locus-tag class description KU039_00005 PF00308 Bacterial dnaA protein KU039_00005 PF08299 Bacterial dnaA protein helix-turn-helix KU039_00005 PF11638 DnaA N-terminal domain KU039_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KU039_00010 PF02767 DNA polymerase III beta subunit, central domain KU039_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KU039_00015 PF02463 RecF/RecN/SMC N terminal domain KU039_00020 PF00204 DNA gyrase B KU039_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KU039_00020 PF18053 DNA gyrase B subunit insert domain KU039_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_00020 PF01751 Toprim domain KU039_00030 PF09335 SNARE associated Golgi protein KU039_00035 PF00005 ABC transporter KU039_00035 PF12848 ABC transporter KU039_00055 PF01521 Iron-sulphur cluster biosynthesis KU039_00060 PF00561 alpha/beta hydrolase fold KU039_00065 PF03702 Anhydro-N-acetylmuramic acid kinase KU039_00070 PF00579 tRNA synthetases class I (W and Y) KU039_00110 PF00209 Sodium:neurotransmitter symporter family KU039_00120 PF01189 16S rRNA methyltransferase RsmB/F KU039_00120 PF01029 NusB family KU039_00125 PF02911 Formyl transferase, C-terminal domain KU039_00125 PF00551 Formyl transferase KU039_00130 PF00920 Dehydratase family KU039_00145 PF03466 LysR substrate binding domain KU039_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_00150 PF00860 Permease family KU039_00155 PF00311 Phosphoenolpyruvate carboxylase KU039_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region KU039_00160 PF00440 Bacterial regulatory proteins, tetR family KU039_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_00170 PF00873 AcrB/AcrD/AcrF family KU039_00180 PF00684 DnaJ central domain KU039_00180 PF01556 DnaJ C terminal domain KU039_00180 PF00226 DnaJ domain KU039_00190 PF05173 Dihydrodipicolinate reductase, C-terminus KU039_00190 PF01113 Dihydrodipicolinate reductase, N-terminus KU039_00200 PF07690 Major Facilitator Superfamily KU039_00205 PF00248 Aldo/keto reductase family KU039_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_00210 PF03466 LysR substrate binding domain KU039_00225 PF00155 Aminotransferase class I and II KU039_00225 PF00392 Bacterial regulatory proteins, gntR family KU039_00230 PF08240 Alcohol dehydrogenase GroES-like domain KU039_00230 PF00107 Zinc-binding dehydrogenase KU039_00235 PF03352 Methyladenine glycosylase KU039_00250 PF14815 NUDIX domain KU039_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein KU039_00250 PF00633 Helix-hairpin-helix motif KU039_00250 PF10576 Iron-sulfur binding domain of endonuclease III KU039_00265 PF07043 Protein of unknown function (DUF1328) KU039_00270 PF03692 Putative zinc- or iron-chelating domain KU039_00275 PF07995 Glucose / Sorbosone dehydrogenase KU039_00280 PF12002 MgsA AAA+ ATPase C terminal KU039_00280 PF00004 ATPase family associated with various cellular activities (AAA) KU039_00280 PF16193 AAA C-terminal domain KU039_00285 PF01226 Formate/nitrite transporter KU039_00295 PF01259 SAICAR synthetase KU039_00305 PF00701 Dihydrodipicolinate synthetase family KU039_00310 PF00857 Isochorismatase family KU039_00315 PF01758 Sodium Bile acid symporter family KU039_00320 PF01554 MatE KU039_00325 PF04463 Protein of unknown function (DUF523) KU039_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU039_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU039_00345 PF02798 Glutathione S-transferase, N-terminal domain KU039_00345 PF14497 Glutathione S-transferase, C-terminal domain KU039_00355 PF00324 Amino acid permease KU039_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU039_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU039_00375 PF07702 UTRA domain KU039_00375 PF00392 Bacterial regulatory proteins, gntR family KU039_00380 PF05962 HutD KU039_00385 PF01175 Urocanase Rossmann-like domain KU039_00385 PF17392 Urocanase C-terminal domain KU039_00385 PF17391 Urocanase N-terminal domain KU039_00390 PF00221 Aromatic amino acid lyase KU039_00395 PF00324 Amino acid permease KU039_00400 PF01979 Amidohydrolase family KU039_00405 PF00491 Arginase family KU039_00420 PF01177 Asp/Glu/Hydantoin racemase KU039_00425 PF01380 SIS domain KU039_00430 PF14602 Hexapeptide repeat of succinyl-transferase KU039_00430 PF12804 MobA-like NTP transferase domain KU039_00430 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_00435 PF04608 Phosphatidylglycerophosphatase A KU039_00440 PF02769 AIR synthase related protein, C-terminal domain KU039_00440 PF00586 AIR synthase related protein, N-terminal domain KU039_00445 PF01029 NusB family KU039_00450 PF00885 6,7-dimethyl-8-ribityllumazine synthase KU039_00455 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU039_00455 PF00925 GTP cyclohydrolase II KU039_00480 PF02580 D-Tyr-tRNA(Tyr) deacylase KU039_00485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KU039_00485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU039_00490 PF00581 Rhodanese-like domain KU039_00495 PF02666 Phosphatidylserine decarboxylase KU039_00500 PF03069 Acetamidase/Formamidase family KU039_00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_00520 PF00989 PAS fold KU039_00520 PF11808 Phosphate regulon sensor protein PhoR KU039_00520 PF00512 His Kinase A (phospho-acceptor) domain KU039_00525 PF00072 Response regulator receiver domain KU039_00525 PF00486 Transcriptional regulatory protein, C terminal KU039_00535 PF00106 short chain dehydrogenase KU039_00540 PF01554 MatE KU039_00545 PF00155 Aminotransferase class I and II KU039_00550 PF04286 Protein of unknown function (DUF445) KU039_00565 PF04262 Glutamate-cysteine ligase KU039_00570 PF02600 Disulfide bond formation protein DsbB KU039_00575 PF13296 Putative type VI secretion system Rhs element Vgr KU039_00575 PF04717 Type VI secretion system, phage-baseplate injector KU039_00575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU039_00580 PF00877 NlpC/P60 family KU039_00580 PF01476 LysM domain KU039_00595 PF05728 Uncharacterised protein family (UPF0227) KU039_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_00600 PF00986 DNA gyrase B subunit, carboxyl terminus KU039_00600 PF00204 DNA gyrase B KU039_00600 PF01751 Toprim domain KU039_00605 PF00106 short chain dehydrogenase KU039_00610 PF04115 Ureidoglycolate lyase KU039_00615 PF03561 Allantoicase repeat KU039_00620 PF01494 FAD binding domain KU039_00630 PF00860 Permease family KU039_00635 PF00576 HIUase/Transthyretin family KU039_00665 PF02683 Cytochrome C biogenesis protein transmembrane region KU039_00665 PF11412 Disulphide bond corrector protein DsbC KU039_00670 PF00990 Diguanylate cyclase, GGDEF domain KU039_00670 PF07694 5TMR of 5TMR-LYT KU039_00675 PF07859 alpha/beta hydrolase fold KU039_00685 PF03960 ArsC family KU039_00690 PF03372 Endonuclease/Exonuclease/phosphatase family KU039_00695 PF00156 Phosphoribosyl transferase domain KU039_00700 PF07715 TonB-dependent Receptor Plug Domain KU039_00700 PF00593 TonB dependent receptor KU039_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KU039_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KU039_00715 PF03033 Glycosyltransferase family 28 N-terminal domain KU039_00715 PF04101 Glycosyltransferase family 28 C-terminal domain KU039_00720 PF08245 Mur ligase middle domain KU039_00720 PF02875 Mur ligase family, glutamate ligase domain KU039_00720 PF01225 Mur ligase family, catalytic domain KU039_00725 PF01820 D-ala D-ala ligase N-terminus KU039_00725 PF07478 D-ala D-ala ligase C-terminus KU039_00730 PF08478 POTRA domain, FtsQ-type KU039_00730 PF03799 Cell division protein FtsQ KU039_00735 PF02491 SHS2 domain inserted in FTSA KU039_00740 PF00091 Tubulin/FtsZ family, GTPase domain KU039_00740 PF12327 FtsZ family, C-terminal domain KU039_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KU039_00755 PF01551 Peptidase family M23 KU039_00760 PF00456 Transketolase, thiamine diphosphate binding domain KU039_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain KU039_00765 PF02817 e3 binding domain KU039_00765 PF00364 Biotin-requiring enzyme KU039_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU039_00775 PF01169 Uncharacterized protein family UPF0016 KU039_00780 PF07715 TonB-dependent Receptor Plug Domain KU039_00780 PF00593 TonB dependent receptor KU039_00785 PF00258 Flavodoxin KU039_00785 PF01613 Flavin reductase like domain KU039_00790 PF03692 Putative zinc- or iron-chelating domain KU039_00795 PF00478 IMP dehydrogenase / GMP reductase domain KU039_00795 PF00571 CBS domain KU039_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU039_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU039_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU039_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU039_00805 PF01243 Pyridoxamine 5'-phosphate oxidase KU039_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KU039_00810 PF02272 DHHA1 domain KU039_00810 PF01368 DHH family KU039_00810 PF17768 RecJ OB domain KU039_00830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU039_00835 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KU039_00840 PF04452 RNA methyltransferase KU039_00845 PF00924 Mechanosensitive ion channel KU039_00855 PF00501 AMP-binding enzyme KU039_00855 PF13193 AMP-binding enzyme C-terminal domain KU039_00855 PF16177 Acetyl-coenzyme A synthetase N-terminus KU039_00860 PF00857 Isochorismatase family KU039_00865 PF01037 Lrp/AsnC ligand binding domain KU039_00870 PF00872 Transposase, Mutator family KU039_00875 PF00296 Luciferase-like monooxygenase KU039_00880 PF03358 NADPH-dependent FMN reductase KU039_00885 PF00072 Response regulator receiver domain KU039_00885 PF00196 Bacterial regulatory proteins, luxR family KU039_00895 PF00672 HAMP domain KU039_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_00895 PF01627 Hpt domain KU039_00895 PF00072 Response regulator receiver domain KU039_00895 PF00512 His Kinase A (phospho-acceptor) domain KU039_00900 PF04341 Protein of unknown function, DUF485 KU039_00905 PF00474 Sodium:solute symporter family KU039_00915 PF02028 BCCT, betaine/carnitine/choline family transporter KU039_00925 PF00990 Diguanylate cyclase, GGDEF domain KU039_00935 PF00005 ABC transporter KU039_00935 PF17755 UvrA DNA-binding domain KU039_00935 PF17760 UvrA interaction domain KU039_00940 PF16925 Tetracyclin repressor-like, C-terminal domain KU039_00940 PF00440 Bacterial regulatory proteins, tetR family KU039_00945 PF00107 Zinc-binding dehydrogenase KU039_00945 PF08240 Alcohol dehydrogenase GroES-like domain KU039_00960 PF06942 GlpM protein KU039_00965 PF02581 Thiamine monophosphate synthase KU039_00965 PF03070 TENA/THI-4/PQQC family KU039_00965 PF08543 Phosphomethylpyrimidine kinase KU039_00975 PF07690 Major Facilitator Superfamily KU039_00980 PF00436 Single-strand binding protein family KU039_00990 PF03591 AzlC protein KU039_01000 PF00324 Amino acid permease KU039_01005 PF00392 Bacterial regulatory proteins, gntR family KU039_01005 PF00155 Aminotransferase class I and II KU039_01010 PF00202 Aminotransferase class-III KU039_01015 PF00171 Aldehyde dehydrogenase family KU039_01020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_01025 PF00857 Isochorismatase family KU039_01030 PF02678 Pirin KU039_01030 PF05726 Pirin C-terminal cupin domain KU039_01035 PF01593 Flavin containing amine oxidoreductase KU039_01055 PF07690 Major Facilitator Superfamily KU039_01060 PF03466 LysR substrate binding domain KU039_01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_01080 PF00248 Aldo/keto reductase family KU039_01085 PF12833 Helix-turn-helix domain KU039_01085 PF02311 AraC-like ligand binding domain KU039_01115 PF01638 HxlR-like helix-turn-helix KU039_01120 PF02525 Flavodoxin-like fold KU039_01140 PF02705 K+ potassium transporter KU039_01165 PF00230 Major intrinsic protein KU039_01185 PF00977 Histidine biosynthesis protein KU039_01190 PF01636 Phosphotransferase enzyme family KU039_01205 PF03992 Antibiotic biosynthesis monooxygenase KU039_01220 PF00977 Histidine biosynthesis protein KU039_01235 PF00117 Glutamine amidotransferase class-I KU039_01240 PF00475 Imidazoleglycerol-phosphate dehydratase KU039_01260 PF00583 Acetyltransferase (GNAT) family KU039_01265 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KU039_01265 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KU039_01275 PF00672 HAMP domain KU039_01275 PF00512 His Kinase A (phospho-acceptor) domain KU039_01275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_01280 PF00486 Transcriptional regulatory protein, C terminal KU039_01280 PF00072 Response regulator receiver domain KU039_01285 PF09371 Tex-like protein N-terminal domain KU039_01285 PF16921 Tex protein YqgF-like domain KU039_01285 PF17674 HHH domain KU039_01285 PF00575 S1 RNA binding domain KU039_01290 PF01740 STAS domain KU039_01290 PF00916 Sulfate permease family KU039_01295 PF00106 short chain dehydrogenase KU039_01300 PF01053 Cys/Met metabolism PLP-dependent enzyme KU039_01305 PF12848 ABC transporter KU039_01305 PF00005 ABC transporter KU039_01330 PF04191 Phospholipid methyltransferase KU039_01350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_01350 PF00529 HlyD membrane-fusion protein of T1SS KU039_01355 PF00873 AcrB/AcrD/AcrF family KU039_01360 PF01545 Cation efflux family KU039_01390 PF00324 Amino acid permease KU039_01405 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU039_01420 PF01795 MraW methylase family KU039_01430 PF00905 Penicillin binding protein transpeptidase domain KU039_01430 PF03717 Penicillin-binding Protein dimerisation domain KU039_01435 PF01225 Mur ligase family, catalytic domain KU039_01435 PF08245 Mur ligase middle domain KU039_01435 PF02875 Mur ligase family, glutamate ligase domain KU039_01440 PF01225 Mur ligase family, catalytic domain KU039_01440 PF02875 Mur ligase family, glutamate ligase domain KU039_01440 PF08245 Mur ligase middle domain KU039_01445 PF00953 Glycosyl transferase family 4 KU039_01455 PF13847 Methyltransferase domain KU039_01460 PF00905 Penicillin binding protein transpeptidase domain KU039_01460 PF00912 Transglycosylase KU039_01460 PF17092 Penicillin-binding protein OB-like domain KU039_01465 PF11104 Type IV pilus assembly protein PilM; KU039_01470 PF05137 Fimbrial assembly protein (PilN) KU039_01475 PF04350 Pilus assembly protein, PilO KU039_01485 PF11741 AMIN domain KU039_01485 PF00263 Bacterial type II and III secretion system protein KU039_01485 PF03958 Bacterial type II/III secretion system short domain KU039_01485 PF07660 Secretin and TonB N terminus short domain KU039_01490 PF01202 Shikimate kinase KU039_01495 PF01761 3-dehydroquinate synthase KU039_01505 PF01493 GXGXG motif KU039_01505 PF00310 Glutamine amidotransferases class-II KU039_01505 PF04898 Glutamate synthase central domain KU039_01505 PF01645 Conserved region in glutamate synthase KU039_01510 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_01510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KU039_01520 PF04011 LemA family KU039_01525 PF04536 TPM domain KU039_01535 PF00114 Pilin (bacterial filament) KU039_01535 PF07963 Prokaryotic N-terminal methylation motif KU039_01545 PF11846 Virulence factor membrane-bound polymerase, C-terminal KU039_01545 PF04932 O-Antigen ligase KU039_01545 PF15864 Protein glycosylation ligase KU039_01555 PF00210 Ferritin-like domain KU039_01560 PF04324 BFD-like [2Fe-2S] binding domain KU039_01565 PF01042 Endoribonuclease L-PSP KU039_01570 PF04607 Region found in RelA / SpoT proteins KU039_01570 PF02824 TGS domain KU039_01570 PF13291 ACT domain KU039_01580 PF01192 RNA polymerase Rpb6 KU039_01585 PF00625 Guanylate kinase KU039_01590 PF02401 LytB protein KU039_01630 PF00886 Ribosomal protein S16 KU039_01635 PF05239 PRC-barrel domain KU039_01635 PF01782 RimM N-terminal domain KU039_01640 PF01746 tRNA (Guanine-1)-methyltransferase KU039_01645 PF01245 Ribosomal protein L19 KU039_01650 PF00561 alpha/beta hydrolase fold KU039_01655 PF03280 Proteobacterial lipase chaperone protein KU039_01660 PF09157 Pseudouridine synthase II TruB, C-terminal KU039_01660 PF16198 tRNA pseudouridylate synthase B C-terminal domain KU039_01660 PF01509 TruB family pseudouridylate synthase (N terminal domain) KU039_01665 PF01925 Sulfite exporter TauE/SafE KU039_01675 PF00892 EamA-like transporter family KU039_01680 PF00892 EamA-like transporter family KU039_01685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU039_01685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU039_01690 PF02913 FAD linked oxidases, C-terminal domain KU039_01690 PF01565 FAD binding domain KU039_01700 PF03992 Antibiotic biosynthesis monooxygenase KU039_01705 PF02525 Flavodoxin-like fold KU039_01715 PF07690 Major Facilitator Superfamily KU039_01720 PF12805 FUSC-like inner membrane protein yccS KU039_01725 PF00080 Copper/zinc superoxide dismutase (SODC) KU039_01730 PF01594 AI-2E family transporter KU039_01735 PF13614 AAA domain KU039_01765 PF00324 Amino acid permease KU039_01770 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU039_01770 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU039_01775 PF00202 Aminotransferase class-III KU039_01780 PF04958 Arginine N-succinyltransferase beta subunit KU039_01785 PF00171 Aldehyde dehydrogenase family KU039_01790 PF04996 Succinylarginine dihydrolase KU039_01795 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KU039_01810 PF00082 Subtilase family KU039_01810 PF05922 Peptidase inhibitor I9 KU039_01825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_01825 PF03466 LysR substrate binding domain KU039_01830 PF00892 EamA-like transporter family KU039_01840 PF05746 DALR anticodon binding domain KU039_01840 PF02092 Glycyl-tRNA synthetase beta subunit KU039_01845 PF02091 Glycyl-tRNA synthetase alpha subunit KU039_01875 PF00571 CBS domain KU039_01880 PF04024 PspC domain KU039_01890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_01890 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_01890 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU039_01890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_01900 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KU039_01900 PF08501 Shikimate dehydrogenase substrate binding domain KU039_01900 PF01488 Shikimate / quinate 5-dehydrogenase KU039_01905 PF01218 Coproporphyrinogen III oxidase KU039_01910 PF00925 GTP cyclohydrolase II KU039_01915 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KU039_01915 PF02779 Transketolase, pyrimidine binding domain KU039_01915 PF02780 Transketolase, C-terminal domain KU039_01920 PF00459 Inositol monophosphatase family KU039_01925 PF03880 DbpA RNA binding domain KU039_01925 PF00270 DEAD/DEAH box helicase KU039_01925 PF12343 Cold shock protein DEAD box A KU039_01925 PF00271 Helicase conserved C-terminal domain KU039_01935 PF00005 ABC transporter KU039_01940 PF02405 Permease MlaE KU039_01950 PF05494 MlaC protein KU039_01960 PF01544 CorA-like Mg2+ transporter protein KU039_01965 PF03641 Possible lysine decarboxylase KU039_01970 PF00293 NUDIX domain KU039_01975 PF00156 Phosphoribosyl transferase domain KU039_01980 PF00271 Helicase conserved C-terminal domain KU039_01980 PF00270 DEAD/DEAH box helicase KU039_01980 PF17191 RecG wedge domain KU039_01995 PF01553 Acyltransferase KU039_02005 PF00375 Sodium:dicarboxylate symporter family KU039_02015 PF01926 50S ribosome-binding GTPase KU039_02020 PF02082 Transcriptional regulator KU039_02025 PF00175 Oxidoreductase NAD-binding domain KU039_02025 PF00970 Oxidoreductase FAD-binding domain KU039_02025 PF00042 Globin KU039_02030 PF05872 Bacterial protein of unknown function (DUF853) KU039_02035 PF01053 Cys/Met metabolism PLP-dependent enzyme KU039_02040 PF00117 Glutamine amidotransferase class-I KU039_02045 PF00338 Ribosomal protein S10p/S20e KU039_02050 PF00297 Ribosomal protein L3 KU039_02055 PF00573 Ribosomal protein L4/L1 family KU039_02060 PF00276 Ribosomal protein L23 KU039_02065 PF00181 Ribosomal Proteins L2, RNA binding domain KU039_02065 PF03947 Ribosomal Proteins L2, C-terminal domain KU039_02070 PF00203 Ribosomal protein S19 KU039_02075 PF00237 Ribosomal protein L22p/L17e KU039_02080 PF00189 Ribosomal protein S3, C-terminal domain KU039_02080 PF07650 KH domain KU039_02085 PF00252 Ribosomal protein L16p/L10e KU039_02090 PF00831 Ribosomal L29 protein KU039_02095 PF00366 Ribosomal protein S17 KU039_02100 PF00238 Ribosomal protein L14p/L23e KU039_02105 PF00467 KOW motif KU039_02105 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KU039_02110 PF00281 Ribosomal protein L5 KU039_02110 PF00673 ribosomal L5P family C-terminus KU039_02115 PF00253 Ribosomal protein S14p/S29e KU039_02120 PF00410 Ribosomal protein S8 KU039_02125 PF00347 Ribosomal protein L6 KU039_02130 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KU039_02135 PF03719 Ribosomal protein S5, C-terminal domain KU039_02135 PF00333 Ribosomal protein S5, N-terminal domain KU039_02140 PF00327 Ribosomal protein L30p/L7e KU039_02145 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KU039_02150 PF00344 SecY translocase KU039_02155 PF00444 Ribosomal protein L36 KU039_02160 PF00416 Ribosomal protein S13/S18 KU039_02165 PF00411 Ribosomal protein S11 KU039_02170 PF00163 Ribosomal protein S4/S9 N-terminal domain KU039_02170 PF01479 S4 domain KU039_02175 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KU039_02175 PF01000 RNA polymerase Rpb3/RpoA insert domain KU039_02175 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KU039_02180 PF01196 Ribosomal protein L17 KU039_02185 PF00743 Flavin-binding monooxygenase-like KU039_02190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_02190 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_02190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_02195 PF03937 Flavinator of succinate dehydrogenase KU039_02225 PF09526 Probable metal-binding protein (DUF2387) KU039_02230 PF01432 Peptidase family M3 KU039_02235 PF17876 Cold shock domain KU039_02235 PF08461 Ribonuclease R winged-helix domain KU039_02235 PF08206 Ribonuclease B OB domain KU039_02235 PF00773 RNB domain KU039_02235 PF00575 S1 RNA binding domain KU039_02280 PF01557 Fumarylacetoacetate (FAA) hydrolase family KU039_02285 PF12833 Helix-turn-helix domain KU039_02290 PF00892 EamA-like transporter family KU039_02295 PF03631 Virulence factor BrkB KU039_02300 PF03358 NADPH-dependent FMN reductase KU039_02325 PF02130 Uncharacterized protein family UPF0054 KU039_02330 PF02562 PhoH-like protein KU039_02335 PF01938 TRAM domain KU039_02335 PF04055 Radical SAM superfamily KU039_02335 PF00919 Uncharacterized protein family UPF0004 KU039_02340 PF01551 Peptidase family M23 KU039_02340 PF10145 Phage-related minor tail protein KU039_02340 PF01464 Transglycosylase SLT domain KU039_02350 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KU039_02350 PF00056 lactate/malate dehydrogenase, NAD binding domain KU039_02370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KU039_02375 PF01066 CDP-alcohol phosphatidyltransferase KU039_02420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_02420 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_02420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_02425 PF17932 Tetracyclin repressor-like, C-terminal domain KU039_02425 PF00440 Bacterial regulatory proteins, tetR family KU039_02440 PF01039 Carboxyl transferase domain KU039_02445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_02445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_02445 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_02455 PF00364 Biotin-requiring enzyme KU039_02455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU039_02455 PF00289 Biotin carboxylase, N-terminal domain KU039_02455 PF02785 Biotin carboxylase C-terminal domain KU039_02465 PF04386 Stringent starvation protein B KU039_02470 PF13417 Glutathione S-transferase, N-terminal domain KU039_02470 PF00043 Glutathione S-transferase, C-terminal domain KU039_02475 PF00380 Ribosomal protein S9/S16 KU039_02480 PF00572 Ribosomal protein L13 KU039_02485 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KU039_02490 PF00398 Ribosomal RNA adenine dimethylase KU039_02495 PF00149 Calcineurin-like phosphoesterase KU039_02515 PF01926 50S ribosome-binding GTPase KU039_02515 PF16360 GTP-binding GTPase Middle Region KU039_02515 PF13167 GTP-binding GTPase N-terminal KU039_02525 PF13091 PLD-like domain KU039_02530 PF00149 Calcineurin-like phosphoesterase KU039_02530 PF10518 TAT (twin-arginine translocation) pathway signal sequence KU039_02535 PF01389 OmpA-like transmembrane domain KU039_02535 PF00691 OmpA family KU039_02540 PF00990 Diguanylate cyclase, GGDEF domain KU039_02540 PF17152 Periplasmic sensor domain KU039_02575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU039_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_02585 PF00753 Metallo-beta-lactamase superfamily KU039_02585 PF04273 Putative phosphatase (DUF442) KU039_02590 PF00561 alpha/beta hydrolase fold KU039_02595 PF00085 Thioredoxin KU039_02600 PF03061 Thioesterase superfamily KU039_02610 PF04461 Protein of unknown function (DUF520) KU039_02620 PF01266 FAD dependent oxidoreductase KU039_02620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU039_02630 PF03795 YCII-related domain KU039_02635 PF04279 Intracellular septation protein A KU039_02640 PF02811 PHP domain KU039_02645 PF01062 Bestrophin, RFP-TM, chloride channel KU039_02650 PF04002 RadC-like JAB domain KU039_02655 PF04127 DNA / pantothenate metabolism flavoprotein KU039_02655 PF02441 Flavoprotein KU039_02660 PF02355 Protein export membrane protein KU039_02660 PF07549 SecD/SecF GG Motif KU039_02665 PF02355 Protein export membrane protein KU039_02665 PF13721 SecD export protein N-terminal TM region KU039_02665 PF07549 SecD/SecF GG Motif KU039_02670 PF02699 Preprotein translocase subunit KU039_02675 PF01702 Queuine tRNA-ribosyltransferase KU039_02690 PF02547 Queuosine biosynthesis protein KU039_02700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_02700 PF00512 His Kinase A (phospho-acceptor) domain KU039_02700 PF07689 KaiB domain KU039_02705 PF08335 GlnD PII-uridylyltransferase KU039_02705 PF03710 Glutamate-ammonia ligase adenylyltransferase KU039_02710 PF01063 Amino-transferase class IV KU039_02725 PF01522 Polysaccharide deacetylase KU039_02730 PF00535 Glycosyl transferase family 2 KU039_02735 PF13439 Glycosyltransferase Family 4 KU039_02735 PF00534 Glycosyl transferases group 1 KU039_02760 PF17102 Stealth protein CR3, conserved region 3 KU039_02760 PF11380 Stealth protein CR2, conserved region 2 KU039_02760 PF17101 Stealth protein CR1, conserved region 1 KU039_02765 PF00152 tRNA synthetases class II (D, K and N) KU039_02765 PF01336 OB-fold nucleic acid binding domain KU039_02765 PF02938 GAD domain KU039_02775 PF00593 TonB dependent receptor KU039_02775 PF07715 TonB-dependent Receptor Plug Domain KU039_02795 PF06146 Phosphate-starvation-inducible E KU039_02800 PF00043 Glutathione S-transferase, C-terminal domain KU039_02800 PF02798 Glutathione S-transferase, N-terminal domain KU039_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_02805 PF03466 LysR substrate binding domain KU039_02810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_02810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_02810 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_02810 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU039_02815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_02815 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU039_02815 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_02815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_02825 PF00512 His Kinase A (phospho-acceptor) domain KU039_02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_02825 PF00672 HAMP domain KU039_02830 PF00072 Response regulator receiver domain KU039_02830 PF00486 Transcriptional regulatory protein, C terminal KU039_02835 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KU039_02855 PF01923 Cobalamin adenosyltransferase KU039_02860 PF07715 TonB-dependent Receptor Plug Domain KU039_02860 PF00593 TonB dependent receptor KU039_02865 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KU039_02870 PF00291 Pyridoxal-phosphate dependent enzyme KU039_02895 PF00290 Tryptophan synthase alpha chain KU039_02900 PF01039 Carboxyl transferase domain KU039_02905 PF08245 Mur ligase middle domain KU039_02905 PF02875 Mur ligase family, glutamate ligase domain KU039_02920 PF00753 Metallo-beta-lactamase superfamily KU039_02925 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU039_02925 PF00578 AhpC/TSA family KU039_02930 PF02810 SEC-C motif KU039_02930 PF07517 SecA DEAD-like domain KU039_02930 PF01043 SecA preprotein cross-linking domain KU039_02930 PF07516 SecA Wing and Scaffold domain KU039_02940 PF07690 Major Facilitator Superfamily KU039_02940 PF00083 Sugar (and other) transporter KU039_02945 PF03006 Haemolysin-III related KU039_02970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU039_02970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU039_02970 PF00378 Enoyl-CoA hydratase/isomerase KU039_02975 PF00108 Thiolase, N-terminal domain KU039_02975 PF02803 Thiolase, C-terminal domain KU039_02980 PF12833 Helix-turn-helix domain KU039_02980 PF02311 AraC-like ligand binding domain KU039_02985 PF02515 CoA-transferase family III KU039_02990 PF04966 Carbohydrate-selective porin, OprB family KU039_02995 PF01011 PQQ enzyme repeat KU039_03000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU039_03000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU039_03010 PF00893 Small Multidrug Resistance protein KU039_03020 PF02803 Thiolase, C-terminal domain KU039_03020 PF00108 Thiolase, N-terminal domain KU039_03030 PF13505 Outer membrane protein beta-barrel domain KU039_03030 PF00691 OmpA family KU039_03040 PF01139 tRNA-splicing ligase RtcB KU039_03045 PF00324 Amino acid permease KU039_03050 PF05175 Methyltransferase small domain KU039_03050 PF08468 Methyltransferase small domain N-terminal KU039_03055 PF00860 Permease family KU039_03060 PF00009 Elongation factor Tu GTP binding domain KU039_03060 PF00679 Elongation factor G C-terminus KU039_03060 PF03144 Elongation factor Tu domain 2 KU039_03065 PF01741 Large-conductance mechanosensitive channel, MscL KU039_03080 PF06827 Zinc finger found in FPG and IleRS KU039_03080 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KU039_03080 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KU039_03085 PF02245 Methylpurine-DNA glycosylase (MPG) KU039_03090 PF07715 TonB-dependent Receptor Plug Domain KU039_03090 PF00593 TonB dependent receptor KU039_03105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU039_03120 PF13098 Thioredoxin-like domain KU039_03120 PF10411 Disulfide bond isomerase protein N-terminus KU039_03125 PF01571 Aminomethyltransferase folate-binding domain KU039_03135 PF04343 Protein of unknown function, DUF488 KU039_03140 PF08274 PhnA Zinc-Ribbon KU039_03140 PF03831 PhnA domain KU039_03145 PF07411 Domain of unknown function (DUF1508) KU039_03150 PF04073 Aminoacyl-tRNA editing domain KU039_03150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU039_03150 PF03129 Anticodon binding domain KU039_03155 PF00873 AcrB/AcrD/AcrF family KU039_03170 PF00072 Response regulator receiver domain KU039_03175 PF00072 Response regulator receiver domain KU039_03180 PF01584 CheW-like domain KU039_03185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KU039_03185 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KU039_03190 PF00072 Response regulator receiver domain KU039_03190 PF01584 CheW-like domain KU039_03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_03190 PF01627 Hpt domain KU039_03200 PF07687 Peptidase dimerisation domain KU039_03200 PF01546 Peptidase family M20/M25/M40 KU039_03205 PF08085 Entericidin EcnA/B family KU039_03215 PF04304 Protein of unknown function (DUF454) KU039_03220 PF17969 L,D-transpeptidase C-terminal domain KU039_03220 PF03734 L,D-transpeptidase catalytic domain KU039_03260 PF00258 Flavodoxin KU039_03260 PF00667 FAD binding domain KU039_03260 PF00175 Oxidoreductase NAD-binding domain KU039_03270 PF12805 FUSC-like inner membrane protein yccS KU039_03275 PF07690 Major Facilitator Superfamily KU039_03280 PF00881 Nitroreductase family KU039_03295 PF01235 Sodium:alanine symporter family KU039_03300 PF01734 Patatin-like phospholipase KU039_03305 PF00291 Pyridoxal-phosphate dependent enzyme KU039_03305 PF13291 ACT domain KU039_03310 PF05992 SbmA/BacA-like family KU039_03340 PF02934 GatB/GatE catalytic domain KU039_03340 PF02637 GatB domain KU039_03345 PF01425 Amidase KU039_03350 PF02686 Glu-tRNAGln amidotransferase C subunit KU039_03360 PF04085 rod shape-determining protein MreC KU039_03365 PF04093 rod shape-determining protein MreD KU039_03370 PF02545 Maf-like protein KU039_03375 PF10150 Ribonuclease E/G family KU039_03375 PF00575 S1 RNA binding domain KU039_03385 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KU039_03385 PF06974 Protein of unknown function (DUF1298) KU039_03390 PF01507 Phosphoadenosine phosphosulfate reductase family KU039_03405 PF02525 Flavodoxin-like fold KU039_03425 PF02673 Bacitracin resistance protein BacA KU039_03430 PF12833 Helix-turn-helix domain KU039_03430 PF06719 AraC-type transcriptional regulator N-terminus KU039_03435 PF00698 Acyl transferase domain KU039_03435 PF14765 Polyketide synthase dehydratase KU039_03435 PF08990 Erythronolide synthase docking KU039_03435 PF09277 Erythronolide synthase, docking KU039_03435 PF16197 Ketoacyl-synthetase C-terminal extension KU039_03435 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_03435 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_03435 PF08659 KR domain KU039_03435 PF00550 Phosphopantetheine attachment site KU039_03435 PF08240 Alcohol dehydrogenase GroES-like domain KU039_03440 PF01965 DJ-1/PfpI family KU039_03450 PF00324 Amino acid permease KU039_03455 PF04303 PrpF protein KU039_03460 PF00348 Polyprenyl synthetase KU039_03465 PF04237 YjbR KU039_03470 PF01145 SPFH domain / Band 7 family KU039_03480 PF01734 Patatin-like phospholipase KU039_03500 PF08019 Phosphoethanolamine transferase EptA/EptB KU039_03500 PF00884 Sulfatase KU039_03505 PF00072 Response regulator receiver domain KU039_03505 PF00486 Transcriptional regulatory protein, C terminal KU039_03510 PF08521 Two-component sensor kinase N-terminal KU039_03510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_03510 PF00512 His Kinase A (phospho-acceptor) domain KU039_03520 PF00909 Ammonium Transporter Family KU039_03525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_03525 PF03466 LysR substrate binding domain KU039_03545 PF00133 tRNA synthetases class I (I, L, M and V) KU039_03545 PF10458 Valyl tRNA synthetase tRNA binding arm KU039_03545 PF08264 Anticodon-binding domain of tRNA KU039_03565 PF01906 Putative heavy-metal-binding KU039_03570 PF01906 Putative heavy-metal-binding KU039_03575 PF02321 Outer membrane efflux protein KU039_03580 PF00873 AcrB/AcrD/AcrF family KU039_03585 PF00529 HlyD membrane-fusion protein of T1SS KU039_03585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_03590 PF01569 PAP2 superfamily KU039_03600 PF00348 Polyprenyl synthetase KU039_03610 PF00829 Ribosomal prokaryotic L21 protein KU039_03615 PF01016 Ribosomal L27 protein KU039_03620 PF03548 Outer membrane lipoprotein carrier protein LolA KU039_03630 PF02403 Seryl-tRNA synthetase N-terminal domain KU039_03630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU039_03635 PF10414 Sirohaem synthase dimerisation region KU039_03635 PF14824 Sirohaem biosynthesis protein central KU039_03635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU039_03640 PF00588 SpoU rRNA Methylase family KU039_03645 PF01638 HxlR-like helix-turn-helix KU039_03650 PF03358 NADPH-dependent FMN reductase KU039_03655 PF13520 Amino acid permease KU039_03660 PF00465 Iron-containing alcohol dehydrogenase KU039_03670 PF03099 Biotin/lipoate A/B protein ligase family KU039_03675 PF04359 Protein of unknown function (DUF493) KU039_03680 PF00140 Sigma-70 factor, region 1.2 KU039_03680 PF03979 Sigma-70 factor, region 1.1 KU039_03680 PF04542 Sigma-70 region 2 KU039_03680 PF04545 Sigma-70, region 4 KU039_03680 PF04546 Sigma-70, non-essential region KU039_03680 PF04539 Sigma-70 region 3 KU039_03700 PF00581 Rhodanese-like domain KU039_03700 PF17773 UPF0176 acylphosphatase like domain KU039_03710 PF00285 Citrate synthase, C-terminal domain KU039_03715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU039_03720 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KU039_03725 PF00890 FAD binding domain KU039_03725 PF02910 Fumarate reductase flavoprotein C-term KU039_03730 PF13085 2Fe-2S iron-sulfur cluster binding domain KU039_03745 PF00676 Dehydrogenase E1 component KU039_03745 PF16870 2-oxoglutarate dehydrogenase C-terminal KU039_03745 PF02779 Transketolase, pyrimidine binding domain KU039_03745 PF16078 2-oxoglutarate dehydrogenase N-terminus KU039_03750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU039_03750 PF02817 e3 binding domain KU039_03750 PF00364 Biotin-requiring enzyme KU039_03755 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_03755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU039_03760 PF08442 ATP-grasp domain KU039_03760 PF00549 CoA-ligase KU039_03765 PF02629 CoA binding domain KU039_03765 PF00549 CoA-ligase KU039_03770 PF00579 tRNA synthetases class I (W and Y) KU039_03775 PF05661 Protein of unknown function (DUF808) KU039_03780 PF04228 Putative neutral zinc metallopeptidase KU039_03785 PF00999 Sodium/hydrogen exchanger family KU039_03815 PF09587 Bacterial capsule synthesis protein PGA_cap KU039_03825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU039_03830 PF00582 Universal stress protein family KU039_03835 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_03840 PF03449 Transcription elongation factor, N-terminal KU039_03840 PF01272 Transcription elongation factor, GreA/GreB, C-term KU039_03845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU039_03845 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KU039_03845 PF02142 MGS-like domain KU039_03850 PF00117 Glutamine amidotransferase class-I KU039_03850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KU039_03865 PF01985 CRS1 / YhbY (CRM) domain KU039_03870 PF01728 FtsJ-like methyltransferase KU039_03875 PF01434 Peptidase family M41 KU039_03875 PF06480 FtsH Extracellular KU039_03875 PF17862 AAA+ lid domain KU039_03875 PF00004 ATPase family associated with various cellular activities (AAA) KU039_03880 PF00809 Pterin binding enzyme KU039_03900 PF09423 PhoD-like phosphatase KU039_03900 PF16655 PhoD-like phosphatase, N-terminal domain KU039_03915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KU039_03915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KU039_03945 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KU039_03945 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KU039_03950 PF01266 FAD dependent oxidoreductase KU039_03950 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KU039_03955 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KU039_03955 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KU039_03960 PF00781 Diacylglycerol kinase catalytic domain KU039_03965 PF00149 Calcineurin-like phosphoesterase KU039_03975 PF00166 Chaperonin 10 Kd subunit KU039_03980 PF00118 TCP-1/cpn60 chaperonin family KU039_03985 PF01219 Prokaryotic diacylglycerol kinase KU039_03995 PF03009 Glycerophosphoryl diester phosphodiesterase family KU039_04000 PF00873 AcrB/AcrD/AcrF family KU039_04010 PF01435 Peptidase family M48 KU039_04015 PF01464 Transglycosylase SLT domain KU039_04020 PF01171 PP-loop family KU039_04030 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU039_04030 PF01464 Transglycosylase SLT domain KU039_04035 PF01272 Transcription elongation factor, GreA/GreB, C-term KU039_04035 PF03449 Transcription elongation factor, N-terminal KU039_04050 PF00550 Phosphopantetheine attachment site KU039_04050 PF13193 AMP-binding enzyme C-terminal domain KU039_04050 PF00975 Thioesterase domain KU039_04050 PF00668 Condensation domain KU039_04050 PF00501 AMP-binding enzyme KU039_04085 PF00881 Nitroreductase family KU039_04105 PF02595 Glycerate kinase family KU039_04110 PF00384 Molybdopterin oxidoreductase KU039_04115 PF02634 FdhD/NarQ family KU039_04120 PF06803 Protein of unknown function (DUF1232) KU039_04125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU039_04125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU039_04125 PF11890 Domain of unknown function (DUF3410) KU039_04130 PF00152 tRNA synthetases class II (D, K and N) KU039_04140 PF18073 Rubredoxin metal binding domain KU039_04145 PF00324 Amino acid permease KU039_04155 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KU039_04155 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KU039_04160 PF01678 Diaminopimelate epimerase KU039_04165 PF01810 LysE type translocator KU039_04170 PF02899 Phage integrase, N-terminal SAM-like domain KU039_04170 PF00589 Phage integrase family KU039_04175 PF01012 Electron transfer flavoprotein domain KU039_04180 PF00766 Electron transfer flavoprotein FAD-binding domain KU039_04180 PF01012 Electron transfer flavoprotein domain KU039_04185 PF03989 DNA gyrase C-terminal domain, beta-propeller KU039_04185 PF00521 DNA gyrase/topoisomerase IV, subunit A KU039_04200 PF00535 Glycosyl transferase family 2 KU039_04220 PF13533 Biotin-lipoyl like KU039_04230 PF00266 Aminotransferase class-V KU039_04245 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KU039_04255 PF12704 MacB-like periplasmic core domain KU039_04255 PF02687 FtsX-like permease family KU039_04260 PF00005 ABC transporter KU039_04265 PF00753 Metallo-beta-lactamase superfamily KU039_04265 PF13567 Domain of unknown function (DUF4131) KU039_04265 PF03772 Competence protein KU039_04275 PF01343 Peptidase family S49 KU039_04275 PF06965 Na+/H+ antiporter 1 KU039_04280 PF12697 Alpha/beta hydrolase family KU039_04285 PF00551 Formyl transferase KU039_04290 PF00586 AIR synthase related protein, N-terminal domain KU039_04290 PF02769 AIR synthase related protein, C-terminal domain KU039_04295 PF01594 AI-2E family transporter KU039_04300 PF11638 DnaA N-terminal domain KU039_04300 PF00308 Bacterial dnaA protein KU039_04300 PF08299 Bacterial dnaA protein helix-turn-helix KU039_04330 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU039_04330 PF00588 SpoU rRNA Methylase family KU039_04335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KU039_04345 PF00691 OmpA family KU039_04350 PF04052 TolB amino-terminal domain KU039_04350 PF07676 WD40-like Beta Propeller Repeat KU039_04360 PF02472 Biopolymer transport protein ExbD/TolR KU039_04365 PF01618 MotA/TolQ/ExbB proton channel family KU039_04370 PF03061 Thioesterase superfamily KU039_04375 PF01546 Peptidase family M20/M25/M40 KU039_04375 PF07687 Peptidase dimerisation domain KU039_04380 PF05496 Holliday junction DNA helicase RuvB P-loop domain KU039_04380 PF17864 RuvB AAA lid domain KU039_04380 PF05491 RuvB C-terminal winged helix domain KU039_04385 PF01330 RuvA N terminal domain KU039_04385 PF07499 RuvA, C-terminal domain KU039_04390 PF01966 HD domain KU039_04395 PF02769 AIR synthase related protein, C-terminal domain KU039_04395 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KU039_04395 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KU039_04400 PF07690 Major Facilitator Superfamily KU039_04405 PF01784 NIF3 (NGG1p interacting factor 3) KU039_04410 PF00378 Enoyl-CoA hydratase/isomerase KU039_04415 PF01467 Cytidylyltransferase-like KU039_04415 PF00293 NUDIX domain KU039_04425 PF00578 AhpC/TSA family KU039_04440 PF06508 Queuosine biosynthesis protein QueC KU039_04450 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_04450 PF14602 Hexapeptide repeat of succinyl-transferase KU039_04450 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KU039_04460 PF03466 LysR substrate binding domain KU039_04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_04465 PF12857 TOBE-like domain KU039_04465 PF00005 ABC transporter KU039_04470 PF00528 Binding-protein-dependent transport system inner membrane component KU039_04475 PF00528 Binding-protein-dependent transport system inner membrane component KU039_04490 PF01063 Amino-transferase class IV KU039_04495 PF02618 YceG-like family KU039_04500 PF02223 Thymidylate kinase KU039_04510 PF02910 Fumarate reductase flavoprotein C-term KU039_04510 PF00890 FAD binding domain KU039_04515 PF13180 PDZ domain KU039_04525 PF00679 Elongation factor G C-terminus KU039_04525 PF00009 Elongation factor Tu GTP binding domain KU039_04525 PF03144 Elongation factor Tu domain 2 KU039_04525 PF06421 GTP-binding protein LepA C-terminus KU039_04530 PF10502 Signal peptidase, peptidase S26 KU039_04540 PF00035 Double-stranded RNA binding motif KU039_04540 PF14622 Ribonuclease-III-like KU039_04545 PF07650 KH domain KU039_04545 PF01926 50S ribosome-binding GTPase KU039_04555 PF11967 Recombination protein O N terminal KU039_04555 PF02565 Recombination protein O C terminal KU039_04560 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KU039_04565 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KU039_04570 PF00106 short chain dehydrogenase KU039_04600 PF00155 Aminotransferase class I and II KU039_04610 PF00990 Diguanylate cyclase, GGDEF domain KU039_04610 PF17151 Periplasmic sensor domain KU039_04620 PF02151 UvrB/uvrC motif KU039_04620 PF12344 Ultra-violet resistance protein B KU039_04620 PF17757 UvrB interaction domain KU039_04620 PF00271 Helicase conserved C-terminal domain KU039_04620 PF04851 Type III restriction enzyme, res subunit KU039_04630 PF00892 EamA-like transporter family KU039_04635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU039_04635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU039_04650 PF01926 50S ribosome-binding GTPase KU039_04650 PF01018 GTP1/OBG KU039_04655 PF00696 Amino acid kinase family KU039_04655 PF01472 PUA domain KU039_04665 PF07759 Protein of unknown function (DUF1615) KU039_04670 PF01207 Dihydrouridine synthase (Dus) KU039_04675 PF03060 Nitronate monooxygenase KU039_04690 PF02350 UDP-N-acetylglucosamine 2-epimerase KU039_04720 PF00875 DNA photolyase KU039_04720 PF03441 FAD binding domain of DNA photolyase KU039_04725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU039_04730 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_04735 PF00768 D-alanyl-D-alanine carboxypeptidase KU039_04735 PF07943 Penicillin-binding protein 5, C-terminal domain KU039_04745 PF03971 Monomeric isocitrate dehydrogenase KU039_04750 PF00849 RNA pseudouridylate synthase KU039_04755 PF00180 Isocitrate/isopropylmalate dehydrogenase KU039_04775 PF06779 Uncharacterised MFS-type transporter YbfB KU039_04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_04780 PF03466 LysR substrate binding domain KU039_04785 PF00375 Sodium:dicarboxylate symporter family KU039_04790 PF02567 Phenazine biosynthesis-like protein KU039_04795 PF00675 Insulinase (Peptidase family M16) KU039_04795 PF05193 Peptidase M16 inactive domain KU039_04820 PF02581 Thiamine monophosphate synthase KU039_04825 PF00202 Aminotransferase class-III KU039_04835 PF00849 RNA pseudouridylate synthase KU039_04840 PF12137 RNA polymerase recycling family C-terminal KU039_04840 PF00176 SNF2 family N-terminal domain KU039_04840 PF18339 RapA N-terminal Tudor like domain 1 KU039_04840 PF18337 RapA N-terminal Tudor like domain KU039_04840 PF00271 Helicase conserved C-terminal domain KU039_04850 PF00440 Bacterial regulatory proteins, tetR family KU039_04855 PF00970 Oxidoreductase FAD-binding domain KU039_04855 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_04855 PF00175 Oxidoreductase NAD-binding domain KU039_04860 PF00487 Fatty acid desaturase KU039_04870 PF00440 Bacterial regulatory proteins, tetR family KU039_04870 PF17754 MftR C-terminal domain KU039_04880 PF00202 Aminotransferase class-III KU039_04885 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU039_04890 PF00171 Aldehyde dehydrogenase family KU039_04895 PF01037 Lrp/AsnC ligand binding domain KU039_04900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU039_04900 PF00205 Thiamine pyrophosphate enzyme, central domain KU039_04900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU039_04905 PF00324 Amino acid permease KU039_04910 PF12849 PBP superfamily domain KU039_04915 PF00528 Binding-protein-dependent transport system inner membrane component KU039_04920 PF00528 Binding-protein-dependent transport system inner membrane component KU039_04925 PF00005 ABC transporter KU039_04930 PF01343 Peptidase family S49 KU039_04930 PF08496 Peptidase family S49 N-terminal KU039_04945 PF08328 Adenylosuccinate lyase C-terminal KU039_04945 PF00206 Lyase KU039_04950 PF04356 Protein of unknown function (DUF489) KU039_04960 PF13344 Haloacid dehalogenase-like hydrolase KU039_04960 PF00293 NUDIX domain KU039_04965 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_04970 PF07943 Penicillin-binding protein 5, C-terminal domain KU039_04970 PF00768 D-alanyl-D-alanine carboxypeptidase KU039_04985 PF01975 Survival protein SurE KU039_04990 PF01476 LysM domain KU039_04990 PF01551 Peptidase family M23 KU039_04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_04995 PF03466 LysR substrate binding domain KU039_05000 PF13654 AAA domain KU039_05000 PF05362 Lon protease (S16) C-terminal proteolytic domain KU039_05005 PF07690 Major Facilitator Superfamily KU039_05010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU039_05015 PF13593 SBF-like CPA transporter family (DUF4137) KU039_05020 PF01197 Ribosomal protein L31 KU039_05035 PF04055 Radical SAM superfamily KU039_05040 PF01132 Elongation factor P (EF-P) OB domain KU039_05040 PF08207 Elongation factor P (EF-P) KOW-like domain KU039_05040 PF09285 Elongation factor P, C-terminal KU039_05045 PF02554 Carbon starvation protein CstA KU039_05045 PF13722 5TM C-terminal transporter carbon starvation CstA KU039_05050 PF04328 Selenoprotein, putative KU039_05080 PF17853 GGDEF-like domain KU039_05080 PF06018 CodY GAF-like domain KU039_05080 PF13556 PucR C-terminal helix-turn-helix domain KU039_05095 PF00171 Aldehyde dehydrogenase family KU039_05100 PF00324 Amino acid permease KU039_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_05105 PF03466 LysR substrate binding domain KU039_05110 PF02028 BCCT, betaine/carnitine/choline family transporter KU039_05130 PF00355 Rieske [2Fe-2S] domain KU039_05130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU039_05135 PF00171 Aldehyde dehydrogenase family KU039_05140 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_05140 PF18113 Rubredoxin binding C-terminal domain KU039_05145 PF01266 FAD dependent oxidoreductase KU039_05145 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KU039_05165 PF00892 EamA-like transporter family KU039_05175 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KU039_05180 PF00083 Sugar (and other) transporter KU039_05185 PF13378 Enolase C-terminal domain-like KU039_05185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU039_05190 PF00698 Acyl transferase domain KU039_05190 PF08240 Alcohol dehydrogenase GroES-like domain KU039_05190 PF08990 Erythronolide synthase docking KU039_05190 PF09277 Erythronolide synthase, docking KU039_05190 PF16197 Ketoacyl-synthetase C-terminal extension KU039_05190 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_05190 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_05190 PF08659 KR domain KU039_05190 PF00550 Phosphopantetheine attachment site KU039_05190 PF14765 Polyketide synthase dehydratase KU039_05195 PF00440 Bacterial regulatory proteins, tetR family KU039_05215 PF17954 Quercetinase C-terminal cupin domain KU039_05215 PF02678 Pirin KU039_05225 PF08348 YheO-like PAS domain KU039_05225 PF13309 HTH domain KU039_05235 PF00501 AMP-binding enzyme KU039_05235 PF13193 AMP-binding enzyme C-terminal domain KU039_05235 PF00668 Condensation domain KU039_05235 PF00550 Phosphopantetheine attachment site KU039_05240 PF00501 AMP-binding enzyme KU039_05240 PF00975 Thioesterase domain KU039_05240 PF00550 Phosphopantetheine attachment site KU039_05240 PF00668 Condensation domain KU039_05240 PF13193 AMP-binding enzyme C-terminal domain KU039_05245 PF01032 FecCD transport family KU039_05250 PF01032 FecCD transport family KU039_05255 PF00005 ABC transporter KU039_05260 PF01497 Periplasmic binding protein KU039_05265 PF00593 TonB dependent receptor KU039_05265 PF07715 TonB-dependent Receptor Plug Domain KU039_05270 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU039_05275 PF00550 Phosphopantetheine attachment site KU039_05275 PF00668 Condensation domain KU039_05275 PF00501 AMP-binding enzyme KU039_05280 PF13193 AMP-binding enzyme C-terminal domain KU039_05280 PF00501 AMP-binding enzyme KU039_05285 PF00857 Isochorismatase family KU039_05285 PF00550 Phosphopantetheine attachment site KU039_05290 PF00282 Pyridoxal-dependent decarboxylase conserved domain KU039_05300 PF00005 ABC transporter KU039_05305 PF00005 ABC transporter KU039_05310 PF00975 Thioesterase domain KU039_05320 PF00425 chorismate binding enzyme KU039_05330 PF01208 Uroporphyrinogen decarboxylase (URO-D) KU039_05335 PF05675 Protein of unknown function (DUF817) KU039_05350 PF00144 Beta-lactamase KU039_05360 PF01227 GTP cyclohydrolase I KU039_05365 PF01799 [2Fe-2S] binding domain KU039_05365 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_05370 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KU039_05370 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KU039_05385 PF00218 Indole-3-glycerol phosphate synthase KU039_05390 PF00591 Glycosyl transferase family, a/b domain KU039_05390 PF02885 Glycosyl transferase family, helical bundle domain KU039_05395 PF07715 TonB-dependent Receptor Plug Domain KU039_05395 PF00593 TonB dependent receptor KU039_05400 PF11838 ERAP1-like C-terminal domain KU039_05400 PF01433 Peptidase family M1 domain KU039_05405 PF00117 Glutamine amidotransferase class-I KU039_05415 PF00854 POT family KU039_05420 PF00120 Glutamine synthetase, catalytic domain KU039_05420 PF03951 Glutamine synthetase, beta-Grasp domain KU039_05425 PF04345 Chorismate lyase KU039_05430 PF01040 UbiA prenyltransferase family KU039_05465 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KU039_05465 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KU039_05470 PF01784 NIF3 (NGG1p interacting factor 3) KU039_05475 PF13180 PDZ domain KU039_05480 PF12627 Probable RNA and SrmB- binding site of polymerase A KU039_05480 PF01743 Poly A polymerase head domain KU039_05485 PF01515 Phosphate acetyl/butaryl transferase KU039_05485 PF03949 Malic enzyme, NAD binding domain KU039_05485 PF00390 Malic enzyme, N-terminal domain KU039_05490 PF00990 Diguanylate cyclase, GGDEF domain KU039_05490 PF03707 Bacterial signalling protein N terminal repeat KU039_05490 PF00563 EAL domain KU039_05495 PF04452 RNA methyltransferase KU039_05500 PF02219 Methylenetetrahydrofolate reductase KU039_05505 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KU039_05505 PF05221 S-adenosyl-L-homocysteine hydrolase KU039_05520 PF09317 Domain of unknown function (DUF1974) KU039_05520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_05520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_05525 PF04055 Radical SAM superfamily KU039_05530 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_05530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU039_05540 PF07690 Major Facilitator Superfamily KU039_05550 PF00557 Metallopeptidase family M24 KU039_05555 PF00318 Ribosomal protein S2 KU039_05560 PF00889 Elongation factor TS KU039_05570 PF12833 Helix-turn-helix domain KU039_05590 PF05036 Sporulation related domain KU039_05590 PF03330 Lytic transglycolase KU039_05595 PF13406 Transglycosylase SLT domain KU039_05600 PF01098 Cell cycle protein KU039_05610 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KU039_05610 PF14489 QueF-like protein KU039_05615 PF01061 ABC-2 type transporter KU039_05620 PF00005 ABC transporter KU039_05650 PF00464 Serine hydroxymethyltransferase KU039_05655 PF02321 Outer membrane efflux protein KU039_05660 PF00873 AcrB/AcrD/AcrF family KU039_05665 PF13533 Biotin-lipoyl like KU039_05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_05670 PF03466 LysR substrate binding domain KU039_05675 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU039_05680 PF00528 Binding-protein-dependent transport system inner membrane component KU039_05685 PF00528 Binding-protein-dependent transport system inner membrane component KU039_05690 PF00005 ABC transporter KU039_05695 PF00893 Small Multidrug Resistance protein KU039_05700 PF00037 4Fe-4S binding domain KU039_05705 PF01136 Peptidase family U32 KU039_05705 PF16325 Peptidase family U32 C-terminal domain KU039_05710 PF00155 Aminotransferase class I and II KU039_05710 PF00392 Bacterial regulatory proteins, gntR family KU039_05715 PF02567 Phenazine biosynthesis-like protein KU039_05720 PF00970 Oxidoreductase FAD-binding domain KU039_05720 PF00175 Oxidoreductase NAD-binding domain KU039_05725 PF01980 tRNA-methyltransferase O KU039_05725 PF18389 TrmO C-terminal domain KU039_05735 PF00437 Type II/IV secretion system protein KU039_05735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU039_05745 PF00486 Transcriptional regulatory protein, C terminal KU039_05745 PF00072 Response regulator receiver domain KU039_05750 PF08521 Two-component sensor kinase N-terminal KU039_05750 PF00512 His Kinase A (phospho-acceptor) domain KU039_05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_05760 PF00293 NUDIX domain KU039_05770 PF00912 Transglycosylase KU039_05770 PF00905 Penicillin binding protein transpeptidase domain KU039_05770 PF14814 Bifunctional transglycosylase second domain KU039_05775 PF01513 ATP-NAD kinase KU039_05780 PF07023 Protein of unknown function (DUF1315) KU039_05785 PF00591 Glycosyl transferase family, a/b domain KU039_05785 PF02885 Glycosyl transferase family, helical bundle domain KU039_05790 PF00375 Sodium:dicarboxylate symporter family KU039_05795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_05795 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_05795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_05800 PF00756 Putative esterase KU039_05805 PF01842 ACT domain KU039_05805 PF01817 Chorismate mutase type II KU039_05805 PF00800 Prephenate dehydratase KU039_05810 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU039_05820 PF07687 Peptidase dimerisation domain KU039_05820 PF01546 Peptidase family M20/M25/M40 KU039_05825 PF12706 Beta-lactamase superfamily domain KU039_05835 PF03883 Peroxide stress protein YaaA KU039_05845 PF05690 Thiazole biosynthesis protein ThiG KU039_05855 PF04241 Protein of unknown function (DUF423) KU039_05860 PF04545 Sigma-70, region 4 KU039_05860 PF04542 Sigma-70 region 2 KU039_05860 PF00140 Sigma-70 factor, region 1.2 KU039_05870 PF00313 'Cold-shock' DNA-binding domain KU039_05875 PF00271 Helicase conserved C-terminal domain KU039_05875 PF00270 DEAD/DEAH box helicase KU039_05885 PF00881 Nitroreductase family KU039_05890 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KU039_05890 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KU039_05900 PF00589 Phage integrase family KU039_06225 PF01180 Dihydroorotate dehydrogenase KU039_06230 PF02674 Colicin V production protein KU039_06235 PF00156 Phosphoribosyl transferase domain KU039_06250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU039_06250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU039_06255 PF01435 Peptidase family M48 KU039_06260 PF09424 Yqey-like protein KU039_06265 PF01165 Ribosomal protein S21 KU039_06270 PF00814 Glycoprotease family KU039_06290 PF00069 Protein kinase domain KU039_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_06315 PF03466 LysR substrate binding domain KU039_06320 PF00202 Aminotransferase class-III KU039_06325 PF00171 Aldehyde dehydrogenase family KU039_06330 PF13610 DDE domain KU039_06345 PF00375 Sodium:dicarboxylate symporter family KU039_06355 PF16123 Hydroxyacylglutathione hydrolase C-terminus KU039_06355 PF00753 Metallo-beta-lactamase superfamily KU039_06360 PF00528 Binding-protein-dependent transport system inner membrane component KU039_06365 PF00005 ABC transporter KU039_06365 PF09383 NIL domain KU039_06370 PF03180 NLPA lipoprotein KU039_06375 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KU039_06375 PF02843 Phosphoribosylglycinamide synthetase, C domain KU039_06375 PF02844 Phosphoribosylglycinamide synthetase, N domain KU039_06380 PF01808 AICARFT/IMPCHase bienzyme KU039_06380 PF02142 MGS-like domain KU039_06385 PF02954 Bacterial regulatory protein, Fis family KU039_06405 PF01134 Glucose inhibited division protein A KU039_06405 PF13932 GidA associated domain KU039_06415 PF14403 Circularly permuted ATP-grasp type 2 KU039_06425 PF01841 Transglutaminase-like superfamily KU039_06425 PF08379 Bacterial transglutaminase-like N-terminal region KU039_06435 PF00842 Alanine racemase, C-terminal domain KU039_06435 PF01168 Alanine racemase, N-terminal domain KU039_06440 PF00772 DnaB-like helicase N terminal domain KU039_06440 PF03796 DnaB-like helicase C terminal domain KU039_06445 PF03948 Ribosomal protein L9, C-terminal domain KU039_06445 PF01281 Ribosomal protein L9, N-terminal domain KU039_06450 PF01084 Ribosomal protein S18 KU039_06455 PF01250 Ribosomal protein S6 KU039_06460 PF01040 UbiA prenyltransferase family KU039_06465 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KU039_06470 PF00510 Cytochrome c oxidase subunit III KU039_06475 PF00115 Cytochrome C and Quinol oxidase polypeptide I KU039_06480 PF06481 COX Aromatic Rich Motif KU039_06480 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KU039_06490 PF00391 PEP-utilising enzyme, mobile domain KU039_06490 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KU039_06490 PF02896 PEP-utilising enzyme, TIM barrel domain KU039_06495 PF03618 Kinase/pyrophosphorylase KU039_06505 PF14883 Hypothetical glycosyl hydrolase family 13 KU039_06505 PF01522 Polysaccharide deacetylase KU039_06510 PF00535 Glycosyl transferase family 2 KU039_06515 PF13994 PgaD-like protein KU039_06525 PF00296 Luciferase-like monooxygenase KU039_06540 PF03466 LysR substrate binding domain KU039_06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_06550 PF00472 RF-1 domain KU039_06550 PF03462 PCRF domain KU039_06555 PF17827 PrmC N-terminal domain KU039_06555 PF13847 Methyltransferase domain KU039_06560 PF00528 Binding-protein-dependent transport system inner membrane component KU039_06565 PF09084 NMT1/THI5 like KU039_06570 PF12833 Helix-turn-helix domain KU039_06575 PF00106 short chain dehydrogenase KU039_06580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_06580 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_06580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_06585 PF13193 AMP-binding enzyme C-terminal domain KU039_06585 PF00501 AMP-binding enzyme KU039_06590 PF01613 Flavin reductase like domain KU039_06595 PF00899 ThiF family KU039_06600 PF03109 ABC1 family KU039_06615 PF03814 Potassium-transporting ATPase A subunit KU039_06625 PF02669 K+-transporting ATPase, c chain KU039_06630 PF02702 Osmosensitive K+ channel His kinase sensor domain KU039_06630 PF00512 His Kinase A (phospho-acceptor) domain KU039_06630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_06630 PF13493 Domain of unknown function (DUF4118) KU039_06635 PF00072 Response regulator receiver domain KU039_06635 PF00486 Transcriptional regulatory protein, C terminal KU039_06640 PF00120 Glutamine synthetase, catalytic domain KU039_06650 PF03232 Ubiquinone biosynthesis protein COQ7 KU039_06655 PF07690 Major Facilitator Superfamily KU039_06660 PF17243 POTRA domain TamA domain 1 KU039_06660 PF07244 Surface antigen variable number repeat KU039_06660 PF01103 Surface antigen KU039_06675 PF11791 Aconitate B N-terminal domain KU039_06675 PF06434 Aconitate hydratase 2 N-terminus KU039_06675 PF00330 Aconitase family (aconitate hydratase) KU039_06685 PF00027 Cyclic nucleotide-binding domain KU039_06685 PF00520 Ion transport protein KU039_06690 PF07690 Major Facilitator Superfamily KU039_06705 PF03466 LysR substrate binding domain KU039_06705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_06710 PF04284 Protein of unknown function (DUF441) KU039_06720 PF01479 S4 domain KU039_06720 PF00849 RNA pseudouridylate synthase KU039_06735 PF00849 RNA pseudouridylate synthase KU039_06735 PF01479 S4 domain KU039_06740 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KU039_06745 PF08676 MutL C terminal dimerisation domain KU039_06745 PF01119 DNA mismatch repair protein, C-terminal domain KU039_06755 PF17209 Hfq protein KU039_06765 PF00881 Nitroreductase family KU039_06775 PF00149 Calcineurin-like phosphoesterase KU039_06780 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU039_06785 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU039_06785 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KU039_06790 PF00117 Glutamine amidotransferase class-I KU039_06790 PF00958 GMP synthase C terminal domain KU039_06790 PF02540 NAD synthase KU039_06795 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KU039_06800 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KU039_06805 PF13520 Amino acid permease KU039_06810 PF00171 Aldehyde dehydrogenase family KU039_06825 PF00465 Iron-containing alcohol dehydrogenase KU039_06830 PF05970 PIF1-like helicase KU039_06830 PF14493 Helix-turn-helix domain KU039_06840 PF06445 GyrI-like small molecule binding domain KU039_06845 PF02110 Hydroxyethylthiazole kinase family KU039_06860 PF11940 Domain of unknown function (DUF3458) Ig-like fold KU039_06860 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KU039_06860 PF01433 Peptidase family M1 domain KU039_06870 PF00106 short chain dehydrogenase KU039_06880 PF01817 Chorismate mutase type II KU039_06885 PF01037 Lrp/AsnC ligand binding domain KU039_06895 PF00440 Bacterial regulatory proteins, tetR family KU039_06900 PF07715 TonB-dependent Receptor Plug Domain KU039_06900 PF00593 TonB dependent receptor KU039_06905 PF00924 Mechanosensitive ion channel KU039_06940 PF07715 TonB-dependent Receptor Plug Domain KU039_06940 PF00593 TonB dependent receptor KU039_06960 PF00005 ABC transporter KU039_06960 PF12848 ABC transporter KU039_06965 PF00582 Universal stress protein family KU039_06990 PF00689 Cation transporting ATPase, C-terminus KU039_06990 PF00690 Cation transporter/ATPase, N-terminus KU039_06995 PF02308 MgtC family KU039_07000 PF03594 Benzoate membrane transport protein KU039_07005 PF01037 Lrp/AsnC ligand binding domain KU039_07010 PF01810 LysE type translocator KU039_07015 PF00923 Transaldolase/Fructose-6-phosphate aldolase KU039_07020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_07020 PF03466 LysR substrate binding domain KU039_07030 PF02803 Thiolase, C-terminal domain KU039_07030 PF00108 Thiolase, N-terminal domain KU039_07040 PF01575 MaoC like domain KU039_07045 PF00144 Beta-lactamase KU039_07055 PF07690 Major Facilitator Superfamily KU039_07060 PF12169 DNA polymerase III subunits gamma and tau domain III KU039_07060 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KU039_07060 PF12170 DNA polymerase III tau subunit V interacting with alpha KU039_07070 PF05506 Domain of unknown function (DUF756) KU039_07070 PF04185 Phosphoesterase family KU039_07075 PF03061 Thioesterase superfamily KU039_07080 PF00465 Iron-containing alcohol dehydrogenase KU039_07090 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU039_07095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KU039_07095 PF01565 FAD binding domain KU039_07110 PF01645 Conserved region in glutamate synthase KU039_07175 PF12161 HsdM N-terminal domain KU039_07175 PF02384 N-6 DNA Methylase KU039_07220 PF01695 IstB-like ATP binding protein KU039_07430 PF01476 LysM domain KU039_07430 PF01551 Peptidase family M23 KU039_07430 PF08525 Opacity-associated protein A N-terminal motif KU039_07495 PF12832 MFS_1 like family KU039_07505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU039_07505 PF02785 Biotin carboxylase C-terminal domain KU039_07505 PF00289 Biotin carboxylase, N-terminal domain KU039_07510 PF00364 Biotin-requiring enzyme KU039_07515 PF01220 Dehydroquinase class II KU039_07520 PF11799 impB/mucB/samB family C-terminal domain KU039_07520 PF13438 Domain of unknown function (DUF4113) KU039_07520 PF00817 impB/mucB/samB family KU039_07530 PF00005 ABC transporter KU039_07535 PF00072 Response regulator receiver domain KU039_07535 PF00486 Transcriptional regulatory protein, C terminal KU039_07545 PF04324 BFD-like [2Fe-2S] binding domain KU039_07545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU039_07545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU039_07545 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_07545 PF13806 Rieske-like [2Fe-2S] domain KU039_07545 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU039_07550 PF04324 BFD-like [2Fe-2S] binding domain KU039_07550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KU039_07550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KU039_07550 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_07550 PF18267 Rubredoxin NAD+ reductase C-terminal domain KU039_07555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU039_07555 PF00384 Molybdopterin oxidoreductase KU039_07555 PF01568 Molydopterin dinucleotide binding domain KU039_07555 PF04324 BFD-like [2Fe-2S] binding domain KU039_07560 PF12804 MobA-like NTP transferase domain KU039_07565 PF01568 Molydopterin dinucleotide binding domain KU039_07565 PF00384 Molybdopterin oxidoreductase KU039_07565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU039_07570 PF06463 Molybdenum Cofactor Synthesis C KU039_07570 PF04055 Radical SAM superfamily KU039_07580 PF02391 MoaE protein KU039_07585 PF00994 Probable molybdopterin binding domain KU039_07585 PF01967 MoaC family KU039_07590 PF03453 MoeA N-terminal region (domain I and II) KU039_07590 PF03454 MoeA C-terminal region (domain IV) KU039_07590 PF00994 Probable molybdopterin binding domain KU039_07595 PF01638 HxlR-like helix-turn-helix KU039_07600 PF00392 Bacterial regulatory proteins, gntR family KU039_07600 PF00155 Aminotransferase class I and II KU039_07605 PF00892 EamA-like transporter family KU039_07625 PF02635 DsrE/DsrF-like family KU039_07630 PF16363 GDP-mannose 4,6 dehydratase KU039_07635 PF10415 Fumarase C C-terminus KU039_07635 PF00206 Lyase KU039_07655 PF01266 FAD dependent oxidoreductase KU039_07665 PF02542 YgbB family KU039_07675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU039_07675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU039_07695 PF02954 Bacterial regulatory protein, Fis family KU039_07695 PF00072 Response regulator receiver domain KU039_07695 PF00158 Sigma-54 interaction domain KU039_07700 PF00512 His Kinase A (phospho-acceptor) domain KU039_07700 PF00989 PAS fold KU039_07700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_07705 PF04055 Radical SAM superfamily KU039_07705 PF18693 TRAM domain KU039_07705 PF00919 Uncharacterized protein family UPF0004 KU039_07710 PF00696 Amino acid kinase family KU039_07715 PF01765 Ribosome recycling factor KU039_07720 PF01255 Putative undecaprenyl diphosphate synthase KU039_07730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KU039_07730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KU039_07730 PF13288 DXP reductoisomerase C-terminal domain KU039_07735 PF02163 Peptidase family M50 KU039_07735 PF13180 PDZ domain KU039_07735 PF17820 PDZ domain KU039_07740 PF01103 Surface antigen KU039_07740 PF07244 Surface antigen variable number repeat KU039_07750 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_07750 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KU039_07755 PF07977 FabA-like domain KU039_07760 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KU039_07760 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_07775 PF02631 RecX family KU039_07780 PF00154 recA bacterial DNA recombination protein KU039_07785 PF01479 S4 domain KU039_07790 PF13419 Haloacid dehalogenase-like hydrolase KU039_07815 PF01037 Lrp/AsnC ligand binding domain KU039_07820 PF00266 Aminotransferase class-V KU039_07825 PF00324 Amino acid permease KU039_07835 PF05922 Peptidase inhibitor I9 KU039_07835 PF00082 Subtilase family KU039_07840 PF01740 STAS domain KU039_07840 PF00916 Sulfate permease family KU039_07845 PF02586 SOS response associated peptidase (SRAP) KU039_07855 PF07995 Glucose / Sorbosone dehydrogenase KU039_07865 PF03707 Bacterial signalling protein N terminal repeat KU039_07865 PF00990 Diguanylate cyclase, GGDEF domain KU039_07865 PF00563 EAL domain KU039_07885 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KU039_07885 PF02378 Phosphotransferase system, EIIC KU039_07890 PF00294 pfkB family carbohydrate kinase KU039_07895 PF05524 PEP-utilising enzyme, N-terminal KU039_07895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KU039_07895 PF00381 PTS HPr component phosphorylation site KU039_07895 PF00391 PEP-utilising enzyme, mobile domain KU039_07895 PF02896 PEP-utilising enzyme, TIM barrel domain KU039_07920 PF05525 Branched-chain amino acid transport protein KU039_07925 PF00557 Metallopeptidase family M24 KU039_07930 PF03466 LysR substrate binding domain KU039_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_07940 PF00462 Glutaredoxin KU039_07945 PF00202 Aminotransferase class-III KU039_07950 PF00478 IMP dehydrogenase / GMP reductase domain KU039_07950 PF00571 CBS domain KU039_07975 PF02881 SRP54-type protein, helical bundle domain KU039_07975 PF00448 SRP54-type protein, GTPase domain KU039_07985 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KU039_08000 PF08173 Membrane bound YbgT-like protein KU039_08005 PF02322 Cytochrome bd terminal oxidase subunit II KU039_08010 PF01654 Cytochrome bd terminal oxidase subunit I KU039_08020 PF07290 Protein of unknown function (DUF1449) KU039_08030 PF00294 pfkB family carbohydrate kinase KU039_08035 PF00593 TonB dependent receptor KU039_08035 PF07715 TonB-dependent Receptor Plug Domain KU039_08040 PF08367 Peptidase M16C associated KU039_08040 PF00675 Insulinase (Peptidase family M16) KU039_08040 PF05193 Peptidase M16 inactive domain KU039_08045 PF02253 Phospholipase A1 KU039_08050 PF02386 Cation transport protein KU039_08055 PF02080 TrkA-C domain KU039_08055 PF02254 TrkA-N domain KU039_08060 PF00291 Pyridoxal-phosphate dependent enzyme KU039_08060 PF00585 C-terminal regulatory domain of Threonine dehydratase KU039_08065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KU039_08080 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU039_08080 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU039_08090 PF02617 ATP-dependent Clp protease adaptor protein ClpS KU039_08095 PF07724 AAA domain (Cdc48 subfamily) KU039_08095 PF10431 C-terminal, D2-small domain, of ClpB protein KU039_08095 PF00004 ATPase family associated with various cellular activities (AAA) KU039_08095 PF17871 AAA lid domain KU039_08095 PF02861 Clp amino terminal domain, pathogenicity island component KU039_08100 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KU039_08105 PF00793 DAHP synthetase I family KU039_08120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU039_08120 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_08150 PF00117 Glutamine amidotransferase class-I KU039_08150 PF06418 CTP synthase N-terminus KU039_08155 PF00793 DAHP synthetase I family KU039_08160 PF00113 Enolase, C-terminal TIM barrel domain KU039_08160 PF03952 Enolase, N-terminal domain KU039_08165 PF04239 Protein of unknown function (DUF421) KU039_08170 PF04977 Septum formation initiator KU039_08175 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KU039_08180 PF01144 Coenzyme A transferase KU039_08185 PF01144 Coenzyme A transferase KU039_08190 PF02803 Thiolase, C-terminal domain KU039_08190 PF00108 Thiolase, N-terminal domain KU039_08195 PF00206 Lyase KU039_08195 PF10397 Adenylosuccinate lyase C-terminus KU039_08200 PF00561 alpha/beta hydrolase fold KU039_08205 PF07690 Major Facilitator Superfamily KU039_08210 PF02627 Carboxymuconolactone decarboxylase family KU039_08215 PF00775 Dioxygenase KU039_08215 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KU039_08220 PF00775 Dioxygenase KU039_08225 PF01487 Type I 3-dehydroquinase KU039_08230 PF05048 Periplasmic copper-binding protein (NosD) KU039_08235 PF04966 Carbohydrate-selective porin, OprB family KU039_08240 PF01011 PQQ enzyme repeat KU039_08240 PF13360 PQQ-like domain KU039_08250 PF04143 Sulphur transport KU039_08260 PF00753 Metallo-beta-lactamase superfamily KU039_08265 PF09339 IclR helix-turn-helix domain KU039_08265 PF01614 Bacterial transcriptional regulator KU039_08270 PF03466 LysR substrate binding domain KU039_08270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_08275 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_08275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_08275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_08290 PF00106 short chain dehydrogenase KU039_08300 PF07690 Major Facilitator Superfamily KU039_08310 PF01425 Amidase KU039_08315 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU039_08330 PF00355 Rieske [2Fe-2S] domain KU039_08330 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU039_08345 PF00175 Oxidoreductase NAD-binding domain KU039_08345 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_08350 PF01613 Flavin reductase like domain KU039_08355 PF02311 AraC-like ligand binding domain KU039_08355 PF12833 Helix-turn-helix domain KU039_08360 PF01179 Copper amine oxidase, enzyme domain KU039_08360 PF02728 Copper amine oxidase, N3 domain KU039_08360 PF02727 Copper amine oxidase, N2 domain KU039_08360 PF07833 Copper amine oxidase N-terminal domain KU039_08370 PF00171 Aldehyde dehydrogenase family KU039_08375 PF01804 Penicillin amidase KU039_08380 PF12146 Serine aminopeptidase, S33 KU039_08385 PF02803 Thiolase, C-terminal domain KU039_08385 PF00108 Thiolase, N-terminal domain KU039_08390 PF01144 Coenzyme A transferase KU039_08395 PF01144 Coenzyme A transferase KU039_08400 PF00775 Dioxygenase KU039_08400 PF04444 Catechol dioxygenase N terminus KU039_08405 PF02426 Muconolactone delta-isomerase KU039_08410 PF13378 Enolase C-terminal domain-like KU039_08410 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KU039_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_08415 PF03466 LysR substrate binding domain KU039_08425 PF07729 FCD domain KU039_08425 PF00392 Bacterial regulatory proteins, gntR family KU039_08430 PF00920 Dehydratase family KU039_08435 PF07690 Major Facilitator Superfamily KU039_08445 PF00171 Aldehyde dehydrogenase family KU039_08465 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_08465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_08465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_08475 PF02954 Bacterial regulatory protein, Fis family KU039_08475 PF06506 Propionate catabolism activator KU039_08475 PF00158 Sigma-54 interaction domain KU039_08480 PF00501 AMP-binding enzyme KU039_08480 PF13193 AMP-binding enzyme C-terminal domain KU039_08485 PF04341 Protein of unknown function, DUF485 KU039_08500 PF00474 Sodium:solute symporter family KU039_08505 PF00107 Zinc-binding dehydrogenase KU039_08505 PF08240 Alcohol dehydrogenase GroES-like domain KU039_08510 PF00171 Aldehyde dehydrogenase family KU039_08520 PF00561 alpha/beta hydrolase fold KU039_08525 PF00199 Catalase KU039_08525 PF06628 Catalase-related immune-responsive KU039_08540 PF07859 alpha/beta hydrolase fold KU039_08545 PF01047 MarR family KU039_08550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU039_08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_08555 PF00106 short chain dehydrogenase KU039_08560 PF01872 RibD C-terminal domain KU039_08565 PF09278 MerR, DNA binding KU039_08565 PF00376 MerR family regulatory protein KU039_08575 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_08585 PF12706 Beta-lactamase superfamily domain KU039_08590 PF00440 Bacterial regulatory proteins, tetR family KU039_08590 PF08359 YsiA-like protein, C-terminal region KU039_08600 PF00857 Isochorismatase family KU039_08605 PF03466 LysR substrate binding domain KU039_08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_08610 PF07995 Glucose / Sorbosone dehydrogenase KU039_08615 PF00999 Sodium/hydrogen exchanger family KU039_08615 PF02254 TrkA-N domain KU039_08625 PF07687 Peptidase dimerisation domain KU039_08625 PF01546 Peptidase family M20/M25/M40 KU039_08635 PF17287 POTRA domain KU039_08635 PF08479 POTRA domain, ShlB-type KU039_08635 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KU039_08640 PF13018 Extended Signal Peptide of Type V secretion system KU039_08640 PF13332 Hemagglutinin repeat KU039_08640 PF05860 haemagglutination activity domain KU039_08640 PF04829 Pre-toxin domain with VENN motif KU039_08655 PF07690 Major Facilitator Superfamily KU039_08660 PF04909 Amidohydrolase KU039_08670 PF00392 Bacterial regulatory proteins, gntR family KU039_08670 PF07702 UTRA domain KU039_08675 PF08450 SMP-30/Gluconolactonase/LRE-like region KU039_08685 PF03466 LysR substrate binding domain KU039_08685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_08705 PF07690 Major Facilitator Superfamily KU039_08710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KU039_08710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KU039_08710 PF01842 ACT domain KU039_08715 PF03737 Aldolase/RraA KU039_08735 PF00529 HlyD membrane-fusion protein of T1SS KU039_08735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_08750 PF00171 Aldehyde dehydrogenase family KU039_08755 PF00920 Dehydratase family KU039_08765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_08765 PF03466 LysR substrate binding domain KU039_08770 PF01370 NAD dependent epimerase/dehydratase family KU039_08775 PF07690 Major Facilitator Superfamily KU039_08780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU039_08780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU039_08785 PF12833 Helix-turn-helix domain KU039_08785 PF06719 AraC-type transcriptional regulator N-terminus KU039_08800 PF00107 Zinc-binding dehydrogenase KU039_08800 PF08240 Alcohol dehydrogenase GroES-like domain KU039_08810 PF01032 FecCD transport family KU039_08815 PF00005 ABC transporter KU039_08835 PF14572 Phosphoribosyl synthetase-associated domain KU039_08835 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU039_08840 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KU039_08910 PF00196 Bacterial regulatory proteins, luxR family KU039_08915 PF01425 Amidase KU039_08920 PF13533 Biotin-lipoyl like KU039_08925 PF07690 Major Facilitator Superfamily KU039_08950 PF01975 Survival protein SurE KU039_08960 PF02824 TGS domain KU039_08960 PF04607 Region found in RelA / SpoT proteins KU039_08960 PF13291 ACT domain KU039_09010 PF12146 Serine aminopeptidase, S33 KU039_09015 PF12833 Helix-turn-helix domain KU039_09015 PF02311 AraC-like ligand binding domain KU039_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_09025 PF00512 His Kinase A (phospho-acceptor) domain KU039_09025 PF16527 Two-component sensor protein CpxA, periplasmic domain KU039_09025 PF00672 HAMP domain KU039_09030 PF00072 Response regulator receiver domain KU039_09030 PF00486 Transcriptional regulatory protein, C terminal KU039_09035 PF00529 HlyD membrane-fusion protein of T1SS KU039_09035 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_09040 PF00873 AcrB/AcrD/AcrF family KU039_09045 PF02321 Outer membrane efflux protein KU039_09050 PF12146 Serine aminopeptidase, S33 KU039_09055 PF00743 Flavin-binding monooxygenase-like KU039_09060 PF01593 Flavin containing amine oxidoreductase KU039_09075 PF01266 FAD dependent oxidoreductase KU039_09095 PF16970 Type-1 fimbrial protein, A KU039_09105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU039_09105 PF02753 Pili assembly chaperone PapD, C-terminal domain KU039_09110 PF13953 PapC C-terminal domain KU039_09110 PF13954 PapC N-terminal domain KU039_09110 PF00577 Outer membrane usher protein KU039_09115 PF00419 Fimbrial protein KU039_09125 PF08240 Alcohol dehydrogenase GroES-like domain KU039_09125 PF00107 Zinc-binding dehydrogenase KU039_09135 PF00199 Catalase KU039_09150 PF13091 PLD-like domain KU039_09170 PF01244 Membrane dipeptidase (Peptidase family M19) KU039_09175 PF13186 Iron-sulfur cluster-binding domain KU039_09175 PF04055 Radical SAM superfamily KU039_09180 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KU039_09185 PF03070 TENA/THI-4/PQQC family KU039_09190 PF12706 Beta-lactamase superfamily domain KU039_09195 PF08042 PqqA family KU039_09200 PF02503 Polyphosphate kinase middle domain KU039_09200 PF13090 Polyphosphate kinase C-terminal domain 2 KU039_09200 PF13089 Polyphosphate kinase N-terminal domain KU039_09200 PF17941 Polyphosphate kinase C-terminal domain 1 KU039_09205 PF00149 Calcineurin-like phosphoesterase KU039_09215 PF00550 Phosphopantetheine attachment site KU039_09215 PF00857 Isochorismatase family KU039_09220 PF00106 short chain dehydrogenase KU039_09225 PF00005 ABC transporter KU039_09225 PF03459 TOBE domain KU039_09230 PF00528 Binding-protein-dependent transport system inner membrane component KU039_09240 PF03459 TOBE domain KU039_09240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_09245 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU039_09245 PF00355 Rieske [2Fe-2S] domain KU039_09250 PF00866 Ring hydroxylating beta subunit KU039_09255 PF00175 Oxidoreductase NAD-binding domain KU039_09255 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_09255 PF00970 Oxidoreductase FAD-binding domain KU039_09260 PF12833 Helix-turn-helix domain KU039_09260 PF14525 AraC-binding-like domain KU039_09270 PF01613 Flavin reductase like domain KU039_09285 PF01738 Dienelactone hydrolase family KU039_09290 PF07690 Major Facilitator Superfamily KU039_09295 PF12833 Helix-turn-helix domain KU039_09295 PF06719 AraC-type transcriptional regulator N-terminus KU039_09320 PF03466 LysR substrate binding domain KU039_09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_09325 PF01144 Coenzyme A transferase KU039_09330 PF01144 Coenzyme A transferase KU039_09335 PF02667 Short chain fatty acid transporter KU039_09340 PF00108 Thiolase, N-terminal domain KU039_09340 PF02803 Thiolase, C-terminal domain KU039_09345 PF03466 LysR substrate binding domain KU039_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_09350 PF03466 LysR substrate binding domain KU039_09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_09365 PF00206 Lyase KU039_09365 PF10415 Fumarase C C-terminus KU039_09370 PF00593 TonB dependent receptor KU039_09370 PF07715 TonB-dependent Receptor Plug Domain KU039_09375 PF00083 Sugar (and other) transporter KU039_09390 PF00005 ABC transporter KU039_09395 PF00528 Binding-protein-dependent transport system inner membrane component KU039_09400 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU039_09415 PF07702 UTRA domain KU039_09415 PF00392 Bacterial regulatory proteins, gntR family KU039_09425 PF02525 Flavodoxin-like fold KU039_09430 PF01638 HxlR-like helix-turn-helix KU039_09435 PF06445 GyrI-like small molecule binding domain KU039_09435 PF12833 Helix-turn-helix domain KU039_09450 PF01925 Sulfite exporter TauE/SafE KU039_09455 PF04273 Putative phosphatase (DUF442) KU039_09455 PF00753 Metallo-beta-lactamase superfamily KU039_09460 PF04273 Putative phosphatase (DUF442) KU039_09460 PF00753 Metallo-beta-lactamase superfamily KU039_09465 PF00158 Sigma-54 interaction domain KU039_09465 PF00072 Response regulator receiver domain KU039_09465 PF02954 Bacterial regulatory protein, Fis family KU039_09470 PF01062 Bestrophin, RFP-TM, chloride channel KU039_09475 PF00107 Zinc-binding dehydrogenase KU039_09475 PF08240 Alcohol dehydrogenase GroES-like domain KU039_09480 PF00106 short chain dehydrogenase KU039_09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_09485 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KU039_09490 PF00364 Biotin-requiring enzyme KU039_09490 PF02817 e3 binding domain KU039_09490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KU039_09495 PF02780 Transketolase, C-terminal domain KU039_09495 PF02779 Transketolase, pyrimidine binding domain KU039_09500 PF00676 Dehydrogenase E1 component KU039_09505 PF04055 Radical SAM superfamily KU039_09520 PF00990 Diguanylate cyclase, GGDEF domain KU039_09520 PF08448 PAS fold KU039_09525 PF01264 Chorismate synthase KU039_09530 PF05175 Methyltransferase small domain KU039_09535 PF00291 Pyridoxal-phosphate dependent enzyme KU039_09545 PF00004 ATPase family associated with various cellular activities (AAA) KU039_09545 PF17862 AAA+ lid domain KU039_09545 PF01434 Peptidase family M41 KU039_09555 PF05166 YcgL domain KU039_09575 PF01612 3'-5' exonuclease KU039_09575 PF00570 HRDC domain KU039_09580 PF02132 RecR protein KU039_09580 PF13662 Toprim domain KU039_09585 PF02575 YbaB/EbfC DNA-binding family KU039_09595 PF01053 Cys/Met metabolism PLP-dependent enzyme KU039_09600 PF00561 alpha/beta hydrolase fold KU039_09605 PF08241 Methyltransferase domain KU039_09635 PF01230 HIT domain KU039_09670 PF00005 ABC transporter KU039_09675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_09685 PF02684 Lipid-A-disaccharide synthetase KU039_09690 PF00593 TonB dependent receptor KU039_09690 PF07715 TonB-dependent Receptor Plug Domain KU039_09710 PF01925 Sulfite exporter TauE/SafE KU039_09715 PF00793 DAHP synthetase I family KU039_09720 PF02654 Cobalamin-5-phosphate synthase KU039_09735 PF02277 Phosphoribosyltransferase KU039_09740 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KU039_09750 PF13419 Haloacid dehalogenase-like hydrolase KU039_09775 PF00593 TonB dependent receptor KU039_09775 PF07715 TonB-dependent Receptor Plug Domain KU039_09790 PF04183 IucA / IucC family KU039_09790 PF06276 Ferric iron reductase FhuF-like transporter KU039_09795 PF04183 IucA / IucC family KU039_09795 PF06276 Ferric iron reductase FhuF-like transporter KU039_09800 PF07690 Major Facilitator Superfamily KU039_09805 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KU039_09810 PF06276 Ferric iron reductase FhuF-like transporter KU039_09810 PF04183 IucA / IucC family KU039_09815 PF04073 Aminoacyl-tRNA editing domain KU039_09825 PF03109 ABC1 family KU039_09830 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_09830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_09830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_09835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_09835 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_09835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_09840 PF00487 Fatty acid desaturase KU039_09845 PF12852 Cupin KU039_09845 PF12833 Helix-turn-helix domain KU039_09850 PF00639 PPIC-type PPIASE domain KU039_09850 PF09312 SurA N-terminal domain KU039_09855 PF00216 Bacterial DNA-binding protein KU039_09870 PF02082 Transcriptional regulator KU039_09875 PF00266 Aminotransferase class-V KU039_09880 PF01592 NifU-like N terminal domain KU039_09885 PF01521 Iron-sulphur cluster biosynthesis KU039_09890 PF07743 HSCB C-terminal oligomerisation domain KU039_09890 PF00226 DnaJ domain KU039_09895 PF00012 Hsp70 protein KU039_09900 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_09905 PF00211 Adenylate and Guanylate cyclase catalytic domain KU039_09915 PF03461 TRCF domain KU039_09915 PF00270 DEAD/DEAH box helicase KU039_09915 PF02559 CarD-like/TRCF domain KU039_09915 PF00271 Helicase conserved C-terminal domain KU039_09915 PF17757 UvrB interaction domain KU039_09935 PF03737 Aldolase/RraA KU039_09940 PF13460 NAD(P)H-binding KU039_09945 PF01649 Ribosomal protein S20 KU039_09955 PF00459 Inositol monophosphatase family KU039_09970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU039_09970 PF00005 ABC transporter KU039_09975 PF00528 Binding-protein-dependent transport system inner membrane component KU039_09980 PF00528 Binding-protein-dependent transport system inner membrane component KU039_09985 PF01432 Peptidase family M3 KU039_10005 PF07715 TonB-dependent Receptor Plug Domain KU039_10005 PF00593 TonB dependent receptor KU039_10015 PF01618 MotA/TolQ/ExbB proton channel family KU039_10020 PF02472 Biopolymer transport protein ExbD/TolR KU039_10025 PF02472 Biopolymer transport protein ExbD/TolR KU039_10035 PF01274 Malate synthase KU039_10155 PF10668 Phage terminase small subunit KU039_10155 PF03592 Terminase small subunit KU039_10245 PF02899 Phage integrase, N-terminal SAM-like domain KU039_10245 PF00589 Phage integrase family KU039_10250 PF03969 AFG1-like ATPase KU039_10260 PF00743 Flavin-binding monooxygenase-like KU039_10270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KU039_10280 PF00216 Bacterial DNA-binding protein KU039_10285 PF00575 S1 RNA binding domain KU039_10290 PF02224 Cytidylate kinase KU039_10300 PF14437 MafB19-like deaminase KU039_10310 PF03167 Uracil DNA glycosylase superfamily KU039_10320 PF03934 Type II secretion system (T2SS), protein K KU039_10325 PF11612 Type II secretion system (T2SS), protein J KU039_10325 PF07963 Prokaryotic N-terminal methylation motif KU039_10330 PF02501 Type II secretion system (T2SS), protein I KU039_10330 PF07963 Prokaryotic N-terminal methylation motif KU039_10345 PF01026 TatD related DNase KU039_10355 PF09115 DNA polymerase III, delta subunit, C terminal KU039_10360 PF02348 Cytidylyltransferase KU039_10365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KU039_10370 PF00664 ABC transporter transmembrane region KU039_10370 PF00005 ABC transporter KU039_10380 PF01618 MotA/TolQ/ExbB proton channel family KU039_10385 PF17762 HTH domain found in ParB protein KU039_10385 PF02195 ParB-like nuclease domain KU039_10390 PF13614 AAA domain KU039_10395 PF02527 rRNA small subunit methyltransferase G KU039_10400 PF00483 Nucleotidyl transferase KU039_10405 PF01636 Phosphotransferase enzyme family KU039_10410 PF03968 OstA-like protein KU039_10410 PF04453 LPS transport system D KU039_10415 PF09312 SurA N-terminal domain KU039_10415 PF00639 PPIC-type PPIASE domain KU039_10420 PF01116 Fructose-bisphosphate aldolase class-II KU039_10430 PF00162 Phosphoglycerate kinase KU039_10440 PF02545 Maf-like protein KU039_10445 PF08007 Cupin superfamily protein KU039_10460 PF00375 Sodium:dicarboxylate symporter family KU039_10465 PF06912 Protein of unknown function (DUF1275) KU039_10470 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KU039_10475 PF00005 ABC transporter KU039_10475 PF00664 ABC transporter transmembrane region KU039_10485 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU039_10485 PF12833 Helix-turn-helix domain KU039_10490 PF01597 Glycine cleavage H-protein KU039_10495 PF02146 Sir2 family KU039_10500 PF00474 Sodium:solute symporter family KU039_10505 PF01037 Lrp/AsnC ligand binding domain KU039_10510 PF00171 Aldehyde dehydrogenase family KU039_10510 PF01619 Proline dehydrogenase KU039_10510 PF14850 DNA-binding domain of Proline dehydrogenase KU039_10510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KU039_10515 PF04229 GrpB protein KU039_10520 PF05958 tRNA (Uracil-5-)-methyltransferase KU039_10530 PF09992 Phosphodiester glycosidase KU039_10540 PF04264 YceI-like domain KU039_10550 PF02780 Transketolase, C-terminal domain KU039_10550 PF02779 Transketolase, pyrimidine binding domain KU039_10550 PF00456 Transketolase, thiamine diphosphate binding domain KU039_10555 PF02773 S-adenosylmethionine synthetase, C-terminal domain KU039_10555 PF00438 S-adenosylmethionine synthetase, N-terminal domain KU039_10555 PF02772 S-adenosylmethionine synthetase, central domain KU039_10575 PF00905 Penicillin binding protein transpeptidase domain KU039_10590 PF02075 Crossover junction endodeoxyribonuclease RuvC KU039_10595 PF03853 YjeF-related protein N-terminus KU039_10595 PF01256 Carbohydrate kinase KU039_10600 PF08331 Domain of unknown function (DUF1730) KU039_10605 PF04055 Radical SAM superfamily KU039_10605 PF06968 Biotin and Thiamin Synthesis associated domain KU039_10620 PF16970 Type-1 fimbrial protein, A KU039_10625 PF02753 Pili assembly chaperone PapD, C-terminal domain KU039_10625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KU039_10630 PF13954 PapC N-terminal domain KU039_10630 PF13953 PapC C-terminal domain KU039_10630 PF00577 Outer membrane usher protein KU039_10650 PF00892 EamA-like transporter family KU039_10660 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU039_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_10670 PF03466 LysR substrate binding domain KU039_10690 PF00440 Bacterial regulatory proteins, tetR family KU039_10700 PF01709 Transcriptional regulator KU039_10705 PF01037 Lrp/AsnC ligand binding domain KU039_10720 PF00005 ABC transporter KU039_10725 PF00528 Binding-protein-dependent transport system inner membrane component KU039_10730 PF00528 Binding-protein-dependent transport system inner membrane component KU039_10745 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU039_10745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_10755 PF00296 Luciferase-like monooxygenase KU039_10760 PF03180 NLPA lipoprotein KU039_10780 PF00005 ABC transporter KU039_10780 PF09383 NIL domain KU039_10785 PF00528 Binding-protein-dependent transport system inner membrane component KU039_10790 PF06071 Protein of unknown function (DUF933) KU039_10790 PF01926 50S ribosome-binding GTPase KU039_10815 PF03591 AzlC protein KU039_10820 PF05437 Branched-chain amino acid transport protein (AzlD) KU039_10830 PF02222 ATP-grasp domain KU039_10835 PF01966 HD domain KU039_10835 PF08335 GlnD PII-uridylyltransferase KU039_10835 PF01909 Nucleotidyltransferase domain KU039_10840 PF00155 Aminotransferase class I and II KU039_10850 PF12833 Helix-turn-helix domain KU039_10850 PF12852 Cupin KU039_10855 PF00255 Glutathione peroxidase KU039_10860 PF01641 SelR domain KU039_10865 PF00155 Aminotransferase class I and II KU039_10870 PF00375 Sodium:dicarboxylate symporter family KU039_10875 PF00710 Asparaginase, N-terminal KU039_10875 PF17763 Glutaminase/Asparaginase C-terminal domain KU039_10880 PF02811 PHP domain KU039_10880 PF14579 Helix-hairpin-helix motif KU039_10880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KU039_10880 PF07733 Bacterial DNA polymerase III alpha NTPase domain KU039_10880 PF01336 OB-fold nucleic acid binding domain KU039_10885 PF00588 SpoU rRNA Methylase family KU039_10890 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_10905 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_10905 PF13192 Thioredoxin domain KU039_10920 PF03466 LysR substrate binding domain KU039_10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_10925 PF01758 Sodium Bile acid symporter family KU039_10930 PF01022 Bacterial regulatory protein, arsR family KU039_10935 PF03960 ArsC family KU039_10945 PF01979 Amidohydrolase family KU039_10945 PF13382 Adenine deaminase C-terminal domain KU039_10955 PF03466 LysR substrate binding domain KU039_10955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_10965 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU039_10970 PF01177 Asp/Glu/Hydantoin racemase KU039_10975 PF02668 Taurine catabolism dioxygenase TauD, TfdA family KU039_10980 PF00528 Binding-protein-dependent transport system inner membrane component KU039_10985 PF00005 ABC transporter KU039_10990 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KU039_11000 PF00083 Sugar (and other) transporter KU039_11005 PF00296 Luciferase-like monooxygenase KU039_11010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_11010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU039_11010 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_11020 PF01654 Cytochrome bd terminal oxidase subunit I KU039_11025 PF02322 Cytochrome bd terminal oxidase subunit II KU039_11035 PF00392 Bacterial regulatory proteins, gntR family KU039_11035 PF00155 Aminotransferase class I and II KU039_11040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11040 PF03466 LysR substrate binding domain KU039_11055 PF00698 Acyl transferase domain KU039_11060 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KU039_11070 PF01039 Carboxyl transferase domain KU039_11075 PF06857 Malonate decarboxylase delta subunit (MdcD) KU039_11080 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KU039_11085 PF16957 Malonate decarboxylase, alpha subunit, transporter KU039_11090 PF07690 Major Facilitator Superfamily KU039_11105 PF00392 Bacterial regulatory proteins, gntR family KU039_11105 PF00155 Aminotransferase class I and II KU039_11110 PF04172 LrgB-like family KU039_11115 PF03788 LrgA family KU039_11120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11120 PF03466 LysR substrate binding domain KU039_11125 PF14834 Glutathione S-transferase, C-terminal domain KU039_11125 PF02798 Glutathione S-transferase, N-terminal domain KU039_11130 PF02798 Glutathione S-transferase, N-terminal domain KU039_11135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11135 PF03466 LysR substrate binding domain KU039_11145 PF00581 Rhodanese-like domain KU039_11150 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_11160 PF00266 Aminotransferase class-V KU039_11170 PF01810 LysE type translocator KU039_11175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11175 PF03466 LysR substrate binding domain KU039_11185 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU039_11190 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU039_11195 PF00005 ABC transporter KU039_11200 PF00528 Binding-protein-dependent transport system inner membrane component KU039_11205 PF00528 Binding-protein-dependent transport system inner membrane component KU039_11220 PF00072 Response regulator receiver domain KU039_11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_11225 PF00512 His Kinase A (phospho-acceptor) domain KU039_11225 PF09308 LuxQ, periplasmic KU039_11225 PF00072 Response regulator receiver domain KU039_11235 PF01037 Lrp/AsnC ligand binding domain KU039_11235 PF13404 AsnC-type helix-turn-helix domain KU039_11245 PF00717 Peptidase S24-like KU039_11270 PF00199 Catalase KU039_11270 PF06628 Catalase-related immune-responsive KU039_11270 PF18011 C-terminal domain found in long catalases KU039_11280 PF00994 Probable molybdopterin binding domain KU039_11280 PF02464 Competence-damaged protein KU039_11280 PF18146 Damage-inducible protein CinA KH domain KU039_11315 PF03466 LysR substrate binding domain KU039_11315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11335 PF00501 AMP-binding enzyme KU039_11335 PF13193 AMP-binding enzyme C-terminal domain KU039_11340 PF00440 Bacterial regulatory proteins, tetR family KU039_11345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_11345 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_11345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_11350 PF01039 Carboxyl transferase domain KU039_11355 PF00378 Enoyl-CoA hydratase/isomerase KU039_11360 PF02785 Biotin carboxylase C-terminal domain KU039_11360 PF00289 Biotin carboxylase, N-terminal domain KU039_11360 PF00364 Biotin-requiring enzyme KU039_11360 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU039_11360 PF18140 Propionyl-coenzyme A carboxylase BT domain KU039_11365 PF00682 HMGL-like KU039_11370 PF03466 LysR substrate binding domain KU039_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11385 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_11385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_11385 PF12806 Acetyl-CoA dehydrogenase C-terminal like KU039_11385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_11395 PF07690 Major Facilitator Superfamily KU039_11405 PF01144 Coenzyme A transferase KU039_11410 PF01144 Coenzyme A transferase KU039_11415 PF07690 Major Facilitator Superfamily KU039_11420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_11420 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_11420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_11425 PF00378 Enoyl-CoA hydratase/isomerase KU039_11435 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU039_11435 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU039_11435 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU039_11440 PF02803 Thiolase, C-terminal domain KU039_11440 PF00108 Thiolase, N-terminal domain KU039_11445 PF09339 IclR helix-turn-helix domain KU039_11450 PF07690 Major Facilitator Superfamily KU039_11455 PF03060 Nitronate monooxygenase KU039_11460 PF00378 Enoyl-CoA hydratase/isomerase KU039_11465 PF09339 IclR helix-turn-helix domain KU039_11470 PF02515 CoA-transferase family III KU039_11475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_11475 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_11475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_11480 PF07690 Major Facilitator Superfamily KU039_11485 PF13419 Haloacid dehalogenase-like hydrolase KU039_11490 PF00266 Aminotransferase class-V KU039_11495 PF01266 FAD dependent oxidoreductase KU039_11500 PF00528 Binding-protein-dependent transport system inner membrane component KU039_11505 PF00005 ABC transporter KU039_11505 PF08402 TOBE domain KU039_11515 PF07702 UTRA domain KU039_11515 PF00392 Bacterial regulatory proteins, gntR family KU039_11520 PF01494 FAD binding domain KU039_11525 PF01614 Bacterial transcriptional regulator KU039_11525 PF09339 IclR helix-turn-helix domain KU039_11530 PF02525 Flavodoxin-like fold KU039_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11535 PF03466 LysR substrate binding domain KU039_11540 PF02627 Carboxymuconolactone decarboxylase family KU039_11545 PF00171 Aldehyde dehydrogenase family KU039_11555 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KU039_11565 PF00171 Aldehyde dehydrogenase family KU039_11570 PF00296 Luciferase-like monooxygenase KU039_11575 PF01613 Flavin reductase like domain KU039_11580 PF12697 Alpha/beta hydrolase family KU039_11600 PF01292 Prokaryotic cytochrome b561 KU039_11605 PF00199 Catalase KU039_11640 PF03061 Thioesterase superfamily KU039_11645 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_11650 PF08223 PaaX-like protein C-terminal domain KU039_11650 PF07848 PaaX-like protein KU039_11655 PF00501 AMP-binding enzyme KU039_11655 PF14535 AMP-binding enzyme C-terminal domain KU039_11660 PF00108 Thiolase, N-terminal domain KU039_11660 PF02803 Thiolase, C-terminal domain KU039_11665 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KU039_11665 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU039_11665 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU039_11670 PF00378 Enoyl-CoA hydratase/isomerase KU039_11675 PF00378 Enoyl-CoA hydratase/isomerase KU039_11680 PF00970 Oxidoreductase FAD-binding domain KU039_11680 PF00175 Oxidoreductase NAD-binding domain KU039_11680 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_11685 PF01883 Iron-sulfur cluster assembly protein KU039_11690 PF05138 Phenylacetic acid catabolic protein KU039_11695 PF06243 Phenylacetic acid degradation B KU039_11700 PF05138 Phenylacetic acid catabolic protein KU039_11705 PF00171 Aldehyde dehydrogenase family KU039_11705 PF01575 MaoC like domain KU039_11710 PF03313 Serine dehydratase alpha chain KU039_11710 PF03315 Serine dehydratase beta chain KU039_11715 PF13520 Amino acid permease KU039_11720 PF00171 Aldehyde dehydrogenase family KU039_11725 PF00083 Sugar (and other) transporter KU039_11735 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_11735 PF04324 BFD-like [2Fe-2S] binding domain KU039_11745 PF01266 FAD dependent oxidoreductase KU039_11750 PF05544 Proline racemase KU039_11755 PF00392 Bacterial regulatory proteins, gntR family KU039_11765 PF00701 Dihydrodipicolinate synthetase family KU039_11775 PF00376 MerR family regulatory protein KU039_11775 PF09278 MerR, DNA binding KU039_11790 PF02677 Epoxyqueuosine reductase QueH KU039_11805 PF07690 Major Facilitator Superfamily KU039_11810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU039_11820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_11820 PF03466 LysR substrate binding domain KU039_11840 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KU039_11845 PF06812 ImpA, N-terminal, type VI secretion system KU039_11850 PF00004 ATPase family associated with various cellular activities (AAA) KU039_11850 PF07724 AAA domain (Cdc48 subfamily) KU039_11850 PF10431 C-terminal, D2-small domain, of ClpB protein KU039_11850 PF17871 AAA lid domain KU039_11860 PF00691 OmpA family KU039_11860 PF01389 OmpA-like transmembrane domain KU039_11870 PF06744 Type VI secretion protein IcmF C-terminal KU039_11870 PF06761 Intracellular multiplication and human macrophage-killing KU039_11870 PF14331 ImcF-related N-terminal domain KU039_11885 PF05947 Type VI secretion system, TssF KU039_11900 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KU039_11925 PF00005 ABC transporter KU039_11930 PF00497 Bacterial extracellular solute-binding proteins, family 3 KU039_11935 PF01425 Amidase KU039_11940 PF08753 NikR C terminal nickel binding domain KU039_11940 PF01402 Ribbon-helix-helix protein, copG family KU039_11960 PF02525 Flavodoxin-like fold KU039_11965 PF00289 Biotin carboxylase, N-terminal domain KU039_11965 PF02785 Biotin carboxylase C-terminal domain KU039_11965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU039_11980 PF00107 Zinc-binding dehydrogenase KU039_11980 PF08240 Alcohol dehydrogenase GroES-like domain KU039_11980 PF13823 Alcohol dehydrogenase GroES-associated KU039_11990 PF00440 Bacterial regulatory proteins, tetR family KU039_12010 PF00654 Voltage gated chloride channel KU039_12015 PF02785 Biotin carboxylase C-terminal domain KU039_12015 PF00289 Biotin carboxylase, N-terminal domain KU039_12015 PF00364 Biotin-requiring enzyme KU039_12015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KU039_12025 PF07286 Protein of unknown function (DUF1445) KU039_12030 PF03746 LamB/YcsF family KU039_12035 PF01566 Natural resistance-associated macrophage protein KU039_12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_12040 PF03466 LysR substrate binding domain KU039_12055 PF05593 RHS Repeat KU039_12055 PF03527 RHS protein KU039_12060 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU039_12060 PF04717 Type VI secretion system, phage-baseplate injector KU039_12060 PF13296 Putative type VI secretion system Rhs element Vgr KU039_12070 PF13419 Haloacid dehalogenase-like hydrolase KU039_12090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU039_12090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU039_12110 PF07690 Major Facilitator Superfamily KU039_12120 PF03279 Bacterial lipid A biosynthesis acyltransferase KU039_12125 PF00563 EAL domain KU039_12125 PF00990 Diguanylate cyclase, GGDEF domain KU039_12125 PF03707 Bacterial signalling protein N terminal repeat KU039_12130 PF00892 EamA-like transporter family KU039_12135 PF01037 Lrp/AsnC ligand binding domain KU039_12140 PF05192 MutS domain III KU039_12140 PF01624 MutS domain I KU039_12140 PF05188 MutS domain II KU039_12140 PF00488 MutS domain V KU039_12140 PF05190 MutS family domain IV KU039_12150 PF11953 Domain of unknown function (DUF3470) KU039_12150 PF00037 4Fe-4S binding domain KU039_12160 PF01596 O-methyltransferase KU039_12170 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_12175 PF01205 Uncharacterized protein family UPF0029 KU039_12185 PF03412 Peptidase C39 family KU039_12185 PF00005 ABC transporter KU039_12185 PF00664 ABC transporter transmembrane region KU039_12190 PF02321 Outer membrane efflux protein KU039_12195 PF12399 Branched-chain amino acid ATP-binding cassette transporter KU039_12195 PF00005 ABC transporter KU039_12200 PF03968 OstA-like protein KU039_12215 PF00571 CBS domain KU039_12215 PF01380 SIS domain KU039_12220 PF01406 tRNA synthetases class I (C) catalytic domain KU039_12220 PF09190 DALR domain KU039_12255 PF01638 HxlR-like helix-turn-helix KU039_12260 PF07690 Major Facilitator Superfamily KU039_12285 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU039_12285 PF03807 NADP oxidoreductase coenzyme F420-dependent KU039_12295 PF00313 'Cold-shock' DNA-binding domain KU039_12300 PF01810 LysE type translocator KU039_12330 PF02601 Exonuclease VII, large subunit KU039_12330 PF13742 OB-fold nucleic acid binding domain KU039_12365 PF09278 MerR, DNA binding KU039_12365 PF00376 MerR family regulatory protein KU039_12370 PF00403 Heavy-metal-associated domain KU039_12375 PF00403 Heavy-metal-associated domain KU039_12380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_12380 PF03466 LysR substrate binding domain KU039_12385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU039_12385 PF00355 Rieske [2Fe-2S] domain KU039_12390 PF00866 Ring hydroxylating beta subunit KU039_12395 PF00175 Oxidoreductase NAD-binding domain KU039_12395 PF00970 Oxidoreductase FAD-binding domain KU039_12395 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_12400 PF00106 short chain dehydrogenase KU039_12405 PF03594 Benzoate membrane transport protein KU039_12410 PF07690 Major Facilitator Superfamily KU039_12420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KU039_12420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KU039_12425 PF00270 DEAD/DEAH box helicase KU039_12425 PF11898 Domain of unknown function (DUF3418) KU039_12425 PF04408 Helicase associated domain (HA2) KU039_12425 PF00271 Helicase conserved C-terminal domain KU039_12425 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KU039_12430 PF10417 C-terminal domain of 1-Cys peroxiredoxin KU039_12430 PF00578 AhpC/TSA family KU039_12450 PF13192 Thioredoxin domain KU039_12450 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_12460 PF02798 Glutathione S-transferase, N-terminal domain KU039_12460 PF00043 Glutathione S-transferase, C-terminal domain KU039_12470 PF02390 Putative methyltransferase KU039_12475 PF13417 Glutathione S-transferase, N-terminal domain KU039_12475 PF00043 Glutathione S-transferase, C-terminal domain KU039_12485 PF13488 Glycine zipper KU039_12485 PF00691 OmpA family KU039_12490 PF01979 Amidohydrolase family KU039_12495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KU039_12495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KU039_12505 PF10672 S-adenosylmethionine-dependent methyltransferase KU039_12505 PF02926 THUMP domain KU039_12505 PF01170 Putative RNA methylase family UPF0020 KU039_12520 PF00004 ATPase family associated with various cellular activities (AAA) KU039_12520 PF07724 AAA domain (Cdc48 subfamily) KU039_12520 PF17871 AAA lid domain KU039_12520 PF10431 C-terminal, D2-small domain, of ClpB protein KU039_12520 PF02861 Clp amino terminal domain, pathogenicity island component KU039_12535 PF02566 OsmC-like protein KU039_12545 PF13545 Crp-like helix-turn-helix domain KU039_12545 PF00027 Cyclic nucleotide-binding domain KU039_12555 PF00248 Aldo/keto reductase family KU039_12570 PF00709 Adenylosuccinate synthetase KU039_12575 PF13393 Histidyl-tRNA synthetase KU039_12580 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KU039_12580 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KU039_12585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU039_12585 PF01411 tRNA synthetases class II (A) KU039_12585 PF02272 DHHA1 domain KU039_12590 PF01842 ACT domain KU039_12590 PF00696 Amino acid kinase family KU039_12590 PF13840 ACT domain KU039_12595 PF02599 Global regulator protein family KU039_12600 PF01351 Ribonuclease HII KU039_12610 PF01292 Prokaryotic cytochrome b561 KU039_12615 PF00962 Adenosine/AMP deaminase KU039_12620 PF00860 Permease family KU039_12630 PF00743 Flavin-binding monooxygenase-like KU039_12635 PF00106 short chain dehydrogenase KU039_12645 PF17954 Quercetinase C-terminal cupin domain KU039_12645 PF02678 Pirin KU039_12655 PF13610 DDE domain KU039_12660 PF00171 Aldehyde dehydrogenase family KU039_12670 PF07729 FCD domain KU039_12670 PF00392 Bacterial regulatory proteins, gntR family KU039_12680 PF00324 Amino acid permease KU039_12685 PF01266 FAD dependent oxidoreductase KU039_12690 PF00324 Amino acid permease KU039_12730 PF03527 RHS protein KU039_12730 PF05593 RHS Repeat KU039_12735 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KU039_12735 PF04717 Type VI secretion system, phage-baseplate injector KU039_12735 PF13296 Putative type VI secretion system Rhs element Vgr KU039_12755 PF03180 NLPA lipoprotein KU039_12760 PF05987 Bacterial protein of unknown function (DUF898) KU039_12775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU039_12775 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_12780 PF00764 Arginosuccinate synthase KU039_12785 PF00563 EAL domain KU039_12785 PF01590 GAF domain KU039_12785 PF00990 Diguanylate cyclase, GGDEF domain KU039_12785 PF00360 Phytochrome region KU039_12790 PF01979 Amidohydrolase family KU039_12795 PF00929 Exonuclease KU039_12805 PF00593 TonB dependent receptor KU039_12805 PF07715 TonB-dependent Receptor Plug Domain KU039_12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_12810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KU039_12815 PF00005 ABC transporter KU039_12815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KU039_12820 PF00528 Binding-protein-dependent transport system inner membrane component KU039_12820 PF12911 N-terminal TM domain of oligopeptide transport permease C KU039_12825 PF00528 Binding-protein-dependent transport system inner membrane component KU039_12830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KU039_12835 PF01464 Transglycosylase SLT domain KU039_12835 PF01476 LysM domain KU039_12835 PF01464 Transglycosylase SLT domain KU039_12835 PF01476 LysM domain KU039_12840 PF00929 Exonuclease KU039_12850 PF00293 NUDIX domain KU039_12850 PF09297 NADH pyrophosphatase zinc ribbon domain KU039_12860 PF04972 BON domain KU039_12865 PF02021 Uncharacterised protein family UPF0102 KU039_12870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KU039_12880 PF03466 LysR substrate binding domain KU039_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_12885 PF01810 LysE type translocator KU039_12895 PF13411 MerR HTH family regulatory protein KU039_12905 PF01494 FAD binding domain KU039_12910 PF01494 FAD binding domain KU039_12915 PF05195 Aminopeptidase P, N-terminal domain KU039_12915 PF00557 Metallopeptidase family M24 KU039_12955 PF00884 Sulfatase KU039_12955 PF08019 Phosphoethanolamine transferase EptA/EptB KU039_13000 PF01476 LysM domain KU039_13000 PF08525 Opacity-associated protein A N-terminal motif KU039_13000 PF01551 Peptidase family M23 KU039_13325 PF01812 5-formyltetrahydrofolate cyclo-ligase family KU039_13330 PF04355 SmpA / OmlA family KU039_13330 PF00691 OmpA family KU039_13335 PF13018 Extended Signal Peptide of Type V secretion system KU039_13335 PF03895 YadA-like membrane anchor domain KU039_13335 PF05658 Head domain of trimeric autotransporter adhesin KU039_13335 PF05662 Coiled stalk of trimeric autotransporter adhesin KU039_13340 PF02190 ATP-dependent protease La (LON) substrate-binding domain KU039_13340 PF05362 Lon protease (S16) C-terminal proteolytic domain KU039_13340 PF00004 ATPase family associated with various cellular activities (AAA) KU039_13345 PF02590 Predicted SPOUT methyltransferase KU039_13350 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KU039_13360 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KU039_13360 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KU039_13365 PF04060 Putative Fe-S cluster KU039_13370 PF00633 Helix-hairpin-helix motif KU039_13370 PF10576 Iron-sulfur binding domain of endonuclease III KU039_13370 PF00730 HhH-GPD superfamily base excision DNA repair protein KU039_13380 PF05191 Adenylate kinase, active site lid KU039_13395 PF03717 Penicillin-binding Protein dimerisation domain KU039_13395 PF00905 Penicillin binding protein transpeptidase domain KU039_13410 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU039_13415 PF01730 UreF KU039_13420 PF02814 UreE urease accessory protein, N-terminal domain KU039_13420 PF05194 UreE urease accessory protein, C-terminal domain KU039_13430 PF00547 Urease, gamma subunit KU039_13435 PF01774 UreD urease accessory protein KU039_13450 PF00463 Isocitrate lyase family KU039_13455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_13455 PF03466 LysR substrate binding domain KU039_13460 PF01595 Cyclin M transmembrane N-terminal domain KU039_13460 PF03471 Transporter associated domain KU039_13460 PF00571 CBS domain KU039_13465 PF03600 Citrate transporter KU039_13480 PF00009 Elongation factor Tu GTP binding domain KU039_13485 PF01507 Phosphoadenosine phosphosulfate reductase family KU039_13495 PF14052 Capsule assembly protein Wzi KU039_13500 PF00152 tRNA synthetases class II (D, K and N) KU039_13500 PF01336 OB-fold nucleic acid binding domain KU039_13515 PF00301 Rubredoxin KU039_13520 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_13520 PF18113 Rubredoxin binding C-terminal domain KU039_13525 PF00561 alpha/beta hydrolase fold KU039_13530 PF03466 LysR substrate binding domain KU039_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_13540 PF02503 Polyphosphate kinase middle domain KU039_13540 PF13090 Polyphosphate kinase C-terminal domain 2 KU039_13540 PF17941 Polyphosphate kinase C-terminal domain 1 KU039_13540 PF13089 Polyphosphate kinase N-terminal domain KU039_13545 PF00912 Transglycosylase KU039_13550 PF01694 Rhomboid family KU039_13560 PF00005 ABC transporter KU039_13565 PF13472 GDSL-like Lipase/Acylhydrolase family KU039_13570 PF00484 Carbonic anhydrase KU039_13575 PF00561 alpha/beta hydrolase fold KU039_13585 PF07715 TonB-dependent Receptor Plug Domain KU039_13585 PF00593 TonB dependent receptor KU039_13590 PF01521 Iron-sulphur cluster biosynthesis KU039_13590 PF01106 NifU-like domain KU039_13600 PF00884 Sulfatase KU039_13605 PF03781 Sulfatase-modifying factor enzyme 1 KU039_13620 PF00291 Pyridoxal-phosphate dependent enzyme KU039_13625 PF01384 Phosphate transporter family KU039_13630 PF02310 B12 binding domain KU039_13630 PF02607 B12 binding domain KU039_13630 PF02965 Vitamin B12 dependent methionine synthase, activation domain KU039_13630 PF00809 Pterin binding enzyme KU039_13630 PF02574 Homocysteine S-methyltransferase KU039_13635 PF02779 Transketolase, pyrimidine binding domain KU039_13635 PF02780 Transketolase, C-terminal domain KU039_13640 PF00456 Transketolase, thiamine diphosphate binding domain KU039_13645 PF07690 Major Facilitator Superfamily KU039_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_13655 PF03466 LysR substrate binding domain KU039_13665 PF01263 Aldose 1-epimerase KU039_13670 PF07690 Major Facilitator Superfamily KU039_13675 PF12833 Helix-turn-helix domain KU039_13675 PF02311 AraC-like ligand binding domain KU039_13680 PF04960 Glutaminase KU039_13685 PF01327 Polypeptide deformylase KU039_13690 PF07690 Major Facilitator Superfamily KU039_13700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU039_13700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU039_13700 PF00205 Thiamine pyrophosphate enzyme, central domain KU039_13705 PF00171 Aldehyde dehydrogenase family KU039_13710 PF01958 Domain of unknown function DUF108 KU039_13710 PF03447 Homoserine dehydrogenase, NAD binding domain KU039_13720 PF12697 Alpha/beta hydrolase family KU039_13730 PF07690 Major Facilitator Superfamily KU039_13735 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_13735 PF14759 Reductase C-terminal KU039_13740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KU039_13750 PF00355 Rieske [2Fe-2S] domain KU039_13760 PF00355 Rieske [2Fe-2S] domain KU039_13765 PF09339 IclR helix-turn-helix domain KU039_13765 PF01614 Bacterial transcriptional regulator KU039_13780 PF00378 Enoyl-CoA hydratase/isomerase KU039_13790 PF00535 Glycosyl transferase family 2 KU039_13795 PF01522 Polysaccharide deacetylase KU039_13795 PF14883 Hypothetical glycosyl hydrolase family 13 KU039_13800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU039_13805 PF07152 YaeQ protein KU039_13810 PF00375 Sodium:dicarboxylate symporter family KU039_13815 PF02492 CobW/HypB/UreG, nucleotide-binding domain KU039_13815 PF07683 Cobalamin synthesis protein cobW C-terminal domain KU039_13825 PF03061 Thioesterase superfamily KU039_13835 PF02028 BCCT, betaine/carnitine/choline family transporter KU039_13840 PF02028 BCCT, betaine/carnitine/choline family transporter KU039_13845 PF00440 Bacterial regulatory proteins, tetR family KU039_13845 PF13977 BetI-type transcriptional repressor, C-terminal KU039_13850 PF00171 Aldehyde dehydrogenase family KU039_13855 PF00732 GMC oxidoreductase KU039_13855 PF05199 GMC oxidoreductase KU039_13860 PF06039 Malate:quinone oxidoreductase (Mqo) KU039_13870 PF02574 Homocysteine S-methyltransferase KU039_13875 PF13520 Amino acid permease KU039_13900 PF01126 Heme oxygenase KU039_13910 PF04575 Protein of unknown function (DUF560) KU039_13920 PF07715 TonB-dependent Receptor Plug Domain KU039_13920 PF00593 TonB dependent receptor KU039_13930 PF04542 Sigma-70 region 2 KU039_13930 PF08281 Sigma-70, region 4 KU039_13940 PF00701 Dihydrodipicolinate synthetase family KU039_13945 PF00083 Sugar (and other) transporter KU039_13965 PF01026 TatD related DNase KU039_13980 PF07693 KAP family P-loop domain KU039_14000 PF00436 Single-strand binding protein family KU039_14055 PF13356 Arm DNA-binding domain KU039_14055 PF00589 Phage integrase family KU039_14095 PF10544 T5orf172 domain KU039_14100 PF13614 AAA domain KU039_14120 PF00905 Penicillin binding protein transpeptidase domain KU039_14195 PF00712 DNA polymerase III beta subunit, N-terminal domain KU039_14195 PF02768 DNA polymerase III beta subunit, C-terminal domain KU039_14195 PF02767 DNA polymerase III beta subunit, central domain KU039_14235 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KU039_14395 PF07007 Lysozyme inhibitor LprI KU039_14440 PF01695 IstB-like ATP binding protein KU039_14450 PF00145 C-5 cytosine-specific DNA methylase KU039_14495 PF01381 Helix-turn-helix KU039_14495 PF00717 Peptidase S24-like KU039_14530 PF00929 Exonuclease KU039_14605 PF07690 Major Facilitator Superfamily KU039_14610 PF13533 Biotin-lipoyl like KU039_14615 PF03061 Thioesterase superfamily KU039_14620 PF00490 Delta-aminolevulinic acid dehydratase KU039_14625 PF01266 FAD dependent oxidoreductase KU039_14630 PF01370 NAD dependent epimerase/dehydratase family KU039_14630 PF08338 Domain of unknown function (DUF1731) KU039_14650 PF00149 Calcineurin-like phosphoesterase KU039_14650 PF12320 Type 5 capsule protein repressor C-terminal domain KU039_14660 PF01168 Alanine racemase, N-terminal domain KU039_14665 PF00437 Type II/IV secretion system protein KU039_14670 PF00437 Type II/IV secretion system protein KU039_14675 PF01475 Ferric uptake regulator family KU039_14680 PF04355 SmpA / OmlA family KU039_14685 PF03658 RnfH family Ubiquitin KU039_14695 PF01814 Hemerythrin HHE cation binding domain KU039_14700 PF13230 Glutamine amidotransferases class-II KU039_14710 PF00696 Amino acid kinase family KU039_14715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU039_14715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU039_14715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU039_14715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU039_14720 PF00692 dUTPase KU039_14725 PF13361 UvrD-like helicase C-terminal domain KU039_14725 PF00580 UvrD/REP helicase N-terminal domain KU039_14730 PF00691 OmpA family KU039_14730 PF13488 Glycine zipper KU039_14735 PF01553 Acyltransferase KU039_14745 PF03775 Septum formation inhibitor MinC, C-terminal domain KU039_14750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KU039_14755 PF03776 Septum formation topological specificity factor MinE KU039_14770 PF01810 LysE type translocator KU039_14775 PF17854 FtsK alpha domain KU039_14775 PF09397 Ftsk gamma domain KU039_14775 PF01580 FtsK/SpoIIIE family KU039_14775 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KU039_14780 PF07992 Pyridine nucleotide-disulphide oxidoreductase KU039_14785 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KU039_14790 PF04376 Arginine-tRNA-protein transferase, N terminus KU039_14790 PF04377 Arginine-tRNA-protein transferase, C terminus KU039_14795 PF00583 Acetyltransferase (GNAT) family KU039_14810 PF00009 Elongation factor Tu GTP binding domain KU039_14810 PF03144 Elongation factor Tu domain 2 KU039_14810 PF03143 Elongation factor Tu C-terminal domain KU039_14815 PF00679 Elongation factor G C-terminus KU039_14815 PF14492 Elongation Factor G, domain II KU039_14815 PF03764 Elongation factor G, domain IV KU039_14815 PF03144 Elongation factor Tu domain 2 KU039_14815 PF00009 Elongation factor Tu GTP binding domain KU039_14820 PF00177 Ribosomal protein S7p/S5e KU039_14825 PF00164 Ribosomal protein S12/S23 KU039_14835 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_14835 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_14840 PF03653 Uncharacterised protein family (UPF0093) KU039_14845 PF02678 Pirin KU039_14845 PF05726 Pirin C-terminal cupin domain KU039_14855 PF02540 NAD synthase KU039_14855 PF00795 Carbon-nitrogen hydrolase KU039_14870 PF00111 2Fe-2S iron-sulfur cluster binding domain KU039_14870 PF00175 Oxidoreductase NAD-binding domain KU039_14870 PF00970 Oxidoreductase FAD-binding domain KU039_14875 PF00171 Aldehyde dehydrogenase family KU039_14880 PF00355 Rieske [2Fe-2S] domain KU039_14880 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KU039_14885 PF07859 alpha/beta hydrolase fold KU039_14890 PF02028 BCCT, betaine/carnitine/choline family transporter KU039_14895 PF00180 Isocitrate/isopropylmalate dehydrogenase KU039_14900 PF03466 LysR substrate binding domain KU039_14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_14920 PF00037 4Fe-4S binding domain KU039_14925 PF01467 Cytidylyltransferase-like KU039_14930 PF01668 SmpB protein KU039_14935 PF03358 NADPH-dependent FMN reductase KU039_14940 PF02578 Multi-copper polyphenol oxidoreductase laccase KU039_14945 PF01479 S4 domain KU039_14945 PF00849 RNA pseudouridylate synthase KU039_14950 PF13525 Outer membrane lipoprotein KU039_14955 PF01807 CHC2 zinc finger KU039_14955 PF10410 DnaB-helicase binding domain of primase KU039_14955 PF08275 DNA primase catalytic core, N-terminal domain KU039_14955 PF08278 DNA primase DnaG DnaB-binding KU039_14960 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KU039_14960 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KU039_14960 PF01488 Shikimate / quinate 5-dehydrogenase KU039_14970 PF03550 Outer membrane lipoprotein LolB KU039_14975 PF08544 GHMP kinases C terminal KU039_14975 PF00288 GHMP kinases N terminal domain KU039_15000 PF14572 Phosphoribosyl synthetase-associated domain KU039_15000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KU039_15005 PF01386 Ribosomal L25p family KU039_15010 PF01195 Peptidyl-tRNA hydrolase KU039_15015 PF02261 Aspartate decarboxylase KU039_15030 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KU039_15040 PF03070 TENA/THI-4/PQQC family KU039_15040 PF02581 Thiamine monophosphate synthase KU039_15040 PF08543 Phosphomethylpyrimidine kinase KU039_15045 PF04972 BON domain KU039_15045 PF01476 LysM domain KU039_15050 PF00550 Phosphopantetheine attachment site KU039_15060 PF00698 Acyl transferase domain KU039_15065 PF01783 Ribosomal L32p protein family KU039_15070 PF02620 Large ribosomal RNA subunit accumulation protein YceD KU039_15075 PF04315 Elongation factor P hydroxylase KU039_15080 PF01300 Telomere recombination KU039_15085 PF02616 Segregation and condensation protein ScpA KU039_15090 PF04079 Segregation and condensation complex subunit ScpB KU039_15095 PF00849 RNA pseudouridylate synthase KU039_15095 PF01479 S4 domain KU039_15110 PF00155 Aminotransferase class I and II KU039_15115 PF06968 Biotin and Thiamin Synthesis associated domain KU039_15115 PF04055 Radical SAM superfamily KU039_15115 PF00202 Aminotransferase class-III KU039_15120 PF08241 Methyltransferase domain KU039_15120 PF12697 Alpha/beta hydrolase family KU039_15125 PF02358 Trehalose-phosphatase KU039_15130 PF00982 Glycosyltransferase family 20 KU039_15135 PF07690 Major Facilitator Superfamily KU039_15140 PF00210 Ferritin-like domain KU039_15145 PF00533 BRCA1 C Terminus (BRCT) domain KU039_15145 PF01653 NAD-dependent DNA ligase adenylation domain KU039_15145 PF03120 NAD-dependent DNA ligase OB-fold domain KU039_15145 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KU039_15145 PF12826 Helix-hairpin-helix motif KU039_15155 PF06470 SMC proteins Flexible Hinge Domain KU039_15155 PF02463 RecF/RecN/SMC N terminal domain KU039_15165 PF01925 Sulfite exporter TauE/SafE KU039_15175 PF03309 Type III pantothenate kinase KU039_15180 PF00448 SRP54-type protein, GTPase domain KU039_15180 PF02881 SRP54-type protein, helical bundle domain KU039_15180 PF02978 Signal peptide binding domain KU039_15190 PF01207 Dihydrouridine synthase (Dus) KU039_15220 PF00692 dUTPase KU039_15235 PF01048 Phosphorylase superfamily KU039_15240 PF10609 NUBPL iron-transfer P-loop NTPase KU039_15250 PF09334 tRNA synthetases class I (M) KU039_15250 PF01588 Putative tRNA binding domain KU039_15275 PF13533 Biotin-lipoyl like KU039_15280 PF00291 Pyridoxal-phosphate dependent enzyme KU039_15295 PF05552 Conserved TM helix KU039_15310 PF00175 Oxidoreductase NAD-binding domain KU039_15310 PF00970 Oxidoreductase FAD-binding domain KU039_15315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_15315 PF03466 LysR substrate binding domain KU039_15320 PF00313 'Cold-shock' DNA-binding domain KU039_15330 PF00361 Proton-conducting membrane transporter KU039_15335 PF00361 Proton-conducting membrane transporter KU039_15340 PF00361 Proton-conducting membrane transporter KU039_15340 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU039_15345 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU039_15350 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KU039_15355 PF12838 4Fe-4S dicluster domain KU039_15360 PF00146 NADH dehydrogenase KU039_15365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KU039_15365 PF00384 Molybdopterin oxidoreductase KU039_15365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KU039_15370 PF10531 SLBB domain KU039_15370 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KU039_15370 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KU039_15380 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KU039_15380 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KU039_15385 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KU039_15390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KU039_15395 PF00990 Diguanylate cyclase, GGDEF domain KU039_15395 PF17151 Periplasmic sensor domain KU039_15405 PF00672 HAMP domain KU039_15405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_15405 PF00512 His Kinase A (phospho-acceptor) domain KU039_15410 PF00072 Response regulator receiver domain KU039_15410 PF00486 Transcriptional regulatory protein, C terminal KU039_15420 PF03477 ATP cone domain KU039_15420 PF00317 Ribonucleotide reductase, all-alpha domain KU039_15420 PF02867 Ribonucleotide reductase, barrel domain KU039_15430 PF00268 Ribonucleotide reductase, small chain KU039_15440 PF13755 Sensor N-terminal transmembrane domain KU039_15440 PF00512 His Kinase A (phospho-acceptor) domain KU039_15440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_15440 PF00672 HAMP domain KU039_15440 PF13756 Stimulus-sensing domain KU039_15510 PF13360 PQQ-like domain KU039_15510 PF01011 PQQ enzyme repeat KU039_15535 PF02567 Phenazine biosynthesis-like protein KU039_15555 PF01613 Flavin reductase like domain KU039_15560 PF01717 Cobalamin-independent synthase, Catalytic domain KU039_15560 PF08267 Cobalamin-independent synthase, N-terminal domain KU039_15570 PF03466 LysR substrate binding domain KU039_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_15575 PF01810 LysE type translocator KU039_15585 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KU039_15585 PF12833 Helix-turn-helix domain KU039_15590 PF07687 Peptidase dimerisation domain KU039_15590 PF01546 Peptidase family M20/M25/M40 KU039_15600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_15600 PF03466 LysR substrate binding domain KU039_15605 PF07690 Major Facilitator Superfamily KU039_15615 PF03466 LysR substrate binding domain KU039_15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_15620 PF00890 FAD binding domain KU039_15620 PF14537 Cytochrome c3 KU039_15630 PF02515 CoA-transferase family III KU039_15635 PF07690 Major Facilitator Superfamily KU039_15640 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_15640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_15640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_15645 PF03466 LysR substrate binding domain KU039_15645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_15650 PF00107 Zinc-binding dehydrogenase KU039_15650 PF08240 Alcohol dehydrogenase GroES-like domain KU039_15655 PF00962 Adenosine/AMP deaminase KU039_15680 PF02445 Quinolinate synthetase A protein KU039_15685 PF01960 ArgJ family KU039_15690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU039_15690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU039_15695 PF00893 Small Multidrug Resistance protein KU039_15705 PF05275 Copper resistance protein B precursor (CopB) KU039_15710 PF00394 Multicopper oxidase KU039_15710 PF07731 Multicopper oxidase KU039_15710 PF07732 Multicopper oxidase KU039_15725 PF00834 Ribulose-phosphate 3 epimerase family KU039_15735 PF00756 Putative esterase KU039_15745 PF04445 Putative SAM-dependent methyltransferase KU039_15750 PF00814 Glycoprotease family KU039_15755 PF00132 Bacterial transferase hexapeptide (six repeats) KU039_15760 PF00293 NUDIX domain KU039_15800 PF04715 Anthranilate synthase component I, N terminal region KU039_15800 PF00425 chorismate binding enzyme KU039_15805 PF00155 Aminotransferase class I and II KU039_15810 PF00815 Histidinol dehydrogenase KU039_15815 PF01634 ATP phosphoribosyltransferase KU039_15820 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KU039_15825 PF01722 BolA-like protein KU039_15830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KU039_15835 PF04552 Sigma-54, DNA binding domain KU039_15835 PF04963 Sigma-54 factor, core binding domain KU039_15835 PF00309 Sigma-54 factor, Activator interacting domain (AID) KU039_15880 PF00795 Carbon-nitrogen hydrolase KU039_15890 PF01047 MarR family KU039_15895 PF02566 OsmC-like protein KU039_15900 PF00437 Type II/IV secretion system protein KU039_15920 PF01612 3'-5' exonuclease KU039_15920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KU039_15920 PF01367 5'-3' exonuclease, C-terminal SAM fold KU039_15920 PF00476 DNA polymerase family A KU039_15925 PF02325 YGGT family KU039_15930 PF14748 Pyrroline-5-carboxylate reductase dimerisation KU039_15930 PF03807 NADP oxidoreductase coenzyme F420-dependent KU039_15935 PF01171 PP-loop family KU039_15935 PF09179 TilS substrate binding domain KU039_15935 PF11734 TilS substrate C-terminal domain KU039_15940 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KU039_15945 PF02541 Ppx/GppA phosphatase family KU039_15950 PF00085 Thioredoxin KU039_15955 PF07498 Rho termination factor, N-terminal domain KU039_15955 PF07497 Rho termination factor, RNA-binding domain KU039_15955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU039_15970 PF00216 Bacterial DNA-binding protein KU039_15975 PF03483 B3/4 domain KU039_15975 PF03484 tRNA synthetase B5 domain KU039_15975 PF03147 Ferredoxin-fold anticodon binding domain KU039_15975 PF01588 Putative tRNA binding domain KU039_15975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KU039_15980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KU039_15980 PF01409 tRNA synthetases class II core domain (F) KU039_16000 PF00453 Ribosomal protein L20 KU039_16005 PF01632 Ribosomal protein L35 KU039_16010 PF07690 Major Facilitator Superfamily KU039_16015 PF09335 SNARE associated Golgi protein KU039_16020 PF02798 Glutathione S-transferase, N-terminal domain KU039_16020 PF00043 Glutathione S-transferase, C-terminal domain KU039_16025 PF00707 Translation initiation factor IF-3, C-terminal domain KU039_16025 PF05198 Translation initiation factor IF-3, N-terminal domain KU039_16030 PF03129 Anticodon binding domain KU039_16030 PF02824 TGS domain KU039_16030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KU039_16030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KU039_16035 PF00501 AMP-binding enzyme KU039_16035 PF13193 AMP-binding enzyme C-terminal domain KU039_16040 PF04751 Protein of unknown function (DUF615) KU039_16045 PF00381 PTS HPr component phosphorylation site KU039_16050 PF03668 P-loop ATPase protein family KU039_16055 PF02569 Pantoate-beta-alanine ligase KU039_16060 PF02548 Ketopantoate hydroxymethyltransferase KU039_16065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KU039_16070 PF01743 Poly A polymerase head domain KU039_16070 PF12626 Polymerase A arginine-rich C-terminus KU039_16070 PF12627 Probable RNA and SrmB- binding site of polymerase A KU039_16080 PF03819 MazG nucleotide pyrophosphohydrolase domain KU039_16090 PF13291 ACT domain KU039_16090 PF04607 Region found in RelA / SpoT proteins KU039_16090 PF02824 TGS domain KU039_16095 PF05958 tRNA (Uracil-5-)-methyltransferase KU039_16105 PF00291 Pyridoxal-phosphate dependent enzyme KU039_16110 PF00672 HAMP domain KU039_16110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_16110 PF00512 His Kinase A (phospho-acceptor) domain KU039_16110 PF01627 Hpt domain KU039_16110 PF00072 Response regulator receiver domain KU039_16110 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KU039_16115 PF00378 Enoyl-CoA hydratase/isomerase KU039_16120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU039_16120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU039_16125 PF01261 Xylose isomerase-like TIM barrel KU039_16135 PF00106 short chain dehydrogenase KU039_16140 PF02233 NAD(P) transhydrogenase beta subunit KU039_16145 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KU039_16150 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KU039_16150 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KU039_16155 PF00892 EamA-like transporter family KU039_16165 PF07690 Major Facilitator Superfamily KU039_16170 PF01207 Dihydrouridine synthase (Dus) KU039_16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_16180 PF03466 LysR substrate binding domain KU039_16190 PF00899 ThiF family KU039_16200 PF00694 Aconitase C-terminal domain KU039_16200 PF00330 Aconitase family (aconitate hydratase) KU039_16205 PF01026 TatD related DNase KU039_16220 PF16658 Class II release factor RF3, C-terminal domain KU039_16220 PF03144 Elongation factor Tu domain 2 KU039_16220 PF00009 Elongation factor Tu GTP binding domain KU039_16240 PF00563 EAL domain KU039_16240 PF03707 Bacterial signalling protein N terminal repeat KU039_16240 PF00990 Diguanylate cyclase, GGDEF domain KU039_16245 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KU039_16245 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KU039_16250 PF10369 Small subunit of acetolactate synthase KU039_16255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KU039_16255 PF00205 Thiamine pyrophosphate enzyme, central domain KU039_16255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KU039_16265 PF13603 Leucyl-tRNA synthetase, Domain 2 KU039_16265 PF09334 tRNA synthetases class I (M) KU039_16265 PF08264 Anticodon-binding domain of tRNA KU039_16265 PF00133 tRNA synthetases class I (I, L, M and V) KU039_16280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KU039_16285 PF00005 ABC transporter KU039_16285 PF12704 MacB-like periplasmic core domain KU039_16285 PF02687 FtsX-like permease family KU039_16290 PF02321 Outer membrane efflux protein KU039_16305 PF00929 Exonuclease KU039_16310 PF03193 RsgA GTPase KU039_16320 PF00462 Glutaredoxin KU039_16325 PF02556 Preprotein translocase subunit SecB KU039_16340 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_16340 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_16355 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_16355 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_16365 PF04820 Tryptophan halogenase KU039_16385 PF00221 Aromatic amino acid lyase KU039_16400 PF13193 AMP-binding enzyme C-terminal domain KU039_16400 PF00501 AMP-binding enzyme KU039_16410 PF00550 Phosphopantetheine attachment site KU039_16415 PF00550 Phosphopantetheine attachment site KU039_16430 PF01926 50S ribosome-binding GTPase KU039_16430 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KU039_16435 PF13360 PQQ-like domain KU039_16445 PF03129 Anticodon binding domain KU039_16445 PF13393 Histidyl-tRNA synthetase KU039_16450 PF04551 GcpE protein KU039_16455 PF13464 Domain of unknown function (DUF4115) KU039_16465 PF04055 Radical SAM superfamily KU039_16470 PF00334 Nucleoside diphosphate kinase KU039_16475 PF04384 Iron-sulphur cluster assembly KU039_16480 PF01569 PAP2 superfamily KU039_16485 PF00534 Glycosyl transferases group 1 KU039_16485 PF13439 Glycosyltransferase Family 4 KU039_16490 PF11818 C-terminal domain of tail specific protease (DUF3340) KU039_16490 PF00595 PDZ domain KU039_16490 PF17804 Tail specific protease N-terminal domain KU039_16490 PF03572 Peptidase family S41 KU039_16495 PF00933 Glycosyl hydrolase family 3 N terminal domain KU039_16505 PF00561 alpha/beta hydrolase fold KU039_16510 PF00171 Aldehyde dehydrogenase family KU039_16515 PF00171 Aldehyde dehydrogenase family KU039_16520 PF01202 Shikimate kinase KU039_16525 PF02447 GntP family permease KU039_16530 PF01081 KDPG and KHG aldolase KU039_16535 PF00920 Dehydratase family KU039_16540 PF00871 Acetokinase family KU039_16545 PF07085 DRTGG domain KU039_16545 PF01515 Phosphate acetyl/butaryl transferase KU039_16550 PF05681 Fumarate hydratase (Fumerase) KU039_16550 PF05683 Fumarase C-terminus KU039_16565 PF07724 AAA domain (Cdc48 subfamily) KU039_16565 PF10431 C-terminal, D2-small domain, of ClpB protein KU039_16565 PF06689 ClpX C4-type zinc finger KU039_16570 PF00574 Clp protease KU039_16575 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU039_16575 PF05698 Bacterial trigger factor protein (TF) C-terminus KU039_16575 PF05697 Bacterial trigger factor protein (TF) KU039_16580 PF07715 TonB-dependent Receptor Plug Domain KU039_16580 PF00593 TonB dependent receptor KU039_16585 PF13640 2OG-Fe(II) oxygenase superfamily KU039_16585 PF18331 PKHD-type hydroxylase C-terminal domain KU039_16590 PF00682 HMGL-like KU039_16590 PF08502 LeuA allosteric (dimerisation) domain KU039_16595 PF00561 alpha/beta hydrolase fold KU039_16600 PF07021 Methionine biosynthesis protein MetW KU039_16600 PF00561 alpha/beta hydrolase fold KU039_16610 PF01725 Ham1 family KU039_16620 PF02416 mttA/Hcf106 family KU039_16625 PF02416 mttA/Hcf106 family KU039_16630 PF00902 Sec-independent protein translocase protein (TatC) KU039_16650 PF01790 Prolipoprotein diacylglyceryl transferase KU039_16665 PF00303 Thymidylate synthase KU039_16670 PF00186 Dihydrofolate reductase KU039_16680 PF01625 Peptide methionine sulfoxide reductase KU039_16690 PF01618 MotA/TolQ/ExbB proton channel family KU039_16700 PF01842 ACT domain KU039_16700 PF00551 Formyl transferase KU039_16710 PF00171 Aldehyde dehydrogenase family KU039_16715 PF00830 Ribosomal L28 family KU039_16720 PF00471 Ribosomal protein L33 KU039_16725 PF02254 TrkA-N domain KU039_16725 PF00999 Sodium/hydrogen exchanger family KU039_16745 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KU039_16750 PF13361 UvrD-like helicase C-terminal domain KU039_16750 PF00580 UvrD/REP helicase N-terminal domain KU039_16765 PF01396 Topoisomerase DNA binding C4 zinc finger KU039_16765 PF08272 Topoisomerase I zinc-ribbon-like KU039_16765 PF01131 DNA topoisomerase KU039_16765 PF01751 Toprim domain KU039_16775 PF01638 HxlR-like helix-turn-helix KU039_16780 PF08240 Alcohol dehydrogenase GroES-like domain KU039_16780 PF00107 Zinc-binding dehydrogenase KU039_16785 PF04102 SlyX KU039_16790 PF12848 ABC transporter KU039_16790 PF16326 ABC transporter C-terminal domain KU039_16790 PF00005 ABC transporter KU039_16795 PF01810 LysE type translocator KU039_16800 PF03279 Bacterial lipid A biosynthesis acyltransferase KU039_16810 PF00375 Sodium:dicarboxylate symporter family KU039_16820 PF01118 Semialdehyde dehydrogenase, NAD binding domain KU039_16820 PF02774 Semialdehyde dehydrogenase, dimerisation domain KU039_16840 PF01416 tRNA pseudouridine synthase KU039_16850 PF01176 Translation initiation factor 1A / IF-1 KU039_16865 PF00180 Isocitrate/isopropylmalate dehydrogenase KU039_16875 PF00694 Aconitase C-terminal domain KU039_16880 PF00330 Aconitase family (aconitate hydratase) KU039_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_16890 PF03466 LysR substrate binding domain KU039_16910 PF00293 NUDIX domain KU039_16915 PF01590 GAF domain KU039_16915 PF00391 PEP-utilising enzyme, mobile domain KU039_16915 PF02896 PEP-utilising enzyme, TIM barrel domain KU039_16915 PF05524 PEP-utilising enzyme, N-terminal KU039_16920 PF00141 Peroxidase KU039_16925 PF12706 Beta-lactamase superfamily domain KU039_16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_16930 PF03466 LysR substrate binding domain KU039_16940 PF02798 Glutathione S-transferase, N-terminal domain KU039_16945 PF08279 HTH domain KU039_16945 PF13280 WYL domain KU039_16950 PF13419 Haloacid dehalogenase-like hydrolase KU039_16955 PF00849 RNA pseudouridylate synthase KU039_16955 PF01479 S4 domain KU039_16960 PF00575 S1 RNA binding domain KU039_16960 PF12111 Polyribonucleotide phosphorylase C terminal KU039_16960 PF10150 Ribonuclease E/G family KU039_16965 PF00501 AMP-binding enzyme KU039_16965 PF13193 AMP-binding enzyme C-terminal domain KU039_16980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KU039_16980 PF03466 LysR substrate binding domain KU039_16985 PF00106 short chain dehydrogenase KU039_16990 PF06969 HemN C-terminal domain KU039_16990 PF04055 Radical SAM superfamily KU039_17000 PF01554 MatE KU039_17005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_17005 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU039_17005 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_17010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KU039_17010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_17015 PF03109 ABC1 family KU039_17020 PF01197 Ribosomal protein L31 KU039_17035 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KU039_17055 PF03884 DNA gyrase inhibitor YacG KU039_17060 PF00753 Metallo-beta-lactamase superfamily KU039_17065 PF00762 Ferrochelatase KU039_17075 PF01177 Asp/Glu/Hydantoin racemase KU039_17090 PF01206 Sulfurtransferase TusA KU039_17095 PF00571 CBS domain KU039_17095 PF03471 Transporter associated domain KU039_17100 PF00795 Carbon-nitrogen hydrolase KU039_17105 PF01588 Putative tRNA binding domain KU039_17115 PF07963 Prokaryotic N-terminal methylation motif KU039_17115 PF08334 Type II secretion system (T2SS), protein G KU039_17120 PF00482 Type II secretion system (T2SS), protein F KU039_17125 PF00270 DEAD/DEAH box helicase KU039_17125 PF00271 Helicase conserved C-terminal domain KU039_17125 PF17764 3′ DNA-binding domain (3′BD) KU039_17125 PF18074 Primosomal protein N C-terminal domain KU039_17125 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KU039_17130 PF00999 Sodium/hydrogen exchanger family KU039_17130 PF02254 TrkA-N domain KU039_17135 PF01430 Hsp33 protein KU039_17145 PF00226 DnaJ domain KU039_17145 PF01556 DnaJ C terminal domain KU039_17155 PF01544 CorA-like Mg2+ transporter protein KU039_17160 PF01138 3' exoribonuclease family, domain 1 KU039_17160 PF03725 3' exoribonuclease family, domain 2 KU039_17160 PF00575 S1 RNA binding domain KU039_17160 PF00013 KH domain KU039_17160 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KU039_17165 PF00312 Ribosomal protein S15 KU039_17170 PF00144 Beta-lactamase KU039_17175 PF13538 UvrD-like helicase C-terminal domain KU039_17180 PF13361 UvrD-like helicase C-terminal domain KU039_17180 PF12705 PD-(D/E)XK nuclease superfamily KU039_17180 PF00580 UvrD/REP helicase N-terminal domain KU039_17185 PF17946 RecC C-terminal domain KU039_17195 PF03976 Polyphosphate kinase 2 (PPK2) KU039_17205 PF01209 ubiE/COQ5 methyltransferase family KU039_17215 PF03109 ABC1 family KU039_17220 PF01494 FAD binding domain KU039_17225 PF01502 Phosphoribosyl-AMP cyclohydrolase KU039_17240 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KU039_17240 PF13244 Domain of unknown function (DUF4040) KU039_17240 PF00361 Proton-conducting membrane transporter KU039_17240 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KU039_17245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KU039_17250 PF00361 Proton-conducting membrane transporter KU039_17255 PF01899 Na+/H+ ion antiporter subunit KU039_17260 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KU039_17265 PF03334 Na+/H+ antiporter subunit KU039_17270 PF02033 Ribosome-binding factor A KU039_17275 PF00009 Elongation factor Tu GTP binding domain KU039_17275 PF11987 Translation-initiation factor 2 KU039_17275 PF08364 Bacterial translation initiation factor IF-2 associated region KU039_17275 PF04760 Translation initiation factor IF-2, N-terminal region KU039_17280 PF13184 NusA-like KH domain KU039_17280 PF08529 NusA N-terminal domain KU039_17280 PF00575 S1 RNA binding domain KU039_17285 PF02576 RimP N-terminal domain KU039_17285 PF17384 RimP C-terminal SH3 domain KU039_17305 PF03840 Preprotein translocase SecG subunit KU039_17310 PF00121 Triosephosphate isomerase KU039_17315 PF00437 Type II/IV secretion system protein KU039_17315 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KU039_17320 PF00482 Type II secretion system (T2SS), protein F KU039_17325 PF01478 Type IV leader peptidase family KU039_17325 PF06750 Bacterial Peptidase A24 N-terminal domain KU039_17330 PF01121 Dephospho-CoA kinase KU039_17340 PF00588 SpoU rRNA Methylase family KU039_17340 PF08032 RNA 2'-O ribose methyltransferase substrate binding KU039_17345 PF06865 Pyrimidine/purine nucleoside phosphorylase KU039_17355 PF02463 RecF/RecN/SMC N terminal domain KU039_17360 PF02622 Uncharacterized ACR, COG1678 KU039_17365 PF03652 Holliday junction resolvase KU039_17370 PF13533 Biotin-lipoyl like KU039_17395 PF12833 Helix-turn-helix domain KU039_17395 PF02805 Metal binding domain of Ada KU039_17395 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KU039_17395 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KU039_17400 PF01066 CDP-alcohol phosphatidyltransferase KU039_17410 PF08459 UvrC Helix-hairpin-helix N-terminal KU039_17410 PF02151 UvrB/uvrC motif KU039_17410 PF01541 GIY-YIG catalytic domain KU039_17430 PF00378 Enoyl-CoA hydratase/isomerase KU039_17430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KU039_17430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KU039_17435 PF00108 Thiolase, N-terminal domain KU039_17435 PF02803 Thiolase, C-terminal domain KU039_17455 PF00376 MerR family regulatory protein KU039_17455 PF09278 MerR, DNA binding KU039_17465 PF01323 DSBA-like thioredoxin domain KU039_17480 PF00183 Hsp90 protein KU039_17480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_17495 PF03553 Na+/H+ antiporter family KU039_17495 PF13726 Na+-H+ antiporter family KU039_17500 PF00561 alpha/beta hydrolase fold KU039_17520 PF04998 RNA polymerase Rpb1, domain 5 KU039_17520 PF05000 RNA polymerase Rpb1, domain 4 KU039_17520 PF04983 RNA polymerase Rpb1, domain 3 KU039_17520 PF00623 RNA polymerase Rpb1, domain 2 KU039_17520 PF04997 RNA polymerase Rpb1, domain 1 KU039_17525 PF04560 RNA polymerase Rpb2, domain 7 KU039_17525 PF00562 RNA polymerase Rpb2, domain 6 KU039_17525 PF10385 RNA polymerase beta subunit external 1 domain KU039_17525 PF04565 RNA polymerase Rpb2, domain 3 KU039_17525 PF04561 RNA polymerase Rpb2, domain 2 KU039_17525 PF04563 RNA polymerase beta subunit KU039_17530 PF16320 Ribosomal protein L7/L12 dimerisation domain KU039_17530 PF00542 Ribosomal protein L7/L12 C-terminal domain KU039_17535 PF00466 Ribosomal protein L10 KU039_17540 PF00687 Ribosomal protein L1p/L10e family KU039_17545 PF03946 Ribosomal protein L11, N-terminal domain KU039_17545 PF00298 Ribosomal protein L11, RNA binding domain KU039_17550 PF00467 KOW motif KU039_17550 PF02357 Transcription termination factor nusG KU039_17555 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KU039_17565 PF03144 Elongation factor Tu domain 2 KU039_17565 PF03143 Elongation factor Tu C-terminal domain KU039_17565 PF00009 Elongation factor Tu GTP binding domain KU039_17590 PF00425 chorismate binding enzyme KU039_17590 PF04715 Anthranilate synthase component I, N terminal region KU039_17595 PF13419 Haloacid dehalogenase-like hydrolase KU039_17600 PF00498 FHA domain KU039_17600 PF12401 Protein of unknown function (DUF2662) KU039_17605 PF03958 Bacterial type II/III secretion system short domain KU039_17605 PF00263 Bacterial type II and III secretion system protein KU039_17620 PF00816 H-NS histone family KU039_17645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KU039_17645 PF03900 Porphobilinogen deaminase, C-terminal domain KU039_17650 PF00072 Response regulator receiver domain KU039_17650 PF04397 LytTr DNA-binding domain KU039_17655 PF06580 Histidine kinase KU039_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_17655 PF07694 5TMR of 5TMR-LYT KU039_17660 PF14698 Argininosuccinate lyase C-terminal KU039_17660 PF00206 Lyase KU039_17665 PF04362 Bacterial Fe(2+) trafficking KU039_17670 PF01895 PhoU domain KU039_17675 PF02321 Outer membrane efflux protein KU039_17680 PF00892 EamA-like transporter family KU039_17695 PF13667 ThiC-associated domain KU039_17695 PF01964 Radical SAM ThiC family KU039_17700 PF00293 NUDIX domain KU039_17705 PF00149 Calcineurin-like phosphoesterase KU039_17710 PF01258 Prokaryotic dksA/traR C4-type zinc finger KU039_17715 PF00749 tRNA synthetases class I (E and Q), catalytic domain KU039_17720 PF01098 Cell cycle protein KU039_17725 PF02875 Mur ligase family, glutamate ligase domain KU039_17725 PF08245 Mur ligase middle domain KU039_17735 PF07670 Nucleoside recognition KU039_17735 PF07664 Ferrous iron transport protein B C terminus KU039_17735 PF02421 Ferrous iron transport protein B KU039_17745 PF02899 Phage integrase, N-terminal SAM-like domain KU039_17745 PF00589 Phage integrase family KU039_17750 PF10411 Disulfide bond isomerase protein N-terminus KU039_17750 PF13098 Thioredoxin-like domain KU039_17755 PF01842 ACT domain KU039_17755 PF00742 Homoserine dehydrogenase KU039_17755 PF03447 Homoserine dehydrogenase, NAD binding domain KU039_17760 PF00291 Pyridoxal-phosphate dependent enzyme KU039_17765 PF00768 D-alanyl-D-alanine carboxypeptidase KU039_17770 PF00072 Response regulator receiver domain KU039_17770 PF00196 Bacterial regulatory proteins, luxR family KU039_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KU039_17775 PF00512 His Kinase A (phospho-acceptor) domain KU039_17780 PF02954 Bacterial regulatory protein, Fis family KU039_17780 PF00072 Response regulator receiver domain KU039_17780 PF00158 Sigma-54 interaction domain KU039_17785 PF03572 Peptidase family S41 KU039_17785 PF00595 PDZ domain KU039_17790 PF01676 Metalloenzyme superfamily KU039_17790 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KU039_17795 PF03739 Lipopolysaccharide export system permease LptF/LptG KU039_17805 PF00883 Cytosol aminopeptidase family, catalytic domain KU039_17805 PF02789 Cytosol aminopeptidase family, N-terminal domain KU039_17825 PF00677 Lumazine binding domain KU039_17835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KU039_17835 PF01872 RibD C-terminal domain KU039_17840 PF03477 ATP cone domain KU039_17845 PF00909 Ammonium Transporter Family KU039_17850 PF00543 Nitrogen regulatory protein P-II KU039_17860 PF01078 Magnesium chelatase, subunit ChlI KU039_17860 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU039_17870 PF01636 Phosphotransferase enzyme family KU039_17875 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KU039_17895 PF02909 Tetracyclin repressor-like, C-terminal domain KU039_17895 PF00440 Bacterial regulatory proteins, tetR family KU039_17900 PF07690 Major Facilitator Superfamily KU039_17910 PF00916 Sulfate permease family KU039_17910 PF01740 STAS domain KU039_17915 PF00582 Universal stress protein family KU039_17935 PF00665 Integrase core domain KU039_17945 PF01078 Magnesium chelatase, subunit ChlI KU039_17945 PF13335 Magnesium chelatase, subunit ChlI C-terminal KU039_17950 PF00155 Aminotransferase class I and II KU039_17950 PF00392 Bacterial regulatory proteins, gntR family KU039_17960 PF00701 Dihydrodipicolinate synthetase family KU039_17970 PF03573 outer membrane porin, OprD family KU039_17975 PF00719 Inorganic pyrophosphatase KU039_17990 PF13193 AMP-binding enzyme C-terminal domain KU039_17990 PF00501 AMP-binding enzyme KU039_17995 PF00521 DNA gyrase/topoisomerase IV, subunit A KU039_17995 PF03989 DNA gyrase C-terminal domain, beta-propeller KU039_18000 PF07690 Major Facilitator Superfamily KU039_18005 PF03458 UPF0126 domain KU039_18010 PF02810 SEC-C motif KU039_18015 PF03741 Integral membrane protein TerC family KU039_18015 PF03471 Transporter associated domain KU039_18020 PF03641 Possible lysine decarboxylase KU039_18025 PF07690 Major Facilitator Superfamily KU039_18035 PF00817 impB/mucB/samB family KU039_18035 PF11799 impB/mucB/samB family C-terminal domain KU039_18035 PF11798 IMS family HHH motif KU039_18050 PF08497 Radical SAM N-terminal KU039_18050 PF04055 Radical SAM superfamily KU039_18050 PF11842 Domain of unknown function (DUF3362) KU039_18070 PF03358 NADPH-dependent FMN reductase KU039_18080 PF00291 Pyridoxal-phosphate dependent enzyme KU039_18115 PF00440 Bacterial regulatory proteins, tetR family KU039_18140 PF01327 Polypeptide deformylase KU039_18150 PF17782 DprA winged helix domain KU039_18150 PF02481 DNA recombination-mediator protein A KU039_18155 PF01300 Telomere recombination KU039_18160 PF00892 EamA-like transporter family KU039_18165 PF00440 Bacterial regulatory proteins, tetR family KU039_18170 PF07690 Major Facilitator Superfamily KU039_18180 PF00255 Glutathione peroxidase KU039_18190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KU039_18195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU039_18195 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU039_18200 PF00231 ATP synthase KU039_18205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KU039_18205 PF00306 ATP synthase alpha/beta chain, C terminal domain KU039_18205 PF02874 ATP synthase alpha/beta family, beta-barrel domain KU039_18210 PF00213 ATP synthase delta (OSCP) subunit KU039_18215 PF00430 ATP synthase B/B' CF(0) KU039_18220 PF00137 ATP synthase subunit C KU039_18225 PF00119 ATP synthase A chain KU039_18245 PF00005 ABC transporter KU039_18250 PF00950 ABC 3 transport family KU039_18255 PF01810 LysE type translocator KU039_18260 PF04261 Dyp-type peroxidase family KU039_18270 PF03949 Malic enzyme, NAD binding domain KU039_18270 PF00390 Malic enzyme, N-terminal domain KU039_18275 PF03485 Arginyl tRNA synthetase N terminal domain KU039_18275 PF05746 DALR anticodon binding domain KU039_18275 PF00750 tRNA synthetases class I (R) KU039_18295 PF02678 Pirin KU039_18295 PF05726 Pirin C-terminal cupin domain KU039_18305 PF03551 Transcriptional regulator PadR-like family KU039_18310 PF13427 Domain of unknown function (DUF4111) KU039_18310 PF01909 Nucleotidyltransferase domain KU039_18315 PF00117 Glutamine amidotransferase class-I KU039_18315 PF00958 GMP synthase C terminal domain KU039_18315 PF02540 NAD synthase KU039_18320 PF04286 Protein of unknown function (DUF445) KU039_18325 PF07681 DoxX KU039_18330 PF09335 SNARE associated Golgi protein KU039_18345 PF13614 AAA domain KU039_18355 PF01722 BolA-like protein KU039_18370 PF01648 4'-phosphopantetheinyl transferase superfamily KU039_18375 PF12697 Alpha/beta hydrolase family KU039_18395 PF16197 Ketoacyl-synthetase C-terminal extension KU039_18395 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_18395 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_18395 PF08242 Methyltransferase domain KU039_18395 PF14765 Polyketide synthase dehydratase KU039_18395 PF00975 Thioesterase domain KU039_18395 PF00550 Phosphopantetheine attachment site KU039_18400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_18400 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_18400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_18405 PF00501 AMP-binding enzyme KU039_18410 PF03472 Autoinducer binding domain KU039_18410 PF00196 Bacterial regulatory proteins, luxR family KU039_18420 PF00765 Autoinducer synthase KU039_18425 PF00083 Sugar (and other) transporter KU039_18425 PF07690 Major Facilitator Superfamily KU039_18430 PF00378 Enoyl-CoA hydratase/isomerase KU039_18435 PF00378 Enoyl-CoA hydratase/isomerase KU039_18440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KU039_18440 PF02770 Acyl-CoA dehydrogenase, middle domain KU039_18440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KU039_18445 PF13193 AMP-binding enzyme C-terminal domain KU039_18445 PF00501 AMP-binding enzyme KU039_18450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KU039_18450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KU039_18455 PF00171 Aldehyde dehydrogenase family KU039_18465 PF00324 Amino acid permease KU039_18470 PF00324 Amino acid permease KU039_18475 PF01042 Endoribonuclease L-PSP KU039_18480 PF01168 Alanine racemase, N-terminal domain KU039_18480 PF00842 Alanine racemase, C-terminal domain KU039_18485 PF01266 FAD dependent oxidoreductase KU039_18490 PF01037 Lrp/AsnC ligand binding domain KU039_18500 PF07715 TonB-dependent Receptor Plug Domain KU039_18500 PF00593 TonB dependent receptor KU039_18515 PF00849 RNA pseudouridylate synthase KU039_18530 PF00440 Bacterial regulatory proteins, tetR family KU039_18530 PF08361 MAATS-type transcriptional repressor, C-terminal region KU039_18540 PF00109 Beta-ketoacyl synthase, N-terminal domain KU039_18540 PF02801 Beta-ketoacyl synthase, C-terminal domain KU039_18575 PF00694 Aconitase C-terminal domain KU039_18575 PF00330 Aconitase family (aconitate hydratase) KU039_18580 PF00285 Citrate synthase, C-terminal domain KU039_18590 PF00392 Bacterial regulatory proteins, gntR family KU039_18590 PF07729 FCD domain KU039_18600 PF00155 Aminotransferase class I and II KU039_18605 PF09330 D-lactate dehydrogenase, membrane binding KU039_18605 PF01565 FAD binding domain KU039_18610 PF01070 FMN-dependent dehydrogenase KU039_18615 PF00392 Bacterial regulatory proteins, gntR family KU039_18615 PF07729 FCD domain KU039_18620 PF02652 L-lactate permease KU039_18625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KU039_18625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KU039_18625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KU039_18625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KU039_18630 PF16363 GDP-mannose 4,6 dehydratase KU039_18635 PF00342 Phosphoglucose isomerase KU039_18640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU039_18640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU039_18640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU039_18645 PF00483 Nucleotidyl transferase KU039_18650 PF02397 Bacterial sugar transferase KU039_18655 PF00535 Glycosyl transferase family 2 KU039_18685 PF03102 NeuB family KU039_18685 PF08666 SAF domain KU039_18700 PF02348 Cytidylyltransferase KU039_18705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KU039_18710 PF02719 Polysaccharide biosynthesis protein KU039_18715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KU039_18715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KU039_18715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KU039_18720 PF02563 Polysaccharide biosynthesis/export protein KU039_18720 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KU039_18720 PF10531 SLBB domain KU039_18725 PF01451 Low molecular weight phosphotyrosine protein phosphatase KU039_18730 PF13614 AAA domain KU039_18730 PF02706 Chain length determinant protein KU039_18730 PF13807 G-rich domain on putative tyrosine kinase KU039_18735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU039_18735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU039_18740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU039_18740 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KU039_18745 PF03023 Lipid II flippase MurJ KU039_18750 PF01510 N-acetylmuramoyl-L-alanine amidase KU039_18755 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KU039_18755 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KU039_18770 PF03725 3' exoribonuclease family, domain 2 KU039_18770 PF01138 3' exoribonuclease family, domain 1 KU039_18775 PF00487 Fatty acid desaturase KU039_18780 PF00175 Oxidoreductase NAD-binding domain KU039_18785 PF00440 Bacterial regulatory proteins, tetR family KU039_18790 PF00440 Bacterial regulatory proteins, tetR family KU039_18790 PF08360 QacR-like protein, C-terminal region KU039_18795 PF01323 DSBA-like thioredoxin domain KU039_18805 PF13419 Haloacid dehalogenase-like hydrolase KU039_18810 PF00106 short chain dehydrogenase KU039_18825 PF00583 Acetyltransferase (GNAT) family KU039_18825 PF00696 Amino acid kinase family KU039_18830 PF09084 NMT1/THI5 like KU039_18835 PF09084 NMT1/THI5 like KU039_18840 PF00296 Luciferase-like monooxygenase KU039_18845 PF00528 Binding-protein-dependent transport system inner membrane component KU039_18850 PF00005 ABC transporter KU039_18855 PF08362 YcdC-like protein, C-terminal region KU039_18855 PF00440 Bacterial regulatory proteins, tetR family KU039_18860 PF01048 Phosphorylase superfamily KU039_18870 PF01687 Riboflavin kinase KU039_18870 PF06574 FAD synthetase KU039_18875 PF06827 Zinc finger found in FPG and IleRS KU039_18875 PF00133 tRNA synthetases class I (I, L, M and V) KU039_18875 PF08264 Anticodon-binding domain of tRNA KU039_18880 PF01252 Signal peptidase (SPase) II KU039_18885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KU039_18925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KU039_18930 PF07859 alpha/beta hydrolase fold KU039_18955 PF01025 GrpE KU039_18960 PF00012 Hsp70 protein KU039_18980 PF13406 Transglycosylase SLT domain KU039_18985 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KU039_18985 PF02222 ATP-grasp domain KU039_18990 PF00731 AIR carboxylase KU039_19000 PF08245 Mur ligase middle domain KU039_19000 PF02875 Mur ligase family, glutamate ligase domain KU039_19000 PF01225 Mur ligase family, catalytic domain KU039_19010 PF01569 PAP2 superfamily KU039_19015 PF03741 Integral membrane protein TerC family KU039_19025 PF03738 Glutathionylspermidine synthase preATP-grasp KU039_19030 PF00355 Rieske [2Fe-2S] domain KU039_19035 PF01979 Amidohydrolase family KU039_19040 PF00156 Phosphoribosyl transferase domain KU039_19050 PF13098 Thioredoxin-like domain KU039_19050 PF10411 Disulfide bond isomerase protein N-terminus KU039_19055 PF16916 Dimerisation domain of Zinc Transporter KU039_19055 PF01545 Cation efflux family KU039_19060 PF02583 Metal-sensitive transcriptional repressor KU039_19065 PF12631 MnmE helical domain KU039_19065 PF01926 50S ribosome-binding GTPase KU039_19065 PF10396 GTP-binding protein TrmE N-terminus KU039_19070 PF02096 60Kd inner membrane protein KU039_19070 PF14849 YidC periplasmic domain KU039_19075 PF01809 Putative membrane protein insertion efficiency factor KU039_19080 PF00825 Ribonuclease P KU039_19085 PF00468 Ribosomal protein L34 KU039_19095 PF17841 BID domain of Bartonella effector protein (Bep) KU039_19095 PF01443 Viral (Superfamily 1) RNA helicase KU039_19095 PF03389 MobA/MobL family KU039_19125 PF00440 Bacterial regulatory proteins, tetR family KU039_19130 PF00239 Resolvase, N terminal domain KU039_19130 PF02796 Helix-turn-helix domain of resolvase KU039_19145 PF00565 Staphylococcal nuclease homologue KU039_19160 PF03135 CagE, TrbE, VirB family, component of type IV transporter system KU039_19170 PF01464 Transglycosylase SLT domain KU039_19170 PF10145 Phage-related minor tail protein KU039_19170 PF01551 Peptidase family M23 KU039_19185 PF01464 Transglycosylase SLT domain KU039_19185 PF10145 Phage-related minor tail protein KU039_19185 PF01551 Peptidase family M23 KU039_19200 PF00437 Type II/IV secretion system protein KU039_19205 PF03743 Bacterial conjugation TrbI-like protein KU039_19210 PF03524 Conjugal transfer protein KU039_19245 PF13614 AAA domain KU039_19315 PF01051 Initiator Replication protein KU039_19340 PF07715 TonB-dependent Receptor Plug Domain KU039_19340 PF00593 TonB dependent receptor KU039_19360 PF05973 Phage derived protein Gp49-like (DUF891) KU039_19375 PF03389 MobA/MobL family