locus-tag class description KUY52_00005 PF00308 Bacterial dnaA protein KUY52_00005 PF08299 Bacterial dnaA protein helix-turn-helix KUY52_00005 PF11638 DnaA N-terminal domain KUY52_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KUY52_00010 PF02767 DNA polymerase III beta subunit, central domain KUY52_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KUY52_00015 PF02463 RecF/RecN/SMC N terminal domain KUY52_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_00020 PF18053 DNA gyrase B subunit insert domain KUY52_00020 PF01751 Toprim domain KUY52_00020 PF00204 DNA gyrase B KUY52_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KUY52_00030 PF09335 SNARE associated Golgi protein KUY52_00035 PF00005 ABC transporter KUY52_00035 PF12848 ABC transporter KUY52_00055 PF01521 Iron-sulphur cluster biosynthesis KUY52_00060 PF00561 alpha/beta hydrolase fold KUY52_00065 PF03702 Anhydro-N-acetylmuramic acid kinase KUY52_00070 PF00579 tRNA synthetases class I (W and Y) KUY52_00110 PF00209 Sodium:neurotransmitter symporter family KUY52_00120 PF01029 NusB family KUY52_00120 PF01189 16S rRNA methyltransferase RsmB/F KUY52_00125 PF00551 Formyl transferase KUY52_00125 PF02911 Formyl transferase, C-terminal domain KUY52_00130 PF00920 Dehydratase family KUY52_00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_00145 PF03466 LysR substrate binding domain KUY52_00150 PF00860 Permease family KUY52_00155 PF00311 Phosphoenolpyruvate carboxylase KUY52_00160 PF08361 MAATS-type transcriptional repressor, C-terminal region KUY52_00160 PF00440 Bacterial regulatory proteins, tetR family KUY52_00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_00170 PF00873 AcrB/AcrD/AcrF family KUY52_00180 PF00684 DnaJ central domain KUY52_00180 PF00226 DnaJ domain KUY52_00180 PF01556 DnaJ C terminal domain KUY52_00190 PF01113 Dihydrodipicolinate reductase, N-terminus KUY52_00190 PF05173 Dihydrodipicolinate reductase, C-terminus KUY52_00200 PF07690 Major Facilitator Superfamily KUY52_00205 PF00248 Aldo/keto reductase family KUY52_00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_00210 PF03466 LysR substrate binding domain KUY52_00225 PF00392 Bacterial regulatory proteins, gntR family KUY52_00225 PF00155 Aminotransferase class I and II KUY52_00230 PF00107 Zinc-binding dehydrogenase KUY52_00230 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_00235 PF03352 Methyladenine glycosylase KUY52_00250 PF10576 Iron-sulfur binding domain of endonuclease III KUY52_00250 PF00633 Helix-hairpin-helix motif KUY52_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein KUY52_00250 PF14815 NUDIX domain KUY52_00265 PF07043 Protein of unknown function (DUF1328) KUY52_00270 PF03692 Putative zinc- or iron-chelating domain KUY52_00275 PF07995 Glucose / Sorbosone dehydrogenase KUY52_00280 PF12002 MgsA AAA+ ATPase C terminal KUY52_00280 PF16193 AAA C-terminal domain KUY52_00280 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_00285 PF01226 Formate/nitrite transporter KUY52_00295 PF01259 SAICAR synthetase KUY52_00305 PF00701 Dihydrodipicolinate synthetase family KUY52_00310 PF00857 Isochorismatase family KUY52_00315 PF01758 Sodium Bile acid symporter family KUY52_00320 PF01554 MatE KUY52_00325 PF04463 Protein of unknown function (DUF523) KUY52_00330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUY52_00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUY52_00345 PF14497 Glutathione S-transferase, C-terminal domain KUY52_00345 PF02798 Glutathione S-transferase, N-terminal domain KUY52_00355 PF00324 Amino acid permease KUY52_00365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUY52_00365 PF07683 Cobalamin synthesis protein cobW C-terminal domain KUY52_00375 PF00392 Bacterial regulatory proteins, gntR family KUY52_00375 PF07702 UTRA domain KUY52_00380 PF05962 HutD KUY52_00385 PF17392 Urocanase C-terminal domain KUY52_00385 PF17391 Urocanase N-terminal domain KUY52_00385 PF01175 Urocanase Rossmann-like domain KUY52_00390 PF00221 Aromatic amino acid lyase KUY52_00395 PF00324 Amino acid permease KUY52_00400 PF01979 Amidohydrolase family KUY52_00405 PF00491 Arginase family KUY52_00425 PF01177 Asp/Glu/Hydantoin racemase KUY52_00430 PF01380 SIS domain KUY52_00435 PF12804 MobA-like NTP transferase domain KUY52_00435 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_00435 PF14602 Hexapeptide repeat of succinyl-transferase KUY52_00440 PF04608 Phosphatidylglycerophosphatase A KUY52_00445 PF00586 AIR synthase related protein, N-terminal domain KUY52_00445 PF02769 AIR synthase related protein, C-terminal domain KUY52_00450 PF01029 NusB family KUY52_00455 PF00885 6,7-dimethyl-8-ribityllumazine synthase KUY52_00460 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KUY52_00460 PF00925 GTP cyclohydrolase II KUY52_00485 PF02580 D-Tyr-tRNA(Tyr) deacylase KUY52_00490 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KUY52_00490 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KUY52_00495 PF00581 Rhodanese-like domain KUY52_00500 PF02666 Phosphatidylserine decarboxylase KUY52_00505 PF03069 Acetamidase/Formamidase family KUY52_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_00525 PF00512 His Kinase A (phospho-acceptor) domain KUY52_00525 PF00989 PAS fold KUY52_00525 PF11808 Phosphate regulon sensor protein PhoR KUY52_00530 PF00072 Response regulator receiver domain KUY52_00530 PF00486 Transcriptional regulatory protein, C terminal KUY52_00540 PF00106 short chain dehydrogenase KUY52_00545 PF01554 MatE KUY52_00550 PF00155 Aminotransferase class I and II KUY52_00555 PF04286 Protein of unknown function (DUF445) KUY52_00570 PF04262 Glutamate-cysteine ligase KUY52_00575 PF02600 Disulfide bond formation protein DsbB KUY52_00580 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KUY52_00580 PF04717 Type VI secretion system, phage-baseplate injector KUY52_00580 PF13296 Putative type VI secretion system Rhs element Vgr KUY52_00585 PF01476 LysM domain KUY52_00585 PF00877 NlpC/P60 family KUY52_00605 PF05728 Uncharacterised protein family (UPF0227) KUY52_00610 PF01751 Toprim domain KUY52_00610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_00610 PF00986 DNA gyrase B subunit, carboxyl terminus KUY52_00610 PF00204 DNA gyrase B KUY52_00615 PF00106 short chain dehydrogenase KUY52_00620 PF04115 Ureidoglycolate lyase KUY52_00625 PF03561 Allantoicase repeat KUY52_00630 PF01494 FAD binding domain KUY52_00640 PF00860 Permease family KUY52_00645 PF00576 HIUase/Transthyretin family KUY52_00675 PF11412 Disulphide bond corrector protein DsbC KUY52_00675 PF02683 Cytochrome C biogenesis protein transmembrane region KUY52_00680 PF07694 5TMR of 5TMR-LYT KUY52_00680 PF00990 Diguanylate cyclase, GGDEF domain KUY52_00685 PF07859 alpha/beta hydrolase fold KUY52_00695 PF03960 ArsC family KUY52_00700 PF03372 Endonuclease/Exonuclease/phosphatase family KUY52_00705 PF00156 Phosphoribosyl transferase domain KUY52_00710 PF07715 TonB-dependent Receptor Plug Domain KUY52_00710 PF00593 TonB dependent receptor KUY52_00720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KUY52_00720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KUY52_00725 PF04101 Glycosyltransferase family 28 C-terminal domain KUY52_00725 PF03033 Glycosyltransferase family 28 N-terminal domain KUY52_00730 PF01225 Mur ligase family, catalytic domain KUY52_00730 PF02875 Mur ligase family, glutamate ligase domain KUY52_00730 PF08245 Mur ligase middle domain KUY52_00735 PF01820 D-ala D-ala ligase N-terminus KUY52_00735 PF07478 D-ala D-ala ligase C-terminus KUY52_00740 PF08478 POTRA domain, FtsQ-type KUY52_00740 PF03799 Cell division protein FtsQ KUY52_00745 PF02491 SHS2 domain inserted in FTSA KUY52_00750 PF12327 FtsZ family, C-terminal domain KUY52_00750 PF00091 Tubulin/FtsZ family, GTPase domain KUY52_00755 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KUY52_00765 PF01551 Peptidase family M23 KUY52_00770 PF00456 Transketolase, thiamine diphosphate binding domain KUY52_00770 PF17831 Pyruvate dehydrogenase E1 component middle domain KUY52_00775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUY52_00775 PF00364 Biotin-requiring enzyme KUY52_00775 PF02817 e3 binding domain KUY52_00785 PF01169 Uncharacterized protein family UPF0016 KUY52_00790 PF07715 TonB-dependent Receptor Plug Domain KUY52_00790 PF00593 TonB dependent receptor KUY52_00795 PF01613 Flavin reductase like domain KUY52_00795 PF00258 Flavodoxin KUY52_00800 PF03692 Putative zinc- or iron-chelating domain KUY52_00805 PF00478 IMP dehydrogenase / GMP reductase domain KUY52_00805 PF00571 CBS domain KUY52_00810 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUY52_00810 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUY52_00810 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUY52_00810 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUY52_00815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KUY52_00815 PF01243 Pyridoxamine 5'-phosphate oxidase KUY52_00820 PF01368 DHH family KUY52_00820 PF02272 DHHA1 domain KUY52_00820 PF17768 RecJ OB domain KUY52_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUY52_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KUY52_00850 PF04452 RNA methyltransferase KUY52_00855 PF00924 Mechanosensitive ion channel KUY52_00865 PF16177 Acetyl-coenzyme A synthetase N-terminus KUY52_00865 PF00501 AMP-binding enzyme KUY52_00865 PF13193 AMP-binding enzyme C-terminal domain KUY52_00870 PF00857 Isochorismatase family KUY52_00875 PF01037 Lrp/AsnC ligand binding domain KUY52_00880 PF00872 Transposase, Mutator family KUY52_00885 PF00296 Luciferase-like monooxygenase KUY52_00890 PF03358 NADPH-dependent FMN reductase KUY52_00895 PF00072 Response regulator receiver domain KUY52_00895 PF00196 Bacterial regulatory proteins, luxR family KUY52_00905 PF00072 Response regulator receiver domain KUY52_00905 PF01627 Hpt domain KUY52_00905 PF00512 His Kinase A (phospho-acceptor) domain KUY52_00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_00905 PF00672 HAMP domain KUY52_00910 PF04341 Protein of unknown function, DUF485 KUY52_00915 PF00474 Sodium:solute symporter family KUY52_00925 PF02028 BCCT, betaine/carnitine/choline family transporter KUY52_00935 PF00990 Diguanylate cyclase, GGDEF domain KUY52_00945 PF00005 ABC transporter KUY52_00945 PF17760 UvrA interaction domain KUY52_00945 PF17755 UvrA DNA-binding domain KUY52_00950 PF16925 Tetracyclin repressor-like, C-terminal domain KUY52_00950 PF00440 Bacterial regulatory proteins, tetR family KUY52_00955 PF00107 Zinc-binding dehydrogenase KUY52_00955 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_00965 PF06942 GlpM protein KUY52_00970 PF03070 TENA/THI-4/PQQC family KUY52_00970 PF08543 Phosphomethylpyrimidine kinase KUY52_00970 PF02581 Thiamine monophosphate synthase KUY52_00980 PF07690 Major Facilitator Superfamily KUY52_00985 PF00436 Single-strand binding protein family KUY52_00995 PF03591 AzlC protein KUY52_01005 PF00324 Amino acid permease KUY52_01010 PF00155 Aminotransferase class I and II KUY52_01010 PF00392 Bacterial regulatory proteins, gntR family KUY52_01015 PF00202 Aminotransferase class-III KUY52_01020 PF00171 Aldehyde dehydrogenase family KUY52_01025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_01030 PF00857 Isochorismatase family KUY52_01035 PF02678 Pirin KUY52_01035 PF05726 Pirin C-terminal cupin domain KUY52_01040 PF01593 Flavin containing amine oxidoreductase KUY52_01050 PF00905 Penicillin binding protein transpeptidase domain KUY52_01080 PF07690 Major Facilitator Superfamily KUY52_01085 PF03466 LysR substrate binding domain KUY52_01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_01110 PF00248 Aldo/keto reductase family KUY52_01115 PF02311 AraC-like ligand binding domain KUY52_01115 PF12833 Helix-turn-helix domain KUY52_01145 PF01638 HxlR-like helix-turn-helix KUY52_01150 PF02525 Flavodoxin-like fold KUY52_01170 PF02705 K+ potassium transporter KUY52_01195 PF00230 Major intrinsic protein KUY52_01210 PF00977 Histidine biosynthesis protein KUY52_01215 PF01636 Phosphotransferase enzyme family KUY52_01230 PF03992 Antibiotic biosynthesis monooxygenase KUY52_01245 PF00977 Histidine biosynthesis protein KUY52_01260 PF00117 Glutamine amidotransferase class-I KUY52_01265 PF00475 Imidazoleglycerol-phosphate dehydratase KUY52_01285 PF00583 Acetyltransferase (GNAT) family KUY52_01290 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain KUY52_01290 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain KUY52_01300 PF00672 HAMP domain KUY52_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_01300 PF00512 His Kinase A (phospho-acceptor) domain KUY52_01305 PF00486 Transcriptional regulatory protein, C terminal KUY52_01305 PF00072 Response regulator receiver domain KUY52_01310 PF16921 Tex protein YqgF-like domain KUY52_01310 PF09371 Tex-like protein N-terminal domain KUY52_01310 PF00575 S1 RNA binding domain KUY52_01310 PF17674 HHH domain KUY52_01315 PF00916 Sulfate permease family KUY52_01315 PF01740 STAS domain KUY52_01320 PF00106 short chain dehydrogenase KUY52_01325 PF01053 Cys/Met metabolism PLP-dependent enzyme KUY52_01330 PF00005 ABC transporter KUY52_01330 PF12848 ABC transporter KUY52_01355 PF04191 Phospholipid methyltransferase KUY52_01375 PF00529 HlyD membrane-fusion protein of T1SS KUY52_01375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_01380 PF00873 AcrB/AcrD/AcrF family KUY52_01385 PF01545 Cation efflux family KUY52_01415 PF00324 Amino acid permease KUY52_01430 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUY52_01445 PF01795 MraW methylase family KUY52_01455 PF00905 Penicillin binding protein transpeptidase domain KUY52_01455 PF03717 Penicillin-binding Protein dimerisation domain KUY52_01460 PF08245 Mur ligase middle domain KUY52_01460 PF02875 Mur ligase family, glutamate ligase domain KUY52_01460 PF01225 Mur ligase family, catalytic domain KUY52_01465 PF08245 Mur ligase middle domain KUY52_01465 PF02875 Mur ligase family, glutamate ligase domain KUY52_01465 PF01225 Mur ligase family, catalytic domain KUY52_01470 PF00953 Glycosyl transferase family 4 KUY52_01480 PF13847 Methyltransferase domain KUY52_01485 PF00912 Transglycosylase KUY52_01485 PF17092 Penicillin-binding protein OB-like domain KUY52_01485 PF00905 Penicillin binding protein transpeptidase domain KUY52_01490 PF11104 Type IV pilus assembly protein PilM; KUY52_01495 PF05137 Fimbrial assembly protein (PilN) KUY52_01500 PF04350 Pilus assembly protein, PilO KUY52_01510 PF07660 Secretin and TonB N terminus short domain KUY52_01510 PF11741 AMIN domain KUY52_01510 PF03958 Bacterial type II/III secretion system short domain KUY52_01510 PF00263 Bacterial type II and III secretion system protein KUY52_01515 PF01202 Shikimate kinase KUY52_01520 PF01761 3-dehydroquinate synthase KUY52_01530 PF00310 Glutamine amidotransferases class-II KUY52_01530 PF04898 Glutamate synthase central domain KUY52_01530 PF01645 Conserved region in glutamate synthase KUY52_01530 PF01493 GXGXG motif KUY52_01535 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_01535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KUY52_01545 PF04011 LemA family KUY52_01550 PF04536 TPM domain KUY52_01560 PF07963 Prokaryotic N-terminal methylation motif KUY52_01560 PF00114 Pilin (bacterial filament) KUY52_01565 PF04932 O-Antigen ligase KUY52_01565 PF15864 Protein glycosylation ligase KUY52_01565 PF11846 Virulence factor membrane-bound polymerase, C-terminal KUY52_01570 PF00210 Ferritin-like domain KUY52_01575 PF04324 BFD-like [2Fe-2S] binding domain KUY52_01580 PF01042 Endoribonuclease L-PSP KUY52_01585 PF04607 Region found in RelA / SpoT proteins KUY52_01585 PF02824 TGS domain KUY52_01585 PF13291 ACT domain KUY52_01595 PF01192 RNA polymerase Rpb6 KUY52_01600 PF00625 Guanylate kinase KUY52_01605 PF02401 LytB protein KUY52_01645 PF00886 Ribosomal protein S16 KUY52_01650 PF01782 RimM N-terminal domain KUY52_01650 PF05239 PRC-barrel domain KUY52_01655 PF01746 tRNA (Guanine-1)-methyltransferase KUY52_01660 PF01245 Ribosomal protein L19 KUY52_01665 PF00561 alpha/beta hydrolase fold KUY52_01670 PF03280 Proteobacterial lipase chaperone protein KUY52_01675 PF09157 Pseudouridine synthase II TruB, C-terminal KUY52_01675 PF16198 tRNA pseudouridylate synthase B C-terminal domain KUY52_01675 PF01509 TruB family pseudouridylate synthase (N terminal domain) KUY52_01680 PF01925 Sulfite exporter TauE/SafE KUY52_01700 PF10544 T5orf172 domain KUY52_01705 PF13614 AAA domain KUY52_01725 PF00905 Penicillin binding protein transpeptidase domain KUY52_01740 PF00892 EamA-like transporter family KUY52_01745 PF00892 EamA-like transporter family KUY52_01750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUY52_01750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUY52_01755 PF02913 FAD linked oxidases, C-terminal domain KUY52_01755 PF01565 FAD binding domain KUY52_01765 PF03992 Antibiotic biosynthesis monooxygenase KUY52_01770 PF02525 Flavodoxin-like fold KUY52_01780 PF07690 Major Facilitator Superfamily KUY52_01785 PF12805 FUSC-like inner membrane protein yccS KUY52_01790 PF00080 Copper/zinc superoxide dismutase (SODC) KUY52_01795 PF01594 AI-2E family transporter KUY52_01800 PF13614 AAA domain KUY52_01830 PF00324 Amino acid permease KUY52_01835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KUY52_01835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KUY52_01840 PF00202 Aminotransferase class-III KUY52_01845 PF04958 Arginine N-succinyltransferase beta subunit KUY52_01850 PF00171 Aldehyde dehydrogenase family KUY52_01855 PF04996 Succinylarginine dihydrolase KUY52_01860 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KUY52_01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_01890 PF03466 LysR substrate binding domain KUY52_01895 PF00892 EamA-like transporter family KUY52_01905 PF05746 DALR anticodon binding domain KUY52_01905 PF02092 Glycyl-tRNA synthetase beta subunit KUY52_01910 PF02091 Glycyl-tRNA synthetase alpha subunit KUY52_01935 PF00571 CBS domain KUY52_01940 PF04024 PspC domain KUY52_01950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_01950 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUY52_01950 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_01950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_01960 PF08501 Shikimate dehydrogenase substrate binding domain KUY52_01960 PF01488 Shikimate / quinate 5-dehydrogenase KUY52_01960 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KUY52_01965 PF01218 Coproporphyrinogen III oxidase KUY52_01970 PF00925 GTP cyclohydrolase II KUY52_01975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KUY52_01975 PF02779 Transketolase, pyrimidine binding domain KUY52_01975 PF02780 Transketolase, C-terminal domain KUY52_01980 PF00459 Inositol monophosphatase family KUY52_01985 PF00271 Helicase conserved C-terminal domain KUY52_01985 PF12343 Cold shock protein DEAD box A KUY52_01985 PF00270 DEAD/DEAH box helicase KUY52_01985 PF03880 DbpA RNA binding domain KUY52_01995 PF00005 ABC transporter KUY52_02000 PF02405 Permease MlaE KUY52_02010 PF05494 MlaC protein KUY52_02020 PF01544 CorA-like Mg2+ transporter protein KUY52_02025 PF03641 Possible lysine decarboxylase KUY52_02030 PF00293 NUDIX domain KUY52_02035 PF00156 Phosphoribosyl transferase domain KUY52_02040 PF00270 DEAD/DEAH box helicase KUY52_02040 PF00271 Helicase conserved C-terminal domain KUY52_02040 PF17191 RecG wedge domain KUY52_02055 PF01553 Acyltransferase KUY52_02065 PF00375 Sodium:dicarboxylate symporter family KUY52_02075 PF01926 50S ribosome-binding GTPase KUY52_02080 PF02082 Transcriptional regulator KUY52_02085 PF00970 Oxidoreductase FAD-binding domain KUY52_02085 PF00042 Globin KUY52_02085 PF00175 Oxidoreductase NAD-binding domain KUY52_02090 PF05872 Bacterial protein of unknown function (DUF853) KUY52_02095 PF01053 Cys/Met metabolism PLP-dependent enzyme KUY52_02100 PF00117 Glutamine amidotransferase class-I KUY52_02105 PF00338 Ribosomal protein S10p/S20e KUY52_02110 PF00297 Ribosomal protein L3 KUY52_02115 PF00573 Ribosomal protein L4/L1 family KUY52_02120 PF00276 Ribosomal protein L23 KUY52_02125 PF00181 Ribosomal Proteins L2, RNA binding domain KUY52_02125 PF03947 Ribosomal Proteins L2, C-terminal domain KUY52_02130 PF00203 Ribosomal protein S19 KUY52_02135 PF00237 Ribosomal protein L22p/L17e KUY52_02140 PF07650 KH domain KUY52_02140 PF00189 Ribosomal protein S3, C-terminal domain KUY52_02145 PF00252 Ribosomal protein L16p/L10e KUY52_02150 PF00831 Ribosomal L29 protein KUY52_02155 PF00366 Ribosomal protein S17 KUY52_02160 PF00238 Ribosomal protein L14p/L23e KUY52_02165 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KUY52_02165 PF00467 KOW motif KUY52_02170 PF00673 ribosomal L5P family C-terminus KUY52_02170 PF00281 Ribosomal protein L5 KUY52_02175 PF00253 Ribosomal protein S14p/S29e KUY52_02180 PF00410 Ribosomal protein S8 KUY52_02185 PF00347 Ribosomal protein L6 KUY52_02190 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KUY52_02195 PF00333 Ribosomal protein S5, N-terminal domain KUY52_02195 PF03719 Ribosomal protein S5, C-terminal domain KUY52_02200 PF00327 Ribosomal protein L30p/L7e KUY52_02205 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KUY52_02210 PF00344 SecY translocase KUY52_02215 PF00444 Ribosomal protein L36 KUY52_02220 PF00416 Ribosomal protein S13/S18 KUY52_02225 PF00411 Ribosomal protein S11 KUY52_02230 PF00163 Ribosomal protein S4/S9 N-terminal domain KUY52_02230 PF01479 S4 domain KUY52_02235 PF01000 RNA polymerase Rpb3/RpoA insert domain KUY52_02235 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KUY52_02235 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KUY52_02240 PF01196 Ribosomal protein L17 KUY52_02245 PF00743 Flavin-binding monooxygenase-like KUY52_02250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_02250 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_02250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_02255 PF03937 Flavinator of succinate dehydrogenase KUY52_02285 PF09526 Probable metal-binding protein (DUF2387) KUY52_02290 PF01432 Peptidase family M3 KUY52_02295 PF17876 Cold shock domain KUY52_02295 PF08461 Ribonuclease R winged-helix domain KUY52_02295 PF08206 Ribonuclease B OB domain KUY52_02295 PF00773 RNB domain KUY52_02295 PF00575 S1 RNA binding domain KUY52_02340 PF01557 Fumarylacetoacetate (FAA) hydrolase family KUY52_02345 PF12833 Helix-turn-helix domain KUY52_02350 PF00892 EamA-like transporter family KUY52_02355 PF03631 Virulence factor BrkB KUY52_02360 PF03358 NADPH-dependent FMN reductase KUY52_02385 PF02130 Uncharacterized protein family UPF0054 KUY52_02390 PF02562 PhoH-like protein KUY52_02395 PF04055 Radical SAM superfamily KUY52_02395 PF01938 TRAM domain KUY52_02395 PF00919 Uncharacterized protein family UPF0004 KUY52_02400 PF10145 Phage-related minor tail protein KUY52_02400 PF01464 Transglycosylase SLT domain KUY52_02400 PF01551 Peptidase family M23 KUY52_02410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KUY52_02410 PF00056 lactate/malate dehydrogenase, NAD binding domain KUY52_02430 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KUY52_02435 PF01066 CDP-alcohol phosphatidyltransferase KUY52_02480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_02480 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_02480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_02485 PF17932 Tetracyclin repressor-like, C-terminal domain KUY52_02485 PF00440 Bacterial regulatory proteins, tetR family KUY52_02500 PF01039 Carboxyl transferase domain KUY52_02505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_02505 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_02505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_02515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUY52_02515 PF02785 Biotin carboxylase C-terminal domain KUY52_02515 PF00289 Biotin carboxylase, N-terminal domain KUY52_02515 PF00364 Biotin-requiring enzyme KUY52_02525 PF04386 Stringent starvation protein B KUY52_02530 PF00043 Glutathione S-transferase, C-terminal domain KUY52_02530 PF13417 Glutathione S-transferase, N-terminal domain KUY52_02535 PF00380 Ribosomal protein S9/S16 KUY52_02540 PF00572 Ribosomal protein L13 KUY52_02545 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KUY52_02550 PF00398 Ribosomal RNA adenine dimethylase KUY52_02555 PF00149 Calcineurin-like phosphoesterase KUY52_02575 PF16360 GTP-binding GTPase Middle Region KUY52_02575 PF13167 GTP-binding GTPase N-terminal KUY52_02575 PF01926 50S ribosome-binding GTPase KUY52_02585 PF13091 PLD-like domain KUY52_02590 PF10518 TAT (twin-arginine translocation) pathway signal sequence KUY52_02590 PF00149 Calcineurin-like phosphoesterase KUY52_02595 PF00691 OmpA family KUY52_02595 PF01389 OmpA-like transmembrane domain KUY52_02600 PF17152 Periplasmic sensor domain KUY52_02600 PF00990 Diguanylate cyclase, GGDEF domain KUY52_02635 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_02635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUY52_02645 PF04273 Putative phosphatase (DUF442) KUY52_02645 PF00753 Metallo-beta-lactamase superfamily KUY52_02650 PF00561 alpha/beta hydrolase fold KUY52_02655 PF00085 Thioredoxin KUY52_02660 PF03061 Thioesterase superfamily KUY52_02670 PF04461 Protein of unknown function (DUF520) KUY52_02680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KUY52_02680 PF01266 FAD dependent oxidoreductase KUY52_02690 PF03795 YCII-related domain KUY52_02695 PF04279 Intracellular septation protein A KUY52_02700 PF02811 PHP domain KUY52_02705 PF01062 Bestrophin, RFP-TM, chloride channel KUY52_02710 PF04002 RadC-like JAB domain KUY52_02715 PF04127 DNA / pantothenate metabolism flavoprotein KUY52_02715 PF02441 Flavoprotein KUY52_02720 PF02355 Protein export membrane protein KUY52_02720 PF07549 SecD/SecF GG Motif KUY52_02725 PF07549 SecD/SecF GG Motif KUY52_02725 PF13721 SecD export protein N-terminal TM region KUY52_02725 PF02355 Protein export membrane protein KUY52_02730 PF02699 Preprotein translocase subunit KUY52_02735 PF01702 Queuine tRNA-ribosyltransferase KUY52_02750 PF02547 Queuosine biosynthesis protein KUY52_02775 PF00512 His Kinase A (phospho-acceptor) domain KUY52_02775 PF07689 KaiB domain KUY52_02775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_02780 PF03710 Glutamate-ammonia ligase adenylyltransferase KUY52_02780 PF08335 GlnD PII-uridylyltransferase KUY52_02785 PF01063 Amino-transferase class IV KUY52_02800 PF01522 Polysaccharide deacetylase KUY52_02805 PF00535 Glycosyl transferase family 2 KUY52_02810 PF00534 Glycosyl transferases group 1 KUY52_02810 PF13439 Glycosyltransferase Family 4 KUY52_02850 PF02938 GAD domain KUY52_02850 PF00152 tRNA synthetases class II (D, K and N) KUY52_02850 PF01336 OB-fold nucleic acid binding domain KUY52_02860 PF07715 TonB-dependent Receptor Plug Domain KUY52_02860 PF00593 TonB dependent receptor KUY52_02880 PF06146 Phosphate-starvation-inducible E KUY52_02885 PF02798 Glutathione S-transferase, N-terminal domain KUY52_02885 PF00043 Glutathione S-transferase, C-terminal domain KUY52_02890 PF03466 LysR substrate binding domain KUY52_02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_02895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_02895 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUY52_02895 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_02895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_02900 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_02900 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUY52_02900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_02900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_02910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_02910 PF00512 His Kinase A (phospho-acceptor) domain KUY52_02910 PF00672 HAMP domain KUY52_02915 PF00486 Transcriptional regulatory protein, C terminal KUY52_02915 PF00072 Response regulator receiver domain KUY52_02920 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KUY52_02940 PF01923 Cobalamin adenosyltransferase KUY52_02945 PF07715 TonB-dependent Receptor Plug Domain KUY52_02945 PF00593 TonB dependent receptor KUY52_02950 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KUY52_02955 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_02980 PF00290 Tryptophan synthase alpha chain KUY52_02985 PF01039 Carboxyl transferase domain KUY52_02990 PF02875 Mur ligase family, glutamate ligase domain KUY52_02990 PF08245 Mur ligase middle domain KUY52_03005 PF00753 Metallo-beta-lactamase superfamily KUY52_03010 PF10417 C-terminal domain of 1-Cys peroxiredoxin KUY52_03010 PF00578 AhpC/TSA family KUY52_03015 PF07516 SecA Wing and Scaffold domain KUY52_03015 PF02810 SEC-C motif KUY52_03015 PF01043 SecA preprotein cross-linking domain KUY52_03015 PF07517 SecA DEAD-like domain KUY52_03025 PF00083 Sugar (and other) transporter KUY52_03025 PF07690 Major Facilitator Superfamily KUY52_03030 PF03006 Haemolysin-III related KUY52_03055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUY52_03055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUY52_03055 PF00378 Enoyl-CoA hydratase/isomerase KUY52_03060 PF02803 Thiolase, C-terminal domain KUY52_03060 PF00108 Thiolase, N-terminal domain KUY52_03065 PF02311 AraC-like ligand binding domain KUY52_03065 PF12833 Helix-turn-helix domain KUY52_03070 PF02515 CoA-transferase family III KUY52_03075 PF04966 Carbohydrate-selective porin, OprB family KUY52_03080 PF01011 PQQ enzyme repeat KUY52_03085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KUY52_03085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KUY52_03095 PF00893 Small Multidrug Resistance protein KUY52_03105 PF02803 Thiolase, C-terminal domain KUY52_03105 PF00108 Thiolase, N-terminal domain KUY52_03115 PF00691 OmpA family KUY52_03115 PF13505 Outer membrane protein beta-barrel domain KUY52_03125 PF01139 tRNA-splicing ligase RtcB KUY52_03130 PF00324 Amino acid permease KUY52_03135 PF08468 Methyltransferase small domain N-terminal KUY52_03135 PF05175 Methyltransferase small domain KUY52_03140 PF00860 Permease family KUY52_03145 PF03144 Elongation factor Tu domain 2 KUY52_03145 PF00009 Elongation factor Tu GTP binding domain KUY52_03145 PF00679 Elongation factor G C-terminus KUY52_03150 PF01741 Large-conductance mechanosensitive channel, MscL KUY52_03165 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KUY52_03165 PF06827 Zinc finger found in FPG and IleRS KUY52_03165 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KUY52_03170 PF02245 Methylpurine-DNA glycosylase (MPG) KUY52_03175 PF00593 TonB dependent receptor KUY52_03175 PF07715 TonB-dependent Receptor Plug Domain KUY52_03180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUY52_03195 PF13098 Thioredoxin-like domain KUY52_03195 PF10411 Disulfide bond isomerase protein N-terminus KUY52_03200 PF01571 Aminomethyltransferase folate-binding domain KUY52_03210 PF04343 Protein of unknown function, DUF488 KUY52_03215 PF08274 PhnA Zinc-Ribbon KUY52_03215 PF03831 PhnA domain KUY52_03220 PF07411 Domain of unknown function (DUF1508) KUY52_03225 PF03129 Anticodon binding domain KUY52_03225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUY52_03225 PF04073 Aminoacyl-tRNA editing domain KUY52_03230 PF00873 AcrB/AcrD/AcrF family KUY52_03245 PF00072 Response regulator receiver domain KUY52_03250 PF00072 Response regulator receiver domain KUY52_03255 PF01584 CheW-like domain KUY52_03260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KUY52_03260 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KUY52_03265 PF01584 CheW-like domain KUY52_03265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_03265 PF01627 Hpt domain KUY52_03265 PF00072 Response regulator receiver domain KUY52_03275 PF07687 Peptidase dimerisation domain KUY52_03275 PF01546 Peptidase family M20/M25/M40 KUY52_03280 PF08085 Entericidin EcnA/B family KUY52_03290 PF04304 Protein of unknown function (DUF454) KUY52_03295 PF17969 L,D-transpeptidase C-terminal domain KUY52_03295 PF03734 L,D-transpeptidase catalytic domain KUY52_03335 PF00175 Oxidoreductase NAD-binding domain KUY52_03335 PF00258 Flavodoxin KUY52_03335 PF00667 FAD binding domain KUY52_03345 PF12805 FUSC-like inner membrane protein yccS KUY52_03350 PF07690 Major Facilitator Superfamily KUY52_03355 PF00881 Nitroreductase family KUY52_03370 PF01235 Sodium:alanine symporter family KUY52_03375 PF01734 Patatin-like phospholipase KUY52_03380 PF13291 ACT domain KUY52_03380 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_03385 PF05992 SbmA/BacA-like family KUY52_03415 PF02637 GatB domain KUY52_03415 PF02934 GatB/GatE catalytic domain KUY52_03420 PF01425 Amidase KUY52_03425 PF02686 Glu-tRNAGln amidotransferase C subunit KUY52_03435 PF04085 rod shape-determining protein MreC KUY52_03440 PF04093 rod shape-determining protein MreD KUY52_03445 PF02545 Maf-like protein KUY52_03450 PF10150 Ribonuclease E/G family KUY52_03450 PF00575 S1 RNA binding domain KUY52_03460 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KUY52_03460 PF06974 Protein of unknown function (DUF1298) KUY52_03465 PF01507 Phosphoadenosine phosphosulfate reductase family KUY52_03480 PF02525 Flavodoxin-like fold KUY52_03500 PF02673 Bacitracin resistance protein BacA KUY52_03505 PF12833 Helix-turn-helix domain KUY52_03505 PF06719 AraC-type transcriptional regulator N-terminus KUY52_03510 PF00550 Phosphopantetheine attachment site KUY52_03510 PF14765 Polyketide synthase dehydratase KUY52_03510 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_03510 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_03510 PF08659 KR domain KUY52_03510 PF09277 Erythronolide synthase, docking KUY52_03510 PF00698 Acyl transferase domain KUY52_03510 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_03510 PF08990 Erythronolide synthase docking KUY52_03510 PF16197 Ketoacyl-synthetase C-terminal extension KUY52_03515 PF01965 DJ-1/PfpI family KUY52_03525 PF00324 Amino acid permease KUY52_03530 PF04303 PrpF protein KUY52_03535 PF00348 Polyprenyl synthetase KUY52_03540 PF04237 YjbR KUY52_03545 PF01145 SPFH domain / Band 7 family KUY52_03555 PF01734 Patatin-like phospholipase KUY52_03580 PF08019 Phosphoethanolamine transferase EptA/EptB KUY52_03580 PF00884 Sulfatase KUY52_03585 PF00072 Response regulator receiver domain KUY52_03585 PF00486 Transcriptional regulatory protein, C terminal KUY52_03590 PF08521 Two-component sensor kinase N-terminal KUY52_03590 PF00512 His Kinase A (phospho-acceptor) domain KUY52_03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_03600 PF00909 Ammonium Transporter Family KUY52_03605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_03605 PF03466 LysR substrate binding domain KUY52_03625 PF08264 Anticodon-binding domain of tRNA KUY52_03625 PF00133 tRNA synthetases class I (I, L, M and V) KUY52_03625 PF10458 Valyl tRNA synthetase tRNA binding arm KUY52_03645 PF01906 Putative heavy-metal-binding KUY52_03650 PF01906 Putative heavy-metal-binding KUY52_03655 PF02321 Outer membrane efflux protein KUY52_03660 PF00873 AcrB/AcrD/AcrF family KUY52_03665 PF00529 HlyD membrane-fusion protein of T1SS KUY52_03665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_03670 PF01569 PAP2 superfamily KUY52_03680 PF00348 Polyprenyl synthetase KUY52_03690 PF00829 Ribosomal prokaryotic L21 protein KUY52_03695 PF01016 Ribosomal L27 protein KUY52_03700 PF03548 Outer membrane lipoprotein carrier protein LolA KUY52_03710 PF02403 Seryl-tRNA synthetase N-terminal domain KUY52_03710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUY52_03715 PF10414 Sirohaem synthase dimerisation region KUY52_03715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KUY52_03715 PF14824 Sirohaem biosynthesis protein central KUY52_03720 PF00588 SpoU rRNA Methylase family KUY52_03725 PF01638 HxlR-like helix-turn-helix KUY52_03730 PF03358 NADPH-dependent FMN reductase KUY52_03735 PF13520 Amino acid permease KUY52_03740 PF00465 Iron-containing alcohol dehydrogenase KUY52_03750 PF03099 Biotin/lipoate A/B protein ligase family KUY52_03755 PF04359 Protein of unknown function (DUF493) KUY52_03760 PF04545 Sigma-70, region 4 KUY52_03760 PF04539 Sigma-70 region 3 KUY52_03760 PF04546 Sigma-70, non-essential region KUY52_03760 PF03979 Sigma-70 factor, region 1.1 KUY52_03760 PF00140 Sigma-70 factor, region 1.2 KUY52_03760 PF04542 Sigma-70 region 2 KUY52_03780 PF00581 Rhodanese-like domain KUY52_03780 PF17773 UPF0176 acylphosphatase like domain KUY52_03790 PF00285 Citrate synthase, C-terminal domain KUY52_03795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KUY52_03800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KUY52_03805 PF00890 FAD binding domain KUY52_03805 PF02910 Fumarate reductase flavoprotein C-term KUY52_03810 PF13085 2Fe-2S iron-sulfur cluster binding domain KUY52_03825 PF16870 2-oxoglutarate dehydrogenase C-terminal KUY52_03825 PF02779 Transketolase, pyrimidine binding domain KUY52_03825 PF16078 2-oxoglutarate dehydrogenase N-terminus KUY52_03825 PF00676 Dehydrogenase E1 component KUY52_03830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUY52_03830 PF00364 Biotin-requiring enzyme KUY52_03830 PF02817 e3 binding domain KUY52_03835 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_03835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUY52_03840 PF08442 ATP-grasp domain KUY52_03840 PF00549 CoA-ligase KUY52_03845 PF02629 CoA binding domain KUY52_03845 PF00549 CoA-ligase KUY52_03850 PF00579 tRNA synthetases class I (W and Y) KUY52_03855 PF05661 Protein of unknown function (DUF808) KUY52_03860 PF04228 Putative neutral zinc metallopeptidase KUY52_03865 PF00999 Sodium/hydrogen exchanger family KUY52_03920 PF09587 Bacterial capsule synthesis protein PGA_cap KUY52_03930 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KUY52_03935 PF00582 Universal stress protein family KUY52_03940 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_03945 PF01272 Transcription elongation factor, GreA/GreB, C-term KUY52_03945 PF03449 Transcription elongation factor, N-terminal KUY52_03950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUY52_03950 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KUY52_03950 PF02142 MGS-like domain KUY52_03955 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KUY52_03955 PF00117 Glutamine amidotransferase class-I KUY52_03970 PF01985 CRS1 / YhbY (CRM) domain KUY52_03975 PF01728 FtsJ-like methyltransferase KUY52_03980 PF01434 Peptidase family M41 KUY52_03980 PF17862 AAA+ lid domain KUY52_03980 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_03980 PF06480 FtsH Extracellular KUY52_03985 PF00809 Pterin binding enzyme KUY52_04005 PF09423 PhoD-like phosphatase KUY52_04005 PF16655 PhoD-like phosphatase, N-terminal domain KUY52_04020 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KUY52_04020 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KUY52_04035 PF00083 Sugar (and other) transporter KUY52_04040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KUY52_04040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KUY52_04045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KUY52_04045 PF01266 FAD dependent oxidoreductase KUY52_04050 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain KUY52_04050 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain KUY52_04055 PF00781 Diacylglycerol kinase catalytic domain KUY52_04060 PF00149 Calcineurin-like phosphoesterase KUY52_04070 PF00166 Chaperonin 10 Kd subunit KUY52_04075 PF00118 TCP-1/cpn60 chaperonin family KUY52_04080 PF01219 Prokaryotic diacylglycerol kinase KUY52_04085 PF00753 Metallo-beta-lactamase superfamily KUY52_04090 PF03009 Glycerophosphoryl diester phosphodiesterase family KUY52_04095 PF00873 AcrB/AcrD/AcrF family KUY52_04105 PF01435 Peptidase family M48 KUY52_04110 PF01464 Transglycosylase SLT domain KUY52_04115 PF01171 PP-loop family KUY52_04125 PF01464 Transglycosylase SLT domain KUY52_04125 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUY52_04130 PF01272 Transcription elongation factor, GreA/GreB, C-term KUY52_04130 PF03449 Transcription elongation factor, N-terminal KUY52_04145 PF13193 AMP-binding enzyme C-terminal domain KUY52_04145 PF00668 Condensation domain KUY52_04145 PF00550 Phosphopantetheine attachment site KUY52_04145 PF00975 Thioesterase domain KUY52_04145 PF00501 AMP-binding enzyme KUY52_04170 PF00881 Nitroreductase family KUY52_04185 PF02595 Glycerate kinase family KUY52_04190 PF00384 Molybdopterin oxidoreductase KUY52_04195 PF02634 FdhD/NarQ family KUY52_04200 PF06803 Protein of unknown function (DUF1232) KUY52_04205 PF11890 Domain of unknown function (DUF3410) KUY52_04205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUY52_04205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUY52_04210 PF00152 tRNA synthetases class II (D, K and N) KUY52_04220 PF18073 Rubredoxin metal binding domain KUY52_04225 PF00324 Amino acid permease KUY52_04235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KUY52_04235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KUY52_04240 PF01678 Diaminopimelate epimerase KUY52_04245 PF01810 LysE type translocator KUY52_04250 PF02899 Phage integrase, N-terminal SAM-like domain KUY52_04250 PF00589 Phage integrase family KUY52_04255 PF01012 Electron transfer flavoprotein domain KUY52_04260 PF00766 Electron transfer flavoprotein FAD-binding domain KUY52_04260 PF01012 Electron transfer flavoprotein domain KUY52_04265 PF03989 DNA gyrase C-terminal domain, beta-propeller KUY52_04265 PF00521 DNA gyrase/topoisomerase IV, subunit A KUY52_04280 PF00535 Glycosyl transferase family 2 KUY52_04300 PF13533 Biotin-lipoyl like KUY52_04310 PF00266 Aminotransferase class-V KUY52_04325 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KUY52_04335 PF02687 FtsX-like permease family KUY52_04335 PF12704 MacB-like periplasmic core domain KUY52_04340 PF00005 ABC transporter KUY52_04345 PF00753 Metallo-beta-lactamase superfamily KUY52_04345 PF13567 Domain of unknown function (DUF4131) KUY52_04345 PF03772 Competence protein KUY52_04355 PF01343 Peptidase family S49 KUY52_04355 PF06965 Na+/H+ antiporter 1 KUY52_04360 PF12697 Alpha/beta hydrolase family KUY52_04365 PF00551 Formyl transferase KUY52_04370 PF00586 AIR synthase related protein, N-terminal domain KUY52_04370 PF02769 AIR synthase related protein, C-terminal domain KUY52_04375 PF01594 AI-2E family transporter KUY52_04380 PF00308 Bacterial dnaA protein KUY52_04380 PF08299 Bacterial dnaA protein helix-turn-helix KUY52_04380 PF11638 DnaA N-terminal domain KUY52_04410 PF00588 SpoU rRNA Methylase family KUY52_04410 PF08032 RNA 2'-O ribose methyltransferase substrate binding KUY52_04415 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KUY52_04425 PF00691 OmpA family KUY52_04430 PF07676 WD40-like Beta Propeller Repeat KUY52_04430 PF04052 TolB amino-terminal domain KUY52_04440 PF02472 Biopolymer transport protein ExbD/TolR KUY52_04445 PF01618 MotA/TolQ/ExbB proton channel family KUY52_04450 PF03061 Thioesterase superfamily KUY52_04455 PF07687 Peptidase dimerisation domain KUY52_04455 PF01546 Peptidase family M20/M25/M40 KUY52_04460 PF17864 RuvB AAA lid domain KUY52_04460 PF05491 RuvB C-terminal winged helix domain KUY52_04460 PF05496 Holliday junction DNA helicase RuvB P-loop domain KUY52_04465 PF07499 RuvA, C-terminal domain KUY52_04465 PF01330 RuvA N terminal domain KUY52_04470 PF01966 HD domain KUY52_04475 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KUY52_04475 PF02769 AIR synthase related protein, C-terminal domain KUY52_04475 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KUY52_04480 PF07690 Major Facilitator Superfamily KUY52_04485 PF01784 NIF3 (NGG1p interacting factor 3) KUY52_04490 PF00378 Enoyl-CoA hydratase/isomerase KUY52_04495 PF00293 NUDIX domain KUY52_04495 PF01467 Cytidylyltransferase-like KUY52_04505 PF00578 AhpC/TSA family KUY52_04520 PF06508 Queuosine biosynthesis protein QueC KUY52_04530 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KUY52_04530 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_04530 PF14602 Hexapeptide repeat of succinyl-transferase KUY52_04540 PF03466 LysR substrate binding domain KUY52_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_04545 PF00005 ABC transporter KUY52_04545 PF12857 TOBE-like domain KUY52_04550 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_04555 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_04570 PF01063 Amino-transferase class IV KUY52_04575 PF02618 YceG-like family KUY52_04580 PF02223 Thymidylate kinase KUY52_04590 PF00890 FAD binding domain KUY52_04590 PF02910 Fumarate reductase flavoprotein C-term KUY52_04595 PF13180 PDZ domain KUY52_04605 PF00679 Elongation factor G C-terminus KUY52_04605 PF00009 Elongation factor Tu GTP binding domain KUY52_04605 PF03144 Elongation factor Tu domain 2 KUY52_04605 PF06421 GTP-binding protein LepA C-terminus KUY52_04610 PF10502 Signal peptidase, peptidase S26 KUY52_04620 PF00035 Double-stranded RNA binding motif KUY52_04620 PF14622 Ribonuclease-III-like KUY52_04625 PF07650 KH domain KUY52_04625 PF01926 50S ribosome-binding GTPase KUY52_04635 PF02565 Recombination protein O C terminal KUY52_04635 PF11967 Recombination protein O N terminal KUY52_04640 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KUY52_04645 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KUY52_04650 PF00106 short chain dehydrogenase KUY52_04680 PF00155 Aminotransferase class I and II KUY52_04690 PF17151 Periplasmic sensor domain KUY52_04690 PF00990 Diguanylate cyclase, GGDEF domain KUY52_04700 PF00271 Helicase conserved C-terminal domain KUY52_04700 PF04851 Type III restriction enzyme, res subunit KUY52_04700 PF02151 UvrB/uvrC motif KUY52_04700 PF12344 Ultra-violet resistance protein B KUY52_04700 PF17757 UvrB interaction domain KUY52_04710 PF00892 EamA-like transporter family KUY52_04715 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KUY52_04715 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KUY52_04730 PF01926 50S ribosome-binding GTPase KUY52_04730 PF01018 GTP1/OBG KUY52_04735 PF00696 Amino acid kinase family KUY52_04735 PF01472 PUA domain KUY52_04745 PF07759 Protein of unknown function (DUF1615) KUY52_04750 PF01207 Dihydrouridine synthase (Dus) KUY52_04755 PF03060 Nitronate monooxygenase KUY52_04770 PF02350 UDP-N-acetylglucosamine 2-epimerase KUY52_04800 PF00875 DNA photolyase KUY52_04800 PF03441 FAD binding domain of DNA photolyase KUY52_04805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUY52_04810 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_04815 PF07943 Penicillin-binding protein 5, C-terminal domain KUY52_04815 PF00768 D-alanyl-D-alanine carboxypeptidase KUY52_04825 PF03971 Monomeric isocitrate dehydrogenase KUY52_04830 PF00849 RNA pseudouridylate synthase KUY52_04835 PF00180 Isocitrate/isopropylmalate dehydrogenase KUY52_04855 PF06779 Uncharacterised MFS-type transporter YbfB KUY52_04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_04860 PF03466 LysR substrate binding domain KUY52_04865 PF00375 Sodium:dicarboxylate symporter family KUY52_04870 PF02567 Phenazine biosynthesis-like protein KUY52_04875 PF00675 Insulinase (Peptidase family M16) KUY52_04875 PF05193 Peptidase M16 inactive domain KUY52_04900 PF02581 Thiamine monophosphate synthase KUY52_04905 PF00202 Aminotransferase class-III KUY52_04915 PF00849 RNA pseudouridylate synthase KUY52_04920 PF00271 Helicase conserved C-terminal domain KUY52_04920 PF12137 RNA polymerase recycling family C-terminal KUY52_04920 PF00176 SNF2 family N-terminal domain KUY52_04920 PF18339 RapA N-terminal Tudor like domain 1 KUY52_04920 PF18337 RapA N-terminal Tudor like domain KUY52_04930 PF00440 Bacterial regulatory proteins, tetR family KUY52_04935 PF00175 Oxidoreductase NAD-binding domain KUY52_04935 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_04935 PF00970 Oxidoreductase FAD-binding domain KUY52_04940 PF00487 Fatty acid desaturase KUY52_04950 PF00440 Bacterial regulatory proteins, tetR family KUY52_04950 PF17754 MftR C-terminal domain KUY52_04960 PF00202 Aminotransferase class-III KUY52_04965 PF00282 Pyridoxal-dependent decarboxylase conserved domain KUY52_04970 PF00171 Aldehyde dehydrogenase family KUY52_04975 PF01037 Lrp/AsnC ligand binding domain KUY52_04980 PF00205 Thiamine pyrophosphate enzyme, central domain KUY52_04980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUY52_04980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUY52_04985 PF00324 Amino acid permease KUY52_04990 PF12849 PBP superfamily domain KUY52_04995 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_05000 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_05005 PF00005 ABC transporter KUY52_05010 PF01343 Peptidase family S49 KUY52_05010 PF08496 Peptidase family S49 N-terminal KUY52_05025 PF00206 Lyase KUY52_05025 PF08328 Adenylosuccinate lyase C-terminal KUY52_05030 PF04356 Protein of unknown function (DUF489) KUY52_05040 PF13344 Haloacid dehalogenase-like hydrolase KUY52_05040 PF00293 NUDIX domain KUY52_05045 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_05050 PF07943 Penicillin-binding protein 5, C-terminal domain KUY52_05050 PF00768 D-alanyl-D-alanine carboxypeptidase KUY52_05065 PF01975 Survival protein SurE KUY52_05070 PF01476 LysM domain KUY52_05070 PF01551 Peptidase family M23 KUY52_05075 PF03466 LysR substrate binding domain KUY52_05075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_05080 PF13654 AAA domain KUY52_05080 PF05362 Lon protease (S16) C-terminal proteolytic domain KUY52_05085 PF07690 Major Facilitator Superfamily KUY52_05090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUY52_05095 PF13593 SBF-like CPA transporter family (DUF4137) KUY52_05100 PF01197 Ribosomal protein L31 KUY52_05115 PF04055 Radical SAM superfamily KUY52_05120 PF01132 Elongation factor P (EF-P) OB domain KUY52_05120 PF08207 Elongation factor P (EF-P) KOW-like domain KUY52_05120 PF09285 Elongation factor P, C-terminal KUY52_05125 PF02554 Carbon starvation protein CstA KUY52_05125 PF13722 5TM C-terminal transporter carbon starvation CstA KUY52_05130 PF04328 Selenoprotein, putative KUY52_05160 PF06018 CodY GAF-like domain KUY52_05160 PF17853 GGDEF-like domain KUY52_05160 PF13556 PucR C-terminal helix-turn-helix domain KUY52_05175 PF00171 Aldehyde dehydrogenase family KUY52_05180 PF00324 Amino acid permease KUY52_05185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_05185 PF03466 LysR substrate binding domain KUY52_05190 PF02028 BCCT, betaine/carnitine/choline family transporter KUY52_05195 PF02028 BCCT, betaine/carnitine/choline family transporter KUY52_05200 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUY52_05200 PF00355 Rieske [2Fe-2S] domain KUY52_05205 PF00171 Aldehyde dehydrogenase family KUY52_05210 PF18113 Rubredoxin binding C-terminal domain KUY52_05210 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_05215 PF01266 FAD dependent oxidoreductase KUY52_05215 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KUY52_05235 PF00892 EamA-like transporter family KUY52_05245 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system KUY52_05250 PF00083 Sugar (and other) transporter KUY52_05255 PF13378 Enolase C-terminal domain-like KUY52_05255 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KUY52_05260 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_05260 PF14765 Polyketide synthase dehydratase KUY52_05260 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_05260 PF08990 Erythronolide synthase docking KUY52_05260 PF09277 Erythronolide synthase, docking KUY52_05260 PF16197 Ketoacyl-synthetase C-terminal extension KUY52_05260 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_05260 PF08659 KR domain KUY52_05260 PF00550 Phosphopantetheine attachment site KUY52_05260 PF00698 Acyl transferase domain KUY52_05265 PF00440 Bacterial regulatory proteins, tetR family KUY52_05285 PF17954 Quercetinase C-terminal cupin domain KUY52_05285 PF02678 Pirin KUY52_05295 PF08348 YheO-like PAS domain KUY52_05295 PF13309 HTH domain KUY52_05305 PF13193 AMP-binding enzyme C-terminal domain KUY52_05305 PF00501 AMP-binding enzyme KUY52_05305 PF00550 Phosphopantetheine attachment site KUY52_05305 PF00668 Condensation domain KUY52_05310 PF13193 AMP-binding enzyme C-terminal domain KUY52_05310 PF00550 Phosphopantetheine attachment site KUY52_05310 PF00501 AMP-binding enzyme KUY52_05310 PF00975 Thioesterase domain KUY52_05310 PF00668 Condensation domain KUY52_05315 PF01032 FecCD transport family KUY52_05320 PF01032 FecCD transport family KUY52_05325 PF00005 ABC transporter KUY52_05330 PF01497 Periplasmic binding protein KUY52_05335 PF00593 TonB dependent receptor KUY52_05335 PF07715 TonB-dependent Receptor Plug Domain KUY52_05340 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KUY52_05345 PF00550 Phosphopantetheine attachment site KUY52_05345 PF00501 AMP-binding enzyme KUY52_05345 PF00668 Condensation domain KUY52_05350 PF00501 AMP-binding enzyme KUY52_05350 PF13193 AMP-binding enzyme C-terminal domain KUY52_05355 PF00857 Isochorismatase family KUY52_05355 PF00550 Phosphopantetheine attachment site KUY52_05360 PF00282 Pyridoxal-dependent decarboxylase conserved domain KUY52_05370 PF00005 ABC transporter KUY52_05375 PF00005 ABC transporter KUY52_05380 PF00975 Thioesterase domain KUY52_05390 PF00425 chorismate binding enzyme KUY52_05400 PF01208 Uroporphyrinogen decarboxylase (URO-D) KUY52_05405 PF05675 Protein of unknown function (DUF817) KUY52_05420 PF00144 Beta-lactamase KUY52_05425 PF01227 GTP cyclohydrolase I KUY52_05430 PF01799 [2Fe-2S] binding domain KUY52_05430 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_05435 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KUY52_05435 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KUY52_05450 PF00218 Indole-3-glycerol phosphate synthase KUY52_05455 PF02885 Glycosyl transferase family, helical bundle domain KUY52_05455 PF00591 Glycosyl transferase family, a/b domain KUY52_05460 PF00593 TonB dependent receptor KUY52_05460 PF07715 TonB-dependent Receptor Plug Domain KUY52_05465 PF11838 ERAP1-like C-terminal domain KUY52_05465 PF01433 Peptidase family M1 domain KUY52_05470 PF00117 Glutamine amidotransferase class-I KUY52_05480 PF00854 POT family KUY52_05485 PF00120 Glutamine synthetase, catalytic domain KUY52_05485 PF03951 Glutamine synthetase, beta-Grasp domain KUY52_05490 PF04345 Chorismate lyase KUY52_05495 PF01040 UbiA prenyltransferase family KUY52_05530 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KUY52_05530 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KUY52_05535 PF01784 NIF3 (NGG1p interacting factor 3) KUY52_05540 PF13180 PDZ domain KUY52_05545 PF12627 Probable RNA and SrmB- binding site of polymerase A KUY52_05545 PF01743 Poly A polymerase head domain KUY52_05550 PF01515 Phosphate acetyl/butaryl transferase KUY52_05550 PF03949 Malic enzyme, NAD binding domain KUY52_05550 PF00390 Malic enzyme, N-terminal domain KUY52_05555 PF03707 Bacterial signalling protein N terminal repeat KUY52_05555 PF00990 Diguanylate cyclase, GGDEF domain KUY52_05555 PF00563 EAL domain KUY52_05560 PF04452 RNA methyltransferase KUY52_05565 PF02219 Methylenetetrahydrofolate reductase KUY52_05570 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KUY52_05570 PF05221 S-adenosyl-L-homocysteine hydrolase KUY52_05585 PF09317 Domain of unknown function (DUF1974) KUY52_05585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_05585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_05590 PF04055 Radical SAM superfamily KUY52_05595 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_05595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUY52_05605 PF07690 Major Facilitator Superfamily KUY52_05615 PF00557 Metallopeptidase family M24 KUY52_05620 PF00318 Ribosomal protein S2 KUY52_05625 PF00889 Elongation factor TS KUY52_05635 PF12833 Helix-turn-helix domain KUY52_05655 PF03330 Lytic transglycolase KUY52_05655 PF05036 Sporulation related domain KUY52_05660 PF13406 Transglycosylase SLT domain KUY52_05665 PF01098 Cell cycle protein KUY52_05675 PF14489 QueF-like protein KUY52_05675 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KUY52_05680 PF01061 ABC-2 type transporter KUY52_05685 PF00005 ABC transporter KUY52_05715 PF00464 Serine hydroxymethyltransferase KUY52_05720 PF02321 Outer membrane efflux protein KUY52_05725 PF00873 AcrB/AcrD/AcrF family KUY52_05730 PF13533 Biotin-lipoyl like KUY52_05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_05735 PF03466 LysR substrate binding domain KUY52_05755 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_05760 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_05765 PF00005 ABC transporter KUY52_05770 PF00893 Small Multidrug Resistance protein KUY52_05775 PF00037 4Fe-4S binding domain KUY52_05780 PF01136 Peptidase family U32 KUY52_05780 PF16325 Peptidase family U32 C-terminal domain KUY52_05785 PF00155 Aminotransferase class I and II KUY52_05785 PF00392 Bacterial regulatory proteins, gntR family KUY52_05790 PF02567 Phenazine biosynthesis-like protein KUY52_05795 PF00970 Oxidoreductase FAD-binding domain KUY52_05795 PF00175 Oxidoreductase NAD-binding domain KUY52_05800 PF01980 tRNA-methyltransferase O KUY52_05800 PF18389 TrmO C-terminal domain KUY52_05810 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KUY52_05810 PF00437 Type II/IV secretion system protein KUY52_05820 PF00072 Response regulator receiver domain KUY52_05820 PF00486 Transcriptional regulatory protein, C terminal KUY52_05825 PF08521 Two-component sensor kinase N-terminal KUY52_05825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_05825 PF00512 His Kinase A (phospho-acceptor) domain KUY52_05835 PF00293 NUDIX domain KUY52_05845 PF00905 Penicillin binding protein transpeptidase domain KUY52_05845 PF00912 Transglycosylase KUY52_05845 PF14814 Bifunctional transglycosylase second domain KUY52_05850 PF01513 ATP-NAD kinase KUY52_05855 PF07023 Protein of unknown function (DUF1315) KUY52_05860 PF00591 Glycosyl transferase family, a/b domain KUY52_05860 PF02885 Glycosyl transferase family, helical bundle domain KUY52_05865 PF00375 Sodium:dicarboxylate symporter family KUY52_05870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_05870 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_05870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_05875 PF00756 Putative esterase KUY52_05880 PF01842 ACT domain KUY52_05880 PF01817 Chorismate mutase type II KUY52_05880 PF00800 Prephenate dehydratase KUY52_05885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KUY52_05895 PF01546 Peptidase family M20/M25/M40 KUY52_05895 PF07687 Peptidase dimerisation domain KUY52_05900 PF12706 Beta-lactamase superfamily domain KUY52_05910 PF03883 Peroxide stress protein YaaA KUY52_05920 PF05690 Thiazole biosynthesis protein ThiG KUY52_05930 PF04241 Protein of unknown function (DUF423) KUY52_05935 PF04542 Sigma-70 region 2 KUY52_05935 PF00140 Sigma-70 factor, region 1.2 KUY52_05935 PF04545 Sigma-70, region 4 KUY52_05945 PF00313 'Cold-shock' DNA-binding domain KUY52_05950 PF00270 DEAD/DEAH box helicase KUY52_05950 PF00271 Helicase conserved C-terminal domain KUY52_05960 PF00881 Nitroreductase family KUY52_05965 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KUY52_05965 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KUY52_05985 PF01180 Dihydroorotate dehydrogenase KUY52_05990 PF02674 Colicin V production protein KUY52_05995 PF00156 Phosphoribosyl transferase domain KUY52_06010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUY52_06010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUY52_06015 PF01435 Peptidase family M48 KUY52_06020 PF09424 Yqey-like protein KUY52_06025 PF01165 Ribosomal protein S21 KUY52_06030 PF00814 Glycoprotease family KUY52_06050 PF00069 Protein kinase domain KUY52_06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_06075 PF03466 LysR substrate binding domain KUY52_06080 PF00202 Aminotransferase class-III KUY52_06085 PF00171 Aldehyde dehydrogenase family KUY52_06090 PF00324 Amino acid permease KUY52_06120 PF04076 Bacterial OB fold (BOF) protein KUY52_06145 PF00561 alpha/beta hydrolase fold KUY52_06150 PF03616 Sodium/glutamate symporter KUY52_06160 PF00392 Bacterial regulatory proteins, gntR family KUY52_06160 PF07729 FCD domain KUY52_06210 PF08946 Osmosensory transporter coiled coil KUY52_06210 PF00083 Sugar (and other) transporter KUY52_06230 PF00155 Aminotransferase class I and II KUY52_06235 PF06826 Predicted Permease Membrane Region KUY52_06235 PF02080 TrkA-C domain KUY52_06245 PF04403 Paraquat-inducible protein A KUY52_06250 PF02470 MlaD protein KUY52_06260 PF01177 Asp/Glu/Hydantoin racemase KUY52_06265 PF00892 EamA-like transporter family KUY52_06270 PF07995 Glucose / Sorbosone dehydrogenase KUY52_06290 PF00375 Sodium:dicarboxylate symporter family KUY52_06300 PF16123 Hydroxyacylglutathione hydrolase C-terminus KUY52_06300 PF00753 Metallo-beta-lactamase superfamily KUY52_06305 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_06310 PF00005 ABC transporter KUY52_06310 PF09383 NIL domain KUY52_06315 PF03180 NLPA lipoprotein KUY52_06320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KUY52_06320 PF02843 Phosphoribosylglycinamide synthetase, C domain KUY52_06320 PF02844 Phosphoribosylglycinamide synthetase, N domain KUY52_06325 PF02142 MGS-like domain KUY52_06325 PF01808 AICARFT/IMPCHase bienzyme KUY52_06330 PF02954 Bacterial regulatory protein, Fis family KUY52_06350 PF01134 Glucose inhibited division protein A KUY52_06350 PF13932 GidA associated domain KUY52_06360 PF14403 Circularly permuted ATP-grasp type 2 KUY52_06370 PF08379 Bacterial transglutaminase-like N-terminal region KUY52_06370 PF01841 Transglutaminase-like superfamily KUY52_06380 PF00842 Alanine racemase, C-terminal domain KUY52_06380 PF01168 Alanine racemase, N-terminal domain KUY52_06385 PF00772 DnaB-like helicase N terminal domain KUY52_06385 PF03796 DnaB-like helicase C terminal domain KUY52_06390 PF03948 Ribosomal protein L9, C-terminal domain KUY52_06390 PF01281 Ribosomal protein L9, N-terminal domain KUY52_06395 PF01084 Ribosomal protein S18 KUY52_06400 PF01250 Ribosomal protein S6 KUY52_06405 PF01040 UbiA prenyltransferase family KUY52_06410 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KUY52_06415 PF00510 Cytochrome c oxidase subunit III KUY52_06420 PF00115 Cytochrome C and Quinol oxidase polypeptide I KUY52_06425 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KUY52_06425 PF06481 COX Aromatic Rich Motif KUY52_06435 PF00391 PEP-utilising enzyme, mobile domain KUY52_06435 PF02896 PEP-utilising enzyme, TIM barrel domain KUY52_06435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KUY52_06440 PF03618 Kinase/pyrophosphorylase KUY52_06450 PF14883 Hypothetical glycosyl hydrolase family 13 KUY52_06450 PF01522 Polysaccharide deacetylase KUY52_06455 PF00535 Glycosyl transferase family 2 KUY52_06460 PF13994 PgaD-like protein KUY52_06470 PF00296 Luciferase-like monooxygenase KUY52_06485 PF03466 LysR substrate binding domain KUY52_06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_06495 PF03462 PCRF domain KUY52_06495 PF00472 RF-1 domain KUY52_06500 PF13847 Methyltransferase domain KUY52_06500 PF17827 PrmC N-terminal domain KUY52_06505 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_06510 PF09084 NMT1/THI5 like KUY52_06515 PF12833 Helix-turn-helix domain KUY52_06520 PF00106 short chain dehydrogenase KUY52_06525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_06525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_06525 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_06530 PF00501 AMP-binding enzyme KUY52_06530 PF13193 AMP-binding enzyme C-terminal domain KUY52_06535 PF01613 Flavin reductase like domain KUY52_06540 PF00899 ThiF family KUY52_06545 PF03109 ABC1 family KUY52_06560 PF03814 Potassium-transporting ATPase A subunit KUY52_06570 PF02669 K+-transporting ATPase, c chain KUY52_06575 PF13493 Domain of unknown function (DUF4118) KUY52_06575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_06575 PF00512 His Kinase A (phospho-acceptor) domain KUY52_06575 PF02702 Osmosensitive K+ channel His kinase sensor domain KUY52_06580 PF00072 Response regulator receiver domain KUY52_06580 PF00486 Transcriptional regulatory protein, C terminal KUY52_06585 PF00120 Glutamine synthetase, catalytic domain KUY52_06595 PF03232 Ubiquinone biosynthesis protein COQ7 KUY52_06600 PF07690 Major Facilitator Superfamily KUY52_06605 PF17243 POTRA domain TamA domain 1 KUY52_06605 PF07244 Surface antigen variable number repeat KUY52_06605 PF01103 Surface antigen KUY52_06620 PF11791 Aconitate B N-terminal domain KUY52_06620 PF06434 Aconitate hydratase 2 N-terminus KUY52_06620 PF00330 Aconitase family (aconitate hydratase) KUY52_06630 PF00520 Ion transport protein KUY52_06630 PF00027 Cyclic nucleotide-binding domain KUY52_06635 PF07690 Major Facilitator Superfamily KUY52_06650 PF03466 LysR substrate binding domain KUY52_06650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_06655 PF04284 Protein of unknown function (DUF441) KUY52_06665 PF01479 S4 domain KUY52_06665 PF00849 RNA pseudouridylate synthase KUY52_06680 PF00849 RNA pseudouridylate synthase KUY52_06680 PF01479 S4 domain KUY52_06685 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KUY52_06690 PF08676 MutL C terminal dimerisation domain KUY52_06690 PF01119 DNA mismatch repair protein, C-terminal domain KUY52_06700 PF17209 Hfq protein KUY52_06710 PF00881 Nitroreductase family KUY52_06720 PF00149 Calcineurin-like phosphoesterase KUY52_06725 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KUY52_06730 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUY52_06730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KUY52_06735 PF00117 Glutamine amidotransferase class-I KUY52_06735 PF00958 GMP synthase C terminal domain KUY52_06735 PF02540 NAD synthase KUY52_06740 PF05985 Ethanolamine ammonia-lyase light chain (EutC) KUY52_06745 PF06751 Ethanolamine ammonia lyase large subunit (EutB) KUY52_06750 PF13520 Amino acid permease KUY52_06755 PF00171 Aldehyde dehydrogenase family KUY52_06770 PF00465 Iron-containing alcohol dehydrogenase KUY52_06775 PF14493 Helix-turn-helix domain KUY52_06775 PF05970 PIF1-like helicase KUY52_06785 PF06445 GyrI-like small molecule binding domain KUY52_06790 PF02110 Hydroxyethylthiazole kinase family KUY52_06805 PF01433 Peptidase family M1 domain KUY52_06805 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KUY52_06805 PF11940 Domain of unknown function (DUF3458) Ig-like fold KUY52_06815 PF00106 short chain dehydrogenase KUY52_06825 PF01817 Chorismate mutase type II KUY52_06830 PF01037 Lrp/AsnC ligand binding domain KUY52_06840 PF00440 Bacterial regulatory proteins, tetR family KUY52_06845 PF00593 TonB dependent receptor KUY52_06845 PF07715 TonB-dependent Receptor Plug Domain KUY52_06850 PF00924 Mechanosensitive ion channel KUY52_06885 PF00593 TonB dependent receptor KUY52_06885 PF07715 TonB-dependent Receptor Plug Domain KUY52_06905 PF12848 ABC transporter KUY52_06905 PF00005 ABC transporter KUY52_06910 PF00582 Universal stress protein family KUY52_06935 PF00690 Cation transporter/ATPase, N-terminus KUY52_06935 PF00689 Cation transporting ATPase, C-terminus KUY52_06940 PF02308 MgtC family KUY52_06945 PF03594 Benzoate membrane transport protein KUY52_06950 PF01037 Lrp/AsnC ligand binding domain KUY52_06955 PF01810 LysE type translocator KUY52_06960 PF00923 Transaldolase/Fructose-6-phosphate aldolase KUY52_06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_06965 PF03466 LysR substrate binding domain KUY52_06975 PF00108 Thiolase, N-terminal domain KUY52_06975 PF02803 Thiolase, C-terminal domain KUY52_06985 PF01575 MaoC like domain KUY52_06990 PF00144 Beta-lactamase KUY52_07000 PF07690 Major Facilitator Superfamily KUY52_07005 PF12169 DNA polymerase III subunits gamma and tau domain III KUY52_07005 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KUY52_07005 PF12170 DNA polymerase III tau subunit V interacting with alpha KUY52_07010 PF05506 Domain of unknown function (DUF756) KUY52_07010 PF04185 Phosphoesterase family KUY52_07015 PF03061 Thioesterase superfamily KUY52_07020 PF00465 Iron-containing alcohol dehydrogenase KUY52_07030 PF01451 Low molecular weight phosphotyrosine protein phosphatase KUY52_07035 PF01565 FAD binding domain KUY52_07035 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KUY52_07050 PF01645 Conserved region in glutamate synthase KUY52_07345 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system KUY52_07435 PF12832 MFS_1 like family KUY52_07445 PF02785 Biotin carboxylase C-terminal domain KUY52_07445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUY52_07445 PF00289 Biotin carboxylase, N-terminal domain KUY52_07450 PF00364 Biotin-requiring enzyme KUY52_07455 PF01220 Dehydroquinase class II KUY52_07460 PF13438 Domain of unknown function (DUF4113) KUY52_07460 PF11799 impB/mucB/samB family C-terminal domain KUY52_07460 PF00817 impB/mucB/samB family KUY52_07470 PF00005 ABC transporter KUY52_07475 PF00072 Response regulator receiver domain KUY52_07475 PF00486 Transcriptional regulatory protein, C terminal KUY52_07485 PF13806 Rieske-like [2Fe-2S] domain KUY52_07485 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_07485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KUY52_07485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KUY52_07485 PF04324 BFD-like [2Fe-2S] binding domain KUY52_07485 PF18267 Rubredoxin NAD+ reductase C-terminal domain KUY52_07490 PF04324 BFD-like [2Fe-2S] binding domain KUY52_07490 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KUY52_07490 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KUY52_07490 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_07490 PF18267 Rubredoxin NAD+ reductase C-terminal domain KUY52_07495 PF04324 BFD-like [2Fe-2S] binding domain KUY52_07495 PF01568 Molydopterin dinucleotide binding domain KUY52_07495 PF00384 Molybdopterin oxidoreductase KUY52_07495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KUY52_07500 PF12804 MobA-like NTP transferase domain KUY52_07505 PF01568 Molydopterin dinucleotide binding domain KUY52_07505 PF00384 Molybdopterin oxidoreductase KUY52_07505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KUY52_07510 PF06463 Molybdenum Cofactor Synthesis C KUY52_07510 PF04055 Radical SAM superfamily KUY52_07520 PF02391 MoaE protein KUY52_07525 PF01967 MoaC family KUY52_07525 PF00994 Probable molybdopterin binding domain KUY52_07530 PF00994 Probable molybdopterin binding domain KUY52_07530 PF03454 MoeA C-terminal region (domain IV) KUY52_07530 PF03453 MoeA N-terminal region (domain I and II) KUY52_07535 PF01638 HxlR-like helix-turn-helix KUY52_07540 PF00155 Aminotransferase class I and II KUY52_07540 PF00392 Bacterial regulatory proteins, gntR family KUY52_07545 PF00892 EamA-like transporter family KUY52_07565 PF02635 DsrE/DsrF-like family KUY52_07570 PF16363 GDP-mannose 4,6 dehydratase KUY52_07575 PF10415 Fumarase C C-terminus KUY52_07575 PF00206 Lyase KUY52_07595 PF01266 FAD dependent oxidoreductase KUY52_07605 PF02542 YgbB family KUY52_07615 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KUY52_07615 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KUY52_07625 PF13610 DDE domain KUY52_07635 PF07995 Glucose / Sorbosone dehydrogenase KUY52_07645 PF03707 Bacterial signalling protein N terminal repeat KUY52_07645 PF00563 EAL domain KUY52_07645 PF00990 Diguanylate cyclase, GGDEF domain KUY52_07665 PF02378 Phosphotransferase system, EIIC KUY52_07665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KUY52_07670 PF00294 pfkB family carbohydrate kinase KUY52_07675 PF00381 PTS HPr component phosphorylation site KUY52_07675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KUY52_07675 PF02896 PEP-utilising enzyme, TIM barrel domain KUY52_07675 PF00391 PEP-utilising enzyme, mobile domain KUY52_07675 PF05524 PEP-utilising enzyme, N-terminal KUY52_07700 PF05525 Branched-chain amino acid transport protein KUY52_07705 PF00557 Metallopeptidase family M24 KUY52_07710 PF03466 LysR substrate binding domain KUY52_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_07720 PF00462 Glutaredoxin KUY52_07725 PF00202 Aminotransferase class-III KUY52_07730 PF00571 CBS domain KUY52_07730 PF00478 IMP dehydrogenase / GMP reductase domain KUY52_07755 PF02881 SRP54-type protein, helical bundle domain KUY52_07755 PF00448 SRP54-type protein, GTPase domain KUY52_07765 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KUY52_07780 PF08173 Membrane bound YbgT-like protein KUY52_07785 PF02322 Cytochrome bd terminal oxidase subunit II KUY52_07790 PF01654 Cytochrome bd terminal oxidase subunit I KUY52_07800 PF07290 Protein of unknown function (DUF1449) KUY52_07810 PF00294 pfkB family carbohydrate kinase KUY52_07815 PF07715 TonB-dependent Receptor Plug Domain KUY52_07815 PF00593 TonB dependent receptor KUY52_07820 PF08367 Peptidase M16C associated KUY52_07820 PF00675 Insulinase (Peptidase family M16) KUY52_07820 PF05193 Peptidase M16 inactive domain KUY52_07825 PF02253 Phospholipase A1 KUY52_07830 PF02386 Cation transport protein KUY52_07835 PF02254 TrkA-N domain KUY52_07835 PF02080 TrkA-C domain KUY52_07840 PF00585 C-terminal regulatory domain of Threonine dehydratase KUY52_07840 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_07845 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KUY52_07860 PF02774 Semialdehyde dehydrogenase, dimerisation domain KUY52_07860 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUY52_07870 PF02617 ATP-dependent Clp protease adaptor protein ClpS KUY52_07875 PF10431 C-terminal, D2-small domain, of ClpB protein KUY52_07875 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_07875 PF07724 AAA domain (Cdc48 subfamily) KUY52_07875 PF17871 AAA lid domain KUY52_07875 PF02861 Clp amino terminal domain, pathogenicity island component KUY52_07880 PF02694 Uncharacterised BCR, YnfA/UPF0060 family KUY52_07885 PF00793 DAHP synthetase I family KUY52_07900 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_07900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUY52_07930 PF00117 Glutamine amidotransferase class-I KUY52_07930 PF06418 CTP synthase N-terminus KUY52_07935 PF00793 DAHP synthetase I family KUY52_07940 PF00113 Enolase, C-terminal TIM barrel domain KUY52_07940 PF03952 Enolase, N-terminal domain KUY52_07945 PF04239 Protein of unknown function (DUF421) KUY52_07950 PF04977 Septum formation initiator KUY52_07955 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KUY52_07960 PF01144 Coenzyme A transferase KUY52_07965 PF01144 Coenzyme A transferase KUY52_07970 PF02803 Thiolase, C-terminal domain KUY52_07970 PF00108 Thiolase, N-terminal domain KUY52_07975 PF10397 Adenylosuccinate lyase C-terminus KUY52_07975 PF00206 Lyase KUY52_07980 PF00561 alpha/beta hydrolase fold KUY52_07985 PF07690 Major Facilitator Superfamily KUY52_07990 PF02627 Carboxymuconolactone decarboxylase family KUY52_07995 PF00775 Dioxygenase KUY52_07995 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal KUY52_08000 PF00775 Dioxygenase KUY52_08005 PF01487 Type I 3-dehydroquinase KUY52_08010 PF05048 Periplasmic copper-binding protein (NosD) KUY52_08015 PF04966 Carbohydrate-selective porin, OprB family KUY52_08020 PF01011 PQQ enzyme repeat KUY52_08020 PF13360 PQQ-like domain KUY52_08030 PF04143 Sulphur transport KUY52_08040 PF00753 Metallo-beta-lactamase superfamily KUY52_08045 PF01614 Bacterial transcriptional regulator KUY52_08045 PF09339 IclR helix-turn-helix domain KUY52_08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_08050 PF03466 LysR substrate binding domain KUY52_08055 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_08055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_08055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_08070 PF00106 short chain dehydrogenase KUY52_08080 PF07690 Major Facilitator Superfamily KUY52_08090 PF01425 Amidase KUY52_08095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUY52_08110 PF00355 Rieske [2Fe-2S] domain KUY52_08110 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUY52_08125 PF00175 Oxidoreductase NAD-binding domain KUY52_08125 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_08130 PF01613 Flavin reductase like domain KUY52_08135 PF12833 Helix-turn-helix domain KUY52_08135 PF02311 AraC-like ligand binding domain KUY52_08140 PF02727 Copper amine oxidase, N2 domain KUY52_08140 PF01179 Copper amine oxidase, enzyme domain KUY52_08140 PF07833 Copper amine oxidase N-terminal domain KUY52_08140 PF02728 Copper amine oxidase, N3 domain KUY52_08150 PF00171 Aldehyde dehydrogenase family KUY52_08155 PF01804 Penicillin amidase KUY52_08160 PF12146 Serine aminopeptidase, S33 KUY52_08165 PF02803 Thiolase, C-terminal domain KUY52_08165 PF00108 Thiolase, N-terminal domain KUY52_08170 PF01144 Coenzyme A transferase KUY52_08175 PF01144 Coenzyme A transferase KUY52_08180 PF04444 Catechol dioxygenase N terminus KUY52_08180 PF00775 Dioxygenase KUY52_08185 PF02426 Muconolactone delta-isomerase KUY52_08190 PF13378 Enolase C-terminal domain-like KUY52_08190 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KUY52_08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_08195 PF03466 LysR substrate binding domain KUY52_08205 PF07729 FCD domain KUY52_08205 PF00392 Bacterial regulatory proteins, gntR family KUY52_08210 PF00920 Dehydratase family KUY52_08215 PF07690 Major Facilitator Superfamily KUY52_08225 PF00171 Aldehyde dehydrogenase family KUY52_08245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_08245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_08245 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_08255 PF02954 Bacterial regulatory protein, Fis family KUY52_08255 PF06506 Propionate catabolism activator KUY52_08255 PF00158 Sigma-54 interaction domain KUY52_08260 PF00501 AMP-binding enzyme KUY52_08260 PF13193 AMP-binding enzyme C-terminal domain KUY52_08265 PF04341 Protein of unknown function, DUF485 KUY52_08270 PF00474 Sodium:solute symporter family KUY52_08275 PF00107 Zinc-binding dehydrogenase KUY52_08275 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_08280 PF00171 Aldehyde dehydrogenase family KUY52_08290 PF00561 alpha/beta hydrolase fold KUY52_08295 PF00199 Catalase KUY52_08295 PF06628 Catalase-related immune-responsive KUY52_08310 PF07859 alpha/beta hydrolase fold KUY52_08315 PF01047 MarR family KUY52_08320 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_08320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUY52_08325 PF00106 short chain dehydrogenase KUY52_08330 PF01872 RibD C-terminal domain KUY52_08335 PF09278 MerR, DNA binding KUY52_08335 PF00376 MerR family regulatory protein KUY52_08345 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_08355 PF12706 Beta-lactamase superfamily domain KUY52_08360 PF00440 Bacterial regulatory proteins, tetR family KUY52_08360 PF08359 YsiA-like protein, C-terminal region KUY52_08370 PF00857 Isochorismatase family KUY52_08375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_08375 PF03466 LysR substrate binding domain KUY52_08380 PF07995 Glucose / Sorbosone dehydrogenase KUY52_08385 PF00999 Sodium/hydrogen exchanger family KUY52_08385 PF02254 TrkA-N domain KUY52_08395 PF01546 Peptidase family M20/M25/M40 KUY52_08395 PF07687 Peptidase dimerisation domain KUY52_08405 PF08479 POTRA domain, ShlB-type KUY52_08405 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB KUY52_08405 PF17287 POTRA domain KUY52_08410 PF13332 Hemagglutinin repeat KUY52_08410 PF05860 haemagglutination activity domain KUY52_08410 PF04829 Pre-toxin domain with VENN motif KUY52_08410 PF13018 Extended Signal Peptide of Type V secretion system KUY52_08425 PF07690 Major Facilitator Superfamily KUY52_08430 PF04909 Amidohydrolase KUY52_08440 PF00392 Bacterial regulatory proteins, gntR family KUY52_08440 PF07702 UTRA domain KUY52_08445 PF08450 SMP-30/Gluconolactonase/LRE-like region KUY52_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_08455 PF03466 LysR substrate binding domain KUY52_08475 PF07690 Major Facilitator Superfamily KUY52_08480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KUY52_08480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KUY52_08480 PF01842 ACT domain KUY52_08485 PF03737 Aldolase/RraA KUY52_08505 PF00529 HlyD membrane-fusion protein of T1SS KUY52_08505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_08520 PF00171 Aldehyde dehydrogenase family KUY52_08525 PF00920 Dehydratase family KUY52_08535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_08535 PF03466 LysR substrate binding domain KUY52_08540 PF01370 NAD dependent epimerase/dehydratase family KUY52_08545 PF07690 Major Facilitator Superfamily KUY52_08550 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KUY52_08550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KUY52_08555 PF12833 Helix-turn-helix domain KUY52_08555 PF06719 AraC-type transcriptional regulator N-terminus KUY52_08570 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_08570 PF00107 Zinc-binding dehydrogenase KUY52_08580 PF01032 FecCD transport family KUY52_08585 PF00005 ABC transporter KUY52_08605 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KUY52_08605 PF14572 Phosphoribosyl synthetase-associated domain KUY52_08610 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KUY52_08680 PF00196 Bacterial regulatory proteins, luxR family KUY52_08685 PF01425 Amidase KUY52_08690 PF13533 Biotin-lipoyl like KUY52_08695 PF07690 Major Facilitator Superfamily KUY52_08720 PF01975 Survival protein SurE KUY52_08730 PF13291 ACT domain KUY52_08730 PF04607 Region found in RelA / SpoT proteins KUY52_08730 PF02824 TGS domain KUY52_08780 PF12146 Serine aminopeptidase, S33 KUY52_08785 PF12833 Helix-turn-helix domain KUY52_08785 PF02311 AraC-like ligand binding domain KUY52_08795 PF00512 His Kinase A (phospho-acceptor) domain KUY52_08795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_08795 PF00672 HAMP domain KUY52_08795 PF16527 Two-component sensor protein CpxA, periplasmic domain KUY52_08800 PF00486 Transcriptional regulatory protein, C terminal KUY52_08800 PF00072 Response regulator receiver domain KUY52_08805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_08805 PF00529 HlyD membrane-fusion protein of T1SS KUY52_08810 PF00873 AcrB/AcrD/AcrF family KUY52_08815 PF02321 Outer membrane efflux protein KUY52_08820 PF12146 Serine aminopeptidase, S33 KUY52_08825 PF00743 Flavin-binding monooxygenase-like KUY52_08830 PF01593 Flavin containing amine oxidoreductase KUY52_08845 PF01266 FAD dependent oxidoreductase KUY52_08865 PF16970 Type-1 fimbrial protein, A KUY52_08875 PF02753 Pili assembly chaperone PapD, C-terminal domain KUY52_08875 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KUY52_08880 PF13953 PapC C-terminal domain KUY52_08880 PF00577 Outer membrane usher protein KUY52_08880 PF13954 PapC N-terminal domain KUY52_08885 PF00419 Fimbrial protein KUY52_08895 PF00107 Zinc-binding dehydrogenase KUY52_08895 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_08905 PF00199 Catalase KUY52_08920 PF13091 PLD-like domain KUY52_08935 PF01244 Membrane dipeptidase (Peptidase family M19) KUY52_08940 PF04055 Radical SAM superfamily KUY52_08940 PF13186 Iron-sulfur cluster-binding domain KUY52_08945 PF05402 Coenzyme PQQ synthesis protein D (PqqD) KUY52_08950 PF03070 TENA/THI-4/PQQC family KUY52_08955 PF12706 Beta-lactamase superfamily domain KUY52_08960 PF08042 PqqA family KUY52_08965 PF13089 Polyphosphate kinase N-terminal domain KUY52_08965 PF17941 Polyphosphate kinase C-terminal domain 1 KUY52_08965 PF13090 Polyphosphate kinase C-terminal domain 2 KUY52_08965 PF02503 Polyphosphate kinase middle domain KUY52_08970 PF00149 Calcineurin-like phosphoesterase KUY52_08980 PF00857 Isochorismatase family KUY52_08980 PF00550 Phosphopantetheine attachment site KUY52_08985 PF00106 short chain dehydrogenase KUY52_08990 PF03459 TOBE domain KUY52_08990 PF00005 ABC transporter KUY52_08995 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_09005 PF03459 TOBE domain KUY52_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_09010 PF00355 Rieske [2Fe-2S] domain KUY52_09010 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUY52_09015 PF00866 Ring hydroxylating beta subunit KUY52_09020 PF00970 Oxidoreductase FAD-binding domain KUY52_09020 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_09020 PF00175 Oxidoreductase NAD-binding domain KUY52_09025 PF12833 Helix-turn-helix domain KUY52_09025 PF14525 AraC-binding-like domain KUY52_09035 PF01613 Flavin reductase like domain KUY52_09050 PF01738 Dienelactone hydrolase family KUY52_09055 PF07690 Major Facilitator Superfamily KUY52_09060 PF12833 Helix-turn-helix domain KUY52_09060 PF06719 AraC-type transcriptional regulator N-terminus KUY52_09085 PF03466 LysR substrate binding domain KUY52_09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_09090 PF01144 Coenzyme A transferase KUY52_09095 PF01144 Coenzyme A transferase KUY52_09100 PF02667 Short chain fatty acid transporter KUY52_09105 PF00108 Thiolase, N-terminal domain KUY52_09105 PF02803 Thiolase, C-terminal domain KUY52_09110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_09110 PF03466 LysR substrate binding domain KUY52_09115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_09115 PF03466 LysR substrate binding domain KUY52_09130 PF10415 Fumarase C C-terminus KUY52_09130 PF00206 Lyase KUY52_09135 PF07715 TonB-dependent Receptor Plug Domain KUY52_09135 PF00593 TonB dependent receptor KUY52_09140 PF00083 Sugar (and other) transporter KUY52_09155 PF00005 ABC transporter KUY52_09160 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_09165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KUY52_09180 PF00392 Bacterial regulatory proteins, gntR family KUY52_09180 PF07702 UTRA domain KUY52_09190 PF02525 Flavodoxin-like fold KUY52_09195 PF01638 HxlR-like helix-turn-helix KUY52_09200 PF06445 GyrI-like small molecule binding domain KUY52_09200 PF12833 Helix-turn-helix domain KUY52_09215 PF01925 Sulfite exporter TauE/SafE KUY52_09220 PF04273 Putative phosphatase (DUF442) KUY52_09220 PF00753 Metallo-beta-lactamase superfamily KUY52_09225 PF04273 Putative phosphatase (DUF442) KUY52_09225 PF00753 Metallo-beta-lactamase superfamily KUY52_09230 PF02954 Bacterial regulatory protein, Fis family KUY52_09230 PF00072 Response regulator receiver domain KUY52_09230 PF00158 Sigma-54 interaction domain KUY52_09235 PF01062 Bestrophin, RFP-TM, chloride channel KUY52_09240 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_09240 PF00107 Zinc-binding dehydrogenase KUY52_09245 PF00106 short chain dehydrogenase KUY52_09250 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_09250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KUY52_09255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KUY52_09255 PF00364 Biotin-requiring enzyme KUY52_09255 PF02817 e3 binding domain KUY52_09260 PF02779 Transketolase, pyrimidine binding domain KUY52_09260 PF02780 Transketolase, C-terminal domain KUY52_09265 PF00676 Dehydrogenase E1 component KUY52_09270 PF04055 Radical SAM superfamily KUY52_09285 PF00990 Diguanylate cyclase, GGDEF domain KUY52_09285 PF08448 PAS fold KUY52_09290 PF01264 Chorismate synthase KUY52_09295 PF05175 Methyltransferase small domain KUY52_09300 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_09310 PF01434 Peptidase family M41 KUY52_09310 PF17862 AAA+ lid domain KUY52_09310 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_09320 PF05166 YcgL domain KUY52_09340 PF01612 3'-5' exonuclease KUY52_09340 PF00570 HRDC domain KUY52_09345 PF02132 RecR protein KUY52_09345 PF13662 Toprim domain KUY52_09350 PF02575 YbaB/EbfC DNA-binding family KUY52_09360 PF01053 Cys/Met metabolism PLP-dependent enzyme KUY52_09365 PF00561 alpha/beta hydrolase fold KUY52_09370 PF08241 Methyltransferase domain KUY52_09400 PF01230 HIT domain KUY52_09440 PF00005 ABC transporter KUY52_09445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_09455 PF02684 Lipid-A-disaccharide synthetase KUY52_09460 PF07715 TonB-dependent Receptor Plug Domain KUY52_09460 PF00593 TonB dependent receptor KUY52_09480 PF01925 Sulfite exporter TauE/SafE KUY52_09485 PF00793 DAHP synthetase I family KUY52_09490 PF02654 Cobalamin-5-phosphate synthase KUY52_09505 PF02277 Phosphoribosyltransferase KUY52_09510 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase KUY52_09520 PF13419 Haloacid dehalogenase-like hydrolase KUY52_09545 PF07715 TonB-dependent Receptor Plug Domain KUY52_09545 PF00593 TonB dependent receptor KUY52_09560 PF06276 Ferric iron reductase FhuF-like transporter KUY52_09560 PF04183 IucA / IucC family KUY52_09565 PF06276 Ferric iron reductase FhuF-like transporter KUY52_09565 PF04183 IucA / IucC family KUY52_09570 PF07690 Major Facilitator Superfamily KUY52_09575 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KUY52_09580 PF04183 IucA / IucC family KUY52_09580 PF06276 Ferric iron reductase FhuF-like transporter KUY52_09585 PF04073 Aminoacyl-tRNA editing domain KUY52_09595 PF03109 ABC1 family KUY52_09600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_09600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_09600 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_09605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_09605 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_09605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_09610 PF00487 Fatty acid desaturase KUY52_09615 PF12852 Cupin KUY52_09615 PF12833 Helix-turn-helix domain KUY52_09620 PF00639 PPIC-type PPIASE domain KUY52_09620 PF09312 SurA N-terminal domain KUY52_09625 PF00216 Bacterial DNA-binding protein KUY52_09640 PF02082 Transcriptional regulator KUY52_09645 PF00266 Aminotransferase class-V KUY52_09650 PF01592 NifU-like N terminal domain KUY52_09655 PF01521 Iron-sulphur cluster biosynthesis KUY52_09660 PF00226 DnaJ domain KUY52_09660 PF07743 HSCB C-terminal oligomerisation domain KUY52_09665 PF00012 Hsp70 protein KUY52_09670 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_09675 PF00211 Adenylate and Guanylate cyclase catalytic domain KUY52_09685 PF00271 Helicase conserved C-terminal domain KUY52_09685 PF02559 CarD-like/TRCF domain KUY52_09685 PF00270 DEAD/DEAH box helicase KUY52_09685 PF17757 UvrB interaction domain KUY52_09685 PF03461 TRCF domain KUY52_09705 PF03737 Aldolase/RraA KUY52_09710 PF13460 NAD(P)H-binding KUY52_09715 PF01649 Ribosomal protein S20 KUY52_09725 PF00459 Inositol monophosphatase family KUY52_09740 PF00005 ABC transporter KUY52_09740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUY52_09745 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_09750 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_09755 PF01432 Peptidase family M3 KUY52_09775 PF07715 TonB-dependent Receptor Plug Domain KUY52_09775 PF00593 TonB dependent receptor KUY52_09785 PF01618 MotA/TolQ/ExbB proton channel family KUY52_09790 PF02472 Biopolymer transport protein ExbD/TolR KUY52_09795 PF02472 Biopolymer transport protein ExbD/TolR KUY52_09805 PF01274 Malate synthase KUY52_09810 PF03969 AFG1-like ATPase KUY52_09820 PF00743 Flavin-binding monooxygenase-like KUY52_09830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KUY52_09840 PF00216 Bacterial DNA-binding protein KUY52_09845 PF00575 S1 RNA binding domain KUY52_09850 PF02224 Cytidylate kinase KUY52_09860 PF14437 MafB19-like deaminase KUY52_09870 PF03167 Uracil DNA glycosylase superfamily KUY52_09880 PF03934 Type II secretion system (T2SS), protein K KUY52_09885 PF07963 Prokaryotic N-terminal methylation motif KUY52_09885 PF11612 Type II secretion system (T2SS), protein J KUY52_09890 PF07963 Prokaryotic N-terminal methylation motif KUY52_09890 PF02501 Type II secretion system (T2SS), protein I KUY52_09905 PF01026 TatD related DNase KUY52_09915 PF09115 DNA polymerase III, delta subunit, C terminal KUY52_09920 PF02348 Cytidylyltransferase KUY52_09925 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KUY52_09930 PF00664 ABC transporter transmembrane region KUY52_09930 PF00005 ABC transporter KUY52_09940 PF01618 MotA/TolQ/ExbB proton channel family KUY52_09945 PF02195 ParB-like nuclease domain KUY52_09945 PF17762 HTH domain found in ParB protein KUY52_09950 PF13614 AAA domain KUY52_09955 PF02527 rRNA small subunit methyltransferase G KUY52_09960 PF00483 Nucleotidyl transferase KUY52_09965 PF01636 Phosphotransferase enzyme family KUY52_09970 PF04453 LPS transport system D KUY52_09970 PF03968 OstA-like protein KUY52_09975 PF09312 SurA N-terminal domain KUY52_09975 PF00639 PPIC-type PPIASE domain KUY52_09980 PF01116 Fructose-bisphosphate aldolase class-II KUY52_09990 PF00162 Phosphoglycerate kinase KUY52_10000 PF02545 Maf-like protein KUY52_10005 PF08007 Cupin superfamily protein KUY52_10020 PF00375 Sodium:dicarboxylate symporter family KUY52_10025 PF06912 Protein of unknown function (DUF1275) KUY52_10030 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) KUY52_10035 PF00664 ABC transporter transmembrane region KUY52_10035 PF00005 ABC transporter KUY52_10045 PF12833 Helix-turn-helix domain KUY52_10045 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KUY52_10050 PF01597 Glycine cleavage H-protein KUY52_10055 PF02146 Sir2 family KUY52_10060 PF00474 Sodium:solute symporter family KUY52_10065 PF01037 Lrp/AsnC ligand binding domain KUY52_10070 PF00171 Aldehyde dehydrogenase family KUY52_10070 PF01619 Proline dehydrogenase KUY52_10070 PF14850 DNA-binding domain of Proline dehydrogenase KUY52_10070 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KUY52_10075 PF04229 GrpB protein KUY52_10080 PF05958 tRNA (Uracil-5-)-methyltransferase KUY52_10090 PF09992 Phosphodiester glycosidase KUY52_10100 PF04264 YceI-like domain KUY52_10110 PF02779 Transketolase, pyrimidine binding domain KUY52_10110 PF02780 Transketolase, C-terminal domain KUY52_10110 PF00456 Transketolase, thiamine diphosphate binding domain KUY52_10115 PF00438 S-adenosylmethionine synthetase, N-terminal domain KUY52_10115 PF02773 S-adenosylmethionine synthetase, C-terminal domain KUY52_10115 PF02772 S-adenosylmethionine synthetase, central domain KUY52_10135 PF00905 Penicillin binding protein transpeptidase domain KUY52_10150 PF02075 Crossover junction endodeoxyribonuclease RuvC KUY52_10155 PF01256 Carbohydrate kinase KUY52_10155 PF03853 YjeF-related protein N-terminus KUY52_10160 PF08331 Domain of unknown function (DUF1730) KUY52_10165 PF06968 Biotin and Thiamin Synthesis associated domain KUY52_10165 PF04055 Radical SAM superfamily KUY52_10180 PF16970 Type-1 fimbrial protein, A KUY52_10185 PF02753 Pili assembly chaperone PapD, C-terminal domain KUY52_10185 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain KUY52_10190 PF13953 PapC C-terminal domain KUY52_10190 PF13954 PapC N-terminal domain KUY52_10190 PF00577 Outer membrane usher protein KUY52_10210 PF00892 EamA-like transporter family KUY52_10220 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KUY52_10230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_10230 PF03466 LysR substrate binding domain KUY52_10260 PF00440 Bacterial regulatory proteins, tetR family KUY52_10270 PF01709 Transcriptional regulator KUY52_10275 PF01037 Lrp/AsnC ligand binding domain KUY52_10285 PF00005 ABC transporter KUY52_10290 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_10295 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_10310 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUY52_10310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_10320 PF00296 Luciferase-like monooxygenase KUY52_10325 PF03180 NLPA lipoprotein KUY52_10330 PF03180 NLPA lipoprotein KUY52_10335 PF00005 ABC transporter KUY52_10335 PF09383 NIL domain KUY52_10340 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_10345 PF01926 50S ribosome-binding GTPase KUY52_10345 PF06071 Protein of unknown function (DUF933) KUY52_10370 PF03591 AzlC protein KUY52_10375 PF05437 Branched-chain amino acid transport protein (AzlD) KUY52_10385 PF02222 ATP-grasp domain KUY52_10390 PF01909 Nucleotidyltransferase domain KUY52_10390 PF08335 GlnD PII-uridylyltransferase KUY52_10390 PF01966 HD domain KUY52_10395 PF00155 Aminotransferase class I and II KUY52_10405 PF12833 Helix-turn-helix domain KUY52_10405 PF12852 Cupin KUY52_10410 PF00255 Glutathione peroxidase KUY52_10415 PF01641 SelR domain KUY52_10420 PF00155 Aminotransferase class I and II KUY52_10425 PF00375 Sodium:dicarboxylate symporter family KUY52_10430 PF00710 Asparaginase, N-terminal KUY52_10430 PF17763 Glutaminase/Asparaginase C-terminal domain KUY52_10435 PF07733 Bacterial DNA polymerase III alpha NTPase domain KUY52_10435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KUY52_10435 PF02811 PHP domain KUY52_10435 PF01336 OB-fold nucleic acid binding domain KUY52_10435 PF14579 Helix-hairpin-helix motif KUY52_10440 PF00588 SpoU rRNA Methylase family KUY52_10445 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_10460 PF13192 Thioredoxin domain KUY52_10460 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_10475 PF03466 LysR substrate binding domain KUY52_10480 PF01758 Sodium Bile acid symporter family KUY52_10485 PF01022 Bacterial regulatory protein, arsR family KUY52_10490 PF03960 ArsC family KUY52_10500 PF01979 Amidohydrolase family KUY52_10500 PF13382 Adenine deaminase C-terminal domain KUY52_10510 PF13610 DDE domain KUY52_10520 PF01740 STAS domain KUY52_10520 PF00916 Sulfate permease family KUY52_10525 PF05922 Peptidase inhibitor I9 KUY52_10525 PF00082 Subtilase family KUY52_10535 PF00324 Amino acid permease KUY52_10540 PF00266 Aminotransferase class-V KUY52_10545 PF01037 Lrp/AsnC ligand binding domain KUY52_10570 PF13419 Haloacid dehalogenase-like hydrolase KUY52_10575 PF01479 S4 domain KUY52_10580 PF00154 recA bacterial DNA recombination protein KUY52_10585 PF02631 RecX family KUY52_10600 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KUY52_10600 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_10605 PF07977 FabA-like domain KUY52_10610 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_10610 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KUY52_10620 PF01103 Surface antigen KUY52_10620 PF07244 Surface antigen variable number repeat KUY52_10625 PF13180 PDZ domain KUY52_10625 PF17820 PDZ domain KUY52_10625 PF02163 Peptidase family M50 KUY52_10630 PF13288 DXP reductoisomerase C-terminal domain KUY52_10630 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KUY52_10630 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KUY52_10640 PF01255 Putative undecaprenyl diphosphate synthase KUY52_10645 PF01765 Ribosome recycling factor KUY52_10650 PF00696 Amino acid kinase family KUY52_10655 PF00919 Uncharacterized protein family UPF0004 KUY52_10655 PF18693 TRAM domain KUY52_10655 PF04055 Radical SAM superfamily KUY52_10660 PF00989 PAS fold KUY52_10660 PF00512 His Kinase A (phospho-acceptor) domain KUY52_10660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_10665 PF00158 Sigma-54 interaction domain KUY52_10665 PF00072 Response regulator receiver domain KUY52_10665 PF02954 Bacterial regulatory protein, Fis family KUY52_10675 PF13610 DDE domain KUY52_10705 PF13610 DDE domain KUY52_10715 PF00083 Sugar (and other) transporter KUY52_10720 PF00296 Luciferase-like monooxygenase KUY52_10725 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUY52_10725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_10725 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_10735 PF01654 Cytochrome bd terminal oxidase subunit I KUY52_10740 PF02322 Cytochrome bd terminal oxidase subunit II KUY52_10750 PF00392 Bacterial regulatory proteins, gntR family KUY52_10750 PF00155 Aminotransferase class I and II KUY52_10755 PF03466 LysR substrate binding domain KUY52_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_10770 PF00698 Acyl transferase domain KUY52_10775 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG KUY52_10785 PF01039 Carboxyl transferase domain KUY52_10790 PF06857 Malonate decarboxylase delta subunit (MdcD) KUY52_10795 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase KUY52_10800 PF16957 Malonate decarboxylase, alpha subunit, transporter KUY52_10805 PF07690 Major Facilitator Superfamily KUY52_10820 PF00155 Aminotransferase class I and II KUY52_10820 PF00392 Bacterial regulatory proteins, gntR family KUY52_10825 PF04172 LrgB-like family KUY52_10830 PF03788 LrgA family KUY52_10835 PF03466 LysR substrate binding domain KUY52_10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_10840 PF02798 Glutathione S-transferase, N-terminal domain KUY52_10840 PF14834 Glutathione S-transferase, C-terminal domain KUY52_10845 PF02798 Glutathione S-transferase, N-terminal domain KUY52_10850 PF03466 LysR substrate binding domain KUY52_10850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_10860 PF00581 Rhodanese-like domain KUY52_10865 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_10875 PF00266 Aminotransferase class-V KUY52_10885 PF01810 LysE type translocator KUY52_10890 PF03466 LysR substrate binding domain KUY52_10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_10900 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUY52_10905 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUY52_10910 PF00005 ABC transporter KUY52_10915 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_10920 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_10935 PF00072 Response regulator receiver domain KUY52_10940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_10940 PF09308 LuxQ, periplasmic KUY52_10940 PF00072 Response regulator receiver domain KUY52_10940 PF00512 His Kinase A (phospho-acceptor) domain KUY52_10950 PF01037 Lrp/AsnC ligand binding domain KUY52_10950 PF13404 AsnC-type helix-turn-helix domain KUY52_10960 PF00717 Peptidase S24-like KUY52_10985 PF06628 Catalase-related immune-responsive KUY52_10985 PF00199 Catalase KUY52_10985 PF18011 C-terminal domain found in long catalases KUY52_10995 PF00994 Probable molybdopterin binding domain KUY52_10995 PF18146 Damage-inducible protein CinA KH domain KUY52_10995 PF02464 Competence-damaged protein KUY52_11030 PF03466 LysR substrate binding domain KUY52_11030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_11050 PF13193 AMP-binding enzyme C-terminal domain KUY52_11050 PF00501 AMP-binding enzyme KUY52_11055 PF00440 Bacterial regulatory proteins, tetR family KUY52_11060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_11060 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_11060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_11065 PF01039 Carboxyl transferase domain KUY52_11070 PF00378 Enoyl-CoA hydratase/isomerase KUY52_11075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUY52_11075 PF00364 Biotin-requiring enzyme KUY52_11075 PF18140 Propionyl-coenzyme A carboxylase BT domain KUY52_11075 PF02785 Biotin carboxylase C-terminal domain KUY52_11075 PF00289 Biotin carboxylase, N-terminal domain KUY52_11080 PF00682 HMGL-like KUY52_11085 PF03466 LysR substrate binding domain KUY52_11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_11100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_11100 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_11100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_11100 PF12806 Acetyl-CoA dehydrogenase C-terminal like KUY52_11110 PF07690 Major Facilitator Superfamily KUY52_11120 PF01144 Coenzyme A transferase KUY52_11125 PF01144 Coenzyme A transferase KUY52_11130 PF07690 Major Facilitator Superfamily KUY52_11135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_11135 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_11135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_11140 PF00378 Enoyl-CoA hydratase/isomerase KUY52_11150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUY52_11150 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KUY52_11150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUY52_11155 PF00108 Thiolase, N-terminal domain KUY52_11155 PF02803 Thiolase, C-terminal domain KUY52_11160 PF09339 IclR helix-turn-helix domain KUY52_11165 PF07690 Major Facilitator Superfamily KUY52_11170 PF03060 Nitronate monooxygenase KUY52_11175 PF00378 Enoyl-CoA hydratase/isomerase KUY52_11180 PF09339 IclR helix-turn-helix domain KUY52_11185 PF02515 CoA-transferase family III KUY52_11190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_11190 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_11190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_11195 PF07690 Major Facilitator Superfamily KUY52_11200 PF13419 Haloacid dehalogenase-like hydrolase KUY52_11205 PF00266 Aminotransferase class-V KUY52_11210 PF01266 FAD dependent oxidoreductase KUY52_11215 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_11220 PF08402 TOBE domain KUY52_11220 PF00005 ABC transporter KUY52_11230 PF07702 UTRA domain KUY52_11230 PF00392 Bacterial regulatory proteins, gntR family KUY52_11235 PF01494 FAD binding domain KUY52_11240 PF09339 IclR helix-turn-helix domain KUY52_11240 PF01614 Bacterial transcriptional regulator KUY52_11245 PF02525 Flavodoxin-like fold KUY52_11250 PF03466 LysR substrate binding domain KUY52_11250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_11255 PF02627 Carboxymuconolactone decarboxylase family KUY52_11260 PF00171 Aldehyde dehydrogenase family KUY52_11270 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KUY52_11280 PF00171 Aldehyde dehydrogenase family KUY52_11285 PF00296 Luciferase-like monooxygenase KUY52_11290 PF01613 Flavin reductase like domain KUY52_11295 PF12697 Alpha/beta hydrolase family KUY52_11315 PF01292 Prokaryotic cytochrome b561 KUY52_11320 PF00199 Catalase KUY52_11355 PF03061 Thioesterase superfamily KUY52_11360 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_11365 PF08223 PaaX-like protein C-terminal domain KUY52_11365 PF07848 PaaX-like protein KUY52_11370 PF14535 AMP-binding enzyme C-terminal domain KUY52_11370 PF00501 AMP-binding enzyme KUY52_11375 PF00108 Thiolase, N-terminal domain KUY52_11375 PF02803 Thiolase, C-terminal domain KUY52_11380 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUY52_11380 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain KUY52_11380 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUY52_11385 PF00378 Enoyl-CoA hydratase/isomerase KUY52_11390 PF00378 Enoyl-CoA hydratase/isomerase KUY52_11395 PF00970 Oxidoreductase FAD-binding domain KUY52_11395 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_11395 PF00175 Oxidoreductase NAD-binding domain KUY52_11400 PF01883 Iron-sulfur cluster assembly protein KUY52_11405 PF05138 Phenylacetic acid catabolic protein KUY52_11410 PF06243 Phenylacetic acid degradation B KUY52_11415 PF05138 Phenylacetic acid catabolic protein KUY52_11420 PF00171 Aldehyde dehydrogenase family KUY52_11420 PF01575 MaoC like domain KUY52_11425 PF03313 Serine dehydratase alpha chain KUY52_11425 PF03315 Serine dehydratase beta chain KUY52_11430 PF13520 Amino acid permease KUY52_11435 PF00171 Aldehyde dehydrogenase family KUY52_11440 PF00083 Sugar (and other) transporter KUY52_11450 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_11450 PF04324 BFD-like [2Fe-2S] binding domain KUY52_11460 PF01266 FAD dependent oxidoreductase KUY52_11465 PF05544 Proline racemase KUY52_11470 PF00392 Bacterial regulatory proteins, gntR family KUY52_11480 PF00701 Dihydrodipicolinate synthetase family KUY52_11490 PF09278 MerR, DNA binding KUY52_11490 PF00376 MerR family regulatory protein KUY52_11505 PF02677 Epoxyqueuosine reductase QueH KUY52_11520 PF07690 Major Facilitator Superfamily KUY52_11525 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KUY52_11535 PF03466 LysR substrate binding domain KUY52_11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_11555 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE KUY52_11560 PF06812 ImpA, N-terminal, type VI secretion system KUY52_11565 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_11565 PF07724 AAA domain (Cdc48 subfamily) KUY52_11565 PF17871 AAA lid domain KUY52_11565 PF10431 C-terminal, D2-small domain, of ClpB protein KUY52_11575 PF00691 OmpA family KUY52_11575 PF01389 OmpA-like transmembrane domain KUY52_11585 PF06761 Intracellular multiplication and human macrophage-killing KUY52_11585 PF14331 ImcF-related N-terminal domain KUY52_11585 PF06744 Type VI secretion protein IcmF C-terminal KUY52_11600 PF05947 Type VI secretion system, TssF KUY52_11615 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath KUY52_11640 PF00005 ABC transporter KUY52_11645 PF00497 Bacterial extracellular solute-binding proteins, family 3 KUY52_11650 PF01425 Amidase KUY52_11655 PF08753 NikR C terminal nickel binding domain KUY52_11655 PF01402 Ribbon-helix-helix protein, copG family KUY52_11675 PF02525 Flavodoxin-like fold KUY52_11680 PF02785 Biotin carboxylase C-terminal domain KUY52_11680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUY52_11680 PF00289 Biotin carboxylase, N-terminal domain KUY52_11695 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_11695 PF13823 Alcohol dehydrogenase GroES-associated KUY52_11695 PF00107 Zinc-binding dehydrogenase KUY52_11705 PF00440 Bacterial regulatory proteins, tetR family KUY52_11725 PF00654 Voltage gated chloride channel KUY52_11730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KUY52_11730 PF00364 Biotin-requiring enzyme KUY52_11730 PF00289 Biotin carboxylase, N-terminal domain KUY52_11730 PF02785 Biotin carboxylase C-terminal domain KUY52_11740 PF07286 Protein of unknown function (DUF1445) KUY52_11745 PF03746 LamB/YcsF family KUY52_11750 PF01566 Natural resistance-associated macrophage protein KUY52_11755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_11755 PF03466 LysR substrate binding domain KUY52_11770 PF03527 RHS protein KUY52_11770 PF05593 RHS Repeat KUY52_11775 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KUY52_11775 PF04717 Type VI secretion system, phage-baseplate injector KUY52_11775 PF13296 Putative type VI secretion system Rhs element Vgr KUY52_11785 PF13419 Haloacid dehalogenase-like hydrolase KUY52_11805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUY52_11805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUY52_11825 PF07690 Major Facilitator Superfamily KUY52_11835 PF03279 Bacterial lipid A biosynthesis acyltransferase KUY52_11840 PF00990 Diguanylate cyclase, GGDEF domain KUY52_11840 PF00563 EAL domain KUY52_11840 PF03707 Bacterial signalling protein N terminal repeat KUY52_11845 PF00892 EamA-like transporter family KUY52_11850 PF01037 Lrp/AsnC ligand binding domain KUY52_11855 PF01624 MutS domain I KUY52_11855 PF05188 MutS domain II KUY52_11855 PF05192 MutS domain III KUY52_11855 PF05190 MutS family domain IV KUY52_11855 PF00488 MutS domain V KUY52_11865 PF11953 Domain of unknown function (DUF3470) KUY52_11865 PF00037 4Fe-4S binding domain KUY52_11875 PF01596 O-methyltransferase KUY52_11885 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_11890 PF01205 Uncharacterized protein family UPF0029 KUY52_11900 PF00664 ABC transporter transmembrane region KUY52_11900 PF00005 ABC transporter KUY52_11900 PF03412 Peptidase C39 family KUY52_11905 PF02321 Outer membrane efflux protein KUY52_11910 PF00005 ABC transporter KUY52_11910 PF12399 Branched-chain amino acid ATP-binding cassette transporter KUY52_11915 PF03968 OstA-like protein KUY52_11930 PF00571 CBS domain KUY52_11930 PF01380 SIS domain KUY52_11935 PF09190 DALR domain KUY52_11935 PF01406 tRNA synthetases class I (C) catalytic domain KUY52_11960 PF01638 HxlR-like helix-turn-helix KUY52_11965 PF07690 Major Facilitator Superfamily KUY52_11990 PF14748 Pyrroline-5-carboxylate reductase dimerisation KUY52_11990 PF03807 NADP oxidoreductase coenzyme F420-dependent KUY52_12000 PF00313 'Cold-shock' DNA-binding domain KUY52_12005 PF01810 LysE type translocator KUY52_12035 PF02601 Exonuclease VII, large subunit KUY52_12035 PF13742 OB-fold nucleic acid binding domain KUY52_12070 PF09278 MerR, DNA binding KUY52_12070 PF00376 MerR family regulatory protein KUY52_12075 PF00403 Heavy-metal-associated domain KUY52_12085 PF06505 Activator of aromatic catabolism KUY52_12085 PF02830 V4R domain KUY52_12085 PF02954 Bacterial regulatory protein, Fis family KUY52_12085 PF00158 Sigma-54 interaction domain KUY52_12090 PF06099 Phenol hydroxylase subunit KUY52_12095 PF02332 Methane/Phenol/Toluene Hydroxylase KUY52_12100 PF02406 MmoB/DmpM family KUY52_12105 PF04945 YHS domain KUY52_12105 PF02332 Methane/Phenol/Toluene Hydroxylase KUY52_12115 PF00970 Oxidoreductase FAD-binding domain KUY52_12115 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_12115 PF00175 Oxidoreductase NAD-binding domain KUY52_12125 PF03466 LysR substrate binding domain KUY52_12125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_12130 PF00355 Rieske [2Fe-2S] domain KUY52_12130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUY52_12135 PF00866 Ring hydroxylating beta subunit KUY52_12140 PF00970 Oxidoreductase FAD-binding domain KUY52_12140 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_12140 PF00175 Oxidoreductase NAD-binding domain KUY52_12145 PF00106 short chain dehydrogenase KUY52_12150 PF03594 Benzoate membrane transport protein KUY52_12155 PF07690 Major Facilitator Superfamily KUY52_12165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KUY52_12165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KUY52_12170 PF00270 DEAD/DEAH box helicase KUY52_12170 PF11898 Domain of unknown function (DUF3418) KUY52_12170 PF04408 Helicase associated domain (HA2) KUY52_12170 PF00271 Helicase conserved C-terminal domain KUY52_12170 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KUY52_12175 PF10417 C-terminal domain of 1-Cys peroxiredoxin KUY52_12175 PF00578 AhpC/TSA family KUY52_12195 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_12195 PF13192 Thioredoxin domain KUY52_12205 PF00043 Glutathione S-transferase, C-terminal domain KUY52_12205 PF02798 Glutathione S-transferase, N-terminal domain KUY52_12215 PF02390 Putative methyltransferase KUY52_12220 PF13417 Glutathione S-transferase, N-terminal domain KUY52_12220 PF00043 Glutathione S-transferase, C-terminal domain KUY52_12230 PF00691 OmpA family KUY52_12230 PF13488 Glycine zipper KUY52_12235 PF01979 Amidohydrolase family KUY52_12240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KUY52_12240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KUY52_12250 PF10672 S-adenosylmethionine-dependent methyltransferase KUY52_12250 PF02926 THUMP domain KUY52_12250 PF01170 Putative RNA methylase family UPF0020 KUY52_12265 PF02861 Clp amino terminal domain, pathogenicity island component KUY52_12265 PF17871 AAA lid domain KUY52_12265 PF10431 C-terminal, D2-small domain, of ClpB protein KUY52_12265 PF07724 AAA domain (Cdc48 subfamily) KUY52_12265 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_12280 PF02566 OsmC-like protein KUY52_12290 PF00027 Cyclic nucleotide-binding domain KUY52_12290 PF13545 Crp-like helix-turn-helix domain KUY52_12295 PF00248 Aldo/keto reductase family KUY52_12310 PF00709 Adenylosuccinate synthetase KUY52_12315 PF13393 Histidyl-tRNA synthetase KUY52_12320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KUY52_12320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KUY52_12325 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KUY52_12325 PF02272 DHHA1 domain KUY52_12325 PF01411 tRNA synthetases class II (A) KUY52_12330 PF01842 ACT domain KUY52_12330 PF13840 ACT domain KUY52_12330 PF00696 Amino acid kinase family KUY52_12335 PF02599 Global regulator protein family KUY52_12340 PF01351 Ribonuclease HII KUY52_12350 PF01292 Prokaryotic cytochrome b561 KUY52_12355 PF00962 Adenosine/AMP deaminase KUY52_12360 PF00860 Permease family KUY52_12370 PF00743 Flavin-binding monooxygenase-like KUY52_12375 PF00106 short chain dehydrogenase KUY52_12385 PF13610 DDE domain KUY52_12400 PF00392 Bacterial regulatory proteins, gntR family KUY52_12400 PF07729 FCD domain KUY52_12410 PF00324 Amino acid permease KUY52_12415 PF01266 FAD dependent oxidoreductase KUY52_12420 PF00324 Amino acid permease KUY52_12460 PF03527 RHS protein KUY52_12460 PF05593 RHS Repeat KUY52_12465 PF04717 Type VI secretion system, phage-baseplate injector KUY52_12465 PF13296 Putative type VI secretion system Rhs element Vgr KUY52_12465 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) KUY52_12485 PF03180 NLPA lipoprotein KUY52_12490 PF05987 Bacterial protein of unknown function (DUF898) KUY52_12505 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_12505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUY52_12510 PF00764 Arginosuccinate synthase KUY52_12515 PF00990 Diguanylate cyclase, GGDEF domain KUY52_12515 PF00360 Phytochrome region KUY52_12515 PF00563 EAL domain KUY52_12515 PF01590 GAF domain KUY52_12520 PF01979 Amidohydrolase family KUY52_12525 PF00929 Exonuclease KUY52_12535 PF07715 TonB-dependent Receptor Plug Domain KUY52_12535 PF00593 TonB dependent receptor KUY52_12540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KUY52_12540 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_12545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KUY52_12545 PF00005 ABC transporter KUY52_12550 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_12550 PF12911 N-terminal TM domain of oligopeptide transport permease C KUY52_12555 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_12560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KUY52_12565 PF01464 Transglycosylase SLT domain KUY52_12565 PF01464 Transglycosylase SLT domain KUY52_12565 PF01476 LysM domain KUY52_12565 PF01476 LysM domain KUY52_12570 PF00929 Exonuclease KUY52_12580 PF00293 NUDIX domain KUY52_12580 PF09297 NADH pyrophosphatase zinc ribbon domain KUY52_12590 PF04972 BON domain KUY52_12595 PF02021 Uncharacterised protein family UPF0102 KUY52_12600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KUY52_12610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_12610 PF03466 LysR substrate binding domain KUY52_12615 PF01810 LysE type translocator KUY52_12625 PF13411 MerR HTH family regulatory protein KUY52_12635 PF01494 FAD binding domain KUY52_12640 PF01494 FAD binding domain KUY52_12645 PF05195 Aminopeptidase P, N-terminal domain KUY52_12645 PF00557 Metallopeptidase family M24 KUY52_12685 PF00884 Sulfatase KUY52_12685 PF08019 Phosphoethanolamine transferase EptA/EptB KUY52_12750 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB KUY52_12755 PF01381 Helix-turn-helix KUY52_13065 PF01812 5-formyltetrahydrofolate cyclo-ligase family KUY52_13070 PF00691 OmpA family KUY52_13070 PF04355 SmpA / OmlA family KUY52_13075 PF05662 Coiled stalk of trimeric autotransporter adhesin KUY52_13075 PF05658 Head domain of trimeric autotransporter adhesin KUY52_13075 PF13018 Extended Signal Peptide of Type V secretion system KUY52_13075 PF03895 YadA-like membrane anchor domain KUY52_13080 PF00004 ATPase family associated with various cellular activities (AAA) KUY52_13080 PF05362 Lon protease (S16) C-terminal proteolytic domain KUY52_13080 PF02190 ATP-dependent protease La (LON) substrate-binding domain KUY52_13085 PF02590 Predicted SPOUT methyltransferase KUY52_13090 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KUY52_13100 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KUY52_13100 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KUY52_13105 PF04060 Putative Fe-S cluster KUY52_13110 PF10576 Iron-sulfur binding domain of endonuclease III KUY52_13110 PF00730 HhH-GPD superfamily base excision DNA repair protein KUY52_13110 PF00633 Helix-hairpin-helix motif KUY52_13120 PF05191 Adenylate kinase, active site lid KUY52_13135 PF03717 Penicillin-binding Protein dimerisation domain KUY52_13135 PF00905 Penicillin binding protein transpeptidase domain KUY52_13150 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUY52_13155 PF01730 UreF KUY52_13160 PF02814 UreE urease accessory protein, N-terminal domain KUY52_13160 PF05194 UreE urease accessory protein, C-terminal domain KUY52_13170 PF00547 Urease, gamma subunit KUY52_13175 PF01774 UreD urease accessory protein KUY52_13195 PF00463 Isocitrate lyase family KUY52_13200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_13200 PF03466 LysR substrate binding domain KUY52_13205 PF00571 CBS domain KUY52_13205 PF03471 Transporter associated domain KUY52_13205 PF01595 Cyclin M transmembrane N-terminal domain KUY52_13225 PF00009 Elongation factor Tu GTP binding domain KUY52_13230 PF01507 Phosphoadenosine phosphosulfate reductase family KUY52_13240 PF14052 Capsule assembly protein Wzi KUY52_13245 PF01336 OB-fold nucleic acid binding domain KUY52_13245 PF00152 tRNA synthetases class II (D, K and N) KUY52_13260 PF00301 Rubredoxin KUY52_13265 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_13265 PF18113 Rubredoxin binding C-terminal domain KUY52_13270 PF00561 alpha/beta hydrolase fold KUY52_13275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_13275 PF03466 LysR substrate binding domain KUY52_13285 PF02503 Polyphosphate kinase middle domain KUY52_13285 PF13090 Polyphosphate kinase C-terminal domain 2 KUY52_13285 PF17941 Polyphosphate kinase C-terminal domain 1 KUY52_13285 PF13089 Polyphosphate kinase N-terminal domain KUY52_13290 PF00912 Transglycosylase KUY52_13315 PF00005 ABC transporter KUY52_13320 PF13472 GDSL-like Lipase/Acylhydrolase family KUY52_13325 PF00484 Carbonic anhydrase KUY52_13330 PF00561 alpha/beta hydrolase fold KUY52_13340 PF07715 TonB-dependent Receptor Plug Domain KUY52_13340 PF00593 TonB dependent receptor KUY52_13345 PF01106 NifU-like domain KUY52_13345 PF01521 Iron-sulphur cluster biosynthesis KUY52_13355 PF00884 Sulfatase KUY52_13360 PF03781 Sulfatase-modifying factor enzyme 1 KUY52_13375 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_13380 PF01384 Phosphate transporter family KUY52_13385 PF00809 Pterin binding enzyme KUY52_13385 PF02965 Vitamin B12 dependent methionine synthase, activation domain KUY52_13385 PF02607 B12 binding domain KUY52_13385 PF02310 B12 binding domain KUY52_13385 PF02574 Homocysteine S-methyltransferase KUY52_13390 PF02779 Transketolase, pyrimidine binding domain KUY52_13390 PF02780 Transketolase, C-terminal domain KUY52_13395 PF00456 Transketolase, thiamine diphosphate binding domain KUY52_13400 PF07690 Major Facilitator Superfamily KUY52_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_13410 PF03466 LysR substrate binding domain KUY52_13420 PF01263 Aldose 1-epimerase KUY52_13425 PF07690 Major Facilitator Superfamily KUY52_13430 PF02311 AraC-like ligand binding domain KUY52_13430 PF12833 Helix-turn-helix domain KUY52_13435 PF04960 Glutaminase KUY52_13440 PF01327 Polypeptide deformylase KUY52_13445 PF07690 Major Facilitator Superfamily KUY52_13455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUY52_13455 PF00205 Thiamine pyrophosphate enzyme, central domain KUY52_13455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUY52_13460 PF00171 Aldehyde dehydrogenase family KUY52_13465 PF03447 Homoserine dehydrogenase, NAD binding domain KUY52_13465 PF01958 Domain of unknown function DUF108 KUY52_13475 PF12697 Alpha/beta hydrolase family KUY52_13485 PF07690 Major Facilitator Superfamily KUY52_13490 PF14759 Reductase C-terminal KUY52_13490 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_13495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KUY52_13505 PF00355 Rieske [2Fe-2S] domain KUY52_13515 PF00355 Rieske [2Fe-2S] domain KUY52_13520 PF09339 IclR helix-turn-helix domain KUY52_13520 PF01614 Bacterial transcriptional regulator KUY52_13535 PF00378 Enoyl-CoA hydratase/isomerase KUY52_13545 PF00535 Glycosyl transferase family 2 KUY52_13550 PF14883 Hypothetical glycosyl hydrolase family 13 KUY52_13550 PF01522 Polysaccharide deacetylase KUY52_13555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUY52_13560 PF07152 YaeQ protein KUY52_13565 PF00375 Sodium:dicarboxylate symporter family KUY52_13570 PF07683 Cobalamin synthesis protein cobW C-terminal domain KUY52_13570 PF02492 CobW/HypB/UreG, nucleotide-binding domain KUY52_13580 PF03061 Thioesterase superfamily KUY52_13590 PF02028 BCCT, betaine/carnitine/choline family transporter KUY52_13595 PF02028 BCCT, betaine/carnitine/choline family transporter KUY52_13600 PF13977 BetI-type transcriptional repressor, C-terminal KUY52_13600 PF00440 Bacterial regulatory proteins, tetR family KUY52_13605 PF00171 Aldehyde dehydrogenase family KUY52_13610 PF05199 GMC oxidoreductase KUY52_13610 PF00732 GMC oxidoreductase KUY52_13615 PF06039 Malate:quinone oxidoreductase (Mqo) KUY52_13625 PF02574 Homocysteine S-methyltransferase KUY52_13630 PF13520 Amino acid permease KUY52_13655 PF00701 Dihydrodipicolinate synthetase family KUY52_13660 PF00083 Sugar (and other) transporter KUY52_13715 PF00717 Peptidase S24-like KUY52_13720 PF13438 Domain of unknown function (DUF4113) KUY52_13720 PF00817 impB/mucB/samB family KUY52_13720 PF11799 impB/mucB/samB family C-terminal domain KUY52_13720 PF11798 IMS family HHH motif KUY52_13805 PF02768 DNA polymerase III beta subunit, C-terminal domain KUY52_13805 PF00712 DNA polymerase III beta subunit, N-terminal domain KUY52_13805 PF02767 DNA polymerase III beta subunit, central domain KUY52_13845 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KUY52_13995 PF07007 Lysozyme inhibitor LprI KUY52_14040 PF01695 IstB-like ATP binding protein KUY52_14050 PF01555 DNA methylase KUY52_14080 PF01555 DNA methylase KUY52_14085 PF00145 C-5 cytosine-specific DNA methylase KUY52_14155 PF00929 Exonuclease KUY52_14195 PF07690 Major Facilitator Superfamily KUY52_14200 PF13533 Biotin-lipoyl like KUY52_14205 PF03061 Thioesterase superfamily KUY52_14210 PF00490 Delta-aminolevulinic acid dehydratase KUY52_14215 PF01266 FAD dependent oxidoreductase KUY52_14220 PF08338 Domain of unknown function (DUF1731) KUY52_14220 PF01370 NAD dependent epimerase/dehydratase family KUY52_14240 PF12320 Type 5 capsule protein repressor C-terminal domain KUY52_14240 PF00149 Calcineurin-like phosphoesterase KUY52_14250 PF01168 Alanine racemase, N-terminal domain KUY52_14255 PF00437 Type II/IV secretion system protein KUY52_14260 PF00437 Type II/IV secretion system protein KUY52_14265 PF01475 Ferric uptake regulator family KUY52_14270 PF04355 SmpA / OmlA family KUY52_14275 PF03658 RnfH family Ubiquitin KUY52_14285 PF01814 Hemerythrin HHE cation binding domain KUY52_14290 PF13230 Glutamine amidotransferases class-II KUY52_14300 PF00696 Amino acid kinase family KUY52_14305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUY52_14305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUY52_14305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUY52_14305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUY52_14310 PF00692 dUTPase KUY52_14315 PF00580 UvrD/REP helicase N-terminal domain KUY52_14315 PF13361 UvrD-like helicase C-terminal domain KUY52_14320 PF00691 OmpA family KUY52_14320 PF13488 Glycine zipper KUY52_14325 PF01553 Acyltransferase KUY52_14335 PF03775 Septum formation inhibitor MinC, C-terminal domain KUY52_14340 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KUY52_14345 PF03776 Septum formation topological specificity factor MinE KUY52_14365 PF01810 LysE type translocator KUY52_14370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KUY52_14370 PF17854 FtsK alpha domain KUY52_14370 PF09397 Ftsk gamma domain KUY52_14370 PF01580 FtsK/SpoIIIE family KUY52_14375 PF07992 Pyridine nucleotide-disulphide oxidoreductase KUY52_14380 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KUY52_14385 PF04377 Arginine-tRNA-protein transferase, C terminus KUY52_14385 PF04376 Arginine-tRNA-protein transferase, N terminus KUY52_14390 PF00583 Acetyltransferase (GNAT) family KUY52_14405 PF03144 Elongation factor Tu domain 2 KUY52_14405 PF03143 Elongation factor Tu C-terminal domain KUY52_14405 PF00009 Elongation factor Tu GTP binding domain KUY52_14410 PF00679 Elongation factor G C-terminus KUY52_14410 PF14492 Elongation Factor G, domain II KUY52_14410 PF03764 Elongation factor G, domain IV KUY52_14410 PF00009 Elongation factor Tu GTP binding domain KUY52_14410 PF03144 Elongation factor Tu domain 2 KUY52_14415 PF00177 Ribosomal protein S7p/S5e KUY52_14420 PF00164 Ribosomal protein S12/S23 KUY52_14430 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_14430 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_14435 PF03653 Uncharacterised protein family (UPF0093) KUY52_14440 PF05726 Pirin C-terminal cupin domain KUY52_14440 PF02678 Pirin KUY52_14450 PF00795 Carbon-nitrogen hydrolase KUY52_14450 PF02540 NAD synthase KUY52_14465 PF00970 Oxidoreductase FAD-binding domain KUY52_14465 PF00111 2Fe-2S iron-sulfur cluster binding domain KUY52_14465 PF00175 Oxidoreductase NAD-binding domain KUY52_14470 PF00171 Aldehyde dehydrogenase family KUY52_14475 PF00355 Rieske [2Fe-2S] domain KUY52_14475 PF00848 Ring hydroxylating alpha subunit (catalytic domain) KUY52_14480 PF07859 alpha/beta hydrolase fold KUY52_14485 PF02028 BCCT, betaine/carnitine/choline family transporter KUY52_14490 PF00180 Isocitrate/isopropylmalate dehydrogenase KUY52_14495 PF03466 LysR substrate binding domain KUY52_14495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_14515 PF00037 4Fe-4S binding domain KUY52_14520 PF01467 Cytidylyltransferase-like KUY52_14525 PF01668 SmpB protein KUY52_14530 PF03358 NADPH-dependent FMN reductase KUY52_14535 PF02578 Multi-copper polyphenol oxidoreductase laccase KUY52_14540 PF01479 S4 domain KUY52_14540 PF00849 RNA pseudouridylate synthase KUY52_14545 PF13525 Outer membrane lipoprotein KUY52_14550 PF08275 DNA primase catalytic core, N-terminal domain KUY52_14550 PF01807 CHC2 zinc finger KUY52_14550 PF10410 DnaB-helicase binding domain of primase KUY52_14550 PF08278 DNA primase DnaG DnaB-binding KUY52_14555 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KUY52_14555 PF01488 Shikimate / quinate 5-dehydrogenase KUY52_14555 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KUY52_14565 PF03550 Outer membrane lipoprotein LolB KUY52_14570 PF08544 GHMP kinases C terminal KUY52_14570 PF00288 GHMP kinases N terminal domain KUY52_14595 PF14572 Phosphoribosyl synthetase-associated domain KUY52_14595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KUY52_14600 PF01386 Ribosomal L25p family KUY52_14605 PF01195 Peptidyl-tRNA hydrolase KUY52_14610 PF02261 Aspartate decarboxylase KUY52_14625 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KUY52_14635 PF03070 TENA/THI-4/PQQC family KUY52_14635 PF02581 Thiamine monophosphate synthase KUY52_14635 PF08543 Phosphomethylpyrimidine kinase KUY52_14640 PF04972 BON domain KUY52_14640 PF01476 LysM domain KUY52_14645 PF00550 Phosphopantetheine attachment site KUY52_14655 PF00698 Acyl transferase domain KUY52_14660 PF01783 Ribosomal L32p protein family KUY52_14665 PF02620 Large ribosomal RNA subunit accumulation protein YceD KUY52_14670 PF04315 Elongation factor P hydroxylase KUY52_14675 PF01300 Telomere recombination KUY52_14680 PF02616 Segregation and condensation protein ScpA KUY52_14685 PF04079 Segregation and condensation complex subunit ScpB KUY52_14690 PF00849 RNA pseudouridylate synthase KUY52_14690 PF01479 S4 domain KUY52_14705 PF00155 Aminotransferase class I and II KUY52_14710 PF00202 Aminotransferase class-III KUY52_14710 PF06968 Biotin and Thiamin Synthesis associated domain KUY52_14710 PF04055 Radical SAM superfamily KUY52_14715 PF12697 Alpha/beta hydrolase family KUY52_14715 PF08241 Methyltransferase domain KUY52_14720 PF02358 Trehalose-phosphatase KUY52_14725 PF00982 Glycosyltransferase family 20 KUY52_14730 PF07690 Major Facilitator Superfamily KUY52_14735 PF00210 Ferritin-like domain KUY52_14740 PF00533 BRCA1 C Terminus (BRCT) domain KUY52_14740 PF01653 NAD-dependent DNA ligase adenylation domain KUY52_14740 PF03120 NAD-dependent DNA ligase OB-fold domain KUY52_14740 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KUY52_14740 PF12826 Helix-hairpin-helix motif KUY52_14750 PF06470 SMC proteins Flexible Hinge Domain KUY52_14750 PF02463 RecF/RecN/SMC N terminal domain KUY52_14760 PF01925 Sulfite exporter TauE/SafE KUY52_14770 PF03309 Type III pantothenate kinase KUY52_14775 PF02881 SRP54-type protein, helical bundle domain KUY52_14775 PF02978 Signal peptide binding domain KUY52_14775 PF00448 SRP54-type protein, GTPase domain KUY52_14785 PF01207 Dihydrouridine synthase (Dus) KUY52_14815 PF00692 dUTPase KUY52_14830 PF01048 Phosphorylase superfamily KUY52_14835 PF10609 NUBPL iron-transfer P-loop NTPase KUY52_14845 PF09334 tRNA synthetases class I (M) KUY52_14845 PF01588 Putative tRNA binding domain KUY52_14870 PF13533 Biotin-lipoyl like KUY52_14875 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_14890 PF05552 Conserved TM helix KUY52_14905 PF00970 Oxidoreductase FAD-binding domain KUY52_14905 PF00175 Oxidoreductase NAD-binding domain KUY52_14910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_14910 PF03466 LysR substrate binding domain KUY52_14915 PF00313 'Cold-shock' DNA-binding domain KUY52_14925 PF00361 Proton-conducting membrane transporter KUY52_14930 PF00361 Proton-conducting membrane transporter KUY52_14935 PF00361 Proton-conducting membrane transporter KUY52_14935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KUY52_14940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KUY52_14945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KUY52_14950 PF12838 4Fe-4S dicluster domain KUY52_14955 PF00146 NADH dehydrogenase KUY52_14960 PF00384 Molybdopterin oxidoreductase KUY52_14960 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KUY52_14960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KUY52_14965 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KUY52_14965 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KUY52_14965 PF10531 SLBB domain KUY52_14975 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KUY52_14975 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KUY52_14980 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KUY52_14985 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KUY52_14990 PF00990 Diguanylate cyclase, GGDEF domain KUY52_14990 PF17151 Periplasmic sensor domain KUY52_15000 PF00512 His Kinase A (phospho-acceptor) domain KUY52_15000 PF00672 HAMP domain KUY52_15000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_15005 PF00486 Transcriptional regulatory protein, C terminal KUY52_15005 PF00072 Response regulator receiver domain KUY52_15015 PF02867 Ribonucleotide reductase, barrel domain KUY52_15015 PF00317 Ribonucleotide reductase, all-alpha domain KUY52_15015 PF03477 ATP cone domain KUY52_15025 PF00268 Ribonucleotide reductase, small chain KUY52_15035 PF13755 Sensor N-terminal transmembrane domain KUY52_15035 PF00672 HAMP domain KUY52_15035 PF00512 His Kinase A (phospho-acceptor) domain KUY52_15035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_15035 PF13756 Stimulus-sensing domain KUY52_15105 PF13360 PQQ-like domain KUY52_15105 PF01011 PQQ enzyme repeat KUY52_15130 PF02567 Phenazine biosynthesis-like protein KUY52_15150 PF01613 Flavin reductase like domain KUY52_15155 PF01717 Cobalamin-independent synthase, Catalytic domain KUY52_15155 PF08267 Cobalamin-independent synthase, N-terminal domain KUY52_15165 PF03466 LysR substrate binding domain KUY52_15165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_15170 PF01810 LysE type translocator KUY52_15180 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KUY52_15180 PF12833 Helix-turn-helix domain KUY52_15185 PF01546 Peptidase family M20/M25/M40 KUY52_15185 PF07687 Peptidase dimerisation domain KUY52_15195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_15195 PF03466 LysR substrate binding domain KUY52_15200 PF07690 Major Facilitator Superfamily KUY52_15210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_15210 PF03466 LysR substrate binding domain KUY52_15215 PF14537 Cytochrome c3 KUY52_15215 PF00890 FAD binding domain KUY52_15225 PF02515 CoA-transferase family III KUY52_15230 PF07690 Major Facilitator Superfamily KUY52_15235 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_15235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_15235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_15240 PF03466 LysR substrate binding domain KUY52_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_15245 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_15245 PF00107 Zinc-binding dehydrogenase KUY52_15250 PF00962 Adenosine/AMP deaminase KUY52_15275 PF02445 Quinolinate synthetase A protein KUY52_15280 PF01960 ArgJ family KUY52_15285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KUY52_15285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KUY52_15290 PF00893 Small Multidrug Resistance protein KUY52_15300 PF05275 Copper resistance protein B precursor (CopB) KUY52_15305 PF07732 Multicopper oxidase KUY52_15305 PF00394 Multicopper oxidase KUY52_15305 PF07731 Multicopper oxidase KUY52_15320 PF00834 Ribulose-phosphate 3 epimerase family KUY52_15330 PF00756 Putative esterase KUY52_15340 PF04445 Putative SAM-dependent methyltransferase KUY52_15345 PF00814 Glycoprotease family KUY52_15350 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_15355 PF00293 NUDIX domain KUY52_15395 PF00425 chorismate binding enzyme KUY52_15395 PF04715 Anthranilate synthase component I, N terminal region KUY52_15400 PF00155 Aminotransferase class I and II KUY52_15405 PF00815 Histidinol dehydrogenase KUY52_15410 PF01634 ATP phosphoribosyltransferase KUY52_15415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KUY52_15420 PF01722 BolA-like protein KUY52_15425 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KUY52_15430 PF00309 Sigma-54 factor, Activator interacting domain (AID) KUY52_15430 PF04963 Sigma-54 factor, core binding domain KUY52_15430 PF04552 Sigma-54, DNA binding domain KUY52_15475 PF00795 Carbon-nitrogen hydrolase KUY52_15485 PF01047 MarR family KUY52_15490 PF02566 OsmC-like protein KUY52_15495 PF00437 Type II/IV secretion system protein KUY52_15515 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KUY52_15515 PF00476 DNA polymerase family A KUY52_15515 PF01367 5'-3' exonuclease, C-terminal SAM fold KUY52_15515 PF01612 3'-5' exonuclease KUY52_15535 PF03807 NADP oxidoreductase coenzyme F420-dependent KUY52_15535 PF14748 Pyrroline-5-carboxylate reductase dimerisation KUY52_15540 PF01171 PP-loop family KUY52_15540 PF09179 TilS substrate binding domain KUY52_15540 PF11734 TilS substrate C-terminal domain KUY52_15545 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KUY52_15550 PF02541 Ppx/GppA phosphatase family KUY52_15555 PF00085 Thioredoxin KUY52_15560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUY52_15560 PF07498 Rho termination factor, N-terminal domain KUY52_15560 PF07497 Rho termination factor, RNA-binding domain KUY52_15575 PF00216 Bacterial DNA-binding protein KUY52_15580 PF03484 tRNA synthetase B5 domain KUY52_15580 PF03483 B3/4 domain KUY52_15580 PF03147 Ferredoxin-fold anticodon binding domain KUY52_15580 PF01588 Putative tRNA binding domain KUY52_15580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KUY52_15585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KUY52_15585 PF01409 tRNA synthetases class II core domain (F) KUY52_15605 PF00453 Ribosomal protein L20 KUY52_15610 PF01632 Ribosomal protein L35 KUY52_15615 PF07690 Major Facilitator Superfamily KUY52_15620 PF09335 SNARE associated Golgi protein KUY52_15625 PF00043 Glutathione S-transferase, C-terminal domain KUY52_15625 PF02798 Glutathione S-transferase, N-terminal domain KUY52_15630 PF00707 Translation initiation factor IF-3, C-terminal domain KUY52_15630 PF05198 Translation initiation factor IF-3, N-terminal domain KUY52_15635 PF02824 TGS domain KUY52_15635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KUY52_15635 PF03129 Anticodon binding domain KUY52_15635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KUY52_15640 PF13193 AMP-binding enzyme C-terminal domain KUY52_15640 PF00501 AMP-binding enzyme KUY52_15645 PF04751 Protein of unknown function (DUF615) KUY52_15650 PF00381 PTS HPr component phosphorylation site KUY52_15655 PF03668 P-loop ATPase protein family KUY52_15660 PF02569 Pantoate-beta-alanine ligase KUY52_15665 PF02548 Ketopantoate hydroxymethyltransferase KUY52_15670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KUY52_15675 PF01743 Poly A polymerase head domain KUY52_15675 PF12626 Polymerase A arginine-rich C-terminus KUY52_15675 PF12627 Probable RNA and SrmB- binding site of polymerase A KUY52_15685 PF03819 MazG nucleotide pyrophosphohydrolase domain KUY52_15695 PF13291 ACT domain KUY52_15695 PF04607 Region found in RelA / SpoT proteins KUY52_15695 PF02824 TGS domain KUY52_15700 PF05958 tRNA (Uracil-5-)-methyltransferase KUY52_15710 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_15715 PF00072 Response regulator receiver domain KUY52_15715 PF01627 Hpt domain KUY52_15715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KUY52_15715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_15715 PF00512 His Kinase A (phospho-acceptor) domain KUY52_15715 PF00672 HAMP domain KUY52_15720 PF00378 Enoyl-CoA hydratase/isomerase KUY52_15725 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KUY52_15725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KUY52_15730 PF01261 Xylose isomerase-like TIM barrel KUY52_15740 PF00106 short chain dehydrogenase KUY52_15745 PF02233 NAD(P) transhydrogenase beta subunit KUY52_15750 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KUY52_15755 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KUY52_15755 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KUY52_15760 PF00892 EamA-like transporter family KUY52_15770 PF07690 Major Facilitator Superfamily KUY52_15775 PF01207 Dihydrouridine synthase (Dus) KUY52_15785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_15785 PF03466 LysR substrate binding domain KUY52_15795 PF00899 ThiF family KUY52_15805 PF00330 Aconitase family (aconitate hydratase) KUY52_15805 PF00694 Aconitase C-terminal domain KUY52_15810 PF01026 TatD related DNase KUY52_15825 PF03144 Elongation factor Tu domain 2 KUY52_15825 PF16658 Class II release factor RF3, C-terminal domain KUY52_15825 PF00009 Elongation factor Tu GTP binding domain KUY52_15845 PF00563 EAL domain KUY52_15845 PF00990 Diguanylate cyclase, GGDEF domain KUY52_15845 PF03707 Bacterial signalling protein N terminal repeat KUY52_15850 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KUY52_15850 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KUY52_15855 PF10369 Small subunit of acetolactate synthase KUY52_15860 PF00205 Thiamine pyrophosphate enzyme, central domain KUY52_15860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KUY52_15860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KUY52_15870 PF08264 Anticodon-binding domain of tRNA KUY52_15870 PF00133 tRNA synthetases class I (I, L, M and V) KUY52_15870 PF13603 Leucyl-tRNA synthetase, Domain 2 KUY52_15870 PF09334 tRNA synthetases class I (M) KUY52_15885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KUY52_15890 PF02687 FtsX-like permease family KUY52_15890 PF00005 ABC transporter KUY52_15890 PF12704 MacB-like periplasmic core domain KUY52_15895 PF02321 Outer membrane efflux protein KUY52_15910 PF00929 Exonuclease KUY52_15915 PF03193 RsgA GTPase KUY52_15925 PF00462 Glutaredoxin KUY52_15930 PF02556 Preprotein translocase subunit SecB KUY52_15945 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_15945 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_15960 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_15960 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_15970 PF04820 Tryptophan halogenase KUY52_15990 PF00221 Aromatic amino acid lyase KUY52_16005 PF13193 AMP-binding enzyme C-terminal domain KUY52_16005 PF00501 AMP-binding enzyme KUY52_16015 PF00550 Phosphopantetheine attachment site KUY52_16020 PF00550 Phosphopantetheine attachment site KUY52_16035 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KUY52_16035 PF01926 50S ribosome-binding GTPase KUY52_16040 PF13360 PQQ-like domain KUY52_16050 PF03129 Anticodon binding domain KUY52_16050 PF13393 Histidyl-tRNA synthetase KUY52_16055 PF04551 GcpE protein KUY52_16060 PF13464 Domain of unknown function (DUF4115) KUY52_16070 PF04055 Radical SAM superfamily KUY52_16075 PF00334 Nucleoside diphosphate kinase KUY52_16080 PF04384 Iron-sulphur cluster assembly KUY52_16085 PF01569 PAP2 superfamily KUY52_16090 PF00534 Glycosyl transferases group 1 KUY52_16090 PF13439 Glycosyltransferase Family 4 KUY52_16095 PF00595 PDZ domain KUY52_16095 PF03572 Peptidase family S41 KUY52_16095 PF17804 Tail specific protease N-terminal domain KUY52_16095 PF11818 C-terminal domain of tail specific protease (DUF3340) KUY52_16100 PF00933 Glycosyl hydrolase family 3 N terminal domain KUY52_16110 PF00561 alpha/beta hydrolase fold KUY52_16115 PF00171 Aldehyde dehydrogenase family KUY52_16120 PF00171 Aldehyde dehydrogenase family KUY52_16125 PF01202 Shikimate kinase KUY52_16130 PF02447 GntP family permease KUY52_16135 PF01081 KDPG and KHG aldolase KUY52_16140 PF00920 Dehydratase family KUY52_16145 PF00871 Acetokinase family KUY52_16150 PF07085 DRTGG domain KUY52_16150 PF01515 Phosphate acetyl/butaryl transferase KUY52_16155 PF05681 Fumarate hydratase (Fumerase) KUY52_16155 PF05683 Fumarase C-terminus KUY52_16170 PF07724 AAA domain (Cdc48 subfamily) KUY52_16170 PF10431 C-terminal, D2-small domain, of ClpB protein KUY52_16170 PF06689 ClpX C4-type zinc finger KUY52_16175 PF00574 Clp protease KUY52_16180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUY52_16180 PF05698 Bacterial trigger factor protein (TF) C-terminus KUY52_16180 PF05697 Bacterial trigger factor protein (TF) KUY52_16185 PF07715 TonB-dependent Receptor Plug Domain KUY52_16185 PF00593 TonB dependent receptor KUY52_16190 PF18331 PKHD-type hydroxylase C-terminal domain KUY52_16190 PF13640 2OG-Fe(II) oxygenase superfamily KUY52_16195 PF00682 HMGL-like KUY52_16195 PF08502 LeuA allosteric (dimerisation) domain KUY52_16200 PF00561 alpha/beta hydrolase fold KUY52_16205 PF00561 alpha/beta hydrolase fold KUY52_16205 PF07021 Methionine biosynthesis protein MetW KUY52_16215 PF01725 Ham1 family KUY52_16225 PF02416 mttA/Hcf106 family KUY52_16230 PF02416 mttA/Hcf106 family KUY52_16235 PF00902 Sec-independent protein translocase protein (TatC) KUY52_16255 PF01790 Prolipoprotein diacylglyceryl transferase KUY52_16270 PF00303 Thymidylate synthase KUY52_16275 PF00186 Dihydrofolate reductase KUY52_16285 PF01625 Peptide methionine sulfoxide reductase KUY52_16295 PF01618 MotA/TolQ/ExbB proton channel family KUY52_16305 PF01842 ACT domain KUY52_16305 PF00551 Formyl transferase KUY52_16315 PF00171 Aldehyde dehydrogenase family KUY52_16320 PF00830 Ribosomal L28 family KUY52_16325 PF00471 Ribosomal protein L33 KUY52_16330 PF00999 Sodium/hydrogen exchanger family KUY52_16330 PF02254 TrkA-N domain KUY52_16350 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KUY52_16355 PF00580 UvrD/REP helicase N-terminal domain KUY52_16355 PF13361 UvrD-like helicase C-terminal domain KUY52_16370 PF01131 DNA topoisomerase KUY52_16370 PF01751 Toprim domain KUY52_16370 PF01396 Topoisomerase DNA binding C4 zinc finger KUY52_16370 PF08272 Topoisomerase I zinc-ribbon-like KUY52_16380 PF01638 HxlR-like helix-turn-helix KUY52_16385 PF00107 Zinc-binding dehydrogenase KUY52_16385 PF08240 Alcohol dehydrogenase GroES-like domain KUY52_16390 PF04102 SlyX KUY52_16395 PF00005 ABC transporter KUY52_16395 PF12848 ABC transporter KUY52_16395 PF16326 ABC transporter C-terminal domain KUY52_16400 PF01810 LysE type translocator KUY52_16405 PF03279 Bacterial lipid A biosynthesis acyltransferase KUY52_16415 PF00375 Sodium:dicarboxylate symporter family KUY52_16425 PF01118 Semialdehyde dehydrogenase, NAD binding domain KUY52_16425 PF02774 Semialdehyde dehydrogenase, dimerisation domain KUY52_16445 PF01416 tRNA pseudouridine synthase KUY52_16455 PF01176 Translation initiation factor 1A / IF-1 KUY52_16470 PF00180 Isocitrate/isopropylmalate dehydrogenase KUY52_16480 PF00694 Aconitase C-terminal domain KUY52_16485 PF00330 Aconitase family (aconitate hydratase) KUY52_16495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_16495 PF03466 LysR substrate binding domain KUY52_16515 PF00293 NUDIX domain KUY52_16520 PF01590 GAF domain KUY52_16520 PF05524 PEP-utilising enzyme, N-terminal KUY52_16520 PF00391 PEP-utilising enzyme, mobile domain KUY52_16520 PF02896 PEP-utilising enzyme, TIM barrel domain KUY52_16525 PF00141 Peroxidase KUY52_16530 PF12706 Beta-lactamase superfamily domain KUY52_16535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_16535 PF03466 LysR substrate binding domain KUY52_16545 PF02798 Glutathione S-transferase, N-terminal domain KUY52_16550 PF13280 WYL domain KUY52_16550 PF08279 HTH domain KUY52_16555 PF13419 Haloacid dehalogenase-like hydrolase KUY52_16560 PF01479 S4 domain KUY52_16560 PF00849 RNA pseudouridylate synthase KUY52_16565 PF10150 Ribonuclease E/G family KUY52_16565 PF00575 S1 RNA binding domain KUY52_16565 PF12111 Polyribonucleotide phosphorylase C terminal KUY52_16570 PF00501 AMP-binding enzyme KUY52_16570 PF13193 AMP-binding enzyme C-terminal domain KUY52_16585 PF03466 LysR substrate binding domain KUY52_16585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KUY52_16590 PF00106 short chain dehydrogenase KUY52_16595 PF06969 HemN C-terminal domain KUY52_16595 PF04055 Radical SAM superfamily KUY52_16605 PF01554 MatE KUY52_16610 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_16610 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUY52_16610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_16615 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KUY52_16615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_16620 PF03109 ABC1 family KUY52_16625 PF01197 Ribosomal protein L31 KUY52_16640 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KUY52_16660 PF03884 DNA gyrase inhibitor YacG KUY52_16665 PF00753 Metallo-beta-lactamase superfamily KUY52_16670 PF00762 Ferrochelatase KUY52_16680 PF01177 Asp/Glu/Hydantoin racemase KUY52_16695 PF01206 Sulfurtransferase TusA KUY52_16700 PF00571 CBS domain KUY52_16700 PF03471 Transporter associated domain KUY52_16705 PF00795 Carbon-nitrogen hydrolase KUY52_16710 PF01588 Putative tRNA binding domain KUY52_16720 PF07963 Prokaryotic N-terminal methylation motif KUY52_16720 PF08334 Type II secretion system (T2SS), protein G KUY52_16725 PF00482 Type II secretion system (T2SS), protein F KUY52_16730 PF17764 3′ DNA-binding domain (3′BD) KUY52_16730 PF18074 Primosomal protein N C-terminal domain KUY52_16730 PF00270 DEAD/DEAH box helicase KUY52_16730 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KUY52_16730 PF00271 Helicase conserved C-terminal domain KUY52_16735 PF00999 Sodium/hydrogen exchanger family KUY52_16735 PF02254 TrkA-N domain KUY52_16740 PF01430 Hsp33 protein KUY52_16750 PF00226 DnaJ domain KUY52_16750 PF01556 DnaJ C terminal domain KUY52_16760 PF01544 CorA-like Mg2+ transporter protein KUY52_16765 PF00013 KH domain KUY52_16765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KUY52_16765 PF01138 3' exoribonuclease family, domain 1 KUY52_16765 PF03725 3' exoribonuclease family, domain 2 KUY52_16765 PF00575 S1 RNA binding domain KUY52_16770 PF00312 Ribosomal protein S15 KUY52_16775 PF00144 Beta-lactamase KUY52_16780 PF13538 UvrD-like helicase C-terminal domain KUY52_16785 PF12705 PD-(D/E)XK nuclease superfamily KUY52_16785 PF00580 UvrD/REP helicase N-terminal domain KUY52_16785 PF13361 UvrD-like helicase C-terminal domain KUY52_16790 PF17946 RecC C-terminal domain KUY52_16800 PF03976 Polyphosphate kinase 2 (PPK2) KUY52_16810 PF01209 ubiE/COQ5 methyltransferase family KUY52_16820 PF03109 ABC1 family KUY52_16825 PF01494 FAD binding domain KUY52_16830 PF01502 Phosphoribosyl-AMP cyclohydrolase KUY52_16845 PF13244 Domain of unknown function (DUF4040) KUY52_16845 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KUY52_16845 PF00361 Proton-conducting membrane transporter KUY52_16845 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KUY52_16850 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KUY52_16855 PF00361 Proton-conducting membrane transporter KUY52_16860 PF01899 Na+/H+ ion antiporter subunit KUY52_16865 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KUY52_16870 PF03334 Na+/H+ antiporter subunit KUY52_16875 PF02033 Ribosome-binding factor A KUY52_16880 PF04760 Translation initiation factor IF-2, N-terminal region KUY52_16880 PF08364 Bacterial translation initiation factor IF-2 associated region KUY52_16880 PF11987 Translation-initiation factor 2 KUY52_16880 PF00009 Elongation factor Tu GTP binding domain KUY52_16885 PF08529 NusA N-terminal domain KUY52_16885 PF13184 NusA-like KH domain KUY52_16885 PF00575 S1 RNA binding domain KUY52_16890 PF02576 RimP N-terminal domain KUY52_16890 PF17384 RimP C-terminal SH3 domain KUY52_16910 PF03840 Preprotein translocase SecG subunit KUY52_16915 PF00121 Triosephosphate isomerase KUY52_16920 PF00437 Type II/IV secretion system protein KUY52_16920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KUY52_16925 PF00482 Type II secretion system (T2SS), protein F KUY52_16930 PF01478 Type IV leader peptidase family KUY52_16930 PF06750 Bacterial Peptidase A24 N-terminal domain KUY52_16935 PF01121 Dephospho-CoA kinase KUY52_16945 PF00588 SpoU rRNA Methylase family KUY52_16945 PF08032 RNA 2'-O ribose methyltransferase substrate binding KUY52_16950 PF06865 Pyrimidine/purine nucleoside phosphorylase KUY52_16960 PF02463 RecF/RecN/SMC N terminal domain KUY52_16965 PF02622 Uncharacterized ACR, COG1678 KUY52_16970 PF03652 Holliday junction resolvase KUY52_16975 PF13533 Biotin-lipoyl like KUY52_17000 PF02805 Metal binding domain of Ada KUY52_17000 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KUY52_17000 PF12833 Helix-turn-helix domain KUY52_17000 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KUY52_17005 PF01066 CDP-alcohol phosphatidyltransferase KUY52_17015 PF01541 GIY-YIG catalytic domain KUY52_17015 PF02151 UvrB/uvrC motif KUY52_17015 PF08459 UvrC Helix-hairpin-helix N-terminal KUY52_17035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KUY52_17035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KUY52_17035 PF00378 Enoyl-CoA hydratase/isomerase KUY52_17040 PF00108 Thiolase, N-terminal domain KUY52_17040 PF02803 Thiolase, C-terminal domain KUY52_17060 PF09278 MerR, DNA binding KUY52_17060 PF00376 MerR family regulatory protein KUY52_17070 PF01323 DSBA-like thioredoxin domain KUY52_17085 PF00183 Hsp90 protein KUY52_17085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_17100 PF03553 Na+/H+ antiporter family KUY52_17100 PF13726 Na+-H+ antiporter family KUY52_17105 PF00561 alpha/beta hydrolase fold KUY52_17125 PF04983 RNA polymerase Rpb1, domain 3 KUY52_17125 PF04997 RNA polymerase Rpb1, domain 1 KUY52_17125 PF04998 RNA polymerase Rpb1, domain 5 KUY52_17125 PF05000 RNA polymerase Rpb1, domain 4 KUY52_17125 PF00623 RNA polymerase Rpb1, domain 2 KUY52_17130 PF04560 RNA polymerase Rpb2, domain 7 KUY52_17130 PF00562 RNA polymerase Rpb2, domain 6 KUY52_17130 PF10385 RNA polymerase beta subunit external 1 domain KUY52_17130 PF04561 RNA polymerase Rpb2, domain 2 KUY52_17130 PF04563 RNA polymerase beta subunit KUY52_17130 PF04565 RNA polymerase Rpb2, domain 3 KUY52_17135 PF16320 Ribosomal protein L7/L12 dimerisation domain KUY52_17135 PF00542 Ribosomal protein L7/L12 C-terminal domain KUY52_17140 PF00466 Ribosomal protein L10 KUY52_17145 PF00687 Ribosomal protein L1p/L10e family KUY52_17150 PF03946 Ribosomal protein L11, N-terminal domain KUY52_17150 PF00298 Ribosomal protein L11, RNA binding domain KUY52_17155 PF02357 Transcription termination factor nusG KUY52_17155 PF00467 KOW motif KUY52_17160 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KUY52_17170 PF03143 Elongation factor Tu C-terminal domain KUY52_17170 PF03144 Elongation factor Tu domain 2 KUY52_17170 PF00009 Elongation factor Tu GTP binding domain KUY52_17195 PF04715 Anthranilate synthase component I, N terminal region KUY52_17195 PF00425 chorismate binding enzyme KUY52_17200 PF13419 Haloacid dehalogenase-like hydrolase KUY52_17205 PF00498 FHA domain KUY52_17205 PF12401 Protein of unknown function (DUF2662) KUY52_17210 PF00263 Bacterial type II and III secretion system protein KUY52_17210 PF03958 Bacterial type II/III secretion system short domain KUY52_17225 PF00816 H-NS histone family KUY52_17250 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KUY52_17250 PF03900 Porphobilinogen deaminase, C-terminal domain KUY52_17255 PF00072 Response regulator receiver domain KUY52_17255 PF04397 LytTr DNA-binding domain KUY52_17260 PF06580 Histidine kinase KUY52_17260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_17260 PF07694 5TMR of 5TMR-LYT KUY52_17265 PF14698 Argininosuccinate lyase C-terminal KUY52_17265 PF00206 Lyase KUY52_17270 PF04362 Bacterial Fe(2+) trafficking KUY52_17275 PF01895 PhoU domain KUY52_17280 PF02321 Outer membrane efflux protein KUY52_17285 PF00892 EamA-like transporter family KUY52_17300 PF01964 Radical SAM ThiC family KUY52_17300 PF13667 ThiC-associated domain KUY52_17305 PF00293 NUDIX domain KUY52_17310 PF00149 Calcineurin-like phosphoesterase KUY52_17315 PF01258 Prokaryotic dksA/traR C4-type zinc finger KUY52_17320 PF00749 tRNA synthetases class I (E and Q), catalytic domain KUY52_17325 PF01098 Cell cycle protein KUY52_17330 PF02875 Mur ligase family, glutamate ligase domain KUY52_17330 PF08245 Mur ligase middle domain KUY52_17340 PF07664 Ferrous iron transport protein B C terminus KUY52_17340 PF02421 Ferrous iron transport protein B KUY52_17340 PF07670 Nucleoside recognition KUY52_17350 PF02899 Phage integrase, N-terminal SAM-like domain KUY52_17350 PF00589 Phage integrase family KUY52_17355 PF10411 Disulfide bond isomerase protein N-terminus KUY52_17355 PF13098 Thioredoxin-like domain KUY52_17360 PF00742 Homoserine dehydrogenase KUY52_17360 PF03447 Homoserine dehydrogenase, NAD binding domain KUY52_17360 PF01842 ACT domain KUY52_17365 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_17370 PF00768 D-alanyl-D-alanine carboxypeptidase KUY52_17375 PF00196 Bacterial regulatory proteins, luxR family KUY52_17375 PF00072 Response regulator receiver domain KUY52_17380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KUY52_17380 PF00512 His Kinase A (phospho-acceptor) domain KUY52_17385 PF02954 Bacterial regulatory protein, Fis family KUY52_17385 PF00072 Response regulator receiver domain KUY52_17385 PF00158 Sigma-54 interaction domain KUY52_17390 PF00595 PDZ domain KUY52_17390 PF03572 Peptidase family S41 KUY52_17395 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KUY52_17395 PF01676 Metalloenzyme superfamily KUY52_17400 PF03739 Lipopolysaccharide export system permease LptF/LptG KUY52_17410 PF00883 Cytosol aminopeptidase family, catalytic domain KUY52_17410 PF02789 Cytosol aminopeptidase family, N-terminal domain KUY52_17430 PF00677 Lumazine binding domain KUY52_17440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KUY52_17440 PF01872 RibD C-terminal domain KUY52_17445 PF03477 ATP cone domain KUY52_17450 PF00909 Ammonium Transporter Family KUY52_17455 PF00543 Nitrogen regulatory protein P-II KUY52_17465 PF01078 Magnesium chelatase, subunit ChlI KUY52_17465 PF13335 Magnesium chelatase, subunit ChlI C-terminal KUY52_17475 PF01636 Phosphotransferase enzyme family KUY52_17480 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KUY52_17500 PF02909 Tetracyclin repressor-like, C-terminal domain KUY52_17500 PF00440 Bacterial regulatory proteins, tetR family KUY52_17505 PF07690 Major Facilitator Superfamily KUY52_17515 PF00916 Sulfate permease family KUY52_17515 PF01740 STAS domain KUY52_17520 PF00582 Universal stress protein family KUY52_17540 PF00665 Integrase core domain KUY52_17550 PF01078 Magnesium chelatase, subunit ChlI KUY52_17550 PF13335 Magnesium chelatase, subunit ChlI C-terminal KUY52_17555 PF00155 Aminotransferase class I and II KUY52_17555 PF00392 Bacterial regulatory proteins, gntR family KUY52_17565 PF00701 Dihydrodipicolinate synthetase family KUY52_17575 PF03573 outer membrane porin, OprD family KUY52_17580 PF00719 Inorganic pyrophosphatase KUY52_17595 PF00501 AMP-binding enzyme KUY52_17595 PF13193 AMP-binding enzyme C-terminal domain KUY52_17600 PF03989 DNA gyrase C-terminal domain, beta-propeller KUY52_17600 PF00521 DNA gyrase/topoisomerase IV, subunit A KUY52_17605 PF07690 Major Facilitator Superfamily KUY52_17610 PF03458 UPF0126 domain KUY52_17615 PF02810 SEC-C motif KUY52_17620 PF03471 Transporter associated domain KUY52_17620 PF03741 Integral membrane protein TerC family KUY52_17625 PF03641 Possible lysine decarboxylase KUY52_17630 PF07690 Major Facilitator Superfamily KUY52_17640 PF00817 impB/mucB/samB family KUY52_17640 PF11799 impB/mucB/samB family C-terminal domain KUY52_17640 PF11798 IMS family HHH motif KUY52_17655 PF11842 Domain of unknown function (DUF3362) KUY52_17655 PF04055 Radical SAM superfamily KUY52_17655 PF08497 Radical SAM N-terminal KUY52_17675 PF03358 NADPH-dependent FMN reductase KUY52_17685 PF00291 Pyridoxal-phosphate dependent enzyme KUY52_17720 PF00440 Bacterial regulatory proteins, tetR family KUY52_17745 PF01327 Polypeptide deformylase KUY52_17755 PF17782 DprA winged helix domain KUY52_17755 PF02481 DNA recombination-mediator protein A KUY52_17760 PF01300 Telomere recombination KUY52_17765 PF00892 EamA-like transporter family KUY52_17770 PF00440 Bacterial regulatory proteins, tetR family KUY52_17775 PF07690 Major Facilitator Superfamily KUY52_17785 PF00255 Glutathione peroxidase KUY52_17795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KUY52_17800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUY52_17800 PF02874 ATP synthase alpha/beta family, beta-barrel domain KUY52_17805 PF00231 ATP synthase KUY52_17810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KUY52_17810 PF00306 ATP synthase alpha/beta chain, C terminal domain KUY52_17810 PF02874 ATP synthase alpha/beta family, beta-barrel domain KUY52_17815 PF00213 ATP synthase delta (OSCP) subunit KUY52_17820 PF00430 ATP synthase B/B' CF(0) KUY52_17825 PF00137 ATP synthase subunit C KUY52_17830 PF00119 ATP synthase A chain KUY52_17850 PF00005 ABC transporter KUY52_17855 PF00950 ABC 3 transport family KUY52_17860 PF01810 LysE type translocator KUY52_17865 PF04261 Dyp-type peroxidase family KUY52_17875 PF00390 Malic enzyme, N-terminal domain KUY52_17875 PF03949 Malic enzyme, NAD binding domain KUY52_17880 PF03485 Arginyl tRNA synthetase N terminal domain KUY52_17880 PF00750 tRNA synthetases class I (R) KUY52_17880 PF05746 DALR anticodon binding domain KUY52_17900 PF05726 Pirin C-terminal cupin domain KUY52_17900 PF02678 Pirin KUY52_17910 PF03551 Transcriptional regulator PadR-like family KUY52_17915 PF13427 Domain of unknown function (DUF4111) KUY52_17915 PF01909 Nucleotidyltransferase domain KUY52_17920 PF00117 Glutamine amidotransferase class-I KUY52_17920 PF00958 GMP synthase C terminal domain KUY52_17920 PF02540 NAD synthase KUY52_17925 PF04286 Protein of unknown function (DUF445) KUY52_17930 PF07681 DoxX KUY52_17935 PF09335 SNARE associated Golgi protein KUY52_17950 PF13614 AAA domain KUY52_17960 PF01722 BolA-like protein KUY52_17975 PF01648 4'-phosphopantetheinyl transferase superfamily KUY52_17980 PF12697 Alpha/beta hydrolase family KUY52_18000 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_18000 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_18000 PF08242 Methyltransferase domain KUY52_18000 PF00550 Phosphopantetheine attachment site KUY52_18000 PF14765 Polyketide synthase dehydratase KUY52_18000 PF00975 Thioesterase domain KUY52_18000 PF16197 Ketoacyl-synthetase C-terminal extension KUY52_18005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_18005 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_18005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_18010 PF00501 AMP-binding enzyme KUY52_18015 PF03472 Autoinducer binding domain KUY52_18015 PF00196 Bacterial regulatory proteins, luxR family KUY52_18025 PF00765 Autoinducer synthase KUY52_18030 PF00083 Sugar (and other) transporter KUY52_18030 PF07690 Major Facilitator Superfamily KUY52_18035 PF00378 Enoyl-CoA hydratase/isomerase KUY52_18040 PF00378 Enoyl-CoA hydratase/isomerase KUY52_18045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KUY52_18045 PF02770 Acyl-CoA dehydrogenase, middle domain KUY52_18045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KUY52_18050 PF13193 AMP-binding enzyme C-terminal domain KUY52_18050 PF00501 AMP-binding enzyme KUY52_18055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KUY52_18055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KUY52_18060 PF00171 Aldehyde dehydrogenase family KUY52_18070 PF00324 Amino acid permease KUY52_18075 PF00324 Amino acid permease KUY52_18080 PF01042 Endoribonuclease L-PSP KUY52_18085 PF00842 Alanine racemase, C-terminal domain KUY52_18085 PF01168 Alanine racemase, N-terminal domain KUY52_18090 PF01266 FAD dependent oxidoreductase KUY52_18095 PF01037 Lrp/AsnC ligand binding domain KUY52_18105 PF07715 TonB-dependent Receptor Plug Domain KUY52_18105 PF00593 TonB dependent receptor KUY52_18120 PF00849 RNA pseudouridylate synthase KUY52_18135 PF00440 Bacterial regulatory proteins, tetR family KUY52_18135 PF08361 MAATS-type transcriptional repressor, C-terminal region KUY52_18145 PF00109 Beta-ketoacyl synthase, N-terminal domain KUY52_18145 PF02801 Beta-ketoacyl synthase, C-terminal domain KUY52_18180 PF00330 Aconitase family (aconitate hydratase) KUY52_18180 PF00694 Aconitase C-terminal domain KUY52_18185 PF00285 Citrate synthase, C-terminal domain KUY52_18195 PF07729 FCD domain KUY52_18195 PF00392 Bacterial regulatory proteins, gntR family KUY52_18205 PF00155 Aminotransferase class I and II KUY52_18210 PF09330 D-lactate dehydrogenase, membrane binding KUY52_18210 PF01565 FAD binding domain KUY52_18215 PF01070 FMN-dependent dehydrogenase KUY52_18220 PF07729 FCD domain KUY52_18220 PF00392 Bacterial regulatory proteins, gntR family KUY52_18225 PF02652 L-lactate permease KUY52_18230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KUY52_18230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KUY52_18230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KUY52_18230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KUY52_18235 PF16363 GDP-mannose 4,6 dehydratase KUY52_18240 PF00342 Phosphoglucose isomerase KUY52_18245 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KUY52_18245 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KUY52_18245 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KUY52_18250 PF00483 Nucleotidyl transferase KUY52_18255 PF02719 Polysaccharide biosynthesis protein KUY52_18260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KUY52_18265 PF00132 Bacterial transferase hexapeptide (six repeats) KUY52_18265 PF17836 PglD N-terminal domain KUY52_18265 PF14602 Hexapeptide repeat of succinyl-transferase KUY52_18270 PF02397 Bacterial sugar transferase KUY52_18275 PF00534 Glycosyl transferases group 1 KUY52_18275 PF13439 Glycosyltransferase Family 4 KUY52_18280 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KUY52_18280 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KUY52_18280 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KUY52_18295 PF00535 Glycosyl transferase family 2 KUY52_18300 PF04230 Polysaccharide pyruvyl transferase KUY52_18310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KUY52_18310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KUY52_18310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KUY52_18315 PF10531 SLBB domain KUY52_18315 PF18412 Outer-membrane lipoprotein Wza C-terminal domain KUY52_18315 PF02563 Polysaccharide biosynthesis/export protein KUY52_18320 PF01451 Low molecular weight phosphotyrosine protein phosphatase KUY52_18325 PF13614 AAA domain KUY52_18325 PF13807 G-rich domain on putative tyrosine kinase KUY52_18325 PF02706 Chain length determinant protein KUY52_18330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUY52_18330 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KUY52_18335 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KUY52_18335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUY52_18340 PF03023 Lipid II flippase MurJ KUY52_18345 PF01510 N-acetylmuramoyl-L-alanine amidase KUY52_18350 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KUY52_18350 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KUY52_18360 PF05506 Domain of unknown function (DUF756) KUY52_18360 PF04185 Phosphoesterase family KUY52_18365 PF01138 3' exoribonuclease family, domain 1 KUY52_18365 PF03725 3' exoribonuclease family, domain 2 KUY52_18370 PF00487 Fatty acid desaturase KUY52_18375 PF00175 Oxidoreductase NAD-binding domain KUY52_18380 PF00440 Bacterial regulatory proteins, tetR family KUY52_18385 PF00440 Bacterial regulatory proteins, tetR family KUY52_18385 PF08360 QacR-like protein, C-terminal region KUY52_18390 PF01323 DSBA-like thioredoxin domain KUY52_18400 PF13419 Haloacid dehalogenase-like hydrolase KUY52_18405 PF00106 short chain dehydrogenase KUY52_18420 PF00696 Amino acid kinase family KUY52_18420 PF00583 Acetyltransferase (GNAT) family KUY52_18425 PF09084 NMT1/THI5 like KUY52_18430 PF09084 NMT1/THI5 like KUY52_18435 PF00296 Luciferase-like monooxygenase KUY52_18440 PF00528 Binding-protein-dependent transport system inner membrane component KUY52_18445 PF00005 ABC transporter KUY52_18450 PF08362 YcdC-like protein, C-terminal region KUY52_18450 PF00440 Bacterial regulatory proteins, tetR family KUY52_18455 PF01048 Phosphorylase superfamily KUY52_18465 PF06574 FAD synthetase KUY52_18465 PF01687 Riboflavin kinase KUY52_18470 PF08264 Anticodon-binding domain of tRNA KUY52_18470 PF00133 tRNA synthetases class I (I, L, M and V) KUY52_18470 PF06827 Zinc finger found in FPG and IleRS KUY52_18475 PF01252 Signal peptidase (SPase) II KUY52_18480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KUY52_18520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KUY52_18525 PF07859 alpha/beta hydrolase fold KUY52_18550 PF01025 GrpE KUY52_18555 PF00012 Hsp70 protein KUY52_18575 PF13406 Transglycosylase SLT domain KUY52_18580 PF02222 ATP-grasp domain KUY52_18580 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KUY52_18585 PF00731 AIR carboxylase KUY52_18595 PF08245 Mur ligase middle domain KUY52_18595 PF01225 Mur ligase family, catalytic domain KUY52_18595 PF02875 Mur ligase family, glutamate ligase domain KUY52_18605 PF01569 PAP2 superfamily KUY52_18610 PF03741 Integral membrane protein TerC family KUY52_18620 PF03738 Glutathionylspermidine synthase preATP-grasp KUY52_18625 PF00355 Rieske [2Fe-2S] domain KUY52_18630 PF01979 Amidohydrolase family KUY52_18635 PF00156 Phosphoribosyl transferase domain KUY52_18645 PF13098 Thioredoxin-like domain KUY52_18645 PF10411 Disulfide bond isomerase protein N-terminus KUY52_18650 PF01545 Cation efflux family KUY52_18650 PF16916 Dimerisation domain of Zinc Transporter KUY52_18655 PF02583 Metal-sensitive transcriptional repressor KUY52_18660 PF01926 50S ribosome-binding GTPase KUY52_18660 PF12631 MnmE helical domain KUY52_18660 PF10396 GTP-binding protein TrmE N-terminus KUY52_18665 PF02096 60Kd inner membrane protein KUY52_18665 PF14849 YidC periplasmic domain KUY52_18670 PF01809 Putative membrane protein insertion efficiency factor KUY52_18675 PF00825 Ribonuclease P KUY52_18680 PF00468 Ribosomal protein L34 KUY52_18685 PF01051 Initiator Replication protein