG1929	Belongs to the glycerate kinase type-1 family
AbD4_03163	COG0778	Nitroreductase
AbD4_03169	COG3811	Belongs to the UPF0386 family
AbD4_03171	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AbD4_03174	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AbD4_03178	COG0741	lytic transglycosylase activity
AbD4_03182	COG0584	glycerophosphoryl diester phosphodiesterase
AbD4_03187	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AbD4_03188	COG1597	lipid kinase activity
AbD4_03191	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AbD4_03192	COG0477	Major facilitator Superfamily
AbD4_03202	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AbD4_03203	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AbD4_03208	COG0505	Belongs to the CarA family
AbD4_03212	COG0589	response to stress
AbD4_03215	COG2843	Capsule synthesis protein
AbD4_03217	COG4372	Transposase
AbD4_03219	COG2963	transposase activity
AbD4_03223	COG2321	neutral zinc metallopeptidase
AbD4_03224	COG2354	Protein conserved in bacteria
AbD4_03228	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AbD4_03231	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AbD4_03232	COG1053	succinate dehydrogenase
AbD4_03233	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AbD4_03234	COG2009	succinate dehydrogenase
AbD4_03241	COG2921	Belongs to the UPF0250 family
AbD4_03242	COG0321	lipoyl(octanoyl) transferase activity
AbD4_03245	COG0531	amino acid
AbD4_03247	COG1733	regulation of RNA biosynthetic process
AbD4_03248	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AbD4_03249	COG1648	precorrin-2 dehydrogenase activity
AbD4_03249	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AbD4_03252	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AbD4_03258	COG0671	phosphoesterase, PA-phosphatase related
AbD4_03259	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_03261	COG1538	Outer membrane efflux protein
AbD4_03262	COG0393	Putative heavy-metal-binding
AbD4_03263	COG0393	Putative heavy-metal-binding
AbD4_03265	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_03267	COG0525	valine-tRNA ligase activity
AbD4_03271	COG0583	DNA-binding transcription factor activity
AbD4_03272	COG0004	ammonium transporteR
AbD4_03274	COG0642	Histidine kinase
AbD4_03275	COG0745	RESPONSE REGULATOR receiver
AbD4_03276	COG2194	sulfuric ester hydrolase activity
AbD4_03277	COG2963	transposase activity
AbD4_03279	COG4372	Transposase
AbD4_03284	COG1752	Esterase of the alpha-beta hydrolase superfamily
AbD4_03287	COG2315	Protein conserved in bacteria
AbD4_03288	COG0142	geranyltranstransferase activity
AbD4_03289	COG2828	Protein conserved in bacteria
AbD4_03290	COG1113	amino acid transport
AbD4_03294	COG2207	Transcriptional regulator
AbD4_03299	COG2249	NAD(P)H dehydrogenase (quinone) activity
AbD4_03301	COG0560	Phosphoserine phosphatase
AbD4_03303	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AbD4_03305	COG1530	ribonuclease E activity
AbD4_03306	COG0424	maF-like protein
AbD4_03307	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AbD4_03308	COG1792	Involved in formation and maintenance of cell shape
AbD4_03309	COG1077	Cell shape determining protein MreB Mrl
AbD4_03310	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AbD4_03312	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AbD4_03317	COG3590	peptidase
AbD4_03318	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AbD4_03319	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AbD4_03320	COG1752	Esterase of the alpha-beta hydrolase superfamily
AbD4_03321	COG1115	amino acid carrier protein
AbD4_03325	COG2814	Major facilitator Superfamily
AbD4_03326	COG1289	transmembrane transporter activity
AbD4_03328	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AbD4_03336	COG1376	ErfK ybiS ycfS ynhG family protein
AbD4_03337	COG2832	Protein of unknown function (DUF454)
AbD4_03339	COG5510	response to toxic substance
AbD4_03343	COG0840	transmembrane signaling receptor activity
AbD4_03351	COG3422	double-strand break repair
AbD4_03352	COG2824	Alkylphosphonate utilization operon protein PhnA
AbD4_03353	COG3189	MarR family transcriptional regulator
AbD4_03355	COG0354	folic acid binding
AbD4_03356	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AbD4_03358	COG0679	Auxin Efflux Carrier
AbD4_03359	COG1902	pentaerythritol trinitrate reductase activity
AbD4_03360	COG4772	TonB-dependent receptor
AbD4_03361	COG2094	Belongs to the DNA glycosylase MPG family
AbD4_03367	COG1217	gtp-binding protein TYPA
AbD4_03368	COG2233	PERMEase
AbD4_03370	COG0833	amino acid
AbD4_03371	COG1690	Belongs to the RtcB family
AbD4_03373	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AbD4_03373	COG2885	chlorophyll binding
AbD4_03375	COG0183	Belongs to the thiolase family
AbD4_03379	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AbD4_03383	COG2207	Transcriptional regulator
AbD4_03384	COG0183	Belongs to the thiolase family
AbD4_03388	COG2153	protein acetylation
AbD4_03390	COG1272	protein, Hemolysin III
AbD4_03391	COG0477	Major facilitator Superfamily
AbD4_03394	COG0450	alkyl hydroperoxide reductase
AbD4_03398	COG0285	dihydrofolate synthase activity
AbD4_03408	COG2096	Adenosyltransferase
AbD4_03412	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AbD4_03413	COG0745	RESPONSE REGULATOR receiver
AbD4_03414	COG2205	protein histidine kinase activity
AbD4_03416	COG1960	acyl-CoA dehydrogenase activity
AbD4_03417	COG1960	acyl-CoA dehydrogenase activity
AbD4_03428	COG1442	glycosyl transferase family 8
AbD4_03431	COG0438	transferase activity, transferring glycosyl groups
AbD4_03433	COG0438	transferase activity, transferring glycosyl groups
AbD4_03434	COG0726	polysaccharide deacetylase
AbD4_03437	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AbD4_03438	COG2205	protein histidine kinase activity
AbD4_03444	COG1862	Preprotein translocase
AbD4_03446	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AbD4_03447	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AbD4_03449	COG3781	membrane
AbD4_03450	COG0613	PHP domain protein
AbD4_03452	COG2350	Protein conserved in bacteria
AbD4_03458	COG1607	acyl-coa hydrolase
AbD4_03470	COG2199	diguanylate cyclase activity
AbD4_03472	COG1408	metallophosphoesterase
AbD4_03473	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AbD4_03475	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AbD4_03479	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AbD4_03480	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AbD4_03481	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AbD4_03483	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AbD4_03485	COG2969	positive regulation of protein catabolic process
AbD4_03489	COG1960	acyl-CoA dehydrogenase activity
AbD4_03490	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AbD4_03493	COG1309	transcriptional regulator
AbD4_03494	COG1960	acyl-CoA dehydrogenase activity
AbD4_03503	COG1183	phosphatidylcholine synthase activity
AbD4_03504	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AbD4_03510	COG0739	heme binding
AbD4_03510	COG0741	lytic transglycosylase activity
AbD4_03510	COG1196	nuclear chromosome segregation
AbD4_03512	COG1702	phosphate starvation-inducible protein PhoH
AbD4_03519	COG1295	ribonuclease BN
AbD4_03520	COG0697	spore germination
AbD4_03521	COG2169	Transcriptional regulator
AbD4_03522	COG0179	Fumarylacetoacetate (FAA) hydrolase
AbD4_03532	COG0557	exoribonuclease II activity
AbD4_03533	COG0339	signal peptide processing
AbD4_03534	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AbD4_03541	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AbD4_03542	COG1960	acyl-CoA dehydrogenase activity
AbD4_03573	COG0626	cystathionine gamma-synthase activity
AbD4_03574	COG0433	COG0433 Predicted ATPase
AbD4_03575	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AbD4_03575	COG1017	nitric oxide dioxygenase activity
AbD4_03576	COG1959	2 iron, 2 sulfur cluster binding
AbD4_03579	COG1301	dicarboxylic acid transport
AbD4_03580	COG1946	Acyl-CoA thioesterase
AbD4_03584	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AbD4_03585	COG1040	competence protein
AbD4_03586	COG0494	nUDIX hydrolase
AbD4_03588	COG0598	Magnesium transport protein CorA
AbD4_03590	COG2854	intermembrane phospholipid transfer
AbD4_03592	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AbD4_03593	COG1127	ABC transporter
AbD4_03595	COG0513	Belongs to the DEAD box helicase family
AbD4_03600	COG0408	coproporphyrinogen oxidase activity
AbD4_03603	COG1960	acyl-CoA dehydrogenase activity
AbD4_03605	COG1983	PspC domain protein
AbD4_03606	COG0517	IMP dehydrogenase activity
AbD4_03613	COG1106	Psort location Cytoplasmic, score
AbD4_03617	COG0583	DNA-binding transcription factor activity
AbD4_03625	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_03627	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AbD4_03628	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AbD4_03630	COG0833	amino acid
AbD4_03637	COG0628	permease
AbD4_03639	COG1289	transmembrane transporter activity
AbD4_03642	COG2249	NAD(P)H dehydrogenase (quinone) activity
AbD4_03643	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AbD4_03645	COG0277	FAD linked oxidase domain protein
AbD4_03646	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AbD4_03651	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AbD4_03652	COG5380	lipid catabolic process
AbD4_03656	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AbD4_03666	COG0194	GDP metabolic process
AbD4_03668	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AbD4_03672	COG3307	-O-antigen
AbD4_03675	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AbD4_03676	COG1704	LemA family
AbD4_03678	COG0493	'glutamate synthase
AbD4_03679	COG0067	glutamate synthase
AbD4_03679	COG0069	glutamate synthase activity
AbD4_03679	COG0070	glutamate synthase
AbD4_03689	COG2226	methyltransferase
AbD4_03692	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AbD4_03693	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AbD4_03702	COG0833	amino acid
AbD4_03715	COG0488	(ABC) transporter
AbD4_03716	COG2873	o-acetylhomoserine
AbD4_03717	COG4221	oxidoreductase activity
AbD4_03718	COG0659	secondary active sulfate transmembrane transporter activity
AbD4_03722	COG0427	acetyl-CoA hydrolase
AbD4_03728	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AbD4_03735	COG2329	Antibiotic biosynthesis monooxygenase
AbD4_03738	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AbD4_03753	COG2249	NAD(P)H dehydrogenase (quinone) activity
AbD4_03754	COG1733	regulation of RNA biosynthetic process
AbD4_03760	COG1733	regulation of RNA biosynthetic process
AbD4_03764	COG0667	Aldo Keto reductase
AbD4_03768	COG0583	DNA-binding transcription factor activity
AbD4_03769	COG2814	Major facilitator Superfamily
AbD4_03776	COG1335	isochorismatase
AbD4_03778	COG1012	belongs to the aldehyde dehydrogenase family
AbD4_03779	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AbD4_03781	COG1113	amino acid transport
AbD4_03783	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AbD4_03786	COG2814	Major facilitator Superfamily
AbD4_03788	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AbD4_03788	COG0352	thiamine-phosphate diphosphorylase activity
AbD4_03788	COG0351	phosphomethylpyrimidine kinase
AbD4_03792	COG1309	transcriptional regulator
AbD4_03796	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AbD4_03798	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AbD4_03799	COG3162	membrane
AbD4_03800	COG0784	Response regulator, receiver
AbD4_03800	COG2205	protein histidine kinase activity
AbD4_03800	COG2198	Histidine kinase
AbD4_03805	COG1522	sequence-specific DNA binding
AbD4_03806	COG1335	isochorismatase
AbD4_03807	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AbD4_03809	COG0668	transmembrane transport
AbD4_03810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AbD4_03811	COG1519	Transferase
AbD4_03812	COG1902	pentaerythritol trinitrate reductase activity
AbD4_03818	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AbD4_03823	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AbD4_03823	COG0426	domain, Protein
AbD4_03824	COG4774	siderophore transport
AbD4_03825	COG2119	membrane
AbD4_03827	COG0508	dehydrogenase complex catalyzes the overall conversion of
AbD4_03829	COG4942	peptidase
AbD4_03832	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AbD4_03834	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AbD4_03838	COG0189	ligase activity
AbD4_03843	COG0708	Exodeoxyribonuclease III
AbD4_03844	COG1393	Belongs to the ArsC family
AbD4_03847	COG3706	GGDEF domain
AbD4_03854	COG2351	hydroxyisourate hydrolase activity
AbD4_03855	COG2233	PERMEase
AbD4_03857	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AbD4_03859	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
AbD4_03860	COG1028	Short-chain dehydrogenase reductase Sdr
AbD4_03862	COG3150	esterase
AbD4_03872	COG5632	N-Acetylmuramoyl-L-alanine amidase
AbD4_03872	COG3409	Peptidoglycan-binding domain 1 protein
AbD4_03872	COG1388	LysM domain
AbD4_03875	COG2918	glutathione biosynthetic process
AbD4_03878	COG2733	membrane
AbD4_03879	COG0436	Aminotransferase
AbD4_03880	COG0534	Mate efflux family protein
AbD4_03897	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AbD4_03898	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AbD4_03900	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AbD4_03906	COG2433	Pfam Transposase IS66
AbD4_03909	COG4372	Transposase
AbD4_03911	COG2963	transposase activity
AbD4_03915	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_03919	COG0534	Mate efflux family protein
AbD4_03927	COG1271	oxidase subunit
AbD4_03928	COG1294	oxidase, subunit
AbD4_03934	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AbD4_03940	COG0523	cobalamin synthesis protein
AbD4_03943	COG0215	cysteine-tRNA ligase activity
AbD4_03945	COG1469	GTP cyclohydrolase I activity
AbD4_03946	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AbD4_03947	COG4451	ribulose bisphosphate carboxylase, small
AbD4_03947	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AbD4_03948	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AbD4_03949	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AbD4_03954	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AbD4_03955	COG0546	phosphoglycolate phosphatase activity
AbD4_03957	COG0010	Belongs to the arginase family
AbD4_03963	COG2188	Transcriptional regulator
AbD4_03965	COG0523	cobalamin synthesis protein
AbD4_03967	COG1113	amino acid transport
AbD4_03969	COG0625	glutathione transferase activity
AbD4_03973	COG1683	Conserved Protein
AbD4_03974	COG0534	Mate efflux family protein
AbD4_03976	COG0385	Bile acid
AbD4_03977	COG1335	isochorismatase
AbD4_03978	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AbD4_03982	COG2116	formate transmembrane transporter activity
AbD4_03983	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AbD4_03984	COG2133	pyrroloquinoline quinone binding
AbD4_03985	COG2983	Belongs to the UPF0260 family
AbD4_03989	COG1194	a g-specific adenine glycosylase
AbD4_03993	COG2818	Glycosylase
AbD4_03994	COG1064	alcohol dehydrogenase
AbD4_03995	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AbD4_03997	COG0583	DNA-binding transcription factor activity
AbD4_03998	COG0656	L-ascorbic acid biosynthetic process
AbD4_03999	COG2814	Major facilitator Superfamily
AbD4_04006	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AbD4_04009	COG2233	PERMEase
AbD4_04010	COG0583	DNA-binding transcription factor activity
AbD4_04017	COG0733	neurotransmitter:sodium symporter activity
AbD4_p200001	COG1192	Involved in chromosome partitioning
AbD4_p200003	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AbD4_p200011	COG0739	heme binding
AbD4_p200022	COG2963	transposase activity
AbD4_p200024	COG4372	Transposase
AbD4_p200048	COG2963	transposase activity
AbD4_p200050	COG4372	Transposase
AbD4_p200062	COG4372	Transposase
AbD4_p200064	COG2963	transposase activity
AbD4_p200068	COG0501	Belongs to the peptidase M48B family
AbD4_p200075	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AbD4_p200084	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AbD4_p200090	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AbD4_p200093	COG2963	transposase activity
AbD4_p200095	COG4372	Transposase
AbD4_p200133	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB